Query 001414
Match_columns 1082
No_of_seqs 1415 out of 5021
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 00:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 3E-119 6E-124 1008.4 96.1 994 1-1048 3-1017(1018)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-52 5E-57 538.5 88.3 710 32-823 151-897 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-51 5.3E-56 528.9 93.1 732 21-827 37-800 (899)
4 KOG2002 TPR-containing nuclear 100.0 3.1E-44 6.8E-49 404.4 78.3 632 84-793 42-731 (1018)
5 PRK11447 cellulose synthase su 100.0 1.8E-42 3.9E-47 445.2 78.3 621 83-779 28-706 (1157)
6 PRK11447 cellulose synthase su 100.0 2E-42 4.3E-47 444.8 78.6 646 37-772 25-739 (1157)
7 KOG4626 O-linked N-acetylgluco 100.0 1.4E-44 3E-49 385.4 40.0 462 125-724 45-506 (966)
8 KOG4626 O-linked N-acetylgluco 100.0 2.8E-43 6E-48 375.5 38.1 453 107-612 61-515 (966)
9 PRK09782 bacteriophage N4 rece 100.0 1.9E-37 4.1E-42 378.6 73.3 675 40-825 44-739 (987)
10 PRK09782 bacteriophage N4 rece 100.0 4.8E-35 1E-39 357.5 73.3 614 108-793 58-692 (987)
11 PLN03077 Protein ECB2; Provisi 100.0 1E-30 2.2E-35 329.4 69.6 667 35-829 46-723 (857)
12 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-31 3E-36 324.1 57.1 420 112-619 145-574 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 1.9E-31 4.1E-36 323.0 55.9 434 164-700 129-573 (615)
14 PLN03077 Protein ECB2; Provisi 100.0 7.4E-29 1.6E-33 312.5 67.5 640 26-773 70-720 (857)
15 KOG2076 RNA polymerase III tra 100.0 1.7E-28 3.6E-33 276.5 61.6 653 85-770 141-892 (895)
16 KOG0495 HAT repeat protein [RN 100.0 6.9E-27 1.5E-31 252.4 67.0 597 107-784 264-891 (913)
17 KOG2076 RNA polymerase III tra 100.0 7.8E-27 1.7E-31 263.1 59.9 628 40-735 139-893 (895)
18 KOG0495 HAT repeat protein [RN 100.0 8E-25 1.7E-29 236.5 63.8 606 34-749 279-890 (913)
19 PRK10049 pgaA outer membrane p 100.0 1.6E-26 3.6E-31 284.5 50.1 442 114-619 2-459 (765)
20 PRK15174 Vi polysaccharide exp 100.0 3.9E-26 8.5E-31 274.9 50.3 274 126-409 40-317 (656)
21 PRK15174 Vi polysaccharide exp 100.0 5.6E-26 1.2E-30 273.6 46.7 339 304-702 41-385 (656)
22 PRK10049 pgaA outer membrane p 100.0 9E-26 2E-30 278.0 48.8 432 255-781 3-464 (765)
23 KOG0547 Translocase of outer m 100.0 2.8E-25 6E-30 233.3 38.6 422 306-776 116-569 (606)
24 PLN03218 maturation of RBCL 1; 100.0 1.1E-22 2.4E-27 251.0 66.7 518 170-773 378-909 (1060)
25 KOG0547 Translocase of outer m 100.0 1.2E-24 2.6E-29 228.6 40.6 237 376-699 326-567 (606)
26 PLN03218 maturation of RBCL 1; 99.9 4.3E-22 9.2E-27 245.9 65.3 549 179-833 354-916 (1060)
27 KOG1127 TPR repeat-containing 99.9 9.2E-23 2E-27 230.5 52.1 350 110-467 474-909 (1238)
28 KOG1173 Anaphase-promoting com 99.9 1.4E-23 3E-28 225.3 40.6 505 168-790 22-535 (611)
29 PRK14574 hmsH outer membrane p 99.9 2.7E-22 5.9E-27 241.0 53.6 456 106-621 46-518 (822)
30 KOG2003 TPR repeat-containing 99.9 1.9E-23 4.1E-28 216.2 36.2 474 129-700 202-691 (840)
31 PLN03081 pentatricopeptide (PP 99.9 2E-22 4.4E-27 248.0 51.8 429 306-828 124-559 (697)
32 PLN03081 pentatricopeptide (PP 99.9 1.1E-22 2.5E-27 250.2 48.9 463 199-774 89-558 (697)
33 PRK14574 hmsH outer membrane p 99.9 4.3E-22 9.3E-27 239.3 51.9 424 89-590 74-521 (822)
34 KOG2003 TPR repeat-containing 99.9 4.5E-23 9.9E-28 213.4 35.7 458 109-631 216-703 (840)
35 KOG1173 Anaphase-promoting com 99.9 2.1E-22 4.6E-27 216.2 40.4 467 107-675 29-529 (611)
36 KOG1127 TPR repeat-containing 99.9 8.8E-21 1.9E-25 214.7 51.1 645 107-828 381-1069(1238)
37 KOG1155 Anaphase-promoting com 99.9 1.3E-21 2.8E-26 204.8 40.4 332 374-774 162-496 (559)
38 KOG1155 Anaphase-promoting com 99.9 1.7E-20 3.8E-25 196.4 46.5 439 42-583 80-537 (559)
39 KOG1126 DNA-binding cell divis 99.9 1.4E-22 3.1E-27 222.7 29.4 312 81-411 315-626 (638)
40 KOG0548 Molecular co-chaperone 99.9 2E-21 4.4E-26 208.5 37.2 260 344-694 226-485 (539)
41 KOG1156 N-terminal acetyltrans 99.9 9.4E-19 2E-23 191.2 55.9 449 128-617 7-469 (700)
42 KOG0624 dsRNA-activated protei 99.9 8.2E-21 1.8E-25 190.9 34.6 345 123-592 33-380 (504)
43 KOG1126 DNA-binding cell divis 99.9 6.9E-22 1.5E-26 217.4 27.6 289 425-777 335-624 (638)
44 KOG4162 Predicted calmodulin-b 99.9 1E-17 2.2E-22 186.9 58.6 410 311-783 290-793 (799)
45 PRK11788 tetratricopeptide rep 99.9 1.4E-20 3.1E-25 216.8 37.6 305 343-737 36-347 (389)
46 KOG1915 Cell cycle control pro 99.9 9.9E-18 2.1E-22 175.8 53.5 476 116-676 61-547 (677)
47 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 214.0 38.4 274 129-412 36-318 (389)
48 KOG4162 Predicted calmodulin-b 99.9 3.6E-19 7.8E-24 198.3 41.5 435 126-619 321-786 (799)
49 KOG0548 Molecular co-chaperone 99.9 6.6E-19 1.4E-23 189.3 40.9 438 310-791 7-473 (539)
50 KOG1156 N-terminal acetyltrans 99.9 1.8E-17 4E-22 181.2 52.0 495 162-739 7-513 (700)
51 KOG0624 dsRNA-activated protei 99.9 5.6E-20 1.2E-24 184.9 29.9 331 36-418 34-383 (504)
52 KOG1174 Anaphase-promoting com 99.9 4.7E-18 1E-22 175.4 40.8 409 301-783 93-510 (564)
53 KOG1174 Anaphase-promoting com 99.9 2.4E-17 5.3E-22 170.2 41.7 286 337-680 227-516 (564)
54 KOG1915 Cell cycle control pro 99.8 1.3E-15 2.7E-20 160.2 52.5 467 90-615 73-584 (677)
55 KOG2047 mRNA splicing factor [ 99.8 6.6E-14 1.4E-18 152.8 59.3 594 117-830 16-691 (835)
56 KOG2047 mRNA splicing factor [ 99.8 7.2E-14 1.6E-18 152.5 58.8 659 33-761 20-711 (835)
57 PF13429 TPR_15: Tetratricopep 99.8 1.2E-19 2.5E-24 197.8 14.6 265 446-773 12-277 (280)
58 PRK12370 invasion protein regu 99.8 1.1E-16 2.3E-21 190.5 33.3 251 143-405 276-535 (553)
59 KOG1129 TPR repeat-containing 99.8 8.1E-18 1.8E-22 168.5 19.5 251 518-787 222-472 (478)
60 TIGR00540 hemY_coli hemY prote 99.8 4.4E-16 9.4E-21 178.5 36.9 301 131-470 87-398 (409)
61 PF13429 TPR_15: Tetratricopep 99.8 1.2E-18 2.6E-23 189.8 13.6 257 167-433 13-272 (280)
62 KOG1129 TPR repeat-containing 99.8 2.3E-17 5E-22 165.3 20.9 274 136-417 187-470 (478)
63 PRK12370 invasion protein regu 99.8 1.6E-16 3.4E-21 189.0 31.8 264 157-431 251-529 (553)
64 KOG3785 Uncharacterized conser 99.8 4.4E-15 9.4E-20 150.5 36.9 378 137-614 31-420 (557)
65 TIGR00540 hemY_coli hemY prote 99.8 3E-15 6.4E-20 171.6 39.6 290 107-405 97-399 (409)
66 KOG2376 Signal recognition par 99.8 2.5E-14 5.4E-19 155.4 43.5 460 278-791 22-505 (652)
67 KOG3785 Uncharacterized conser 99.8 1E-14 2.2E-19 147.9 37.6 455 171-777 31-494 (557)
68 KOG2376 Signal recognition par 99.8 5.6E-14 1.2E-18 152.7 44.3 464 106-730 24-513 (652)
69 PRK10747 putative protoheme IX 99.7 1.7E-14 3.7E-19 164.4 39.0 295 131-470 87-389 (398)
70 PRK11189 lipoprotein NlpI; Pro 99.7 2.4E-15 5.2E-20 163.8 29.7 152 108-264 40-195 (296)
71 PRK10747 putative protoheme IX 99.7 2.5E-14 5.4E-19 163.0 38.3 285 108-406 98-391 (398)
72 KOG1125 TPR repeat-containing 99.7 8.5E-16 1.8E-20 167.0 24.4 258 446-764 289-562 (579)
73 COG3063 PilF Tfp pilus assembl 99.7 3.4E-15 7.3E-20 144.3 25.7 210 197-413 35-244 (250)
74 KOG0550 Molecular chaperone (D 99.7 2.1E-15 4.5E-20 156.7 23.9 311 164-594 51-361 (486)
75 KOG1125 TPR repeat-containing 99.7 6.1E-16 1.3E-20 168.1 20.0 237 522-776 288-530 (579)
76 PRK11189 lipoprotein NlpI; Pro 99.7 9E-15 2E-19 159.4 28.9 243 283-567 41-285 (296)
77 COG3063 PilF Tfp pilus assembl 99.7 9.2E-15 2E-19 141.3 24.8 207 342-621 35-241 (250)
78 KOG0550 Molecular chaperone (D 99.7 2.1E-15 4.5E-20 156.7 21.7 274 106-408 61-353 (486)
79 COG2956 Predicted N-acetylgluc 99.7 3.7E-13 8E-18 135.9 36.7 300 131-470 38-346 (389)
80 TIGR02521 type_IV_pilW type IV 99.7 2E-14 4.3E-19 152.6 28.5 204 197-407 31-234 (234)
81 TIGR02521 type_IV_pilW type IV 99.7 1.5E-14 3.2E-19 153.5 27.5 197 83-294 31-229 (234)
82 PF12569 NARP1: NMDA receptor- 99.7 2E-12 4.4E-17 147.9 43.6 298 129-470 5-333 (517)
83 PLN02789 farnesyltranstransfer 99.6 7.3E-14 1.6E-18 151.2 28.0 223 514-757 32-268 (320)
84 KOG1840 Kinesin light chain [C 99.6 3.7E-13 8E-18 151.6 33.4 260 264-582 195-479 (508)
85 COG2956 Predicted N-acetylgluc 99.6 1.2E-12 2.6E-17 132.3 33.0 297 201-580 39-345 (389)
86 PLN02789 farnesyltranstransfer 99.6 1.6E-13 3.6E-18 148.5 28.4 238 140-414 49-311 (320)
87 KOG1840 Kinesin light chain [C 99.6 1.2E-12 2.5E-17 147.7 34.4 258 227-547 195-478 (508)
88 cd05804 StaR_like StaR_like; a 99.6 3.3E-12 7.1E-17 145.2 36.5 317 124-472 2-337 (355)
89 cd05804 StaR_like StaR_like; a 99.6 1.8E-12 3.9E-17 147.3 34.2 310 81-406 4-337 (355)
90 KOG4340 Uncharacterized conser 99.6 7.6E-12 1.7E-16 124.5 32.7 410 211-700 24-445 (459)
91 KOG4340 Uncharacterized conser 99.6 3E-12 6.5E-17 127.4 29.3 399 315-787 20-457 (459)
92 PF12569 NARP1: NMDA receptor- 99.6 9.3E-12 2E-16 142.5 37.3 320 305-699 4-335 (517)
93 TIGR03302 OM_YfiO outer membra 99.5 2.1E-12 4.6E-17 137.0 24.2 194 123-373 28-234 (235)
94 TIGR03302 OM_YfiO outer membra 99.5 3.7E-12 8.1E-17 135.1 24.5 194 157-407 28-234 (235)
95 PRK15359 type III secretion sy 99.5 5.8E-13 1.3E-17 127.7 15.7 127 114-244 13-139 (144)
96 PRK14720 transcript cleavage f 99.5 8E-09 1.7E-13 123.5 53.2 248 122-409 25-310 (906)
97 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.7E-14 114.7 35.0 298 275-662 91-388 (400)
98 KOG3617 WD40 and TPR repeat-co 99.4 2.1E-08 4.5E-13 112.9 46.4 619 28-779 714-1365(1416)
99 PRK15359 type III secretion sy 99.4 3.8E-12 8.3E-17 122.0 14.8 125 655-789 13-137 (144)
100 COG3071 HemY Uncharacterized e 99.4 3.7E-09 7.9E-14 111.1 36.7 296 133-470 89-389 (400)
101 PRK10370 formate-dependent nit 99.4 3.9E-11 8.5E-16 121.5 20.4 123 108-231 53-178 (198)
102 PRK14720 transcript cleavage f 99.3 5.1E-11 1.1E-15 141.9 21.5 225 514-789 26-268 (906)
103 PRK04841 transcriptional regul 99.3 1.2E-08 2.6E-13 131.3 43.8 380 42-471 343-760 (903)
104 PRK04841 transcriptional regul 99.3 8.9E-09 1.9E-13 132.5 42.7 387 270-738 343-761 (903)
105 KOG3060 Uncharacterized conser 99.3 1E-09 2.2E-14 108.0 25.4 211 51-276 23-233 (289)
106 KOG2053 Mitochondrial inherita 99.3 2.3E-07 5.1E-12 106.8 48.0 95 525-619 442-539 (932)
107 PRK10370 formate-dependent nit 99.3 9.9E-11 2.2E-15 118.6 18.8 123 649-778 53-178 (198)
108 KOG1128 Uncharacterized conser 99.3 9.9E-10 2.1E-14 123.2 27.5 222 339-617 395-617 (777)
109 KOG3060 Uncharacterized conser 99.3 8.2E-10 1.8E-14 108.6 23.4 184 442-679 52-235 (289)
110 COG5010 TadD Flp pilus assembl 99.3 2.4E-10 5.2E-15 113.9 20.0 179 112-295 51-229 (257)
111 KOG1130 Predicted G-alpha GTPa 99.3 6.7E-11 1.4E-15 122.9 16.5 255 306-616 56-344 (639)
112 COG5010 TadD Flp pilus assembl 99.3 2.3E-10 5E-15 114.0 19.6 176 572-769 52-227 (257)
113 KOG1130 Predicted G-alpha GTPa 99.3 8.6E-11 1.9E-15 122.1 17.2 276 346-697 21-343 (639)
114 TIGR02552 LcrH_SycD type III s 99.3 7.4E-11 1.6E-15 113.0 15.6 119 115-234 4-122 (135)
115 KOG1128 Uncharacterized conser 99.3 4.7E-10 1E-14 125.7 21.8 244 436-756 392-635 (777)
116 PRK15179 Vi polysaccharide bio 99.2 9.6E-10 2.1E-14 130.9 23.6 156 113-272 71-226 (694)
117 TIGR02552 LcrH_SycD type III s 99.2 1.5E-10 3.3E-15 110.8 13.9 119 656-781 4-122 (135)
118 PRK15363 pathogenicity island 99.2 5.5E-10 1.2E-14 104.2 13.6 108 120-228 26-134 (157)
119 PRK15179 Vi polysaccharide bio 99.1 2.6E-09 5.6E-14 127.3 21.6 175 42-234 51-225 (694)
120 KOG2053 Mitochondrial inherita 99.1 4.1E-05 8.9E-10 88.9 53.8 239 137-409 18-259 (932)
121 KOG0553 TPR repeat-containing 99.1 8.4E-10 1.8E-14 112.1 13.4 115 131-246 84-198 (304)
122 KOG0553 TPR repeat-containing 99.1 1.1E-09 2.3E-14 111.4 13.7 121 89-214 80-200 (304)
123 KOG3617 WD40 and TPR repeat-co 99.1 3.6E-06 7.9E-11 95.4 42.3 327 348-737 806-1174(1416)
124 PRK10866 outer membrane biogen 99.1 3.1E-08 6.7E-13 103.7 25.0 201 518-770 31-238 (243)
125 PF13525 YfiO: Outer membrane 99.1 1.6E-08 3.4E-13 103.6 21.7 192 518-765 4-199 (203)
126 PF04733 Coatomer_E: Coatomer 99.1 3.4E-09 7.4E-14 113.6 17.5 156 417-619 109-268 (290)
127 PF04733 Coatomer_E: Coatomer 99.1 2.1E-09 4.5E-14 115.3 15.8 259 135-412 8-272 (290)
128 PRK10866 outer membrane biogen 99.1 3.8E-08 8.3E-13 103.0 24.7 204 126-368 30-238 (243)
129 COG4783 Putative Zn-dependent 99.1 1E-08 2.2E-13 110.9 20.6 153 159-335 303-455 (484)
130 KOG2471 TPR repeat-containing 99.1 9.7E-08 2.1E-12 102.0 26.4 159 382-565 212-381 (696)
131 PF13525 YfiO: Outer membrane 99.0 2.5E-08 5.4E-13 102.1 20.3 190 127-362 4-198 (203)
132 COG4783 Putative Zn-dependent 99.0 8.4E-08 1.8E-12 103.9 24.6 153 193-372 303-455 (484)
133 KOG1914 mRNA cleavage and poly 99.0 3.7E-05 8.1E-10 84.2 43.8 433 118-618 10-503 (656)
134 PLN03088 SGT1, suppressor of 99.0 7.4E-09 1.6E-13 115.5 16.7 113 131-244 5-117 (356)
135 PRK15363 pathogenicity island 99.0 1.2E-08 2.5E-13 95.5 14.5 107 155-265 27-134 (157)
136 KOG3616 Selective LIM binding 98.9 2.9E-05 6.4E-10 87.0 41.4 414 106-613 456-908 (1636)
137 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.6E-08 7.9E-13 91.9 14.6 108 128-235 2-114 (119)
138 PLN03088 SGT1, suppressor of 98.9 4.6E-08 1E-12 109.2 16.5 111 165-279 5-115 (356)
139 COG4235 Cytochrome c biogenesi 98.9 5.7E-08 1.2E-12 100.0 15.4 121 110-231 138-261 (287)
140 KOG1070 rRNA processing protei 98.9 1E-06 2.2E-11 105.7 27.6 230 16-264 1434-1664(1710)
141 COG4785 NlpI Lipoprotein NlpI, 98.8 1.9E-07 4E-12 89.7 17.4 105 81-196 63-167 (297)
142 KOG2300 Uncharacterized conser 98.8 0.00034 7.5E-09 75.7 43.3 95 673-767 449-550 (629)
143 KOG3081 Vesicle coat complex C 98.8 2.2E-06 4.8E-11 85.6 24.6 258 412-737 11-270 (299)
144 COG4785 NlpI Lipoprotein NlpI, 98.8 1.6E-07 3.4E-12 90.2 15.5 128 128-260 65-192 (297)
145 PRK15331 chaperone protein Sic 98.8 7.1E-08 1.5E-12 90.6 12.8 109 120-230 29-137 (165)
146 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.2E-07 2.6E-12 88.3 14.6 109 306-414 3-114 (119)
147 PRK02603 photosystem I assembl 98.8 2E-07 4.3E-12 93.0 16.0 119 125-267 32-153 (172)
148 KOG3616 Selective LIM binding 98.8 0.00091 2E-08 75.5 51.2 152 649-823 1009-1181(1636)
149 KOG1941 Acetylcholine receptor 98.8 2.6E-06 5.7E-11 88.1 23.6 317 200-582 9-360 (518)
150 COG4105 ComL DNA uptake lipopr 98.8 3.1E-06 6.8E-11 85.4 23.7 199 518-778 33-238 (254)
151 PRK11906 transcriptional regul 98.8 6.5E-07 1.4E-11 98.0 20.2 149 109-262 273-435 (458)
152 KOG1914 mRNA cleavage and poly 98.7 0.00047 1E-08 75.9 41.0 188 535-739 309-503 (656)
153 cd00189 TPR Tetratricopeptide 98.7 1.3E-07 2.8E-12 83.7 11.9 98 130-228 2-99 (100)
154 PF13414 TPR_11: TPR repeat; P 98.7 4.6E-08 1E-12 80.8 8.1 67 127-193 2-69 (69)
155 COG4235 Cytochrome c biogenesi 98.7 6.8E-07 1.5E-11 92.2 17.7 118 179-297 139-256 (287)
156 PRK10803 tol-pal system protei 98.7 2.4E-07 5.2E-12 97.6 14.8 110 668-779 141-252 (263)
157 PRK10803 tol-pal system protei 98.7 5.1E-07 1.1E-11 95.1 16.7 108 128-235 142-255 (263)
158 COG1729 Uncharacterized protei 98.7 2.2E-07 4.8E-12 94.6 13.3 108 672-781 144-252 (262)
159 PF12895 Apc3: Anaphase-promot 98.7 4.3E-08 9.3E-13 84.5 7.2 81 141-223 2-84 (84)
160 PRK11906 transcriptional regul 98.7 1.1E-06 2.3E-11 96.4 19.3 134 132-269 259-407 (458)
161 KOG0543 FKBP-type peptidyl-pro 98.7 2.8E-07 6E-12 98.2 14.4 123 42-175 210-338 (397)
162 KOG2300 Uncharacterized conser 98.7 0.0011 2.5E-08 71.9 46.3 428 41-548 8-514 (629)
163 PF13414 TPR_11: TPR repeat; P 98.7 7.5E-08 1.6E-12 79.5 8.2 67 161-228 2-69 (69)
164 KOG2471 TPR repeat-containing 98.7 1.6E-05 3.5E-10 85.5 27.4 138 278-420 216-379 (696)
165 PF09976 TPR_21: Tetratricopep 98.7 8.3E-07 1.8E-11 85.6 16.4 117 140-260 23-144 (145)
166 COG4105 ComL DNA uptake lipopr 98.7 5.9E-06 1.3E-10 83.4 22.5 190 127-365 33-227 (254)
167 KOG1941 Acetylcholine receptor 98.7 8.7E-06 1.9E-10 84.4 23.8 239 130-371 8-275 (518)
168 CHL00033 ycf3 photosystem I as 98.7 6.9E-07 1.5E-11 88.8 15.9 99 112-211 17-120 (168)
169 PRK02603 photosystem I assembl 98.6 5.7E-07 1.2E-11 89.7 15.1 108 302-409 32-153 (172)
170 PF09976 TPR_21: Tetratricopep 98.6 6.2E-07 1.3E-11 86.5 14.7 123 280-403 23-145 (145)
171 PF14938 SNAP: Soluble NSF att 98.6 3.2E-06 7E-11 91.6 21.9 106 672-777 117-229 (282)
172 PRK10153 DNA-binding transcrip 98.6 1.6E-06 3.4E-11 100.8 20.4 141 124-269 333-488 (517)
173 KOG3081 Vesicle coat complex C 98.6 2E-05 4.4E-10 78.9 24.4 191 266-470 39-235 (299)
174 PRK10153 DNA-binding transcrip 98.6 1E-06 2.2E-11 102.3 17.6 125 107-233 355-489 (517)
175 PF12895 Apc3: Anaphase-promot 98.6 6.8E-08 1.5E-12 83.2 5.7 80 108-188 3-84 (84)
176 KOG1070 rRNA processing protei 98.6 1.6E-05 3.4E-10 95.8 26.9 215 253-471 1443-1663(1710)
177 PF13432 TPR_16: Tetratricopep 98.6 1.5E-07 3.2E-12 76.6 7.3 63 133-195 2-64 (65)
178 KOG0543 FKBP-type peptidyl-pro 98.6 1.1E-06 2.4E-11 93.7 15.6 131 131-264 211-356 (397)
179 cd00189 TPR Tetratricopeptide 98.6 6.8E-07 1.5E-11 79.0 12.2 98 164-265 2-99 (100)
180 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00016 3.4E-09 76.4 32.9 66 343-408 203-268 (291)
181 KOG1258 mRNA processing protei 98.6 0.0011 2.3E-08 74.9 39.1 184 442-680 297-486 (577)
182 PF14938 SNAP: Soluble NSF att 98.6 3.7E-06 8.1E-11 91.1 19.9 166 649-827 49-226 (282)
183 COG1729 Uncharacterized protei 98.6 1.5E-06 3.2E-11 88.6 15.3 111 271-381 144-254 (262)
184 PF13432 TPR_16: Tetratricopep 98.6 2.8E-07 6.1E-12 74.9 8.0 65 346-410 1-65 (65)
185 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00016 3.5E-09 76.3 32.0 224 142-374 37-268 (291)
186 CHL00033 ycf3 photosystem I as 98.5 2E-06 4.4E-11 85.4 15.4 106 53-176 12-120 (168)
187 KOG4648 Uncharacterized conser 98.5 4.1E-08 8.8E-13 100.2 2.6 243 131-417 100-342 (536)
188 PF13512 TPR_18: Tetratricopep 98.5 3.7E-06 8.1E-11 77.4 14.2 86 127-212 9-99 (142)
189 PRK15331 chaperone protein Sic 98.5 1.6E-06 3.5E-11 81.6 12.1 107 157-268 32-138 (165)
190 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 5.3E-06 1.2E-10 91.9 17.3 110 142-258 183-292 (395)
191 COG3898 Uncharacterized membra 98.4 0.0011 2.5E-08 69.9 31.0 261 129-404 121-391 (531)
192 PF10345 Cohesin_load: Cohesin 98.4 0.016 3.5E-07 70.3 48.7 470 250-772 37-605 (608)
193 PF13512 TPR_18: Tetratricopep 98.4 9.5E-06 2.1E-10 74.8 14.2 109 304-412 9-135 (142)
194 KOG0985 Vesicle coat protein c 98.4 0.013 2.8E-07 69.2 53.3 670 23-794 525-1329(1666)
195 COG3898 Uncharacterized membra 98.4 0.0014 3E-08 69.4 31.3 291 172-471 94-392 (531)
196 PF14559 TPR_19: Tetratricopep 98.3 1.5E-06 3.2E-11 71.5 7.3 65 173-238 2-66 (68)
197 PF12688 TPR_5: Tetratrico pep 98.3 8.8E-06 1.9E-10 74.0 12.6 99 306-404 2-103 (120)
198 KOG1258 mRNA processing protei 98.3 0.013 2.8E-07 66.5 41.3 117 144-264 61-181 (577)
199 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.2E-10 72.6 13.6 97 128-225 1-103 (120)
200 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.0036 7.8E-08 67.4 33.0 63 516-581 299-361 (660)
201 PF14559 TPR_19: Tetratricopep 98.3 2.5E-06 5.5E-11 70.0 7.2 67 352-418 1-67 (68)
202 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.9E-10 87.8 16.1 115 173-294 180-294 (395)
203 COG4700 Uncharacterized protei 98.2 0.00023 5E-09 67.3 19.7 149 568-736 71-221 (251)
204 KOG4234 TPR repeat-containing 98.2 1.5E-05 3.3E-10 75.9 12.1 98 134-232 101-203 (271)
205 PF13371 TPR_9: Tetratricopept 98.2 5.9E-06 1.3E-10 69.0 8.6 64 170-234 3-66 (73)
206 KOG4648 Uncharacterized conser 98.2 5.5E-07 1.2E-11 92.2 2.4 232 309-590 101-338 (536)
207 KOG2796 Uncharacterized conser 98.2 0.00043 9.4E-09 69.1 22.3 260 375-718 68-333 (366)
208 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.015 3.3E-07 62.8 37.1 431 116-619 30-534 (660)
209 PF07079 DUF1347: Protein of u 98.2 0.017 3.6E-07 62.9 44.9 121 106-226 18-157 (549)
210 PF13371 TPR_9: Tetratricopept 98.2 7.8E-06 1.7E-10 68.2 8.7 70 348-417 1-70 (73)
211 KOG4234 TPR repeat-containing 98.2 2.9E-05 6.3E-10 74.0 12.7 111 166-279 99-213 (271)
212 PF10345 Cohesin_load: Cohesin 98.2 0.046 1E-06 66.4 49.9 409 287-777 40-567 (608)
213 PF13424 TPR_12: Tetratricopep 98.2 6.6E-06 1.4E-10 69.7 7.6 69 706-774 3-76 (78)
214 COG4700 Uncharacterized protei 98.1 0.00016 3.4E-09 68.3 16.8 133 108-246 74-208 (251)
215 KOG4555 TPR repeat-containing 98.1 0.00024 5.3E-09 62.9 15.0 99 131-229 46-147 (175)
216 KOG4507 Uncharacterized conser 98.0 0.00096 2.1E-08 73.8 22.4 119 116-235 201-321 (886)
217 KOG2796 Uncharacterized conser 98.0 0.0026 5.7E-08 63.7 23.0 223 38-266 67-318 (366)
218 PF13424 TPR_12: Tetratricopep 98.0 1.2E-05 2.6E-10 68.1 5.6 73 666-738 2-76 (78)
219 PF07079 DUF1347: Protein of u 97.9 0.052 1.1E-06 59.2 44.3 144 130-296 8-156 (549)
220 KOG0985 Vesicle coat protein c 97.9 0.1 2.2E-06 62.1 55.7 600 36-729 674-1375(1666)
221 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.7E-05 1E-09 83.6 9.8 68 124-191 71-141 (453)
222 KOG4555 TPR repeat-containing 97.9 0.00022 4.8E-09 63.1 12.0 97 674-775 48-146 (175)
223 KOG2396 HAT (Half-A-TPR) repea 97.9 0.077 1.7E-06 58.7 41.5 101 516-616 457-559 (568)
224 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 6.6E-05 1.4E-09 82.5 10.0 71 157-227 70-142 (453)
225 KOG1550 Extracellular protein 97.8 0.0044 9.5E-08 73.8 25.5 270 518-827 243-539 (552)
226 KOG1586 Protein required for f 97.8 0.013 2.9E-07 57.9 23.1 193 531-780 26-231 (288)
227 KOG2610 Uncharacterized conser 97.8 0.0024 5.2E-08 66.1 18.8 172 559-744 109-283 (491)
228 PF06552 TOM20_plant: Plant sp 97.7 0.00033 7.1E-09 66.8 11.3 70 107-176 4-83 (186)
229 KOG1550 Extracellular protein 97.7 0.01 2.2E-07 70.7 26.6 282 109-407 227-540 (552)
230 PF05843 Suf: Suppressor of fo 97.7 0.00077 1.7E-08 72.8 15.7 135 130-268 3-141 (280)
231 PF06552 TOM20_plant: Plant sp 97.7 0.00037 8.1E-09 66.4 11.0 67 144-211 7-83 (186)
232 KOG4507 Uncharacterized conser 97.7 0.0047 1E-07 68.6 20.7 111 591-719 611-721 (886)
233 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.9E-08 70.9 16.6 127 649-780 15-143 (280)
234 PF04184 ST7: ST7 protein; In 97.7 0.0025 5.4E-08 70.3 18.3 192 558-779 173-381 (539)
235 KOG2610 Uncharacterized conser 97.7 0.0046 1E-07 64.1 19.1 167 130-332 105-274 (491)
236 KOG4642 Chaperone-dependent E3 97.6 0.00049 1.1E-08 67.9 11.3 85 108-192 24-108 (284)
237 KOG4642 Chaperone-dependent E3 97.6 0.00014 2.9E-09 71.8 7.0 93 167-263 15-107 (284)
238 KOG2396 HAT (Half-A-TPR) repea 97.6 0.18 4E-06 55.9 42.1 420 110-582 87-559 (568)
239 PF13281 DUF4071: Domain of un 97.6 0.0092 2E-07 65.3 21.5 180 553-737 141-334 (374)
240 PF10300 DUF3808: Protein of u 97.5 0.099 2.1E-06 60.8 30.6 120 283-405 248-376 (468)
241 KOG1586 Protein required for f 97.5 0.021 4.5E-07 56.6 20.7 101 519-619 113-227 (288)
242 PF04184 ST7: ST7 protein; In 97.5 0.0042 9.2E-08 68.5 17.3 196 201-416 172-386 (539)
243 PF13428 TPR_14: Tetratricopep 97.5 0.00025 5.5E-09 51.9 5.5 43 128-170 1-43 (44)
244 PF10300 DUF3808: Protein of u 97.5 0.0025 5.4E-08 74.0 16.5 173 44-225 192-375 (468)
245 COG2909 MalT ATP-dependent tra 97.5 0.13 2.7E-06 61.3 29.8 240 518-770 414-685 (894)
246 KOG1585 Protein required for f 97.5 0.025 5.5E-07 56.4 20.6 202 198-434 32-252 (308)
247 PF13428 TPR_14: Tetratricopep 97.5 0.00017 3.7E-09 52.8 4.3 42 745-786 2-43 (44)
248 PF08631 SPO22: Meiosis protei 97.4 0.15 3.4E-06 55.0 28.8 60 387-471 4-65 (278)
249 KOG0376 Serine-threonine phosp 97.4 0.00019 4.1E-09 78.6 5.9 101 106-207 16-116 (476)
250 KOG1585 Protein required for f 97.4 0.027 5.7E-07 56.3 19.5 88 530-617 121-220 (308)
251 PF02259 FAT: FAT domain; Int 97.4 0.063 1.4E-06 60.7 26.4 70 264-333 142-212 (352)
252 PF08631 SPO22: Meiosis protei 97.3 0.24 5.3E-06 53.5 28.7 134 199-333 37-185 (278)
253 COG2976 Uncharacterized protei 97.3 0.0038 8.3E-08 60.3 12.4 117 656-777 73-192 (207)
254 PF13281 DUF4071: Domain of un 97.2 0.056 1.2E-06 59.4 21.9 183 164-376 143-339 (374)
255 KOG2041 WD40 repeat protein [G 97.2 0.28 6.2E-06 56.1 27.1 231 341-613 691-936 (1189)
256 KOG0545 Aryl-hydrocarbon recep 97.2 0.0039 8.5E-08 61.9 10.9 122 442-588 178-299 (329)
257 KOG2062 26S proteasome regulat 97.1 0.83 1.8E-05 53.1 33.7 256 531-827 369-636 (929)
258 PRK13184 pknD serine/threonine 97.1 1.3 2.8E-05 55.3 35.0 89 107-196 488-586 (932)
259 KOG0376 Serine-threonine phosp 97.1 0.00062 1.3E-08 74.7 5.9 109 133-242 9-117 (476)
260 PF04910 Tcf25: Transcriptiona 97.1 0.011 2.4E-07 65.7 16.0 175 25-229 25-225 (360)
261 PRK15180 Vi polysaccharide bio 97.1 0.15 3.2E-06 55.8 22.9 127 107-234 302-428 (831)
262 KOG0545 Aryl-hydrocarbon recep 97.1 0.0042 9.1E-08 61.7 10.6 101 129-230 179-297 (329)
263 PF07719 TPR_2: Tetratricopept 97.1 0.0011 2.5E-08 45.3 5.0 34 744-777 1-34 (34)
264 COG3118 Thioredoxin domain-con 97.1 0.049 1.1E-06 56.6 18.4 152 127-282 133-286 (304)
265 KOG0530 Protein farnesyltransf 97.1 0.13 2.9E-06 52.0 20.8 183 112-295 61-251 (318)
266 PF13431 TPR_17: Tetratricopep 97.1 0.00047 1E-08 47.0 2.7 32 117-148 2-33 (34)
267 KOG0128 RNA-binding protein SA 97.0 1.2 2.6E-05 52.8 37.3 239 518-768 311-558 (881)
268 PF13431 TPR_17: Tetratricopep 97.0 0.00058 1.3E-08 46.5 2.8 32 692-728 2-33 (34)
269 PF02259 FAT: FAT domain; Int 97.0 0.55 1.2E-05 53.0 29.0 159 666-827 143-339 (352)
270 KOG0551 Hsp90 co-chaperone CNS 97.0 0.064 1.4E-06 56.2 18.4 81 707-787 80-162 (390)
271 COG3118 Thioredoxin domain-con 97.0 0.077 1.7E-06 55.2 19.0 151 161-319 133-286 (304)
272 PF00515 TPR_1: Tetratricopept 97.0 0.0014 3.1E-08 44.8 4.5 32 745-776 2-33 (34)
273 COG2909 MalT ATP-dependent tra 97.0 1.4 3.1E-05 52.8 33.7 268 40-333 347-646 (894)
274 KOG0890 Protein kinase of the 97.0 2.8 6E-05 55.8 40.5 409 236-671 1388-1840(2382)
275 COG2976 Uncharacterized protei 96.9 0.027 5.8E-07 54.7 13.9 98 309-407 93-190 (207)
276 KOG0890 Protein kinase of the 96.9 3.2 7E-05 55.2 45.0 154 44-220 1387-1541(2382)
277 PF00515 TPR_1: Tetratricopept 96.8 0.0022 4.7E-08 43.9 4.5 31 199-229 3-33 (34)
278 PF08424 NRDE-2: NRDE-2, neces 96.8 0.086 1.9E-06 58.2 18.9 84 178-262 47-130 (321)
279 PF07719 TPR_2: Tetratricopept 96.8 0.003 6.4E-08 43.1 4.8 31 130-160 3-33 (34)
280 KOG2041 WD40 repeat protein [G 96.7 1.7 3.7E-05 50.2 32.3 187 250-468 750-936 (1189)
281 PRK13184 pknD serine/threonine 96.7 1.4 3E-05 55.1 30.3 131 275-409 482-624 (932)
282 KOG0551 Hsp90 co-chaperone CNS 96.6 0.014 3E-07 60.9 10.3 100 129-229 82-185 (390)
283 KOG0530 Protein farnesyltransf 96.6 0.32 7E-06 49.4 19.0 147 517-667 145-301 (318)
284 COG0790 FOG: TPR repeat, SEL1 96.6 0.33 7.1E-06 53.2 21.8 152 602-777 92-270 (292)
285 PF04910 Tcf25: Transcriptiona 96.5 0.11 2.4E-06 57.9 17.8 150 119-268 31-227 (360)
286 COG0790 FOG: TPR repeat, SEL1 96.4 0.43 9.4E-06 52.2 21.3 187 531-737 53-266 (292)
287 PF04781 DUF627: Protein of un 96.3 0.027 5.9E-07 49.5 8.6 106 46-157 2-107 (111)
288 PRK15180 Vi polysaccharide bio 96.3 2.4 5.3E-05 46.8 24.8 127 138-268 299-425 (831)
289 PF03704 BTAD: Bacterial trans 96.2 0.095 2E-06 50.5 13.4 62 163-225 63-124 (146)
290 PF08424 NRDE-2: NRDE-2, neces 96.2 0.24 5.3E-06 54.6 17.9 116 219-334 7-131 (321)
291 PF13174 TPR_6: Tetratricopept 96.1 0.012 2.5E-07 39.8 4.6 31 746-776 2-32 (33)
292 KOG2062 26S proteasome regulat 96.1 4.2 9.1E-05 47.7 41.9 170 42-225 61-238 (929)
293 KOG1308 Hsp70-interacting prot 96.1 0.0031 6.7E-08 66.1 2.2 83 110-192 130-212 (377)
294 KOG1308 Hsp70-interacting prot 96.0 0.0032 6.9E-08 66.0 2.0 94 134-228 120-213 (377)
295 PF03704 BTAD: Bacterial trans 96.0 0.14 3.1E-06 49.2 13.5 61 344-404 64-124 (146)
296 PF13181 TPR_8: Tetratricopept 96.0 0.012 2.6E-07 40.1 4.1 31 745-775 2-32 (34)
297 PF13176 TPR_7: Tetratricopept 95.9 0.012 2.6E-07 40.8 3.9 28 710-737 1-28 (36)
298 KOG3364 Membrane protein invol 95.9 0.087 1.9E-06 47.7 10.1 76 707-782 31-109 (149)
299 PF13174 TPR_6: Tetratricopept 95.9 0.013 2.8E-07 39.5 4.0 32 709-740 1-32 (33)
300 KOG0128 RNA-binding protein SA 95.9 5.6 0.00012 47.5 38.2 409 141-618 92-528 (881)
301 KOG1464 COP9 signalosome, subu 95.9 0.88 1.9E-05 46.3 18.1 48 143-190 42-93 (440)
302 KOG2422 Uncharacterized conser 95.8 1.2 2.5E-05 50.7 20.5 156 532-700 251-450 (665)
303 KOG1144 Translation initiation 95.8 0.2 4.3E-06 58.1 15.0 15 880-894 245-259 (1064)
304 KOG1463 26S proteasome regulat 95.8 2.7 5.8E-05 44.6 21.8 170 236-408 133-319 (411)
305 KOG2422 Uncharacterized conser 95.7 0.76 1.7E-05 52.0 18.7 158 108-266 252-451 (665)
306 PF13181 TPR_8: Tetratricopept 95.7 0.018 3.9E-07 39.2 4.1 30 199-228 3-32 (34)
307 KOG1463 26S proteasome regulat 95.6 3.8 8.1E-05 43.6 23.5 163 272-434 132-312 (411)
308 KOG2114 Vacuolar assembly/sort 95.6 7.2 0.00016 46.7 31.7 250 275-588 341-596 (933)
309 PF09613 HrpB1_HrpK: Bacterial 95.5 0.18 4E-06 47.9 11.2 85 129-214 11-95 (160)
310 COG5159 RPN6 26S proteasome re 95.5 3.7 8E-05 42.5 22.8 163 272-434 129-310 (421)
311 COG4649 Uncharacterized protei 95.4 0.56 1.2E-05 44.6 13.8 137 649-788 72-210 (221)
312 KOG1464 COP9 signalosome, subu 95.4 1.5 3.2E-05 44.8 17.6 202 355-619 40-263 (440)
313 KOG3783 Uncharacterized conser 95.3 3.4 7.4E-05 47.0 21.9 251 251-552 250-524 (546)
314 COG5159 RPN6 26S proteasome re 95.3 2 4.4E-05 44.3 18.3 215 309-583 7-236 (421)
315 PF09986 DUF2225: Uncharacteri 95.1 0.2 4.4E-06 51.2 11.1 95 683-777 91-198 (214)
316 PF14853 Fis1_TPR_C: Fis1 C-te 95.1 0.1 2.3E-06 39.5 6.6 38 745-782 2-39 (53)
317 PF09613 HrpB1_HrpK: Bacterial 94.8 0.37 7.9E-06 45.9 11.1 85 84-179 11-95 (160)
318 PF04781 DUF627: Protein of un 94.8 0.37 8.1E-06 42.5 10.2 27 169-195 3-29 (111)
319 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.15 3.2E-06 38.7 6.4 41 130-170 3-43 (53)
320 PF14561 TPR_20: Tetratricopep 94.6 0.35 7.5E-06 41.7 9.6 65 148-212 8-73 (90)
321 KOG1144 Translation initiation 94.6 0.35 7.6E-06 56.2 12.0 42 842-883 215-256 (1064)
322 KOG3824 Huntingtin interacting 94.4 0.18 3.8E-06 52.1 8.4 65 106-170 128-192 (472)
323 PRK10941 hypothetical protein; 94.4 0.35 7.6E-06 51.2 11.1 76 345-420 184-259 (269)
324 PRK10941 hypothetical protein; 94.1 0.36 7.8E-06 51.1 10.4 58 112-169 199-256 (269)
325 PF13176 TPR_7: Tetratricopept 94.1 0.081 1.8E-06 36.6 3.8 28 746-773 1-28 (36)
326 KOG0163 Myosin class VI heavy 93.8 8.3 0.00018 45.1 20.6 28 747-774 819-846 (1259)
327 COG4649 Uncharacterized protei 93.8 5.9 0.00013 38.0 16.3 125 135-262 65-195 (221)
328 KOG3364 Membrane protein invol 93.6 0.97 2.1E-05 41.2 10.5 80 161-240 31-114 (149)
329 PF14561 TPR_20: Tetratricopep 93.5 0.57 1.2E-05 40.4 8.8 65 113-177 7-73 (90)
330 PF12968 DUF3856: Domain of Un 93.3 2.7 5.9E-05 37.4 12.4 98 89-188 6-126 (144)
331 KOG3807 Predicted membrane pro 93.2 11 0.00024 39.9 18.8 200 201-418 188-404 (556)
332 PRK11619 lytic murein transgly 93.2 26 0.00056 42.7 41.4 213 346-577 245-463 (644)
333 KOG1538 Uncharacterized conser 93.0 19 0.0004 41.8 21.6 26 519-544 804-829 (1081)
334 TIGR02561 HrpB1_HrpK type III 92.9 2.8 6.2E-05 39.3 12.7 83 131-214 13-95 (153)
335 PF10602 RPN7: 26S proteasome 92.8 0.6 1.3E-05 46.3 9.2 65 269-333 37-101 (177)
336 KOG3824 Huntingtin interacting 92.8 0.35 7.6E-06 50.0 7.5 69 169-238 123-191 (472)
337 TIGR02561 HrpB1_HrpK type III 92.8 1.2 2.5E-05 41.8 10.1 68 112-179 28-95 (153)
338 KOG3783 Uncharacterized conser 92.8 22 0.00048 40.7 29.3 235 514-776 262-523 (546)
339 PF12968 DUF3856: Domain of Un 92.7 3.4 7.4E-05 36.8 12.1 96 678-773 18-129 (144)
340 smart00028 TPR Tetratricopepti 92.7 0.18 4E-06 33.0 3.9 28 710-737 3-30 (34)
341 KOG1029 Endocytic adaptor prot 92.6 1.5 3.2E-05 51.1 12.6 14 865-878 357-370 (1118)
342 KOG1538 Uncharacterized conser 92.6 8.2 0.00018 44.5 18.1 83 306-402 748-830 (1081)
343 PF10602 RPN7: 26S proteasome 92.4 1.5 3.2E-05 43.6 11.3 105 670-776 37-145 (177)
344 smart00028 TPR Tetratricopepti 92.4 0.22 4.7E-06 32.6 4.0 31 130-160 3-33 (34)
345 KOG3807 Predicted membrane pro 92.4 14 0.0003 39.2 18.1 103 673-782 279-400 (556)
346 PF09986 DUF2225: Uncharacteri 92.3 1.4 3.1E-05 45.1 11.3 116 49-170 86-208 (214)
347 PRK11619 lytic murein transgly 91.9 37 0.0008 41.4 40.2 316 41-404 34-374 (644)
348 KOG0163 Myosin class VI heavy 91.8 13 0.00028 43.7 18.6 24 710-737 748-771 (1259)
349 COG3914 Spy Predicted O-linked 91.6 2.7 5.8E-05 48.2 13.1 128 112-240 49-185 (620)
350 COG5116 RPN2 26S proteasome re 91.5 30 0.00066 39.6 25.4 192 23-228 40-239 (926)
351 PRK12798 chemotaxis protein; R 91.5 26 0.00055 39.1 20.0 191 586-792 111-304 (421)
352 PF13041 PPR_2: PPR repeat fam 91.4 0.83 1.8E-05 34.3 6.4 48 707-755 2-49 (50)
353 PF11207 DUF2989: Protein of u 91.3 14 0.0003 36.9 16.1 77 683-764 120-198 (203)
354 COG5191 Uncharacterized conser 90.9 0.54 1.2E-05 48.9 6.4 89 151-240 96-185 (435)
355 COG3914 Spy Predicted O-linked 90.5 9.4 0.0002 44.0 16.0 131 145-279 48-187 (620)
356 KOG1310 WD40 repeat protein [G 90.5 0.68 1.5E-05 51.7 7.0 88 140-228 386-476 (758)
357 COG5191 Uncharacterized conser 90.1 0.49 1.1E-05 49.2 5.2 78 705-784 104-182 (435)
358 PF13374 TPR_10: Tetratricopep 89.6 0.72 1.6E-05 32.8 4.6 29 709-737 3-31 (42)
359 COG4976 Predicted methyltransf 89.6 0.52 1.1E-05 47.0 4.8 59 171-230 4-62 (287)
360 PF10579 Rapsyn_N: Rapsyn N-te 89.6 1.9 4.2E-05 35.4 7.1 60 712-771 10-70 (80)
361 PF12862 Apc5: Anaphase-promot 89.3 2.5 5.4E-05 36.9 8.6 65 680-744 9-77 (94)
362 PF04190 DUF410: Protein of un 89.3 33 0.00072 36.5 21.1 158 106-282 69-242 (260)
363 KOG0529 Protein geranylgeranyl 89.3 33 0.00071 38.1 18.3 162 112-273 47-234 (421)
364 KOG1310 WD40 repeat protein [G 88.6 2.1 4.6E-05 48.0 8.9 89 107-195 387-478 (758)
365 PF12854 PPR_1: PPR repeat 88.5 0.9 2E-05 30.8 4.1 29 38-66 5-33 (34)
366 KOG2561 Adaptor protein NUB1, 88.4 13 0.00029 40.9 14.5 25 749-773 272-296 (568)
367 COG4976 Predicted methyltransf 88.4 0.68 1.5E-05 46.2 4.6 61 528-588 4-64 (287)
368 KOG1839 Uncharacterized protei 88.3 3.3 7.2E-05 52.1 11.4 168 345-547 935-1127(1236)
369 PF04053 Coatomer_WDAD: Coatom 88.1 24 0.00052 40.7 17.7 131 135-294 268-399 (443)
370 KOG2581 26S proteasome regulat 88.0 47 0.001 36.7 18.7 135 649-783 140-286 (493)
371 PF13374 TPR_10: Tetratricopep 87.9 1 2.3E-05 31.9 4.4 30 744-773 2-31 (42)
372 KOG2114 Vacuolar assembly/sort 87.7 75 0.0016 38.6 26.2 54 559-615 711-764 (933)
373 PTZ00266 NIMA-related protein 87.5 6.7 0.00014 49.6 13.6 9 1011-1019 602-610 (1021)
374 KOG1839 Uncharacterized protei 87.4 4.8 0.0001 50.7 12.0 141 264-404 969-1127(1236)
375 COG2912 Uncharacterized conser 87.3 3.2 6.9E-05 43.3 9.0 63 109-171 196-258 (269)
376 PF04097 Nic96: Nup93/Nic96; 87.1 64 0.0014 39.2 21.5 81 348-435 264-353 (613)
377 KOG2581 26S proteasome regulat 87.0 53 0.0012 36.2 19.4 104 306-409 170-280 (493)
378 PF04053 Coatomer_WDAD: Coatom 86.9 15 0.00032 42.4 15.1 155 529-733 271-427 (443)
379 PF15015 NYD-SP12_N: Spermatog 86.4 3.2 7E-05 45.3 8.6 104 39-153 171-287 (569)
380 COG1747 Uncharacterized N-term 86.2 67 0.0015 36.6 26.7 99 158-263 62-160 (711)
381 PF10579 Rapsyn_N: Rapsyn N-te 85.6 7.5 0.00016 32.0 8.3 60 200-259 9-68 (80)
382 KOG1832 HIV-1 Vpr-binding prot 85.0 0.75 1.6E-05 54.3 3.4 15 814-828 1257-1271(1516)
383 COG3629 DnrI DNA-binding trans 85.0 17 0.00036 38.7 13.1 61 130-190 155-215 (280)
384 PF15015 NYD-SP12_N: Spermatog 85.0 19 0.00041 39.7 13.4 86 168-256 182-284 (569)
385 PF12862 Apc5: Anaphase-promot 84.6 6.4 0.00014 34.3 8.4 55 138-192 8-71 (94)
386 PF13041 PPR_2: PPR repeat fam 84.5 2.8 6.2E-05 31.3 5.4 45 587-631 3-47 (50)
387 PF10516 SHNi-TPR: SHNi-TPR; 84.3 2.1 4.5E-05 29.9 4.1 29 709-737 2-30 (38)
388 KOG4014 Uncharacterized conser 83.6 46 0.00099 32.5 14.6 62 553-615 34-101 (248)
389 KOG0529 Protein geranylgeranyl 83.6 35 0.00076 37.8 14.9 135 103-238 84-236 (421)
390 PF07721 TPR_4: Tetratricopept 83.5 1.6 3.6E-05 27.4 3.1 22 710-731 3-24 (26)
391 PF04190 DUF410: Protein of un 83.5 66 0.0014 34.2 21.9 139 516-681 87-240 (260)
392 PF07720 TPR_3: Tetratricopept 83.3 3.9 8.5E-05 28.2 5.0 19 166-184 5-23 (36)
393 PF07720 TPR_3: Tetratricopept 82.9 3.6 7.8E-05 28.3 4.8 33 129-161 2-36 (36)
394 COG3629 DnrI DNA-binding trans 82.8 7.7 0.00017 41.2 9.5 66 340-405 151-216 (280)
395 PF12854 PPR_1: PPR repeat 81.8 3.2 7E-05 28.1 4.3 29 741-769 4-32 (34)
396 COG2912 Uncharacterized conser 81.6 8.3 0.00018 40.3 9.0 76 345-420 184-259 (269)
397 PF11207 DUF2989: Protein of u 80.9 16 0.00034 36.5 10.2 53 342-395 141-197 (203)
398 PF07721 TPR_4: Tetratricopept 80.7 2.8 6.1E-05 26.3 3.4 25 41-65 2-26 (26)
399 PRK12798 chemotaxis protein; R 80.5 1E+02 0.0023 34.5 22.1 30 342-371 257-286 (421)
400 KOG2412 Nuclear-export-signal 79.8 1.2E+02 0.0026 34.9 19.5 11 746-756 122-132 (591)
401 PLN03237 DNA topoisomerase 2; 79.8 28 0.00061 45.6 14.5 31 1001-1031 1259-1293(1465)
402 KOG1832 HIV-1 Vpr-binding prot 79.4 1.1 2.3E-05 53.1 2.0 14 1057-1070 1488-1501(1516)
403 PF11817 Foie-gras_1: Foie gra 79.2 11 0.00023 39.9 9.4 64 708-771 178-245 (247)
404 COG4941 Predicted RNA polymera 79.1 58 0.0013 35.1 14.0 187 568-782 211-403 (415)
405 PF10516 SHNi-TPR: SHNi-TPR; 78.9 3.7 8E-05 28.7 3.7 30 554-583 2-31 (38)
406 KOG3654 Uncharacterized CH dom 78.5 20 0.00043 40.0 10.9 12 1006-1017 512-523 (708)
407 PF12739 TRAPPC-Trs85: ER-Golg 77.8 60 0.0013 37.3 15.6 171 45-228 213-401 (414)
408 PF00244 14-3-3: 14-3-3 protei 77.5 41 0.00088 35.2 12.9 57 165-221 4-61 (236)
409 COG1747 Uncharacterized N-term 77.3 1.4E+02 0.0031 34.2 26.2 98 125-226 63-160 (711)
410 PF06936 Selenoprotein_S: Sele 75.9 21 0.00045 35.5 9.5 16 911-926 112-127 (190)
411 PF10255 Paf67: RNA polymerase 75.5 4.6 0.0001 45.3 5.5 63 163-225 123-192 (404)
412 PF10255 Paf67: RNA polymerase 74.0 15 0.00032 41.4 8.9 66 44-121 126-191 (404)
413 PF10446 DUF2457: Protein of u 73.6 5 0.00011 44.3 4.9 11 1015-1025 107-117 (458)
414 PRK06568 F0F1 ATP synthase sub 73.4 89 0.0019 30.0 13.2 47 832-878 26-72 (154)
415 PF10037 MRP-S27: Mitochondria 73.4 1.8E+02 0.0038 33.4 23.7 92 559-664 72-167 (429)
416 PF11214 Med2: Mediator comple 73.3 64 0.0014 28.3 10.4 24 841-864 52-75 (105)
417 KOG2063 Vacuolar assembly/sort 72.9 2.6E+02 0.0056 35.1 20.2 29 305-333 684-712 (877)
418 KOG2063 Vacuolar assembly/sort 72.6 2.3E+02 0.0051 35.5 19.1 181 25-224 493-711 (877)
419 KOG2412 Nuclear-export-signal 72.2 43 0.00093 38.3 11.7 10 869-878 222-231 (591)
420 PF09477 Type_III_YscG: Bacter 72.0 71 0.0015 28.3 11.1 84 134-223 12-95 (116)
421 TIGR03504 FimV_Cterm FimV C-te 71.7 4.6 0.0001 29.3 2.9 25 712-736 3-27 (44)
422 KOG4814 Uncharacterized conser 71.5 2.2E+02 0.0047 33.7 31.3 99 307-405 356-457 (872)
423 COG0711 AtpF F0F1-type ATP syn 70.8 1.1E+02 0.0023 29.8 13.1 46 832-877 28-73 (161)
424 PRK09174 F0F1 ATP synthase sub 70.1 93 0.002 31.6 12.9 43 836-878 79-121 (204)
425 smart00386 HAT HAT (Half-A-TPR 69.2 11 0.00024 24.5 4.4 28 212-239 2-29 (33)
426 COG4455 ImpE Protein of avirul 68.4 54 0.0012 33.1 10.2 61 350-410 9-69 (273)
427 TIGR03504 FimV_Cterm FimV C-te 67.9 9.6 0.00021 27.7 3.8 26 748-773 3-28 (44)
428 KOG4691 Uncharacterized conser 67.8 94 0.002 30.3 11.2 52 868-921 120-171 (227)
429 KOG4521 Nuclear pore complex, 67.8 3.5E+02 0.0076 34.6 18.9 30 197-226 920-949 (1480)
430 PRK08475 F0F1 ATP synthase sub 67.7 1.2E+02 0.0026 29.7 12.8 43 836-878 48-90 (167)
431 COG4941 Predicted RNA polymera 66.9 1.9E+02 0.0042 31.3 16.1 188 213-417 212-406 (415)
432 PRK06231 F0F1 ATP synthase sub 66.2 1.2E+02 0.0027 30.8 13.0 44 835-878 73-116 (205)
433 KOG4422 Uncharacterized conser 66.0 2.3E+02 0.005 31.8 34.9 162 122-293 201-381 (625)
434 PF00244 14-3-3: 14-3-3 protei 65.9 1.8E+02 0.0038 30.5 16.4 61 200-262 4-65 (236)
435 KOG3054 Uncharacterized conser 65.8 69 0.0015 32.5 10.3 21 889-909 146-166 (299)
436 COG3947 Response regulator con 65.6 23 0.00049 37.2 7.4 58 346-403 283-340 (361)
437 COG3947 Response regulator con 65.3 26 0.00056 36.8 7.7 55 168-223 285-339 (361)
438 KOG0687 26S proteasome regulat 65.2 1.4E+02 0.003 32.2 13.0 101 127-227 103-211 (393)
439 PTZ00121 MAEBL; Provisional 64.7 80 0.0017 40.7 12.8 16 114-129 136-151 (2084)
440 smart00386 HAT HAT (Half-A-TPR 64.1 17 0.00036 23.6 4.4 27 143-169 2-28 (33)
441 KOG0686 COP9 signalosome, subu 63.8 1.1E+02 0.0024 34.0 12.3 65 269-333 151-215 (466)
442 PF12739 TRAPPC-Trs85: ER-Golg 63.8 2.7E+02 0.0059 32.0 16.9 24 311-334 376-399 (414)
443 PF10373 EST1_DNA_bind: Est1 D 63.6 2.1E+02 0.0046 30.5 16.9 62 654-720 1-62 (278)
444 KOG2393 Transcription initiati 63.5 11 0.00024 42.8 5.1 12 954-965 273-284 (555)
445 PRK14472 F0F1 ATP synthase sub 63.5 1.6E+02 0.0034 29.1 13.0 43 836-878 44-86 (175)
446 PRK13454 F0F1 ATP synthase sub 63.4 1.6E+02 0.0036 29.2 13.1 43 836-878 57-99 (181)
447 PF07946 DUF1682: Protein of u 63.2 61 0.0013 35.7 10.9 19 806-824 230-248 (321)
448 KOG3054 Uncharacterized conser 62.6 75 0.0016 32.2 9.9 7 872-878 138-144 (299)
449 COG4455 ImpE Protein of avirul 62.5 50 0.0011 33.3 8.7 57 139-195 12-68 (273)
450 KOG4814 Uncharacterized conser 62.0 3.3E+02 0.0072 32.3 36.2 87 106-192 366-458 (872)
451 PF04097 Nic96: Nup93/Nic96; 61.8 1.6E+02 0.0036 35.8 15.2 241 134-412 264-540 (613)
452 KOG0276 Vesicle coat complex C 61.1 1.1E+02 0.0024 35.8 12.2 28 127-154 665-692 (794)
453 PF01535 PPR: PPR repeat; Int 60.5 9.5 0.00021 24.6 2.6 28 42-69 2-29 (31)
454 CHL00118 atpG ATP synthase CF0 60.4 1.7E+02 0.0036 28.3 13.1 43 836-878 48-90 (156)
455 cd00280 TRFH Telomeric Repeat 60.4 1.1E+02 0.0023 30.2 10.3 128 40-171 13-153 (200)
456 PF14929 TAF1_subA: TAF RNA Po 60.2 3.6E+02 0.0078 32.1 22.3 138 178-331 300-438 (547)
457 PF13812 PPR_3: Pentatricopept 59.3 8.6 0.00019 25.5 2.3 28 41-68 2-29 (34)
458 PF10373 EST1_DNA_bind: Est1 D 58.8 32 0.0007 37.0 7.9 60 181-241 1-60 (278)
459 TIGR03362 VI_chp_7 type VI sec 58.8 2.7E+02 0.0059 30.3 16.8 58 348-405 219-279 (301)
460 PF06098 Radial_spoke_3: Radia 58.8 1.6E+02 0.0034 31.7 12.5 12 846-857 138-149 (291)
461 PF14863 Alkyl_sulf_dimr: Alky 58.0 31 0.00068 32.6 6.4 52 126-177 68-119 (141)
462 PF09670 Cas_Cas02710: CRISPR- 57.9 1.8E+02 0.0038 33.0 13.7 62 521-582 133-198 (379)
463 KOG0546 HSP90 co-chaperone CPR 57.8 15 0.00032 39.8 4.6 75 343-417 276-350 (372)
464 PF10037 MRP-S27: Mitochondria 57.4 1.4E+02 0.0031 34.1 12.6 105 666-773 63-167 (429)
465 CHL00019 atpF ATP synthase CF0 57.2 2.1E+02 0.0046 28.5 13.3 43 836-878 50-92 (184)
466 PF11817 Foie-gras_1: Foie gra 57.0 2.6E+02 0.0056 29.5 17.9 62 518-579 177-244 (247)
467 PLN03086 PRLI-interacting fact 56.1 67 0.0015 37.9 10.0 14 866-879 22-35 (567)
468 PF01535 PPR: PPR repeat; Int 56.1 16 0.00035 23.5 3.1 26 711-736 3-28 (31)
469 PRK13461 F0F1 ATP synthase sub 56.1 2E+02 0.0043 27.9 13.1 43 836-878 31-73 (159)
470 PLN03086 PRLI-interacting fact 55.9 46 0.00099 39.2 8.6 21 860-880 9-29 (567)
471 PF13025 DUF3886: Protein of u 55.7 46 0.001 26.9 5.9 24 869-892 20-43 (70)
472 COG5536 BET4 Protein prenyltra 55.2 1.5E+02 0.0033 31.2 11.0 167 108-275 46-234 (328)
473 PF05890 Ebp2: Eukaryotic rRNA 55.0 2.5E+02 0.0054 30.0 13.2 19 807-825 83-101 (271)
474 KOG0686 COP9 signalosome, subu 54.9 49 0.0011 36.6 8.0 61 308-368 153-213 (466)
475 KOG0546 HSP90 co-chaperone CPR 54.7 15 0.00032 39.8 4.1 127 446-596 226-352 (372)
476 PRK14475 F0F1 ATP synthase sub 54.4 2.2E+02 0.0048 27.9 13.0 42 837-878 37-78 (167)
477 PRK14474 F0F1 ATP synthase sub 54.3 2.3E+02 0.005 29.9 12.9 43 836-878 31-73 (250)
478 TIGR00756 PPR pentatricopeptid 54.0 28 0.00061 22.9 4.2 26 711-736 3-28 (35)
479 KOG0066 eIF2-interacting prote 53.5 10 0.00022 41.8 2.7 21 1005-1025 90-110 (807)
480 KOG2357 Uncharacterized conser 53.4 1.7E+02 0.0037 32.5 11.7 15 811-825 287-301 (440)
481 PRK14471 F0F1 ATP synthase sub 53.1 2.3E+02 0.0049 27.6 13.2 44 835-878 33-76 (164)
482 KOG4279 Serine/threonine prote 53.0 1.8E+02 0.0038 35.0 12.3 125 553-683 201-334 (1226)
483 KOG4364 Chromatin assembly fac 53.0 1.5E+02 0.0032 35.0 11.6 11 1030-1040 502-512 (811)
484 PRK08476 F0F1 ATP synthase sub 52.9 2.1E+02 0.0045 27.1 13.1 44 835-878 32-75 (141)
485 PF12921 ATP13: Mitochondrial 52.8 1.5E+02 0.0033 27.4 10.0 79 672-750 5-94 (126)
486 KOG1497 COP9 signalosome, subu 52.8 1.7E+02 0.0038 31.4 11.2 101 41-154 104-210 (399)
487 TIGR00756 PPR pentatricopeptid 52.3 19 0.00042 23.7 3.2 28 42-69 2-29 (35)
488 TIGR02508 type_III_yscG type I 52.2 1.6E+02 0.0036 25.8 10.2 75 143-224 20-95 (115)
489 cd02680 MIT_calpain7_2 MIT: do 52.0 1.2E+02 0.0026 25.1 8.0 21 720-740 18-38 (75)
490 PF09670 Cas_Cas02710: CRISPR- 51.9 2E+02 0.0043 32.6 12.8 61 166-226 135-198 (379)
491 PRK07352 F0F1 ATP synthase sub 51.3 2.5E+02 0.0055 27.7 13.1 42 837-878 46-87 (174)
492 PRK15490 Vi polysaccharide bio 51.3 62 0.0013 38.3 8.7 79 106-186 20-98 (578)
493 KOG4279 Serine/threonine prote 51.1 1.7E+02 0.0036 35.2 11.7 198 161-387 200-411 (1226)
494 KOG3634 Troponin [Cytoskeleton 50.8 85 0.0018 33.5 8.6 76 856-931 95-178 (361)
495 cd09243 BRO1_Brox_like Protein 50.6 95 0.0021 34.6 9.7 76 779-857 110-192 (353)
496 PF09205 DUF1955: Domain of un 50.5 2.1E+02 0.0046 26.6 13.4 112 649-772 16-148 (161)
497 PF15346 ARGLU: Arginine and g 50.5 2E+02 0.0043 27.4 10.2 63 851-914 72-134 (149)
498 smart00299 CLH Clathrin heavy 50.2 2.2E+02 0.0048 26.6 14.5 128 347-534 12-140 (140)
499 PF15236 CCDC66: Coiled-coil d 49.3 2.5E+02 0.0054 27.0 11.3 70 850-919 46-115 (157)
500 PF07946 DUF1682: Protein of u 49.3 86 0.0019 34.6 9.2 64 847-910 254-320 (321)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-119 Score=1008.37 Aligned_cols=994 Identities=40% Similarity=0.649 Sum_probs=889.4
Q ss_pred CceeeeccCCCCceEEEeCCCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001414 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1082)
Q Consensus 1 ~~~~~ip~~~~~~~v~i~~~~l~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~ 80 (1082)
|+||+|||+++++||+||+++|| |++||++||+.|.+++++|+.+|.+||++|++++|+.||++++.. ....|.+...
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~-~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLID-ANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhc-ccchhcchHH
Confidence 57999999999999999999999 999999999999999999999999999999999999999999843 4456888899
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al~~~ 158 (1082)
+++.+++.||.+|..+|...+.+..++..+..|+.+|+.+..++......|+..+..++..|.. +.|...|..+++..
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988899999999999999999999999999999999999988875 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
|+|+.++++.|++.+..|+|..|+.+|++++..+|...+++++++|.|++++|+.+.|+..|.++++++|.++.+++.||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001414 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1082)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1082)
.+.+...+...+..++..+.+++..+|.+|.+++.|+.+|+..|+|..+..+...++..+...+..++++|++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 001414 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1082)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1082)
|+|++|..+|.++++. .+..++.+++++|++|+..|+++.|+.+|+++++..|++.+++..||.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999986 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 468 (1082)
Q Consensus 395 A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 468 (1082)
|..++.+++...|.+..+|+.++.++..+++..++.+|.. ......++++++++|..++..|++..|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 9999999999999999999999999988888888888887 3455599999999999999999999999999999
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001414 469 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+....-.. .... ....+.+..||+|+++...+++..|...|..+++.
T Consensus 479 ~~~~~~~~--------------------------------n~de-~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVA--------------------------------NKDE-GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhc--------------------------------Cccc-cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 87411000 0000 01234778999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcC-CCCcHHHHHH
Q 001414 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLS 627 (1082)
Q Consensus 549 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~d~~~~~~ 627 (1082)
+|.++++|+++|.+....++..+|..+++.++..+..+|.+|.++|.+|++...|..|.+.|+.+++.. ..+|+|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988854 3359999999
Q ss_pred hHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001414 628 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707 (1082)
Q Consensus 628 Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 707 (1082)
|||+ |+...+...+++..+++++++|++.|.++|+.+|.|.+|.+++|++++..|++..|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9998 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 708 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
+++|+|+||||+.+|+|..||++|+.|+++|...+++.++.+||++|+..|.+.+|+.++.+|+++.|.++.+.||+|++
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 89999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001414 788 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE-EQQ 866 (1082)
Q Consensus 788 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-e~~ 866 (1082)
+++.+..+++..++|+++|..++.+|+.|+++|++|+..+++ +|+++.+.+++++|+++++++..|+.++++. |++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998864 8999999999999999999999999988754 445
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCchhhhhhccCCCCccccc
Q 001414 867 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH 943 (1082)
Q Consensus 867 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1082)
.++|+ +.+++.++.+|++|++||++..++..+++++|.++..+.++.|.+..+.|+.+++..+++ .+++ .
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~---~~~~----~ 909 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKR---GDDS----D 909 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCC---CCcC----c
Confidence 54555 566666778889999999999999888888888888888889999999999998876432 2112 2
Q ss_pred cccccccCCcccccccCcCcc-ccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCCC
Q 001414 944 SEKRRRKGGKRRKKDKSSRSH-YETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAAAGLEDS 1020 (1082)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 1020 (1082)
+.-++||||+||||++.++.+ +..+++|.+.+++...+........+++++.+. ...+-+++++.++ ..+..+++++
T Consensus 910 ~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~~ 989 (1018)
T KOG2002|consen 910 SDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREASEESDRP 989 (1018)
T ss_pred ccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchhhccCCc
Confidence 444555666655554333333 344445667777777777776666665333222 2233344445555 8888999887
Q ss_pred -CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001414 1021 -DVDDEMAPSITAARRRRALSESDDDEPF 1048 (1082)
Q Consensus 1021 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1082)
|+|.|..+++. .||++++|.|||..++
T Consensus 990 ~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 990 IESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred cccccccCcccc-cccchhhccccccccc
Confidence 77777888888 9999999999987653
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-52 Score=538.49 Aligned_cols=710 Identities=20% Similarity=0.233 Sum_probs=496.3
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHH
Q 001414 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (1082)
Q Consensus 32 ~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~ 111 (1082)
++...|.....|+.+|..++.+|++++|+.+++.++...+ ....++..+|.++...|+..
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~----------- 210 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIE----------- 210 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhcCCHH-----------
Confidence 4455667777888888888888888888888887755422 22345666677777766655
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+..|++++..+|.++.+++.++.+++..|++++|...++.++...|+++.+++..|.+++..|++++|+..|++++..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666665556666666666666666665555555555555555555555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
+|+. ...++.+|.++..+|+++.|...|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 366 (899)
T TIGR02917 291 APEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAAL 366 (899)
T ss_pred CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 5554 33444555555555555555555555555555555555555555555554 4555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----------------
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---------------- 335 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 335 (1082)
..++.++...|++++|..++.+++.. .|..+.+++.+|.++...|++++|+..|.+++...
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 55555555555555555555444432 13333344444444444444444433333332211
Q ss_pred ---------------CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 336 ---------------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1082)
Q Consensus 336 ---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1082)
...|.....+..+|.++...|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 03455566677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001414 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 478 (1082)
Q Consensus 401 kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 478 (1082)
+++...|.+..++..++.++ ..|++++|+..+.+ ....+.....+..++.++...|++++|+.++++++...+....
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 602 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE- 602 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH-
Confidence 77777777777777777777 77777777777776 3344555566677777777777777777777777653321100
Q ss_pred ccccchhhhhhhhhHHh----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHH
Q 001414 479 DSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 554 (1082)
Q Consensus 479 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 554 (1082)
........... ......+..+.. ..|.++.+++.++.++...|++++|...|++++..+|++..
T Consensus 603 ------~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 603 ------AWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 00000000000 011222222221 45677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHH
Q 001414 555 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 634 (1082)
Q Consensus 555 a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~ 634 (1082)
++..++.++...|++++|+.+++.+....|.++..+..+|.++...|++++|+..|++++...|.. ..+..++.+ |.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HH
Confidence 999999999999999999999999999999999999999999999999999999999999887764 556677877 77
Q ss_pred HHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 001414 635 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714 (1082)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 714 (1082)
.. |++++|...+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| +++.++.++
T Consensus 748 ~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l 810 (899)
T TIGR02917 748 AS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNL 810 (899)
T ss_pred HC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Confidence 77 9999999999999999999999999999999999999999999999999887 678999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHh
Q 001414 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS 794 (1082)
Q Consensus 715 a~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~ 794 (1082)
|+++...|+ .+|+.+|++++.. .|.++.++..+|.+++..|++++|+.+|+++++..|.++.++++++.++...|.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~- 886 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR- 886 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-
Confidence 999999999 8899999999987 577788899999999999999999999999999999999999999998776653
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001414 795 TLQKTRRTADEVRSTVAELENAVRVFSHL 823 (1082)
Q Consensus 795 ~l~~~~~~~~~~~~a~~~l~~A~~~f~~l 823 (1082)
.++|+++|..+
T Consensus 887 ------------------~~~A~~~~~~~ 897 (899)
T TIGR02917 887 ------------------KAEARKELDKL 897 (899)
T ss_pred ------------------HHHHHHHHHHH
Confidence 66677766655
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-51 Score=528.94 Aligned_cols=732 Identities=20% Similarity=0.216 Sum_probs=594.0
Q ss_pred CCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh----------------------h---
Q 001414 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY----------------------Y--- 75 (1082)
Q Consensus 21 ~l~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~----------------------~--- 75 (1082)
+...-...+...+...|.....|+.+|.+|+.+|++++|+..+++++...+... +
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~ 116 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhccc
Confidence 334445566677788999999999999999999999999999999876533210 0
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 76 -ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154 (1082)
Q Consensus 76 -~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1082)
....+....++..+|.+|...| ++.+|+..|++++..+|.++.+++.+|.+++..|++++|+..++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 117 TLLDDEGAAELLALRGLAYLGLG-----------QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred ccCCchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0011122233444444444444 4559999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
+..+|.+..+++.+|.+++..|++++|+..|++++..+|.+ ..+++.++.++...|++++|...+.+++...|.++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 264 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH 264 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999999999999999999999999998 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 001414 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1082)
Q Consensus 235 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~ 314 (1082)
+..|.++...|+ +.+|+..|.+++..+|.+..++..++.+++..|+++.|...+..++... |....++..++.+
T Consensus 265 ~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~ 338 (899)
T TIGR02917 265 YLKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASI 338 (899)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 999999999998 9999999999999999999999999999999999999999999998654 5667888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001414 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394 (1082)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 394 (1082)
+...|++++|+..+.+++. ..|.....+..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++
T Consensus 339 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 9999999999999999987 5677778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001414 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472 (1082)
Q Consensus 395 A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 472 (1082)
|+..|.+++...|........++..+ ..|++++|+..+.. ....+..+.++..+|.++...|++++|+.+|.+++...
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 99999999999999988888888888 99999999999998 44556678899999999999999999999999998754
Q ss_pred hhhhhcccccchhhhhhhhhHHh----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001414 473 IWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+.... ........... ......+..+.. ..|.+..++..++.++...|++++|..++.+++..
T Consensus 496 ~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 496 PDFFP-------AAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred CCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32110 00000000000 112223333222 45666777777888887788888888888888877
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHh
Q 001414 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 628 (1082)
Q Consensus 549 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~L 628 (1082)
+|.+...++.++.++...|++++|+.++++++...|.++.+|..+|.++...|++++|+..|++++...|. ++.++..+
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 88777777788888888888888888888888777877888888888888888888888888887777665 56667777
Q ss_pred HhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001414 629 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 708 (1082)
Q Consensus 629 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 708 (1082)
|.+ |... |++++|+..|.+++..+|++..+++.++.++...|++++|+.++..+....| .++
T Consensus 642 ~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~ 703 (899)
T TIGR02917 642 ADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-----KAA 703 (899)
T ss_pred HHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----CCh
Confidence 777 7766 7788888888888888888888888888888888888888888888877776 567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 788 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~ 788 (1082)
.++..+|.++...|++++|+..|+.++... |. ..++..++.++...|++.+|...+++++...|+++.+++++|.++
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC-chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777888888888888888888888888763 22 266777888888888888888888888888888887777777766
Q ss_pred HHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 789 QKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 789 ~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
...+ ..++|..+|.++....
T Consensus 781 ~~~g-------------------~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 781 LAQK-------------------DYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHCc-------------------CHHHHHHHHHHHHHhC
Confidence 5544 4788999999998654
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=404.40 Aligned_cols=632 Identities=17% Similarity=0.163 Sum_probs=523.3
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhc------CCCC--hhhHHHHHHHHHHc-----------CCH
Q 001414 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHE--PSTWVGKGQLLLAK-----------GEV 144 (1082)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~------~p~~--~~~~~~~a~~~~~~-----------g~~ 144 (1082)
.+|..+|.-|...|+.+ +.+.+++.++.. ++.. ..++..+|.-+... ..+
T Consensus 42 e~wi~~AleYy~~gk~e-----------efi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~ 110 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTE-----------EFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELF 110 (1018)
T ss_pred hHHHHHHHHHHhcccHH-----------HHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 46788899999999888 788888877611 1111 12333333333222 236
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 222 (1082)
..|..+|..+-+++-....-++..+..+...|.. +.|...|..++...|.+ ...+++.|.+.+..|+|..|+.+|.+
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHH
Confidence 6788888888777766666666677766666655 99999999999999999 67789999999999999999999999
Q ss_pred HHhhCCCC-HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcc
Q 001414 223 ALQLDPEN-VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL---VEQLTETALAVT 298 (1082)
Q Consensus 223 al~~~p~~-~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~ 298 (1082)
++.++|.. ++..+.+|.++...++ .+.|+..|.++++++|.++.++..|+.+-....+.+. +..++..+.
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~---~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay--- 263 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGM---SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY--- 263 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccc---hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH---
Confidence 99999974 5667889999999999 9999999999999999999999999998888777654 555555554
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH
Q 001414 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CE 377 (1082)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~ 377 (1082)
..++.+|.+...++..|+..|+|..+..+...++......+-....++.+|.+|..+|+|++|..+|..+++.+|++ .-
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 55677889999999999999999999999999997543444556679999999999999999999999999999998 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC----CHHHHHHHHHh-hcCCCCCHHHHHHHHHH
Q 001414 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS----DTGAALDAFKT-KAGEEVPIEVLNNIGVI 451 (1082)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~----~~~~Al~~l~~-~~~~~~~~~~~~~la~~ 451 (1082)
.++.+|..|...|+++.|+.+|++++...|++..+...||.+| ..+ ..+.|..++.+ ....+.+.++|..++.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 443 45677777777 55667888999999998
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh
Q 001414 452 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 531 (1082)
Q Consensus 452 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 531 (1082)
+.... ...++..|..|+..-. .. ..+.-+.++.++|..++.
T Consensus 424 ~e~~d-~~~sL~~~~~A~d~L~---------------------------------~~-----~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 424 LEQTD-PWASLDAYGNALDILE---------------------------------SK-----GKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhcC-hHHHHHHHHHHHHHHH---------------------------------Hc-----CCCCCHHHHHhHHHHHHH
Confidence 86654 4445999999886210 00 122357899999999999
Q ss_pred cCChHHHHHHHHHHHHh-----CCC-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 532 IHDTVAASVLYRLILFK-----YQD-----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~~-----~p~-----~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
.|++..|...|..++.. +++ +....+++|.++...+++..|...|...++.+|...+++..+|-+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 99999999999999876 222 23468999999999999999999999999999999999999997777888
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVL 679 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~ 679 (1082)
+..+|...++.++..... ++.++..+|++ |+.. ..+..|..-|..+++.-- .|+++...||.++
T Consensus 545 ~~~ea~~~lk~~l~~d~~-np~arsl~G~~-~l~k------------~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSS-NPNARSLLGNL-HLKK------------SEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred CcHHHHHHHHHHHhcccC-CcHHHHHHHHH-HHhh------------hhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 999999999999998766 78888889999 8887 677777776766665432 4889999999988
Q ss_pred Hhc------------CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001414 680 AEK------------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 747 (1082)
Q Consensus 680 ~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~ 747 (1082)
... +.+.+|+.+|.+++..+| .+..+-.-+|.|+...|++..|+.+|.++.+. ...++.+|
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-----kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~ 683 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-----KNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVW 683 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-----chhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCcee
Confidence 753 567899999999999998 67778889999999999999999999999986 34568899
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcchhhHHHHHHHHHHH
Q 001414 748 LYLARTHYEAEQWQDCKKSLLRAIHLAP--SNYTLRFDAGVAMQKFSA 793 (1082)
Q Consensus 748 ~~La~~~~~~g~~~eA~~~l~~al~~~p--~~~~~~~nla~~~~~~~~ 793 (1082)
.+||.||...|+|..|++.|+.+++..- +++.+...||-+|...+.
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998754 567888888888766554
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.8e-42 Score=445.22 Aligned_cols=621 Identities=17% Similarity=0.088 Sum_probs=506.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1082)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1082)
...+...+.++...++.+ .|.+.+.+++.++|+++.++..++.+++..|++++|...+++++..+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 345666677777777766 999999999999999999999999999999999999999999999999997
Q ss_pred HHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001414 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 163 ~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
.+. +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678899999999999999999999988873322223334444569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC----
Q 001414 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (1082)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---- 302 (1082)
+|+++.++..+|.++...|+ +.+|+..+.+++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876554332221111111122223333333333222211111
Q ss_pred -------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1082)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1082)
........+|.++...|++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111223568899999999999999999998 678888999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh
Q 001414 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1082)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~ 434 (1082)
+.+|++.. ....+|.++...|++++|+..|++++..+|.+..++..++.++ ..|++++|+..|.+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99987642 2234588899999999999999999999999999999999999 99999999999999
Q ss_pred -hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcC
Q 001414 435 -KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 513 (1082)
Q Consensus 435 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 513 (1082)
....+....++..++.++. .+++++|+.++..+....+. .+. ..
T Consensus 411 aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~------------------~~~----~~------------ 455 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR------------------SID----DI------------ 455 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH------------------HHH----HH------------
Confidence 4455677788888998875 56789999888764331100 000 00
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
........+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+++.+
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 00112345778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCcH---------HHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 594 GDLELKNDDWVKAKETFRAASDATDGKDS---------YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~~~~d~---------~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
+.++...+++++|+..++++......... ...+.+++. +... |++++|+.+++ .
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~----~ 598 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR----Q 598 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH----h
Confidence 99999999999999999986543221111 112344555 5555 99999998876 6
Q ss_pred cCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCH
Q 001414 665 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 744 (1082)
Q Consensus 665 ~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 744 (1082)
+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|...|++++|+..|+.++.. .|.++
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~ 671 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL 671 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh
Confidence 899999999999999999999999999999999998 78999999999999999999999999999886 56778
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 779 (1082)
.++..+|.++...|++++|.++|++++...|.++.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 89999999999999999999999999999887764
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-42 Score=444.85 Aligned_cols=646 Identities=14% Similarity=0.119 Sum_probs=532.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001414 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1082)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~ 116 (1082)
+.+....+..+.....+++.+.|.+.|++++...+ +.+.++..++.+++..|+.+ +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 44666788899999999999999999999877644 34567888899999998888 99999
Q ss_pred HHHHHhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001414 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1082)
Q Consensus 117 ~~~al~~~p~~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1082)
++++++++|.++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|++.
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 56678899999999999999999999988854 2223333344569999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-------------
Q 001414 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1082)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1082)
+|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 78899999999999999999999999987655432221111100001111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1082)
Q Consensus 247 ----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1082)
......|...+.+.....++.......+|..+...|++++|+..|.+++.. .|.++.+++.+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHH
Confidence 111233444444433332222223345688899999999999999999975 4777899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001414 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1082)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1082)
+|+.+|.++++..+..+.. ......+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999843322221 11234568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCC----------CCCHHHHHHHHHHHHHcCCHHHH
Q 001414 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE----------EVPIEVLNNIGVIHFEKGEFESA 461 (1082)
Q Consensus 392 ~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A 461 (1082)
+++|+..|++++..+|.+..++..++.++..+++++|+.++...... ......+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999667889999988762211 11234567789999999999999
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001414 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541 (1082)
Q Consensus 462 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 541 (1082)
+..|++++. ..|.++.+++.+|.+|...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 6788899999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC----------hHHHHHhhhhhhcccchHHHHHHHH
Q 001414 542 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 611 (1082)
Q Consensus 542 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~ 611 (1082)
|++++..+|.++.+++.++.++...+++++|+.+++++.....+. ......++..+...|++++|+.+++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998764322111 1123467888899999999999987
Q ss_pred HhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHH
Q 001414 612 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 691 (1082)
Q Consensus 612 ~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~ 691 (1082)
..|. ++..++.+|.+ |... |++++|+..|++++..+|+++.++.+++.++...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3454 66778889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhccHHHHHHHH
Q 001414 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 767 (1082)
Q Consensus 692 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~----~~~~~~~La~~~~~~g~~~eA~~~l 767 (1082)
|++++...| +++.++..+|.++...|++++|+.+|++++...+..+ +..++..+|+++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998887 7788999999999999999999999999998753322 2456677899999999999999999
Q ss_pred HHHHh
Q 001414 768 LRAIH 772 (1082)
Q Consensus 768 ~~al~ 772 (1082)
++|+.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99986
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-44 Score=385.36 Aligned_cols=462 Identities=20% Similarity=0.255 Sum_probs=414.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
+......+.++.-.++.|+|.+|.+....+...+|.+...++.++.++++..+++.....-..+++.+|.. ...+.++|
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHH
Confidence 44445688899999999999999999999999999999999999999999999999999999999999998 88899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 001414 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1082)
.++...|++..|+..|+.++++.|+..++|..+|.++...|+ ...|..+|..+++++|....
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~c--------------- 185 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYC--------------- 185 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhh---------------
Confidence 999999999999999999999999999999999999999999 99999999999999987763
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001414 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1082)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1082)
+...+|..+...|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..
T Consensus 186 ----------------------a~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 186 ----------------------ARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred ----------------------hhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHH
Confidence 344566667777888888888888887 6788888899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHH
Q 001414 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEV 444 (1082)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~ 444 (1082)
|+++++++|+.+++|++||.+|...+.++.|+..|.+++.+.|++. .+
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A--------------------------------~a 288 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA--------------------------------VA 288 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch--------------------------------hh
Confidence 9999999999999999999999999999999999999998888765 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHH
Q 001414 445 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524 (1082)
Q Consensus 445 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 524 (1082)
+-++|.+|+.+|..+.|+..|++++. ..|..+.++.+
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F~~Ay~N 325 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNFPDAYNN 325 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCchHHHhH
Confidence 56677888888999999999999888 67888899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchH
Q 001414 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 525 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 604 (1082)
+|.++...|+..+|..+|.+++..+|+++++.++||.++...|.+++|..+|.+++..+|....++.++|.+|..+|+++
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 001414 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 684 (1082)
Q Consensus 605 ~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~ 684 (1082)
+|+.+|+.++.+.|. -..++..+|+. |-.+ |+...|++.|.+++..+|....+..+||.+|...|+
T Consensus 406 ~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 999999999998887 77788889999 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 001414 685 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 724 (1082)
Q Consensus 685 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~ 724 (1082)
+.+|+..|+.++.+.| +.|+++.|+++++.-..++
T Consensus 472 i~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 472 IPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred cHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 9999999999999998 8899999999988765544
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-43 Score=375.46 Aligned_cols=453 Identities=20% Similarity=0.261 Sum_probs=431.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
.|+|.+|.++++.+...||.+...+..++.++++..+++.....-..+++.+|...+++-.+|.++...|+++.|+.+|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 35666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1082)
.++.+.|+. .+.|+++|.|+...|+...|..+|..+++++|....+...+|.++...|. ..+|..+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 88999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHH
Q 001414 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1082)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1082)
...+|..||-++..+|+...|+..|++++.. +|....+|+++|.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 9999999999999999999999999999955 588889999999999999999999999999998 7789999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001414 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1082)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~ 425 (1082)
++|.+|+.+|.++-||.+|++++...|+.+.++.++|.++...|+..+|..+|.+++.+.|+++++..+||.++ +.|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhh
Q 001414 426 GAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 504 (1082)
Q Consensus 426 ~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1082)
+.|..+|.. ..-.+......+++|.+|.++|++++|+.+|++++.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---------------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---------------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----------------------------------
Confidence 999999998 556677788999999999999999999999999998
Q ss_pred hccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Q 001414 505 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584 (1082)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p 584 (1082)
+.|..+.++.++|..|..+|+...|++.|.+++..+|.+++++.+||.+|...|+..+|+..|+.++++.|
T Consensus 417 ---------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 417 ---------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred ---------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhhhhhcccchHHHHHHHHH
Q 001414 585 KYPNALSMLGDLELKNDDWVKAKETFRA 612 (1082)
Q Consensus 585 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 612 (1082)
+.++++.++..++.-..+|..--+.+.+
T Consensus 488 DfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 488 DFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred CCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999887766665443333333
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=378.59 Aligned_cols=675 Identities=11% Similarity=-0.007 Sum_probs=526.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1082)
+...+..|..+...|++++|+..|+.++..+| +...++..|+.+|+.+|+.. +|+..+++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP---------~n~~~~~~LA~~yl~~g~~~-----------~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVP---------DNIPLTLYLAEAYRHFGHDD-----------RARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHH-----------HHHHHHHH
Confidence 34678888889999999999999999987754 33567899999999999888 99999999
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHh
Q 001414 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 120 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~ 191 (1082)
+++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+....++. .+.+..
T Consensus 104 Av~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 104 QLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 999999998888877666 999999999999999999999999999998 666655556665 333333
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHhHHHHHHHHHHHHHhCCCCHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1082)
+|.. ..+.+.++.+|..+|+++.|+..+.++++..|.+...+..|+.+|... ++ +.++.++...+ ..++.+
T Consensus 178 ~~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~l---k~d~~l 249 (987)
T PRK09782 178 SPEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGI---FTDPQS 249 (987)
T ss_pred CCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhc---ccCHHH
Confidence 3333 556777799999999999999999999999999999999999988873 43 66666655422 278899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
+..++..|...|+.+.|...+...-......|......+.+++..... ..|...|.+= ..++...+...+..
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~ 321 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHH
Confidence 999999999999999999999987766666666666677776654432 2233333331 22445556777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al 429 (1082)
.+...+++..+..+ +...|.++. ...........+.+.++...+....+..|.+...+..++.+. ..|+..+|.
T Consensus 322 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 322 VLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 99999999955533 445666664 222222333558888899999988888899999999999988 999999999
Q ss_pred HHHHhhcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--chhhhhcccccchhhhhhhhhHHhhhhhh
Q 001414 430 DAFKTKAG----EEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGD--GIWLTLLDSKTKTYVIDASASMLQFKDMQ 500 (1082)
Q Consensus 430 ~~l~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1082)
..|..... ...+..+...++.+|...+. ...+..+...+-.. +.|..... ....
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------~~~~ 459 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP-----------------GIAD 459 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh-----------------hhhh
Confidence 99998322 22245566688999888877 33333332111000 00000000 0000
Q ss_pred hhhhhccCCCCcCCCCc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001414 501 LFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 578 (1082)
Q Consensus 501 ~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 578 (1082)
.+..+ ...+...|. .+.+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++|+..|++
T Consensus 460 ~~~~~---~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 460 NCPAI---VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hHHHH---HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00000 011224566 88999999999998 899999999999999999864 466778888899999999999999
Q ss_pred HHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHH
Q 001414 579 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 658 (1082)
Q Consensus 579 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 658 (1082)
++...|. ...+..+|.++...|++.+|..+|++++...|. ....+..++.. .... |++++|+..|
T Consensus 535 a~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~-l~~~------------Gr~~eAl~~~ 599 (987)
T PRK09782 535 ISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ-RYIP------------GQPELALNDL 599 (987)
T ss_pred HhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH-HHhC------------CCHHHHHHHH
Confidence 8777555 456788999999999999999999999998766 33344344433 3444 8999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 659 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 659 ~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
.+++..+|+ +.++.++|.++...|++++|+..|++++...| +++.++.++|.++...|++++|+..|+++++.
T Consensus 600 ~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l- 672 (987)
T PRK09782 600 TRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG- 672 (987)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999996 88999999999999999999999999999998 78999999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHH
Q 001414 739 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 818 (1082)
Q Consensus 739 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~ 818 (1082)
.|.++.+++++|.++...|++++|+..|++++.+.|++..+.+-++.+.+ +...++.|++
T Consensus 673 -~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~-------------------~~~~~~~a~~ 732 (987)
T PRK09782 673 -LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ-------------------QRFNFRRLHE 732 (987)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH-------------------HHHHHHHHHH
Confidence 68889999999999999999999999999999999999999887777544 3345677777
Q ss_pred HHHHHhh
Q 001414 819 VFSHLSA 825 (1082)
Q Consensus 819 ~f~~l~~ 825 (1082)
.+.+...
T Consensus 733 ~~~r~~~ 739 (987)
T PRK09782 733 EVGRRWT 739 (987)
T ss_pred HHHHHhh
Confidence 6666654
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=357.51 Aligned_cols=614 Identities=12% Similarity=0.016 Sum_probs=474.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1082)
|++.+|+..|+++++++|+++.+++.++.+|+..|++++|+..++++++.+|.|...+..++.+ +++.+|+..|++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHH
Confidence 4455999999999999999999999999999999999999999999999999999988888766 999999999999
Q ss_pred HHHhCCCChHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Q 001414 188 ALQVHPSCPGAIRLGIGLC--------RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1082)
Q Consensus 188 al~~~p~~~~~~~~~lg~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1082)
++..+|++ ..+++.++.. |.+.+....++. .+.+..+|........++.+|...++ ++.|+..+.+
T Consensus 134 l~~~~P~n-~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d---w~~Ai~lL~~ 207 (987)
T PRK09782 134 LLAQQKAC-DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ---WSQADTLYNE 207 (987)
T ss_pred HHHhCCCC-hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC---HHHHHHHHHH
Confidence 99999999 7888888887 666655555555 44444444455566667999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 001414 260 AFEIYPYCAMALNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1082)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1082)
+.+..|.+...+..|+.+|.. .++ +.+..++...+ ..++.++..++..|...|+.++|...+...-......
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999999999999998888 466 66776654322 2567889999999999999999999998865544444
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
|....-++.++...... ..|...|.+ ...++.......+...+...+.+.-+.++ +...|.++.....++.
T Consensus 281 ~~~~~~~~~l~r~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 281 AQEKSWLYLLSKYSANP---VQALANYTV--QFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEMLEERYAV 351 (987)
T ss_pred CccHHHHHHHHhccCch---hhhccchhh--hhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchHHHHHHhh
Confidence 55555555555544332 334444444 44455566777778999999999955543 4567777753333322
Q ss_pred HHhcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhh
Q 001414 419 LLISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 497 (1082)
Q Consensus 419 ~~~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1082)
....+.+.++...+.. ....+.....+..++......|++.+|..+|+.++..... ... ... +..+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~-------l~~~ 418 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-----ARL-SQT-------LMAR 418 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-----ccc-CHH-------HHHH
Confidence 2255777777777776 4455889999999999999999999999999999873110 000 000 0000
Q ss_pred hhhhhhhhccCCCCcCCCCchHHHHHHHHH------HHHhcCChH---HHHHHHHHHHHhCCC--hHHHHHHHHHHHHHh
Q 001414 498 DMQLFHRFENDGNHVELPWNKVTVLFNLAR------LLEQIHDTV---AASVLYRLILFKYQD--YVDAYLRLAAIAKAR 566 (1082)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~------~~~~~g~~~---~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~ 566 (1082)
-..++..- ..+..+.-...++. -..-.|+.. .+...+..++...|. ++.+|+.+|.++..
T Consensus 419 l~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 419 LASLLESH--------PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred HHHHHHhC--------CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 00000000 00000111111100 011124443 344555666667777 89999999999987
Q ss_pred cCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchH
Q 001414 567 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 646 (1082)
Q Consensus 567 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~ 646 (1082)
+++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...+. ...++.+|.+ +...
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~a-ll~~---------- 555 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS--NEDLLAAANT-AQAA---------- 555 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHH-HHHC----------
Confidence 899999999999999999865 3556677778999999999999998776444 3446677887 7777
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 647 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 726 (1082)
Q Consensus 647 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 726 (1082)
|++..|..+|.+++..+|.+...+..++..+...|++++|+..|++++...| + +.+++++|.++.++|++++
T Consensus 556 --Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~-~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 556 --GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S-ANAYVARATIYRQRHNVPA 627 (987)
T ss_pred --CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C-HHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999888777777777788999999999999999998 5 7899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 001414 727 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 793 (1082)
Q Consensus 727 Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~ 793 (1082)
|+..|++++.. .|.++.++..+|.++...|++++|+..|.+++.++|+++.+++|+|.++...+.
T Consensus 628 A~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 628 AVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998 688899999999999999999999999999999999999999999999887774
No 11
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-30 Score=329.41 Aligned_cols=667 Identities=14% Similarity=0.068 Sum_probs=546.7
Q ss_pred hcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHH
Q 001414 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1082)
Q Consensus 35 ~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~ 114 (1082)
..+.+...+..+...|++.|++.+|..+++.+......+ ....+..+...+...+... .|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~-----------~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAVE-----------EGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCHH-----------HHH
Confidence 345567778889999999999999999999986542211 1123444555555555544 888
Q ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Q 001414 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH- 192 (1082)
Q Consensus 115 ~~~~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~- 192 (1082)
.++..+++..+. +......+...|.+.|+++.|...|+.+. +.+...|..+...|.+.|++++|+.+|.++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999988877653 33455666777889999999999999874 3467789999999999999999999999998654
Q ss_pred -CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 001414 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1082)
Q Consensus 193 -p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1082)
|+. .++..+...+...+++..+...+..++.... .+...+..|...|.+.|+ +..|...|..+. ..+..+
T Consensus 184 ~Pd~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s 255 (857)
T PLN03077 184 RPDV--YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCIS 255 (857)
T ss_pred CCCh--hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcch
Confidence 554 4566667777888999999999998887643 356678888899999999 999999998764 346688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
|+.+...|...|++.+|..+|..+.... ...+..++..+...+...|+.+.|.+++..+++. .......++..+..
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~ 331 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQ 331 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHH
Confidence 9999999999999999999999998653 2345577888889999999999999999999874 23345678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHH
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGA 427 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~--p~~~~~~~~la~~~-~~~~~~~ 427 (1082)
.|.+.|++++|...|+.+.. .+..+|..+...|.+.|++++|+.+|.++.... |+.......+ ..+ ..|+++.
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll-~a~~~~g~~~~ 407 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL-SACACLGDLDV 407 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-HHHhccchHHH
Confidence 99999999999999998743 467789999999999999999999999987653 6654444444 455 9999999
Q ss_pred HHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhh
Q 001414 428 ALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 505 (1082)
Q Consensus 428 Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 505 (1082)
|..++.. ..+...+..+++.+...|.+.|++++|...|+++..
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------------------------------- 452 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------------------------------- 452 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------------------------------
Confidence 9999988 455667778999999999999999999999987533
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-C
Q 001414 506 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-G 584 (1082)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-p 584 (1082)
.+..+|..+...|...|++.+|+.+|.+++...+.+..++..+...+...|..+.+..++..+++.. .
T Consensus 453 -----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 453 -----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred -----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 2456788889999999999999999999987666667888888889999999999999999998865 3
Q ss_pred CChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 585 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
.+..+...+...|.+.|++++|...|..+ ..+..+|..|... |... |+.++|+.+|+++...
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMVES 583 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHHHc
Confidence 34557778899999999999999999876 3478889999888 8888 9999999999999876
Q ss_pred cCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 001414 665 HTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 743 (1082)
Q Consensus 665 ~p~-~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~ 743 (1082)
... |..+++.+...+.+.|.+++|..+|..+.+..+ .. -+...|..+..+|.+.|++++|.++++.+ +..++
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g--i~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd 656 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS--IT-PNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPD 656 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC--CC-CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC
Confidence 533 666777888889999999999999999996542 11 24678999999999999999999999886 34678
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHL 823 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l 823 (1082)
+.+|..|..++...|+.+.+....++++++.|+++..+..|+.+|...| .+++|.+++..+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-------------------~~~~a~~vr~~M 717 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG-------------------KWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-------------------ChHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998888876555 478888888888
Q ss_pred hhCCCC
Q 001414 824 SAASNL 829 (1082)
Q Consensus 824 ~~~~~~ 829 (1082)
...+-.
T Consensus 718 ~~~g~~ 723 (857)
T PLN03077 718 RENGLT 723 (857)
T ss_pred HHcCCC
Confidence 765543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.4e-31 Score=324.11 Aligned_cols=420 Identities=16% Similarity=0.109 Sum_probs=210.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+..|++++...|+ +..+..+|.+|+..|++++|+..|.+++..+|++..+++.+|.++...|+|++|+..|..++..
T Consensus 145 ~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 145 KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555553 4455555555555555555555555555555555555555555555555555555555554444
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
.+.........+...+ ...+...+..++...|.+...+..++.++.... ...+...+......+|.....+
T Consensus 224 ~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 224 DGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred CCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc----CCcchhhhhcccccccccccch
Confidence 3333111111010000 122333344444444544444444443321111 1111111222223333332222
Q ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHH
Q 001414 272 NYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1082)
Q Consensus 272 ~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1082)
..++..+. ..+.|++|+..|+.++......|....++..+|.++...|++++|+..|++++. ..|....+++.+
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~l 371 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKR 371 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHH
Confidence 22222211 123444444444444433322333344444444444444444444444444443 334444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~A 428 (1082)
|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|++++.++|++.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------------------ 433 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------------------ 433 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------------------
Confidence 44444444444444444444444444444444444444444444444444444444444433
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccC
Q 001414 429 LDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 508 (1082)
Q Consensus 429 l~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1082)
..+.++|.++...|++++|+..|++++.
T Consensus 434 --------------~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------- 461 (615)
T TIGR00990 434 --------------FSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------- 461 (615)
T ss_pred --------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------
Confidence 3445556666666777777777776665
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHH------HHHHHHH-HHHhcCHHHHHHHHHHHHH
Q 001414 509 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAAI-AKARNNLQLSIELVNEALK 581 (1082)
Q Consensus 509 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a------~~~la~~-~~~~g~~~eA~~~~~~al~ 581 (1082)
..|.++.+++.+|.++...|++++|+..|.+++...|..... ++..+.+ +...|++++|+.++++++.
T Consensus 462 -----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 462 -----NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred -----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445566666777777777777777777777777766643221 1122222 2335677777777777777
Q ss_pred HcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 582 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
++|++..++..+|.++...|++++|+..|++++.+...
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 77777667777777777777777777777777665543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.9e-31 Score=322.95 Aligned_cols=434 Identities=17% Similarity=0.177 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1082)
.+..+|..++..|+|.+|+..|.+++...|+ +..+.++|.||..+|++++|+..+.+++.++|++..+++.+|.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555553 23455555555555555555555555555555555555555555555
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1082)
Q Consensus 244 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1082)
.|+ +++|+..|..+...++.+......+...+.. ..+...+..++.. .+....++..++..+. ......
T Consensus 207 lg~---~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~-~~~~~~ 275 (615)
T TIGR00990 207 LGK---YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET---KPENLPSVTFVGNYLQ-SFRPKP 275 (615)
T ss_pred cCC---HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc---CCCCCCCHHHHHHHHH-HccCCc
Confidence 555 5555555555444443332211111111111 1112222222211 2222223333333221 111111
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001414 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQL---KLGDFRSALTNFEKVLEI---YPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
+...+..... ..+.....+..++..+. ..+.|++|+.+|++++.. .|....++..+|.++...|++++|+.
T Consensus 276 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 276 RPAGLEDSNE---LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred chhhhhcccc---cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222221 22333334444444332 346788888888888875 36677788888899888999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh
Q 001414 398 LLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 477 (1082)
Q Consensus 398 ~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 477 (1082)
.|++++.++|.+..+ +..+|.++...|++++|+..|++++.
T Consensus 353 ~~~kal~l~P~~~~~--------------------------------~~~la~~~~~~g~~~eA~~~~~~al~------- 393 (615)
T TIGR00990 353 DLSKSIELDPRVTQS--------------------------------YIKRASMNLELGDPDKAEEDFDKALK------- 393 (615)
T ss_pred HHHHHHHcCCCcHHH--------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHH-------
Confidence 999998888876544 44456667778888888888888877
Q ss_pred cccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHH
Q 001414 478 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 557 (1082)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 557 (1082)
..|.++.+++.+|.++...|++++|+..|++++..+|++..+++
T Consensus 394 ------------------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 394 ------------------------------------LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred ------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 56777888889999999999999999999999999999989999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHH-----HHHHhHhHH
Q 001414 558 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGNWN 632 (1082)
Q Consensus 558 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~-----~~~~Lg~~~ 632 (1082)
.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.+.|..... .++..+...
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887653221 122222221
Q ss_pred HHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001414 633 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 633 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p 700 (1082)
|... |++++|+.+|++++.++|++..++..+|.++...|++++|+.+|+++++..+
T Consensus 518 ~~~~------------~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 518 FQWK------------QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHh------------hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 2223 8899999999999999999888888999999999999999999999988775
No 14
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-29 Score=312.54 Aligned_cols=640 Identities=14% Similarity=0.054 Sum_probs=529.9
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhh
Q 001414 26 ASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQ 103 (1082)
Q Consensus 26 ~~~l~~~l~~e--~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~ 103 (1082)
+..+...+... +.+...|..+..++..++.+..+..++..++...+. ..+.+.+.|...|.+.|+..
T Consensus 70 A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~n~li~~~~~~g~~~--- 138 (857)
T PLN03077 70 ALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS--------LGVRLGNAMLSMFVRFGELV--- 138 (857)
T ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC--------CCchHHHHHHHHHHhCCChH---
Confidence 33344434332 345567888888899999999999999987654322 12346778888899999887
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Q 001414 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDSL 182 (1082)
Q Consensus 104 ~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~Al 182 (1082)
.|...|.++. +.+..+|..+...|.+.|++++|+.+|.++.... ..+...+..+...+...+++..+.
T Consensus 139 --------~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 139 --------HAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred --------HHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 8999999875 3477899999999999999999999999998643 234555666666777889999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH
Q 001414 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1082)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1082)
.++..+++........++..+..+|.+.|+++.|...|.++.. .+...|..+...|...|+ +.+|+..|.++..
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~~ 281 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHHH
Confidence 9999988876444356788899999999999999999998753 356779999999999999 9999999999987
Q ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC
Q 001414 263 IY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1082)
Q Consensus 263 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1082)
.. ..+..++..+...+...|+.+.+.+++..+.... ...+..++..+...|.+.|++++|..+|..+.. ..
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d 353 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------KD 353 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------CC
Confidence 63 3356778888889999999999999999988754 344578899999999999999999999998742 24
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGE 418 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p-~~~~~~~~la~ 418 (1082)
...|..+...|.+.|++++|+..|..+.... |+ ..++..+...+...|+++.|..++..+.+... .+..++..|..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 5679999999999999999999999987654 44 45666667789999999999999999988753 45677888888
Q ss_pred HH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhh
Q 001414 419 LL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 497 (1082)
Q Consensus 419 ~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1082)
.| ..|++++|..+|..... .+...|+.+...|...|++.+|+.+|.+++..
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-------------------------- 484 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-------------------------- 484 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--------------------------
Confidence 88 99999999999998543 34568899999999999999999999998751
Q ss_pred hhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCHHHHHHHH
Q 001414 498 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELV 576 (1082)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~g~~~eA~~~~ 576 (1082)
..| +..++..+..++...|..+.+..++..+++... .+...+..+..+|.+.|++++|...|
T Consensus 485 ----------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 485 ----------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred ----------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 234 445566667778889999999999999987542 34566778889999999999999999
Q ss_pred HHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHH
Q 001414 577 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 656 (1082)
Q Consensus 577 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 656 (1082)
+.+ +.+..+|..+...|.+.|+.++|+..|+++......+|..++..+... |... |.+++|..
T Consensus 548 ~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~v~ea~~ 610 (857)
T PLN03077 548 NSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------GMVTQGLE 610 (857)
T ss_pred Hhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------ChHHHHHH
Confidence 886 567889999999999999999999999999987766788888877777 7777 99999999
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 657 LYTRVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 734 (1082)
Q Consensus 657 ~~~~~l~~~p--~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 734 (1082)
+|+.+....+ .+...+..+..+|.+.|++++|..+++++. ..| ++.+|..|-..+...|+.+.|....+++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p------d~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP------DPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999985543 366788999999999999999999999873 333 5788999988999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 735 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 735 l~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
++. .|.++..+..|+.+|...|+|++|.++.+.+.+.
T Consensus 684 ~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 684 FEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred Hhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 987 6888999999999999999999999999877654
No 15
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=1.7e-28 Score=276.50 Aligned_cols=653 Identities=16% Similarity=0.119 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001414 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1082)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1082)
-+...|......|+.+ +|+.++..+++++|.++.+|+.+|.+|-++|+.++++..+-.+-.++|++...
T Consensus 141 ~ll~eAN~lfarg~~e-----------eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLE-----------EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHhCCHH-----------HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 3444455555555555 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHH-HHHHH
Q 001414 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEAL-VALAV 239 (1082)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~-~~la~ 239 (1082)
|..++....++|++..|.-+|.++++.+|.+ ....+..+.+|.++|++..|...|.+++..+|.. .... ...+.
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 6778889999999999999999999999999921 1112 22345
Q ss_pred HHHHhccHHhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------
Q 001414 240 MDLQANEAAGIRKGMEKMQRAFEI--YPYCAMALNYLANHFFFTGQHFLVEQLTETALA--------------------- 296 (1082)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------------------- 296 (1082)
.+...++ -+.|++.+..++.. +-.....++.++.++.....++.+.........
T Consensus 289 ~~~~~~~---~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 289 YFITHNE---RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHhhH---HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 5555555 58888888888883 333456778899999999999998887776654
Q ss_pred -ccC---CCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 297 -VTN---HGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 297 -~~~---~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
... ..+.... +...++.+....++..+++..+..--. -...+.+..++.++.++...|++..|+.+|..+...
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 100 0111122 255555555666666666655543321 124556778999999999999999999999999886
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhc----------CCC
Q 001414 372 YPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKA----------GEE 439 (1082)
Q Consensus 372 ~p~-~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~----------~~~ 439 (1082)
.+. +..+|+.+|.||..+|.++.|+.+|.+++...|++.++.+.|+.++ ..|+.++|++.+.... ...
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 554 5679999999999999999999999999999999999999999999 9999999999999822 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc---chhhhhh-----------hhhHHhh---hhhhhh
Q 001414 440 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT---KTYVIDA-----------SASMLQF---KDMQLF 502 (1082)
Q Consensus 440 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~-----------~~~~~~~---~~~~~~ 502 (1082)
....+......+++..|+.++=+.....++........+.... ....... ....... .+...-
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 3456778888999999999886655555544322111110000 0000000 0000000 000000
Q ss_pred hhhccC--CCCcCCCCchH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC----h-H-HHHHHHHHHHHHhcCHH
Q 001414 503 HRFEND--GNHVELPWNKV----TVLFNLARLLEQIHDTVAASVLYRLILFKYQD----Y-V-DAYLRLAAIAKARNNLQ 570 (1082)
Q Consensus 503 ~~l~~~--~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~-~-~a~~~la~~~~~~g~~~ 570 (1082)
..+... ........... .....+..++.+.+.+.+|..+...++...-- . . ...+....+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 000000 00000111112 33445566778888888888888887764321 1 1 22233334566778888
Q ss_pred HHHHHHHHHHHH-----cCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCch
Q 001414 571 LSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 645 (1082)
Q Consensus 571 eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~ 645 (1082)
.|..+++.++.. +|..+..|...-.+....++-.--...+..++...+..++...+.-|.. .+..
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~-~~~~--------- 753 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN-LFVN--------- 753 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh-Hhhc---------
Confidence 898888888887 5555556664444444555444444445555555555445555555665 5666
Q ss_pred HHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC----------CchHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001414 646 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715 (1082)
Q Consensus 646 ~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 715 (1082)
+.+..|+..|.++...+|++|..-..+|.++.+.. ..-+++.++.+..+..... +...+.+|+|
T Consensus 754 ---~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNig 827 (895)
T KOG2076|consen 754 ---ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIG 827 (895)
T ss_pred ---cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHH
Confidence 78888999999999999998888888887776541 3346666666666655311 3567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCC--------CC--HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 001414 716 HVYFAQGNFALAMKMYQNCLRKFYYN--------TD--AQILLYLARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 716 ~~~~~~g~~~~Ai~~~~~al~~~~~~--------~~--~~~~~~La~~~~~~g~~~eA~~~l~~a 770 (1082)
.+|...|-..-|+.+|+++|...+.+ -+ -.+.++|..+|...|+...|.+++.+-
T Consensus 828 Rayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 828 RAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 88888888888888888888763111 11 566778888888888888888877654
No 16
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=6.9e-27 Score=252.39 Aligned_cols=597 Identities=16% Similarity=0.134 Sum_probs=496.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
-++..+|.-++....+.||.+|..|+.-|.+--..|++..|..+..+-.+..|.+...|+.-+ +....+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 467789999999999999999999999999999999999999999998888888888877644 3344444555555
Q ss_pred HHHHhCCCChHHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001414 187 RALQVHPSCPGAIRLGI---------------------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~l---------------------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1082)
.++...|.+ ..+|+.- =.....+.+.+.|+-.+.++++..|.+.+.|..|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 555555555 3333222 223344566777888889999988988888888776
Q ss_pred HHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHH
Q 001414 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 317 (1082)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~ 317 (1082)
+. .|..|...++++-+.-|.++.+|..-+.+--..|+.+.+.+++.+.+..... ...+-+.|+.-|..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 53 2888899999999999999999999999999999999999999888754322 23455778888888888
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001414 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
.|-.-.+.......+...-...+.-..|+.-++.+.+.+.++-|+.+|..+++.+|....+|...+..-...|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 88888777777777764445566677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001414 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 475 (1082)
Q Consensus 398 ~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 475 (1082)
+|++++...|.....|+..+..+ ..|+...|..++.. ....+.+.++|.....+.+....++.|..+|.++...+
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s--- 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--- 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC---
Confidence 99999999999999999999988 88999999999998 55666788899988899999999999999999987632
Q ss_pred hhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHH
Q 001414 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 555 (1082)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 555 (1082)
....+|+.-+.+...+++.++|+.+++.+++.+|.+...
T Consensus 649 -----------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl 687 (913)
T KOG0495|consen 649 -----------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL 687 (913)
T ss_pred -----------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH
Confidence 256788888888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHH
Q 001414 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 635 (1082)
Q Consensus 556 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~ 635 (1082)
|+.+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|....|...|.++.-.+|+ +...|+....+ -+.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~-ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRM-ELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999988888 55555444444 333
Q ss_pred HhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001414 636 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715 (1082)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 715 (1082)
. |+.+.|..+..++|+..|++...|..-..+.-.-++-..+++.+++. . .+|.+++..|
T Consensus 766 ~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphVllaia 824 (913)
T KOG0495|consen 766 A------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHVLLAIA 824 (913)
T ss_pred c------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchhHHHHH
Confidence 3 99999999999999999998887766555555556655555555443 2 5789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHH
Q 001414 716 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 784 (1082)
Q Consensus 716 ~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nl 784 (1082)
..+....++++|.+.|.++++. .|.+..++.++-..+...|.-++-.++|.+.....|.+...|-.+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 9999999999999999999998 466677777777888899999999999999999999887665543
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.98 E-value=7.8e-27 Score=263.13 Aligned_cols=628 Identities=18% Similarity=0.200 Sum_probs=450.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1082)
+.-.+..|+..+-+|++++|..++..++..++ .....+.+||.+|-.+|+.+ +++...-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp---------~~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP---------RNPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---------cchhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 56788999999999999999999999987754 23567999999999999888 89999999
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 001414 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---- 195 (1082)
Q Consensus 120 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---- 195 (1082)
|..++|++...|..++....++|++.+|+-+|.++++.+|.+....+.++.+|.+.|++..|...|.+++...|..
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH-----------
Q 001414 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAFE----------- 262 (1082)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~----------- 262 (1082)
..+.-...+..+...++-+.|+..++.++....+ ..+-+..++.+++.... ++.++........
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 1223345678888888889999999999983322 33446677777777766 7777766655444
Q ss_pred -----------hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001414 263 -----------IY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1082)
Q Consensus 263 -----------~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1082)
.. +.+..+ ..+..++......+....+..............+..++.++.++...|+|..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 10 112222 233334444444333333333333332234566788999999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.+|..++... ...+...|+.+|.||..+|.++.|+.+|++++...|++.++...|+.+|.++|++++|.+.+.....-
T Consensus 435 ~~l~~i~~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 9999998632 23346689999999999999999999999999999999999999999999999999999999887633
Q ss_pred CCCC---------HHHHHHHHHHH-hcCCHHHHHHHHHh------------------------hcCCCC-----------
Q 001414 406 DPRD---------AQAFIDLGELL-ISSDTGAALDAFKT------------------------KAGEEV----------- 440 (1082)
Q Consensus 406 ~p~~---------~~~~~~la~~~-~~~~~~~Al~~l~~------------------------~~~~~~----------- 440 (1082)
++.+ .........++ ..|+.++=+..... ......
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHH
Confidence 3221 12223333344 45554432221111 000000
Q ss_pred ----------------------------C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001414 441 ----------------------------P----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488 (1082)
Q Consensus 441 ----------------------------~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 488 (1082)
. .+++..+..++.+.+.+++|..+...++....
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~--------------- 657 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI--------------- 657 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh---------------
Confidence 1 12233334455566666666666666554211
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchH-HHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CCChHHHHHHHHHH
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLRLAAI 562 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~a~~~la~~ 562 (1082)
++ ..+... ..-+....+-...+++..|..+++.++.. +|.....|+..-.+
T Consensus 658 ------------f~-----------~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 658 ------------FF-----------QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred ------------hh-----------ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 00 112222 33334444556779999999999999987 66556666544444
Q ss_pred HHHhcCHHHHHHHHHHHHHHcCCC-hHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhc
Q 001414 563 AKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641 (1082)
Q Consensus 563 ~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~ 641 (1082)
....++-.--..++..++..+|.+ +......|..++..+.+..|+..|-++....|. ++...+.||-. |...+....
T Consensus 715 ~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lgla-fih~a~qr~ 792 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLA-FIHLALQRR 792 (895)
T ss_pred HHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHH-HHHHHHHHH
Confidence 455555444555666677777777 667778899999999999999999999999888 55555556655 554422111
Q ss_pred cCchHHhhHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchHHHH
Q 001414 642 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWI 712 (1082)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~ 712 (1082)
...+.-..-+++.++.+..++-.. .-.+.+++|.+|-..|-..-|+.+|+++++..|.+... -.-.+-+
T Consensus 793 --v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~ 870 (895)
T KOG2076|consen 793 --VSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY 870 (895)
T ss_pred --HhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh
Confidence 111113355667777666655443 77899999999999999999999999999987532110 1234778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 001414 713 NLAHVYFAQGNFALAMKMYQNCL 735 (1082)
Q Consensus 713 ~la~~~~~~g~~~~Ai~~~~~al 735 (1082)
||..+|...|+...|.+++.+-+
T Consensus 871 NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 871 NLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hhhhhhccCCcHHHHHHHHHhhc
Confidence 99999999999999999887643
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=8e-25 Score=236.53 Aligned_cols=606 Identities=13% Similarity=0.095 Sum_probs=511.9
Q ss_pred HhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHH
Q 001414 34 KAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1082)
Q Consensus 34 ~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A 113 (1082)
...|.++..|+.-|+.--..|++..|..++.++.+.++.+ -.+|+..-++. -.+.|
T Consensus 279 etnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS----------------eDvWLeaiRLh--------p~d~a 334 (913)
T KOG0495|consen 279 ETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS----------------EDVWLEAIRLH--------PPDVA 334 (913)
T ss_pred hcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch----------------HHHHHHHHhcC--------ChHHH
Confidence 4588899999999999999999999999999998876543 22333333332 11257
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
..+.-++++..|.++..|+..+.+-.. ...=...++++++..|+++..|-. .....+.+.|..++.++.+..|
T Consensus 335 K~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAveccp 407 (913)
T KOG0495|consen 335 KTVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECCP 407 (913)
T ss_pred HHHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhcc
Confidence 788889999999999999987776543 344467899999999999877653 3466777789999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh---C--CCCH
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI---Y--PYCA 268 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~---~--p~~~ 268 (1082)
.+ ...|.. |.++.-|+.|...+.++-+.-|.++.+|+.-+.+-...|+ .+....++.+.+.. + .-+.
T Consensus 408 ~s-~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~r 479 (913)
T KOG0495|consen 408 QS-MDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEINR 479 (913)
T ss_pred ch-HHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeecH
Confidence 98 565554 4556779999999999999999999999999999999998 55555555555432 2 2355
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHH
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1082)
..|..-|...-..|..-.+..+....+..+-.....-..|..-+..+...+-++-|+..|..+++ -.|.....|...
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq---vfp~k~slWlra 556 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ---VFPCKKSLWLRA 556 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh---hccchhHHHHHH
Confidence 67777888888888888888888888877666667778899999999999999999999999998 456666778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1082)
+.+--.-|..+.-...|++++...|.....|.+.+..+...|+...|..++..+++.+|++...|+.-..+. ....++.
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 888888999999999999999999999999999999999999999999999999999999999999988888 8999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhcc
Q 001414 428 ALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 507 (1082)
Q Consensus 428 Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 507 (1082)
|..+|.+.........+|...+.+...+++.++|+.+++++++
T Consensus 637 aR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk------------------------------------- 679 (913)
T KOG0495|consen 637 ARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK------------------------------------- 679 (913)
T ss_pred HHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH-------------------------------------
Confidence 9999999777888889999999999999999999999999998
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCh
Q 001414 508 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587 (1082)
Q Consensus 508 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 587 (1082)
..|.....|..+|.++.++++.+.|...|...++..|..+..|+.|+.+-...|++-.|...+.++.-.+|.+.
T Consensus 680 ------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 680 ------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred ------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCC
Q 001414 588 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 667 (1082)
Q Consensus 588 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 667 (1082)
..|.....+-++.|+.+.|...+.++++..|+ ....| ...| ++.. +. ++ ...+..+|+..-.
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LW--aEaI-~le~-~~---------~r----kTks~DALkkce~ 815 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLW--AEAI-WLEP-RP---------QR----KTKSIDALKKCEH 815 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhH--HHHH-Hhcc-Cc---------cc----chHHHHHHHhccC
Confidence 99999999999999999999999999999887 22222 1222 2222 11 11 2234456666778
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001414 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 747 (1082)
Q Consensus 668 ~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~ 747 (1082)
|+.++..+|.++....++++|...|.+++..+| ++.++|..+-..++..|.-++-.+.|.+|... .|.....|
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W 888 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELW 888 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHH
Confidence 899999999999999999999999999999998 78899999999999999999999999999886 55554444
Q ss_pred HH
Q 001414 748 LY 749 (1082)
Q Consensus 748 ~~ 749 (1082)
..
T Consensus 889 ~a 890 (913)
T KOG0495|consen 889 QA 890 (913)
T ss_pred HH
Confidence 43
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.6e-26 Score=284.49 Aligned_cols=442 Identities=13% Similarity=0.057 Sum_probs=313.6
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
+.++.+ -...|-++....-...++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555 4456667777777778888889999999999888888888888889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1082)
.+ +.++..++.++...|++++|+..+++++...|++.. +..+|.++...|+ +.+|+..+++++...|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 88 677888899999999999999999999999999888 8888998888888 889999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHhhCCCCCChh-
Q 001414 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFIF- 343 (1082)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~~~- 343 (1082)
++.++...+..+.|+..+..+...... ..........+.+.... .+++ ++|+..|+.++...+..|....
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 888888888888888888765531000 00001122222333322 2334 7788888888865444443322
Q ss_pred ---hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001414 344 ---PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1082)
Q Consensus 344 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~ 419 (1082)
+.+.....++..|++++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|++++..+|.++.
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~-------- 307 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD-------- 307 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC--------
Confidence 222212344677899999999999888764322 34444688999999999999999998887775421
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhh
Q 001414 420 LISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 499 (1082)
Q Consensus 420 ~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1082)
........++.++...|++++|+..+..+....|..........
T Consensus 308 --------------------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~---------------- 351 (765)
T PRK10049 308 --------------------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT---------------- 351 (765)
T ss_pred --------------------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----------------
Confidence 01122334444556666666666666666655432111111000
Q ss_pred hhhhhhccCCCCcCCCCc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 500 QLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
..|+ ...++..++.++...|++++|+..+++++...|.+..+++.+|.++...|++++|+..++
T Consensus 352 --------------~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 352 --------------SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1222 245666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 578 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
+++.++|+++.+++.+|.++...|++++|...+++++...|.
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777777777777777777777777776665
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.9e-26 Score=274.95 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=197.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1082)
.+.......+..++..|++++|+..+..++...|.++.++..+|.+....|+++.|+..|++++..+|++ +.++..+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Confidence 4455667778889999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001414 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1082)
++...|++++|+..|++++.++|+++.++..++.++...|+ +++|+..+.+++...|.++.++..++ .++..|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHH
Confidence 99999999999999999999999999999999999999999 99999999999999998887665543 355666666
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH----H
Q 001414 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS----A 361 (1082)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A 361 (1082)
+|+..+..++...+ +........++.++...|++++|+..|.+++. ..|....+++.+|.++...|++++ |
T Consensus 195 eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 195 EDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 66666665554321 11112223344555555555555555555554 334445555555555555555543 4
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|++
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 555555555555555555555555555555555555555555555543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=5.6e-26 Score=273.61 Aligned_cols=339 Identities=11% Similarity=0.003 Sum_probs=259.8
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001414 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1082)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1082)
........+..++..|++.+|+..+...+. ..|....+++.+|.++...|+++.|+..|++++..+|+++.++..+|
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 334455666777777888888888877776 56667777777777777888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001414 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESA 461 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 461 (1082)
.++...|++++|+..|++++.++|+++.++..++.++ ..|++++|+..+.+ ....+.++..+..++ .+...|++++|
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHH
Confidence 8888888888888888888888888887777777777 77777777777766 233444555555443 46778888888
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001414 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541 (1082)
Q Consensus 462 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 541 (1082)
+..++.++... .+........++.++...|++++|+..
T Consensus 197 ~~~~~~~l~~~------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 197 HDLARALLPFF------------------------------------------ALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred HHHHHHHHhcC------------------------------------------CCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 88888776621 112223445567777888888888888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcC
Q 001414 542 YRLILFKYQDYVDAYLRLAAIAKARNNLQL----SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 542 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
|.+++..+|+++.++..+|.++...|++++ |+..|++++.++|+++.++..+|.++...|++++|+..+++++...
T Consensus 235 ~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 235 GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888875 7888888888888888888888888888888888888888888877
Q ss_pred CCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 001414 618 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697 (1082)
Q Consensus 618 ~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~ 697 (1082)
|. +..++..+|.+ |... |++++|+..|.+++..+|.+..+...+|.++...|++++|+..|++++.
T Consensus 315 P~-~~~a~~~La~~-l~~~------------G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 315 PD-LPYVRAMYARA-LRQV------------GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 76 66677778877 7777 8888888888888888888777666778888888888888888888888
Q ss_pred HhcCC
Q 001414 698 AASGS 702 (1082)
Q Consensus 698 ~~p~~ 702 (1082)
..|+.
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 87743
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=9e-26 Score=277.96 Aligned_cols=432 Identities=13% Similarity=0.056 Sum_probs=309.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1082)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1082)
.+++. -...|-++........+....|++.+|+.++..+.. ..|..+.++..+|.++...|++.+|+..|++++.
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~---~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~- 77 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRV---HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS- 77 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 34444 445666777777777788888888888888877764 2355567788888888888888889888888887
Q ss_pred hCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
..|....++..++.++...|++++|+..+++++...|+++. +..+|.++...|++++|+..|++++...|+++.++.
T Consensus 78 --~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 78 --LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 56777778888888888899999999999999888888888 888898988899999999999999999888888777
Q ss_pred HHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001414 415 DLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 493 (1082)
Q Consensus 415 ~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1082)
.++.++ ..+..+.|+..+.+....+.. ...+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~-----------------~~~l~~----------------------------- 188 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAE-----------------KRDLEA----------------------------- 188 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHH-----------------HHHHHH-----------------------------
Confidence 777666 556666666666542221110 000000
Q ss_pred HhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCChH-------HHHHHHHHHH
Q 001414 494 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT---VAASVLYRLILFKYQDYV-------DAYLRLAAIA 563 (1082)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~-------~a~~~la~~~ 563 (1082)
.+....+...++......+++ +.|+..|+.++...|.++ .+++....++
T Consensus 189 ---------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 189 ---------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred ---------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 000000000011111111223 566777777765433221 1222212233
Q ss_pred HHhcCHHHHHHHHHHHHHHcCCChH-HHHHhhhhhhcccchHHHHHHHHHhhhcCCCC---cHHHHHHhHhHHHHHHhhh
Q 001414 564 KARNNLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDGK---DSYATLSLGNWNYFAALRN 639 (1082)
Q Consensus 564 ~~~g~~~eA~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---d~~~~~~Lg~~~y~~~~~~ 639 (1082)
...|++++|+..|++++...|..|. +...+|.+|...|++++|+..|++++...|.. .......|+.+ +...
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a-~~~~--- 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS-LLES--- 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH-HHhc---
Confidence 5667777777777777776543332 33445777777777777777777777655432 12233344444 4455
Q ss_pred hccCchHHhhHHHHHHHHHHHHHhhcC-------------CC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 001414 640 EKRAPKLEATHLEKAKELYTRVIVQHT-------------SN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 704 (1082)
Q Consensus 640 ~~~~~~~~~~~~~~A~~~~~~~l~~~p-------------~~--~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 704 (1082)
+++++|+..+.++....| ++ ..+...+|.++...|++++|+..|++++...|
T Consensus 324 ---------g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P---- 390 (765)
T PRK10049 324 ---------ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP---- 390 (765)
T ss_pred ---------ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 777888888877777765 32 34667889999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchh
Q 001414 705 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 705 ~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 781 (1082)
.++.+++.+|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++++|...+++++...|+++.+.
T Consensus 391 -~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 391 -GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 77999999999999999999999999999998 588899999999999999999999999999999999998543
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-25 Score=233.31 Aligned_cols=422 Identities=14% Similarity=0.130 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1082)
..+-..|.-++..|+|++||.+|..++. ..|+.+.-|.+++-||...|+|++.++...++++++|+...+++..+.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 4566788899999999999999999998 5566566788999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHH-----------
Q 001414 386 YVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKT--KAGEEVPIEVLNNIGVI----------- 451 (1082)
Q Consensus 386 ~~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la~~~~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~----------- 451 (1082)
+..+|++.+|+....-.--.. -.+......+-+++...-...+-+-+.. ....|....+-...+.+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999999987665332221 1222222222223311111122222221 00011111111111111
Q ss_pred -------------HHHc---CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCC
Q 001414 452 -------------HFEK---GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 515 (1082)
Q Consensus 452 -------------~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (1082)
+... ..|..|...+.+.... .+..+......-+.
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~-----------------------------~~~~~~~n~~d~~l- 322 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG-----------------------------SESSLSVNEIDAEL- 322 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh-----------------------------hhhhccccccchhH-
Confidence 0111 1344444444333221 01111100000001
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 595 (1082)
...+.++...|..+.-.|++-.|...+..+|.++|.+...|+.++.+|...++..+-...|.++..++|.++++|+..|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 12366777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 596 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 596 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
+++-++++++|+.-|++++.+.|. ..++++.++-+ .+.. +.+..+...|+.+.+..|+.+..++..
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a-~Yr~------------~k~~~~m~~Fee~kkkFP~~~Evy~~f 468 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCA-LYRQ------------HKIAESMKTFEEAKKKFPNCPEVYNLF 468 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 999999999999999999999998 89999999988 6777 899999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYF-AQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 753 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~la~~~~-~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~ 753 (1082)
|.++..+++|+.|++.|.+++++.|... ..-++..+++-|.+.+ -.+++..|++++.++++. +|..-.++..||.+
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQF 546 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHH
Confidence 9999999999999999999999998410 0014555555554443 358999999999999998 68888899999999
Q ss_pred HHHhccHHHHHHHHHHHHhhCCC
Q 001414 754 HYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 754 ~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
..++|+.++|+++|+++..+.-.
T Consensus 547 ~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999877643
No 24
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.1e-22 Score=251.04 Aligned_cols=518 Identities=13% Similarity=0.049 Sum_probs=337.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1082)
..+.+.|++.+|+.+|+.+...+.-. ....+..+..++...|....|...|..+.. | +...|..+...+...|+
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~-- 452 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQD-- 452 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcC--
Confidence 34445566666666665555443211 112222334444555556666655554432 3 34445555555555555
Q ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001414 249 GIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
++.|..+|..+.+.. +.+..++..+...|...|+++.|..+|..+.... ...+..+|..+...|.+.|++++|+.+
T Consensus 453 -~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 453 -IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 556666666555543 2345556666666666666666666666665432 122345666666666666666666666
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
|..+... ....+...|..+...|.+.|++++|...|..+... .| +..++..+..+|.+.|++++|..+|+.+.
T Consensus 530 f~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 530 YGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666542 11223445666666666666666666666666542 22 34556666666666666666666666666
Q ss_pred HhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001414 404 KID-PRDAQAFIDLGELL-ISSDTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479 (1082)
Q Consensus 404 ~~~-p~~~~~~~~la~~~-~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 479 (1082)
+.. +.+...|..+...| ..|++++|+.+|.. ..+..++...++.+...+.+.|++++|..+|..+...+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------- 679 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG------- 679 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------
Confidence 554 33455566666655 66666666666666 23344556788888999999999999999999988743
Q ss_pred cccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCChHHHHH
Q 001414 480 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYL 557 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~a~~ 557 (1082)
. +.+..++..+...|.+.|++++|..+|..+... .| +..+|.
T Consensus 680 ----------------------------------~-~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN 723 (1060)
T PLN03218 680 ----------------------------------I-KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMN 723 (1060)
T ss_pred ----------------------------------C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 2 235678899999999999999999999998763 34 478899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHH
Q 001414 558 RLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 636 (1082)
Q Consensus 558 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~ 636 (1082)
.+...|++.|++++|+.+|..+.... ..+..+|..+...+.+.|+++.|..+|..+++....++...+..|..+ + .
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl-c--~ 800 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-C--L 800 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--H
Confidence 99999999999999999999987653 234667777888999999999999999999998777777777666433 2 1
Q ss_pred hhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001414 637 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 716 (1082)
Q Consensus 637 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~ 716 (1082)
+.+.+|......++..++.++. ...+....|+.+|+++++..- .| +..++..+-.
T Consensus 801 ------------~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~~Al~lf~eM~~~Gi---~P-d~~T~~~vL~ 855 (1060)
T PLN03218 801 ------------RRFEKACALGEPVVSFDSGRPQ---------IENKWTSWALMVYRETISAGT---LP-TMEVLSQVLG 855 (1060)
T ss_pred ------------HHHHHHhhhhhhhhhhhccccc---------cccchHHHHHHHHHHHHHCCC---CC-CHHHHHHHHH
Confidence 4467777766665554433222 222345679999999998761 12 3556666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhh
Q 001414 717 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKKSLLRAIHL 773 (1082)
Q Consensus 717 ~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~~ 773 (1082)
|++..+....+..+++.+... +..++..++..|-..+ |+ ..+|...|..+...
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred HhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHc
Confidence 888888888887777664432 3555666777776665 33 36899999999886
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-24 Score=228.55 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 001414 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK 455 (1082)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~ 455 (1082)
..++...|..++-.|+.-.|...|.+++.++|.+... |..++.+|...
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l--------------------------------yI~~a~~y~d~ 373 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL--------------------------------YIKRAAAYADE 373 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH--------------------------------HHHHHHHHhhh
Confidence 4566667777777777777777777777777765533 33345556666
Q ss_pred CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh
Q 001414 456 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535 (1082)
Q Consensus 456 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 535 (1082)
.+..+-...|.++.. ++|.++.+|+..|.++.-++++
T Consensus 374 ~~~~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hccHHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHHH
Confidence 666777777777766 6677778888888888888888
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001414 536 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615 (1082)
Q Consensus 536 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 615 (1082)
++|+.-|++++.++|+++-++..++++..+++.+.++...|+.+....|+.++++...+.++..+++++.|.+.|..++.
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred cCCCC-----cHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Q 001414 616 ATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 690 (1082)
Q Consensus 616 ~~~~~-----d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~ 690 (1082)
+.|.. .+..++.-+-+ .++- ++++..|+.++.++++++|.+-.++.+||.+..++|++++|++
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l-~~qw-----------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALL-VLQW-----------KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred hccccccccccchhhhhhhHh-hhch-----------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 76651 12223222322 1111 1889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001414 691 LFTQVQEAA 699 (1082)
Q Consensus 691 ~~~~~~~~~ 699 (1082)
+|++.....
T Consensus 559 lFEksa~lA 567 (606)
T KOG0547|consen 559 LFEKSAQLA 567 (606)
T ss_pred HHHHHHHHH
Confidence 999988766
No 26
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=4.3e-22 Score=245.93 Aligned_cols=549 Identities=10% Similarity=0.016 Sum_probs=414.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHhHHHHHHH
Q 001414 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEK 256 (1082)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1082)
..++.+++..+...++. ..+..+-..+.+.|++..|+..|+.+...+.- +...+..+...+...|. ...|+.+
T Consensus 354 ~~~~~~~~~~~~~~~~~--~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~---~~eAl~l 428 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKS--PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA---VKEAFRF 428 (1060)
T ss_pred hhhHHHhccccCCCCCc--hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 34455555555544444 34555566677899999999999999876532 33334445566667777 8899988
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 001414 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1082)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1082)
+..... .+..++..+...+...|+++.|..++..+.... ...+..+|..+...|.+.|+++.|..+|..+...
T Consensus 429 f~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-- 501 (1060)
T PLN03218 429 AKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-- 501 (1060)
T ss_pred HHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--
Confidence 876654 467889999999999999999999999988653 2345678999999999999999999999999863
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH
Q 001414 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----DPRDAQ 411 (1082)
Q Consensus 337 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~----~p~~~~ 411 (1082)
....+...|..+...|.+.|++++|+..|..+.... ..+..+|..+...|.+.|++++|..+|..+... .| +..
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 223457789999999999999999999999997653 235788999999999999999999999999763 44 456
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001414 412 AFIDLGELL-ISSDTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488 (1082)
Q Consensus 412 ~~~~la~~~-~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 488 (1082)
+|..+...| ..|++++|..+|.. ..+...+...|+.+...|.+.|++++|+.+|.++...+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---------------- 644 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---------------- 644 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------
Confidence 777777777 99999999999998 44556677889999999999999999999999987743
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhc
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARN 567 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g 567 (1082)
..| +..++..+...+...|++++|..++..+.+.. +.+..+|..+...|.+.|
T Consensus 645 -------------------------v~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 645 -------------------------VKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred -------------------------CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 334 45678888899999999999999999998764 345788999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchH
Q 001414 568 NLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 646 (1082)
Q Consensus 568 ~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~ 646 (1082)
++++|..+|+.+.... ..+...|..+...|.+.|++++|..+|..+....-.++..++..+... |...
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a-~~k~---------- 767 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERK---------- 767 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHC----------
Confidence 9999999999987642 234678999999999999999999999999887766788888888877 8777
Q ss_pred HhhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 647 EATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 725 (1082)
Q Consensus 647 ~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 725 (1082)
|+++.|..+|..+++.... +...++.+..++. +.+++|..+...++...+ +......+...
T Consensus 768 --G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~--------------g~~~~~n~w~~ 829 (1060)
T PLN03218 768 --DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS--------------GRPQIENKWTS 829 (1060)
T ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc--------------cccccccchHH
Confidence 9999999999999887643 5556655533322 345666655554443332 22222233456
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHHHHHhhhhccCCCHH
Q 001414 726 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT-LRFDAGVAMQKFSASTLQKTRRTAD 804 (1082)
Q Consensus 726 ~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~nla~~~~~~~~~~l~~~~~~~~ 804 (1082)
.|+.+|+++++. +..++..++..+-.++...+....+...+... ...|..+. ..|| .++ ...+
T Consensus 830 ~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m-~~~~~~~~~~~y~-~Li-~g~~------------ 893 (1060)
T PLN03218 830 WALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENL-GISADSQKQSNLS-TLV-DGFG------------ 893 (1060)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHh-ccCCCCcchhhhH-HHH-Hhhc------------
Confidence 799999999987 46677777777767888888888777766543 33443322 2222 121 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 001414 805 EVRSTVAELENAVRVFSHLSAASNLHLHG 833 (1082)
Q Consensus 805 ~~~~a~~~l~~A~~~f~~l~~~~~~~~~~ 833 (1082)
...++|..+|.++...|-.|.+.
T Consensus 894 ------~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 894 ------EYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ------cChHHHHHHHHHHHHcCCCCCcc
Confidence 01367999999999888766554
No 27
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.95 E-value=9.2e-23 Score=230.51 Aligned_cols=350 Identities=19% Similarity=0.173 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1082)
...|+..|-++++++|+.+.+|..+|..|...-+...|..+|+++..++|.+..++-..+..|....+++.|..+.-.+-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34556666666666666666666666666655566666666666666666665555555555555555555555544433
Q ss_pred HhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 190 QVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 190 ~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
+..|.. ....|..+|..|...+++..|+..|+.++..+|.+..+|..+|.+|...|. +..|++.|.++..++|.+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHhH
Confidence 333322 112233355555555555555555555555555555555555555555555 5555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHHHcCCHHHHH-------------------
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAG------------------- 325 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~------------------- 325 (1082)
.+.+..+.+....|.|.++...+...+..... ....++++..++..++..|-+.+|.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 55555555555555555544444443321100 0011112222222222222222111
Q ss_pred ----------------------------------------------------HHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 001414 326 ----------------------------------------------------LYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1082)
Q Consensus 326 ----------------------------------------------------~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1082)
.++-..++ -......|+++|..|+
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls----l~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS----LAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH----HhhccchHHHHhHHHH
Confidence 11111111 1222455677776665
Q ss_pred H--------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001414 354 K--------LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (1082)
Q Consensus 354 ~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~ 424 (1082)
. ..+-..|+.++.++++...++...|..||.+ ...|++.-|..+|-+.+...|.....|.+++.++ ...+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 5 1233467777777777777777777777766 5556777777777777777777777777777766 6667
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 425 TGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 467 (1082)
Q Consensus 425 ~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 467 (1082)
++.|-..+.+ ....|.+...|...+.+....|+.-++...|.-
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7777777766 444555556666666666666766666666655
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-23 Score=225.33 Aligned_cols=505 Identities=14% Similarity=0.118 Sum_probs=348.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Q 001414 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1082)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1082)
+-.-+..+.+|.-|+-+-.++..+. .+ +.-.+.+|.|++-.|++..|......- .+...+..+.+..+.++....+
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~-~d-p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~- 97 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT-ND-PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE- 97 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc-CC-hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH-
Confidence 3334556677777777777776665 44 333566777777777777777666654 3445566666666666666665
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001414 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
++.|+.++.+. .. -.++..+. +..+ +......+.. ..
T Consensus 98 --~~~al~vl~~~-~~-~~~~f~yy-----------------------------~~~~------~~~l~~n~~~----~~ 134 (611)
T KOG1173|consen 98 --WDQALLVLGRG-HV-ETNPFSYY-----------------------------EKDA------ANTLELNSAG----ED 134 (611)
T ss_pred --HHHHHHHhccc-ch-hhcchhhc-----------------------------chhh------hceeccCccc----cc
Confidence 66666655533 00 00110000 0000 0000000000 00
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHh
Q 001414 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA--AKI 405 (1082)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ka--l~~ 405 (1082)
. ........++..|.+|....+.++|...|..++..++.+.+++..+.....-..+ +-...+... -..
T Consensus 135 ~--------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~--Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 135 L--------MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQ--EEFELLESLDLAML 204 (611)
T ss_pred c--------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchh--HHHHHHhcccHHhh
Confidence 0 0111223455567777777777777777777777777777666655444332210 001111100 000
Q ss_pred CCCCHHHHHHHHHHHhcC-CHHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001414 406 DPRDAQAFIDLGELLISS-DTGAALDAF--KTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 482 (1082)
Q Consensus 406 ~p~~~~~~~~la~~~~~~-~~~~Al~~l--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 482 (1082)
...+......+-.+.... .-..++... ....+...++.++...+..++..++|.+...++...+.
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle------------ 272 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE------------ 272 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh------------
Confidence 001111111111100000 000000000 11233445677888889999999999999999999888
Q ss_pred chhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 001414 483 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL-FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 561 (1082)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~ 561 (1082)
..|....++ ..+| ++...|+..+-..+-.+++..+|+.+-.|+.+|.
T Consensus 273 -------------------------------~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 273 -------------------------------KDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred -------------------------------hCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344444444 4455 8888899888888888899999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CcHHHHHHhHhHHHHHHhhhh
Q 001414 562 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNE 640 (1082)
Q Consensus 562 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~d~~~~~~Lg~~~y~~~~~~~ 640 (1082)
.|...|++.+|..+|.++..++|....+|..+|..+.-.|..++|+..|..+.++.+. +-+..+ +|.- |..+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgme-y~~t---- 393 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGME-YMRT---- 393 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHH-HHHh----
Confidence 9999999999999999999999999999999999999999999999999999998766 344444 5544 8878
Q ss_pred ccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHHH
Q 001414 641 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV--FVQMPDVWINLAHVY 718 (1082)
Q Consensus 641 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~la~~~ 718 (1082)
++++.|..+|.+++.+.|.++..++.+|.+....+.|.+|..+|+.++...+... .+.....+.||||+|
T Consensus 394 --------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 394 --------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred --------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999995553211 113556799999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH
Q 001414 719 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790 (1082)
Q Consensus 719 ~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~ 790 (1082)
.+++.+.+||..|+++|.. .|.++.++..+|.+|...|+++.|+..|.+++-+.|++..+.--|+.+++.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999998 788999999999999999999999999999999999998777666665443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.7e-22 Score=241.02 Aligned_cols=456 Identities=10% Similarity=-0.008 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+.|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|++|+.+|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555555555555555555554333344555555555555555555555222223333333344555555555555555
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1082)
++++..+|++ +.++..++.++...++.++|+..++++...+|.+... ..++.++...++ ..+|+..+++++..+|
T Consensus 126 ~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P 200 (822)
T PRK14574 126 QSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCC
Confidence 5555555555 4444555555555555555555555555555543332 222333322222 3335555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhH
Q 001414 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1082)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1082)
.+..++..+...+...|-...|.++...--..... ......-...+.-..+.+ .. .+.....
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a------------~~----~~~~~~~- 262 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMA------------VL----PTRSETE- 262 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhc------------cc----ccccchh-
Confidence 55555555555555555555555444332111000 000000011111111111 00 0000000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-------ETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLG 417 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la 417 (1082)
+.--.+.|+..++.++...|..+ .+..-.-.++...|++.+++..|+.+.... |-...+...++
T Consensus 263 --------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 263 --------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred --------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00012344555555554322211 122233444455556666666665554332 22333444455
Q ss_pred HHH-hcCCHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh-hhcccccchhhhh
Q 001414 418 ELL-ISSDTGAALDAFKTKAG-------EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL-TLLDSKTKTYVID 488 (1082)
Q Consensus 418 ~~~-~~~~~~~Al~~l~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~ 488 (1082)
..| ..+.+.+|+.+|..... .+........|...|...+++++|..++++.....|+. .....
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-------- 406 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-------- 406 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC--------
Confidence 555 55666666666665211 12223334667788999999999999999998755531 10110
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 568 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 568 (1082)
.....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.
T Consensus 407 ---------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 407 ---------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred ---------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 11115677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCc
Q 001414 569 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 621 (1082)
Q Consensus 569 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d 621 (1082)
+..|...++.++.++|.+..+...++.++..+++|.+|......++...|.+-
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999999999999999999999999999999998833
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.9e-23 Score=216.19 Aligned_cols=474 Identities=18% Similarity=0.187 Sum_probs=246.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~ 202 (1082)
.+++.++..|-....+.+|+..|+-+++ ..|+....-+.+|.+++++.+|.+|+++|+.++..-|... ..+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 4677788888888889999999988875 3577767778889999999999999999999998888752 345567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--PYCAMALNYLANHFFF 280 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 280 (1082)
+|..+.+.|.|+.|+..|..+++..|+.. +-+.|..+++..|+ .++..+.|.+++.+. |++.. |..
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddk--------yi~ 349 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDK--------YIK 349 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCccc--------ccC
Confidence 88889999999999999999999988544 44566677788888 666666777776542 11100 000
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1082)
..+- ---.++..++.. ..+ -.....+-..|..+...+.+.+. |.. ..-+..|.
T Consensus 350 ~~dd-p~~~ll~eai~n--------d~l-----k~~ek~~ka~aek~i~ta~kiia--pvi-~~~fa~g~---------- 402 (840)
T KOG2003|consen 350 EKDD-PDDNLLNEAIKN--------DHL-----KNMEKENKADAEKAIITAAKIIA--PVI-APDFAAGC---------- 402 (840)
T ss_pred CcCC-cchHHHHHHHhh--------HHH-----HHHHHhhhhhHHHHHHHHHHHhc--ccc-ccchhccc----------
Confidence 0000 000000000000 000 00011111222222222222110 110 00011110
Q ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH-h--cCCHHHHHHHHH
Q 001414 361 ALTNFEKVLEI---YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAFIDLGELL-I--SSDTGAALDAFK 433 (1082)
Q Consensus 361 A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~-~~~~~la~~~-~--~~~~~~Al~~l~ 433 (1082)
.++-..++. .|--.+.-...+.-|.+.|+++.|+++++-.-..+.... .+-.+|..++ . -.++..|..+..
T Consensus 403 --dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 403 --DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred --HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 011111110 011112223344445555555555555543333222111 1111111111 1 111222222222
Q ss_pred h-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCc
Q 001414 434 T-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 512 (1082)
Q Consensus 434 ~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (1082)
. ......++.++.+.|.+.+..|++++|...|++++.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------------------------------ 518 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------------------------------------------ 518 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------------------------------
Confidence 1 111222334444555555566666666666666665
Q ss_pred CCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHH
Q 001414 513 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 513 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
.+.....+++++|..+..+|+.++|+.+|-++..+--+++.+++.++.+|....+..+|++++-++..+-|++|.++..
T Consensus 519 -ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 519 -NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred -CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 3334555666666666666666666666666555555566666666666666666666666666666666666666666
Q ss_pred hhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHH
Q 001414 593 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 672 (1082)
Q Consensus 593 lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~ 672 (1082)
+|.+|-+.|+-.+|..++-......|. +....-.||.. |... .-.++|+.+|+++--+.|+...+.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~-nie~iewl~ay-yidt------------qf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPC-NIETIEWLAAY-YIDT------------QFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCc-chHHHHHHHHH-HHhh------------HHHHHHHHHHHHHHhcCccHHHHH
Confidence 666666666666666555544444444 33333334443 4444 444455555555544445444444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p 700 (1082)
..++.|+.+.|+|.+|.++|+......|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 4444444455555555555554444444
No 31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=2e-22 Score=247.98 Aligned_cols=429 Identities=13% Similarity=0.014 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1082)
.++..+..++...++++.|..++..+.... ..| ...++..+..+|.+.|+++.|...|+.+.. .+..+|..+...
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSG-FEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHH
Confidence 334444444444444444444444444321 111 233344444444444555555444444422 133444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-hcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001414 386 YVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL-ISSDTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESA 461 (1082)
Q Consensus 386 ~~~~g~~~~A~~~l~kal~~~p~-~~~~~~~la~~~-~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A 461 (1082)
|.+.|++++|+.+|.++....+. +..++..+...+ ..+....+..++.. ..+...+..+++.+...|.+.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 44555555555555444433211 122233333333 44444444444333 223334456677777788888888888
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001414 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541 (1082)
Q Consensus 462 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 541 (1082)
..+|+.+.. .+..+|..+...|...|++++|..+
T Consensus 279 ~~vf~~m~~----------------------------------------------~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 279 RCVFDGMPE----------------------------------------------KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHHHHhCCC----------------------------------------------CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 888775422 2556777788888888888888888
Q ss_pred HHHHHHhC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 542 YRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 542 ~~~~l~~~-p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
|.++.... .-+..++..+...+...|.+++|...+..+++.. +.+..++..+...|.+.|++++|...|+++..
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 88876532 2235677777888888888888888888887765 55666778888888888888888888887643
Q ss_pred CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001414 620 KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 698 (1082)
Q Consensus 620 ~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~ 698 (1082)
++..+|..|... |... |+.++|+++|+++...... |..+++.+...+.+.|.+++|..+|+.+.+.
T Consensus 389 ~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 389 KNLISWNALIAG-YGNH------------GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred CCeeeHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 356677777777 7777 8888888888888765533 6667777888888888888888888888765
Q ss_pred hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Q 001414 699 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 699 ~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 778 (1082)
.+- . .+...|..+..+|.+.|++++|.++++++ +..++..+|..|..++...|+.+.|..++++++.+.|++.
T Consensus 456 ~g~--~-p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 456 HRI--K-PRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred cCC--C-CCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 321 0 13557788888888888888888877653 3466777888888888888888888888888888888877
Q ss_pred chhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 001414 779 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASN 828 (1082)
Q Consensus 779 ~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~ 828 (1082)
..+..|+.+|...| .+++|.++|..+...+-
T Consensus 529 ~~y~~L~~~y~~~G-------------------~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 529 NNYVVLLNLYNSSG-------------------RQAEAAKVVETLKRKGL 559 (697)
T ss_pred cchHHHHHHHHhCC-------------------CHHHHHHHHHHHHHcCC
Confidence 76666666555444 47888888888876653
No 32
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=1.1e-22 Score=250.25 Aligned_cols=463 Identities=12% Similarity=0.002 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLA 275 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 275 (1082)
.+..+...+...|++.+|+..|..+....| -+...+..+...+...++ +..+...+..+.... ..+..+++.+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~---~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS---IRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 455666677777888888888877765432 244556666666666666 666666666655432 22456666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc
Q 001414 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1082)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1082)
..|...|+++.|..+|+.+.. .+..+|..+...|...|++++|+.+|.++.... ......++..+...+...
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHhcC
Confidence 666666666666666665531 234556666666666666666666666665431 122233455555556666
Q ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001414 356 GDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1082)
Q Consensus 356 g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~ 434 (1082)
|....+...+..+++.. ..+..++..+...|.+.|++++|..+|+.+.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------------------------- 286 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------------------------------- 286 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------
Confidence 66666666655555432 2244555666666666666666666665442
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCC
Q 001414 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (1082)
..+...|+.+...|.+.|++++|+.+|.++...+ .
T Consensus 287 ----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-----------------------------------------~ 321 (697)
T PLN03081 287 ----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-----------------------------------------V 321 (697)
T ss_pred ----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------------------------------------C
Confidence 1234567888888999999999999999887632 2
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
.| +..++..+..++...|.++.|..++..+++.. +.+..++..+..+|.+.|++++|..+|+++.. .+..+|..+
T Consensus 322 ~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~l 397 (697)
T PLN03081 322 SI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNAL 397 (697)
T ss_pred CC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence 33 45678888899999999999999999998865 55678889999999999999999999998754 356789999
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC--CCHHH
Q 001414 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYA 671 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a 671 (1082)
...|.+.|+.++|+..|+++......++..++..+... +... |..++|..+|+.+.+..+ .+...
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYS------------GLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HhcC------------CcHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999988777788888888887 7777 999999999999987543 35567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 751 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La 751 (1082)
++.+..+|.+.|++++|.++++++. ..| +..+|..|...+...|+++.|...+++++.. .|.+...|..|+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~-~~p------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~ 535 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAP-FKP------TVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLL 535 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHH
Confidence 8889999999999999999987642 122 5678999999999999999999999999876 566778889999
Q ss_pred HHHHHhccHHHHHHHHHHHHhhC
Q 001414 752 RTHYEAEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 752 ~~~~~~g~~~eA~~~l~~al~~~ 774 (1082)
.+|...|++++|.++++.+....
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999887653
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=4.3e-22 Score=239.30 Aligned_cols=424 Identities=11% Similarity=-0.023 Sum_probs=292.1
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1082)
Q Consensus 89 la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1082)
++.++...|+.. +|+.++++++...|.....+..+|.++...|++++|+.+|++++..+|+++.++..+
T Consensus 74 ll~l~~~~G~~~-----------~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 74 WLQIAGWAGRDQ-----------EVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHHcCCcH-----------HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 345555555555 999999999933344444444558899999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1082)
+.++...+++++|+..+.+++..+|.. .. +..++.++...++..+|+..|++++..+|++..++..+..++...|-
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~~dp~~-~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~-- 218 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAERDPTV-QN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI-- 218 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhcccCcch-HH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999986 33 36667777667888779999999999999999999999999988887
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcC---------C---HHHHHHHHHHHHhccCCCCCc----hHHHHH
Q 001414 249 GIRKGMEKMQRAFEIYPYCAMALN--YLANHFFFTG---------Q---HFLVEQLTETALAVTNHGPTK----SHSYYN 310 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g---------~---~~~A~~~~~~~l~~~~~~~~~----~~~~~~ 310 (1082)
...|.+...+--.........+. ..+....+.+ . .+.|+.-++.++......|.. -.+...
T Consensus 219 -~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 219 -VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred -cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 66777655542222211111111 1111122111 1 122333333333322222221 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHH
Q 001414 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGH 384 (1082)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~ 384 (1082)
.-.++...|++.+++..|+.+......-| ..+....|..|+..+++++|+.+|..++...| ........|..
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 44455555666666666665543211112 22344455666666666666666666655331 12222345555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001414 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464 (1082)
Q Consensus 385 ~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 464 (1082)
.|...+++++|..++.++....|-.... .+.. .....+.-......++.++...|++.+|...
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~---~~~~--------------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGV---YGLP--------------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEec---cCCC--------------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5556666666666666665543310000 0000 0012223345667788899999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001414 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 544 (1082)
Q Consensus 465 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 544 (1082)
+++.+. ..|.++.+...+|.++...|.+..|...++.
T Consensus 439 le~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 439 LEDLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999987 6789999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHH
Q 001414 545 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 590 (1082)
Q Consensus 545 ~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 590 (1082)
+...+|.+..+...++.++...+++.+|......++..+|+++.+.
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999998655
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.5e-23 Score=213.42 Aligned_cols=458 Identities=19% Similarity=0.159 Sum_probs=324.5
Q ss_pred HHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHH
Q 001414 109 HFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDS 181 (1082)
Q Consensus 109 ~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A 181 (1082)
.+.+|+..|+-.++. -|+....-+.+|.++++..+|.+|+.+|+.++..-|.- +..+..+|..+.+.|.|+.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 344888888876643 36666677889999999999999999999999988853 56678888899999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C---------CCH-HHHHHHH--HHHHHh---
Q 001414 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--P---------ENV-EALVALA--VMDLQA--- 244 (1082)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p---------~~~-~a~~~la--~~~~~~--- 244 (1082)
+..|..++...|+. ..-+++..|++..|+-++-.+.|.+++.+- | +++ ..++.-+ .-.+..
T Consensus 296 insfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999997 345788999999999999999999998752 1 111 1122111 111111
Q ss_pred ccHHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 245 NEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1082)
Q Consensus 245 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1082)
.+....++++..--+.+. +.|+....+ .++-..+......+...+.-...+-.+.+.|+++
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~-----------------dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGC-----------------DWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhccc-----------------HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 111112333332222221 122222111 1111111111112222234445566677778888
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1082)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1082)
.|++.+.-.-+. .+.....+-.+|..+++.+ .++..|..+-..++.++.-++.++.+.|.+-+..|++++|...|+
T Consensus 437 ~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 437 GAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 777776554431 1122223344555555553 367777777777777777777777777777777788888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001414 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 478 (1082)
Q Consensus 401 kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 478 (1082)
.++..+.....++++++..+ ..|+.++|+.+|-+ ......+.++++.++.+|..+.+..+|++++.++..
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s-------- 586 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS-------- 586 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--------
Confidence 88777777777777777777 77788888877777 223345678888888888888888888888888766
Q ss_pred ccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHH
Q 001414 479 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 558 (1082)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~ 558 (1082)
+-|.++.++..+|.+|-+.|+...|.+++-....-.|.+.+..-+
T Consensus 587 -----------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 587 -----------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred -----------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 567788888889999988898888888888888888888888888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~ 631 (1082)
|+..|....-+++|+.+|+++.-+.|+...+...++.|+.+.|+|..|...|+.+-...|. +...+-.|..+
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri 703 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRI 703 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 8888888888888999999988888888888888888888889999999999888888877 55555444443
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-22 Score=216.24 Aligned_cols=467 Identities=15% Similarity=0.144 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
+.+|.-|+-+-+++..+. .+|...+.+|.+++..|++..|......- .....+..+.+..+.+++...+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888899999999999999998877654 5666778999999999999999999999988
Q ss_pred HH------HHhCCCC------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001414 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1082)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1082)
.. +..+|.+ ...+.+..|.+|..+.+.++|...|..++..++.+.+++..+-...+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33 1111111 12345667888888999999999999999999999998887776655
Q ss_pred HhccHHhHHHHHHHHHHH-HH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhccCCCCCchHHHHHHHHHHHHcC
Q 001414 243 QANEAAGIRKGMEKMQRA-FE-IYPYCAMALNYLANHFFFTGQHFLVEQLTE-TALAVTNHGPTKSHSYYNLARSYHSKG 319 (1082)
Q Consensus 243 ~~~~~~~~~~A~~~~~~a-l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~~~~~~~~~~~~~la~~~~~~g 319 (1082)
.... +-...+... +. ....+...+..+-.+......-........ ..+ .....+.......+..++..+
T Consensus 187 lt~~-----Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl---~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 187 LTAQ-----EEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL---IGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred cchh-----HHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh---hhhhhcHHHHHHHHHHHHHcC
Confidence 5421 111111110 00 000011100000000000000000000000 000 001123344555555666666
Q ss_pred CHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001414 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1082)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1082)
+|.+....+...+. ..|.+..++..-..++..+|+..+-...-.+++..+|+.+..|+.+|..|...|++.+|..+|
T Consensus 259 ~f~~c~kit~~lle---~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 259 RFKECLKITEELLE---KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred hHHHHHHHhHHHHh---hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 66666666666655 223333322222225556666665555555666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001414 400 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479 (1082)
Q Consensus 400 ~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 479 (1082)
.|+..++|....+|+.+|. .+...|..++|+..|..|.+
T Consensus 336 SKat~lD~~fgpaWl~fgh--------------------------------sfa~e~EhdQAmaaY~tAar--------- 374 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGH--------------------------------SFAGEGEHDQAMAAYFTAAR--------- 374 (611)
T ss_pred HHHhhcCccccHHHHHHhH--------------------------------HhhhcchHHHHHHHHHHHHH---------
Confidence 6666666665555544433 33333444444444444433
Q ss_pred cccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHH
Q 001414 480 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 559 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~l 559 (1082)
.-|......+.+|.-|...+++..|..+|.+++.+.|.++-.+..+
T Consensus 375 ----------------------------------l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 375 ----------------------------------LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred ----------------------------------hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 1122223333444444444555555555555555555555555555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHc-------CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHH
Q 001414 560 AAIAKARNNLQLSIELVNEALKVN-------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 632 (1082)
Q Consensus 560 a~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~ 632 (1082)
|.+....+.+.+|..+|+.++..- +.....+.++|.++.+.+.+.+|+..|++++.+.|. +..++.++|-+
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~i- 498 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYI- 498 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHH-
Confidence 555555555555555555444211 111223444455555555555555555555444444 44444444444
Q ss_pred HHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 633 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 633 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
|... |+++.|+..|.++|-+.|+|..+-..|
T Consensus 499 y~ll------------gnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 499 YHLL------------GNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHh------------cChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4444 445555555555555555544443333
No 36
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.92 E-value=8.8e-21 Score=214.70 Aligned_cols=645 Identities=15% Similarity=0.062 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SDSLEF 184 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~Al~~ 184 (1082)
.+.+..|..+|+.++..+|.+ ....|.+......|..|...+..+.... .|...+..+..++.+.+.- +-|.-.
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~ 456 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLL 456 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHH
Confidence 356667777888887777765 6667777777888888888887776666 5555566666665542211 111111
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC
Q 001414 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1082)
+.. ...+..++ -+...+...|...|-+++.++|....++..||.+|....+ ...|..+|.++++++
T Consensus 457 ~~e---------~~~~w~a~--~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLD 522 (1238)
T KOG1127|consen 457 ECE---------NSEFWVAL--GCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELD 522 (1238)
T ss_pred HHH---------HHHHHHHH--HHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC
Confidence 111 01111111 1233458889999999999999999999999999998877 889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhh
Q 001414 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1082)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1082)
+.+..+....+..|....+++.|..+....-+.... ......|..+|-.|...+++..|+..|+.+++ .+|....+
T Consensus 523 atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~ 598 (1238)
T KOG1127|consen 523 ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNL 598 (1238)
T ss_pred chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHH
Confidence 999999999999999999999988874443322110 11223455577777777777777777777776 66777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~ 424 (1082)
|.++|.+|...|.+..|++.|.++..++|.+..+.+..+.+.+..|.+.+|+..+...+........+...++
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa------- 671 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA------- 671 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH-------
Confidence 7777777777787777777777777777777777777777777777777777777777665444433444433
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhh
Q 001414 425 TGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 504 (1082)
Q Consensus 425 ~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1082)
+.+...+..+...|-...|..++++++......-.- . ..-+...+.+-...--.|.+
T Consensus 672 ------------------E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h-~----~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 672 ------------------ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH-S----LQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred ------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-h----hhhhHHHHHHHhHHHHHHHH
Confidence 344444555555566666666666665532100000 0 00001111111111112222
Q ss_pred hccCCCCcCCCCchHHHHHHHHH--HHHhcCCh---H---HHHHHHHHHHHhCCChHHHHHHHHHHHHH--------hcC
Q 001414 505 FENDGNHVELPWNKVTVLFNLAR--LLEQIHDT---V---AASVLYRLILFKYQDYVDAYLRLAAIAKA--------RNN 568 (1082)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~---~---~A~~~~~~~l~~~p~~~~a~~~la~~~~~--------~g~ 568 (1082)
+. |+.+..++..+. -+...+.. + -+.+.+-..++.-.. +..|++||..|.. ..+
T Consensus 729 ~e---------~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 729 EE---------PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred hc---------ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchh
Confidence 21 222222221111 11122211 1 233333333332222 5567777766554 123
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHh
Q 001414 569 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 648 (1082)
Q Consensus 569 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~ 648 (1082)
...|+.++++++++..++...|..+|.+ ...|++.-|..+|-+.+...|. ....|+++|.+ ++..
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL-~l~n------------ 863 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVL-VLEN------------ 863 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheecccee-EEec------------
Confidence 4579999999999999999999999998 6678999999999999988887 77788899988 8877
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 728 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai 728 (1082)
.+++.|...|.++..++|.|...+.+.+.+....|+.-++..+|....+......-......|++--.....+|+++.-|
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 89999999999999999999999999999999999999999999986655533221223445566666777788777766
Q ss_pred HHHHHH------HHhh--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------CCCcchhhHHHHHHHHHHHh
Q 001414 729 KMYQNC------LRKF--YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVAMQKFSAS 794 (1082)
Q Consensus 729 ~~~~~a------l~~~--~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~nla~~~~~~~~~ 794 (1082)
..-.++ ++.| ..|+..-++...|......+.+..|...+.+++.+- ..++.+.-++|.++.-.+..
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 654443 3333 246668889999999999999999998887776541 12333444455544333331
Q ss_pred h-----hhcc-CCCHHHHHH------HHHHHHHHHHHHHHHhhCCC
Q 001414 795 T-----LQKT-RRTADEVRS------TVAELENAVRVFSHLSAASN 828 (1082)
Q Consensus 795 ~-----l~~~-~~~~~~~~~------a~~~l~~A~~~f~~l~~~~~ 828 (1082)
. +... ....+++.. -...++.+.+.|++..+..+
T Consensus 1024 e~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1024 ESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred hhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 1 0000 111112221 14567888888888766554
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-21 Score=204.81 Aligned_cols=332 Identities=15% Similarity=0.111 Sum_probs=282.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh-hcCCC--CCHHHHHHHHH
Q 001414 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT-KAGEE--VPIEVLNNIGV 450 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~-~~~~~--~~~~~~~~la~ 450 (1082)
.++..++..|.++.+.|....|+..|..++...|-+..+|..|+.+... +..+.. ..+.+ .....-+.++.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999887611 111111 11111 23333445666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001414 451 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 530 (1082)
Q Consensus 451 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 530 (1082)
++......++++.-+...+.. ..|....+-...|.+..
T Consensus 236 a~~el~q~~e~~~k~e~l~~~------------------------------------------gf~~~~~i~~~~A~~~y 273 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSV------------------------------------------GFPNSMYIKTQIAAASY 273 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------------------------------------------cCCccHHHHHHHHHHHh
Confidence 777777888888877776663 24566777778899999
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHH
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 610 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 610 (1082)
...+++.|+..|+.+.+.+|-..+-.-.+..++.-.++-.+-.-+.+.+..++.--+++...+|+.|.-.++.++|+.+|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 99999999999999999999766666666666666666666666777888889888999999999999999999999999
Q ss_pred HHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Q 001414 611 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 690 (1082)
Q Consensus 611 ~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~ 690 (1082)
+++++++|. ...+|..+|.- |..+ ++...|++.|+.++.++|.+..+|++||.+|.-++..-=|+-
T Consensus 354 kRALkLNp~-~~~aWTLmGHE-yvEm------------KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 354 KRALKLNPK-YLSAWTLMGHE-YVEM------------KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHHhcCcc-hhHHHHHhhHH-HHHh------------cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 999999998 78889999999 9999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 001414 691 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 691 ~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 770 (1082)
+|+++....| .++.+|..||.||.+.++.++|++.|.+++.. ...+..++..||..|...++..+|..+|.+-
T Consensus 420 YfqkA~~~kP-----nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 420 YFQKALELKP-----NDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHhcCC-----CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999998 88999999999999999999999999999986 4556899999999999999999999999999
Q ss_pred HhhC
Q 001414 771 IHLA 774 (1082)
Q Consensus 771 l~~~ 774 (1082)
++..
T Consensus 493 v~~~ 496 (559)
T KOG1155|consen 493 VEVS 496 (559)
T ss_pred HHHH
Confidence 9854
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-20 Score=196.43 Aligned_cols=439 Identities=17% Similarity=0.174 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhh------hhhhhHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET------KQREKEEHFILATQ 115 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~------~~~~k~~~~~~A~~ 115 (1082)
.-+.+|..|+....++.|.-.|+...+. ...| +...+.+...-.+.+. ....+.......+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~--k~~F----------L~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~ 147 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSK--KSAF----------LRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELI 147 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchH--HHHH----------HHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHH
Confidence 5678999999999999999999986442 1111 1111111111000000 00011112223344
Q ss_pred HHHHHHhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 116 YYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 116 ~~~~al~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.+++-++. ...++..++..|.++-..|....|+..|..++...|-+-.+|+.++.+... +.........
T Consensus 148 ~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~ 220 (559)
T KOG1155|consen 148 ELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVG 220 (559)
T ss_pred HHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhc
Confidence 44443332 234567888899999999999999999999999999999999988876432 3333333333
Q ss_pred CCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHH
Q 001414 192 HPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 192 ~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
-|.+ ..-.-+.++.++..+...++++.-+++.+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|....
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcch
Confidence 4432 2334456788888888999999999988888 78888888888888888888 99999999999999998888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
-.-.+.++++-..+-.+..-+...+... +.-.++++-.+|..|...++.++|+.+|+++++ .+|....+|..+|
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmG 371 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMG 371 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhh
Confidence 7888888887777766555555555433 455567788888888888899999999999988 7788888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al 429 (1082)
.-|..+.+...|+..|.++++++|.+..+|+.||..|.-++.+.=|+-+|++++...|+++..|..|
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL------------- 438 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL------------- 438 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH-------------
Confidence 9999999999999999999999999999999999999999998889999999998888877655554
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCC
Q 001414 430 DAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 509 (1082)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 509 (1082)
|.+|.+.++.++|+.+|..++..
T Consensus 439 -------------------G~CY~kl~~~~eAiKCykrai~~-------------------------------------- 461 (559)
T KOG1155|consen 439 -------------------GECYEKLNRLEEAIKCYKRAILL-------------------------------------- 461 (559)
T ss_pred -------------------HHHHHHhccHHHHHHHHHHHHhc--------------------------------------
Confidence 55666667777777777776652
Q ss_pred CCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF-------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 510 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
......+++.+|.+|..+++..+|..+|.+.++ ..|....+...|+..+.+.+++++|..+...++.-
T Consensus 462 -----~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 -----GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred -----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 222446677777777777777777777777666 34555666666777777777777777666665554
Q ss_pred c
Q 001414 583 N 583 (1082)
Q Consensus 583 ~ 583 (1082)
+
T Consensus 537 ~ 537 (559)
T KOG1155|consen 537 E 537 (559)
T ss_pred C
Confidence 3
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-22 Score=222.75 Aligned_cols=312 Identities=21% Similarity=0.244 Sum_probs=281.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
..+.++..+|..|..+..+ +..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~y---------~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQY---------NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566677777777766544 3569999999976777777888889999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
.+...-....++....+--+---+.+..+..+|+. +..|..+|.||..+++++.|+.+|+++++++|....++..+|.-
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77666666667777766555555667788889999 78899999999999999999999999999999999999999998
Q ss_pred HHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCC
Q 001414 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1082)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1082)
+....+ ++.|+.+|++++..+|.+..+|+.||.+|.++++++.|+-.|.+++. .+|.+......+|.++.+.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhh
Confidence 888888 99999999999999999999999999999999999999999999994 468888999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1082)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1082)
.++|+.+|++|+. .+|.++...+..|.+++..+++++|+..++.+-..-|+...+++.+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 9999999999998 7788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHH
Q 001414 401 KAAKIDPRDAQ 411 (1082)
Q Consensus 401 kal~~~p~~~~ 411 (1082)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 99999997654
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-21 Score=208.47 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~ 423 (1082)
....+|...+...++..|+.+|..++.++ .+...+.+.+.+|+..|.+...+....++++..-....-+..++
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa------ 298 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA------ 298 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH------
Confidence 45678999999999999999999999999 88888999999999999999999988887766543332223332
Q ss_pred CHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhh
Q 001414 424 DTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 503 (1082)
Q Consensus 424 ~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1082)
..+..+|..+...++++.|+.+|.+++....
T Consensus 299 -------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~R------------------------------ 329 (539)
T KOG0548|consen 299 -------------------KALARLGNAYTKREDYEGAIKYYQKALTEHR------------------------------ 329 (539)
T ss_pred -------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc------------------------------
Confidence 2333477788888999999999999876210
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 504 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
. ..++......+++........-.+|.-...-..-|..++..|+|..|+..|.+++..+
T Consensus 330 -----------t----------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 330 -----------T----------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred -----------C----------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 0 3344455566677777776666777766666666888888888888888888888888
Q ss_pred CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHh
Q 001414 584 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 663 (1082)
Q Consensus 584 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 663 (1082)
|+++.+|.+.+.||.++|.+..|+...+.++++.|. ..-.++.-|.+ ++.+ ++|++|++.|.++++
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale 454 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALE 454 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888776 67777777777 7777 888888888888888
Q ss_pred hcCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 001414 664 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 694 (1082)
Q Consensus 664 ~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~ 694 (1082)
.+|++..+..++..++..+.......++.++
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8888888887777777654444444445544
No 41
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=9.4e-19 Score=191.21 Aligned_cols=449 Identities=15% Similarity=0.149 Sum_probs=315.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
...++..+.-++..++|...+...+.+++..|.++..+..+|..+...|+-++|..+...++..++.+ ...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHH
Confidence 34566777777778888888888888888888888888888888888888888888888888888877 67788888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001414 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1082)
-...+|++|+.+|..|+.+.|+|...|.-++.+..+.++ +.-....-.+.+++.|.....|..++..++..|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888887 77777777788888888888888888888888888888
Q ss_pred HHHHHHHHhccCCCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 001414 288 EQLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1082)
Q Consensus 288 ~~~~~~~l~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1082)
..+++...+.....+. ...+...........|.+++|++.+..--.. .-+........+.+++..+++++|+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 8888777765542222 2344555667777888888888777654431 1222333455788899999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCC
Q 001414 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEV 440 (1082)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~ 440 (1082)
..|...+..+|++...+..+-.++.+..+.-+++ ..|...-+..|.. .....++... ....+...+.-+-...-...
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999999999999888888877776333444444 5555544444433 2222222222 22333333333333111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCC-------CcC
Q 001414 441 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN-------HVE 513 (1082)
Q Consensus 441 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~ 513 (1082)
.+.+..++-.+|-... .. .++++.+. ++...+...+. ..+
T Consensus 319 ~p~vf~dl~SLyk~p~---k~-~~le~Lvt-----------------------------~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPE---KV-AFLEKLVT-----------------------------SYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred CCchhhhhHHHHhchh---Hh-HHHHHHHH-----------------------------HHHhhcccccCCCcccccccC
Confidence 2222333333322211 11 12222221 11111111110 012
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
.+....+.++.++.-+...|+++.|..++..++...|..++.|+..|.++...|++++|..++..+.+++-.+..+-...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 33345667788999999999999999999999999999999999999999999999999999999999997776666678
Q ss_pred hhhhhcccchHHHHHHHHHhhhcC
Q 001414 594 GDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
+...++.++.++|.++..+.....
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcc
Confidence 888899999999999888766544
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=8.2e-21 Score=190.89 Aligned_cols=345 Identities=18% Similarity=0.177 Sum_probs=276.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001414 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1082)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1082)
.+|.++.-++.+|..++..|++..|+..|..++..+|++..+++.+|.+|+..|+-.-|+.-+.+++.+.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3566778889999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
.|.+++++|.++.|...|..+|..+|.+... ...++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 9999999999999999999999999965432 2222211100
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHH
Q 001414 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1082)
..+......++..|++..|+.+....+. ..|..+..+...+.||+..|++.
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1112223345566888888888888887 66777888888999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEE 439 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~ 439 (1082)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-..-.+- ...+.+.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk---Kv~K~le--------- 274 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK---KVVKSLE--------- 274 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH---HHHHHHH---------
Confidence 9999999999998899999999999999999999999999999999998765443322211 1111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchH
Q 001414 440 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 519 (1082)
Q Consensus 440 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 519 (1082)
-+......++|.+++...++.+...|. ..+...
T Consensus 275 --------s~e~~ie~~~~t~cle~ge~vlk~ep~---------------------------------------~~~ir~ 307 (504)
T KOG0624|consen 275 --------SAEQAIEEKHWTECLEAGEKVLKNEPE---------------------------------------ETMIRY 307 (504)
T ss_pred --------HHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------ccceee
Confidence 122344667888888888888774321 112223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHH
Q 001414 520 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 520 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
...-.+..|+..-+++.+|+..+.+++...|+++.++...+..|+....|+.|+..|+++...++++..+.-.
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3444567788889999999999999999999999999999999999999999999999999999998776544
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.9e-22 Score=217.39 Aligned_cols=289 Identities=17% Similarity=0.200 Sum_probs=190.9
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhh
Q 001414 425 TGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 503 (1082)
Q Consensus 425 ~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1082)
..+|+..|.+ .........++..+|..|+.+++|++|..+|+.+-...|
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p------------------------------ 384 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP------------------------------ 384 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------
Confidence 3444444444 112233446777888888888888888888888876433
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 504 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
....-.-.+..+++.+.+.-+--.+.+..+..+|+.+.+|..+|.+|..+++++.|+++|+++++++
T Consensus 385 -------------~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 385 -------------YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred -------------ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 2222222233333443433333344455566667777777777777777777777777777777777
Q ss_pred CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHh
Q 001414 584 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 663 (1082)
Q Consensus 584 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 663 (1082)
|....+|..+|.-+....+++.|..+|+.++...|. +..+|+.||.+ |+.. ++++.|.-.|++++.
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v-y~Kq------------ek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV-YLKQ------------EKLEFAEFHFQKAVE 517 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh-eecc------------chhhHHHHHHHhhhc
Confidence 777777777777777777777777777777766665 55667777777 6666 667777777777777
Q ss_pred hcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 001414 664 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 743 (1082)
Q Consensus 664 ~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~ 743 (1082)
++|.|......+|.++.+.|+.++|+.+|++++-.+| .++-..+..|.+++.++++++|+..++..-.. .|.+
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-----kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~e 590 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-----KNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQE 590 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Ccch
Confidence 7777777777777777777777777777777777666 56666677777777777777777777776554 5666
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
..+++.+|++|...|+...|+..|.-|..++|.-
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6777777777777777777777777777777643
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=1e-17 Score=186.85 Aligned_cols=410 Identities=19% Similarity=0.182 Sum_probs=324.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 311 LARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
...++.-..+..+++.....++.... .-.+....|-.+...+...|++..+.++|++++...-...+.|+.++.+|..
T Consensus 290 i~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 290 IEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSA 369 (799)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Confidence 33445555566666665554443221 1224455677788889999999999999999998877788999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH--hcCCHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHcC--
Q 001414 389 LGQIEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTK------AGEEVPIEVLNNIGVIHFEKG-- 456 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~--p~~~~~~~~la~~~--~~~~~~~Al~~l~~~------~~~~~~~~~~~~la~~~~~~g-- 456 (1082)
.|....|+.+++..+... |.++..+...+.++ ..+.+++++.+..+. ......+..+..+|.+|...-
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 999999999999999988 88888888888877 888999999888882 223445667777777765431
Q ss_pred ---------CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHH
Q 001414 457 ---------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 527 (1082)
Q Consensus 457 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 527 (1082)
...++++.++++++ .+|.++.+.+.++.
T Consensus 450 a~~~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lal 486 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLAL 486 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHH
Confidence 23456666666665 67888999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHH
Q 001414 528 LLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606 (1082)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 606 (1082)
-|...++...|....+++++.++ +.+.+|..|+.++...+++.+|+.+...++...|.|.........+-...++.++|
T Consensus 487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 99999999999999999999955 56899999999999999999999999999999998776666666666666666666
Q ss_pred HHHHHHhhhcCCC---------------------------CcH-----H-------------------------------
Q 001414 607 KETFRAASDATDG---------------------------KDS-----Y------------------------------- 623 (1082)
Q Consensus 607 ~~~~~~al~~~~~---------------------------~d~-----~------------------------------- 623 (1082)
+..+...+..-.. .+. +
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 6665554432210 000 0
Q ss_pred -----HHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001414 624 -----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 698 (1082)
Q Consensus 624 -----~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~ 698 (1082)
.|+..+.. |.. .++.+.|..++.++-.++|..++.++..|.++...|.+.+|...|..++..
T Consensus 647 ~~~~~lwllaa~~-~~~------------~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 647 YLLQKLWLLAADL-FLL------------SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHHHHHHH-HHh------------cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 01111111 111 277788888899999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 699 ASGSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 699 ~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~--~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
+| +.+.+...+|.++...|+..-|.. ++..+++. +|.++++|++||.++.+.|+.+.|..+|.-|+++.+.
T Consensus 714 dP-----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 714 DP-----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CC-----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 98 778899999999999998888888 99999998 7888999999999999999999999999999999999
Q ss_pred CcchhhH
Q 001414 777 NYTLRFD 783 (1082)
Q Consensus 777 ~~~~~~n 783 (1082)
+|...|.
T Consensus 787 ~PV~pFs 793 (799)
T KOG4162|consen 787 NPVLPFS 793 (799)
T ss_pred CCccccc
Confidence 9987764
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.4e-20 Score=216.84 Aligned_cols=305 Identities=18% Similarity=0.160 Sum_probs=222.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001414 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422 (1082)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~ 422 (1082)
...+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+.....
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------- 105 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------- 105 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------
Confidence 3456678888888888889999999888888888888888888888899998888888887643222110
Q ss_pred CCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhh
Q 001414 423 SDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 502 (1082)
Q Consensus 423 ~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1082)
...++..+|.++...|+++.|+.+|.+++.
T Consensus 106 ------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~-------------------------------- 135 (389)
T PRK11788 106 ------------------RLLALQELGQDYLKAGLLDRAEELFLQLVD-------------------------------- 135 (389)
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHc--------------------------------
Confidence 013466778888888888888888888776
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 503 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
..|....++..++.++...|++++|+..+..++...|.+ ...+..+|.++...|++++|+.+|+
T Consensus 136 -----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 136 -----------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred -----------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345566777888888888888888888888888777654 2245667777888888888888888
Q ss_pred HHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHH
Q 001414 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 657 (1082)
Q Consensus 578 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 657 (1082)
++++.+|.+..++..+|.++...|++++|+..|++++...|.....++..++.+ |... |++++|+..
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~A~~~ 271 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEAEGLEF 271 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHHHHHHH
Confidence 888888888878888888888888888888888888776655344555666766 6666 777777777
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 001414 658 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA--QGNFALAMKMYQNCL 735 (1082)
Q Consensus 658 ~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~--~g~~~~Ai~~~~~al 735 (1082)
+++++..+|+...+ ..++.++...|++++|+.+|.+++...| +++.+...++..+.. .|+..+|+..+++++
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P-----~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP-----SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc-----CHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 77777777765444 6777777777777777777777777766 444333223322211 347777777777777
Q ss_pred Hh
Q 001414 736 RK 737 (1082)
Q Consensus 736 ~~ 737 (1082)
+.
T Consensus 346 ~~ 347 (389)
T PRK11788 346 GE 347 (389)
T ss_pred HH
Confidence 53
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9.9e-18 Score=175.76 Aligned_cols=476 Identities=17% Similarity=0.196 Sum_probs=360.8
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
.|+..++.+--+...|+..|.--..++++..|..+|+++|..+..|...|+..+.+-++.+....|..++.+++.+-|..
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 45555666666777899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1082)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 275 (1082)
...|+.....-..+|+..-|.++|++-+...| +..+|.....+-+..++ ++.|...|++.+-.+| ....+...+
T Consensus 141 -dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP-~v~~wikya 214 (677)
T KOG1915|consen 141 -DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHP-KVSNWIKYA 214 (677)
T ss_pred -HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecc-cHHHHHHHH
Confidence 67888888888899999999999999999888 46678888888887777 8899999999887776 456778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc
Q 001414 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1082)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1082)
..-...|+...+..+|+.++.....+......+...|..-..+..++.|...|.-++..++.+.. -..+-.+...--+-
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQF 293 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHh
Confidence 88888899999999999988776665555666777777778888999999999999985432211 22233333333334
Q ss_pred CC---HHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHhcCCH
Q 001414 356 GD---FRSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ--AFIDLGELLISSDT 425 (1082)
Q Consensus 356 g~---~~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~--~~~~la~~~~~~~~ 425 (1082)
|+ .+.++ -.|+..+..+|.|.++|+..-.+-...|+.+.-.+.|++++...|.... .|....
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI-------- 365 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI-------- 365 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH--------
Confidence 44 33343 3577788889999999999988888889999999999999887765322 121111
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhh
Q 001414 426 GAALDAFKTKAGEEVPIEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 504 (1082)
Q Consensus 426 ~~Al~~l~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1082)
.+|.+.+. .-....+.+.+.+.|+.++..-|-
T Consensus 366 -----------------YLWinYalyeEle~ed~ertr~vyq~~l~lIPH------------------------------ 398 (677)
T KOG1915|consen 366 -----------------YLWINYALYEELEAEDVERTRQVYQACLDLIPH------------------------------ 398 (677)
T ss_pred -----------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc------------------------------
Confidence 22333332 234568889999999998874221
Q ss_pred hccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Q 001414 505 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584 (1082)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p 584 (1082)
..-..+.+|...|.....+.+...|..++-.++..+|.+ ...-....+-.+.++++....+|++.+..+|
T Consensus 399 ---------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 399 ---------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred ---------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 111356788888888889999999999999999999984 4444555667888999999999999999999
Q ss_pred CChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 585 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
.+..+|..+|.+-..+|+++.|..+|.-+++...- +..-++.-+ |... ..+.|.+++|..+|++.|..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpellwka---YIdF--------Ei~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELLWKA---YIDF--------EIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHH---hhhh--------hhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988875432 333332222 2221 11237788888888888877
Q ss_pred cCCCHHHHHHHH
Q 001414 665 HTSNLYAANGAG 676 (1082)
Q Consensus 665 ~p~~~~a~~~la 676 (1082)
.+... ++...|
T Consensus 537 t~h~k-vWisFA 547 (677)
T KOG1915|consen 537 TQHVK-VWISFA 547 (677)
T ss_pred cccch-HHHhHH
Confidence 66544 443333
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.1e-20 Score=214.03 Aligned_cols=274 Identities=21% Similarity=0.148 Sum_probs=222.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGL 205 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~ 205 (1082)
...+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+.. ...++..+|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999998854332 1356788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Q 001414 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-----MALNYLANHFFF 280 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~ 280 (1082)
+|...|+++.|+..|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+. ..+..++.++..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 9999999999999887653 244567777778
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHcCCHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~ 359 (1082)
.|++++|...+.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|+++
T Consensus 193 ~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 193 RGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred CCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHH
Confidence 888888888888877543 455667777888888888888888888887752 2332 345667777888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~ 412 (1082)
+|+..+++++...|+... +..++.++...|++++|+..|.+++...|++...
T Consensus 267 ~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 267 EGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 888888888877776543 3777888888888888888888888877776543
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=3.6e-19 Score=198.30 Aligned_cols=435 Identities=17% Similarity=0.137 Sum_probs=341.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1082)
+++..|-.+...+...|+|..+.+.|++++...-.....|..++.++...|.-..|+.+++..+... |+++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5677788888999999999999999999998888888999999999999999999999999999998 77766666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcc--------HHhHHHHHHHHHHHHHhCCCCHHH
Q 001414 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1082)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~ 270 (1082)
..|....|.+++++.+..+++.... -.+.++..+|..|...-. .....++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 7788889999999999999998432 134567777777654321 123678999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
.++++.-|...++...|......++... ....+.+|..++.++...+++..|+.....++... +.+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhh
Confidence 9999999999999999999999999763 24556899999999999999999999999999854 444444555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~- 420 (1082)
+-...++.++|+..+...+.....-+.+-..++ .+....++..+|...+.++...- ..-
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~-----------a~~~ 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV-----------ASQL 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH-----------Hhhh
Confidence 677789999999999998887654433333333 22222223333333333332210 000
Q ss_pred hcCCHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhh
Q 001414 421 ISSDTGAALDAFKTKAGEE----VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 496 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1082)
..-..+..+..+....+.. ....+|...+..+...++.++|..++.++..
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-------------------------- 678 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-------------------------- 678 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--------------------------
Confidence 0000000111000011110 0135677788889999999999999998877
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHH--
Q 001414 497 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE-- 574 (1082)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~-- 574 (1082)
+.|..+.+++..|.++...|...+|...|..++..+|+.+.+...+|.++...|+..-|..
T Consensus 679 -----------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 679 -----------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred -----------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 575 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 575 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
.+..+++++|.++++|+.+|.++.+.|+..+|..+|..++++.+.
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999998765
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.6e-19 Score=189.33 Aligned_cols=438 Identities=17% Similarity=0.131 Sum_probs=306.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001414 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1082)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1082)
..|...+..|+|+.|+.+|..++. .+|.+...|.+...+|..+|+|++|+.--.+.++++|+-+..|..+|..+.-+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~---l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIM---LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHc---cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 456677788888888888888887 55667777888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 001414 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDA 468 (1082)
Q Consensus 390 g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 468 (1082)
|+|++|+..|.+.++.+|++...+..++.++ .-++. +...+. .+.++..+...-... --.+.+.......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~-~~~~~~-------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYA-ADQLFT-------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHH-hhhhcc-------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 8888888888888888888888888887766 11111 111111 122222221110000 0011111111122
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCC---------CCcCCCC------------chHHHHHHHHH
Q 001414 469 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG---------NHVELPW------------NKVTVLFNLAR 527 (1082)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~------------~~~~~~~~la~ 527 (1082)
+..+|..-...- ....+-...+.+..-....+....... ......| ......-.+|.
T Consensus 155 ~~~~p~~l~~~l--~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 155 IQKNPTSLKLYL--NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred hhcCcHhhhccc--ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 221111000000 000000000000000000000000000 0000000 12334567899
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCh-------HHHHHhhhhhhcc
Q 001414 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKN 600 (1082)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~lg~~~~~~ 600 (1082)
......++..|++.|..++.++ .+...+...+.+++..|.+.+.+.....+++...... .+...+|..|.+.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999 8888899999999999999999988888777654322 2444577788889
Q ss_pred cchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001414 601 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680 (1082)
Q Consensus 601 g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 680 (1082)
++++.|+.+|.+++...-. .++ .-.. +..+++........-.+|.-......-|..++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt---------~~~-ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT---------PDL-LSKL------------KEAEKALKEAERKAYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC---------HHH-HHHH------------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 9999999999998765432 111 2222 66788888888888888887666667799999
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccH
Q 001414 681 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 760 (1082)
Q Consensus 681 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~ 760 (1082)
..|+|..|+..|.+++...| +++..|.|.|-||.++|++..|+.-.+.|++. +|+....|..-|.+++.+.+|
T Consensus 370 k~gdy~~Av~~YteAIkr~P-----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDP-----EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred hccCHHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 88999999999999999999999999999998 788899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 001414 761 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 791 (1082)
Q Consensus 761 ~eA~~~l~~al~~~p~~~~~~~nla~~~~~~ 791 (1082)
++|...|.++++++|++..+.-.+..+++.+
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999988887777775543
No 50
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=1.8e-17 Score=181.25 Aligned_cols=495 Identities=15% Similarity=0.147 Sum_probs=337.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001414 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
-.+++..+.-++..++|...++..+.+++..|.. +......|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH-geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEH-GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc-chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 3466777777889999999999999999999999 788899999999999999999999999999999999999999999
Q ss_pred HHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001414 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1082)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1082)
....+ |.+|+.+|..|+.+.|+|..++..++.+..+.++++.....-...++. .|..-..|+..+.+++-.|++
T Consensus 86 R~dK~---Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 86 RSDKK---YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhhh---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHH
Confidence 99988 999999999999999999999999999999999999888777777754 366678899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001414 322 EKAGLYYMASVKEINKPHEF-----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (1082)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (1082)
..|....+...+.....+.. ..+.....+++...|.+++|.+.+...-..--+........+.++.+++++++|.
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 99999999888754322222 2345566778889999999988887655444445567778899999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcch
Q 001414 397 ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL-DAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQ-SFKDALGDGI 473 (1082)
Q Consensus 397 ~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al-~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~ 473 (1082)
..|...+..+|++...+..+-.++ ...+..+++ ..|...............++.....-.++..... ++...+..+
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg- 318 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG- 318 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC-
Confidence 999999999999999888887776 344555555 4454433333333333333332222223322222 222222211
Q ss_pred hhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh-
Q 001414 474 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY- 552 (1082)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~- 552 (1082)
...+|..+.... ..|..+.+.-.++..|...=............- ..|..
T Consensus 319 ------------------------~p~vf~dl~SLy----k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~-~E~Ptt 369 (700)
T KOG1156|consen 319 ------------------------VPSVFKDLRSLY----KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK-QEPPTT 369 (700)
T ss_pred ------------------------CCchhhhhHHHH----hchhHhHHHHHHHHHHHhhcccccCCCcccccc-cCCchH
Confidence 111111111100 122222233333333322111110000000000 11222
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhH
Q 001414 553 -VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631 (1082)
Q Consensus 553 -~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~ 631 (1082)
..+++.++.-+...|+++.|..+++.++...|.-++.+..-+.++...|+++.|...+..+.++... |.+...--++.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKY 448 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHH
Confidence 3455667777888899999999999999988988888888888888888888888888888776544 44433333332
Q ss_pred HHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHH
Q 001414 632 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 711 (1082)
Q Consensus 632 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 711 (1082)
.+.+ +..++|.+...+..+. |. .|...+. +..-+|
T Consensus 449 -mLrA------------n~i~eA~~~~skFTr~------------------~~--~~~~~L~------------~mqcmW 483 (700)
T KOG1156|consen 449 -MLRA------------NEIEEAEEVLSKFTRE------------------GF--GAVNNLA------------EMQCMW 483 (700)
T ss_pred -HHHc------------cccHHHHHHHHHhhhc------------------cc--chhhhHH------------HhhhHH
Confidence 2222 4444444443322211 11 1111111 222344
Q ss_pred HH--HHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001414 712 IN--LAHVYFAQGNFALAMKMYQNCLRKFY 739 (1082)
Q Consensus 712 ~~--la~~~~~~g~~~~Ai~~~~~al~~~~ 739 (1082)
+. -|..|.++|++..|++-|..+-+.|.
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44 47888888888888888877777653
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=5.6e-20 Score=184.93 Aligned_cols=331 Identities=18% Similarity=0.224 Sum_probs=275.9
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001414 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1082)
Q Consensus 36 e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1082)
.++.+.-.+.++..++..|++.+|+..+-.|++.++.. ..+++..|.+|+.+|+.. -|+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk-----------~al~ 93 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSK-----------AALQ 93 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCc-----------cchh
Confidence 34556678899999999999999999999998876643 347788899999999887 7999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcCChHH
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PA------------LLGQACVEFNRGRYSD 180 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a------------~~~la~~~~~~g~~~~ 180 (1082)
-+.+++++.|+...+.+.+|.+++++|.+++|..-|+.++..+|++. .+ +......++..|++..
T Consensus 94 Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 94 DLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh
Confidence 99999999999999999999999999999999999999999999652 12 2334455667899999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHH
Q 001414 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1082)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1082)
|+.+...++...|-+ ...+...+.||...|....|+..+..+-++..++.+.++.++.+++..|+ ...++...+.+
T Consensus 174 ai~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iREC 249 (504)
T KOG0624|consen 174 AIEMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIREC 249 (504)
T ss_pred HHHHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHH
Confidence 999999999999998 78899999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC
Q 001414 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1082)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1082)
++++|+.-..+-.. ....+..+.++ -+......++|.+++...++.++ ..|.
T Consensus 250 LKldpdHK~Cf~~Y-------KklkKv~K~le------------------s~e~~ie~~~~t~cle~ge~vlk---~ep~ 301 (504)
T KOG0624|consen 250 LKLDPDHKLCFPFY-------KKLKKVVKSLE------------------SAEQAIEEKHWTECLEAGEKVLK---NEPE 301 (504)
T ss_pred HccCcchhhHHHHH-------HHHHHHHHHHH------------------HHHHHHhhhhHHHHHHHHHHHHh---cCCc
Confidence 99999876433221 11112222222 12344567899999999999998 4444
Q ss_pred C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 341 F----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 341 ~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 416 (1082)
. ...+-.+..|+...|++.+|+..+..++...|+++.++...+.+|.-...|+.|+..|+++.+.++++..+...+
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 2 233455778899999999999999999999999999999999999999999999999999999999998776665
Q ss_pred HH
Q 001414 417 GE 418 (1082)
Q Consensus 417 a~ 418 (1082)
-.
T Consensus 382 e~ 383 (504)
T KOG0624|consen 382 ER 383 (504)
T ss_pred HH
Confidence 43
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.7e-18 Score=175.42 Aligned_cols=409 Identities=14% Similarity=0.103 Sum_probs=325.2
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001414 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1082)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1082)
.+.+....+..+.+|...++-+.|+........ ....+.....++..+..-++-.++.-.|..++...| -++-
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~----t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp---~aL~ 165 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP----TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP---MALQ 165 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCc----cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc---hHHH
Confidence 456677788899999999999999988876653 223334445566666666666677767777766544 3333
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHhcCCHHHHHHHH--H-hhcCCCCCHHHHHHHHHHHH
Q 001414 381 ALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQAFID---LGELLISSDTGAALDAF--K-TKAGEEVPIEVLNNIGVIHF 453 (1082)
Q Consensus 381 ~la~~~~-~~g~~~~A~~~l~kal~~~p~~~~~~~~---la~~~~~~~~~~Al~~l--~-~~~~~~~~~~~~~~la~~~~ 453 (1082)
.++.++. ..+-++.+- .-..++...|.++..|.. ++.++ .++...|...+ - .....+.+..++..+|.+++
T Consensus 166 ~i~~ll~l~v~g~e~~S-~~m~~~~~~~~~dwls~wika~Aq~~-~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 166 VIEALLELGVNGNEINS-LVMHAATVPDHFDWLSKWIKALAQMF-NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY 243 (564)
T ss_pred HHHHHHHHhhcchhhhh-hhhhheecCCCccHHHHHHHHHHHHH-hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh
Confidence 3322221 111222221 112234455655544433 33333 33333333332 2 26667788899999999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001414 454 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533 (1082)
Q Consensus 454 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 533 (1082)
..|++.+|+..|+++.. .+|...+..-..|.++...|
T Consensus 244 ~~Gdn~~a~~~Fe~~~~-------------------------------------------~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLC-------------------------------------------ANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred hhcCchHHHHHHHHHhh-------------------------------------------CChhhhhhHHHHHHHHHhcc
Confidence 99999999999999887 67888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 534 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 534 ~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
+++.-..+....+........-|+.-+..++..+++..|+.+..+++..+|.+..++...|.++...|+.++|+-.|+.+
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 99999999999888887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHhc-CCchHHHHH
Q 001414 614 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEK-GQFDVSKDL 691 (1082)
Q Consensus 614 l~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la-~~~~~~-~~~~~A~~~ 691 (1082)
..+.|. +..++-.|..+ |+.. |.+.+|.-.-+.+++..|.+..++..+| .++... .--++|..+
T Consensus 361 q~Lap~-rL~~Y~GL~hs-YLA~------------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 361 QMLAPY-RLEIYRGLFHS-YLAQ------------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred Hhcchh-hHHHHHHHHHH-HHhh------------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999988 88889899999 9999 9999999999999999999999998886 555543 456789999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 001414 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 771 (1082)
Q Consensus 692 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 771 (1082)
+++.+...| ....+-..+|.++...|.+..+|.++++.+.. -+|......||.++...+.+++|+..|..|+
T Consensus 427 ~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 427 AEKSLKINP-----IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHhhhccCC-----ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999998 67788889999999999999999999999997 4677889999999999999999999999999
Q ss_pred hhCCCCcchhhH
Q 001414 772 HLAPSNYTLRFD 783 (1082)
Q Consensus 772 ~~~p~~~~~~~n 783 (1082)
.++|++....-.
T Consensus 499 r~dP~~~~sl~G 510 (564)
T KOG1174|consen 499 RQDPKSKRTLRG 510 (564)
T ss_pred hcCccchHHHHH
Confidence 999998554443
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-17 Score=170.17 Aligned_cols=286 Identities=17% Similarity=0.113 Sum_probs=214.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 337 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 416 (1082)
.-++++..+..+|.+++..|++.+|+..|+++.-++|.+...+-..|.++.+.|+++.-..+....+........-|+.-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 44666677777788888888888888888888777787777777777777777777777777666666665555555555
Q ss_pred HHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001414 417 GELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 494 (1082)
Q Consensus 417 a~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1082)
+.++ ..+++..|+.+..+ +...+.....+...|.++...|+.++|+-.|+.+..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------------ 362 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM------------------------ 362 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh------------------------
Confidence 5544 67777777777776 455556667777778888888888888888888876
Q ss_pred hhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHH-HHHH-HhcCHHHH
Q 001414 495 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAK-ARNNLQLS 572 (1082)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la-~~~~-~~g~~~eA 572 (1082)
..|....+|-.+..+|...|.+.+|...-+.++...|.++.++..+| .++. .-.--++|
T Consensus 363 -------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 363 -------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred -------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH
Confidence 55667778888888888888888888888888888888888877776 3332 23345678
Q ss_pred HHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHH
Q 001414 573 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 652 (1082)
Q Consensus 573 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~ 652 (1082)
.+++++++.+.|....+...++.++...|.+..++..+++.+...+ |...+..||++ +... +.+.
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~-~~A~------------Ne~Q 488 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDI-MRAQ------------NEPQ 488 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHH-HHHh------------hhHH
Confidence 8888888888888888888888888888888888888888887665 45666778888 7777 7888
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001414 653 KAKELYTRVIVQHTSNLYAANGAGVVLA 680 (1082)
Q Consensus 653 ~A~~~~~~~l~~~p~~~~a~~~la~~~~ 680 (1082)
+|+..|..+|+++|++-.+.-++-.+-.
T Consensus 489 ~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 8888888888888888777766544433
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-15 Score=160.17 Aligned_cols=467 Identities=13% Similarity=0.163 Sum_probs=375.4
Q ss_pred HHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 90 GVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1082)
Q Consensus 90 a~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1082)
...|.+.|+.+. -++++..|...|++|+..+..+...|+..+.+-++......|..++++++..-|.--..|+...
T Consensus 73 ~~~WikYaqwEe----sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 73 MQVWIKYAQWEE----SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 445777788773 4678889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHh
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1082)
.+--..|+...|.++|.+.+...|+. .+|......-.+.+..+.|..+|++.+-..| ....|+..+.+-...|+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~--- 222 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGN--- 222 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCc---
Confidence 88899999999999999999999986 5678888888889999999999999998887 57789999999999998
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchH-HHHHHHHHHHHcCC---HH
Q 001414 250 IRKGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-SYYNLARSYHSKGD---YE 322 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~la~~~~~~g~---~~ 322 (1082)
...+..+|.+++....++. ......|..-..+..++.|.-+|.-++...+.+ .+. .+-.+...--+-|+ .+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999998766543 445556666677888999999999998654322 222 22222222223344 34
Q ss_pred HHHH-----HHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHH---H
Q 001414 323 KAGL-----YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-------TLKALGHIY---V 387 (1082)
Q Consensus 323 ~A~~-----~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~---~ 387 (1082)
.++. .|+..+. .+|.+..+|+....+--..|+.+.-..+|++++..-|...+ +|..+-.++ .
T Consensus 301 d~Iv~KRk~qYE~~v~---~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVS---KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHhhhhhhHHHHHHH---hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3455555 78888899999999999999999999999999998776432 222222222 2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001414 388 QLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAH 462 (1082)
Q Consensus 388 ~~g~~~~A~~~l~kal~~~p~~----~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 462 (1082)
...+.+.+..+|+.++.+-|.. ...|+..+... .+.+...|..++-...+..+...++.....+-.++++++...
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 4478999999999999998864 56777777776 888999999999998888888888888888889999999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHH
Q 001414 463 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 542 (1082)
Q Consensus 463 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 542 (1082)
.+|++.+. ..|.+..+|...|.+-..+|+.+.|..+|
T Consensus 458 kLYEkfle-------------------------------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 458 KLYEKFLE-------------------------------------------FSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHHHHHh-------------------------------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999988 77889999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhh-----ccc-----------chH
Q 001414 543 RLILFKYQDYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL-----KND-----------DWV 604 (1082)
Q Consensus 543 ~~~l~~~p~~~~a~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-----~~g-----------~~~ 604 (1082)
.-+++...-+..-++..+ ..-...|.++.|..+|+.++...+... +|...+.+-. ..+ ...
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 999987654444333333 445678999999999999999987655 7777777655 344 466
Q ss_pred HHHHHHHHhhh
Q 001414 605 KAKETFRAASD 615 (1082)
Q Consensus 605 ~A~~~~~~al~ 615 (1082)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.82 E-value=6.6e-14 Score=152.75 Aligned_cols=594 Identities=13% Similarity=0.141 Sum_probs=330.7
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--c------CChHHHHHHHHHH
Q 001414 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN--R------GRYSDSLEFYKRA 188 (1082)
Q Consensus 117 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~--~------g~~~~Al~~~~~a 188 (1082)
|+.-+-.+|.+...|......... .-..+-.-+|+++++.-|.+...|+..-..-.. . .-|..--.+|+++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 334445566666666554333222 223444556777777777776666543321111 1 1244455566666
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC
Q 001414 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1082)
+..-... +.+|+.....+..+|+...-+..|.++|..-|- +...|-....+....+- ..-++..|++.++..|.
T Consensus 95 lv~mHkm-pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l---Pets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 95 LVFMHKM-PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL---PETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC---hHHHHHHHHHHHhcCHH
Confidence 6655555 566777777777777777777777777776663 33445444444444444 56777777777777776
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----CCCCCchHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhhCCCC
Q 001414 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAG---LYYMASVKEINKPH 339 (1082)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~~ 339 (1082)
.. ......+...++.++|.+.+...+... ...+.+-..|..+.....+.-+.-..+ ..+...+..+ ..
T Consensus 171 ~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tD 245 (835)
T KOG2047|consen 171 AR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TD 245 (835)
T ss_pred HH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cH
Confidence 53 344456666777777777777666321 122333344444444443332222211 1222222211 12
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHH-----HHHHcC-------------CHHHHHHH
Q 001414 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKALGH-----IYVQLG-------------QIEKAQEL 398 (1082)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~-----~~~~~g-------------~~~~A~~~ 398 (1082)
.....|..||..|++.|.+++|...|++++..-- +...++-..+. +-.+++ +.+-....
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 2334566777777777777777777777765421 11111111100 000000 11112222
Q ss_pred HHHHH------------HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 399 LRKAA------------KIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 466 (1082)
Q Consensus 399 l~kal------------~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 466 (1082)
|+.++ ..+|++...|..... +..|+..+-+..|.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~----------------------------------l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK----------------------------------LYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh----------------------------------hhcCChHHHHHHHH
Confidence 22222 223333333333322 24455555555555
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001414 467 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 546 (1082)
Q Consensus 467 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 546 (1082)
+|+..-.. ......-...+..+|..|...|+.+.|..+|+++.
T Consensus 372 eAv~~vdP-------------------------------------~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 372 EAVKTVDP-------------------------------------KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHccCc-------------------------------------ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 55552100 00111223455556666666666666666666665
Q ss_pred HhCC----ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC------------------CChHHHHHhhhhhhcccchH
Q 001414 547 FKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------------------KYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 547 ~~~p----~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p------------------~~~~~~~~lg~~~~~~g~~~ 604 (1082)
...- +-...|...|.+-....+++.|+.+++.+...-. .+..+|..++.+....|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5331 1144555555555556666666666555543211 13447777777777788888
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHH--
Q 001414 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLA-- 680 (1082)
Q Consensus 605 ~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~-- 680 (1082)
.....|.+++.+.-. .+....+.+.. +-.. ..++++.+.|++.+.+.| .-...|+..-..+.
T Consensus 495 stk~vYdriidLria-TPqii~NyAmf-LEeh------------~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMF-LEEH------------KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHH-HHhh------------HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 888888888775433 44444445544 4444 677888888888777763 33334433322222
Q ss_pred -hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---
Q 001414 681 -EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE--- 756 (1082)
Q Consensus 681 -~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~--- 756 (1082)
....++.|..+|+++++..|.. ..-.+|+..+..--.-|--..|+.+|+++-.. ....-.+.+-.+|.+
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~---~aKtiyLlYA~lEEe~GLar~amsiyerat~~----v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPE---HAKTIYLLYAKLEEEHGLARHAMSIYERATSA----VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHH
Confidence 2347888888999998877621 22334555677777778888888888887664 222222222233332
Q ss_pred --hccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001414 757 --AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLH 830 (1082)
Q Consensus 757 --~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~~ 830 (1082)
-|- ...+.+|++|++.-|++...-+.|-++ +++..+++.+.|+.+|..-++.-+|.
T Consensus 634 e~yGv-~~TR~iYekaIe~Lp~~~~r~mclrFA-----------------dlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 634 EIYGV-PRTREIYEKAIESLPDSKAREMCLRFA-----------------DLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred HHhCC-cccHHHHHHHHHhCChHHHHHHHHHHH-----------------HHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 232 446788999999999987776666554 79999999999999999999887663
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.81 E-value=7.2e-14 Score=152.50 Aligned_cols=659 Identities=13% Similarity=0.107 Sum_probs=414.2
Q ss_pred HHhcCCChhHHHHHHHHHHHcCCHH-HHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhh-hhhhhHHHH
Q 001414 33 LKAEQAPLDLWLIIAREYFKQGKVE-QFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET-KQREKEEHF 110 (1082)
Q Consensus 33 l~~e~~~~~~~~~~a~~y~~~g~~~-~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~-~~~~k~~~~ 110 (1082)
|.-.|-++..|+.-.. +++|... +-..++++++..-+ .+ +.|..-|++...... ..-.-+..|
T Consensus 20 ilRnp~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp-----~s--------ykiW~~YL~~R~~~vk~~~~T~~~~ 84 (835)
T KOG2047|consen 20 ILRNPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELP-----GS--------YKIWYDYLKARRAQVKHLCPTDPAY 84 (835)
T ss_pred HHcCchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCC-----Cc--------hHHHHHHHHHHHHHhhccCCCChHH
Confidence 3446777888987543 3444444 34456788766522 21 234444553322211 011124567
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001414 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1082)
Q Consensus 111 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1082)
..--.+|++++-.-..-|..|+.....+..+|+...-...|+++|..-|- +...|-.........+-..-++..|++.
T Consensus 85 ~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 77888888888766677889999999999999999999999999998873 3445555555666778888999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHH
Q 001414 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1082)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 261 (1082)
|+..|.. .-.....+...++.++|...|...+.. .|.+...|..+..+..+..+...--..-..+...+
T Consensus 165 Lk~~P~~----~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKVAPEA----REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HhcCHHH----HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 9999987 334556778899999999999998754 35566778888887776654222223334566666
Q ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhCCC
Q 001414 262 EIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKP 338 (1082)
Q Consensus 262 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~ 338 (1082)
...++. ...|..||.+|.+.|.+++|..+|+.+++..-...+...++-..+. |++....+.- +.......
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~-------FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ-------FEESCVAAKMELADEESGNE 313 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH-------HHHHHHHHHHhhhhhcccCh
Confidence 677664 4788899999999999999999999998754332222222222111 1111111000 10011111
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHH
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR-----DAQA 412 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~-~~p~-----~~~~ 412 (1082)
.+....-..++..-........- .=.-++..+|++...|.....++ .|+..+-+..|..++. .+|. ....
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTL 389 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhH
Confidence 11111111122111111111100 01123456777777777665554 5777778888877765 3443 2467
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhh
Q 001414 413 FIDLGELL-ISSDTGAALDAFKTKAG-----EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 486 (1082)
Q Consensus 413 ~~~la~~~-~~~~~~~Al~~l~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 486 (1082)
|..++.+| ..|+.+.|..++.+... ...-..+|...|..-....+++.|+.+.+.+........
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---------- 459 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---------- 459 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----------
Confidence 88888888 88888888888888222 222357888888888899999999999998876422100
Q ss_pred hhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 001414 487 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 566 (1082)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 566 (1082)
+.+|+....... .--....+|..++.+....|-++.....|.+++.+.--.+....+.|..+...
T Consensus 460 ------------~~~yd~~~pvQ~---rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 460 ------------LEYYDNSEPVQA---RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred ------------hhhhcCCCcHHH---HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 011110000000 00124567777888888888888888899998888777788888888888888
Q ss_pred cCHHHHHHHHHHHHHHc--CCChHHHHHhhhhhhc---ccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhc
Q 001414 567 NNLQLSIELVNEALKVN--GKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641 (1082)
Q Consensus 567 g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~ 641 (1082)
.-++++.+.|++.+.+. |.-.++|..+-..+.+ -...+.|...|+++++..|+.....++ |. |... .
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy-Ll---YA~l--E-- 596 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY-LL---YAKL--E-- 596 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH---HHHH--H--
Confidence 88888988888888877 4444555544333332 235788888888888876653333222 11 2221 1
Q ss_pred cCchHHhhHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001414 642 RAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 719 (1082)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 719 (1082)
.+-|--..|+.+|+++-..-+ .+....+++-+.-+ ..=-......+|+++++..|++ ......+..+..-.
T Consensus 597 ----Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 597 ----EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLET 669 (835)
T ss_pred ----HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhh
Confidence 112777888888888765433 33333333322111 1122445677888888888754 33445566778888
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHH
Q 001414 720 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 761 (1082)
Q Consensus 720 ~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~ 761 (1082)
..|..+.|..+|.-+.+..+...++..|..--..-.+.|+-+
T Consensus 670 klGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 888888888888888887655555777776666666777733
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.2e-19 Score=197.82 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001414 446 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 525 (1082)
Q Consensus 446 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 525 (1082)
..++.+++..|++++|+..+.+.+... .+|.++..+..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 466999999999999999997665421 146788899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHH
Q 001414 526 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 605 (1082)
Q Consensus 526 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 605 (1082)
|.+....++++.|+..|++++..++.++..+.+++.+ ...+++++|+.++.++.+..+ ++..+..+..++...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999988 799999999999999988664 57777888888999999999
Q ss_pred HHHHHHHhhhcC-CCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 001414 606 AKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 684 (1082)
Q Consensus 606 A~~~~~~al~~~-~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~ 684 (1082)
+...+.++.... ...++..+..+|.+ +... |+.++|+.+|+++++.+|+++.+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 999999977643 23477888899999 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHH
Q 001414 685 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 764 (1082)
Q Consensus 685 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 764 (1082)
.+++..++.......| .++.+|..+|.+|..+|++++|+.+|+++++. .|.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 67889999999999999999999999999997 7889999999999999999999999
Q ss_pred HHHHHHHhh
Q 001414 765 KSLLRAIHL 773 (1082)
Q Consensus 765 ~~l~~al~~ 773 (1082)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988753
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.1e-16 Score=190.45 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCH
Confidence 466666666666666666666666666655432 23566677777777777766 55666666666666777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
++|+..|++++.++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777777766666666766666666 66677777777777776665555555556666667667766666
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
++... .|..+..+..+|.++...|++++|...+.++.. ..|....+...++..|...|+ .|...++.+++..-
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 65432 244456667777777777777777777776654 455555666667777776663 66666666555432
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
..+.-...+..+|.-.|+.+.+... +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222223366666677777666665 555443
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=8.1e-18 Score=168.48 Aligned_cols=251 Identities=16% Similarity=0.127 Sum_probs=229.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhh
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 597 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 597 (1082)
+......+|.||..+|.+.+|...++..++..|. ++.+..|+.+|....++..|+..|...+...|.+...+..++.++
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 3444567999999999999999999999998876 899999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001414 598 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 677 (1082)
Q Consensus 598 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 677 (1082)
..++++++|.++|+.+++..|. +..+...++.- ||.. ++.+-|+.+|+++|+..-.++..+.++|.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~-yfY~------------~~PE~AlryYRRiLqmG~~speLf~NigL 366 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVG-YFYD------------NNPEMALRYYRRILQMGAQSPELFCNIGL 366 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeec-cccC------------CChHHHHHHHHHHHHhcCCChHHHhhHHH
Confidence 9999999999999999998876 66666666666 7777 89999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 757 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~ 757 (1082)
++...++++-++..|++++...... ..-.++|+|+|++....|++..|...|+-||.. ++.+.+++.+||..-.+.
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~--~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQP--GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCc--chhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhc
Confidence 9999999999999999999876311 145789999999999999999999999999986 677899999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 758 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 758 g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
|+...|+.++..|..+.|.-....||++++
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeEE
Confidence 999999999999999999999999998875
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=4.4e-16 Score=178.49 Aligned_cols=301 Identities=15% Similarity=0.052 Sum_probs=214.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
.+..|.+.+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..+|.++.+..|+....+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 36678888999999999999999999999888888999999999999999999999999988887445666679999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1082)
|+++.|...++++++..|+++.++..++.++...|+ ++.|...+.+..+..+.++.... .....+...+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999988887554443322 11111122333333
Q ss_pred HHHHHHHHHhccC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHHcCCHHHHHH
Q 001414 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSALT 363 (1082)
Q Consensus 287 A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~ 363 (1082)
+...+..+....+ ..+..+..+..++..+...|++++|...+.++++. .|+.... ........+..++...++.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 3334444443221 12245667777777777777777777777777763 2333221 1222223334466677777
Q ss_pred HHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 001414 364 NFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEE 439 (1082)
Q Consensus 364 ~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~ 439 (1082)
.+++.++..|+++ ..+..+|.++.+.|++++|..+|+ .++...|++
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~------------------------------ 370 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA------------------------------ 370 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH------------------------------
Confidence 7777777777777 666677777777777777777777 455555543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 440 VPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 440 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
..+..+|.++...|+.++|..+|++++.
T Consensus 371 ---~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 371 ---NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344667777788888888888888765
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.2e-18 Score=189.80 Aligned_cols=257 Identities=24% Similarity=0.308 Sum_probs=89.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+.+.+|+++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666664443332 333 45555666666666666666666666666666655555555555 444
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001414 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1082)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1082)
++ +.+|+.++.++++..+ ++..+..++.++...++++.+..++..+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44 6666666666655443 34445555556666666666666666655322 2234556677777777777777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
+..|++++. ..|++..+...++.+++..|+++++...+.......|.++..+..+|.+|..+|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 777777776 45666666777777777777777777777666666666666777777777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHH
Q 001414 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFK 433 (1082)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~Al~~l~ 433 (1082)
.+|+++..+..++.++ ..|+.++|..++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 7777766666655555 5555555544443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=165.28 Aligned_cols=274 Identities=17% Similarity=0.189 Sum_probs=243.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001414 136 QLLLAKGEVEQASSAFKIVLEAD---RDN-------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1082)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~~-------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1082)
.+++..++...|-......+... |.. ...-..+|.||++.|.+.+|.+.++..+...|.. +.+..++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 45666777777776666655442 211 1222578999999999999999999999988874 77899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001414 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1082)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++.-|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001414 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1082)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1082)
-|..+|.++++.+ ...++.+.++|.|++..++++-++..|++++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMG---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhc---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 9999999999876 4556899999999999999999999999999866556667889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
.-++..+|++.+++.+||.+-.+.|+...|..++..+....|.-.+..++++
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999999999999998776665554
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=1.6e-16 Score=189.04 Aligned_cols=264 Identities=15% Similarity=0.070 Sum_probs=206.2
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 001414 157 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 222 (1082)
Q Consensus 157 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~ 222 (1082)
..|.+..+ ++..|...+.. +.+.+|+.+|++++.++|++ +.++..+|.|+..++ ++.+|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44455443 23444433332 45689999999999999998 777888888877443 37899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 001414 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1082)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1082)
+++++|+++.++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999999664 5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001414 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1082)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1082)
..+..++.++.+++..|++++|+..+.+++.. .+|..+.++..+|.++...|++++|...+.++....|....++..+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 45555666677788889999999999998863 2466777788899999999999999999999888888888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001414 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (1082)
Q Consensus 383 a~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~ 431 (1082)
+.+|...|+ .|...++++++..-........+..++ ..|+.+.+..+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 988888884 777777776654322222222255566 66666666655
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.4e-15 Score=150.53 Aligned_cols=378 Identities=15% Similarity=0.123 Sum_probs=199.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHH
Q 001414 137 LLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1082)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~ 215 (1082)
-++...+|.-|+.+++..+..+... ...-+++|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3455566666666666655443322 2444556666666666666666666655532 2235566666666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1082)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1082)
|...-.++ |+++-....+-.+..+.++ -.+-..+...+-
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklnd-------------------------------------Ek~~~~fh~~Lq 148 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLND-------------------------------------EKRILTFHSSLQ 148 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHh
Confidence 66555443 4444433333333334443 111111111111
Q ss_pred hccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001414 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1082)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1082)
+..+-...++.+++..-.|.+|+..|.+++. .+|.....-..++.||+++.-|+-+...+.-.+...|+.
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 0113344566666666677778888877776 666666666777888888888888888888778888887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 001414 376 CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHF 453 (1082)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~ 453 (1082)
+-+...++..+.+.=+-..|..-........ ...+..-..+-.-+ .-.+-+.|++++-.. ....|++..++...|.
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L--~~~IPEARlNL~iYyL 296 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL--MKHIPEARLNLIIYYL 296 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH--HhhChHhhhhheeeec
Confidence 7777777776666533333333333332211 11111111110001 112223344443331 1223455666666666
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001414 454 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533 (1082)
Q Consensus 454 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 533 (1082)
.+++..+|+.+.+. ..|..+.-+...|.++...|
T Consensus 297 ~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 297 NQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred ccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHHHHHHhh
Confidence 66776666666543 34555555555566655555
Q ss_pred ChHHHHHHHHHHHH---hC------CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchH
Q 001414 534 DTVAASVLYRLILF---KY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 534 ~~~~A~~~~~~~l~---~~------p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 604 (1082)
+--...+.++-+-. .- -+.....-..+..++-..++++.+.+++..-...-++....++++..+...|++.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChH
Confidence 43333333222211 10 1112233344455555556666666666665555555566666666666666666
Q ss_pred HHHHHHHHhh
Q 001414 605 KAKETFRAAS 614 (1082)
Q Consensus 605 ~A~~~~~~al 614 (1082)
+|.+.|-++.
T Consensus 411 eaEelf~~is 420 (557)
T KOG3785|consen 411 EAEELFIRIS 420 (557)
T ss_pred HHHHHHhhhc
Confidence 6666665543
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=3e-15 Score=171.64 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+|+|..|...+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34555999999999999998888889999999999999999999999999999885 56777899999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHhccHHhHHHHHHHHHHHH
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAF 261 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~la~~~~~~~~~~~~~~A~~~~~~al 261 (1082)
+.++...|++ +.++..++.++...|+++.|...+.+.++..+.++..+. ....-.+..+. ...+...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 688999999999999999999999999987554444332 11111122332 455566788888
Q ss_pred HhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 001414 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1082)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1082)
...| +++.++..++..+...|+++.|...+.+++...+.++... ............++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-hHHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 5899999999999999999999999999997654332211 012333334456889999999999998 5
Q ss_pred CCCCh--hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.|+++ ..+..+|.+++..|++++|..+|+ .+++..|+... +..+|.++.+.|+.++|..++++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67777 778899999999999999999999 57778887655 559999999999999999999998654
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.5e-14 Score=155.36 Aligned_cols=460 Identities=13% Similarity=0.081 Sum_probs=274.6
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCC
Q 001414 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1082)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1082)
+...|+|++|.+...+++... |....++.....++.+.+.|++|+.....-.. ........+..+.|.++++.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHHccc
Confidence 334444555555555554332 34445555555566666666666633332111 01111112566777777777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 001414 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAG 437 (1082)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~ 437 (1082)
.++|+.++. ..++.+..++...|.+++++|+|++|+.+|+.+++.+.++.+.......+-. +-...+- .++....
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-~a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-AAALQVQ-LLQSVPE 169 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHhhhHH-HHHhccC
Confidence 777777777 2344555677777777777777777777777777766555444333322210 0000110 2222222
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCC
Q 001414 438 -EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 516 (1082)
Q Consensus 438 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 516 (1082)
.....+.++|.++++...|+|.+|++.+++++..+...-..++.. .-+...
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~----------------------------eEeie~ 221 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN----------------------------EEEIEE 221 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc----------------------------hhhHHH
Confidence 234668899999999999999999999999977543111111100 000222
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHH----HHHHHHHHHHhcCHH-HHHHHHHHHHHHcCC------
Q 001414 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----YLRLAAIAKARNNLQ-LSIELVNEALKVNGK------ 585 (1082)
Q Consensus 517 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a----~~~la~~~~~~g~~~-eA~~~~~~al~~~p~------ 585 (1082)
....+...++.++..+|+..+|..+|..++..+|.+... -++|..+-....-++ .++..++......++
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 345678889999999999999999999999998876433 223322221111112 122222222211111
Q ss_pred ----ChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHH
Q 001414 586 ----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 661 (1082)
Q Consensus 586 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 661 (1082)
...++.+.+.+.+..+...++.+.....-...|..-..++ +-.. +... ...+.+|.+++...
T Consensus 302 s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EKKHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HHHHhhhHHHHHHH
Confidence 1224555666666666666666655543333333211121 1111 1111 14688999999999
Q ss_pred HhhcCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 662 IVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 662 l~~~p~~-~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
...+|.+ ..+...++.+.+.+|++..|+.++...++....+ .....|.+--.+-..|...+.-+.|...+..++.-+
T Consensus 368 ~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 368 ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 9999987 6677788999999999999999999443221100 001345565666677778887777888888888754
Q ss_pred cCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 001414 739 YYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 791 (1082)
Q Consensus 739 ~~~~~-----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~ 791 (1082)
..... ..++--++....+.|+-++|...+++.++.+|++..+.-.+..+|...
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 33222 333445666677789999999999999999999988877776665533
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1e-14 Score=147.85 Aligned_cols=455 Identities=15% Similarity=0.145 Sum_probs=302.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhH
Q 001414 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1082)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1082)
-+....+|..|+.+++-.+..+......+...+|.|++++|+|++|+..|.-+...+.-+...++.|+.+++-.|. +
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y 107 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---Y 107 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---H
Confidence 4567788999999888877666554346778889999999999999998888877665566777777777777766 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1082)
.+|.....+ .|++| -....+-.+.++.++-.+-. .|..
T Consensus 108 ~eA~~~~~k----a~k~p-------------------------------------L~~RLlfhlahklndEk~~~-~fh~ 145 (557)
T KOG3785|consen 108 IEAKSIAEK----APKTP-------------------------------------LCIRLLFHLAHKLNDEKRIL-TFHS 145 (557)
T ss_pred HHHHHHHhh----CCCCh-------------------------------------HHHHHHHHHHHHhCcHHHHH-HHHH
Confidence 555544332 23333 22233333445555544433 3444
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 331 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
.++ +...-.+.|+.+.+..-.|++|+.+|.+++..+|+.......++.||+++.-++-+.+.+.-.++..|+++
T Consensus 146 ~Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 146 SLQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 443 23355678899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001414 411 QAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 490 (1082)
Q Consensus 411 ~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 490 (1082)
.+....+..+ ++.=+-..|..-.+.....
T Consensus 220 iA~NLkacn~--------------------------------fRl~ngr~ae~E~k~ladN------------------- 248 (557)
T KOG3785|consen 220 IAKNLKACNL--------------------------------FRLINGRTAEDEKKELADN------------------- 248 (557)
T ss_pred HHHHHHHHHH--------------------------------hhhhccchhHHHHHHHHhc-------------------
Confidence 7665554322 1111111111111111110
Q ss_pred hhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHH
Q 001414 491 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 570 (1082)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 570 (1082)
.....+.+-+.+-.-+.-..+-+.|++.+-..+..- +++.++|+..|..+++..
T Consensus 249 -----------------------~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVq 302 (557)
T KOG3785|consen 249 -----------------------IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQ 302 (557)
T ss_pred -----------------------ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHH
Confidence 000011111111111111123355665555555443 456777777788888888
Q ss_pred HHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh---hhcCC----C-CcHHHHHHhHhHHHHHHhhhhcc
Q 001414 571 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATD----G-KDSYATLSLGNWNYFAALRNEKR 642 (1082)
Q Consensus 571 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~~----~-~d~~~~~~Lg~~~y~~~~~~~~~ 642 (1082)
+|+.+.+. ++|..|.-+...|.++...|+-....++++-+ +.+.. . ......-+++.. +|..
T Consensus 303 eA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------ 372 (557)
T KOG3785|consen 303 EAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------ 372 (557)
T ss_pred HHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------
Confidence 88777665 67888888888888877777643333333322 11111 1 011122345555 6666
Q ss_pred CchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 001414 643 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 722 (1082)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 722 (1082)
.++++.+.++..+-...-++....+++|.+....|++.+|.+.|-++..-.- .+.......||.||...|
T Consensus 373 ------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 373 ------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNK 442 (557)
T ss_pred ------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcC
Confidence 7899999998888888888777888999999999999999999987754321 133445567899999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 723 NFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 723 ~~~~Ai~~~~~al~~~~~~~~-~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
++..|..+|-+ .. .|.+ ...+..++...++.+.+--|-+.|...-.++|+.
T Consensus 443 kP~lAW~~~lk---~~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 443 KPQLAWDMMLK---TN-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CchHHHHHHHh---cC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999888654 31 2333 5566677999999999999999998888888864
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.6e-14 Score=152.66 Aligned_cols=464 Identities=13% Similarity=0.088 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+++.|++|+...++.+.+.|+++.++.....++.+.++|++|+.+.+.-....-.+. ..+..|.|.++.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHH
Confidence 356777888888888888888888888888888888888888855443322222222 2278888888888888888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1082)
+ ..++.+ ..+....|..++++|+|++|...|+..++.+.++.+.......+..... .... +.+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhccCCC
Confidence 7 334444 4467778888888888888888888887776665555443332221110 0001 222222222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CCC---
Q 001414 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKP--- 338 (1082)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~--- 338 (1082)
. ..-+.+|+.+.++...|+|.+|++.+.++++.. ...
T Consensus 172 e------------------------------------~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~ 215 (652)
T KOG2376|consen 172 E------------------------------------DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN 215 (652)
T ss_pred c------------------------------------chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc
Confidence 2 122455666666666666666666666663210 000
Q ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---H-H-HHHHHHHHHHHhCCC
Q 001414 339 -----HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---I-E-KAQELLRKAAKIDPR 408 (1082)
Q Consensus 339 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~-~-~A~~~l~kal~~~p~ 408 (1082)
.....+...++.++...|+..+|...|..+++.+|.+.........-+..... + + .++..++......++
T Consensus 216 eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~ 295 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAE 295 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHH
Confidence 01123345566666666666666666666666665554332222211111100 0 0 111111111110000
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001414 409 DAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488 (1082)
Q Consensus 409 ~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 488 (1082)
..+..|.. .....++.+.+.+.+..+..+.+.+.....-.
T Consensus 296 ------------------~~l~~Ls~----~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~------------------ 335 (652)
T KOG2376|consen 296 ------------------FLLSKLSK----KQKQAIYRNNALLALFTNKMDQVRELSASLPG------------------ 335 (652)
T ss_pred ------------------HHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc------------------
Confidence 00000000 01112344444444444444443333222110
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhc
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARN 567 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g 567 (1082)
..|..................+..|..++......+|.. ..+.+.++.+.+..|
T Consensus 336 -------------------------~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 336 -------------------------MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred -------------------------cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 122222222222222233335667777777777777766 566667777777777
Q ss_pred CHHHHHHHHHHHH--------HHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhh
Q 001414 568 NLQLSIELVNEAL--------KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 639 (1082)
Q Consensus 568 ~~~eA~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~ 639 (1082)
++..|+..+...+ ... ..|.+...+..++.+.++...|...+..
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~--------------------------- 442 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDS--------------------------- 442 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHH---------------------------
Confidence 7777777776332 111 1222333333344444444444444443
Q ss_pred hccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001414 640 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 719 (1082)
Q Consensus 640 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 719 (1082)
|+.+|.....-.+.-...+-..+.+-.+.|+-.+|...+++++...| .+.++...+...|.
T Consensus 443 --------------Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-----~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 443 --------------AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-----NDTDLLVQLVTAYA 503 (652)
T ss_pred --------------HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-----chHHHHHHHHHHHH
Confidence 44444333322222222233345555566888888888888888887 66778877777776
Q ss_pred HcCCHHHHHHH
Q 001414 720 AQGNFALAMKM 730 (1082)
Q Consensus 720 ~~g~~~~Ai~~ 730 (1082)
.. +.+.|..+
T Consensus 504 ~~-d~eka~~l 513 (652)
T KOG2376|consen 504 RL-DPEKAESL 513 (652)
T ss_pred hc-CHHHHHHH
Confidence 64 45565544
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=1.7e-14 Score=164.40 Aligned_cols=295 Identities=13% Similarity=0.041 Sum_probs=217.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
.+..|...+..|+|+.|.+.+.+.....+.....++..+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988877655443333444444666699999999999999999999988434445568999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHH--------HHHHHHcC
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--------ANHFFFTG 282 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------a~~~~~~g 282 (1082)
|+++.|...++++++.+|+++.++..++.++...|+ ++.|+..+....+..+.++.....+ ........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 9999999999888776655433311 11111122
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1082)
+.+....+.... ....+.++.....++..+...|+.++|...+.++++ .++ ...... ....+..+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~--l~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVL--LIPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHH--HHhhccCCChHHHH
Confidence 222222222222 222356778888899999999999999999988886 222 222222 22233458888999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCH
Q 001414 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPI 442 (1082)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~ 442 (1082)
..+++.++.+|+++..+..+|.++...+++.+|..+|++++...|++.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-------------------------------- 362 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-------------------------------- 362 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--------------------------------
Confidence 999999999999999999999999999999999999999998888753
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 443 EVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 443 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
.+..++.++...|+.++|..+|++++.
T Consensus 363 -~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 363 -DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 233456666677777777777777765
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=2.4e-15 Score=163.85 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001414 108 EHFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1082)
+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|.+++..+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455688888999886444 2366799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
.|++++.++|++ ..++..+|.++...|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.++...
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999999 77899999999999999999999999999999887422221 22333445 88888888776654
Q ss_pred C
Q 001414 264 Y 264 (1082)
Q Consensus 264 ~ 264 (1082)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=2.5e-14 Score=163.04 Aligned_cols=285 Identities=12% Similarity=0.094 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
|+|.+|.+.+.++....+.....++..+......|+++.|..+|.++.+.+|++.. ..+..+.++...|+++.|+..++
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45558888888765554333344444567779999999999999999999999854 44455999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHhccHHhHHHHHHHHH
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--------ALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
++....|++ +.++..++.+|...|+++.|+..+.++.+..+.++.... .+........+ .+.....++
T Consensus 178 ~~~~~~P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---~~~l~~~w~ 253 (398)
T PRK10747 178 KLLEVAPRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---SEGLKRWWK 253 (398)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 999999999 788999999999999999999999999987776544322 11111111111 333444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 001414 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1082)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1082)
..-...|+++.+...++..+...|+.+.|...+.+.+.. +.++......+. ...+++++++..+++.++ ..
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk---~~ 324 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDERLVLLIPR--LKTNNPEQLEKVLRQQIK---QH 324 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHhh--ccCCChHHHHHHHHHHHh---hC
Confidence 444556789999999999999999999999999999863 223333333333 355999999999999998 77
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~ 406 (1082)
|+++..++.+|.++...+++.+|...|+++++..|++. .+..++.++...|+.++|..+|++.+.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88899999999999999999999999999999998754 46689999999999999999999998753
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=8.5e-16 Score=167.01 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=205.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001414 446 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 525 (1082)
Q Consensus 446 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 525 (1082)
+..|+.+++.|...+|.-.|+.++. .+|.++.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 4568889999999999999999988 678899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHH-------hhhhhh
Q 001414 526 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM-------LGDLEL 598 (1082)
Q Consensus 526 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-------lg~~~~ 598 (1082)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-+...|........ ...-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999888764322111 000111
Q ss_pred cccchHHHHHHHHHhhhcCC-CCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001414 599 KNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 677 (1082)
Q Consensus 599 ~~g~~~~A~~~~~~al~~~~-~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 677 (1082)
.......-.+.|-.+....| ..|+.+...||-+ |... |.|++|+.+|+.+|...|+|...||.||.
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 12224444555555555444 3578888889988 8877 99999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---CC-----HHHHHH
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN---TD-----AQILLY 749 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~---~~-----~~~~~~ 749 (1082)
.++...+..+|+..|++++++.| ..+.+++|||.+|+.+|.|.+|+++|-.+|...... .. -.+|.+
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 778899999999999999999999999999764331 11 246666
Q ss_pred HHHHHHHhccHHHHH
Q 001414 750 LARTHYEAEQWQDCK 764 (1082)
Q Consensus 750 La~~~~~~g~~~eA~ 764 (1082)
|=.++...++.+-+.
T Consensus 548 LR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 548 LRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHcCCchHHH
Confidence 666666666655333
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=3.4e-15 Score=144.28 Aligned_cols=210 Identities=21% Similarity=0.201 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
..+++.+|.-|+..|++..|...++++|+.+|++..+|..++.+|...|+ .+.|-+.|+++++++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 56788889999999999999999999999999999999999999999988 888999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcC
Q 001414 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1082)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1082)
.++.+|.+++|...|++++... ..+..+.++.++|.|..+.|+++.|..+|++++. ..|++..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 9999999999999999988653 4466778999999999999999999999999998 77888899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001414 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1082)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~ 413 (1082)
+|-.|...++......+-..+.+.....+-...|+.+.+-.+=.++....|......
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999998888899999999999999999999999888888999876543
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.1e-15 Score=156.71 Aligned_cols=311 Identities=16% Similarity=0.136 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1082)
-....|..++...+|.+|+..|..++...|.+ ...|...+.+++..|+++.|....++.++++|..+......+.++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 34556666666777777777777777777776 55666677777777777777777777777766666666666666666
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1082)
Q Consensus 244 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1082)
.++ ..+|-..|+ +. .++ ....
T Consensus 130 ~~~---~i~A~~~~~--------~~-------------------------------------~~~-----------~~an 150 (486)
T KOG0550|consen 130 LSD---LIEAEEKLK--------SK-------------------------------------QAY-----------KAAN 150 (486)
T ss_pred hHH---HHHHHHHhh--------hh-------------------------------------hhh-----------HHhh
Confidence 555 444443333 00 000 1223
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
|+..+++.+......|....+.+.-+.++...|+++.|...--.++++++.+.++++..|.+++-.++.+.|+..|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 33344444332222344445566678999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccc
Q 001414 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 483 (1082)
Q Consensus 404 ~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 483 (1082)
.++|++..+-..... +.....+..-|.-.++.|++..|.+.|..+|...|.
T Consensus 231 ~ldpdh~~sk~~~~~--------------------~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------- 281 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMM--------------------PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------- 281 (486)
T ss_pred ccChhhhhHHhHhhh--------------------HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc---------
Confidence 999987654333211 112356677788999999999999999999985431
Q ss_pred hhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 001414 484 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 563 (1082)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 563 (1082)
....++..|.+++.+...+|+..+|+.....+++++|.+..++.+.|.++
T Consensus 282 ------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 282 ------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred ------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 12236788999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHcCCChHHHHHhh
Q 001414 564 KARNNLQLSIELVNEALKVNGKYPNALSMLG 594 (1082)
Q Consensus 564 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 594 (1082)
...+++++|++.|+++++...+ .+....+.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 9999999999999999998766 44444443
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6.1e-16 Score=168.13 Aligned_cols=237 Identities=17% Similarity=0.190 Sum_probs=209.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
-|..|..+.+.|+..+|.-.|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..|+..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhcc----CchHHhhHHHHHHHHHHHHHhhcC--CCHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR----APKLEATHLEKAKELYTRVIVQHT--SNLYAANGA 675 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~----~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~l 675 (1082)
.-.+|..++.+-+...|+ |.++ ........ ........+..-.++|-.+....| .++.+..+|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~---y~~l--------~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPK---YVHL--------VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred hHHHHHHHHHHHHHhCcc---chhc--------cccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 999999999998887765 1111 11000000 011123567777888989999999 699999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
|.+|...|+|++|+++|+.++...| ++...|..||-++....+..+||..|.+|++. .|..+.+.|+||.++.
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~P-----nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKP-----NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCC-----chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhh
Confidence 9999999999999999999999998 88999999999999999999999999999998 6888999999999999
Q ss_pred HhccHHHHHHHHHHHHhhCCC
Q 001414 756 EAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 756 ~~g~~~eA~~~l~~al~~~p~ 776 (1082)
..|.|.+|.++|..||.+.+.
T Consensus 510 NlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999776
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=9e-15 Score=159.36 Aligned_cols=243 Identities=20% Similarity=0.180 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
..+.++..+..++...+..+ ..+..++.+|.+|...|++.+|+..|.+++. ..|+...+++.+|.++...|+++.|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34445555555664433333 3467899999999999999999999999998 6788899999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC
Q 001414 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP 441 (1082)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~ 441 (1082)
+..|+++++++|++..++..+|.++...|++++|+..|++++..+|+++.....+......+++.+|+..+.+......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~- 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD- 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999987432222112256678888888866221111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
+..+. .+.++...|++..+ ..+..+.... .......|....+
T Consensus 197 ~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~------------------------------------~~~~~l~~~~~ea 238 (296)
T PRK11189 197 KEQWG-WNIVEFYLGKISEE-TLMERLKAGA------------------------------------TDNTELAERLCET 238 (296)
T ss_pred ccccH-HHHHHHHccCCCHH-HHHHHHHhcC------------------------------------CCcHHHHHHHHHH
Confidence 11121 34555556666444 2333333210 0001123455677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN 567 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~g 567 (1082)
++++|.++...|++++|+.+|++++..+| +++...+.+..+....+
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888888875 55666665555544433
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=9.2e-15 Score=141.32 Aligned_cols=207 Identities=23% Similarity=0.189 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~ 421 (1082)
..+.+.||.-|+..|++..|...++++++.+|++..+|..++.+|...|..+.|.+.|++++.++|++.+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------- 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------- 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----------
Confidence 3457788888999999999999999999999999999999999999999999999999999998888764
Q ss_pred cCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhh
Q 001414 422 SSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501 (1082)
Q Consensus 422 ~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1082)
+++|.|.+++..|++++|..+|.+++...
T Consensus 105 ----------------------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P----------------------------- 133 (250)
T COG3063 105 ----------------------VLNNYGAFLCAQGRPEEAMQQFERALADP----------------------------- 133 (250)
T ss_pred ----------------------hhhhhhHHHHhCCChHHHHHHHHHHHhCC-----------------------------
Confidence 45556666666666666666666666531
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001414 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581 (1082)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 581 (1082)
.-+..+.++.|+|.|..+.|+++.|..+|++++..+|+++.+...++......|++-.|..+++....
T Consensus 134 ------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 134 ------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred ------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 22334556666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCc
Q 001414 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 621 (1082)
Q Consensus 582 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d 621 (1082)
..+-....+.....+-...|+-..+..+=.+.....|...
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 5555555555555555566666666655555555555533
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-15 Score=156.72 Aligned_cols=274 Identities=19% Similarity=0.203 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+...|..|+..|..|+...|.++..|..++.++...|+|+.|....++.+++.|.........+.|+...+...+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 35567799999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHH------------HhC------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Q 001414 186 KRAL------------QVH------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1082)
Q Consensus 186 ~~al------------~~~------p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1082)
+..- .+- |.+ ..+.+.-+.|+..+|+++.|...--..+++++.+..+++..|.++....+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 5211 111 333 44567789999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001414 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
.+.|+..|++++.++|....+-.... .+.....+..-|.-.+..|+|..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~~-------------------------~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSASM-------------------------MPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHhh-------------------------hHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 99999999999999998764332110 122235677778889999999999999
Q ss_pred HHHHHHhhCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001414 328 YMASVKEINKP-HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1082)
Q Consensus 328 ~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~ 406 (1082)
|..++..-+.+ ..++..|.+++.+...+|+..+|+..++.+++++|....++...|.|+..+++|++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999732211 12345688899999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 001414 407 PR 408 (1082)
Q Consensus 407 p~ 408 (1082)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 54
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=3.7e-13 Score=135.91 Aligned_cols=300 Identities=20% Similarity=0.257 Sum_probs=240.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 206 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~lg~~ 206 (1082)
-+..|.-++...+.++|+..|-.+++.+|....+.+.+|.++.+.|..+.|+.+.+..+. .|+. ...+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999999999999999999999999887654 5665 23466789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1082)
|+..|-++.|...|........--..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~---------------- 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV---------------- 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh----------------
Confidence 9999999999999999877655566788888888888888 888998888888887755422
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001414 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1082)
..+..|..++..+....+++.|+..+.++++ .+|..+.+-+.+|.++...|+|..|+..++
T Consensus 178 ----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 178 ----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred ----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 2235667788888888999999999999998 778888899999999999999999999999
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHH
Q 001414 367 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEV 444 (1082)
Q Consensus 367 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~ 444 (1082)
.+++.+|.. +++.-.|..+|.++|+..+.+..+.++.+..++. .+...++.+. .......|..++.+.....++...
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 999999885 4688889999999999999999999999887754 4455556655 666677777777775555555555
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 001414 445 LNNIGVIHFE---KGEFESAHQSFKDALG 470 (1082)
Q Consensus 445 ~~~la~~~~~---~g~~~~A~~~~~~al~ 470 (1082)
++.+...... -|...+.+..+..++.
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555554443 2445666666666654
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=2e-14 Score=152.56 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+ +++|+..+.+++...|.++.++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455555555555566666655555555555555555555555555555 555666666666555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcC
Q 001414 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1082)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1082)
++...|++++|...+.+++... ..+.....+..+|.++...|++++|..+|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555555421 1233446677788888888888888888888887 45566677888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p 407 (1082)
++++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+....|
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 888888888888888788888888888888888888888888777665543
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.5e-14 Score=153.51 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1082)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1082)
..++..+|.+|...|+.. +|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 455666666666666555 677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001414 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|.+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 777777777777777777777777776643 222 44566677777777777777777777777777777777777777
Q ss_pred HHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1082)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1082)
+...|+ +++|+..+.+++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777766 677777777776666666666555566666666665555554443
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.66 E-value=2e-12 Score=147.87 Aligned_cols=298 Identities=15% Similarity=0.155 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
+.++..+.++...|++++|+..+......-++....+-.+|.++...|++++|...|...+..+|++ ...+.++..|..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~g 83 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHh
Confidence 4555566666666677777766666666666666666666666666676666766666666666666 555555555553
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 209 KLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM-EKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1082)
Q Consensus 209 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1082)
... ....-..+|.......|....+...- ... ..|+ .+...+ .++...+.. .-|.+...+-.+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~-~~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~L----- 152 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDF-LEGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPL----- 152 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhh-ccc-CCHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHH-----
Confidence 222 34444555555555555433321111 111 1111 122222 222222222 222223333222
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------CCCCC-ChhhHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-------------NKPHE-FIFPYYGL 348 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~-~~~~~~~l 348 (1082)
|.......-....+...+... ..+|. ..++++.+
T Consensus 153 --------------------------------y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 153 --------------------------------YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred --------------------------------HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 222211111111111111110 01122 24567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1082)
++.|-..|++++|+.++++++...|..++.+...|.+|...|++.+|...++.+..+++.+-......+..+ +.|+.++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887777777766 8899999
Q ss_pred HHHHHHhhcCCC-C---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 428 ALDAFKTKAGEE-V---------PIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 428 Al~~l~~~~~~~-~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
|...+....... . ..+.....|.+|.+.|++..|+..|..+..
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 988888732222 1 123345568889999999999999988776
No 83
>PLN02789 farnesyltranstransferase
Probab=99.65 E-value=7.3e-14 Score=151.19 Aligned_cols=223 Identities=13% Similarity=-0.035 Sum_probs=197.2
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHcCCChHHHHH
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
..+....++-.+-.++...+..++|+..+.+++.++|.+..+|...+.++...| .+.+++.++.+++..+|++..+|..
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 345556666666677888899999999999999999999999999999999998 6899999999999999999999999
Q ss_pred hhhhhhcccch--HHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHH
Q 001414 593 LGDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 670 (1082)
Q Consensus 593 lg~~~~~~g~~--~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 670 (1082)
.++++.+.|.. ..++.++.+++...|. +..+|...|.+ +... |.+++|++++.++++.+|.|..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchh
Confidence 99999988874 7889999999999887 88999999988 7777 8999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCc----hHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhc
Q 001414 671 AANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFY 739 (1082)
Q Consensus 671 a~~~la~~~~~~---~~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~ 739 (1082)
+++..+.++... |.+ +.++.+..+++...| ++..+|..++.++.. .++..+|+..+..++..
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-- 250 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-- 250 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--
Confidence 999999998776 223 478888889999998 789999999999988 45667899999998875
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 001414 740 YNTDAQILLYLARTHYEA 757 (1082)
Q Consensus 740 ~~~~~~~~~~La~~~~~~ 757 (1082)
.+..+.++..|+.+|...
T Consensus 251 ~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 251 DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCCcHHHHHHHHHHHHhh
Confidence 677899999999999863
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=3.7e-13 Score=151.62 Aligned_cols=260 Identities=24% Similarity=0.254 Sum_probs=178.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--- 335 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 335 (1082)
.|.-..+...++..|..+|+|+.|+.++..++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 45555666667777777777777777777777651 1123333444557777777777777777777777532
Q ss_pred --CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 336 --NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 336 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
..+|..+.++.+||.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2445556667777777777777777777777777652 222345666677777777777777777766654
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001414 406 DPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485 (1082)
Q Consensus 406 ~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 485 (1082)
.-+-+ ....+..+.++.++|.+|+..|++.+|..+|++++......
T Consensus 355 ~~~~~------------------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~---------- 400 (508)
T KOG1840|consen 355 YLDAP------------------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL---------- 400 (508)
T ss_pred HHhhc------------------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc----------
Confidence 21000 01112345788999999999999999999999999842100
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCChHHHHHH
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLR 558 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~a~~~ 558 (1082)
.....+.....+.++|..+.+.+.+.+|..+|..++.+ +|+....|.+
T Consensus 401 -------------------------~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 401 -------------------------LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred -------------------------ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 00023455678889999999999999999999887753 3555678888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
|+.+|..+|+++.|+++...++..
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Confidence 888888888888888888887753
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.2e-12 Score=132.31 Aligned_cols=297 Identities=21% Similarity=0.184 Sum_probs=202.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCC-----HHHHHHHH
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC-----AMALNYLA 275 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la 275 (1082)
+..|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|. .+.|+.+-+..+.. |+. ..++..||
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQTLLES-PDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3456667777788888888888888888888888888888888888 88888876655543 332 34666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHH
Q 001414 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF--IFPYYGLGQVQL 353 (1082)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~la~~~~ 353 (1082)
.-|...|-++.|+.+|..+.... .....+...+..+|....+|++|+..-.+.++..+..... ...|..|++.+.
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 77888888888888887776432 3334667777788888888888888877777643222221 233556777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 001414 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 433 (1082)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~ 433 (1082)
...+.+.|+..+.++++.+|++..+-..+|.++...|++..|++.++.+++.+|...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----------------------- 248 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL----------------------- 248 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------------
Confidence 777888888888888888888888888888888888888888888888888777543
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcC
Q 001414 434 TKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 513 (1082)
Q Consensus 434 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 513 (1082)
++++..+..+|...|+.++...++.++....
T Consensus 249 --------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----------------------------------------- 279 (389)
T COG2956 249 --------SEVLEMLYECYAQLGKPAEGLNFLRRAMETN----------------------------------------- 279 (389)
T ss_pred --------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----------------------------------------
Confidence 3556667777888888888888887777631
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH---hcCHHHHHHHHHHHH
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA---RNNLQLSIELVNEAL 580 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~---~g~~~eA~~~~~~al 580 (1082)
..+.+...++.+-....-.+.|..++.+-+..+|.. ...+++...... .|...+.+..++.++
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 123344445555555556677777777777777774 333333333222 223444444444443
No 86
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=1.6e-13 Score=148.48 Aligned_cols=238 Identities=13% Similarity=-0.015 Sum_probs=186.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH--HHH
Q 001414 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL--GKA 216 (1082)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~--~~A 216 (1082)
..+.+++|+..+.+++..+|.+..+|..++.++...| .+.+++.++.+++..+|.+ ..+|...+.++..+|.. ..+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHHHHcCchhhHHH
Confidence 3467888999999999999999999999999999988 6799999999999999998 67888889888888874 678
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1082)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1082)
+.++.++++.+|++..+|...+.++...|. +++++..+.++++.+|.+..+|+..+.++...+...
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~----------- 193 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG----------- 193 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc-----------
Confidence 889999999999999999999999999888 899999999999999999988888777654432100
Q ss_pred ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 001414 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIY 372 (1082)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 372 (1082)
. .....+.++.+..+++. ..|.+..+|..++.++.. .+...+|+..+..++...
T Consensus 194 ----------------~---~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 194 ----------------G---LEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ----------------c---ccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 0 00123466777777776 567778888888888877 455677888888888888
Q ss_pred CCcHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 373 PDNCETLKALGHIYVQLG------------------QIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 373 p~~~~~~~~la~~~~~~g------------------~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
|.++.++..|+.+|.... ..++|..++..+-+.+|--...|.
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 888888888888887632 235566666666555565444444
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=1.2e-12 Score=147.66 Aligned_cols=258 Identities=24% Similarity=0.231 Sum_probs=212.8
Q ss_pred CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 001414 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI--------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAV- 297 (1082)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 297 (1082)
.|.-..+...++..|...|+ ++.|+..++.++.. .|.-...+..+|.+|...+++.+|..+|+.++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~---~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGR---LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred CchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56666777889999999999 99999999999998 5666677777999999999999999999999964
Q ss_pred ----cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 298 ----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1082)
Q Consensus 298 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1082)
+..+|..+.++.+||.+|...|+|.+|..++++++.... ..+.....+..++.++...+++++|+.++.++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 456778888999999999999999999999999997432 34445566888999999999999999999999
Q ss_pred HHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 001414 369 LEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEV 440 (1082)
Q Consensus 369 l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~ 440 (1082)
+++. |.-+..+..||.+|..+|++.+|.++|++++.+.-... ......
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------------~~~~~~ 407 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------------GKKDYG 407 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc------------------------cCcChh
Confidence 9863 23356889999999999999999999999987642110 001112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHH
Q 001414 441 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 520 (1082)
Q Consensus 441 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 520 (1082)
....++++|..+.+.+.+.+|...|.++..... . .....|+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~-~-----------------------------------~g~~~~~~~~ 451 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK-L-----------------------------------CGPDHPDVTY 451 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-H-----------------------------------hCCCCCchHH
Confidence 235678899999999999999999999887320 0 0115677888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001414 521 VLFNLARLLEQIHDTVAASVLYRLILF 547 (1082)
Q Consensus 521 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 547 (1082)
.+.+|+.+|..+|+++.|+++...++.
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999998874
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=3.3e-12 Score=145.18 Aligned_cols=317 Identities=17% Similarity=0.119 Sum_probs=216.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 001414 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1082)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1082)
+|+.+.++..+|.++...|+++.|...+.++....|.+ ....+..+.++...|++++|+..+++++..+|.+ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 78899999999999999999999988888888877754 5567788889999999999999999999999988 4444
Q ss_pred HHHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 201 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~----~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
.. +..+...|.+. .+...+......+|....++..+|.++...|+ +.+|+..+++++...|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 43 55555555444 44444444335667777788888889999998 999999999999999999988899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHH---HHHHHH
Q 001414 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY---GLGQVQ 352 (1082)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~la~~~ 352 (1082)
+++..|++++|+.++.+.+...+..+. ....+..+|.++...|++++|+..|.+++...+. .......+ .+...+
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHH
Confidence 999999999999999888865443222 2345667888999999999999999888642110 11111111 122222
Q ss_pred HHcCCHHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhcCC
Q 001414 353 LKLGDFRSALTN--F-EKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQAFIDLGELLISSD 424 (1082)
Q Consensus 353 ~~~g~~~~A~~~--~-~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~---~~~~~~~la~~~~~~~ 424 (1082)
...|....+..+ + .......|. ........+.++...|+.+.|...+..+....-. ....
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------------ 303 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQP------------ 303 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhh------------
Confidence 333332222222 1 111111111 1222235667777778888888777766543211 1110
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001414 425 TGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472 (1082)
Q Consensus 425 ~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 472 (1082)
.....+....+.+++..|+++.|+..+..++...
T Consensus 304 --------------~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 304 --------------ARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred --------------HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0123455667888999999999999999998743
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.59 E-value=1.8e-12 Score=147.33 Aligned_cols=310 Identities=15% Similarity=0.062 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 157 (1082)
+.+..+..+|.+|...|+.. .|...+.++....|.+ ....+..|.+++..|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567888898888888766 5677777777666644 456778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001414 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1082)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1082)
+|++..++.. +..++..|.+..+...+.+++ ...|.. ...+..+|.++...|+++.|...+++++..+|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999887775 556655555544444444444 344554 5566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH-H
Q 001414 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-Y 308 (1082)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~ 308 (1082)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|...++.++......+..... -
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 9999999999999 9999999999999887443 345679999999999999999999986443211111111 1
Q ss_pred H-HHHHHHHHcCCHHHHHHH--HHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cH
Q 001414 309 Y-NLARSYHSKGDYEKAGLY--YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (1082)
Q Consensus 309 ~-~la~~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (1082)
. .+...+...|....+..+ +..........+.........+.++...|+.+.|...+..+...... ..
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 1 223333444433333332 11111110011222233346788889999999999999887654321 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001414 377 ETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1082)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~kal~~~ 406 (1082)
.+....+.++...|+++.|+..+..++...
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999998754
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=7.6e-12 Score=124.53 Aligned_cols=410 Identities=13% Similarity=0.077 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1082)
.+|..|++++..-.+.+|.+...+..||.+|....+ +..|-.+|++.-.+.|.........+..++..+.+..|+.+
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~---f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE---FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334444444444444444444444444444444433 44444444444444444444444444444444444444444
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1082)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1082)
...+... +.....+...-+.+.+..+++..+..+.++.- ..+......+.|.+.++.|+++.|++-|+.+++
T Consensus 101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-----~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-----SENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-----CCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 4333211 11122334444555566666666666555432 234455677778888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH-HHHHHhcCCHH-HHHHHHHhhcCCCCCHHH
Q 001414 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----DPRDAQAFID-LGELLISSDTG-AALDAFKTKAGEEVPIEV 444 (1082)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~----~p~~~~~~~~-la~~~~~~~~~-~Al~~l~~~~~~~~~~~~ 444 (1082)
...-++-+-+.++.++++.|++..|+.+...+++. .|........ ...+-..|+.. -+.. ...++
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S---------al~eA 243 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS---------ALVEA 243 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH---------HHHHH
Confidence 77777777788888888888888888777776654 2321100000 00000011110 0111 11356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHH
Q 001414 445 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524 (1082)
Q Consensus 445 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 524 (1082)
++..+.++++.|+++.|...+..+--.. ....++.++.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRa-----------------------------------------E~elDPvTLHN 282 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRA-----------------------------------------EEELDPVTLHN 282 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcc-----------------------------------------cccCCchhhhH
Confidence 7777888999999998877664321100 12235667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH------HHHHhhhhhh
Q 001414 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLEL 598 (1082)
Q Consensus 525 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~ 598 (1082)
++..-.. +++.....-+.-.+.++|--.+++-++..+|++..-++-|...+-. +|.... .+..+-.+-.
T Consensus 283 ~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt 357 (459)
T KOG4340|consen 283 QALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALIT 357 (459)
T ss_pred HHHhccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHh
Confidence 7766544 6677777778888888997788999999999998888887766543 333221 2222222222
Q ss_pred cccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001414 599 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 678 (1082)
Q Consensus 599 ~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~ 678 (1082)
..-..++|.+.+...-..- ++.+.-......+.+..+ +......|++.|+..++.. ..++...+++
T Consensus 358 ~qT~pEea~KKL~~La~~l----------~~kLRklAi~vQe~r~~~-dd~a~R~ai~~Yd~~LE~Y---LPVlMa~Aki 423 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGML----------TEKLRKLAIQVQEARHNR-DDEAIRKAVNEYDETLEKY---LPVLMAQAKI 423 (459)
T ss_pred CCCCHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 3344555555554332210 111100000001111000 0123444555555555543 2344566777
Q ss_pred HHhcCCchHHHHHHHHHHHHhc
Q 001414 679 LAEKGQFDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 679 ~~~~~~~~~A~~~~~~~~~~~p 700 (1082)
++...++..+..+|+...+...
T Consensus 424 yW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 424 YWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred hccccccHHHHHHHHHHHhhhc
Confidence 8888888888888888877764
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3e-12 Score=127.38 Aligned_cols=399 Identities=13% Similarity=0.099 Sum_probs=277.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001414 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394 (1082)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 394 (1082)
+....+|..|++++..-.. ..|.+...+..||.||+...+|..|..||+++-...|......+..+..+++.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 4667789999999887776 6677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC-HHHH-HHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001414 395 AQELLRKAAKIDPRD-AQAF-IDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472 (1082)
Q Consensus 395 A~~~l~kal~~~p~~-~~~~-~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 472 (1082)
|+.+...+... |.- .... +.-+..|..+++..+..++++..+ .......++.|++.++.|+++.|++-|+.+++
T Consensus 97 ALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAlq-- 172 (459)
T KOG4340|consen 97 ALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAALQ-- 172 (459)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHHh--
Confidence 99988776543 221 1222 222333488888888888887443 34567788999999999999999999999988
Q ss_pred hhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH----h
Q 001414 473 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF----K 548 (1082)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~ 548 (1082)
....++.+.|+++.++...+++..|+.+..++++ .
T Consensus 173 -----------------------------------------vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 173 -----------------------------------------VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred -----------------------------------------hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 3445678889999999999999999998888765 3
Q ss_pred CCCh-------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc--CCChHHHHHhhhhhhccc
Q 001414 549 YQDY-------------------------VDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLELKND 601 (1082)
Q Consensus 549 ~p~~-------------------------~~a~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 601 (1082)
+|.. ..++...+.++.+.|+++.|.+.+..+--.. .-+|..+.+++.. -..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccC
Confidence 4421 3456667778888899988877665432211 1245566676655 3446
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCC------CHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGA 675 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~~~l 675 (1082)
++......+.-.+.++|- ....+..+--+ |+.. ..|+-|..++ ..+|. +.+.++.+
T Consensus 291 ~p~~g~~KLqFLL~~nPf-P~ETFANlLll-yCKN------------eyf~lAADvL----AEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPF-PPETFANLLLL-YCKN------------EYFDLAADVL----AENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred CccccHHHHHHHHhcCCC-ChHHHHHHHHH-Hhhh------------HHHhHHHHHH----hhCcchhHHHhhHHHHHHH
Confidence 677777777777777664 33444445445 6666 5666665544 34454 23333333
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
-.+..-.-..++|.+-+..+-....+. .....+-......--.......|++.|+..++.| ..++...+++|+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~AkiyW 425 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----LPVLMAQAKIYW 425 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhc
Confidence 222233345566665555444322100 0000011111111111123446777888888875 457788899999
Q ss_pred HhccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 756 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 756 ~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
...++..+.+.|++..+...++..-+.|+|.+
T Consensus 426 ~~~Dy~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 426 NLEDYPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred cccccHHHHHHHHHHHhhhcccceeeeccccc
Confidence 99999999999999999998888888888765
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=9.3e-12 Score=142.45 Aligned_cols=320 Identities=16% Similarity=0.126 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001414 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1082)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1082)
+++....+.++...|++++|+.++..... ...+....+-..|.++..+|++++|...|..++..+|+|...+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46677788888999999999999988766 456667778889999999999999999999999999999999998888
Q ss_pred HHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001414 385 IYVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFE 459 (1082)
Q Consensus 385 ~~~~~g-----~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 459 (1082)
+..... ....-..+|.......|.........-.......+...+..|-........|.++.++-.+|....+..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 873332 567778888888888886543322211111222444444444443333345566777766666443333
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCC------cCCCCc-hHHHHHHHHHHHHhc
Q 001414 460 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH------VELPWN-KVTVLFNLARLLEQI 532 (1082)
Q Consensus 460 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~-~~~~~~~la~~~~~~ 532 (1082)
-...++...+. .+...+.. ...+|. ...+++.+|..|...
T Consensus 161 ~i~~l~~~~~~---------------------------------~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 161 IIESLVEEYVN---------------------------------SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHHH---------------------------------hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 22233322222 11111000 011222 356778899999999
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHH
Q 001414 533 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 612 (1082)
Q Consensus 533 g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 612 (1082)
|++++|+.+++++|...|..++.|+..|.++...|++.+|..+++.+..+++.+-.+-...+..+++.|+.++|...+..
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 001414 613 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 692 (1082)
Q Consensus 613 al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~ 692 (1082)
......+ ...-+..|- +.|.....|.+|.+.|++..|+..|
T Consensus 288 Ftr~~~~-~~~~L~~mQ--------------------------------------c~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 288 FTREDVD-PLSNLNDMQ--------------------------------------CMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred hcCCCCC-cccCHHHHH--------------------------------------HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6554321 111111111 1222334567777778888888877
Q ss_pred HHHHHHh
Q 001414 693 TQVQEAA 699 (1082)
Q Consensus 693 ~~~~~~~ 699 (1082)
..+....
T Consensus 329 ~~v~k~f 335 (517)
T PF12569_consen 329 HAVLKHF 335 (517)
T ss_pred HHHHHHH
Confidence 7777665
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.52 E-value=2.1e-12 Score=136.97 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=136.6
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--
Q 001414 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1082)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1082)
.++..+..++.+|..++..|+++.|+..|++++..+|+++ .+++.+|.+++..|++++|+..|++++...|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999875 57899999999999999999999999999998732
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHH
Q 001414 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 198 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
.+++.+|.++... |+++.|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 2678888888876 666777777777777777665544333222111100 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
......+|..++..|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 011234555666666666666666666665554555566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
.++...|++++|+.+++.+...+|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666776666666666655544
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=3.7e-12 Score=135.09 Aligned_cols=194 Identities=22% Similarity=0.325 Sum_probs=155.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q 001414 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE-- 232 (1082)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 232 (1082)
.++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456688999999999999999999999999999999873 357899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHhc-----cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchH
Q 001414 233 -ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306 (1082)
Q Consensus 233 -a~~~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 306 (1082)
+++.+|.++.... +.+.+..|+..|.+++..+|.+..+...+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~-------------------------------- 155 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK-------------------------------- 155 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH--------------------------------
Confidence 6888888887651 11238888999999888888876443211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 001414 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALG 383 (1082)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la 383 (1082)
..++.... .+ ......+|.+|+..|++.+|+..|..++...|+. +.+++.+|
T Consensus 156 --~~~~~~~~--------------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 156 --KRMDYLRN--------------RL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred --HHHHHHHH--------------HH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 11111111 00 1123578899999999999999999999997764 58999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 384 HIYVQLGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~~p 407 (1082)
.++...|++++|..+++.+....|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999988877665
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=5.8e-13 Score=127.72 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
..+|+++++++|++ ++.+|.++...|++++|+..|.+++..+|.+..+++.+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999999874 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
++ +.+++.+|.|+..+|++++|+..|.+++...|+++..+..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 889999999999999999999999999999999999998888766544
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=8e-09 Score=123.49 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=159.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----
Q 001414 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----- 196 (1082)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----- 196 (1082)
..+|.+..+|..++..+...|++++|+..++..+..+|+.+.+++.+|.++++.+++.++..+ .++...+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 456888999999999999999999999999999999999999999999999999998877766 5555555441
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 197 -------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 197 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
..+++.+|.||-++|+.++|..+|+++++.+|+++.++..+|..+... + .++|+.++.+++..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHH
Confidence 145566666666666666666666666666666666666666666655 4 66666666666544
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChh
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1082)
++..++|..+..+..+++... |.+...++.+ .++..... .....+.
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i----------------~~ki~~~~-~~~~~~~ 224 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRI----------------ERKVLGHR-EFTRLVG 224 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHH----------------HHHHHhhh-ccchhHH
Confidence 333344444444444444221 2222222211 11111100 0111122
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHH
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------------GQIEKAQELLRKAA 403 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~l~kal 403 (1082)
.+.-+-..|...++|++++.+|..+++.+|.|..+...++.+|... ..+..|+..|++.+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 3344446677777788888888888888888888888887777633 23566677777776
Q ss_pred HhCCCC
Q 001414 404 KIDPRD 409 (1082)
Q Consensus 404 ~~~p~~ 409 (1082)
...+.+
T Consensus 305 ~f~~G~ 310 (906)
T PRK14720 305 VFDTGN 310 (906)
T ss_pred eecCCC
Confidence 665544
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.2e-09 Score=114.66 Aligned_cols=298 Identities=20% Similarity=0.189 Sum_probs=187.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 001414 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1082)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1082)
|..-+..|+|.+|+++..+.-. ..+.....+..-+.+-...|+++.|-.++.++.+. .+.+........+.++..
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae---~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAE---HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhh---cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHh
Confidence 4445567889999888887653 33445566777788888999999999999998863 234556678888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001414 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1082)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~ 434 (1082)
.|++..|.....+++...|.++.++.....+|...|++.....++.++-+..--+..-+..+-.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~---------------- 229 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ---------------- 229 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999888877654322221111110
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCC
Q 001414 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (1082)
.++..+-.-....+..+.-..+++..-. .
T Consensus 230 --------~a~~glL~q~~~~~~~~gL~~~W~~~pr-------------------------------------------~ 258 (400)
T COG3071 230 --------QAWEGLLQQARDDNGSEGLKTWWKNQPR-------------------------------------------K 258 (400)
T ss_pred --------HHHHHHHHHHhccccchHHHHHHHhccH-------------------------------------------H
Confidence 0111000000000000000011111000 0
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhh
Q 001414 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 594 (1082)
--.++.+...++.-+..+|+.++|..+...+++..-+.. +..-.-....+++..=++..++.++..|++|..+..+|
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 012345555566666667777777777777666544322 11111233455666666667777777777777777777
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHH
Q 001414 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 662 (1082)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 662 (1082)
.++++.+.|.+|..+|+.+++..|+ .+.+..+|.. |-.. |....|.+.++.++
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~-~~~~------------g~~~~A~~~r~e~L 388 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPS--ASDYAELADA-LDQL------------GEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHH-HHHc------------CChHHHHHHHHHHH
Confidence 7777777777777777777666554 3333446666 6666 66677776666665
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.1e-08 Score=112.85 Aligned_cols=619 Identities=15% Similarity=0.106 Sum_probs=330.4
Q ss_pred HHHHHHHhcCCChhHHHHHH--HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 001414 28 DILDILKAEQAPLDLWLIIA--REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105 (1082)
Q Consensus 28 ~l~~~l~~e~~~~~~~~~~a--~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~ 105 (1082)
=|.+++-.+.|+....-.+- ..|.--|..+.|-+-+..+-+. .+|..+|...++..+++..+ -
T Consensus 714 pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--------------~vW~nmA~McVkT~RLDVAk-V 778 (1416)
T KOG3617|consen 714 PLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--------------SVWDNMASMCVKTRRLDVAK-V 778 (1416)
T ss_pred hHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--------------HHHHHHHHHhhhhccccHHH-H
Confidence 35566666777665432221 2355679999988877765332 25556666555544444210 0
Q ss_pred hHHHHHHH--HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001414 106 KEEHFILA--TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1082)
Q Consensus 106 k~~~~~~A--~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1082)
=-|+...| ...++++. .+|. ..-...|.+....|..++|..+|.+.-..+ .+-..|...|.+++|.+
T Consensus 779 ClGhm~~aRgaRAlR~a~-q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 779 CLGHMKNARGARALRRAQ-QNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred hhhhhhhhhhHHHHHHHH-hCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHH
Confidence 11222222 33445554 3343 334556788889999999999999876544 44567888999999988
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
+-+.--.+ ..-..|+..+.-+...++.+.|+++|+++-. | -......| .+ +..+++.|-+-
T Consensus 848 iAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~--h-afev~rmL-------~e---~p~~~e~Yv~~--- 908 (1416)
T KOG3617|consen 848 IAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGV--H-AFEVFRML-------KE---YPKQIEQYVRR--- 908 (1416)
T ss_pred HHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC--h-HHHHHHHH-------Hh---ChHHHHHHHHh---
Confidence 76543222 2345788899999999999999999998521 1 00111110 11 22333333221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChh
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1082)
..++..|...|.++-..|+.+.|+.+|..+. -|+.+.++.+-+|+.++|...-++. ....
T Consensus 909 -~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~es--------gd~A 968 (1416)
T KOG3617|consen 909 -KRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEES--------GDKA 968 (1416)
T ss_pred -ccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHhc--------ccHH
Confidence 2345667777777777777777777777653 4556666666677777766554332 2344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC--cHHH------------HHHHHHHHHHcC-CHHHHHHHHHHH
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY------PD--NCET------------LKALGHIYVQLG-QIEKAQELLRKA 402 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~--~~~~------------~~~la~~~~~~g-~~~~A~~~l~ka 402 (1082)
+.+.||..|-..|++.+|+..|.++-... .. ..+- +...+..|...| ....|..+|-++
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 56667777777777777776666654321 11 0111 112223333333 444444444443
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001414 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 482 (1082)
Q Consensus 403 l~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 482 (1082)
--+. ..|-.. ...+.-.|++++.+......++.++...+.++....+|++|..++-.+-....-
T Consensus 1049 Gm~~-------kALelA-F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A-------- 1112 (1416)
T KOG3617|consen 1049 GMIG-------KALELA-FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA-------- 1112 (1416)
T ss_pred cchH-------HHHHHH-HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------
Confidence 1110 000001 122233455666666677788999999999999999999999887655431100
Q ss_pred chhhhhhhhhHHhhhhhhhhhhhcc----CCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHH
Q 001414 483 KTYVIDASASMLQFKDMQLFHRFEN----DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 558 (1082)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~ 558 (1082)
+..+ ..++...-+.+.. .............++..+|.++.++|.|..|.+-|.++=. .+.
T Consensus 1113 ----lqlC----~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~ 1176 (1416)
T KOG3617|consen 1113 ----LQLC----KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLS 1176 (1416)
T ss_pred ----HHHH----hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHH
Confidence 0000 0011111111111 1111111223456788899999999999999888877522 222
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhh
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 638 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~ 638 (1082)
-...+++.|+.++-.-+.+. ....++|. ++.-|++.-+|..--+.++.+...+.+ ..++-.|++. |-..+.
T Consensus 1177 AMraLLKSGdt~KI~FFAn~-----sRqkEiYI-mAANyLQtlDWq~~pq~mK~I~tFYTK--gqafd~LanF-Y~~cAq 1247 (1416)
T KOG3617|consen 1177 AMRALLKSGDTQKIRFFANT-----SRQKEIYI-MAANYLQTLDWQDNPQTMKDIETFYTK--GQAFDHLANF-YKSCAQ 1247 (1416)
T ss_pred HHHHHHhcCCcceEEEEeec-----cccceeee-ehhhhhhhcccccChHHHhhhHhhhhc--chhHHHHHHH-HHHHHH
Confidence 33455666666543211111 11222332 333344444555555555555444433 2344556666 554432
Q ss_pred hhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 001414 639 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 718 (1082)
Q Consensus 639 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~ 718 (1082)
.+.. +-.+|++|...++.+. .++.+...-..+...+..+.+.. ....+.+..-.++
T Consensus 1248 iEie----e~q~ydKa~gAl~eA~--------------kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~ 1303 (1416)
T KOG3617|consen 1248 IEIE----ELQTYDKAMGALEEAA--------------KCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIM 1303 (1416)
T ss_pred hhHH----HHhhhhHHhHHHHHHH--------------HHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 2110 1133444333332221 11111111112222222222211 0111222222223
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc
Q 001414 719 FAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 719 ~~~g~~~~Ai~~~~~al~~~~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 779 (1082)
- .+....|.....++.. |.-++ ..++-.|...|....+|..|-..+...-...|+-..
T Consensus 1304 ~--eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~ 1365 (1416)
T KOG3617|consen 1304 K--EDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDL 1365 (1416)
T ss_pred h--hhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccch
Confidence 2 2566677777777765 22222 677888899999999999999999999999987433
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=3.8e-12 Score=122.04 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=117.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 734 (1082)
Q Consensus 655 ~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 734 (1082)
..+|+++++.+|++ +..+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|+++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999986 44689999999999999999999999998 78999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 001414 735 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789 (1082)
Q Consensus 735 l~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~ 789 (1082)
+.. .|.++.+++.+|.++...|++++|+..|.+++.+.|+++..+.+.+.+..
T Consensus 85 l~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 997 78899999999999999999999999999999999999999999999754
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=3.7e-09 Score=111.15 Aligned_cols=296 Identities=18% Similarity=0.104 Sum_probs=179.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1082)
.-|..-+..|+|.+|.....+.-+..+....+++.-|.+.-+.|+++.|-.++.++-+..+++.-.+.+..+.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34555666777888887777777766666777777777777778888888887777777555545667777777777788
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH-H----HHHHcCCHHHH
Q 001414 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA-N----HFFFTGQHFLV 287 (1082)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~----~~~~~g~~~~A 287 (1082)
++.|.....+++...|.++.++.....+|...|+ +.....++.+.-+..--+..-...+- . ++-..++-..+
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888877777777777777777777777777 66666666555544322111111100 0 01111111111
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1082)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1082)
..+....-..+..-...+.....++.-+...|++++|......+++.. -+. . ...-.-...-+++..-++..++
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~-~--L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDP-R--LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCh-h--HHHHHhhcCCCCchHHHHHHHH
Confidence 111111111111112234455555666666666666666666666521 111 1 1111122345566666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHH
Q 001414 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNN 447 (1082)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~ 447 (1082)
.++..|+++..+..||.+|.+.+.|.+|..+|+.++...| ....+..
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------------------------------s~~~~~~ 366 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------------------------------SASDYAE 366 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------------------------------ChhhHHH
Confidence 6666666666666666666666666666666666666554 3456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001414 448 IGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 448 la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
+|.++.+.|+...|...+++++.
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 88888888999988888888874
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=3.9e-11 Score=121.53 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 184 (1082)
+...+++..+.+++..+|+++..|+.+|.+|...|+++.|+..|.+++..+|+++.++..+|.++ ...|+ +.+|..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777654 45565 4677777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001414 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1082)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1082)
+++++..+|++ ..+++.+|.+++..|++++|+.+|+++++.+|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777776 56677777777777777777777777777666543
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=5.1e-11 Score=141.88 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=177.2
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
..|.+..++..++..+...+++++|+.++...+..+|+....|+.+|.++...+++.++..+ .++.+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 78889999999999999999999999999999999999999999999999999887776655 44444433
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHH
Q 001414 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 673 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 673 (1082)
..++ .++.++-..+-..+. +.+++..||.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3334 333444433333333 56789999999 9998 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------
Q 001414 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---------------- 737 (1082)
Q Consensus 674 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~---------------- 737 (1082)
++|..|... ++++|+.++.+++... ...++|..+.+++++.+..
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998753 3334555555555555543
Q ss_pred --hcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 001414 738 --FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789 (1082)
Q Consensus 738 --~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~ 789 (1082)
.....-+.++.-|-..|...++|++++.+|+.+++..|.|..+++.++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1112223444444477888899999999999999999999999999999976
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=1.2e-08 Score=131.33 Aligned_cols=380 Identities=15% Similarity=0.074 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al 121 (1082)
+.-..|..|...|.+.+|+..+..+... ..-..++...++.+...|... .+..++..+-
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~-----------~l~~~l~~lp 401 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELS-----------LLEECLNALP 401 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChH-----------HHHHHHHhCC
Confidence 3445566677778877777766655321 112344455566665555544 3333333320
Q ss_pred -hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 122 -RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 122 -~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.....++......+.+++..|++++|...+..+....+. .......++.++...|++..|...+++++..
T Consensus 402 ~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 402 WEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred HHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 011233445566777888888888888888877654221 1233455677778888888888888888875
Q ss_pred CCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHH
Q 001414 192 HPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE------NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1082)
Q Consensus 192 ~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 261 (1082)
.|... ......+|.++...|+++.|...+.+++..... ...++..++.++...|+ +..|...+.+++
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~al 558 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF---LQAAYETQEKAF 558 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 54431 124456777888888888888888888765332 12345566777777777 777777777776
Q ss_pred HhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 262 EIYP--------YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1082)
Q Consensus 262 ~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1082)
.... ....++..++.+++..|+++.|...+..++..... ......++..++.++...|+++.|...+.++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6421 11233445667777777777777777776643221 1122345556777777777777777777777
Q ss_pred HHhhCCCCCChhhH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 332 VKEINKPHEFIFPY----YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 332 l~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
.............. ......+...|+.+.|..++.......+... ..+..++.++...|++++|...+.+++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54322111111000 0112334456777777776655443221111 124456777777777777777777766
Q ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471 (1082)
Q Consensus 404 ~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 471 (1082)
....... .......++..+|.++...|+.++|...+.+++..
T Consensus 719 ~~~~~~g--------------------------~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 719 ENARSLR--------------------------LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHhC--------------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5421100 01112346677899999999999999999999984
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=8.9e-09 Score=132.46 Aligned_cols=387 Identities=14% Similarity=0.025 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
.+...+..+...|++..|...+..+- ..+.........+......|++..+..++..+-.. ............+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~--~~~~~~~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE--VLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH--HHhcCcchHHHHH
Confidence 33444555555666655554333221 11111223334445555556655554444332110 0011122234455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYPD---------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~ 420 (1082)
.++...|++++|...+..+....+. ...+...++.++...|+++.|...++.++...|......
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 489 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS------- 489 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH-------
Confidence 5556666666666666655443211 122334455566666666666666666655433221000
Q ss_pred hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhh
Q 001414 421 ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 500 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1082)
....+..+|.++...|+++.|...+.+++......
T Consensus 490 --------------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~------------------------- 524 (903)
T PRK04841 490 --------------------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQH------------------------- 524 (903)
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-------------------------
Confidence 11345678888999999999999999988632100
Q ss_pred hhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHhcCHHHH
Q 001414 501 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLS 572 (1082)
Q Consensus 501 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~a~~~la~~~~~~g~~~eA 572 (1082)
........++.++|.++...|+++.|...+.+++.... ....++..+|.++...|++++|
T Consensus 525 ------------g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 525 ------------DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred ------------cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 01111345677889999999999999999999887421 1233456788889999999999
Q ss_pred HHHHHHHHHHcCC-----ChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCc-HHHH-H---HhHhHHHHHHhhhhcc
Q 001414 573 IELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYAT-L---SLGNWNYFAALRNEKR 642 (1082)
Q Consensus 573 ~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d-~~~~-~---~Lg~~~y~~~~~~~~~ 642 (1082)
...+.+++..... ...++..++.++...|++..|...+..+........ ...+ . .+....+...
T Consensus 593 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 666 (903)
T PRK04841 593 EQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------ 666 (903)
T ss_pred HHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------
Confidence 9999998876432 234566788899999999999999999876533211 1100 0 0111102222
Q ss_pred CchHHhhHHHHHHHHHHHHHhhcCCCHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHH
Q 001414 643 APKLEATHLEKAKELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHV 717 (1082)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~----a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~ 717 (1082)
|+.+.|..++.......+.... ....++.++...|++.+|...+.+++...... .......++..+|.+
T Consensus 667 ------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 667 ------GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred ------CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 6677777776555442222111 13456666777777777777777776654211 111233456667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 001414 718 YFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 718 ~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
+...|++.+|...+.+++..+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777764
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1e-09 Score=108.00 Aligned_cols=211 Identities=16% Similarity=0.075 Sum_probs=170.6
Q ss_pred HHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhh
Q 001414 51 FKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPST 130 (1082)
Q Consensus 51 ~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~ 130 (1082)
+...+.++.+++.+..+......-+.+ +.-.++-.+..+.+-.|+.. -|..++++....-|++..+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~---e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGD---EIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRV 88 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCc---hHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhH
Confidence 445566777777666543211110111 22223444444445555555 8889999887777999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
....|..+-..|++++|+++|+..+.-+|.|...+.....+...+|+--+|++.+...+...+++ ..+|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999888888999999999999999999999999 88899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
|+|.+|.-+++.++-+.|.++..+..+|.+++-.|...++..+.++|.++++++|.+..+++.+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999999999999999999999888888999999999999999977776665443
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.32 E-value=2.3e-07 Score=106.84 Aligned_cols=95 Identities=18% Similarity=0.011 Sum_probs=68.1
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 525 LARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 525 la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
+..++.+.++ .-+|+-+++..+...|.++.+.+.+..+|...|-+..|.+.|..+--.+-..-..-+.+-..+.-.|
T Consensus 442 Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g 521 (932)
T KOG2053|consen 442 LIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSG 521 (932)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcc
Confidence 3345555554 4578889999999999999999999999999999999999998653322211122223333445667
Q ss_pred chHHHHHHHHHhhhcCCC
Q 001414 602 DWVKAKETFRAASDATDG 619 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~ 619 (1082)
++.-+...+...+....+
T Consensus 522 ~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDS 539 (932)
T ss_pred cchhHHHHHHHHHHHHhh
Confidence 888888888888876654
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=9.9e-11 Score=118.59 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH-HHcCC--HH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 725 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 725 (1082)
+..++++..+++++..+|++..+|..+|.+|...|+++.|+..|++++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 6788999999999999999999999999999999999999999999999998 7899999999975 67787 59
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Q 001414 726 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 726 ~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 778 (1082)
+|+..++++++. +|.++.+++.||.+++..|++++|+.+|++++.+.|.+.
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999998 788899999999999999999999999999999998764
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=9.9e-10 Score=123.20 Aligned_cols=222 Identities=19% Similarity=0.183 Sum_probs=199.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
|........++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|+++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 445566778999999999999999999875 5667788999999999999999999998 7788999999999
Q ss_pred HH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhh
Q 001414 419 LL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 497 (1082)
Q Consensus 419 ~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1082)
+. ...-+++|.++.+.. ...+...+|......++|.++...|+..+.
T Consensus 466 v~~d~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~--------------------------- 513 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLE--------------------------- 513 (777)
T ss_pred hccChHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhh---------------------------
Confidence 98 777889999888762 233556667777788999999999999988
Q ss_pred hhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 498 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
++|....+||.+|.+..+.+++..|...|..++...|++..+|.+++..|...++-.+|...++
T Consensus 514 ----------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 514 ----------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred ----------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcC
Q 001414 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 578 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
++++-+-.+..+|-++..+..+.|.+++|+..+.+.+.+.
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998854
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=8.2e-10 Score=108.61 Aligned_cols=184 Identities=19% Similarity=0.082 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
..++-.+..+....|+.+.|..+++.... ..|....+
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------------------------------------------~fp~S~RV 88 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRD-------------------------------------------RFPGSKRV 88 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------------------------hCCCChhH
Confidence 44556667777888999999999988766 34778888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
.-..|..+...|++++|+++|...++.+|.+...+-+...+...+|+.-+|++.+...+..++.++++|..++.+|+..|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 679 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 679 (1082)
++.+|.-+++.++-..|- ++..+..++.+ ++..+.. .++.-|.++|.++++++|.+..+++++-.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~-n~l~f~rlae~-~Yt~gg~---------eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPF-NPLYFQRLAEV-LYTQGGA---------ENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHcCCC-cHHHHHHHHHH-HHHHhhH---------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999988887 77777889999 5444332 6789999999999999999998887774433
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.30 E-value=2.4e-10 Score=113.90 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.+...+-+....+|.+..+ ...+..+...|+-+.+..+..++...+|.+...+..+|...+..|+|..|+..++++..+
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 4666666677788988888 889999999999999999999988889999888888999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
.|++ ..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++..|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9999 88899999999999999999999999999999999999999999999999 9999999999988888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 272 NYLANHFFFTGQHFLVEQLTETAL 295 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l 295 (1082)
..|+.+....|++..|..+...-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 888888888888888887765543
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.30 E-value=6.7e-11 Score=122.89 Aligned_cols=255 Identities=19% Similarity=0.111 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNC 376 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~ 376 (1082)
.+|..+|.+|+..++|.+|+++...-+. .++..-....+.-+||.++-..|.|++|+.++.+-+.+.. ...
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 4566677777777777777776544332 1223333444566788888888999999888888776532 134
Q ss_pred HHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHH
Q 001414 377 ETLKALGHIYVQLGQI-------------EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIE 443 (1082)
Q Consensus 377 ~~~~~la~~~~~~g~~-------------~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~ 443 (1082)
.+++++|.+|...|+. +++...|+.+++....+......++. ......
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD-------------------r~aqGR 196 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD-------------------RLAQGR 196 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------HHhhcc
Confidence 6888899998877652 33444444443332222222222221 122235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001414 444 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 523 (1082)
Q Consensus 444 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (1082)
++-++|..|+-+|+|+.|+..-+.-+.+... +........++.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e-------------------------------------fGDrAaeRRA~s 239 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE-------------------------------------FGDRAAERRAHS 239 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHH-------------------------------------hhhHHHHHHhhc
Confidence 6788999999999999999988776653210 001122456888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhC----CC--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC------CChHHHH
Q 001414 524 NLARLLEQIHDTVAASVLYRLILFKY----QD--YVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------KYPNALS 591 (1082)
Q Consensus 524 ~la~~~~~~g~~~~A~~~~~~~l~~~----p~--~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~ 591 (1082)
++|.++.-.|+++.|+++|+..+.+. .. .+...+.||..|.-..++..||.++.+-+.+.. ....+++
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999886533 22 256678899999999999999999998777652 2345888
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhc
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDA 616 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~ 616 (1082)
.+|..+...|...+|+.+.+..+..
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999888877664
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.29 E-value=2.3e-10 Score=114.01 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHH
Q 001414 572 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 651 (1082)
Q Consensus 572 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~ 651 (1082)
+...+-.....+|.+..+ ..+...+...|+-+.+..+..++...+++ +...+..+|.. .+.. |++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~-~~~~------------g~~ 116 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKN-QIRN------------GNF 116 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHH-HHHh------------cch
Confidence 555566666777888888 78888888888888888888777666665 77777667776 6666 889
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001414 652 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 731 (1082)
Q Consensus 652 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~ 731 (1082)
..|+..+.++....|+|+.+++.+|.+|.+.|+++.|..-|.++++..| ..|.+..|+|..|+-.|++..|..++
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-----~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-----CCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 67889999999999999999999998
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 001414 732 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 769 (1082)
Q Consensus 732 ~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 769 (1082)
..+... .+.+..+..+|+.++...|++.+|..+..+
T Consensus 192 l~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 192 LPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888775 455788889999999999999888877543
No 113
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.29 E-value=8.6e-11 Score=122.09 Aligned_cols=276 Identities=20% Similarity=0.181 Sum_probs=167.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~ 421 (1082)
..-|.-+++.|++...+..|+.+++...++. .+|..||.+|..+++|++|+++-..-+. ++.++
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-----------lar~l- 88 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-----------LARLL- 88 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-----------HHHHh-
Confidence 3446778889999999999999998876654 3556677777777777777665433221 11111
Q ss_pred cCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhh
Q 001414 422 SSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501 (1082)
Q Consensus 422 ~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1082)
..........-++|..+-..|.|++|+.+..+-+......
T Consensus 89 --------------gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-------------------------- 128 (639)
T KOG1130|consen 89 --------------GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-------------------------- 128 (639)
T ss_pred --------------cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--------------------------
Confidence 1111122345567888888888888888887766521100
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHhCCC------hHHH
Q 001414 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHD--------------------TVAASVLYRLILFKYQD------YVDA 555 (1082)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~------~~~a 555 (1082)
...-....++|++|.+|...|+ ++.|..+|..-+++... ...+
T Consensus 129 -----------gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa 197 (639)
T KOG1130|consen 129 -----------GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRA 197 (639)
T ss_pred -----------hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcch
Confidence 0111245788888888876653 22344444444432221 1345
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC------hHHHHHhhhhhhcccchHHHHHHHHHhhhcC----C-CCcHHH
Q 001414 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDAT----D-GKDSYA 624 (1082)
Q Consensus 556 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~-~~d~~~ 624 (1082)
+-.||..|+-.|+|+.|+..-+.-+.+.... ..++.++|+++.-.|+++.|+++|+..+.+. . .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 6677777788888888888777666654322 2377788888888888888888888766532 1 123446
Q ss_pred HHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC------CCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 001414 625 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697 (1082)
Q Consensus 625 ~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~ 697 (1082)
.++||+. |... +.+.+|+.++.+-|.+-. ....+++.||..+...|..++|+.+..+.++
T Consensus 278 cYSLgNt-ytll------------~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNT-YTLL------------KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhH-HHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6677777 7666 777777777766554321 1333444555555555555555554444443
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.29 E-value=7.4e-11 Score=112.95 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=110.4
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001414 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1082)
Q Consensus 115 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1082)
..|.+++..+|.+....+.+|.+++..|++++|...|+.++..+|.++.++..+|.+++..|++.+|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
+ +.+++.+|.|+...|+++.|+..|+++++.+|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 78899999999999999999999999999999877644
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=4.7e-10 Score=125.74 Aligned_cols=244 Identities=17% Similarity=0.104 Sum_probs=207.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCC
Q 001414 436 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 515 (1082)
Q Consensus 436 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (1082)
...++....-..++.++...|-...|+..|++.
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl----------------------------------------------- 424 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL----------------------------------------------- 424 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----------------------------------------------
Confidence 345556677788899999999999999999753
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 595 (1082)
..+.....||...|+..+|..+..+-++ .|.++..|..+|.+.....-+++|.++.+.. +..+...+|.
T Consensus 425 ----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~ 493 (777)
T KOG1128|consen 425 ----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLAL 493 (777)
T ss_pred ----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhcc
Confidence 5667788899999999999999999888 6666888888887777666666666666553 3447778888
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 596 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 596 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
.....+++.++..+|+..+.++|- ...+|+.+|.+ +++. +++..|...|..++..+|++..+|+++
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 888899999999999999999987 88899999988 8888 999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
+..|...+.-.+|...++.++..+- .+..+|.|.-.+..+.|.+++|++.|.+.+..-....++.++..+.....
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999999999999999999999874 57889999999999999999999999999986545557777777766555
Q ss_pred H
Q 001414 756 E 756 (1082)
Q Consensus 756 ~ 756 (1082)
.
T Consensus 635 ~ 635 (777)
T KOG1128|consen 635 E 635 (777)
T ss_pred h
Confidence 4
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=9.6e-10 Score=130.91 Aligned_cols=156 Identities=14% Similarity=0.005 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001414 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1082)
Q Consensus 113 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1082)
++.-+....+-.|.++.+++.+|.+....|.+++|...++.++...|++..++..+|.++.+.+++++|+..+++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 34444444566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1082)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1082)
|++ +..++.+|.++..+|++++|..+|++++..+|++..+++.+|.++...|+ .++|...|.+++.....-...+.
T Consensus 151 p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 151 SSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred CCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHHH
Confidence 999 88899999999999999999999999999999999999999999999999 99999999999998766554433
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=1.5e-10 Score=110.78 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=111.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 656 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735 (1082)
Q Consensus 656 ~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al 735 (1082)
..|.+++..+|++..+.+.+|.++...|++.+|...|++++...| .++.+++++|.++..+|++++|+.+|+.++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchh
Q 001414 736 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 736 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 781 (1082)
.. .|.++.+++.+|.++...|++++|+..|++++++.|++....
T Consensus 79 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 AL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 87 677899999999999999999999999999999999886643
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.16 E-value=5.5e-10 Score=104.23 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=100.8
Q ss_pred HHhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001414 120 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1082)
Q Consensus 120 al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1082)
+..+. +..-...+.+|..++..|++++|..+|+.+...+|.+...|+++|.++..+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 67778899999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
+++..|.|++..|+.+.|+..|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998763
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=2.6e-09 Score=127.28 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al 121 (1082)
+.-++-...-..|.+..+..-|-.++. |....+....++..||.+...+|..+ +|..++..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~~ 113 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLD------YVRRYPHTELFQVLVARALEAAHRSD-----------EGLAVWRGIH 113 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHH------HHHhccccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHHH
Confidence 444444555555666555555544422 11111234678889999999999888 9999999999
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001414 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1082)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1082)
.+.|++..++..++.++.+.+++++|+..+++++..+|++..+++.+|.++...|+|++|+.+|++++..+|+. +.+++
T Consensus 114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~ 192 (694)
T PRK15179 114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYV 192 (694)
T ss_pred hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988988 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
.+|.++...|+.++|...|++++.....-...+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999876655443
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.13 E-value=4.1e-05 Score=88.91 Aligned_cols=239 Identities=14% Similarity=0.066 Sum_probs=163.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001414 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1082)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1082)
-.+..+++.+|+....++++..|+...+....|.++++.|++++|..+++..-...+++ ....-.+-.||..+|++++|
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHH
Confidence 35677899999999999999999999999999999999999999998888776666776 67788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 001414 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG-QHFLVEQLTETAL 295 (1082)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l 295 (1082)
..+|++++..+|. ...+..+-..|.+.++ |.+-.+.--+..+..|.++..+.....+++..- ..+.+
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~-------- 164 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENEL-------- 164 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccc--------
Confidence 9999999999998 8888888888888877 655555555566678888765555444443221 11110
Q ss_pred hccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH-HHHh-CC
Q 001414 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK-VLEI-YP 373 (1082)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~-~p 373 (1082)
....+. .-|...+++.+...+ .-....-....-.++...|.+++|...+.. .... .+
T Consensus 165 --------~~~i~l------------~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 165 --------LDPILL------------ALAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred --------ccchhH------------HHHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 000111 123334444443210 111111122223455567778888777733 2232 33
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
.+.......+..+...+++.+-.++..+++...+++
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 344444555667777778888888888887777776
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.4e-10 Score=112.08 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
+-.-|.-++..++|.+|+..|.++|.++|+|+..|..+|.+|.++|.|..|++.++.++.++|.. ...|..+|.+|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHcc
Confidence 33456666666677777777777777777777777777777777777777777777777777766 56667777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
|++.+|+..|+++|.++|++...+..|..+-...+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777777777777777777766655555554444443
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=111.36 Aligned_cols=121 Identities=20% Similarity=0.263 Sum_probs=106.2
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1082)
Q Consensus 89 la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1082)
+|.-.-..|+.. .+.++|.+|+..|++||.++|.++..|..+|.+|.+.|.++.|++.++.++.++|....+|..+
T Consensus 80 ~AE~LK~eGN~~----m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 80 LAESLKNEGNKL----MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 344444444433 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHH
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1082)
|.+|+.+|+|.+|+..|+++|.++|++ ..+...|..+-.+++...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999 676776766666665554
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3.6e-06 Score=95.37 Aligned_cols=327 Identities=17% Similarity=0.154 Sum_probs=162.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~ 426 (1082)
.+.+.+.+|.+++|...|.+.-. +-.|-.+|...|.+++|.++-+.--.+. -...|+..+..+ ..++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHH
Confidence 34444555555555555555432 1233444555555555555443221111 123344444444 555555
Q ss_pred HHHHHHHh---------------------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001414 427 AALDAFKT---------------------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485 (1082)
Q Consensus 427 ~Al~~l~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 485 (1082)
.|+++|++ ......++.+|...|..+...|+.+.|+.+|..|-.-.....+.- ...
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C---~qG 952 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC---IQG 952 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe---ecc
Confidence 55555554 111223446667778888888888888888887754211000000 000
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH------hCCChHHHHHHH
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRL 559 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~a~~~l 559 (1082)
...-..+ +.....+..+.|.+|+.|...|++.+|+.+|.++-. +...+ +.--.|
T Consensus 953 ------------k~~kAa~-------iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L 1012 (1416)
T KOG3617|consen 953 ------------KTDKAAR-------IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRL 1012 (1416)
T ss_pred ------------CchHHHH-------HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 0000000 002234667788888888888888888888877643 21111 111122
Q ss_pred HHHHHHhc--CHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh----------hhcCCCCcHHHHHH
Q 001414 560 AAIAKARN--NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----------SDATDGKDSYATLS 627 (1082)
Q Consensus 560 a~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~~~~d~~~~~~ 627 (1082)
+.+....| +.-.|..+|+.. +.....-..+|.+.|.+.+|++.--+. -.+.+..|+..+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 22222222 223344444432 111112233455666666665542211 12345567766666
Q ss_pred hHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC--
Q 001414 628 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-- 705 (1082)
Q Consensus 628 Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-- 705 (1082)
-++. +... .+|++|+.++-.+-+. .-|.-++...+..-..++-+.+-- ..++.++
T Consensus 1086 cadF-F~~~------------~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~mTp-~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1086 CADF-FENN------------QQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELMTP-TKDDMPNEQ 1142 (1416)
T ss_pred HHHH-HHhH------------HHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhcCc-CcCCCccHH
Confidence 6666 5555 7788887776443322 112222333333333332222211 0011111
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 706 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
....++..+|.+++++|.|..|-+-|.++=.+
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 23457889999999999999999888877543
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=3.1e-08 Score=103.73 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH---HHH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD---AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 591 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 591 (1082)
.+..++..|..+...|+++.|+..|+.++..+|.... +.+.+|.++...++++.|+..+++.++.+|+++. +++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 5566777777777778888888888888887776643 3477777778888888888888888887777654 455
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHH
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 671 (1082)
.+|.++...+.- .|......... .. .......|+..|+.+++..|+..++
T Consensus 111 ~~g~~~~~~~~~-----~~~~~~~~~~~-------------~r------------D~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 111 MRGLTNMALDDS-----ALQGFFGVDRS-------------DR------------DPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHhhhhcchh-----hhhhccCCCcc-------------cc------------CHHHHHHHHHHHHHHHHHCcCChhH
Confidence 555543332210 11111000000 00 1145678889999999999988665
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 750 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~L 750 (1082)
- +|...+..+.... ..--+.+|..|++.|.|..|+.-++.+++.|+..+. .++++.+
T Consensus 161 ~--------------~A~~rl~~l~~~l--------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 161 T--------------DATKRLVFLKDRL--------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred H--------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 4 4444444444432 334468899999999999999999999999887665 8899999
Q ss_pred HHHHHHhccHHHHHHHHHHH
Q 001414 751 ARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 751 a~~~~~~g~~~eA~~~l~~a 770 (1082)
+.+|...|..++|..+....
T Consensus 219 ~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 219 ENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 99999999999998877544
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=1.6e-08 Score=103.60 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhh
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 594 (1082)
.+..++..|..+...|++.+|+..|+.++..+|.. ..+.+.+|.++...|++..|+..++..+...|+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------
Confidence 34555666666666666666666666666655543 455556666666666666666666666666555543
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHH
Q 001414 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 674 (1082)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 674 (1082)
-.++++.+|.+ ++....... ......+...+|+..|+.++...|++.++.
T Consensus 78 --------------------------~~~A~Y~~g~~-~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-- 127 (203)
T PF13525_consen 78 --------------------------ADYALYMLGLS-YYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE-- 127 (203)
T ss_dssp --------------------------HHHHHHHHHHH-HHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH--
T ss_pred --------------------------hhhHHHHHHHH-HHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH--
Confidence 11233333333 322211110 001112678899999999999999987665
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHH
Q 001414 675 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLART 753 (1082)
Q Consensus 675 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~La~~ 753 (1082)
+|...+..+.+.. ..--+.+|..|++.|.|..|+..|+.+++.|+..+. ..++..++.+
T Consensus 128 ------------~A~~~l~~l~~~l--------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 128 ------------EAKKRLAELRNRL--------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 4555555554433 344567899999999999999999999999876665 7899999999
Q ss_pred HHHhccHHHHHH
Q 001414 754 HYEAEQWQDCKK 765 (1082)
Q Consensus 754 ~~~~g~~~eA~~ 765 (1082)
|.+.|....|..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 999999885543
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=3.4e-09 Score=113.63 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=107.1
Q ss_pred HHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHh
Q 001414 417 GELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 495 (1082)
Q Consensus 417 a~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1082)
+.++ ..|++++|+..+... ...+.......++...++++.|.+.++.+..
T Consensus 109 A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------------------------- 159 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQ------------------------- 159 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------
Confidence 3344 555555555555442 3456666667788888999999888887755
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHH
Q 001414 496 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH--DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 573 (1082)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~ 573 (1082)
...+...+....+.+....| .+.+|..+|+++....|..+..++.++.+...+|++++|.
T Consensus 160 ------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 160 ------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp ------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred ------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 23333333333333444444 5888999999988887888888888999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHhhhhhhcccch-HHHHHHHHHhhhcCCC
Q 001414 574 ELVNEALKVNGKYPNALSMLGDLELKNDDW-VKAKETFRAASDATDG 619 (1082)
Q Consensus 574 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~ 619 (1082)
..+.+++..+|++++++.+++.+....|+. +.+.+++.++....|.
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 999999999999999999998888888887 5566677666666666
No 127
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=2.1e-09 Score=115.28 Aligned_cols=259 Identities=15% Similarity=0.117 Sum_probs=167.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
...++..|+|..++..++ ....+|. .......+++++..+|++...+.-....- .|.. .....++..+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l--~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL--QAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC--HHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH--HHHHHHHHHHhCccch
Confidence 345677888888887666 3233332 24566777888888888877665443311 3333 2334444444444455
Q ss_pred HHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001414 214 GKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1082)
+.++..++..+.... .++...+..|.++...|+ +++|+..+.+. .+.........++...++++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666655443221 244455566677777777 77777777643 56677777778888888888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 292 ETALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1082)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1082)
..+.+.. .+..-+....+.+....| .+.+|...|+.+.. ..+..+..+.+++.+++.+|+|++|...+..++
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8776432 232233333333444444 58889999988765 445567778889999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q 001414 370 EIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~l~kal~~~p~~~~~ 412 (1082)
..+|++++++.+++.+....|+. +.+.+++.++...+|.++..
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 88899999999999888888887 66677888877788887643
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=3.8e-08 Score=103.02 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=131.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIR 200 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~ 200 (1082)
..+..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|..|+..|++.++..|++ .+.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356678888999999999999999999999999988554 4888999999999999999999999998887 35567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1082)
+.+|.|+..++.- .|......++. ..+......|+..|+..++..|+...+-...-.+
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl--- 167 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL--- 167 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---
Confidence 7777776554311 11111111110 0111224456666666666666554221110000
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1082)
..+...+ +.--+.+|..|.+.|.|.-|+.-++.++...+..+....+++.++.+|...|..+.
T Consensus 168 --------~~l~~~l---------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 168 --------VFLKDRL---------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred --------HHHHHHH---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 0011111 12334667777777777777777777777777777777777777788888887777
Q ss_pred HHHHHHHH
Q 001414 361 ALTNFEKV 368 (1082)
Q Consensus 361 A~~~~~~~ 368 (1082)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 77665543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=1e-08 Score=110.86 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
|....++++.|..++..|.++.|+..++..+...|++ +..+...+.++...|+..+|.+.+++++.++|.....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7888899999999999999999999999999999998 777888999999999999999999999999999998999999
Q ss_pred HHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001414 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1082)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1082)
..++..|+ +.+|+..++..+..+|+++..|..|+..|...|+..++.. ..+..|+..
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHHHhC
Confidence 99999999 8899999999999999999999999999999998765443 456677888
Q ss_pred CCHHHHHHHHHHHHHhh
Q 001414 319 GDYEKAGLYYMASVKEI 335 (1082)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1082)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998854
No 130
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=9.7e-08 Score=102.01 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=110.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhh-----cCC-----CCCHHHHHHHHH
Q 001414 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTK-----AGE-----EVPIEVLNNIGV 450 (1082)
Q Consensus 382 la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~-----~~~-----~~~~~~~~~la~ 450 (1082)
....|.+..+..-+..-.+.+.....+.+.+.+..+..+ ..|++.+|.+.+... .+. -....+++++|+
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 334445555666666666666666666667777777766 778888887777761 111 113346799999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001414 451 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 530 (1082)
Q Consensus 451 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 530 (1082)
++++.|.|.-+..+|.+++.... ..+.. .+.......-.......++|+.|..|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c------------------~qL~~-------g~~~~~~~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSC------------------SQLRN-------GLKPAKTFTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHH------------------HHHhc-------cCCCCcceehhcccchhhHHhhhHHHH
Confidence 99999999999999999996210 01100 000000000022346789999999999
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 565 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 565 (1082)
..|++-.|.+.|.++...+-.++..|++++.+++.
T Consensus 347 h~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 347 HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=2.5e-08 Score=102.09 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1082)
.+..++..|..++..|+|.+|+..|+.++...|.+ ..+.+.+|.+++..|+|..|+..|++.+...|++ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35567778888888888888888888888877765 5677888888888888888888888888888776 344566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1082)
.+|.+++.+..-. + ....+.....+|+..|+..+...|+++.+-...-.
T Consensus 84 ~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~----- 132 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR----- 132 (203)
T ss_dssp HHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH-----
T ss_pred HHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH-----
Confidence 6666665441100 0 00112233677888888888888876533221110
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
+..+...+ +.--+.+|..|...|.|..|+..++.+++..+..+....++..++.+|..+|....|
T Consensus 133 ------l~~l~~~l---------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 133 ------LAELRNRL---------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ------HHHHHHHH---------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ------HHHHHHHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 01111111 234566788888889999999999998887777676677888888889888888754
Q ss_pred H
Q 001414 362 L 362 (1082)
Q Consensus 362 ~ 362 (1082)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=8.4e-08 Score=103.91 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=123.1
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1082)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1082)
|.. ...+++.+..++..|.++.|+..+...+...|+|+..+...+.+++..++ ..+|.+.+++++.++|+.+.+..
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 555 56788888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 001414 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1082)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1082)
.+|..|+..|++.+|+..+...+.. .|.++..|..++++|..+|+..+|.. ..+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHH
Confidence 8888888888888888888887743 47777888888888888887665533 345566
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001414 353 LKLGDFRSALTNFEKVLEIY 372 (1082)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1082)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 67788888888888887765
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.00 E-value=3.7e-05 Score=84.15 Aligned_cols=433 Identities=12% Similarity=0.044 Sum_probs=252.5
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001414 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1082)
Q Consensus 118 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1082)
++-++.+|.+..+|+.+..-+-.+ -+++....|++.+...|..+.+|...+...+..++|+....+|.++|..--+. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 566789999999999998877666 99999999999999999999999999999999999999999999999865443 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHh---hCCCCHHHHHHHHHHHHHhc---c---HHhHHHHHHHHHHHHHhC
Q 001414 198 AIRLGIGLCRYKLGQLGKARQA----FQRALQ---LDPENVEALVALAVMDLQAN---E---AAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~----~~~al~---~~p~~~~a~~~la~~~~~~~---~---~~~~~~A~~~~~~al~~~ 264 (1082)
-+...+..+....|....+... |+-++. .++.....|...+..+..-. . ..+++.....|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 3334455555555655554433 333333 35566666776665544321 1 123555666777776544
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC----C--
Q 001414 265 PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----K-- 337 (1082)
Q Consensus 265 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~-- 337 (1082)
-.+.. .|.... .|+..+ ..+. ..-.+--....|..|...+++...... .
T Consensus 168 m~nlEkLW~DY~-------~fE~~I---N~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWKDYE-------AFEQEI---NIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHHHHH-------HHHHHH---HHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 33322 111110 011111 0000 000011112234444444444332110 0
Q ss_pred --CCCC-------hhhHHHHHHHHHHc------CC-H-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------
Q 001414 338 --PHEF-------IFPYYGLGQVQLKL------GD-F-RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--------- 391 (1082)
Q Consensus 338 --~~~~-------~~~~~~la~~~~~~------g~-~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------- 391 (1082)
+|.. +..|.++...-... |. . ..-.-.|++++..-+-.+++|+..+..+...++
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~ 303 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVP 303 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccc
Confidence 0000 00121111111110 00 0 122334666666667777777766655555544
Q ss_pred -----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcC---CHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHH
Q 001414 392 -----IEKAQELLRKAAKID-PRDAQAFIDLGELL-ISS---DTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFE 459 (1082)
Q Consensus 392 -----~~~A~~~l~kal~~~-p~~~~~~~~la~~~-~~~---~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~ 459 (1082)
.+++..+|++++..- ..+...++.++..- ... ..+.....+.+ ........-++..+...-.+..-..
T Consensus 304 ~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 304 DAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLK 383 (656)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHH
Confidence 667777887776543 22333444444332 111 24444555555 1222233345555555666666677
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHH
Q 001414 460 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 539 (1082)
Q Consensus 460 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 539 (1082)
.|..+|.++-+.. ..+..+.+...+.. |.-.++..-|.
T Consensus 384 aaR~iF~kaR~~~-----------------------------------------r~~hhVfVa~A~mE-y~cskD~~~Af 421 (656)
T KOG1914|consen 384 AARKIFKKAREDK-----------------------------------------RTRHHVFVAAALME-YYCSKDKETAF 421 (656)
T ss_pred HHHHHHHHHhhcc-----------------------------------------CCcchhhHHHHHHH-HHhcCChhHHH
Confidence 7888888776532 12223333333333 33458888999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--cCC-ChHHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001414 540 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NGK-YPNALSMLGDLELKNDDWVKAKETFRAASDA 616 (1082)
Q Consensus 540 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 616 (1082)
.+|+..+..+++.+..-+.....+...|+-..|..+|++++.. .|+ ...+|..+...-..-|+....++.-++....
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999888888777888888888888899999998876 222 2357777777777788887777776665554
Q ss_pred CC
Q 001414 617 TD 618 (1082)
Q Consensus 617 ~~ 618 (1082)
.|
T Consensus 502 f~ 503 (656)
T KOG1914|consen 502 FP 503 (656)
T ss_pred cc
Confidence 44
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.00 E-value=7.4e-09 Score=115.55 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
+...|..++..|+|+.|+..|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ +.+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
|+++.|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877665444
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=1.2e-08 Score=95.50 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001414 155 LEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1082)
Q Consensus 155 l~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1082)
.... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+.+|.+++.++|+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 4456 6778889999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC
Q 001414 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1082)
++.+|.+++..|+ ...|...|+.++....
T Consensus 106 ~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDN---VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999988763
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=2.9e-05 Score=86.97 Aligned_cols=414 Identities=14% Similarity=0.133 Sum_probs=196.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVPAL 165 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~a~ 165 (1082)
-+++|..|..+++. +...|.....|..++.+.+..|++--|..+|..+-. ...+-...|
T Consensus 456 d~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fy 534 (1636)
T KOG3616|consen 456 DDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFY 534 (1636)
T ss_pred ccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHH
Confidence 46889999988774 567788888899999988888888777777653311 112223445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 001414 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1082)
..+|.+.+.-++|.+|..+|-. .+... -.+| .|..+.++++|+..-+-. -.|.........-..++..|
T Consensus 535 kvra~lail~kkfk~ae~ifle---qn~te-----~aig-my~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 535 KVRAMLAILEKKFKEAEMIFLE---QNATE-----EAIG-MYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred HHHHHHHHHHhhhhHHHHHHHh---cccHH-----HHHH-HHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhcC
Confidence 5555555555666666655532 11111 1111 234444555555433210 11211111111111122222
Q ss_pred cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---------CCCCchHHHHHHHHHHH
Q 001414 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---------HGPTKSHSYYNLARSYH 316 (1082)
Q Consensus 246 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~~~~~~~~~~la~~~~ 316 (1082)
+ -.+| -++...+...+ ....+|.+.|...+|......--.... ..-...+.|-..|.+|.
T Consensus 604 q---d~ka-------~elk~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfe 672 (1636)
T KOG3616|consen 604 Q---DEKA-------AELKESDGDGL-AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFE 672 (1636)
T ss_pred c---hhhh-------hhhccccCccH-HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHH
Confidence 2 1111 11111111111 112334444444443332211000000 00011233444455555
Q ss_pred HcCCHHHHHHHHHHHH------H--hhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 317 SKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 317 ~~g~~~~A~~~~~~al------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
+..++++|+++|.+.- + .+.-+...+..--..|.-+...|+++.|+..|-.+-- +.........
T Consensus 673 ki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~ 744 (1636)
T KOG3616|consen 673 KIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIG 744 (1636)
T ss_pred HhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhh
Confidence 5666666666665431 1 1101111222233456666677777777777654411 1122223334
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 467 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 467 (1082)
...+.+|+.++..+-.... ....|-.++..| ..|+++.|..+|.. .........+|-+.|++..|.++-.+
T Consensus 745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e-------~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTE-------ADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHh-------cchhHHHHHHHhccccHHHHHHHHHH
Confidence 4567777777665543321 122344556666 77777777777765 22334445566677777777766665
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001414 468 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 547 (1082)
Q Consensus 468 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 547 (1082)
... +......|...+.-+...|++.+|.++|-.+-
T Consensus 817 ~~~--------------------------------------------~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 817 CHG--------------------------------------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred hcC--------------------------------------------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 533 11223444455555666676666666553321
Q ss_pred hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC-hHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 548 ~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
.|+. -..+|-+.|.++.-+.+..+ ..|+. .+.+..++.-|...|+...|...|-++
T Consensus 852 -~p~~------aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 852 -EPDK------AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -CchH------HHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 1221 12344455555554444433 22222 224555566666666666666665543
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=3.6e-08 Score=91.86 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 202 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~ 202 (1082)
+..++.+|..++..|++++|+..|..++..+|++ ..+++.+|.+++..|++..|+.+|+.++...|+. .+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 5688999999999999999999999999998885 2567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1082)
+|.++..+|+++.|+..|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
No 138
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=4.6e-08 Score=109.18 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
+...|..++..|+|..|+.+|.+++..+|++ ..+++.+|.++..+|+++.|+..+.+++.++|.++.+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
|+ +..|+..|++++.++|.++.+...++.+..
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99 999999999999999999988887766643
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.7e-08 Score=100.00 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~ 186 (1082)
....+.-++.-+..||+++..|..+|.+|+..|++..|...|.+++++.|+|+..+.++|.+++.+. .-.++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4566666777778888888888888888888888888888888888888888888888888776653 3467778888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1082)
+++..+|.+ ..+++.+|..++..|+|.+|...|+.++...|.+.
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 888888888 67778888888888888888888888888777544
No 140
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=1e-06 Score=105.66 Aligned_cols=230 Identities=15% Similarity=0.188 Sum_probs=190.8
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 001414 16 RVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY 95 (1082)
Q Consensus 16 ~i~~~~l~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~ 95 (1082)
++|+..-|.+++|+..++...|.+.=.|+..-..+...+..+.|.++.++|+..- +|. ...+...+|..+-.+-..
T Consensus 1434 ~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI---N~R-EeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1434 ERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI---NFR-EEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred hcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC---Ccc-hhHHHHHHHHHHHhHHHh
Confidence 3667778999999999999999999999999999999999999999999998652 122 233566666655555555
Q ss_pred hchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1082)
Q Consensus 96 ~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1082)
.|.-+ .-...|++|.+... .-..+..+.-+|...+++++|.++|+.+++...+....|..+|..++++
T Consensus 1510 yG~ee-----------sl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1510 YGTEE-----------SLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred hCcHH-----------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 55333 45667777766542 3456778889999999999999999999998888899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHH
Q 001414 176 GRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1082)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~ 254 (1082)
.+-+.|..++.+|++.-|.. -..+....|.+-++.|+.+.++.+|+-.+...|...+.|..+...-...++ .....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHH
Confidence 99999999999999999983 145566678889999999999999999999999999999999999999888 88888
Q ss_pred HHHHHHHHhC
Q 001414 255 EKMQRAFEIY 264 (1082)
Q Consensus 255 ~~~~~al~~~ 264 (1082)
.+|++++.+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 8999988765
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.9e-07 Score=89.68 Aligned_cols=105 Identities=30% Similarity=0.332 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
+++.+++-.|.+|-.+|-.. -|.--|.+++.+.|.-+.++..+|..+...|+|+.|...|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 45666666666676666655 7777788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1082)
+--+.+.+|..++--|+|.-|..-+.+..+.+|++|
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 888888888888888888888888888888888873
No 142
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=0.00034 Score=75.71 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHH----
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL---- 747 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~---- 747 (1082)
+..|.....++++.+|...+.+.++...- +.+.-..-.+..||++....|+..++.++..-++......+|..+.
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
Confidence 34566666788888888888888876521 1111133456788999999999999999998888765556662222
Q ss_pred HHHHHHHHHhcc--HHHHHHHH
Q 001414 748 LYLARTHYEAEQ--WQDCKKSL 767 (1082)
Q Consensus 748 ~~La~~~~~~g~--~~eA~~~l 767 (1082)
..+-..|...|+ .....+.+
T Consensus 529 si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 529 SILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHhCcchhhHHHHHH
Confidence 234455556666 44444444
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.2e-06 Score=85.57 Aligned_cols=258 Identities=11% Similarity=0.135 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhh
Q 001414 412 AFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 491 (1082)
Q Consensus 412 ~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 491 (1082)
-++.+-..+..|.|..++....+....+...+....+...|...|.+...+.-....
T Consensus 11 ~LF~iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------------------- 67 (299)
T KOG3081|consen 11 ELFNIRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEG----------------------- 67 (299)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccc-----------------------
Confidence 344444555667777777776664444456666666777777777654432222111
Q ss_pred hHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH-HHHHHHhCCC-hHHHHHHHHHHHHHhcCH
Q 001414 492 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL-YRLILFKYQD-YVDAYLRLAAIAKARNNL 569 (1082)
Q Consensus 492 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~-~~~a~~~la~~~~~~g~~ 569 (1082)
. .....+...++..+..-++.+.-+.- ++.+...... +......-+.+++..|++
T Consensus 68 ----------------------~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~ 124 (299)
T KOG3081|consen 68 ----------------------K-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDF 124 (299)
T ss_pred ----------------------c-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCCh
Confidence 0 11223333444544444554444433 3333333322 234455556678888888
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhh
Q 001414 570 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 649 (1082)
Q Consensus 570 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~ 649 (1082)
++|....... .+.++...-..++.++.+.+-|...++++.+.. +...+..|+.. |....... .
T Consensus 125 deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~a-wv~la~gg--------e 187 (299)
T KOG3081|consen 125 DEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQA-WVKLATGG--------E 187 (299)
T ss_pred HHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHH-HHHHhccc--------h
Confidence 8888877762 345666677778888888888888888887765 34556667776 66653332 4
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001414 650 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 729 (1082)
Q Consensus 650 ~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~ 729 (1082)
.+..|.-+|+..-...|.++...++.+.+...+++|++|..+++.++...+ .+|.++.|+..+-...|...++..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHH
Confidence 577888888888887788888888888888888888888888888888776 678888888888888887777776
Q ss_pred HHHHHHHh
Q 001414 730 MYQNCLRK 737 (1082)
Q Consensus 730 ~~~~al~~ 737 (1082)
-+-.-++.
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 66555555
No 144
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.6e-07 Score=90.16 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=107.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
+..++.+|..|-..|-+.-|.--|.+++.+.|.-+.++..+|..+...|+|+.|.+.|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHH
Q 001414 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1082)
+--|++.-|...|.+-.+.+|+++---..|-..-... + ..+|..-+.+-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-d---P~~A~tnL~qR 192 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-D---PKQAKTNLKQR 192 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-C---HHHHHHHHHHH
Confidence 9999999999999999999999875433332222222 2 55555544433
No 145
>PRK15331 chaperone protein SicA; Provisional
Probab=98.80 E-value=7.1e-08 Score=90.55 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=100.0
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001414 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1082)
Q Consensus 120 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1082)
+..+.+......+..|.-++..|++++|..+|..+.-.+|.|+..|+++|.++..+++|++|+..|..+..+++++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4455566677889999999999999999999999999999999999999999999999999999999999999988 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
.+..|.|+..+|+...|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999999998 4553
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.80 E-value=1.2e-07 Score=88.26 Aligned_cols=109 Identities=28% Similarity=0.364 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1082)
..++.+|..+...|++++|+..|.+++...+.++....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5678888889999999999999999887544444446678889999999999999999999999888775 5788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 383 a~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
|.++...|++++|+.++.+++...|++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999999988776543
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=2e-07 Score=93.05 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001414 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1082)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1082)
|..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.. ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4566788999999999999999999999999887653 4688999999999999999999999999999998 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCC
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1082)
.+|.++...|+...+...+..++.. +.+|+.++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666665432 677888888888888876
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=0.00091 Score=75.49 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHH----HHHHHhcC-CchHHHHHHH---------HHHHHh-cCCCCCCchHHHHH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGA----GVVLAEKG-QFDVSKDLFT---------QVQEAA-SGSVFVQMPDVWIN 713 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~l----a~~~~~~~-~~~~A~~~~~---------~~~~~~-p~~~~~~~~~~~~~ 713 (1082)
|+++.|...|-.+++++.-|+...... -.-+.+.| ..++|..+|- ++.+.. |+ ..++++.-
T Consensus 1009 gk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~----~l~dv~tg 1084 (1636)
T KOG3616|consen 1009 GKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED----LLADVLTG 1084 (1636)
T ss_pred cchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh----hhHHHHhh
Confidence 888888888888888877665544322 11112222 4444544442 222222 21 24667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 001414 714 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 793 (1082)
Q Consensus 714 la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~ 793 (1082)
.+.-....|++.+|..++-++ +.++... +.|...+-|..|+.+.+.-+ | ..++.+...+-.
T Consensus 1085 qar~aiee~d~~kae~fllra-----nkp~i~l-----~yf~e~~lw~dalri~kdyl---p------~q~a~iqeeyek 1145 (1636)
T KOG3616|consen 1085 QARGAIEEGDFLKAEGFLLRA-----NKPDIAL-----NYFIEAELWPDALRIAKDYL---P------HQAAAIQEEYEK 1145 (1636)
T ss_pred hhhccccccchhhhhhheeec-----CCCchHH-----HHHHHhccChHHHHHHHhhC---h------hHHHHHHHHHHH
Confidence 777778888888887776544 2233221 23456778888887765332 2 234445555555
Q ss_pred hhhhccCCCHHHHHHH------HHHHHHHHHHHHHH
Q 001414 794 STLQKTRRTADEVRST------VAELENAVRVFSHL 823 (1082)
Q Consensus 794 ~~l~~~~~~~~~~~~a------~~~l~~A~~~f~~l 823 (1082)
+.+++--|.++-.... .+++..|...+-.+
T Consensus 1146 ~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1146 EALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred HHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 6677766666544333 33444555555555
No 149
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.76 E-value=2.6e-06 Score=88.09 Aligned_cols=317 Identities=17% Similarity=0.130 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHhccHHhHHHHHHHHHHHH----HhCCC--CHHH
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA---VMDLQANEAAGIRKGMEKMQRAF----EIYPY--CAMA 270 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la---~~~~~~~~~~~~~~A~~~~~~al----~~~p~--~~~~ 270 (1082)
.+..|.-++...++.+|+..|.+.+..-.+...-+..+| .+....|. +.+++.+--..+ ..+.. ...+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~---y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGR---YKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666654333322233333 23333333 433333222111 11111 1133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC---ChhhH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE---FIFPY 345 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~ 345 (1082)
+..++..+-..-++.+++.+....+......+ .-......++.++...+.|++++++|+.+++......+ ...++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 44445555555555555555555443332222 12244555666666666666666666666653221111 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC----Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYP----DN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~ 415 (1082)
..||..+....++++|+-+..++..+.. ++ .-+++.++..+...|..-.|.++.+.+.++.-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~------- 238 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ------- 238 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH-------
Confidence 5566666666666666666665555421 11 124455555555666666666666555443210
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHh
Q 001414 416 LGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 495 (1082)
Q Consensus 416 la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1082)
..+.+.....+..+|.+|...|+.+.|..-|+.+...-.. ++
T Consensus 239 -------------------~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~g---------------- 280 (518)
T KOG1941|consen 239 -------------------HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS---LG---------------- 280 (518)
T ss_pred -------------------hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh---hh----------------
Confidence 1122233455677899999999999999999998762100 00
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHhCCC------hHHHHHHHHHHHH
Q 001414 496 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT-----VAASVLYRLILFKYQD------YVDAYLRLAAIAK 564 (1082)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~~l~~~p~------~~~a~~~la~~~~ 564 (1082)
..-....++...|.++....-. -.|+++-.++++.... ....+.+++.+|.
T Consensus 281 ------------------drmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 281 ------------------DRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 0112334455555555443333 3377777777664432 2567888999999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 001414 565 ARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 565 ~~g~~~eA~~~~~~al~~ 582 (1082)
..|.-++-...+..+-+.
T Consensus 343 s~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 343 SKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hccchhHHHHHHHHHHHH
Confidence 998877766666654443
No 150
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.76 E-value=3.1e-06 Score=85.36 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH---HHH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 591 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 591 (1082)
.+..+++-|......|++++|+..|+.+...+|.. ..+.+.++.++.+.+++++|+..+++.+.+.|.+++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46678888888888888888888888888887755 567777888888888888888888888888887776 333
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHH
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 671 (1082)
..|.+ ++.......+ .......|+..|+.++...|++.++
T Consensus 113 lkgLs------------------------------------~~~~i~~~~r----Dq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 113 LKGLS------------------------------------YFFQIDDVTR----DQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHH------------------------------------HhccCCcccc----CHHHHHHHHHHHHHHHHHCCCCcch
Confidence 33333 1111111111 1145677888899999999998877
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 750 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~L 750 (1082)
-.. ...+..+.... ..--..+|..|++.|.+..|+.-++.+++.++..+. .+.+..+
T Consensus 153 ~dA--------------~~~i~~~~d~L--------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l 210 (254)
T COG4105 153 PDA--------------KARIVKLNDAL--------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL 210 (254)
T ss_pred hhH--------------HHHHHHHHHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHH
Confidence 632 22222222211 223357789999999999999999999999766544 7889999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCc
Q 001414 751 ARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 751 a~~~~~~g~~~eA~~~l~~al~~~p~~~ 778 (1082)
..+|+..|-.++|.++-.-.-...|+++
T Consensus 211 ~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 211 EEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999999999999988776666677765
No 151
>PRK11906 transcriptional regulator; Provisional
Probab=98.75 E-value=6.5e-07 Score=97.99 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 109 ~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
....|+.+|.+++ .++|..+.++..++.|++.. ....+|....++++..+|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999999998876 23678889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HH-HHHHhccHHhHHHHH
Q 001414 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-AV-MDLQANEAAGIRKGM 254 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-a~-~~~~~~~~~~~~~A~ 254 (1082)
+++.|+..|++++.++|+. +.+++..|..+...|+.+.|...++++++++|....+-... .. +|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 88999999999999999999999999999999766553332 22 444443 67777
Q ss_pred HHHHHHHH
Q 001414 255 EKMQRAFE 262 (1082)
Q Consensus 255 ~~~~~al~ 262 (1082)
..|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77655433
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00047 Score=75.89 Aligned_cols=188 Identities=14% Similarity=0.183 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHcCCChH-HHHHhhhhhhcccchHHHHHH
Q 001414 535 TVAASVLYRLILFKY-QDYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 609 (1082)
Q Consensus 535 ~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~ 609 (1082)
.+++..+|+.++..- ..+...++.++..-...- ..+.....+++++.+...++. +|..+-++-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 667778888877633 233444455544433322 366777888888887655554 566666666666778899999
Q ss_pred HHHhhhcCC-CCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Q 001414 610 FRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 688 (1082)
Q Consensus 610 ~~~al~~~~-~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A 688 (1082)
|.++-+..- .++.++..++-. |+.+ ++..-|..+|+-.++..++.+...+.....+...++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 999887542 246666655544 5666 8999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001414 689 KDLFTQVQEAA-SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 739 (1082)
Q Consensus 689 ~~~~~~~~~~~-p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 739 (1082)
..+|++++... |- .....+|..+-..-..-|+...++++=++....|+
T Consensus 455 R~LFEr~l~s~l~~---~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVLSA---DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccCCh---hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999872 10 13456888887777888999888888888777765
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.73 E-value=1.3e-07 Score=83.73 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1082)
+++.+|.+++..|++++|+..|..++...|.+..+++.+|.++...|++++|+.+|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467778888888888888888888888888887888888888888888888888888888888877 5677788888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001414 210 LGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1082)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877766
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.72 E-value=4.6e-08 Score=80.76 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1082)
++..|..+|.+++..|++++|+..|.+++..+|+++.+++.+|.++...| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666666666666666666666666666666666666666666 46666666666666555
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.8e-07 Score=92.18 Aligned_cols=118 Identities=22% Similarity=0.166 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHH
Q 001414 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
+.-+.-++.-+..+|++ ..-|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++.+.+.....++...|.
T Consensus 139 ~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34444455556666666 55566666666666666666666666666666666666666666665555444556666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1082)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1082)
+++..+|.++.+++.||..++..|+|.+|...++.++..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666644
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.70 E-value=2.4e-07 Score=97.56 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HH
Q 001414 668 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 745 (1082)
Q Consensus 668 ~~~a~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~ 745 (1082)
+....+..|..+ ...|++++|+..|++++...|++.+ .+.+++.+|.+|+..|+++.|+..|+.+++.|+.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345556666665 5679999999999999999996532 3689999999999999999999999999999876544 99
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 779 (1082)
+++.+|.++...|++++|+.+|++++..+|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998864
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=5.1e-07 Score=95.11 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=94.1
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001414 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1082)
Q Consensus 128 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1082)
...++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|++++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 56799999999999999999988 5799999999999999999999999999998876 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1082)
.+|.++..+|+++.|+..|++++...|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8999999999999999999999999998776433
No 158
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=2.2e-07 Score=94.60 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 750 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~L 750 (1082)
.+..|.-+...|+|..|...|...+...|++.+ .+.++|.||.+++.+|+|..|...|..+++.+|.++- |+.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 667788888999999999999999999998764 5789999999999999999999999999999877655 8999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcchh
Q 001414 751 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 751 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 781 (1082)
|.+....|+.++|..+|+++++.+|+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999987654
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.69 E-value=4.3e-08 Score=84.48 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001414 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1082)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~ 218 (1082)
+|+|+.|+.+|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777777774 345566677777777777777777777 5566655 4556666777777777777777
Q ss_pred HHHHH
Q 001414 219 AFQRA 223 (1082)
Q Consensus 219 ~~~~a 223 (1082)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.69 E-value=1.1e-06 Score=96.37 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=115.5
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001414 132 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 196 (1082)
Q Consensus 132 ~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~ 196 (1082)
+.+|...+..+. ...|+.+|.+++ ..+|....++-.+|.|++.. ....+|+....+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 677877777764 678889999999 88999999999999988765 23467888889999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHH
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
+.++..+|.+++..|+++.|...|++++.++|+.+.+|+..|.+....|+ .++|+..+.++++++|....
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhH
Confidence 78889999999999999999999999999999999999999999999998 99999999999999987653
No 161
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.8e-07 Score=98.20 Aligned_cols=123 Identities=21% Similarity=0.171 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hhh-----hHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~-~~~-----~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1082)
..-..|..|++.|+|..|...+++++..-.... ++. ....++.++.+|+.+|+++..+. .|+.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai~ 278 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAIE 278 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHHH
Confidence 345678899999999999999999864311100 000 01122333444444444443333 4444
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1082)
.+++++..+|+|+.+++.+|.+++..|+|+.|+..|+++++..|+|-.+...+..+..+.
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444443333
No 162
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=0.0011 Score=71.85 Aligned_cols=428 Identities=15% Similarity=0.113 Sum_probs=237.4
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHH
Q 001414 41 DLWLIIAREYFKQG--KVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g--~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~ 118 (1082)
...+.+|..+..+| ++..+++.++......++. .-.+..+..||.+.+..- .+++.|...++
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~------~veart~LqLg~lL~~yT----------~N~elAksHLe 71 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF------LVEARTHLQLGALLLRYT----------KNVELAKSHLE 71 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH------HHHHHHHHHHHHHHHHHh----------ccHHHHHHHHH
Confidence 35677899999999 9999999999986654421 123344555666665543 34557888888
Q ss_pred HHHhcC---CCCh----hhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHH
Q 001414 119 KASRID---MHEP----STWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 119 ~al~~~---p~~~----~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
++..+. |+.. .+...++.+|.+.. .+..|...+.+++....+++ ..++.+|.+..-..++..|++.+.
T Consensus 72 kA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 72 KAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 876543 4332 34556788888877 78999999999999876654 456889999999999999999854
Q ss_pred HHHH-hCCCChHHHHHH------HHHHHHHcCCHH---HHHHHHHHHHhhCCCCH---HH----HHHHHHH-HHHhccHH
Q 001414 187 RALQ-VHPSCPGAIRLG------IGLCRYKLGQLG---KARQAFQRALQLDPENV---EA----LVALAVM-DLQANEAA 248 (1082)
Q Consensus 187 ~al~-~~p~~~~~~~~~------lg~~~~~~g~~~---~A~~~~~~al~~~p~~~---~a----~~~la~~-~~~~~~~~ 248 (1082)
-... .+|-+ ..++. .+.++...-+.. .+......+.+....++ +. +..+-.. |...|+..
T Consensus 152 vga~sAd~~~--~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 152 VGAESADHIC--FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred ccccccchhh--hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 3221 12322 22222 233333333333 33333344433322222 21 2222222 33345433
Q ss_pred hHHHHHHHHHHHHHhC-C-----------C-CH-----------HHHHHHH--HHHHHcCCHHHHHHHHHHHHhccCCCC
Q 001414 249 GIRKGMEKMQRAFEIY-P-----------Y-CA-----------MALNYLA--NHFFFTGQHFLVEQLTETALAVTNHGP 302 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~-p-----------~-~~-----------~~~~~la--~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1082)
....+++.++..+..- + . .+ .++..+. ..-...|-+++|.++-++++...+..+
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555544321 1 0 01 1111111 111234556666666666664432222
Q ss_pred Cc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHHHcCCHHHHHHH
Q 001414 303 TK-----------SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-------FIFPYYGLGQVQLKLGDFRSALTN 364 (1082)
Q Consensus 303 ~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~ 364 (1082)
.. ...+-.++.+-.-.|++.+|+.....+..-....|. ....++.+|......|.++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 11 112233445555667777777666666553333333 123345556666666666666666
Q ss_pred HHHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC
Q 001414 365 FEKVLEIYPD-N--CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP 441 (1082)
Q Consensus 365 ~~~~l~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~ 441 (1082)
|..+.+.-.. + ..+..++|.+|.+.|+-+.-.+.++. +.|.+...+..- ...
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq----------------------~l~ 444 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ----------------------RLE 444 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH----------------------HHH
Confidence 6666654321 1 12334556666665554443333332 233321111000 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
..+++..|...+..+++.+|...+.+.++... .-.......-.
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-------------------------------------aed~~rL~a~~ 487 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-------------------------------------AEDLNRLTACS 487 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-------------------------------------hhhHHHHHHHH
Confidence 35677778889999999999999999887421 00011123445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+..++.++...|+..++.....-++..
T Consensus 488 LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccchHHHH
Confidence 667788888888888888877776653
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.68 E-value=7.5e-08 Score=79.49 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 228 (1082)
++..|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677788888888888888888888888888877 677888888888887 68888888888887776
No 164
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.6e-05 Score=85.48 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=96.0
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC--------ChhhHHHHH
Q 001414 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--------FIFPYYGLG 349 (1082)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~la 349 (1082)
|....+...+..-...++... .+.+.+.+..+..++..|++.+|.+.+...--. ..+. .-..+.++|
T Consensus 216 llq~~~Lk~~krevK~vmn~a---~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~--~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIA---QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH--KEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhc---CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc--cccCccccchhhhheeecCcc
Confidence 333344433433333333322 345577788888888888888888877654311 1111 122356788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---------C---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEI---------Y---------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~ 411 (1082)
.++++.|.|.-+..+|.++++. . ....+++++.|..|...|++-.|.++|.++....-.+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 8888888888888888888851 1 124578889999999999999999999999998888899
Q ss_pred HHHHHHHHH
Q 001414 412 AFIDLGELL 420 (1082)
Q Consensus 412 ~~~~la~~~ 420 (1082)
.|+.++.+.
T Consensus 371 lWLRlAEcC 379 (696)
T KOG2471|consen 371 LWLRLAECC 379 (696)
T ss_pred HHHHHHHHH
Confidence 999998866
No 165
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=8.3e-07 Score=85.63 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=80.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCHH
Q 001414 140 AKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLG 214 (1082)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~~ 214 (1082)
..|++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ...+++.++.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677777777777777777777 4566777777777777777777777777766544 2345667777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHH
Q 001414 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1082)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1082)
+|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 777777552 2333345556667777777776 77777766655
No 166
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.66 E-value=5.9e-06 Score=83.40 Aligned_cols=190 Identities=19% Similarity=0.195 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1082)
.+..|+..|...++.|+|.+|...|+.+....|.+ ..+.+.++.++++.++|+.|+..+++-+.+.|+++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46688999999999999999999999999988866 57889999999999999999999999999998873 33444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1082)
..|.+++..= + ....+......|+..|+..+...|+...+-.....+-
T Consensus 113 lkgLs~~~~i---------------~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~--- 160 (254)
T COG4105 113 LKGLSYFFQI---------------D--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV--- 160 (254)
T ss_pred HHHHHHhccC---------------C--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH---
Confidence 5555522110 0 0112223366777777778888877654332221111
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
.+...+ +.--..+|+.|.+.|.+--|+..++.+++..+..+....++..+..+|..+|-.++|
T Consensus 161 --------~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 161 --------KLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred --------HHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 111111 122234556666666666666666666665544444555555666666666666655
Q ss_pred HHHH
Q 001414 362 LTNF 365 (1082)
Q Consensus 362 ~~~~ 365 (1082)
...-
T Consensus 224 ~~~~ 227 (254)
T COG4105 224 KKTA 227 (254)
T ss_pred HHHH
Confidence 5543
No 167
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.66 E-value=8.7e-06 Score=84.36 Aligned_cols=239 Identities=16% Similarity=0.118 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---ALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRL 201 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~~~~~~ 201 (1082)
..+..|.-++...++.+|+....+.+..-.+... .+-.+..+...+|.|.+++.+--..+...-+ ..-..+.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888887777765433322 2333445566777777776654333332211 1234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC--C----HHH
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN-----VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--C----AMA 270 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~ 270 (1082)
+++..+.++-++.+++.+-...+.+.... ..+...++..+...+. ++++++.|+.+++...+ + ..+
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~---fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV---FQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH---HHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 77777777777888877777776653322 2445566666666666 78888888888765432 2 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hCCCCC
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGP-------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKE---INKPHE 340 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~ 340 (1082)
+..|+.+|....++++|.-+..++........ ....+.+.++.++..+|..-.|.++.+++.+. .++.+-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777777777777666654322211 12345677777888888888888888777652 123344
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
.......+|.+|...|+.+.|..-|+.+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 4555667788888888888888888877654
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.66 E-value=6.9e-07 Score=88.84 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 112 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
.+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444433 4566777788888888888888888887776543 3467777777778888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcC
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLG 211 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g 211 (1082)
+++...|.. ...+..+|.++..+|
T Consensus 97 ~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 877777777 555667777776443
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.65 E-value=5.7e-07 Score=89.70 Aligned_cols=108 Identities=24% Similarity=0.463 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001414 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1082)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1082)
+..+.+++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+..|.+++...|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45556788888888888888888888888886433333345678888888999999999999999998888888888888
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 001414 382 LGHIYVQLGQ--------------IEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 382 la~~~~~~g~--------------~~~A~~~l~kal~~~p~~ 409 (1082)
+|.++...|+ +.+|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 8888888777 566777777777777766
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=6.2e-07 Score=86.52 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=91.2
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHH
Q 001414 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1082)
..++...+...+..++...+..+....+.+.+|.+++..|++++|...|..++...+.+.....+.+.++.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45666667777777776665555556778888888888888888888888888743222223456778888888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
+|+..+..+ ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888663 3334456778888889999999999888888764
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.64 E-value=3.2e-06 Score=91.61 Aligned_cols=106 Identities=16% Similarity=0.263 Sum_probs=80.5
Q ss_pred HHHHHHHHHhc-CCchHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-----H
Q 001414 672 ANGAGVVLAEK-GQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 744 (1082)
Q Consensus 672 ~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~ 744 (1082)
+..+|.+|... |++++|+..|+++.+..... .......++..+|.++...|+|++|++.|+++...+...+. .
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34678888888 99999999999999987321 11123557789999999999999999999999986433221 2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
..++..+.|++..|++..|...+.+....+|.-
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456678889999999999999999999999854
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.64 E-value=1.6e-06 Score=100.83 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=116.6
Q ss_pred CCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 001414 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRALQ 190 (1082)
Q Consensus 124 ~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~al~ 190 (1082)
-|.++.+ ++.+|..++..+. +..|+.+|+++++.+|++..++..++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555554 4667888877765 889999999999999999999998888776542 23455566666655
Q ss_pred h--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 191 ~--~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
+ .|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ +++|+..|.+++.++|.++
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5666 57788889999999999999999999999999 57899999999999999 9999999999999999988
Q ss_pred H
Q 001414 269 M 269 (1082)
Q Consensus 269 ~ 269 (1082)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
No 173
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2e-05 Score=78.89 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhH
Q 001414 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1082)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1082)
..+....++.+.|...|.+...+.-.... ......+...++.....-++.+.-+.-....+... ....+....
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~------~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~-~~~sn~i~~ 111 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEG------KATPLQAVRLLAEYLELESNKKSILASLYELVADS-TDGSNLIDL 111 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccc------cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhh-ccchhHHHH
Confidence 44455555555555555554333222111 11122344455555555555555555555444311 222333445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL----- 420 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~----- 420 (1082)
..-|.+|+..|++++|+...... .+.++...-..++.++.+++-|...++++.+++.+. .+..|+..+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhc
Confidence 56678899999999999888763 456777777888899999999999999998876443 333344332
Q ss_pred hcCCHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 421 ISSDTGAALDAFKTKAG-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
..+.+..|.-+|+.... .++.+.+++..+.++..+|+|++|...++.++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 22234555555555333 445555555555555555555555555555555
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.60 E-value=1e-06 Score=102.33 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1082)
.+.+..|+.+|+++++++|+++.++..++.++.... +...+.....+++.. +|..+.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 346779999999999999999999999888876653 345666666666664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001414 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1082)
++++|...|++++.++|+ ...|..+|.++...|++++|+..|.+++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999994 5789999999999999999999999999999998753
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.60 E-value=6.8e-08 Score=83.23 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
++|..|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ +..+|.++...+.+|.+++.+|+|++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999995 466788899999999999999999999 8888888899999999999999999999999
Q ss_pred HHH
Q 001414 186 KRA 188 (1082)
Q Consensus 186 ~~a 188 (1082)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 176
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=1.6e-05 Score=95.81 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1082)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1082)
....|.+.+..+|+....|..+..+++..++.++|..++++++...+... .....|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777775543222 1223344444444445666677777777
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 001414 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-- 408 (1082)
Q Consensus 331 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~-- 408 (1082)
+.+. -+....|..|..+|...+.+++|.++|+.+++...+...+|..+|..+++.++-+.|..++.++++.-|.
T Consensus 1523 Acqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 7752 2334567778888888888888888888888877777788888888888888888888888888888777
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 409 DAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471 (1082)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 471 (1082)
+.......+.+- ..|+.+.+..+|+. ....|....+|.-+...-.+.|+...+..+|++++..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 666666666666 88888888888877 5566667788888888888999999999999999874
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.59 E-value=1.5e-07 Score=76.58 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456666777777777777777777777777777777777777777777777777777766665
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-06 Score=93.70 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRD----N-----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
.-..|..|++.|+|..|...|++++..-+. + ..+++.+|.|+.++++|..|+..+.++|...|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 445788999999999999999998865321 1 2345666667777777777777777777777666
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC
Q 001414 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1082)
.-.++..|.++..+|+++.|+..|++++++.|.|..+...|..+...... .....-..|.+++...
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKL 356 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 55666677777777777777777777777777766666666555544433 1233345555555443
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=6.8e-07 Score=78.98 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1082)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|+++.|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46778888888888888888888888888887 57788888888888888888888888888888888888888888888
Q ss_pred hccHHhHHHHHHHHHHHHHhCC
Q 001414 244 ANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 244 ~~~~~~~~~A~~~~~~al~~~p 265 (1082)
.|+ +..|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 887 8888888888877766
No 180
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.58 E-value=0.00016 Score=76.38 Aligned_cols=66 Identities=42% Similarity=0.656 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1082)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~ 408 (1082)
..+..++..+...+.+..|+..+..++...|.....+..++..+...+.+..+...+.+++...|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 334444444444444444444444444444443344444444444334444455455444444443
No 181
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.58 E-value=0.0011 Score=74.86 Aligned_cols=184 Identities=9% Similarity=-0.049 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
...|..........|+++...-.|++++-. -......
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------------------------------------cA~Y~ef 333 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-------------------------------------------CALYDEF 333 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------------------------------------HhhhHHH
Confidence 355666677777888888888888887652 1235678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 600 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 600 (1082)
|...++.....|+..-|...+..+.+.+ |..+...+.-+.+-...|++..|...++......|+...+-..........
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 8888888888888888887777777654 566777777777788888888898888888887788877777777777777
Q ss_pred cchHHHHH---HHHHhhhcCCCCcH--HHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 601 DDWVKAKE---TFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 601 g~~~~A~~---~~~~al~~~~~~d~--~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
|+.+.+.. .+.....-...... ..++..+...|... ++.+.|...+.+++...|.+-..+..+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 87777763 22222221111111 11122222212222 667777777778887777776666555
Q ss_pred HHHHH
Q 001414 676 GVVLA 680 (1082)
Q Consensus 676 a~~~~ 680 (1082)
..+..
T Consensus 482 ~~~~~ 486 (577)
T KOG1258|consen 482 IRFEL 486 (577)
T ss_pred HHHHH
Confidence 44443
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.57 E-value=3.7e-06 Score=91.14 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHhhcC--C----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHc
Q 001414 649 THLEKAKELYTRVIVQHT--S----NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQ 721 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p--~----~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~ 721 (1082)
+++++|...|.++....- + -..++...+.++... ++.+|+.+|+++++..-.. .+..-..++..+|.+|...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 555555555555543321 1 112233344454444 8888899998888876221 1123456888999999998
Q ss_pred -CCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhh
Q 001414 722 -GNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTL 796 (1082)
Q Consensus 722 -g~~~~Ai~~~~~al~~~~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l 796 (1082)
|++++|+++|++++..|..... ..++..+|.++...|+|.+|+..|+++....-+++...+++.-.+-..+.
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l--- 204 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL--- 204 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH---
Confidence 9999999999999998854444 56778999999999999999999999999877777666665443222222
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 797 QKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 797 ~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
+.-+.++.-.|.+.|+......
T Consensus 205 ---------~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 205 ---------CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp ---------HHHHTT-HHHHHHHHHHHGTTS
T ss_pred ---------HHHHcCCHHHHHHHHHHHHhhC
Confidence 2233445677888888876543
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.57 E-value=1.5e-06 Score=88.62 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
.+..|.-++..|+|..|...|...++..+.++..+.++||||.+++.+|+|+.|...|..+++.++.+|..+.+++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55666667777777788888888777777777778888888888888888888888888888877777777788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1082)
++..+|+.++|..+|+++++.+|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888877665443
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.55 E-value=2.8e-07 Score=74.94 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
+.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788889999999999999999999999999999999999999999999999999999988864
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=0.00016 Score=76.28 Aligned_cols=224 Identities=29% Similarity=0.368 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001414 142 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1082)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1082)
+.+..+...+...+...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+.+..++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 55566666666666555542 55555566666666666666666666655 33433 455556666666666666666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHHhccHHhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 218 QAFQRALQLDPENVEALVALAV-MDLQANEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~-~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
..+..++...+.........+. ++...++ +..|+..+.+++...| .........+..+...+++..+...+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGD---YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 6666666655554333333333 4555555 5555555555555444 2333333344444445555555555555
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
++...... ....+..++..+...+.+..|+..+..++. ..+.....+..++..+...+.+..+...+.+++...|
T Consensus 193 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 193 ALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55332111 234455555555555555555555555554 2222233344444444444445555555555555544
Q ss_pred C
Q 001414 374 D 374 (1082)
Q Consensus 374 ~ 374 (1082)
.
T Consensus 268 ~ 268 (291)
T COG0457 268 D 268 (291)
T ss_pred c
Confidence 3
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.54 E-value=2e-06 Score=85.43 Aligned_cols=106 Identities=19% Similarity=0.112 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCC---hh
Q 001414 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PS 129 (1082)
Q Consensus 53 ~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~---~~ 129 (1082)
.+.+..+...|...+... .......++..+|.++...|+.+ +|+..|.+++.+.|+. +.
T Consensus 12 ~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~~~~ 73 (168)
T CHL00033 12 DKTFTIVADILLRILPTT-------SGEKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYDRSY 73 (168)
T ss_pred ccccccchhhhhHhccCC-------chhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchhhHH
Confidence 344555555555443221 12246677888899988888777 9999999999887653 45
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
+|..+|.++...|++++|+..|.+++..+|.+...+..+|.++...|
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999888333
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.52 E-value=4.1e-08 Score=100.23 Aligned_cols=243 Identities=13% Similarity=0.048 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
+-..|..|+.+|.|++|+.+|.+.+..+|.|+..+..+|.+|++.+.|..|...+..++.++... ..+|...|.+...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 44578889999999999999999999999888888899999999999999988888888888766 66788888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1082)
|+..+|...++.+|.+.|++.+..-.++.+..-... .-+.+.-|....+...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~-----------~I~~KsT~G~~~A~Q~----------------- 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRER-----------KIATKSTPGFTPARQG----------------- 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh-----------hHHhhcCCCCCccccc-----------------
Confidence 999999999999999988876655444433221100 0011111211111100
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1082)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1082)
..+++ ..-.-|..+...|.+..++..|..-+... ..+...... +..|.+..+++.++.-..+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000 01123555666777777777776655421 222222222 5667777788888888877777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
..|.........+.+-.-.|...++...++.++.+.|.+......+.
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s 342 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET 342 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence 76665555555555555667778888888888888887655444443
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=3.7e-06 Score=77.44 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1082)
.+..++..|...+..|+|..|+..|+.+....|.. ..+.+.+|.+++..++|..|+..+++.++++|.+ .+.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678889999999999999999999999988865 6788999999999999999999999999999987 355778
Q ss_pred HHHHHHHHcCC
Q 001414 202 GIGLCRYKLGQ 212 (1082)
Q Consensus 202 ~lg~~~~~~g~ 212 (1082)
.+|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888887765
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.48 E-value=1.6e-06 Score=81.56 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=97.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001414 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1082)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1082)
+.++.....+..|.-++..|++++|..+|+-+...+|.+ +..++++|.|+..+++|++|+..|..+..++++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 445557788999999999999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 237 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
.|.+++..|+ ...|+..|..++. .|.+.
T Consensus 111 agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 9999999999 9999999999888 45544
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=5.3e-06 Score=91.90 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1082)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 221 (1082)
++++.|+.+|++..+.+|. +...+|.++...++-.+|+.++.+++..+|.+ ...+...+..+...++++.|+.+.+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4445555555544444432 23334444444444445555555555444444 4444444444455555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHH
Q 001414 222 RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 222 ~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
+++...|.+...|..|+.+|...|+ ++.|+..++
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLN 292 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGD---FENALLALN 292 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 5555555555555555555555544 444444444
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.39 E-value=0.0011 Score=69.94 Aligned_cols=261 Identities=19% Similarity=0.132 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
-+++.-++..+..|+++.|.+-|+-++. +|.. ...+-++-.-....|.++-|..+-..+....|.. +..+...-...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r 198 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHH
Confidence 3444456666666777777777766653 2211 1112222222234566777777777777666666 44444444455
Q ss_pred HHcCCHHHHHHHHHHHHhh---CCCCH---HH--HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 208 YKLGQLGKARQAFQRALQL---DPENV---EA--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~---~p~~~---~a--~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
+..|+++.|+.+.+..... .++-. .+ +...+...+. .+ ...|...-..+.++.|+....-..-+..++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-ad---p~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-AD---PASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CC---hHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 5667777777666654432 22111 01 1111111111 12 455566666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHH
Q 001414 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1082)
..|+..++-.+++.+-+..++. .++..|....--+.++.-++++-......|++....+..+..-+.-|++.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6666666666666655432211 12223333222233344444443322344555555555555555556665
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 404 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~kal~ 404 (1082)
.|...-+.+....|. ..++..++.+-... |+-.++...+-+++.
T Consensus 347 ~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555555555543 23344444444333 555555555555554
No 192
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.38 E-value=0.016 Score=70.30 Aligned_cols=470 Identities=14% Similarity=0.089 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHHHcCCH
Q 001414 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (1082)
+..|+.+++-+++..+- ...+...+|.+++ ...+++.|+..+.+++.....+. ....+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 55677777777643221 2356666777766 67788888888888765544311 1234456678888888777
Q ss_pred HHHHHHHHHHHHhhCCCCCChhh-HHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 001414 322 EKAGLYYMASVKEINKPHEFIFP-YYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1082)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1082)
. |...+.+.+......+..... .+.+ ...+...+++..|+..++.+.... +.++. +....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 888888888754432222221 1222 233333478888888888887654 33433 223345566666777
Q ss_pred HHHHHHHHHHHHhC------CCC----HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001414 393 EKAQELLRKAAKID------PRD----AQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAH 462 (1082)
Q Consensus 393 ~~A~~~l~kal~~~------p~~----~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 462 (1082)
+.+++.+..+.... |.. ..+|..+-. ..++...|++..+.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~------------------------------l~~~l~~~~~~~~~ 245 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD------------------------------LCCSLQQGDVKNSK 245 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH------------------------------HHHHHHcCCHHHHH
Confidence 77777777664321 111 111211111 22344556655555
Q ss_pred HHHHHHHh---cch----hhhhcccccchhhhhhhhhHHhhhhhhhhhhhccC-CCCcC-CCCch--HHHHHHHHHHHHh
Q 001414 463 QSFKDALG---DGI----WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVE-LPWNK--VTVLFNLARLLEQ 531 (1082)
Q Consensus 463 ~~~~~al~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~--~~~~~~la~~~~~ 531 (1082)
..++..-. ... |....++.... +....... . ... ...+. .+..+ .-+++.-|.+...
T Consensus 246 ~~L~~lq~~~~~~~~~~~w~~~~~d~~i~--l~~~~~~~---~-------~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~ 313 (608)
T PF10345_consen 246 QKLKQLQQFLDEIKKSPSWPSWDEDGSIP--LNIGEGSS---N-------SGGTPLVFSWLPKEELYALVYFLSGLHNLY 313 (608)
T ss_pred HHHHHHHHHHHHhhcCccCCCcCCCeeEE--eecccccc---c-------CCCceeEEeecCHHHHHHHHHHHHHHHHhh
Confidence 55443322 110 11100000000 00000000 0 000 00000 11112 2233344555666
Q ss_pred cCChHHHHHHHHHHHHhC-------C---Ch----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc--
Q 001414 532 IHDTVAASVLYRLILFKY-------Q---DY----------------VDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 583 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~~~-------p---~~----------------~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-- 583 (1082)
.+..+.|.+++.+++..- | .. ..+.+..+.+.+-.+++..|...+..+....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 677778888888876511 1 00 1234556666788899999999988877653
Q ss_pred -CC------ChHHHHHhhhhhhcccchHHHHHHHH--------HhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHh
Q 001414 584 -GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 648 (1082)
Q Consensus 584 -p~------~~~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~ 648 (1082)
|. .+..++..|..+...|+.+.|...|. .+....+..+.+.+.. .|. +.-.. .+..
T Consensus 394 ~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~-LNl-~~I~~-~~~~------ 464 (608)
T PF10345_consen 394 SPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA-LNL-AIILQ-YESS------ 464 (608)
T ss_pred CccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH-HHH-HHHhH-hhcc------
Confidence 22 36688999999999999999999998 4444444444443332 222 22111 1110
Q ss_pred hHHH--HHHHHHHHH---HhhcCC-CHHHHHHH-HHHHH--hcCCchHHHHHHHHHHHHh-cCC-CCCCchHHHHHHHHH
Q 001414 649 THLE--KAKELYTRV---IVQHTS-NLYAANGA-GVVLA--EKGQFDVSKDLFTQVQEAA-SGS-VFVQMPDVWINLAHV 717 (1082)
Q Consensus 649 ~~~~--~A~~~~~~~---l~~~p~-~~~a~~~l-a~~~~--~~~~~~~A~~~~~~~~~~~-p~~-~~~~~~~~~~~la~~ 717 (1082)
.... ++..++.++ ....|+ +...++.+ -.++. ..-...++...+...+... ... ...-...++..+++.
T Consensus 465 ~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~ 544 (608)
T PF10345_consen 465 RDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHR 544 (608)
T ss_pred cchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 0011 133333322 222332 21222222 11221 1223447777777766655 211 111123355667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCC--HHHHH-----HHHHHHHHhccHHHHHHHHHHHHh
Q 001414 718 YFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 772 (1082)
Q Consensus 718 ~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~-----~La~~~~~~g~~~eA~~~l~~al~ 772 (1082)
++ .|+..+.......+.......++ ..+|. .++..+...|+.++|.....+.-.
T Consensus 545 lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 545 LF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 77 78888888887777765433322 22332 455567778999999888776543
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=9.5e-06 Score=74.80 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHH
Q 001414 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLK 380 (1082)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~ 380 (1082)
.+..++.-|...+..|+|..|+..|+.+....+-++-...+.+.||.+|+..++++.|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3466778888888888888888888888887777777778888888888888888888888888888887764 5778
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 001414 381 ALGHIYVQLGQ---------------IEKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 381 ~la~~~~~~g~---------------~~~A~~~l~kal~~~p~~~~~ 412 (1082)
..|.++..... ...|...|+.++...|++..+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 88888887765 778999999999999987644
No 194
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.013 Score=69.21 Aligned_cols=670 Identities=15% Similarity=0.102 Sum_probs=328.5
Q ss_pred CCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001414 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1082)
Q Consensus 23 ~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1082)
|+++.++...+.++..++--.-++...+..++.++++...+-.++.... ++...+-+.|-.
T Consensus 525 PD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~--------Pd~g~LQTrLLE----------- 585 (1666)
T KOG0985|consen 525 PDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNS--------PDEGHLQTRLLE----------- 585 (1666)
T ss_pred hhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCC--------hhhhhHHHHHHH-----------
Confidence 5566666666655433444455666666666666666666666654421 111111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHc
Q 001414 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-------DNVPALLGQACVEFNR 175 (1082)
Q Consensus 103 ~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~la~~~~~~ 175 (1082)
-+..-|.+..+..+.-+.-...-|-..|.++-+.|-+.+|++.|.....+-. -++..+ ..++..
T Consensus 586 -----~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL----v~yFg~ 656 (1666)
T KOG0985|consen 586 -----MNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL----VNYFGS 656 (1666)
T ss_pred -----HHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH----HHHHHh
Confidence 1111233333333333332222366677777777777777776665433211 111111 123444
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHH
Q 001414 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1082)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~ 255 (1082)
-.+..++.+++.++..+-...-.+...++.-|..+=-.+.-++.|+.. ... +++-
T Consensus 657 lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~f----ks~---------------------eGL~ 711 (1666)
T KOG0985|consen 657 LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESF----KSY---------------------EGLY 711 (1666)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhh----ccc---------------------hhHH
Confidence 556677777776666543322333334444343333233333333321 111 2222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------h---ccCCCCC-----chHHHHHHHHHHH
Q 001414 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL-----------A---VTNHGPT-----KSHSYYNLARSYH 316 (1082)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-----------~---~~~~~~~-----~~~~~~~la~~~~ 316 (1082)
+|--.+-....+|.+++.........|++.+.+.+.+..- . ..+.-|. .......+ ..|.
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdl-vlYL 790 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDL-VLYL 790 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHH-HHHH
Confidence 2222333345567777777777788888877776654321 0 1111110 11111122 2233
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCCChhhH--------H---------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 317 SKGDYEKAGLYYMASVKEINKPHEFIFPY--------Y---------------GLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~---------------~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
..++..+=++.|-+-+.- ...|..+-++ + .|..-.-+.++..--..+++..+....
T Consensus 791 yrnn~~kyIE~yVQkvNp-s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 791 YRNNLQKYIEIYVQKVNP-SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHhhHHHHHHHHHhhcCC-cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 344444445544333210 0001000000 0 011112244455556667777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHhCCC--------------------CHHHHHHHHHHH-hc
Q 001414 374 DNCETLKALGHIYVQLGQIEKA----------QELLRKAAKIDPR--------------------DAQAFIDLGELL-IS 422 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A----------~~~l~kal~~~p~--------------------~~~~~~~la~~~-~~ 422 (1082)
.++.++..||.+|...++-.+- ...=+-+-+.+|. .-..+..+++.+ ..
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R 949 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVER 949 (1666)
T ss_pred cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhc
Confidence 7889999999999877643221 1111111122331 112333444444 44
Q ss_pred CCHHHHHHHHHh---------------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccch--h
Q 001414 423 SDTGAALDAFKT---------------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT--Y 485 (1082)
Q Consensus 423 ~~~~~Al~~l~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~ 485 (1082)
.+.+-=-+.+.. ......+|+-......+++..+-..+-++++++.+-.+. ..++.... .
T Consensus 950 ~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S---~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VFSENRNLQNL 1026 (1666)
T ss_pred cChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc---ccccchhhhhh
Confidence 443322222211 233445566666666777888888899999988764321 11111100 0
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH-------------H-H----
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI-------------L-F---- 547 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------l-~---- 547 (1082)
.+..+...-..+.+++...+.... .| .+|.+....+-+++|..+|++. + .
T Consensus 1027 LiLtAikad~trVm~YI~rLdnyD-----a~-------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA 1094 (1666)
T KOG0985|consen 1027 LILTAIKADRTRVMEYINRLDNYD-----AP-------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRA 1094 (1666)
T ss_pred HHHHHhhcChHHHHHHHHHhccCC-----ch-------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHH
Confidence 000011111123334444443311 01 1222233333344444444331 1 0
Q ss_pred ----hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHH
Q 001414 548 ----KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 623 (1082)
Q Consensus 548 ----~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~ 623 (1082)
..-+.+..|..+|......|...+|++.|-+ .++|..+.....+..+.|.|++-+.++..+-+....+...
T Consensus 1095 ~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1095 YEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred HHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 1123477899999999999999999988865 4677788888888888999999988888777654332222
Q ss_pred HHHHhHhHHHHHHhhh---------hcc-------CchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchH
Q 001414 624 ATLSLGNWNYFAALRN---------EKR-------APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 687 (1082)
Q Consensus 624 ~~~~Lg~~~y~~~~~~---------~~~-------~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~ 687 (1082)
+-+.++ |....+. .+. +.-.+.+.|+.|.-+|. ++.-+..|+..+...|.|..
T Consensus 1170 ~eLi~A---yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1170 SELIFA---YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHHH---HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHH
Confidence 221111 2222000 000 00002344555544442 22334455666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 001414 688 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767 (1082)
Q Consensus 688 A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l 767 (1082)
|.+..+++ ++..+|-..+.++...+.|.-|.-.=-. ---.++-+--|...|...|-+++-+..+
T Consensus 1239 AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiCGL~------iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1239 AVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQICGLN------IIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhcCce------EEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 66655554 2344555555555555554333211000 0111444556777788889999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHh
Q 001414 768 LRAIHLAPSNYTLRFDAGVAMQKFSAS 794 (1082)
Q Consensus 768 ~~al~~~p~~~~~~~nla~~~~~~~~~ 794 (1082)
+.++-+.-.+....--||..|.++-.+
T Consensus 1303 Ea~LGLERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1303 EAGLGLERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HhhhchhHHHHHHHHHHHHHHHhcCHH
Confidence 888888877777777788888776553
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.38 E-value=0.0014 Score=69.36 Aligned_cols=291 Identities=17% Similarity=0.113 Sum_probs=166.1
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhH
Q 001414 172 EFNRGRYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1082)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~-p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1082)
..-.|+-..|.+.-.+.-++- .+..+.+++.-+..-.-.|+++.|..-|+.++. +|+.. +..|-.+|+.....+..
T Consensus 94 AagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr~Gar 170 (531)
T COG3898 94 AAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHhcccH
Confidence 334444445544444443222 222344444445555555555555555555442 22211 11222222222222225
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC---chHHHHHHHHHH-HHcCCHHHHHH
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSY-HSKGDYEKAGL 326 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~la~~~-~~~g~~~~A~~ 326 (1082)
+.|..+-..+...-|.-+.++.......+..|+++.|+++.+......-..+. ...+-..-+... .-..+...|..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 55555555555555555555555555555666666666665554432211111 111111212211 12235667777
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 001414 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA-QELLRKAAKI 405 (1082)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~l~kal~~ 405 (1082)
.-..+++ ..|+++.+-..-+..++..|+..++-.+++.+.+..|. +.++ +..++.+.|+.... ++-..++..+
T Consensus 251 ~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 7777776 67888888888888899999999999999988887764 3322 22334455554322 2333444556
Q ss_pred CCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 001414 406 DPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGD 471 (1082)
Q Consensus 406 ~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 471 (1082)
.|++....+.++..- ..|++..|..-.+......+...++..++.+-... |+-.++..++-+++..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 788888888888765 88888888777777666666667777788876554 9999999999998874
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.34 E-value=1.5e-06 Score=71.45 Aligned_cols=65 Identities=34% Similarity=0.565 Sum_probs=34.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
+..|+|++|+..|++++..+|++ ..+++.+|.|++..|++++|...+.+++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34455555555555555555555 445555555555555555555555555555555544444443
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.33 E-value=8.8e-06 Score=74.03 Aligned_cols=99 Identities=26% Similarity=0.261 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1082)
.+++.+|.++-..|+.++|+.+|++++......+....+++.+|.++...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888888888888888888743334444667888888888889999998888888888887 67777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001414 383 GHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 383 a~~~~~~g~~~~A~~~l~kal~ 404 (1082)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.32 E-value=0.013 Score=66.46 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 001414 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~ 222 (1082)
.+.+...|...|...|-....|...|..-++.|....+..+|++++..-|-+ ...|.. ++.+...-|+.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3666777788888888888888888888889999999999999998888866 444433 44444566778888888888
Q ss_pred HHhhCCCC---HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC
Q 001414 223 ALQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 223 al~~~p~~---~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1082)
|......+ ...|-.+......+++ +..-...|.+.++..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIP 181 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhh
Confidence 88776543 3334444444444444 666777777776654
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.31 E-value=1.5e-05 Score=72.59 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS---CPGAIRL 201 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~~ 201 (1082)
|.+++.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++...|++++|+.++++++...|+ + ..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~ 79 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRV 79 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHH
Confidence 3578888999999999999999999999875544 568889999999999999999999999988887 4 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999988877764
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.31 E-value=0.0036 Score=67.41 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 581 (1082)
+..+.+|+.....+...++-..|+.....++...|. ..+.++.++...++-+....+|+++.+
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 455677777777777788888888877777666665 566777777777777766666666544
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.5e-06 Score=70.04 Aligned_cols=67 Identities=36% Similarity=0.503 Sum_probs=56.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567889999999999999999999999999999999999999999999999988888777766654
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=1.8e-05 Score=87.76 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=68.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHH
Q 001414 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252 (1082)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~ 252 (1082)
...++++.|+.+|++....+|+. ...++.++...++..+|+..+.+++..+|.+...+...+.+++..++ ++.
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~---~~l 252 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK---YEL 252 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHH
Confidence 33455666666666665555442 33455555556666666666666666666666666666666666665 566
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1082)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1082)
|+.+.++++...|.+...|..|+.+|...|+++.|+..++.+
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666666666666666666666666666555443
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.23 E-value=0.00023 Score=67.27 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHH
Q 001414 568 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647 (1082)
Q Consensus 568 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~ 647 (1082)
+++....-..+.+.+.|.. .-.+.++..+...|++.+|...|.+++.-.-.+|...++++++. .+..
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~----------- 137 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI----------- 137 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh-----------
Confidence 4444444445555555552 33456677777777777777777777764444466677777776 6666
Q ss_pred hhHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 648 ATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 725 (1082)
Q Consensus 648 ~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 725 (1082)
+++..|...++++.+.+|. .+.....+|.+|...|.+..|...|+.++...| .+......+..+..+|+..
T Consensus 138 -~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 138 -QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred -ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchh
Confidence 6677777777777766664 445555566777777777777777777777665 3556666666677777666
Q ss_pred HHHHHHHHHHH
Q 001414 726 LAMKMYQNCLR 736 (1082)
Q Consensus 726 ~Ai~~~~~al~ 736 (1082)
+|..-|-.+.+
T Consensus 211 ea~aq~~~v~d 221 (251)
T COG4700 211 EANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=1.5e-05 Score=75.88 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=46.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
-|.-+|..|+|.+|...|..+|...|..+ ..|...|.++++++.+..|+..+.+++.++|.. ..++...+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHH
Confidence 35555555555555555555555554432 233344444444444444444444444444444 333444444444
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH
Q 001414 209 KLGQLGKARQAFQRALQLDPENVE 232 (1082)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1082)
++..|+.|+..|.++++.+|....
T Consensus 180 k~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHH
Confidence 444444444444444444444333
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=5.9e-06 Score=68.97 Aligned_cols=64 Identities=28% Similarity=0.547 Sum_probs=31.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
.+++..++|+.|+.++++++..+|.+ +..++..|.|+..+|++.+|+..|+++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 34444555555555555555555554 44444555555555555555555555555555444443
No 206
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.22 E-value=5.5e-07 Score=92.19 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=156.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
-..|..|+.+|.|++|+.+|.+++. ..|.++..+.+.+.+|++...|..|..-+..++.++.....+|...|.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999997 6677778899999999999999999999999999988888999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCCHHH--HHHHHHHHHHcCCHHHHH
Q 001414 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE----EVPIEV--LNNIGVIHFEKGEFESAH 462 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~----~~~~~~--~~~la~~~~~~g~~~~A~ 462 (1082)
+|+..+|...++.++.+.|++....-.++.+- ...++--+.....+. ...... .-.-|..++..|.++.++
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~---Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARIN---SLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc---chHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence 99999999999999999999776655544432 111111111111110 000000 122344555555555555
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHH
Q 001414 463 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 542 (1082)
Q Consensus 463 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 542 (1082)
..+..-+.. ...+..+..+ +..+.+.-+++.++.-.
T Consensus 255 ~~~~~~~A~-------------------------------------------~~~~~~L~~~-~~~~~KI~~~~~~~~~~ 290 (536)
T KOG4648|consen 255 VDVVSPRAT-------------------------------------------IDDSNQLRIS-DEDIDKIFNSNCGIIEE 290 (536)
T ss_pred eEeeccccc-------------------------------------------cCccccCccc-HHHHHHHhhcchhHHHH
Confidence 554432221 0011111111 44455556677777777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHH
Q 001414 543 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 590 (1082)
Q Consensus 543 ~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 590 (1082)
.+.+...|.+.....+.+..-.-.|...++...++.++.+.|.+....
T Consensus 291 ~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 291 VKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred HHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 777777777666666666666666777778888888888877655433
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00043 Score=69.09 Aligned_cols=260 Identities=15% Similarity=0.161 Sum_probs=154.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 001414 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFE 454 (1082)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~ 454 (1082)
....|...-.++.++..+++|..-+...-.++..+... ...-.+| -...+.-.+.......+.+...
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Y-ey~p~iy------------p~rrGSmVPFsmR~lhAe~~~~ 134 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYY-EYYPHVY------------PGRRGSMVPFSMRILHAELQQY 134 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceee-eeccccC------------CCCcCccccHHHHHHHHHHHHh
Confidence 44667777778888888888877776665554222100 0000000 0012222333444444556666
Q ss_pred cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001414 455 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534 (1082)
Q Consensus 455 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 534 (1082)
.|+..+.+.-+...... ...+...+.....
T Consensus 135 lgnpqesLdRl~~L~~~--------------------------------------------------V~~ii~~~e~~~~ 164 (366)
T KOG2796|consen 135 LGNPQESLDRLHKLKTV--------------------------------------------------VSKILANLEQGLA 164 (366)
T ss_pred cCCcHHHHHHHHHHHHH--------------------------------------------------HHHHHHHHHhccc
Confidence 77777766655544331 0111122222223
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 535 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
.+..+..+++-+ ....+.++.++.-.|.|.-.+..+.++++.+ |..|.....+|.+.++.|+.+.|..+|+..
T Consensus 165 ~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 165 EESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444432 2344455556666666666667777776666 556666667777777777777777777644
Q ss_pred hhcCCC-----CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Q 001414 614 SDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 688 (1082)
Q Consensus 614 l~~~~~-----~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A 688 (1082)
-+.... .......+.+.+ |... +++..|...|.+++..+|.++.+.|+.|.|+...|+...|
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 332111 122233344444 5555 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 001414 689 KDLFTQVQEAASGSVFVQMPDVWINLAHVY 718 (1082)
Q Consensus 689 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~ 718 (1082)
++.++++.+..|.... +-.+.+||-.+|
T Consensus 306 iK~~e~~~~~~P~~~l--~es~~~nL~tmy 333 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHYL--HESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHhccCCccch--hhhHHHHHHHHH
Confidence 9999999999885432 334555554433
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.21 E-value=0.015 Score=62.81 Aligned_cols=431 Identities=12% Similarity=0.047 Sum_probs=234.5
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
-++.-++-+|++...|+.+..-+-.+|.+++-.+.++++..-.|--+.+|...-..-...++|.....+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999998888888888777666677789999999999998865543
Q ss_pred hHHHHHH-HHHHHHHc----C----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc------HHhHHHHHHHHHHH
Q 001414 196 PGAIRLG-IGLCRYKL----G----QLGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1082)
Q Consensus 196 ~~~~~~~-lg~~~~~~----g----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~a 260 (1082)
+.|.. +..+-... | ..-+|-+..-.+.-.+|.....|...+..+..... ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33322 22211111 1 12233333333344577777788777766544322 22355666677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-
Q 001414 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN- 336 (1082)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 336 (1082)
+...-++..-+. .+|+.-+.-+.++... ++..| -|-.|...|++......
T Consensus 188 l~tP~~nleklW---------~dy~~fE~e~N~~TarKfvge~sp-----------------~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 188 LQTPMGNLEKLW---------KDYENFELELNKITARKFVGETSP-----------------IYMSARQRYQEIQNLTRG 241 (660)
T ss_pred HcCccccHHHHH---------HHHHHHHHHHHHHHHHHHhcccCH-----------------HHHHHHHHHHHHHHHhcc
Confidence 765433332111 0111111111111100 00000 11222222222211000
Q ss_pred ---CCC----------C-ChhhHHHHHHHHHHc-----CC-HHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001414 337 ---KPH----------E-FIFPYYGLGQVQLKL-----GD-FRSA-LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1082)
Q Consensus 337 ---~~~----------~-~~~~~~~la~~~~~~-----g~-~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1082)
.+| . ...-|++....-... |+ ...- --.+++++...|-.+++|+.....+...++-+.|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 000 0 000122222111111 11 1111 2235666666777778888777777777888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh----------------hcCCCC----CHHHHH--------
Q 001414 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT----------------KAGEEV----PIEVLN-------- 446 (1082)
Q Consensus 396 ~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~----------------~~~~~~----~~~~~~-------- 446 (1082)
+....+.+...|. ....++.++ ...+.+....+|.+ ..+... .++.+.
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~ 398 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTF 398 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhh
Confidence 8777777666554 555566666 33333332222222 001100 111111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001414 447 ---NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 523 (1082)
Q Consensus 447 ---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (1082)
.+...-.+..-...|..+|-++-+.+ .....+.++.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-----------------------------------------~~~h~vyi~~ 437 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEG-----------------------------------------IVGHHVYIYC 437 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccC-----------------------------------------CCCcceeeeH
Confidence 11111112223344444444443311 1111222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC--hHHHHHhhhhhhccc
Q 001414 524 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--PNALSMLGDLELKND 601 (1082)
Q Consensus 524 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g 601 (1082)
.+.. +...|++..|-.+|+..+..+|+.+......-..+...|+-..|..+|++++..-... ...|-.+...-..-|
T Consensus 438 A~~E-~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 438 AFIE-YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHH-HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 2222 4456889999999999999999887777777777888899999999999877644333 345656666666667
Q ss_pred chHHHHHHHHHhhhcCCC
Q 001414 602 DWVKAKETFRAASDATDG 619 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~ 619 (1082)
+...+...-++.....|.
T Consensus 517 ~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 517 SLNNVYSLEERFRELVPQ 534 (660)
T ss_pred chHHHHhHHHHHHHHcCc
Confidence 777777766666666665
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.20 E-value=0.017 Score=62.88 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 180 (1082)
|++++.+|...|.+........+ +.+.++....+-..+.+.-...+...-+..|.++...+-.|...++.|.|.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 45667799999999876654443 3444555666667788877777777778889888888999999999999999
Q ss_pred HHHHHHHHHHhCCCC------------hHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001414 181 SLEFYKRALQVHPSC------------PGAI--RLGIGLCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 181 Al~~~~~al~~~p~~------------~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
|+..+......-... .++. -...+.|+..+|.+.+++..+++.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999887665541111 0111 134689999999999999999998764
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.20 E-value=7.8e-06 Score=68.24 Aligned_cols=70 Identities=33% Similarity=0.416 Sum_probs=61.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
|..+|+..++++.|+.++++++..+|+++..+..+|.++...|++.+|+..|.++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999998887765554
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=2.9e-05 Score=74.00 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001414 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
-.-|.-+|..|+|.+|..-|..+|.+.|..+ ..++.+.|.|+++++.++.|+....++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3445667777788888888888877777662 334566777777788888888888888888887777777777777
Q ss_pred HHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
..... ++.|+..|.+++..+|....+.-..+.+--
T Consensus 179 ek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 179 EKMEK---YEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred Hhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 77766 777888888877777777666665555433
No 212
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.16 E-value=0.046 Score=66.36 Aligned_cols=409 Identities=18% Similarity=0.157 Sum_probs=228.4
Q ss_pred HHHHHHHHHhccCCCC-CchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHHcCCHHH
Q 001414 287 VEQLTETALAVTNHGP-TKSHSYYNLARSYH-SKGDYEKAGLYYMASVKEINKPHEFI----FPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~la~~~~~~g~~~~ 360 (1082)
|++.++.++......| ..+.+++.+|.+++ ...+++.|..++.+++..... +... .+.+.++.++.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 5666666664333322 34566777888777 677888888888888764322 3332 23445677777777666
Q ss_pred HHHHHHHHHHhCCC---cH-HHHH-HH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHH
Q 001414 361 ALTNFEKVLEIYPD---NC-ETLK-AL-GHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAF 432 (1082)
Q Consensus 361 A~~~~~~~l~~~p~---~~-~~~~-~l-a~~~~~~g~~~~A~~~l~kal~~~--p~~~~~~~~la~~~~~~~~~~Al~~l 432 (1082)
|...+++.++.... .. ...+ .+ ...+...+++..|+..++...... +.++.+...
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~----------------- 180 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL----------------- 180 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH-----------------
Confidence 88888887765433 11 1111 12 222323367777777777776654 233332221
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCc
Q 001414 433 KTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 512 (1082)
Q Consensus 433 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (1082)
+....+.++...+....++..++.+........ . ...
T Consensus 181 -----------~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q-~------------------------------~~~- 217 (608)
T PF10345_consen 181 -----------ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ-L------------------------------DPS- 217 (608)
T ss_pred -----------HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc-c------------------------------CCC-
Confidence 122335566677777888888877754211000 0 000
Q ss_pred CCCCchHHHHHHHHHH--HHhcCChHHHHHHHHHH---HH---hCC---C---------------------h--------
Q 001414 513 ELPWNKVTVLFNLARL--LEQIHDTVAASVLYRLI---LF---KYQ---D---------------------Y-------- 552 (1082)
Q Consensus 513 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~---l~---~~p---~---------------------~-------- 552 (1082)
..+....++..+-.+ +...|++..+...++.+ +. ..| . .
T Consensus 218 -~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 218 -VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred -CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 122233344444333 44556666666554443 22 111 0 0
Q ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCh--------------------------HHHHHhhhhhhcccc
Q 001414 553 ----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP--------------------------NALSMLGDLELKNDD 602 (1082)
Q Consensus 553 ----~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--------------------------~~~~~lg~~~~~~g~ 602 (1082)
.-+|+.-|...+..+..+.|.+++.++++.-.+.. .+.+..+++.+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 12344445556677777788888888776321110 134556777788899
Q ss_pred hHHHHHHHHHhhhcC---CC-----CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHH--------HHHhhcC
Q 001414 603 WVKAKETFRAASDAT---DG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHT 666 (1082)
Q Consensus 603 ~~~A~~~~~~al~~~---~~-----~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~p 666 (1082)
+..|...+..+.... |. ..++.++..|-. +... |+.+.|...|. .+....+
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCc
Confidence 999999998777642 11 235566666655 5566 99999999998 4445555
Q ss_pred C---CHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH----H---cCCHHHHHHHHH
Q 001414 667 S---NLYAANGAGVVLAEKGQFDV----SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF----A---QGNFALAMKMYQ 732 (1082)
Q Consensus 667 ~---~~~a~~~la~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~----~---~g~~~~Ai~~~~ 732 (1082)
. .+.+..++.+++...+.-.. +-.++.++-.... +.+..++..+++++ . .-...++...+.
T Consensus 444 ~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~ 518 (608)
T PF10345_consen 444 FRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQ 518 (608)
T ss_pred chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence 4 33455566777776554333 4444444333221 12222333333222 1 123458888888
Q ss_pred HHHHhh-cCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 733 NCLRKF-YYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 733 ~al~~~-~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
.+++.+ ....+ .-++..++..++ .|+..+.......+..+....
T Consensus 519 ~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 519 EALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 888876 22222 344566777777 788888776666677665543
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=6.6e-06 Score=69.67 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC-C----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 001414 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 706 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~-~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 774 (1082)
+...++.++|.+|..+|+|++|+.+|++++....... + +.++..+|.+|...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5677899999999999999999999999997642111 1 6778899999999999999999999998763
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.15 E-value=0.00016 Score=68.34 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
..+.+|...+. .-| .....+.+|..+...|++.+|...|.+++. ....++..++++|...+..+++..|...++
T Consensus 74 R~~Rea~~~~~----~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 74 RHLREATEELA----IAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HHHHHHHHHHh----hch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34445555554 445 345688899999999999999999999986 456778999999999999999999999999
Q ss_pred HHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 001414 187 RALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 187 ~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
...+.+|.. .++..+.+|..+..+|.+..|...|+.++...|+ +.+....+..+..+|.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 999998865 5677899999999999999999999999998884 6677777888888885
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.05 E-value=0.00024 Score=62.88 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHH
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~ 207 (1082)
+-..|..+...|+.+.|++.|.+++.+.|.++.+|..+|..+.-+|+..+|+.-+.+++.+.... ....+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986443 345678899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001414 208 YKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887543
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.03 E-value=0.00096 Score=73.82 Aligned_cols=119 Identities=19% Similarity=0.087 Sum_probs=90.2
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
++..+++.+|.+...+..-+..+-.+|+.-+|..++..++-..|.. -.+++.+|.++.+.|...+|--++.-++.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3445566666665555555555566799999999999988877654 35678889999999999998888887777666
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1082)
.. ...++.++.++..+|.+......|..+.+.+|....+.-
T Consensus 281 ~~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~ 321 (886)
T KOG4507|consen 281 FF-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIK 321 (886)
T ss_pred cc-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHH
Confidence 66 455888999999999999999999988888887554433
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0026 Score=63.70 Aligned_cols=223 Identities=13% Similarity=0.164 Sum_probs=108.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh----HHHH------HHHHHHHHHHHHHhchhhhhhhhhH
Q 001414 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV----RYER------IAILNALGVYYTYLGKIETKQREKE 107 (1082)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~----~~~~------~~~~~~la~~y~~~g~~~~~~~~k~ 107 (1082)
..+.+|...-.++.+....++|..-|+..-..+..++|-.. .+++ .++...-|.+...+|.....- .|-
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesL-dRl 145 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESL-DRL 145 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHH-HHH
Confidence 35668888888899999999998888876554443332211 1111 111112222333344333100 000
Q ss_pred H----HHHHHHHHHHHHHhcCCC-Ch--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 001414 108 E----HFILATQYYNKASRIDMH-EP--------STWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEF 173 (1082)
Q Consensus 108 ~----~~~~A~~~~~~al~~~p~-~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~ 173 (1082)
. ...+-+..++. ..-|. .. .+.+.++.+++..|.|.-....+.++++.+ |..+.....++.+.+
T Consensus 146 ~~L~~~V~~ii~~~e~--~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 146 HKLKTVVSKILANLEQ--GLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 0 00001111110 01111 11 122334555555556666666666666555 344555555666666
Q ss_pred HcCChHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Q 001414 174 NRGRYSDSLEFYKRALQVHP-----SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1082)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1082)
+.|+.+.|..+|+.+-+.+. .....+....+.+|.-.+++..|...|.+++..+|.++.+....|.+.+..|+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-- 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-- 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--
Confidence 66666666666654333211 11123344445555555555566666666666666666555555555555555
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 001414 249 GIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~p~ 266 (1082)
...|++.++.++...|.
T Consensus 302 -l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 -LKDALKQLEAMVQQDPR 318 (366)
T ss_pred -HHHHHHHHHHHhccCCc
Confidence 55566666555555554
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.97 E-value=1.2e-05 Score=68.09 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh--cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 666 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA--SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 666 p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
|+-..+++++|.+|...|++++|+.+|+++++.. -+...+....++.++|.+|..+|++++|+++|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456788999999999999999999999999774 111222457789999999999999999999999999864
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.94 E-value=0.052 Score=59.17 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
.+...|.++-.++++.+|..+|.++.+...+++. .+.++..-.+-..+.+.-...+...-+..|.+ +.+.+..|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc-hHHHHHHH
Confidence 4556788889999999999999999876655532 33344444455566666656665566667876 67777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 001414 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1082)
...++.|.+.+|+..+..-...-......|...- +.+ +. .+...-...+.++...|.+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----------i~~----------l~-~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----------IQQ----------LF-SDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----------HHH----------Hh-hHHHHHHHHHHHHHhcCCc
Confidence 8889999999998887765443222111111110 000 00 1122334456677778888
Q ss_pred HHHHHHHHHHHh
Q 001414 285 FLVEQLTETALA 296 (1082)
Q Consensus 285 ~~A~~~~~~~l~ 296 (1082)
.++..++++++.
T Consensus 145 ~EgR~iLn~i~~ 156 (549)
T PF07079_consen 145 SEGRAILNRIIE 156 (549)
T ss_pred chHHHHHHHHHH
Confidence 888777777764
No 220
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.1 Score=62.06 Aligned_cols=600 Identities=12% Similarity=0.065 Sum_probs=303.8
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh---HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHH
Q 001414 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV---RYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112 (1082)
Q Consensus 36 e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~ 112 (1082)
-+.++.+-.++|.-|..+=-.+.-+++|+.--+-..--||-++ ..+...+++....+-++.|+. .+
T Consensus 674 irqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qi-----------kE 742 (1666)
T KOG0985|consen 674 IRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQI-----------KE 742 (1666)
T ss_pred HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccH-----------HH
Confidence 3467888889999999998888889999885433222222111 011223333344444444443 33
Q ss_pred HHHHHHHHHhcCCCChh---------------------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------
Q 001414 113 ATQYYNKASRIDMHEPS---------------------TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL------ 165 (1082)
Q Consensus 113 A~~~~~~al~~~p~~~~---------------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------ 165 (1082)
....++..--.+|.... -++.--..|+..++..+=++.|-+ +.+|.....-
T Consensus 743 vERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~LLD 820 (1666)
T KOG0985|consen 743 VERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGALLD 820 (1666)
T ss_pred HHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhhhhc
Confidence 33333332222221111 112223455566666665655543 3345432111
Q ss_pred ------HHHHHHHH---------------HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH--------
Q 001414 166 ------LGQACVEF---------------NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA-------- 216 (1082)
Q Consensus 166 ------~~la~~~~---------------~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A-------- 216 (1082)
+....+.. +.++..--+.+++..+.....+ +.++..+|.+|...++-.+-
T Consensus 821 ~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d-~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 821 VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQD-PATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcc-hHHHhhhhheeecCCCChHHhcccCCcc
Confidence 11111222 2233344444555555555555 66777777777665543321
Q ss_pred --HHHHHHHHhhCCC--------------------CHHHHHHHHHHHHHhccHHhHHHHH--------HHHHHHHHh---
Q 001414 217 --RQAFQRALQLDPE--------------------NVEALVALAVMDLQANEAAGIRKGM--------EKMQRAFEI--- 263 (1082)
Q Consensus 217 --~~~~~~al~~~p~--------------------~~~a~~~la~~~~~~~~~~~~~~A~--------~~~~~al~~--- 263 (1082)
...=.-+-+.+|. .-..+..++..+....+..-+.+.+ ....+.+..
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 1111111112221 0112334444444444433333333 122222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChh
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1082)
...+|.....-...+...+-..+.+.++++++-.......+......+.... -.-+......+..+.-. -+.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdn-----yDa-- 1051 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDN-----YDA-- 1051 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhcc-----CCc--
Confidence 1235555566667777778888888888887743222222222222222221 22334444555544421 111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hc
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~ 422 (1082)
-.+|.+.+..+-|++|...|.+.- -+..+...| ....+..+.|.++-+++ +.+..|..++..- ..
T Consensus 1052 --~~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 --PDIAEIAIENQLYEEAFAIFKKFD----MNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred --hhHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhc
Confidence 124666677777778777776531 122222211 22345556666655544 3456666666665 66
Q ss_pred CCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhh
Q 001414 423 SDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 502 (1082)
Q Consensus 423 ~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1082)
+...+|++.|-+ ..++..|........+.|.|++-+.++.-+.+...- .......+ +.+....-.
T Consensus 1118 ~~v~dAieSyik----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-----~~id~eLi------~AyAkt~rl 1182 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-----PYIDSELI------FAYAKTNRL 1182 (1666)
T ss_pred CchHHHHHHHHh----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-----ccchHHHH------HHHHHhchH
Confidence 666666666655 233445555666666677777777766655442110 00000000 000000000
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 503 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
..++... ..|+. .-.-..|.-+...|.++.|.-+|.. +.-|..|+..+...|+|..|....+++
T Consensus 1183 ~elE~fi----~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1183 TELEEFI----AGPNV-ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHHHHh----cCCCc-hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 0000000 22322 2333456666666788777777754 455777888888888888888877775
Q ss_pred cCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHH
Q 001414 583 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 662 (1082)
Q Consensus 583 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 662 (1082)
++..+|-..+......+.+.-|.-+=-.++-.. .-+-.|.+. |... |.+++-+.+++.+|
T Consensus 1247 --ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha-----deLeeli~~-Yq~r------------GyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA-----DELEELIEY-YQDR------------GYFEELISLLEAGL 1306 (1666)
T ss_pred --cchhHHHHHHHHHhchhhhhHHHhcCceEEEeh-----HhHHHHHHH-HHhc------------CcHHHHHHHHHhhh
Confidence 345677777777666666655544322222111 112234443 4444 99999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCchHHHHHHH---------HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001414 663 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFT---------QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 729 (1082)
Q Consensus 663 ~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~---------~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~ 729 (1082)
.+.......+..||++|.+-+ +++-.+.++ +++... +....|..+..+|.+-..|+.|.-
T Consensus 1307 GLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~------eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1307 GLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAA------EQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHH------HHHHHHHHHHHHHHhhhhhhHHHH
Confidence 888778888888898888643 333333332 223322 345677777777777777776653
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.90 E-value=4.7e-05 Score=83.63 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=40.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+++..|+.+|.+|+..|+|++|+..|++++.++|++..+ |+.+|++|..+|++++|+..|++++.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666666666665532 566666666666666666666666554
No 222
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.90 E-value=0.00022 Score=63.11 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC--HHHHHHHH
Q 001414 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 751 (1082)
Q Consensus 674 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~~La 751 (1082)
.-|+++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-++++++..+.... ...+...|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 458888999999999999999999998 78999999999999999999999999999998543322 56777889
Q ss_pred HHHHHhccHHHHHHHHHHHHhhCC
Q 001414 752 RTHYEAEQWQDCKKSLLRAIHLAP 775 (1082)
Q Consensus 752 ~~~~~~g~~~eA~~~l~~al~~~p 775 (1082)
.+|...|+.+.|+.-|..|-++..
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999998888764
No 223
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.077 Score=58.70 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=79.2
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
+...+.-..+-..+...|-+.+|...|.......|-....+.....+-.. .-+...+..+|..++.....+++.|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 34445555566677788889999999999999888877776666555322 2247788999999999999999999999
Q ss_pred hhhhhcccchHHHHHHHHHhhhc
Q 001414 594 GDLELKNDDWVKAKETFRAASDA 616 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~ 616 (1082)
-..-...|..+.+-..+.++++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 88888999988888888888763
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.85 E-value=6.6e-05 Score=82.49 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=65.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001414 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1082)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1082)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999832 459999999999999999999999999973
No 225
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.82 E-value=0.0044 Score=73.75 Aligned_cols=270 Identities=17% Similarity=0.166 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHH
Q 001414 518 KVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKV 582 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~a~~~la~~~~~~g-----~~~eA~~~~~~al~~ 582 (1082)
+....+.+|.++..- .+++.|+.+|+.+... .-.++.+.+.+|.+|.... +...|+.+|.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 566777777777653 5899999999998761 1124567888999988754 677899999998776
Q ss_pred cCCChHHHHHhhhhhhccc---chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHH
Q 001414 583 NGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 659 (1082)
Q Consensus 583 ~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 659 (1082)
. ++.+.+.+|.++..-. ++..|..+|..+.... ...+.+.++.+ |..- .... .+...|..+|.
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G-~gv~-------r~~~~A~~~~k 388 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELG-LGVE-------RNLELAFAYYK 388 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhC-CCcC-------CCHHHHHHHHH
Confidence 5 6778888999887765 5789999999998776 55677778877 5443 1111 67899999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 001414 660 RVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKMYQNC 734 (1082)
Q Consensus 660 ~~l~~~p~~~~a~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~----g~~~~Ai~~~~~a 734 (1082)
++...+ ++.+...++..+... +.++.+...+....+..-.... .+...+.......... .+...+...|.++
T Consensus 389 ~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 465 (552)
T KOG1550|consen 389 KAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ-SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRA 465 (552)
T ss_pred HHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh-hHHHHHHHhccccccccccccchhHHHHHHHHH
Confidence 999988 566666666665543 7788877777776665521000 0111111111111111 2566677777766
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHH
Q 001414 735 LRKFYYNTDAQILLYLARTHYEA----EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTV 810 (1082)
Q Consensus 735 l~~~~~~~~~~~~~~La~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~ 810 (1082)
.. ..++.+...||.+|+.- .++..|...|.++.... ....||++.+ ...|. ...
T Consensus 466 ~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~-~e~g~--------------g~~ 523 (552)
T KOG1550|consen 466 AA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM-HEHGE--------------GIK 523 (552)
T ss_pred Hh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH-HhcCc--------------Ccc
Confidence 54 46688889999999885 35889999999999888 8899999996 33432 222
Q ss_pred HHHHHHHHHHHHHhhCC
Q 001414 811 AELENAVRVFSHLSAAS 827 (1082)
Q Consensus 811 ~~l~~A~~~f~~l~~~~ 827 (1082)
. +..|.+++...+..+
T Consensus 524 ~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEED 539 (552)
T ss_pred h-hHHHHHHHHHHHhcC
Confidence 3 778888888887654
No 226
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.013 Score=57.91 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc----C--CChHHHHHhhhhhhcccchH
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----G--KYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~ 604 (1082)
-.+.+++|..+|.++ +.+|....++..|-..|-++-... . +....+.-.+.+| +.+++.
T Consensus 26 g~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence 345677777776665 333444444444444444443322 0 1122344444553 445788
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc-C
Q 001414 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-G 683 (1082)
Q Consensus 605 ~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~-~ 683 (1082)
+|+.++++++++ |..+ |++..|..+.. .+|.+|... .
T Consensus 91 eAv~cL~~aieI----------------yt~~------------Grf~~aAk~~~--------------~iaEiyEsdl~ 128 (288)
T KOG1586|consen 91 EAVNCLEKAIEI----------------YTDM------------GRFTMAAKHHI--------------EIAEIYESDLQ 128 (288)
T ss_pred HHHHHHHHHHHH----------------HHhh------------hHHHHHHhhhh--------------hHHHHHhhhHH
Confidence 888888877654 3444 55555544432 345555433 6
Q ss_pred CchHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHh
Q 001414 684 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEA 757 (1082)
Q Consensus 684 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~~~~~La~~~~~~ 757 (1082)
++++|+..|+++-+-..+.... .....++..+..-...++|.+||..|+++....-+++- -..++.-|.|++-.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 7788888888887766432110 12234556677777889999999999998875322222 23455678888888
Q ss_pred ccHHHHHHHHHHHHhhCCCCcch
Q 001414 758 EQWQDCKKSLLRAIHLAPSNYTL 780 (1082)
Q Consensus 758 g~~~eA~~~l~~al~~~p~~~~~ 780 (1082)
++.-.+...+++-..++|.-...
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999975443
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0024 Score=66.12 Aligned_cols=172 Identities=14% Similarity=0.109 Sum_probs=133.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhc-CCCCcHHHHH--HhHhHHHHH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNYFA 635 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~d~~~~~--~Lg~~~y~~ 635 (1082)
-+.+....|++.+|.....+.+.-.|.+..++..--.+++.+|+...-...+++++-. ++....|+++ .++-. +..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHH
Confidence 4556677899999999999999999999999999999999999999999999999876 4443334332 22222 334
Q ss_pred HhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001414 636 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715 (1082)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 715 (1082)
. |.|++|.+.-+++++++|.+.++...++.++...+++.++.++..+--..-..+.. -...-|...|
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHHHH
Confidence 4 99999999999999999999999999999999999999999998876543321110 1234566778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCH
Q 001414 716 HVYFAQGNFALAMKMYQNCLRKFYYNTDA 744 (1082)
Q Consensus 716 ~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 744 (1082)
.++...+.|+.|+++|..-+-.-....|.
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 88999999999999998766443344443
No 228
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.74 E-value=0.00033 Score=66.79 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
--.|..|.+.++.....||.+++.++..|.+++...+ +++|+.-|+.++.++|+...+++.+|.++...+
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3456788888888888999999988888887776643 456677777777778887777777777776554
No 229
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.73 E-value=0.01 Score=70.67 Aligned_cols=282 Identities=16% Similarity=0.123 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 001414 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG-- 176 (1082)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-- 176 (1082)
....|..+|+.+... .+..+...+|.+++.- .+.+.|+.+|..+... .-.++.+...+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887655 4667777888887765 5799999999998771 1125667888999988853
Q ss_pred ---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHh
Q 001414 177 ---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAG 249 (1082)
Q Consensus 177 ---~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~ 249 (1082)
++..|+.+|.++......+ ..+.+|.|+..-. ++..|..+|..+... .+..+.+.++.++..- |-..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 7788999999988776543 5788888888766 678999999998754 5788888888887653 22344
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHHHc----CCHHH
Q 001414 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAVTNHGPTKSHSYYNLAR-SYHSK----GDYEK 323 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~-~~~~~----g~~~~ 323 (1082)
...|..++.++.... .+.+...++.++... +.+..+...+..........+.....++..-. ..... .+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 889999999999888 444445554444333 55555544444333222111111111111111 11111 14455
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHH
Q 001414 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQ 396 (1082)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~ 396 (1082)
+...+.++.. ..+..+...+|.+|..- .+++.|...|..+.... ....+++|.++..- ..+..|.
T Consensus 458 ~~~~~~~a~~-----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAA-----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAK 529 (552)
T ss_pred HHHHHHHHHh-----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHH
Confidence 5555555543 34455566666666543 34677777777766654 66667777666533 1256666
Q ss_pred HHHHHHHHhCC
Q 001414 397 ELLRKAAKIDP 407 (1082)
Q Consensus 397 ~~l~kal~~~p 407 (1082)
.+|.++...+.
T Consensus 530 ~~~~~~~~~~~ 540 (552)
T KOG1550|consen 530 RYYDQASEEDS 540 (552)
T ss_pred HHHHHHHhcCc
Confidence 66666655443
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00077 Score=72.77 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
+|+.......+.+..+.|..+|.++++..+.+...|...|.+.+. .++...|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 344444444444445555555555553333344555555555444 333344555555555555555 444555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
..|+.+.|+.+|++++..-|... ..|.....+-...|+ ......+..++....|...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 55555555555555555444332 345555555555555 5555556666666555533
No 231
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.70 E-value=0.00037 Score=66.41 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001414 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1082)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1082)
|+.|.+.++.....+|.++..++.-|.++..+.+ +++|+.-|+.++.++|+. ..+++.+|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHH
Confidence 6778888888888889888888888877766533 344555555555666665 455555555555443
No 232
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.69 E-value=0.0047 Score=68.60 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=84.8
Q ss_pred HHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHH
Q 001414 591 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 670 (1082)
Q Consensus 591 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 670 (1082)
+.-|......|+...|+.++..++...|......+..|+++ .+.. +....|-.++.++|.+....+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~-~~~~------------~~~~da~~~l~q~l~~~~sepl 677 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANL-LIHY------------GLHLDATKLLLQALAINSSEPL 677 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHH-HHHh------------hhhccHHHHHHHHHhhcccCch
Confidence 33455555678888888888888888877666777788887 6666 7778888888888888877888
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001414 671 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 719 (1082)
Q Consensus 671 a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 719 (1082)
..+.+|.++...++.+.|++.|++++...| +++.+-..|-.+-+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-----~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTT-----KCPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCC-----CChhhHHHHHHHHH
Confidence 888888888888888888888888888887 55665555544444
No 233
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0013 Score=70.93 Aligned_cols=127 Identities=12% Similarity=0.186 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 727 (1082)
+..+.|..+|.++++..+.+...|...|.+-.. .++...|..+|+.++...| .++.+|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 669999999999997666677888888888666 5666679999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcch
Q 001414 728 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 780 (1082)
Q Consensus 728 i~~~~~al~~~~~~~-~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 780 (1082)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999998743333 35688888888888999999999999999999985543
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.0025 Score=70.29 Aligned_cols=192 Identities=19% Similarity=0.213 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHh
Q 001414 558 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 637 (1082)
Q Consensus 558 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~ 637 (1082)
.+..-..+..++..-++..++|++++|+.+.+|..++.- ......+|..+|+++++.... .++.. .....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhhc
Confidence 344445667778888888899999999988888877652 233467888888888764422 11111 11000
Q ss_pred hhhccCchHHhhHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001414 638 RNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 716 (1082)
Q Consensus 638 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~ 716 (1082)
. |. .++.....+- --+++-..+|.+..+.|+.++|++.|+.++...|.. ++..++.+|..
T Consensus 243 ~----------g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie 303 (539)
T PF04184_consen 243 H----------GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIE 303 (539)
T ss_pred c----------cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHH
Confidence 0 10 1111111111 134556688999999999999999999999877732 46779999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cc---------------HHHHHHHHHHHHhhCCCCcc
Q 001414 717 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQ---------------WQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 717 ~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~-g~---------------~~eA~~~l~~al~~~p~~~~ 779 (1082)
+++.++.|.++..++.+. ....-|..+.+.|.-+..-.+. |+ -..|.+.+.+|++.+|.-|.
T Consensus 304 ~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 999999999998887764 2222345566666555443331 21 23477899999999998654
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0046 Score=64.11 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHH--HHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-HPSCPGA--IRLGIGLC 206 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~p~~~~~--~~~~lg~~ 206 (1082)
-....+.+++.+|++.+|....+++++-.|.+..++..--.+++.+|+...-...+++++.. +|+.|.. +.-.++.+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34445667788999999999999999999999999888888999999999999999999887 6666433 34457889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1082)
+...|-|++|...-.+++++||.+.-+...++.++...++ +.++.+...+.-..-. ..+. +
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr---~s~m-l------------ 245 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWR---QSWM-L------------ 245 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchh---hhhH-H------------
Confidence 9999999999999999999999999999999999998888 8888887664322111 0000 0
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1082)
....|...+.++...+.|+.|+..|.+-+
T Consensus 246 -----------------asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 -----------------ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -----------------HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 01335556667777778888888877654
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00049 Score=67.93 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1082)
..|..|+..|.+++.++|..+..|..++.++++..+++.+..-..+++.++|+.+.+.+.+|.++.....|.+|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 001414 188 ALQVH 192 (1082)
Q Consensus 188 al~~~ 192 (1082)
+..+.
T Consensus 104 a~sl~ 108 (284)
T KOG4642|consen 104 AYSLL 108 (284)
T ss_pred HHHHH
Confidence 86653
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00014 Score=71.77 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=70.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 001414 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
..|..++....|..|+..|.+++.++|.. +..+.+.+.|++++.+++.+.....++++++|+.+.+++.+|...+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34556666777777778888888878777 66677777888888888888777788888888777777777777777766
Q ss_pred HHhHHHHHHHHHHHHHh
Q 001414 247 AAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 247 ~~~~~~A~~~~~~al~~ 263 (1082)
+..|+..+++++.+
T Consensus 94 ---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 ---YDEAIKVLQRAYSL 107 (284)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 77777777777554
No 238
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.18 Score=55.86 Aligned_cols=420 Identities=10% Similarity=0.051 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRA 188 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~a 188 (1082)
...-..+|..+...-+.++..|.......-+.+.+.+--.+|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34567788888888888999999998888888889999999999999999999999999988888776 89999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---------hccHHhH---------
Q 001414 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ---------ANEAAGI--------- 250 (1082)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---------~~~~~~~--------- 250 (1082)
|..+|++ +.+|...-..-. . +-.=+..-.+.+..+..+...-...+..... .+.....
T Consensus 167 LR~npds-p~Lw~eyfrmEL--~-~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d 242 (568)
T KOG2396|consen 167 LRFNPDS-PKLWKEYFRMEL--M-YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFD 242 (568)
T ss_pred hhcCCCC-hHHHHHHHHHHH--H-HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHH
Confidence 9999999 554432211110 0 0000111111122221111100001100000 0000000
Q ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhccCCCCCchHHH
Q 001414 251 ---RKGMEKMQRAFEIYPYCAMALNYLANHFFFT-------------------GQHFLVEQLTETALAVTNHGPTKSHSY 308 (1082)
Q Consensus 251 ---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~~l~~~~~~~~~~~~~ 308 (1082)
+.--..+.-.....|.+|..+..++.-.+.. -.-.....+|+.++...... .....|
T Consensus 243 ~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~-sm~e~Y 321 (568)
T KOG2396|consen 243 FLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTE-SMWECY 321 (568)
T ss_pred HHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHH-HHHHHH
Confidence 0011112222344677777776666443221 01112344455444321100 000111
Q ss_pred HHHHHHHHH--cC-CHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCcHHHHHHHHH
Q 001414 309 YNLARSYHS--KG-DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF-EKVLEIYPDNCETLKALGH 384 (1082)
Q Consensus 309 ~~la~~~~~--~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~l~~~p~~~~~~~~la~ 384 (1082)
..+-..++. .| ....-..+|+.+.......+....-|..++.++.......++...+ ...+. ++...|...-.
T Consensus 322 I~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~ 398 (568)
T KOG2396|consen 322 ITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGKMWQLKLQ 398 (568)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc---chHHHHHHHHH
Confidence 111111111 11 3444455555555543344555666666667766666544433322 23332 44455544444
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCC-HHHHHHHH--Hh--hcCCCCCHHHHHHHHHHHHHcCCH
Q 001414 385 IYVQL-GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD-TGAALDAF--KT--KAGEEVPIEVLNNIGVIHFEKGEF 458 (1082)
Q Consensus 385 ~~~~~-g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~-~~~Al~~l--~~--~~~~~~~~~~~~~la~~~~~~g~~ 458 (1082)
+.... .++.--...+...++..+.+...-...+. ..++ ....+..+ .. ....+....+-..+-..+.+.|-+
T Consensus 399 ~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~--~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~ 476 (568)
T KOG2396|consen 399 VLIESKSDFQMLFEELFNHLRKQVCSELLISWASA--SEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGY 476 (568)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHH--hhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcch
Confidence 33322 12211111111112222222111111100 1122 11111111 11 223334445555666777888889
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH--hcCChH
Q 001414 459 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE--QIHDTV 536 (1082)
Q Consensus 459 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~ 536 (1082)
.+|...|.+... .+|.....+-.+...-. ...+..
T Consensus 477 ~~ark~y~~l~~-------------------------------------------lpp~sl~l~r~miq~e~~~~sc~l~ 513 (568)
T KOG2396|consen 477 KKARKVYKSLQE-------------------------------------------LPPFSLDLFRKMIQFEKEQESCNLA 513 (568)
T ss_pred HHHHHHHHHHHh-------------------------------------------CCCccHHHHHHHHHHHhhHhhcCch
Confidence 999999988776 33333333333332211 112367
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 537 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 537 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
.+..+|..++.....+++.|...-..-...|..+.+-.++.++++.
T Consensus 514 ~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 514 NIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 7888999999888888999988888888899999998888888773
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.60 E-value=0.0092 Score=65.34 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----cCCChHHHHHhhhhhhc---ccchHHHHHHHHHhhhcCCCCcHHHH
Q 001414 553 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 625 (1082)
Q Consensus 553 ~~a~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~d~~~~ 625 (1082)
++....+-..|....+|+.-+.+++.+-.+ -+..+.+.+.+|.++.+ .|+.++|+..+..++.....+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566667788888888888888877666 45677788888888888 88999999999997776666677788
Q ss_pred HHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH----HHh--
Q 001414 626 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ----EAA-- 699 (1082)
Q Consensus 626 ~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~----~~~-- 699 (1082)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++.-.|.......-++++. ...
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888 77664332111 12559999999999999996 44555566777776665433333333322 000
Q ss_pred -cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 700 -SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 700 -p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
.......+.+.+-.++.+.+-.|++++|++.++++++.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 00000123333344444555555555555555555543
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.099 Score=60.84 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
....|..++....... |..+-..+..|+++...|+.++|+..|++++..-. -..-....++.++.++..+++|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445666666665443 55556666777777777777777777776663111 1122345577788888888888888
Q ss_pred HHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 001414 362 LTNFEKVLEIYPDNC-ETLKALGHIYVQLGQI-------EKAQELLRKAAKI 405 (1082)
Q Consensus 362 ~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~l~kal~~ 405 (1082)
..+|..+.+.+.-.. -..+..|.++...|+. ++|..+|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888887654433 3445667778888877 8888888877654
No 241
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.021 Score=56.61 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH---
Q 001414 519 VTVLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN--- 588 (1082)
Q Consensus 519 ~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~--- 588 (1082)
+..+..+|.+|..- .+++.|+..|+++-.-... --.+++..+......++|.+|+..|+++....-+++.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 34456678888765 8899999999998764432 2457888888889999999999999999887766554
Q ss_pred ----HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 589 ----ALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 589 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
.++.-|.|++...+.-.+...+++.....|.
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3455677777778887888888888777776
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.51 E-value=0.0042 Score=68.53 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=134.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF- 279 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 279 (1082)
..+..-.++..+...-+++-.+||+++|+++.+++.|+.-.... ..++..+|+++++...... +....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~T-----i~Eae~l~rqAvkAgE~~l------g~s~~~ 240 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAST-----IVEAEELLRQAVKAGEASL------GKSQFL 240 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccC-----HHHHHHHHHHHHHHHHHhh------chhhhh
Confidence 34556677888899999999999999999999999998754444 6788888888877543221 11100
Q ss_pred -HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCH
Q 001414 280 -FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1082)
Q Consensus 280 -~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1082)
..|..-+ .... ........+...+|.+..+.|+.++|++.|..+++..+ ..+...++.+|..+++..+.|
T Consensus 241 ~~~g~~~e-------~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 241 QHHGHFWE-------AWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hcccchhh-------hhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCH
Confidence 0111000 0000 00112235567799999999999999999999997543 224566889999999999999
Q ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 359 RSALTNFEKVLEI-YPDNCETLKALGHIYVQL-GQ---------------IEKAQELLRKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 359 ~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~l~kal~~~p~~~~~~~~l 416 (1082)
.++...+.+.-.+ -|+.+...+..+.+-.+. ++ -..|++.+.++++.+|..+..++.+
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 9999998886444 356666666666554332 11 2347788999999999887665544
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.49 E-value=0.00025 Score=51.94 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1082)
|.+|+.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567778888888888888888888888888888888877764
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.49 E-value=0.0025 Score=73.96 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=124.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhc
Q 001414 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1082)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~ 123 (1082)
+.+....--.|+-+.+++.|..+..... ....+..+..|+.+..-.+-.... . .......|..++......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~-------i~~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN-------IRSPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKR 262 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC-------cchHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHh
Confidence 3444445557999999999998755311 112233333333333222222211 1 345667899999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001414 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1082)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1082)
.|+.+..++..|.++...|+.++|+..|+.++..... ...+++.++.++..+++|.+|..+|.+..+.+.-+....
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999988742221 245678899999999999999999999999887776777
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 001414 200 RLGIGLCRYKLGQL-------GKARQAFQRALQ 225 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~-------~~A~~~~~~al~ 225 (1082)
.+..|.|+..+|+. ++|...|.++-.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88899999999988 666666666543
No 245
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.49 E-value=0.13 Score=61.32 Aligned_cols=240 Identities=15% Similarity=0.076 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
.+......+.......++.+|..+..++...-|. .....-..|.+....|+++.|.++.+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556677777788888888888877654433 1334445667788899999999999999988776543
Q ss_pred -----HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHh-----HhHHHHHHhhhhccCchHHhhH--HHHHHH
Q 001414 589 -----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL-----GNWNYFAALRNEKRAPKLEATH--LEKAKE 656 (1082)
Q Consensus 589 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~L-----g~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 656 (1082)
++..+|.+..-.|++.+|..+...+.+.....+.+.+..+ +.+ .... |. +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 6777888888899999999999988887555455433222 222 2222 42 222223
Q ss_pred HH----HHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCC-chHHHHHHHHHHHHcCCHHHHHHH
Q 001414 657 LY----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQ-MPDVWINLAHVYFAQGNFALAMKM 730 (1082)
Q Consensus 657 ~~----~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~-~~~~~~~la~~~~~~g~~~~Ai~~ 730 (1082)
.| .+-+...|...+..-..+.++...-+++.+..-....++.... ...+- ..-+++.|+.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33 3334455665566555555555444477776666666655411 01111 222345899999999999999999
Q ss_pred HHHHHHhhcCCC-C----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 001414 731 YQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 731 ~~~al~~~~~~~-~----~~~~~~La~~~~~~g~~~eA~~~l~~a 770 (1082)
...+......+. . ..+.......+...|+...|...+.+.
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999988765442 1 122222333455679999998888763
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.025 Score=56.42 Aligned_cols=202 Identities=14% Similarity=0.136 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL------VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
..+..-+.+|...+++++|..++.++.+-..+|...| -..+.+...... +.++..+++++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k---lsEvvdl~eKAs---------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK---LSEVVDLYEKAS---------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHH----------
Confidence 3445555666666777777777777664433332211 111111111111 444444444433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC---hhhHHHH
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYGL 348 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~l 348 (1082)
..|...|..+.|-..++++-. ....-++++|+++|++++..+...... ...+-..
T Consensus 99 ----~lY~E~GspdtAAmaleKAak------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 99 ----ELYVECGSPDTAAMALEKAAK------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred ----HHHHHhCCcchHHHHHHHHHH------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 345555655555555554432 234456788888888877644332222 2234456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID----PRDAQAFIDLGE 418 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~----p~~~~~~~~la~ 418 (1082)
+.++.+...+.+|...+.+-... .|.....+.....+|+...++..|..+++...++. |.+..+..+|-.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 77888888898888777765432 34445566667777777789999999999877653 566777777777
Q ss_pred HHhcCCHHHHHHHHHh
Q 001414 419 LLISSDTGAALDAFKT 434 (1082)
Q Consensus 419 ~~~~~~~~~Al~~l~~ 434 (1082)
.|..|+.+..-..+..
T Consensus 237 ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 237 AYDEGDIEEIKKVLSS 252 (308)
T ss_pred HhccCCHHHHHHHHcC
Confidence 7788888887777665
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.47 E-value=0.00017 Score=52.83 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 786 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~ 786 (1082)
.+++.||++|...|++++|+++|+++++.+|+|+.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666666666666666666666666666666553
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.45 E-value=0.15 Score=55.00 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=47.8
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 001414 387 VQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKG-EFESAHQS 464 (1082)
Q Consensus 387 ~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~ 464 (1082)
...|+++.|..++.++-... ..++.....++ .+++++|......+ +++.|..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La-------------------------~~~yn~G~~l~~~~~~~~~a~~w 58 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELA-------------------------RVCYNIGKSLLSKKDKYEEAVKW 58 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHH-------------------------HHHHHHHHHHHHcCCChHHHHHH
Confidence 56788999999998887665 44555555554 46888999999999 99999999
Q ss_pred HHHHHhc
Q 001414 465 FKDALGD 471 (1082)
Q Consensus 465 ~~~al~~ 471 (1082)
++++++.
T Consensus 59 L~~a~~~ 65 (278)
T PF08631_consen 59 LQRAYDI 65 (278)
T ss_pred HHHHHHH
Confidence 9999874
No 249
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.43 E-value=0.00019 Score=78.58 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+...|..|+.+|.+++.++|+.+..+-.++..++..++|..|+.-+.++++.+|....+|+..|.+....+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHH
Q 001414 186 KRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
+....+.|+. +.+...+..|-
T Consensus 96 ~~~~~l~Pnd-~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 96 EKVKKLAPND-PDATRKIDECN 116 (476)
T ss_pred HHhhhcCcCc-HHHHHHHHHHH
Confidence 8888888887 55555554443
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.027 Score=56.28 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred HhcCChHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc------CCChHHHHHhhhhh
Q 001414 530 EQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLE 597 (1082)
Q Consensus 530 ~~~g~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg~~~ 597 (1082)
....+++.|+++|++++..-... .+.+-..+.++.+...+.+|...+.+-.... |+....+.....+|
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34466777888887776643221 3445556677888888888877766644322 33333455556667
Q ss_pred hcccchHHHHHHHHHhhhcC
Q 001414 598 LKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 598 ~~~g~~~~A~~~~~~al~~~ 617 (1082)
+...+|..|..+|+...+..
T Consensus 201 L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hhHHHHHHHHHHhcchhcCc
Confidence 77778999999988866543
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.39 E-value=0.063 Score=60.68 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+..+...|+..+|+..+...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345567778888888888888888888887754322 222567777788888888888888888877776
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.34 E-value=0.24 Score=53.46 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhh----C------CC----CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 199 IRLGIGLCRYKLG-QLGKARQAFQRALQL----D------PE----NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 199 ~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~------p~----~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
+++.+|......+ +++.|..++++++++ . |+ ...++..++.+++..+......+|...++.+-..
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3444444444444 555555555554444 1 11 1234667788888888777788888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.|+.+.++..-..++...++.+.+...+.+++...................+.. .....|...+...+.
T Consensus 117 ~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 117 YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHH
Confidence 888887776666666667888888888888887654333333333333333333 233456666655554
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0038 Score=60.28 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=86.8
Q ss_pred HHHHHHHhhcCCCHHHH---HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 656 ELYTRVIVQHTSNLYAA---NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 732 (1082)
Q Consensus 656 ~~~~~~l~~~p~~~~a~---~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~ 732 (1082)
....+....+|.+.++. ..++..+.+.+++++|+..++.++....++.+ .+.+-.+||.+.+.+|++++|+..+.
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l--k~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL--KALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH--HHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 33444555566666554 45688899999999999999999865532211 24566889999999999999999877
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 733 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 733 ~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
..-.. .=.+.+....|.++...|+..+|+..|.+++...+++
T Consensus 151 t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 151 TIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 65432 1124456678999999999999999999999998554
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.056 Score=59.36 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQR-ALQLDPENVEALV 235 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~-al~~~p~~~~a~~ 235 (1082)
....+-.+|....+|+.-+.+.+.+-.+ -++. ..+.+.+|.++.+ .|+.++|+..+.. +....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344444566666666666666655443 1222 4556667777776 7777777777777 3344455667777
Q ss_pred HHHHHHHHh------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHH
Q 001414 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1082)
Q Consensus 236 ~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 309 (1082)
.+|.+|... .+....++|+..|.+++..+|+... -.+++.++...|.......-+.++. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~-------------~ 287 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKIG-------------V 287 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHHH-------------H
Confidence 777666432 1234478899999999999865433 3344444444444222111111110 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001414 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (1082)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (1082)
.+.......|.. ......+.+-.++.+.+-.|++++|+..++++++..|...
T Consensus 288 ~l~~llg~kg~~---------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 288 KLSSLLGRKGSL---------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHhhccc---------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111112222211 1223334445566677777888888888888877765543
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.28 Score=56.12 Aligned_cols=231 Identities=18% Similarity=0.114 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----------HIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la----------~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
.+..|..++......-.++-|...|-+.-. +|. ......|+ .+-.--|++++|...|-.+-+.+
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 456677777777777677777666655422 121 12222233 33334478888888775542221
Q ss_pred HHHHHHHH-HH-hcCCHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001414 411 QAFIDLGE-LL-ISSDTGAALDAFKTK---AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485 (1082)
Q Consensus 411 ~~~~~la~-~~-~~~~~~~Al~~l~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 485 (1082)
|+. ++ ..|++-...++++.- ........++.++|..+.....+++|.++|...-....
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~------------ 827 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN------------ 827 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh------------
Confidence 222 22 677777777777762 22333456889999999999999999999987543110
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 565 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 565 (1082)
.... +-..+.|..++.... .-|.+...+-.+|..+...|..++|.+.|-+.- .|. + .......
T Consensus 828 ---~~ec---ly~le~f~~LE~la~---~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---Av~tCv~ 890 (1189)
T KOG2041|consen 828 ---QIEC---LYRLELFGELEVLAR---TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---AVHTCVE 890 (1189)
T ss_pred ---HHHH---HHHHHhhhhHHHHHH---hcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---HHHHHHH
Confidence 0000 011112222221111 234455566666777777777777766554321 111 1 1122344
Q ss_pred hcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 566 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 566 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
.+++.+|.++.+... -|.-.......+.-++..++..+|++..+++
T Consensus 891 LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 555666655544321 1221222222333345556666666666654
No 256
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0039 Score=61.85 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
..++..-|.-++..|+|.+|...|..|+..-...... ..+... .-+++.......
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lk-EkP~e~------------------------eW~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLK-EKPGEP------------------------EWLELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhc-cCCCCh------------------------HHHHHHHhhhHH
Confidence 3567778899999999999999999998632111000 000000 000122335568
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
+.|++.|+...|++-++++....++..+|.+..+|++.|.+....=+..+|...|.+++.++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8899999999999999999999999999999999999999999999999999999999999987444
No 257
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.83 Score=53.15 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=150.9
Q ss_pred hcCChHHHHHHHHHHHHhC--CC----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHH-HHHhhhhhhcccch
Q 001414 531 QIHDTVAASVLYRLILFKY--QD----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA-LSMLGDLELKNDDW 603 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~--p~----~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~ 603 (1082)
..|+...|..++.-.+-.. |. -..+++.+|.++...|.- ..+++...++...+.+.. -..||.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4577888888877766542 11 145788888888777765 788888887766543322 22455555555542
Q ss_pred HHHHHHHHHhhh---cCCC-CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHH-HHHHHHhhcCCCHHHHHHHHHH
Q 001414 604 VKAKETFRAASD---ATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE-LYTRVIVQHTSNLYAANGAGVV 678 (1082)
Q Consensus 604 ~~A~~~~~~al~---~~~~-~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~la~~ 678 (1082)
. .+.|++.-. .... .-..+-++||-+ .+.. . ..+|++ .+.-+-+.....+.--.++|..
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~-mlGt------------~-~~eaiedm~~Ya~ETQHeki~RGl~vGia 510 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLL-MLGT------------A-NQEAIEDMLTYAQETQHEKIIRGLAVGIA 510 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhH-hhCc------------C-cHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Confidence 2 233333322 2111 112344556654 3322 1 234444 3333333333344445567888
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 001414 679 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 758 (1082)
Q Consensus 679 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g 758 (1082)
+.-.|+-+.|..+..+++... ++. -...-.+.+|..|.-.|+..--..++.-++.. .+.|+.-..-+|.-+....
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpi--lR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPI--LRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chh--hhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEec
Confidence 888899999999999887643 111 12335578889999999875555555555543 2333443334444444556
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 759 QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 759 ~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
+++.+..+..-.-+. .|+.++|..|+++- +-+|=.++.+|+.+++-|-...
T Consensus 586 dp~~~~s~V~lLses--~N~HVRyGaA~ALG----------------IaCAGtG~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES--YNPHVRYGAAMALG----------------IACAGTGLKEAINLLEPLTSDP 636 (929)
T ss_pred ChhhchHHHHHHhhh--cChhhhhhHHHHHh----------------hhhcCCCcHHHHHHHhhhhcCh
Confidence 677776666544333 47889999888753 5667778999999999997633
No 258
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.15 E-value=1.3 Score=55.29 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 107 EEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAK----G---EVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
+..|++|+..|++....-|... ++.+..|..++.+ | .+.+|+..|++. .-.|.-+.-|++.|.+|.+.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhh
Confidence 4667788888887777777543 4556666666654 2 366777777654 335566777788888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCh
Q 001414 177 RYSDSLEFYKRALQVHPSCP 196 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~ 196 (1082)
+|++-++.|.-+++..|+.|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCC
Confidence 88888888888888877774
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.14 E-value=0.00062 Score=74.67 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1082)
..+..++..+.|+.|+..|.+++.++|+++..+-.++..+++.++|..|+.-+.++++.+|.. ...|+..|..+..++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHH
Confidence 456677778888889999999999888888888888888888888999988888888888888 6778888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001414 213 LGKARQAFQRALQLDPENVEALVALAVMDL 242 (1082)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1082)
+.+|+..|+....+.|+.+.+...+..+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 888888888888888888887776665543
No 260
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.14 E-value=0.011 Score=65.69 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=121.6
Q ss_pred CHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001414 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1082)
Q Consensus 25 ~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~--y~~~g~~~~~ 102 (1082)
||..|+.+|...|-.++..++++..+..+|+...|..++++|+-. | ++. ++.....+ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 899999999999999999999999999999999999999998521 1 110 00000000 00111111
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCC
Q 001414 103 QREKEEHFILATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (1082)
Q Consensus 103 ~~~k~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a-~~~la~~~~~~g~ 177 (1082)
.--..+.|.. +++.....+.++|-+..|+++++-+++++|. ++.+ ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 0001122332 4455678888999999999999999999998 6544 4455555677888
Q ss_pred hHHHHHHHHHHHHhCC-C---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 001414 178 YSDSLEFYKRALQVHP-S---CPGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p-~---~~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1082)
|+--+.+++....... + ..+..-+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9888888887655211 1 1245678888999999888 7888888888887764
No 261
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.10 E-value=0.15 Score=55.83 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
.|++..|-+-+..+++..|..|......+.+.-..|.|+.|...+..+-..-.....+...+-...+..|+++.|+..-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 47777888888889999999999999999999999999999999877765544445566666677889999999999988
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
-++.-.-.. +.+....+-..-.+|-+++|...|++++.++|....-|
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888766555 44444455566778999999999999999988644333
No 262
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0042 Score=61.65 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLE--------ADRDN----------VPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--------~~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
.++...|+-++..|+|.+|...|..++. ..|.. ...+++.+.|+...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4666778888888888888888887753 23433 34456666667777777777777777777
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 191 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
..|.+ ..+++..|.+....=+..+|...|..+|+++|.-
T Consensus 259 ~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 77766 5566666766666666777777777777766643
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.10 E-value=0.0011 Score=45.26 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
+.+++.+|.+++..|++++|+..|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566677777777777777777777777777764
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.049 Score=56.59 Aligned_cols=152 Identities=18% Similarity=0.076 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1082)
....-+..+.-....|++.+|...|..++...|.+..+.+.+|.++...|+.+.|..++...-.................
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34455666777788888888888888888888888888888888888888888887776653222222100000001122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTG 282 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 282 (1082)
+.+.....+. ..+++.+..+|++..+-+.++..+...|+ .+.|+..+-..++.+- .+..+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222221 23444455677777777777777777777 7777776666666543 23334444444443333
No 265
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.13 Score=52.04 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1082)
.|+++-..++.++|.+-.+|..+-.++-..+ +..+-+.++..++..+|.|...|..+-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776655 5788899999999999999999999989998999888 8899999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cc--HHhHHHHHHHHHHHHHhCCC
Q 001414 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NE--AAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~--~~~~~~A~~~~~~al~~~p~ 266 (1082)
..+..+ -.+|...--|+...+.++.-+.+...+++.+-.|-.+|...-.+.... |- ....+.-+.+..+.+...|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988777 667888888888888899999999999999888877876543332221 11 12356677888899999999
Q ss_pred CHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 001414 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1082)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~~l 295 (1082)
+..+|+.|..++.. .| .+.....+...+.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999988875 44 2334444444443
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.07 E-value=0.00047 Score=46.95 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001414 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1082)
Q Consensus 117 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 148 (1082)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 267
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.03 E-value=1.2 Score=52.83 Aligned_cols=239 Identities=10% Similarity=0.021 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHcCCChHHHHHhhhh
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDL 596 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 596 (1082)
....+..+.......|.+..-...+++++...+.....|+..+...- ..+-...+...+..++...|-...+|...-..
T Consensus 311 ~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallA 390 (881)
T KOG0128|consen 311 KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLA 390 (881)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHH
Confidence 34455556666667788888888888888888888888877766542 33444455566666666666655555443333
Q ss_pred hhcccc-hHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhcc----CchHHhhHHHHHHHHHHHHHhhc-CCCHH
Q 001414 597 ELKNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR----APKLEATHLEKAKELYTRVIVQH-TSNLY 670 (1082)
Q Consensus 597 ~~~~g~-~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~----~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 670 (1082)
+.+.+. ...-...+.+.+... +.|.+-.|+...+..+. .-..-+..|..|...|....... -....
T Consensus 391 leR~re~~~vI~~~l~~~ls~~--------~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~ 462 (881)
T KOG0128|consen 391 LERNREEITVIVQNLEKDLSMT--------VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTE 462 (881)
T ss_pred HHhcCcchhhHHHHHHHHHHHH--------HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 333332 222222333332211 00111101111001110 01112366778888777766552 12233
Q ss_pred HHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHH
Q 001414 671 AANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILL 748 (1082)
Q Consensus 671 a~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~ 748 (1082)
.+...|.+.+ .+++.+.|+.++..+....-+ .....|+....+-...|+...|..++..|+..-..+.+ -.++.
T Consensus 463 ~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 463 VLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLE 538 (881)
T ss_pred HHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHH
Confidence 4445566654 468999999999888765531 23337888888888889999999999999986434443 45555
Q ss_pred HHHHHHHHhccHHHHHHHHH
Q 001414 749 YLARTHYEAEQWQDCKKSLL 768 (1082)
Q Consensus 749 ~La~~~~~~g~~~eA~~~l~ 768 (1082)
..-+.....|.++.......
T Consensus 539 ~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 539 FFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHHHhccccHHHHhhhHH
Confidence 55566666677776655443
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.02 E-value=0.00058 Score=46.49 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001414 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 728 (1082)
Q Consensus 692 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai 728 (1082)
|+++++..| +++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P-----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555554 44555555555555555555543
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.02 E-value=0.55 Score=52.99 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhcCC---
Q 001414 666 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN--- 741 (1082)
Q Consensus 666 p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~-~~~~~--- 741 (1082)
......+..++.+....|+++.|...+.++....+.... ..|.+.+..+.++...|+..+|+..++..+. .+...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345667788899999999999999999999886632211 2578889999999999999999999999888 22211
Q ss_pred ---------------------CC-------HHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 742 ---------------------TD-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 742 ---------------------~~-------~~~~~~La~~~~~~------g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
.. ..++..+|...... +..+++...|..++++.|.....++++|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 01 44555566665566 777888999999999999999999999998
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 788 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 788 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
+.......-.... ...+ .....-+..|+..|-+-...+
T Consensus 302 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 302 NDKLLESDPREKE-ESSQ-EDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHhhhhccc-ccch-hHHHHHHHHHHHHHHHHHhhC
Confidence 6665542221111 1111 233445566666665555544
No 270
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.064 Score=56.19 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHH
Q 001414 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 784 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nl 784 (1082)
.+.-|---|+-|++.++|..|+..|.+.|+.-...++ ...|.+.+-|.+..|+|..|+.-..+++.+.|.+...++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3445566788899999999999999999987433344 56677889999999999999999999999999998877776
Q ss_pred HHH
Q 001414 785 GVA 787 (1082)
Q Consensus 785 a~~ 787 (1082)
|.|
T Consensus 160 Akc 162 (390)
T KOG0551|consen 160 AKC 162 (390)
T ss_pred hHH
Confidence 665
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.077 Score=55.17 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HH-
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LA- 238 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la- 238 (1082)
....-+..+.-....|++.+|...|..++...|.+ ..+.+.++.||...|+.+.|...+...-...... .+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHHHH
Confidence 45566777888899999999999999999999999 8889999999999999999999887643222211 1111 11
Q ss_pred -HHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 001414 239 -VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1082)
Q Consensus 239 -~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 317 (1082)
.++.+... .. -...+.+.+..+|++..+.+.++..+...|+.+.|...+-.++.... ...+..+...+..++..
T Consensus 210 i~ll~qaa~---~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAA---TP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhc---CC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCcHHHHHHHHHHHh
Confidence 22222221 11 12346667778898988888888888888888888887777765421 12223444444444444
Q ss_pred cC
Q 001414 318 KG 319 (1082)
Q Consensus 318 ~g 319 (1082)
.|
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 44
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.97 E-value=0.0014 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.97 E-value=1.4 Score=52.83 Aligned_cols=268 Identities=15% Similarity=0.047 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1082)
.+....-+..+...|...+|+...-.|-++.. -..++-..++-....++.. .+..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~----------aa~lle~~~~~L~~~~~ls---------------ll~~ 401 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEM----------AADLLEQLEWQLFNGSELS---------------LLLA 401 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHH----------HHHHHHhhhhhhhcccchH---------------HHHH
Confidence 56777777888889999999988777754311 1223333344444444333 2222
Q ss_pred HHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCChHHHHHHH
Q 001414 120 ASRIDM-----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--N-------VPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 120 al~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
++..-| .+|...+..+......+++.+|..++.++...-|. . ....-..|.+....|+++.|..+.
T Consensus 402 ~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~la 481 (894)
T COG2909 402 WLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLA 481 (894)
T ss_pred HHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222333 35566777888899999999999999988766443 1 244566788889999999999999
Q ss_pred HHHHHhCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHH--HHHHHHHHHhccHHhHHHHHH
Q 001414 186 KRALQVHPSC----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD----PENVEAL--VALAVMDLQANEAAGIRKGME 255 (1082)
Q Consensus 186 ~~al~~~p~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~--~~la~~~~~~~~~~~~~~A~~ 255 (1082)
+.++..-|.. ...++..+|.+..-.|++.+|+.+...+.+.. .-...+| ...+.+...+|. ..+.+...
T Consensus 482 r~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq-~~~a~~~~ 560 (894)
T COG2909 482 RLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ-VARAEQEK 560 (894)
T ss_pred HHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence 9999988776 23456678888899999999999998887763 2222333 333555666663 11333333
Q ss_pred HHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC---CCCch-HHHHHHHHHHHHcCCHHHHHHH
Q 001414 256 KMQRAFE----IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPTKS-HSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 256 ~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~-~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
.+..... ..|-........+.++...-+++.+..-....+..... .+..+ -.++.++.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3333222 22322222222222222222244444333333322111 11111 1223566666666666666666
Q ss_pred HHHHHH
Q 001414 328 YMASVK 333 (1082)
Q Consensus 328 ~~~al~ 333 (1082)
+..+..
T Consensus 641 l~~~~~ 646 (894)
T COG2909 641 LDELER 646 (894)
T ss_pred HHHHHH
Confidence 666554
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=2.8 Score=55.81 Aligned_cols=409 Identities=13% Similarity=0.079 Sum_probs=222.0
Q ss_pred HHHHHHHHhccHHhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHH
Q 001414 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY----CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (1082)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 311 (1082)
.++.+-++.+. +..|+-++++. ...+. ....+..+-.+|...++++....+....... ......
T Consensus 1388 tLa~aSfrc~~---y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--------~sl~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKA---YARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--------PSLYQQ 1455 (2382)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--------ccHHHH
Confidence 56667777777 89999998885 22211 1233444555888999998887777642211 345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcC
Q 001414 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG-HIYVQLG 390 (1082)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g 390 (1082)
...+...|++..|..+|+++++ ..|+....+.+.-......|.+...+.+.+-.....++...-++.++ .+-.+.+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc
Confidence 6677888999999999999998 66777777888888888999999999988887766665555555443 3346777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---hcCCHH---HHHHHHHhh--------cCCCCCHHHHHHHHHHHHHcC
Q 001414 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL---ISSDTG---AALDAFKTK--------AGEEVPIEVLNNIGVIHFEKG 456 (1082)
Q Consensus 391 ~~~~A~~~l~kal~~~p~~~~~~~~la~~~---~~~~~~---~Al~~l~~~--------~~~~~~~~~~~~la~~~~~~g 456 (1082)
+++.-..++. ..+-.+..+.. +|.++ ...+.- ..++..+.. .........|..+..++...
T Consensus 1533 qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~- 1607 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL- 1607 (2382)
T ss_pred chhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-
Confidence 7776655543 11111111111 34333 111111 122222210 00001111111111111111
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHh--hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001414 457 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ--FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534 (1082)
Q Consensus 457 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 534 (1082)
+.+..+..+.+.-.. .............+........ .....+...+...............+|...|++....|.
T Consensus 1608 el~~~~~~l~~~s~~--~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYD--EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHHHhhccCcc--ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111111111100000 0000000000000000000000 001111111111111112455678999999999999999
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC--------hH---------HHHHhhhhh
Q 001414 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--------PN---------ALSMLGDLE 597 (1082)
Q Consensus 535 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--------~~---------~~~~lg~~~ 597 (1082)
++.|...+-.+.+.. -+.++...|..+...|+...|+..+++.+..+-.+ |. +...++...
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~ 1763 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYL 1763 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHH
Confidence 999998888887765 46889999999999999999999999999765222 11 233344444
Q ss_pred hcccc--hHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhcc-CchHHhhHHHH---HHHHHHHHHhhcCCCHHH
Q 001414 598 LKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR-APKLEATHLEK---AKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 598 ~~~g~--~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~-~~~~~~~~~~~---A~~~~~~~l~~~p~~~~a 671 (1082)
...|+ ...-++.|..+.+..|. ....++.+|. |+...-...+ +.....|++.. ++-.|.+++..+....+.
T Consensus 1764 ~es~n~~s~~ilk~Y~~~~ail~e-we~~hy~l~~--yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1764 EESGNFESKDILKYYHDAKAILPE-WEDKHYHLGK--YYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHhcchhHHHHHHHHHHHHHHccc-ccCceeeHHH--HHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH
Confidence 44444 34556778888887764 2223334553 3333222222 22223466665 677777887776555444
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.027 Score=54.65 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
..++..+...|++++|...++.++....+..-...+-..|+.+++..|.++.|+..+...... .-.+......|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence 344555555555555555555555321111111233445555666666666665555543221 0012234445666666
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 001414 389 LGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p 407 (1082)
.|+..+|+..|.+++...+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALESDA 190 (207)
T ss_pred cCchHHHHHHHHHHHHccC
Confidence 6666666666666665543
No 276
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=3.2 Score=55.23 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHH-HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHh
Q 001414 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (1082)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~-~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~ 122 (1082)
-++|.+=++.|.|..|+-.+|+-..... .... -..+..+-.+|...+..+. ....... ..
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDg-----------V~Gv~~~-r~ 1447 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDG-----------VEGVSAR-RF 1447 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcch-----------hhhHHHH-hh
Confidence 3678888888889999998888411111 1111 2233444446766665551 1111110 12
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001414 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1082)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1082)
.+| .+...-......|++..|..+|+++++.+|+....+.+.-...+..|.+...+...+-.....+.........
T Consensus 1448 a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1448 ADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred cCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHH
Confidence 223 3455555666677888888888888888877777777777777777777777776665554444442222222
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAF 220 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~ 220 (1082)
--.+-|++++++.-....
T Consensus 1524 ~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHhhhcchhhhhhhh
Confidence 233446777666655543
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.83 E-value=0.0022 Score=43.87 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
+++.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.78 E-value=0.086 Score=58.17 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHH
Q 001414 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1082)
.+.-+.+|++|++.+|++ ..+++.+-.+..+....+....-|++++..+|++...|..+.......-..-.+......|
T Consensus 47 ~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345577888888888877 6667777777777778888888888888888888887776555443321101145555555
Q ss_pred HHHHH
Q 001414 258 QRAFE 262 (1082)
Q Consensus 258 ~~al~ 262 (1082)
.+++.
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55544
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.77 E-value=0.003 Score=43.15 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
+|+.+|.+++..|++++|+..|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=1.7 Score=50.19 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1082)
+++|...|-.+-.. -....++...|+|-.+.++++..-. ...+.....++..+|..+.....++.|.++|.
T Consensus 750 feeaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766543222 1233456677888777777654321 12233446789999999999999999999998
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
..-. .-+++.+++....|++- +.+...-|++...+-.+|..+...|.-++|.+.|-+.- .|.
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk- 882 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK- 882 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-
Confidence 7642 23456777777777653 44445568899999999999999999999999886542 221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 410 AQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 468 (1082)
Q Consensus 410 ~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 468 (1082)
..+..+...+++.+|.++.++... +....+....+.-+...++.-+|+...+++
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~l-~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQL-PQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 112223366778888888776322 222233333444566778888888888876
No 281
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.73 E-value=1.4 Score=55.05 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhhCCCCCChhhHHH
Q 001414 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1082)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1082)
-.++...+.|+.|+..|+++....+.....-++.+..|.....+ | .+.+|+..|++.- ..+..+.-|++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHHHh
Confidence 34566667788888888887766655455556777777766543 2 4667777776665 45666777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~l~kal~~~p~~ 409 (1082)
.|.+|...|++++-+++|.-+++.+|..|.+-...-.+-.++ .+...|....--++..-|..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 888899999999999999999988888776544443333332 12334444444455555544
No 282
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.014 Score=60.95 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
..+-.-|.-|+...+|..|...|...|+..-.+ ...|..+|.+.+..|+|..|+.-+.+++..+|.+ ...++.-+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhh
Confidence 345556888888888888888888888764332 5567888888888888988988888888888888 67788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Q 001414 205 LCRYKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
.|++.+.++..|..+.+..+.++-+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888888887766443
No 283
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.32 Score=49.41 Aligned_cols=147 Identities=11% Similarity=0.010 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-hc-----CHHHHHHHHHHHHHHcCCChHHH
Q 001414 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNAL 590 (1082)
Q Consensus 517 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~ 590 (1082)
.+--++...--+....+.++.-+.+...+++.+-.+-.+|...-.+... .| ..+.-+.+..+.+.+.|++..+|
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW 224 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW 224 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 4445555555666666778888888888887776666666544333222 12 23445667778888889999998
Q ss_pred HHhhhhhhc-cc--chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHH-hhcC
Q 001414 591 SMLGDLELK-ND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHT 666 (1082)
Q Consensus 591 ~~lg~~~~~-~g--~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p 666 (1082)
..+.-++.. .| .+..-.......+...+...++.+-.|..+ |.......+...+. -..+|..+|+.+- +.+|
T Consensus 225 nYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~~---~a~~a~~ly~~La~~~Dp 300 (318)
T KOG0530|consen 225 NYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAEE---LARKAVKLYEDLAIKVDP 300 (318)
T ss_pred HHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccchH---HHHHHHHHHHHHhhccCc
Confidence 888777665 44 133344444444433455577777777777 63322222221111 1224677776654 5666
Q ss_pred C
Q 001414 667 S 667 (1082)
Q Consensus 667 ~ 667 (1082)
-
T Consensus 301 i 301 (318)
T KOG0530|consen 301 I 301 (318)
T ss_pred H
Confidence 4
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.55 E-value=0.33 Score=53.15 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=91.7
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLA 680 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~ 680 (1082)
+...|...|..+.... .+.+...||.+ |.... . . ..++.+|..+|.++....-.. ..+.+.+|.+|.
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~-~~~G~-g-v------~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~ 159 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLM-YANGR-G-V------PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL 159 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHH-HhcCC-C-c------ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 3555666665433322 34444555555 44321 0 0 035666666666666554332 334555666655
Q ss_pred hcC-------CchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 001414 681 EKG-------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKMYQNCLRKFYYNTDAQILLY 749 (1082)
Q Consensus 681 ~~~-------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~----g~~~~Ai~~~~~al~~~~~~~~~~~~~~ 749 (1082)
... +...|...|.++.... ++.+.+++|.+|..- .++.+|+.+|.++... .. ....+.
T Consensus 160 ~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~---g~-~~a~~~ 228 (292)
T COG0790 160 SGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ---GD-GAACYN 228 (292)
T ss_pred cChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CC-HHHHHH
Confidence 531 2247888888887765 578888999888663 3888999999998886 22 778888
Q ss_pred HHHHHHHhc---------------cHHHHHHHHHHHHhhCCCC
Q 001414 750 LARTHYEAE---------------QWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 750 La~~~~~~g---------------~~~eA~~~l~~al~~~p~~ 777 (1082)
++ +++..| +...|...+..+....+..
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 88 777666 5555666666655554433
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.54 E-value=0.11 Score=57.91 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=109.3
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CC------------CC---HHHHHHHH
Q 001414 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE---------A-----DR------------DN---VPALLGQA 169 (1082)
Q Consensus 119 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---------~-----~p------------~~---~~a~~~la 169 (1082)
..++.+|.+..+++.++.++..+|++..|..++++++- . ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34578999999999999999999999999999888862 1 11 22 24566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1082)
..+.+.|-+..|+++.+-.+.++|. ++-.+++.+-....+.++++--+..++........ -+..-+..+..++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7888899999999999999999998 77778888888888889988888777765542111 12334455555555
Q ss_pred hccH------------HhHHHHHHHHHHHHHhCCCCH
Q 001414 244 ANEA------------AGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 244 ~~~~------------~~~~~A~~~~~~al~~~p~~~ 268 (1082)
.++. ...+.|-..+.+++...|.-.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5541 112677778888887776443
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.37 E-value=0.43 Score=52.18 Aligned_cols=187 Identities=19% Similarity=0.118 Sum_probs=133.3
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhc----ccc
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 602 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 602 (1082)
..+.+..|...+..+-.. ....+...++.++... .+..+|..+|..+ ....++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccC
Confidence 456777777777776552 2236777777777654 3678899999944 445678899999999887 448
Q ss_pred hHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 001414 603 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 682 (1082)
Q Consensus 603 ~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 682 (1082)
..+|..+|.++.......-..+...+|.+ |.... .. ..-..+...|...|.++.... ++.+...+|.+|..-
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QA----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hh----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999987754224456777777 55531 00 000134568999999888776 778888899888763
Q ss_pred ----CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 001414 683 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---------------NFALAMKMYQNCLRK 737 (1082)
Q Consensus 683 ----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g---------------~~~~Ai~~~~~al~~ 737 (1082)
.++.+|..+|.++.+.. + +...++++ +++..| +...|..+|..+...
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 48899999999999977 3 78899999 777666 555556665555543
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.29 E-value=0.027 Score=49.45 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 001414 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1082)
Q Consensus 46 ~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p 125 (1082)
.|..++.+|++-.|++|++..+..-... . ...-++..-|.++..++....+...|.-.+.-++..|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5788999999999999999986542111 0 111355666888888888777788888899999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 157 (1082)
..+..++.+|.-+-..--|+++....++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888777777788888888887765
No 288
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.26 E-value=2.4 Score=46.78 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=98.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001414 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1082)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1082)
.+..|+.-.|...+..++...|..+......+.+....|.|+.++..+.-+-..-... ......+-.....+|+++.|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHHH
Confidence 4556888888888889999999999999999999999999999999887665544333 233444556677899999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
..-.-++.-.-++++....-+......|- +++++-.+++.+.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhc
Confidence 99888887766677766555555555555 8999999999999987543
No 289
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.095 Score=50.46 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
.++..++..+...|++..|+..+++++..+|.+ ..++..+..+|...|+...|+..|.++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344556666677777777777777777777777 66677777777777777777777776543
No 290
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.18 E-value=0.24 Score=54.62 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=64.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcc---------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001414 219 AFQRALQLDPENVEALVALAVMDLQANE---------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1082)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1082)
-|++.+..+|.+..+|+.+..+.-..-. ....+.-+.+|++|++.+|++...+..+........+.+....
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555566666666666666544433211 1224556667777777777777777776666666666666666
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1082)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1082)
..+.++...+..+.....|...-...+..-.+......|.+++..
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 666666543222221222222222222334566777777776653
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.12 E-value=0.012 Score=39.79 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
+++.+|+++...|++++|+.+|++++..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 292
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=4.2 Score=47.69 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~ 117 (1082)
.-+.....||..|.|++|+..--.+-.. ..+.|+....+..+..+...+.-....-. .+..--++-..++
T Consensus 61 AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~------~~~~iD~rL~~iv 134 (929)
T KOG2062|consen 61 AALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPE------QKSPIDQRLRDIV 134 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCcc------ccCCCCHHHHHHH
Confidence 3467889999999999999987666311 11112211122222222222211111000 0011111234455
Q ss_pred HHHHhcCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 118 NKASRIDMHEPSTWVGKGQLLL--AKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 118 ~~al~~~p~~~~~~~~~a~~~~--~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
++++...-.+-..+..+|..+- +.+-+++| +++.+ +++...++.+.........|. .+.+..+++..-
T Consensus 135 ~rmi~kcl~d~e~~~aiGia~E~~rld~ie~A------il~~d~~~~~~~yll~l~~s~v~~~efR--~~vlr~lv~~y~ 206 (929)
T KOG2062|consen 135 ERMIQKCLDDNEYKQAIGIAFETRRLDIIEEA------ILKSDSVIGNLTYLLELLISLVNNREFR--NKVLRLLVKTYL 206 (929)
T ss_pred HHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHH------hccccccchHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHc
Confidence 5555555555555555554432 22333443 22222 344555566666655533332 233333333322
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
..+..-++.+..|+..+.+...+...+++.++
T Consensus 207 ~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 207 KLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred cCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 22112367899999999999999999999987
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.09 E-value=0.0031 Score=66.07 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1082)
|+.|+.+|..++.++|.....+..++.+++..++...|+.-|..++.++|+....+-..+.....+|++.+|...+..+.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhC
Q 001414 190 QVH 192 (1082)
Q Consensus 190 ~~~ 192 (1082)
+++
T Consensus 210 kld 212 (377)
T KOG1308|consen 210 KLD 212 (377)
T ss_pred hcc
Confidence 443
No 294
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.03 E-value=0.0032 Score=65.97 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
.+.-.+..|.++.|+..|..++.++|.+...+..++.+++.+++...|+.-|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556677889999999999999999998888899999999999999999999999999888 56677788888889999
Q ss_pred HHHHHHHHHHHhhCC
Q 001414 214 GKARQAFQRALQLDP 228 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p 228 (1082)
.+|...|..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999988888764
No 295
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.14 Score=49.18 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
+...++..+...|+++.|+..+.+++..+|.+-.++..+..+|...|+...|+..|.++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455667777788888888888888888888888888888888888888888888877644
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.96 E-value=0.012 Score=40.07 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 775 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 775 (1082)
.+++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455556666666666666666666665555
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.93 E-value=0.012 Score=40.76 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 710 VWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
+|.+||.+|..+|+|++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888887776644
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.90 E-value=0.087 Score=47.72 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhh
Q 001414 707 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g---~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
.....++++|++.... +..+.|.+++..++.-+....-+.+|+|+..+++.|+|+.++++....++..|+|+.+.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4678899999999876 566889999999973222333788999999999999999999999999999999976543
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.90 E-value=0.013 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 740 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 740 (1082)
++++++|.++...|++++|+..|+.+++.||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788888888888888888888888888654
No 300
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.89 E-value=5.6 Score=47.47 Aligned_cols=409 Identities=12% Similarity=0.016 Sum_probs=198.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---HcCCHHHHH
Q 001414 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKAR 217 (1082)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~---~~g~~~~A~ 217 (1082)
.|.-++=+..++.-+..++.+...+..+..++...|++.+-...-..+..+.|.+ +.+|.....-.. ..+....+.
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcchhHHH
Confidence 3445555666666666777777777777777888888777766666666677776 555554433322 235566667
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1082)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1082)
..|++++. +-+++..|...+......++. +...++++....+|.+++..
T Consensus 171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~~------------------------------~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 171 ELFEKALG-DYNSVPIWEEVVNYLVGFGNV------------------------------AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHhcccc------------------------------ccccccchhhhHHHHHHHhh
Confidence 77777763 445666666666655554430 11223333444444444432
Q ss_pred cCCCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCCh----hhHHHHH---HHHHHcCCHHHHHHH--
Q 001414 298 TNHGP----TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI----FPYYGLG---QVQLKLGDFRSALTN-- 364 (1082)
Q Consensus 298 ~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~la---~~~~~~g~~~~A~~~-- 364 (1082)
....- .....+..+-..|...-..++-+.++...+.. |... ..+.... .......+++.|...
T Consensus 220 ~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~ 295 (881)
T KOG0128|consen 220 LGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLA 295 (881)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHH
Confidence 11111 11122333333333333345555555555531 1110 0111111 111123344444443
Q ss_pred -----HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHhhcC
Q 001414 365 -----FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTKAG 437 (1082)
Q Consensus 365 -----~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~--~~~~~~~Al~~l~~~~~ 437 (1082)
+++.++..|.....|..+.......|....-...+++++.-.+.+...|+..+..+ ..+-.+.+...+.+...
T Consensus 296 ~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 296 KILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc
Confidence 33333444444556666666677778888888888888888888888888887766 44444444444443222
Q ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCC
Q 001414 438 EEVPIEVLNNIGVIHFEKGE--FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 515 (1082)
Q Consensus 438 ~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (1082)
.++....+...+.+.+..++ ...-...+.+++..... +......++. .. .+
T Consensus 376 ~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-------------------l~~~~~~~rr---~~-----~~ 428 (881)
T KOG0128|consen 376 SCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-------------------LHNDYLAYRR---RC-----TN 428 (881)
T ss_pred CCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-------------------HHHHHHHHHH---hh-----cc
Confidence 22222222222222222221 12222333333321000 0000000000 00 00
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCChHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHcCCChH-HHHH
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDYVDAYLRLAAIA-KARNNLQLSIELVNEALKVNGKYPN-ALSM 592 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~a~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~-~~~~ 592 (1082)
-.....+-.+ ...+..|...|...... --.....+-..|.+. ...++.+.+..+.+..+.....+.. .|..
T Consensus 429 ~~~s~~~s~l------r~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle 502 (881)
T KOG0128|consen 429 IIDSQDYSSL------RAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLE 502 (881)
T ss_pred cchhhhHHHH------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHH
Confidence 0000000000 11223333333333322 111133334444443 4456778888887777665555444 6777
Q ss_pred hhhhhhcccchHHHHHHHHHhhhcCC
Q 001414 593 LGDLELKNDDWVKAKETFRAASDATD 618 (1082)
Q Consensus 593 lg~~~~~~g~~~~A~~~~~~al~~~~ 618 (1082)
...+-...|+...+..++++++....
T Consensus 503 ~~~lE~~~g~~~~~R~~~R~ay~~~~ 528 (881)
T KOG0128|consen 503 AINLEREYGDGPSARKVLRKAYSQVV 528 (881)
T ss_pred HHhHHHHhCCchhHHHHHHHHHhcCc
Confidence 77777777888888888888776443
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.88 E-value=0.88 Score=46.33 Aligned_cols=48 Identities=33% Similarity=0.498 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001414 143 EVEQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
..++|+..|.+++.+.|.- ..++-.+..+.++.|+|.+-...|.+++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4555555566555555432 33455555566666666666666655543
No 302
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=1.2 Score=50.68 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHH------------hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc----------------
Q 001414 532 IHDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 583 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~------------~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~---------------- 583 (1082)
.+.|.+|...|.-+.. .+|-.++.++.++.+...+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3455666666665544 346668999999999999999999888887776432
Q ss_pred -----CCChH---HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHH
Q 001414 584 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 655 (1082)
Q Consensus 584 -----p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 655 (1082)
|.+.. +++..-..+.+.|-|..|.++.+-++++.|..|+++...+.++ |.... .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2233344456678899999999999999999999998888887 44331 6677777
Q ss_pred HHHHHH-----HhhcCCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhc
Q 001414 656 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 656 ~~~~~~-----l~~~p~~~~a~~~la~~~~~~~~---~~~A~~~~~~~~~~~p 700 (1082)
.+++.. +..-|+-.+.. .+|..|..... -..|...+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 777655 45557665555 66777776654 5788999999998876
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.2 Score=58.08 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001414 880 AEEARRKAEEQKKYL 894 (1082)
Q Consensus 880 ~~~~~~~~~~~~~~~ 894 (1082)
++|.++++++++..+
T Consensus 245 eEEer~~ee~E~~~e 259 (1064)
T KOG1144|consen 245 EEEERRREEEEAQEE 259 (1064)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 304
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=2.7 Score=44.64 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=101.9
Q ss_pred HHHHHHHHhccHHhHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCCCchH-
Q 001414 236 ALAVMDLQANEAAGIRKGMEKMQRAFE----IY--PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN--HGPTKSH- 306 (1082)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~- 306 (1082)
.+..+|...++ |.+|+......+. ++ +.-..++..-...|+...+..+|...+..+....+ ..|....
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45566666666 7777776655543 22 22334555566777777888877777666653322 1222222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCcHHHHH
Q 001414 307 -SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETLK 380 (1082)
Q Consensus 307 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~ 380 (1082)
.-..-|..+....+|..|..||-.+.+.+..-...+.+ +-.+..+-+..+..++--..+ ..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 23334666777788999999998888755433333333 333344445556665544433 445555566777888
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 001414 381 ALGHIYVQL--GQIEKAQELLRKAAKIDPR 408 (1082)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~l~kal~~~p~ 408 (1082)
..+.++.+. .+|..|+..|..-+..+|-
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 888777654 4677888888777766553
No 305
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.76 Score=52.04 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHh------------cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 001414 108 EHFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------ 157 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------ 157 (1082)
.-|.+|...|.-+.. ..|.+...++.++.++..+|+.+-|..+..++|-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 345566666665543 35778889999999999999988887777766521
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHH-----Hh
Q 001414 158 ---DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQ 225 (1082)
Q Consensus 158 ---~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~ 225 (1082)
.|.|- .+++..-..+.+.|-+.-|+++++-+++++|. +|..+.+.+-....+..+|.=-+..++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 23332 23344445566789999999999999999998 66666666666667777887777777665 23
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC
Q 001414 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1082)
.-|+ ...-..+|.+++.......-..|...+.+|+...|.
T Consensus 412 ~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3343 334456677777766655567888889999988874
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.70 E-value=0.018 Score=39.19 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
+++.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666655
No 307
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=3.8 Score=43.61 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=111.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCCChhh--
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFP-- 344 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~-- 344 (1082)
..++.+|+..++|.+|+.+...++. ..+..+...+.+..-..+|+...+..+|...+..+-...+. .|....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4678899999999999998887764 33444555677777888899999999999888877643211 1111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHH
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQIEKAQELL--RKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l--~kal~~~p~~~~~~~~l 416 (1082)
-+.-|..+....+|..|..+|-.+++-+. .-..++..+-.|-...+..++...++ +.+++....+..+...+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 12235566667899999999998887532 12234455555556667777655544 45566667788888888
Q ss_pred HHHH---hcCCHHHHHHHHHh
Q 001414 417 GELL---ISSDTGAALDAFKT 434 (1082)
Q Consensus 417 a~~~---~~~~~~~Al~~l~~ 434 (1082)
+..+ ...++..|+.-|..
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHH
Confidence 8888 45678888888877
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=7.2 Score=46.65 Aligned_cols=250 Identities=12% Similarity=0.062 Sum_probs=140.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 001414 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1082)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1082)
..+++....|.-|+.+...-- .........+...|..++..|++++|...|-+.+... .|..+ ..-+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~V------i~kfLd 409 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEV------IKKFLD 409 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHH------HHHhcC
Confidence 345566666777776655421 1112334667788999999999999999999988532 12221 223344
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001414 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1082)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~ 434 (1082)
.....+-..+++.+.+..-.+.+=-..|-.+|.++++.++-.++..+.- ...-..+.-..+-.++..+-.++|.-+..+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4555666677777777655566666778889999999877665554332 000000111111112244444555544444
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCC
Q 001414 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (1082)
... .. ..+-.++...|+|++|+.++... .
T Consensus 489 ~~~---he---~vl~ille~~~ny~eAl~yi~sl---------------------------------------------p 517 (933)
T KOG2114|consen 489 FKK---HE---WVLDILLEDLHNYEEALRYISSL---------------------------------------------P 517 (933)
T ss_pred hcc---CH---HHHHHHHHHhcCHHHHHHHHhcC---------------------------------------------C
Confidence 222 11 22344566789999999998753 1
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCh-HH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY-VD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~-~~----a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
.+.........|..+.. ..+++-..++-+.+.. ++.. .. ....+-.+..-.+++..-..++....++.|+.++
T Consensus 518 ~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 518 ISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred HHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 12234455666777665 4455555555554432 2111 00 0012223445566777777777777777777665
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.50 E-value=0.18 Score=47.88 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
..++....+-+..++.+.+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3455666677777788888888888777888888888888888888888888888888877777776 666777888887
Q ss_pred HcCCHH
Q 001414 209 KLGQLG 214 (1082)
Q Consensus 209 ~~g~~~ 214 (1082)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 777654
No 310
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=3.7 Score=42.46 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--CCCCChhhHH
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYY 346 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~ 346 (1082)
..++.+++..|.|..|+.+...++. ..+..+.....+..-..+|+...+..++...+..+-...+ -.|....+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567888999999999988887763 3445566667788888889999888888888777654221 1222222222
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHH---HHHHHHHcCCHHHHHHHHH--HHHH-hCCCCHHHHHH
Q 001414 347 --GLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKA---LGHIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFID 415 (1082)
Q Consensus 347 --~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~---la~~~~~~g~~~~A~~~l~--kal~-~~p~~~~~~~~ 415 (1082)
.-|..++...+|..|..+|-.+++-+. .+..+... +-..-...+..++....++ ..++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 235556677789999999988887542 23333222 2222223344454444432 2222 33455677777
Q ss_pred HHHHH---hcCCHHHHHHHHHh
Q 001414 416 LGELL---ISSDTGAALDAFKT 434 (1082)
Q Consensus 416 la~~~---~~~~~~~Al~~l~~ 434 (1082)
.+..+ ...++..|+..|..
T Consensus 289 vaea~~NRsL~df~~aL~qY~~ 310 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSD 310 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhH
Confidence 77777 44577788877776
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.56 Score=44.58 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 649 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 726 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 726 (1082)
+..++|+..|..+-+.+-. -..+....|.+..+.|+...|+..|..+-.-.|-.. +-.-.+.+.-+.++...|-|+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~-~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ-IGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHHHhccccHHH
Confidence 6778888888777666544 344566778999999999999999999887664110 0112244556788889999988
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 001414 727 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 788 (1082)
Q Consensus 727 Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~ 788 (1082)
-....+..-.. .+|--..+.-.||.+-++.|++..|+++|..+.. +.+.|.-..+-+.++
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 76666554322 2333377778899999999999999999998887 334444444445443
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.40 E-value=1.5 Score=44.79 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=118.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 001414 355 LGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALD 430 (1082)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~ 430 (1082)
...+++|+..|++++++.|... .++..+..+++++|++++-...|.+++..-.. + ...+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS--------A--VTrN------- 102 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS--------A--VTRN------- 102 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--------H--Hhcc-------
Confidence 3478888888998888876643 46777888888999998888888877642100 0 0000
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCC
Q 001414 431 AFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 510 (1082)
Q Consensus 431 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (1082)
......+.+...-....+.+--..+|+..+..- ....
T Consensus 103 ---------ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~AL---------------------------------kdAK- 139 (440)
T KOG1464|consen 103 ---------YSEKSINSILDYISTSKNMDLLQEFYETTLDAL---------------------------------KDAK- 139 (440)
T ss_pred ---------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---------------------------------Hhhh-
Confidence 000111111111112222222223333322200 0000
Q ss_pred CcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC------------ChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001414 511 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------------DYVDAYLRLAAIAKARNNLQLSIELVNE 578 (1082)
Q Consensus 511 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------------~~~~a~~~la~~~~~~g~~~eA~~~~~~ 578 (1082)
.......+-..+|.+|...+.+.+-..++++.-..+. .....|..-..+|..+.+...-..+|++
T Consensus 140 ---NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeq 216 (440)
T KOG1464|consen 140 ---NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQ 216 (440)
T ss_pred ---cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHH
Confidence 0001112233578888888888877777777654332 1245566667778888888888888999
Q ss_pred HHHHcCC--ChH----HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 579 ALKVNGK--YPN----ALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 579 al~~~p~--~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
++.+... +|. +.-.=|..+++.|+|++|-.-|-.+++.++.
T Consensus 217 alhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 217 ALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 9887633 233 3334466788899999999999888886543
No 313
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=3.4 Score=46.96 Aligned_cols=251 Identities=16% Similarity=0.111 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1082)
....+.+.......|+++......+..+...|+.+.|+..+...+. ..........++.+|.++.-+.+|..|..++..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555566667778888888888888888888887777777776664 111122345677788888888899999999888
Q ss_pred HHHhhCCCCCChhh-HHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001414 331 SVKEINKPHEFIFP-YYGLG-QVQLK--------LGDFRSALTNFEKV---LEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 331 al~~~~~~~~~~~~-~~~la-~~~~~--------~g~~~~A~~~~~~~---l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
..+. .+...+ |..++ .|++. .|+-+.|-.+++.. +...|.+..+-.. -..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHH
Confidence 8752 222222 22233 33322 22333333333322 2222222111000 0111111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHH---HHHHhhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAAL---DAFKTKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKD 467 (1082)
Q Consensus 398 ~l~kal~~~p~~~~--~~~~la~~~---~~~~~~~Al---~~l~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 467 (1082)
+-.+.- +++..+. .++.++.++ ......+.. ..+........+. -.+..+|.++..+|+...|..+|..
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i 474 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKI 474 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111110 1112222 234444444 222222222 2222211112222 3455679999999999999999998
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 001414 468 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVLYRLIL 546 (1082)
Q Consensus 468 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l 546 (1082)
.++.... ........|.++|.+|.++...|. ..++..++.++-
T Consensus 475 ~~~~e~~------------------------------------~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 475 QVEKESK------------------------------------RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred HHHHHHh------------------------------------hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 8763100 000223457899999999999988 899999999987
Q ss_pred HhCCCh
Q 001414 547 FKYQDY 552 (1082)
Q Consensus 547 ~~~p~~ 552 (1082)
....++
T Consensus 519 ~~~~dY 524 (546)
T KOG3783|consen 519 EYASDY 524 (546)
T ss_pred hhcccc
Confidence 766554
No 314
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=2 Score=44.27 Aligned_cols=215 Identities=14% Similarity=0.088 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001414 309 YNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1082)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1082)
..+++-....+++++|+..|.+.+...... ...-.+...++.+|...|++..--......- ++|....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 567777777788888888888877521100 1112345667777777777655433332221 1111110
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 001414 384 HIYVQLGQIEKAQELLRKAAKIDPR---DAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFES 460 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~~p~---~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 460 (1082)
..+...+.+..++..|. +..-.+.+...+ +++..+....-....+-..+..++++.|.|.+
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~--------iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTAL--------IEWADREKRKFLRLELECKLIYLLYKTGKYSD 143 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 01122233333333332 222222221111 11111100001112445567788899999999
Q ss_pred HHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHH
Q 001414 461 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 540 (1082)
Q Consensus 461 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 540 (1082)
|+......+..-. .....+...+++..-..+|....+..++..
T Consensus 144 alalIn~ll~ElK-------------------------------------k~DDK~~Li~vhllESKvyh~irnv~Kska 186 (421)
T COG5159 144 ALALINPLLHELK-------------------------------------KYDDKINLITVHLLESKVYHEIRNVSKSKA 186 (421)
T ss_pred HHHHHHHHHHHHH-------------------------------------hhcCccceeehhhhhHHHHHHHHhhhhhhh
Confidence 9988876654210 011344556677777778887777777776
Q ss_pred HHHHHHH-----hCCChHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 541 LYRLILF-----KYQDYVDAY--LRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 541 ~~~~~l~-----~~p~~~~a~--~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
.+..+-. -+|....+- +.-|...+...+|..|..+|-++++-.
T Consensus 187 SLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 187 SLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 6665533 234333322 223445667778888888888887744
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.08 E-value=0.2 Score=51.21 Aligned_cols=95 Identities=11% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCchHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhhcCCCC----HHHHHH
Q 001414 683 GQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC-------LRKFYYNTD----AQILLY 749 (1082)
Q Consensus 683 ~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a-------l~~~~~~~~----~~~~~~ 749 (1082)
..+++|+..|.-++-..- +......+.++..+||+|-.+|+.+....++++| +.....|.. ..+++.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 455666666655554320 0111134667888899999988855544444444 443222222 678889
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 750 LARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 750 La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
+|.++++.|++++|+++|.+++...-.+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999865443
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.07 E-value=0.1 Score=39.46 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhh
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
+.+++||.++++.|+|.+|+.+...++++.|+|..+.-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 46789999999999999999999999999999976554
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.82 E-value=0.37 Score=45.90 Aligned_cols=85 Identities=16% Similarity=0.021 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001414 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (1082)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (1082)
..+..+.++-+..+... ++..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|..+.
T Consensus 11 ~gLie~~~~al~~~~~~-----------D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPD-----------DAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHccCChH-----------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 34444555555555444 8888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChH
Q 001414 164 ALLGQACVEFNRGRYS 179 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~ 179 (1082)
+--.++.|++..|+..
T Consensus 80 ~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 80 AKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHcCChH
Confidence 9999999999988754
No 318
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.78 E-value=0.37 Score=42.49 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
|.-++..|++-+|+++.+..+...+++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCC
Confidence 344455555555555555555554444
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.61 E-value=0.15 Score=38.66 Aligned_cols=41 Identities=22% Similarity=0.046 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1082)
.++.+|..+++.|+|.+|..+++.+++..|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777788888888888888888888877766655443
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.60 E-value=0.35 Score=41.69 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCC
Q 001414 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1082)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~ 212 (1082)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+++. ....+..+-.++-.+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555666666666666666666666666666666666666665544 23344444444444444
No 321
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.35 Score=56.16 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 842 HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEA 883 (1082)
Q Consensus 842 ~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 883 (1082)
+.+..+.+|.+-+..-+++++.+++...+.++.++.++++|+
T Consensus 215 gv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 215 GVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEA 256 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444444444444444455544444333
No 322
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.38 E-value=0.18 Score=52.12 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1082)
|+|+.++|..+|..++.+.|.++.++...|.+.-..++.-+|..+|-+++..+|.|..++..++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44555566666666666666666666666666666666666666666666666666666655544
No 323
>PRK10941 hypothetical protein; Provisional
Probab=94.37 E-value=0.35 Score=51.19 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~ 420 (1082)
..++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4557788999999999999999999999999999999999999999999999999999999999998776655543
No 324
>PRK10941 hypothetical protein; Provisional
Probab=94.09 E-value=0.36 Score=51.10 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1082)
.|+.+.+.++.++|+++.-+--+|.+|.+.|.+..|..-++..+...|+.+.+-....
T Consensus 199 ~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 199 LALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 5666666666666666655555666666666666666666666666665555544433
No 325
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.08 E-value=0.081 Score=36.57 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
++..||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996654
No 326
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.79 E-value=8.3 Score=45.10 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 001414 747 LLYLARTHYEAEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 747 ~~~La~~~~~~g~~~eA~~~l~~al~~~ 774 (1082)
+...++.|....++..-+..+.++..+-
T Consensus 819 ~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 819 AQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 3445566666666655555555555443
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=5.9 Score=37.98 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=59.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHH
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYK 209 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~~~ 209 (1082)
+.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+-..|+..|..+-.-.|.. ....++.-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 334444555566666665555444333 2344555555666666666666666554443322 12234445555555
Q ss_pred cCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH
Q 001414 210 LGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1082)
.|-|+.-..-.+-.- ..+|-...+.-.||...++.|+ +..|...|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 555555444333221 1223333444445555555554 5555555544433
No 328
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.63 E-value=0.97 Score=41.22 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001414 161 NVPALLGQACVEFNRGR---YSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~---~~~Al~~~~~al~-~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1082)
.....+.+|.++....+ ..+.+.+++..++ -.|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35667777777776644 5677888888886 5566656677888888889999999999999998888888877654
Q ss_pred HHHH
Q 001414 237 LAVM 240 (1082)
Q Consensus 237 la~~ 240 (1082)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
No 329
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.49 E-value=0.57 Score=40.37 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 001414 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGR 177 (1082)
Q Consensus 113 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~ 177 (1082)
.+..+.+.+..+|.+..+.+.+|..++..|+++.|+..+-.++..+|+. -.+...+-.++-..|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667888899999999999999999999999999999999999988765 3344444444444444
No 330
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.29 E-value=2.7 Score=37.35 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=49.8
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcC---CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRID---MH---------EPSTWVGKGQLLLAKGEVEQASSAFKIVLE 156 (1082)
Q Consensus 89 la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~---p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 156 (1082)
.+..|+.++.-+ +...++.|.+|...+.++.... |. ++..+..++..+...|+|++++...+.+|.
T Consensus 6 Va~aY~aLs~ae--~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 6 VAMAYMALSDAE--RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHH--HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 455566665544 3355677888888888776543 21 123444556666667777666665555543
Q ss_pred h-------CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001414 157 A-------DRDN----VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1082)
Q Consensus 157 ~-------~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1082)
. +.+. +.+.+.+|..+-..|+.++|+..|+.+
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2 1111 223344444444455555555555443
No 331
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.21 E-value=11 Score=39.86 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=111.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1082)
+.+-...|+..+...-+..-..+++++|.+..+++.|+.-.... +.+|...|+++++....... -......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~yr----~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIYR----QSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHHh----hHHHHhh
Confidence 44556667777788888888899999999999999988655444 67788888888765422111 1111111
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1082)
.|...+|.. . .........-..++.|..++|+..+|++.+....+.++. ......+-+|...+....-|..
T Consensus 259 ~~~~~da~~------r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL------R--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh------h--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 0 001111234456888999999999999999988874321 1111233445555555544444
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHH-------------HcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 361 ALTNFEKVLEI-YPDNCETLKALGHIYV-------------QLGQ---IEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~-------------~~g~---~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
....+-+.-.+ -|......+.-+.+-. +.|- --.|++.+.++++.+|.-+..++.+-.
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 43333333222 1333333332222211 1121 235778888888899988877666544
No 332
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.18 E-value=26 Score=42.66 Aligned_cols=213 Identities=10% Similarity=-0.044 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE-LL 420 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~-~~ 420 (1082)
..++..-....+.+.|...+.+.....+-+. .++..+|.-....+...+|...+..+.....++ ..+..... .+
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al 323 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHH
Confidence 3444455567778888888887655443322 234444444444333567777777654332222 22222222 23
Q ss_pred hcCCHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhh
Q 001414 421 ISSDTGAALDAFKTK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 499 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1082)
..+++......+... ..........+-+|..+...|+.++|..+|.++.........+ ....+... .
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~L-----------Aa~~Lg~~-~ 391 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMV-----------AAQRLGEE-Y 391 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHH-----------HHHHcCCC-C
Confidence 778888777777762 2223466778888999888999999999999975421100000 00000000 0
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 500 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
. +....................+..+...|....|...+..++.. .+......++.+....|.++.++....
T Consensus 392 ~----~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 392 P----LKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred C----CCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0 00000000000000112344556666777777777777766654 224555666677777777777666554
No 333
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.02 E-value=19 Score=41.79 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 001414 519 VTVLFNLARLLEQIHDTVAASVLYRL 544 (1082)
Q Consensus 519 ~~~~~~la~~~~~~g~~~~A~~~~~~ 544 (1082)
..+++-.|+.+....++++|.+.|.+
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 34555555555555555555554443
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.88 E-value=2.8 Score=39.26 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
++......+..++++++..++..+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 34444555557788888888887777788888888888888888888888888888877766665 55666777888777
Q ss_pred CCHH
Q 001414 211 GQLG 214 (1082)
Q Consensus 211 g~~~ 214 (1082)
|+..
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7653
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.85 E-value=0.6 Score=46.29 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.++..+|.+|...|+++.|.+.|.++...........+.++.+.++.+..+++.....++.++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555566666666665555555544333333445555556666666666666666555544
No 336
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.85 E-value=0.35 Score=50.02 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=45.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
|.-....|+.++|..+|..++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.+..++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 334455666666666776666666666 566666666666666666677777777777777666666554
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.83 E-value=1.2 Score=41.75 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1082)
++..++.-+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+..
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 78888887778889999999999999999999999999999999888888888889999999888753
No 338
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=22 Score=40.74 Aligned_cols=235 Identities=14% Similarity=0.008 Sum_probs=134.5
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHH
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 589 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 589 (1082)
..|..+...+..+..+...|+.+.|+..+...+. +.. .-+++-+|.++.-..++..|...+..+...+.-+.-.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 4456677777778888888887777777777666 222 3466777888888888888888888877776544444
Q ss_pred HHHhh-hhhhcc--------cchHHHHHHHHHhhh---cCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHH
Q 001414 590 LSMLG-DLELKN--------DDWVKAKETFRAASD---ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 657 (1082)
Q Consensus 590 ~~~lg-~~~~~~--------g~~~~A~~~~~~al~---~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 657 (1082)
|..++ -+++.. |+-+.|..+++.... ..+++.+ .++.-..+|.++
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P-----------------------~E~f~~RKverf 396 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLP-----------------------LEKFIVRKVERF 396 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCc-----------------------hhHHHHHHHHHH
Confidence 44443 333322 233333333332221 1111111 111222233332
Q ss_pred HHHHHhhcCCCHHH--HHHHHHHHHhc--CCchHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 658 YTRVIVQHTSNLYA--ANGAGVVLAEK--GQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQ 732 (1082)
Q Consensus 658 ~~~~l~~~p~~~~a--~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~ 732 (1082)
-.+.- .+|..+.+ +..++.++..- .-.++.. -++...+ .|....+ +..-.++.+|.++..+|+...|...|.
T Consensus 397 ~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 397 VKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred hcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22221 22222222 23333333221 1122222 1122222 2332111 223356778999999999999999999
Q ss_pred HHHHhhcC-CCC----HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCC
Q 001414 733 NCLRKFYY-NTD----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 733 ~al~~~~~-~~~----~~~~~~La~~~~~~g~-~~eA~~~l~~al~~~p~ 776 (1082)
.++++... ..+ |.++|-||-.|...|. ..+|..++.+|...+.+
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 99965322 222 8899999999999988 99999999999987743
No 339
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.67 E-value=3.4 Score=36.76 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=66.4
Q ss_pred HHHhcCCchHHHHHHHHHHHHh---cCCCCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----CCC---
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAA---SGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD--- 743 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~----~~~--- 743 (1082)
-....|-|.+|...++++.+.. |...-.+ +..++-.|+..+..+|+|++++..-..+|.-|.. ..+
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 3345577888888888887765 2111111 3456677888899999999999999999976632 233
Q ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 744 --AQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 744 --~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
..+.+..+.++...|+.++|++.|+.+-++
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445567788888999999999999988764
No 340
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.67 E-value=0.18 Score=33.01 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 710 VWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
+++++|.++..+|+++.|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555555555555555555555555543
No 341
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=1.5 Score=51.15 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 001414 865 QQNRQRQEAARQAA 878 (1082)
Q Consensus 865 ~~~~~~~~~~~~~~ 878 (1082)
+.+|+++|.+|+..
T Consensus 357 kkererqEqErk~q 370 (1118)
T KOG1029|consen 357 KKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
No 342
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.55 E-value=8.2 Score=44.51 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1082)
+.+..++..+.....+.-|.+.|.++-. .-.+.+++...+++.+|...-++.-+. -+.+++-.|..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqw 813 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQW 813 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHH
Confidence 4455555555566666666666665532 223456677777888877766553222 23466667777
Q ss_pred HHHcCCHHHHHHHHHHH
Q 001414 386 YVQLGQIEKAQELLRKA 402 (1082)
Q Consensus 386 ~~~~g~~~~A~~~l~ka 402 (1082)
+....++++|.+.|-++
T Consensus 814 LAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhhhHHHHHHHHHHh
Confidence 77777777777776655
No 343
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.43 E-value=1.5 Score=43.59 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCH----H
Q 001414 670 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA----Q 745 (1082)
Q Consensus 670 ~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~----~ 745 (1082)
.++..+|..|...|+++.|++.|.++++...+. ....++++++..+.+..|++.....+..++-.....+.+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 467789999999999999999999999876321 1356788999999999999999999999998775454543 3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
+-.+-|..+...++|..|-+.|..+..-...
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 3445677788889999999999887765543
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.42 E-value=0.22 Score=32.64 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
+++.+|.++...|+++.|...|..+++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555556666666666666666655555543
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.37 E-value=14 Score=39.19 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---CCCCHHHHHH
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY---YNTDAQILLY 749 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~---~~~~~~~~~~ 749 (1082)
..++.+-.+.|+..+|++.|+.+..-.|- ...-.++.||...++...-|.... .++.+|. .|..+.+-|.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl---~t~lniheNLiEalLE~QAYADvq----avLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPL---LTMLNIHENLLEALLELQAYADVQ----AVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccccCcchHHHHHH
Confidence 34566666667777777777666655541 123345555655555544443332 2233321 2333333332
Q ss_pred HHHHH-------------HHhcc---HHHHHHHHHHHHhhCCCCcchhh
Q 001414 750 LARTH-------------YEAEQ---WQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 750 La~~~-------------~~~g~---~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
-+..- .+.|- -..|++...+|++.+|.-|....
T Consensus 352 aALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 352 AALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHH
Confidence 22111 11221 23588889999999998765443
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.28 E-value=1.4 Score=45.06 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=78.3
Q ss_pred HHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCC--
Q 001414 49 EYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH-- 126 (1082)
Q Consensus 49 ~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~-- 126 (1082)
.|..-..+++|+..+.-|+-... .........+.++..+||+|-.+|+.+ .-...+..|+..|.++......
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~----~E~~fl~~Al~~y~~a~~~e~~~~ 159 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEE----NEKRFLRKALEFYEEAYENEDFPI 159 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHHHHHHhCcCCC
Confidence 45556677888887776643211 011122355677888999999888755 3356788999999999866532
Q ss_pred ----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 001414 127 ----EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQAC 170 (1082)
Q Consensus 127 ----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~ 170 (1082)
.....+.+|.+..+.|++++|..+|.+++.....+ ...+..+|.
T Consensus 160 ~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 160 EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 24567778999999999999999999988754332 234555444
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.93 E-value=37 Score=41.40 Aligned_cols=316 Identities=9% Similarity=-0.003 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001414 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1082)
..++.-|...++.|++..+..+......... ...+-+..+..+-.. .. ..-+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL--------------~~yl~y~~L~~~l~~-------~~----~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPL--------------YPYLEYRQLTQDLMN-------QP----AVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCc--------------HhHHHHHHHHhcccc-------CC----HHHHHHH
Confidence 4678889999999999999888887532211 111222222111111 01 1133344
Q ss_pred HhcCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001414 121 SRIDMHEPSTWVGKGQLL---LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1082)
Q Consensus 121 l~~~p~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1082)
+..+|+.|.....+...+ ...+++..-+.++ ...|.+.......+..+...|+-.+|.....++....... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 556677776655554433 2345555544422 2347777777777778888999888877777765544332 2
Q ss_pred HHHHHHHHHHH------------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHhHHHHHHHHH
Q 001414 198 AIRLGIGLCRY------------------KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQ 258 (1082)
Q Consensus 198 ~~~~~lg~~~~------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~A~~~~~ 258 (1082)
...-.+-..+. ..|+...|......+ |..... ++...... .+ ......
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~---p~~~~~--- 230 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQND---PNTVET--- 230 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHC---HHHHHH---
Confidence 22222223333 333333333332221 111111 01000000 00 111111
Q ss_pred HHHHhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 259 RAFEIY-PYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (1082)
Q Consensus 259 ~al~~~-p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 335 (1082)
.+... |.. ......++..-....+.+.|..++..........+ ....++..+|......+...+|..++..+...
T Consensus 231 -~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~- 308 (644)
T PRK11619 231 -FARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR- 308 (644)
T ss_pred -HhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-
Confidence 11111 111 11122333334455666777777776543322221 11233444444444443356677777665431
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 336 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
.......-....+.+..++++.+...+..+-..........+.+|..+...|+.++|..+|.++..
T Consensus 309 ---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 309 ---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 112222233334555778888777777775444445667888888888888888888888888743
No 348
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.77 E-value=13 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 710 VWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
.-+-+-.+++.-|+|. -|.++++.
T Consensus 748 fkFGlTKVFFr~GKFa----EFDqiMks 771 (1259)
T KOG0163|consen 748 FKFGLTKVFFRPGKFA----EFDQIMKS 771 (1259)
T ss_pred ccccceeEeecCcchH----HHHHHHhc
Confidence 3344556677777774 46666664
No 349
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=2.7 Score=48.17 Aligned_cols=128 Identities=23% Similarity=0.172 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H
Q 001414 112 LATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-A 188 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-a 188 (1082)
-++..+...+.++|.++..++.. ...+...+....+...+...+..+|.++.+...++..+...|..-.++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666677888888775554 67777778888999999999999999999999999988888777776666555 7
Q ss_pred HHhCCCChHHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001414 189 LQVHPSCPGAIR------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 189 l~~~p~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
....|.+ ..+. +.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7778887 3332 2357788888889999999999999999886665554444
No 350
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=30 Score=39.56 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHhcCCChh--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001414 23 PRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTYL 96 (1082)
Q Consensus 23 ~~~~~~l~~~l~~e~~~~~--~~~~~a~~y~~~g~~~~A~~~le~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~~~ 96 (1082)
.+|...+..+......+.. +-+.+...||..|.|++|+..--++-.. ..+.||..-.+..+.++.....-...-
T Consensus 40 sddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~ 119 (926)
T COG5116 40 SDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIG 119 (926)
T ss_pred hchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhC
Confidence 3344444444444555555 6678899999999999999987666432 222233333344555544443333333
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q 001414 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFN 174 (1082)
Q Consensus 97 g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~ 174 (1082)
|+.+.- +.. -...++.....+-.....-+.+|.... |. -+..++.+++-..+. ...++.++.....
T Consensus 120 ~~~d~i----D~~---l~~v~e~i~~kc~~~se~~~~lgIa~e--g~---rldiie~~l~~~~d~di~~ylL~Lait~v~ 187 (926)
T COG5116 120 GDKDII----DRI---LDFVLEVIGAKCVDDSEIGYLLGIAAE--GL---RLDIIEKYLSDGNDCDIINYLLDLAITLVE 187 (926)
T ss_pred CCcccc----hHH---HHHHHHHHHHHHhhHHHHHHHHHHHHH--HH---HHHHHHHHHhCCCcccHHHHHHHHHHHHhh
Confidence 332110 111 111222222222222233333333322 11 123444445433222 3455666665555
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
...+.. +++...+...|+.+..-++.++.|+..+++-..|...+++..+.+.
T Consensus 188 ~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 188 EEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 444433 4566667777766444578889999999999999999999887654
No 351
>PRK12798 chemotaxis protein; Reviewed
Probab=91.47 E-value=26 Score=39.14 Aligned_cols=191 Identities=15% Similarity=-0.001 Sum_probs=122.2
Q ss_pred ChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhc
Q 001414 586 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 665 (1082)
Q Consensus 586 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 665 (1082)
+.+....-|..-+-.|+..++.+.+..+....-+.....++.|.....+.. .+..+|+.+|+.+--.-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 344444555555667888888888876655433334444444443323333 67889999999988888
Q ss_pred CCCHH--HHHHH-HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001414 666 TSNLY--AANGA-GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 742 (1082)
Q Consensus 666 p~~~~--a~~~l-a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~ 742 (1082)
|.... +.... ..+....|+.+++..+-.+.+.....|.|..+..-.+..+.+ ..++-. -...+..++..+....
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~--~~~d~~-~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVV--RLDDEI-RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH--hccccc-cHHHHHHHHHhcCchh
Confidence 87432 33333 344467899999999999998888766655444333333333 333111 2234677777654444
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHH
Q 001414 743 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 792 (1082)
Q Consensus 743 ~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~ 792 (1082)
-..+|..+++.-.-.|+.+-|.-.-.+++.+... ...-.-.+..|+..+
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa 304 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAA 304 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHH
Confidence 4788999999999999999999999999999743 444444555555443
No 352
>PF13041 PPR_2: PPR repeat family
Probab=91.37 E-value=0.83 Score=34.28 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
+..+|..+-+.|.+.|++++|.++|+.+.+. +-.++..++..+-.+++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 3567888888888888999999998888876 56777777777766554
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.27 E-value=14 Score=36.95 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=53.5
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhccH
Q 001414 683 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY--NTDAQILLYLARTHYEAEQW 760 (1082)
Q Consensus 683 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~--~~~~~~~~~La~~~~~~g~~ 760 (1082)
-.-..|...|-++-.. | ..+++...+.||..|. ..+..+|+.+|-++++.+.. ..+++++..|+.++++.|++
T Consensus 120 ~~d~~A~~~fL~~E~~-~---~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 120 FGDQEALRRFLQLEGT-P---ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred cCcHHHHHHHHHHcCC-C---CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445666666554332 2 1356788888887777 46788888888888887543 23488888888888888888
Q ss_pred HHHH
Q 001414 761 QDCK 764 (1082)
Q Consensus 761 ~eA~ 764 (1082)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 354
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.95 E-value=0.54 Score=48.90 Aligned_cols=89 Identities=10% Similarity=0.163 Sum_probs=69.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001414 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
|.++....|+++..|...+......|-|.+--.+|.++++.+|.+ .++|.. .+.-+...++++.++..|.+++..+|+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 444455567888888888887778888888888888889888888 566655 556677788889999999999999998
Q ss_pred CHHHHHHHHHH
Q 001414 230 NVEALVALAVM 240 (1082)
Q Consensus 230 ~~~a~~~la~~ 240 (1082)
++..|...-.+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 88887765543
No 355
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=9.4 Score=43.98 Aligned_cols=131 Identities=17% Similarity=0.051 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 145 EQASSAFKIVLEADRDNVPALLGQ--ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~l--a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 222 (1082)
.-++..+..-+..+|.++..++.. ...+...+....+.-.+..++..+|.. ...+..++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 335666666667788887765443 666677888888999999999999998 66788888888888877777766665
Q ss_pred -HHhhCCCCHHHHHHH------HHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 223 -ALQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 223 -al~~~p~~~~a~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
+....|.+......+ +.+....+. ..++...+.++....|.++.+...+.....
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 888889888776555 666666666 777778888888888888776666655533
No 356
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.50 E-value=0.68 Score=51.66 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=49.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001414 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1082)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1082)
..+.+..|+..|.+++...|.....+..+|.++++. |+.-.|+.-...++.++|.. ...++.++.++..++++.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHh
Confidence 334455566666666666666666665555555543 33444555555555556555 45566666666666666666
Q ss_pred HHHHHHHHhhCC
Q 001414 217 RQAFQRALQLDP 228 (1082)
Q Consensus 217 ~~~~~~al~~~p 228 (1082)
+.+...+...+|
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 665555555555
No 357
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.12 E-value=0.49 Score=49.19 Aligned_cols=78 Identities=13% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhH
Q 001414 705 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY-LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 783 (1082)
Q Consensus 705 ~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~-La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~n 783 (1082)
+.++..|...++...+.|.|.+--..|..|+++ +|.++++|.. -+.-++-.++.+.|+..|.+++.++|.+|.+|+-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 378999999999999999999999999999998 6888888776 4556777899999999999999999999999865
Q ss_pred H
Q 001414 784 A 784 (1082)
Q Consensus 784 l 784 (1082)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
No 358
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.63 E-value=0.72 Score=32.77 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
.++.+||.+|..+|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
No 359
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.60 E-value=0.52 Score=46.96 Aligned_cols=59 Identities=29% Similarity=0.480 Sum_probs=37.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
.....++.+.|.+.|.+++.+.|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445566666666666666666666 5556666666666666666666666666666654
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.58 E-value=1.9 Score=35.37 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 001414 712 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAI 771 (1082)
Q Consensus 712 ~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~La~~~~~~g~~~eA~~~l~~al 771 (1082)
..-|.-++.+.+..+|+..+.+++++..++++ ..++-+|..+|...|++.+++++...=+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788899999999999998766555 6677788899999999999887754433
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.34 E-value=2.5 Score=36.88 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=44.6
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCH
Q 001414 680 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 744 (1082)
Q Consensus 680 ~~~~~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 744 (1082)
...|++..|++.+.+..+....+.... ...+..++|.++...|++++|+..++.++.......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 356788888888877777664322111 24566778888888888888888888888776555553
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.27 E-value=33 Score=36.47 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
|..-...|+.+- +.-...-.++..+..+|..++..|++..|...|-.. +++.+... +.-++
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~-------------~~ll~ 129 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAY-------------VMLLE 129 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHH-------------HHHHH
Confidence 444555666665 322222356777778888888888877777665322 11111100 00011
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC----------CHHHH--HHHHHHHHHhccHHh
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEAL--VALAVMDLQANEAAG 249 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~--~~la~~~~~~~~~~~ 249 (1082)
.....-.|.............|..+|+...|...+...++. .|. ....+ ..+-..-+..++...
T Consensus 130 ~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~ 209 (260)
T PF04190_consen 130 EWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPL 209 (260)
T ss_dssp HHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHH
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHH
Confidence 11223345542333333445567778888888877776655 331 22221 112222233333333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1082)
+..-...|...++.+|.....+..+|..|+...
T Consensus 210 F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 210 FKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 444455555555566666666777777776543
No 363
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=33 Score=38.06 Aligned_cols=162 Identities=9% Similarity=0.026 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK------------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-- 177 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-- 177 (1082)
.++.+=.+.+..+|....+|..+-.++... .-++.-+.+...++..+|++..+|..+..++.+.+.
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 677777778888998877776653333222 235666777788889999999999999999887764
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh------cc--
Q 001414 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK---LGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE-- 246 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~-- 246 (1082)
+..=+.++.++++.+|.+.-...+..-..-.. .....+=+.+..+++.-++.|..+|.....+.... |+
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~ 206 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFM 206 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccC
Confidence 57888999999999998733322222222222 22355567788888888999999988877666532 21
Q ss_pred -HHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001414 247 -AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1082)
Q Consensus 247 -~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1082)
..-...-+.....++-.+|.+..+|.+
T Consensus 207 ~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 207 PKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223455666777777778888777765
No 364
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.55 E-value=2.1 Score=47.98 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1082)
......|+..|.+++...|.....+..++.++++. |+.-.|+.-+..++.++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566899999999999999999999999988886 567778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001414 184 FYKRALQVHPSC 195 (1082)
Q Consensus 184 ~~~~al~~~p~~ 195 (1082)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 998888888866
No 365
>PF12854 PPR_1: PPR repeat
Probab=88.52 E-value=0.9 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001414 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1082)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~le~a 66 (1082)
.+.-.|..+...|++.|++++|.++|+.+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 35568999999999999999999999875
No 366
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.41 E-value=13 Score=40.93 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=18.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 749 YLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 749 ~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
.-|.+.|+.|+-++|.++|+.+...
T Consensus 272 LQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 272 LQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3477788888888888888776543
No 367
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.39 E-value=0.68 Score=46.18 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=48.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
.....++.+.|.+.|.+++...|.....|+++|....+.|+++.|...|.+.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445677778888888888888888888888888888888888888888888888877644
No 368
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=88.26 E-value=3.3 Score=52.08 Aligned_cols=168 Identities=20% Similarity=0.184 Sum_probs=118.1
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 001414 345 YYGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRD 409 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~--------~p~~ 409 (1082)
....|+.....|.+.+|.. .+... -..+|.....+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455667777778877776 55533 3457888999999999999999999999988877543 2455
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHh---------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001414 410 AQAFIDLGELL-ISSDTGAALDAFKT---------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479 (1082)
Q Consensus 410 ~~~~~~la~~~-~~~~~~~Al~~l~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 479 (1082)
...+..++... ..+....|+..+.+ ....|....+..+++.++...++++.|+.+++.|+...... .
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--~- 1091 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--L- 1091 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--c-
Confidence 56666676555 66677777777766 22355566677889999999999999999999998732100 0
Q ss_pred cccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001414 480 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 547 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 547 (1082)
.+..-.....+..+++++...+++..|....+....
T Consensus 1092 --------------------------------g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1092 --------------------------------GPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --------------------------------CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 001123455667778888888888877776666544
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.13 E-value=24 Score=40.73 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
-...+..|+++.+..+.... ..-|.- ..-....+..+.++|.++.|+.+.. + +..++.+ ..++|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeL---Al~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFEL---ALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHH---HHhcCCH
Confidence 34455566777766665411 112222 2233445555556666666655432 1 2334433 3456666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
+.|.+.... .+++..|..||...+..|+ ++-|..+|+++-. +..|..+|...|+.+...++...
T Consensus 335 ~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKE-----LDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCC-----CSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHh-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHH
Confidence 666654432 2355667777777777766 6666666654321 22344445555555444444443
Q ss_pred H
Q 001414 294 A 294 (1082)
Q Consensus 294 ~ 294 (1082)
+
T Consensus 399 a 399 (443)
T PF04053_consen 399 A 399 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 370
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=47 Score=36.65 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHhhc-CCCHH--------HHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHH
Q 001414 649 THLEKAKELYTRVIVQH-TSNLY--------AANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVY 718 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~-p~~~~--------a~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~la~~~ 718 (1082)
+.+.+|..+-+..+... -.|-. .++.+..++...|+...-...+...+.... ...........+.|-.+|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 77888887776655322 12222 334445556666776666666665554431 111112233445566888
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhH
Q 001414 719 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 783 (1082)
Q Consensus 719 ~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~n 783 (1082)
+..+.|+.|-....+..--....++ +..+|++|++..-.++|..|.++|..|+.+.|++..+-|-
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~ 286 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR 286 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence 8889999998886665421111122 6778899999999999999999999999999997665543
No 371
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.91 E-value=1 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
..++.+||.+|...|++.+|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 372
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=75 Score=38.62 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=34.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 615 (1082)
+...++...+++.++.+.+. ..+.+|..|..+-.++...+..+.-.+...+++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~---~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCER---LGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHH---hCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 44556777788888777766 4455677777777777777755555555544443
No 373
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.53 E-value=6.7 Score=49.57 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHhcCCCC
Q 001414 1011 RLAAAGLED 1019 (1082)
Q Consensus 1011 ~~~~~~~~~ 1019 (1082)
.|-..|+.|
T Consensus 602 ~~~r~~~~~ 610 (1021)
T PTZ00266 602 DSMRSGVHD 610 (1021)
T ss_pred hhhhcccch
Confidence 444444433
No 374
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.39 E-value=4.8 Score=50.74 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK----- 333 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 333 (1082)
.|.....+..|+.++...|+++.|+..-.++.- .+...+.....+..++...+..++...|+..+.++..
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 444444555555555555555555554444431 1223344455555555555555566666665555543
Q ss_pred hhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
..+..|........++.++...++++.|+.+++.++... | .....+..++.++...+++..|+...+....
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 112345555555566666666666666666666665532 2 2344555666666666666666665555443
No 375
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=3.2 Score=43.29 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001414 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1082)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1082)
++..|.....+.+.++|.++.-+--+|.+|.+.|.+.-|+..+...+...|+.+.+-...+..
T Consensus 196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334888888888888888888888888888888888888888888888888887776655543
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.10 E-value=64 Score=39.25 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---H--
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL---L-- 420 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~---~-- 420 (1082)
...+++-.|+|+.|+.++-+ .+.+. .+++.++..+. |-..-.-..-...+..++.++.. ++++.+ |
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~--gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~ 336 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYY--GLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR 336 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHT--T-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHc--CCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH
Confidence 45778889999999999877 22222 34444444443 32222222225555555544322 333322 2
Q ss_pred --hcCCHHHHHHHHHhh
Q 001414 421 --ISSDTGAALDAFKTK 435 (1082)
Q Consensus 421 --~~~~~~~Al~~l~~~ 435 (1082)
...++..|+.++--.
T Consensus 337 ~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 337 SFEITDPREALQYLYLI 353 (613)
T ss_dssp TTTTT-HHHHHHHHHGG
T ss_pred HHhccCHHHHHHHHHHH
Confidence 667888898888773
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=53 Score=36.25 Aligned_cols=104 Identities=17% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CcHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYP--DNCET 378 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p--~~~~~ 378 (1082)
..|+.+..+|...|+...-...+...+.... ...........|-..|+..+.|+.|-....+..- ... ..+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 5677777788888887666666666554221 1122233445567788888888888887766541 111 23457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
++.+|.+..-+++|..|.++|-.++...|.+
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 7888999999999999999999999999974
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.93 E-value=15 Score=42.44 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHhcCChHHHHHHHH--HHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHH
Q 001414 529 LEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606 (1082)
Q Consensus 529 ~~~~g~~~~A~~~~~--~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 606 (1082)
....++++.+..+.. .++..-| ..-...++..+.+.|-++.|+.+.+ ++...+.|+ ++.|+.+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHH
Confidence 334577777666554 2221122 3345566666777777777765432 355555544 566777776
Q ss_pred HHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCch
Q 001414 607 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 686 (1082)
Q Consensus 607 ~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~ 686 (1082)
.+..+. ..+...|-.||.. .+.. |+++-|...|.++-. +.+|..+|.-.|+.+
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~-AL~~------------g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDE-ALRQ------------GNIELAEECYQKAKD--------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHH-HHHT------------TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred HHHHHh------cCcHHHHHHHHHH-HHHc------------CCHHHHHHHHHhhcC--------ccccHHHHHHhCCHH
Confidence 665432 1255577777777 6666 777777777765422 235566666666655
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 687 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 733 (1082)
Q Consensus 687 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~ 733 (1082)
.=..+...+.... + +...-++++..|++++.++++..
T Consensus 391 ~L~kl~~~a~~~~------~----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERG------D----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-----------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------C----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444443322 1 12222455556777666666544
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.38 E-value=3.2 Score=45.26 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=61.2
Q ss_pred ChhHHHHH----HHHHHHcCCHHHHHHHHHhcCCCchhhhhhh--------h-HHHHHHHHHHHHHHHHHhchhhhhhhh
Q 001414 39 PLDLWLII----AREYFKQGKVEQFRQILEEGSSPEIDEYYAD--------V-RYERIAILNALGVYYTYLGKIETKQRE 105 (1082)
Q Consensus 39 ~~~~~~~~----a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~--------~-~~~~~~~~~~la~~y~~~g~~~~~~~~ 105 (1082)
..+-|+.. |..+|+||+|..|.--|..+++.+....+.. + ..-..-+-..|..||+.+++.+
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpd----- 245 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPD----- 245 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCc-----
Confidence 34556654 5678999999887777666654322211110 0 0011123345666677666666
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKI 153 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 153 (1082)
-|+...-+.+-++|.....++..|.++-...+|.+|...+..
T Consensus 246 ------lALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 246 ------LALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred ------hHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666776666666666666666666666655543
No 380
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.23 E-value=67 Score=36.61 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001414 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1082)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1082)
.|-+-.++..+..++.......-...++.+++....+- ..++.++.||... ..++-...|++.++.+-++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34444555555555555555566666777777665543 4567777887777 55666777777777777777766677
Q ss_pred HHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 238 AVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
+..|.. ++ ...+..+|.+++-.
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHHH
Confidence 766665 34 56666677666543
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.60 E-value=7.5 Score=32.05 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1082)
.+.-|.-++...+..+|+..|.++++..++....+..||.+.....+.+.+.+.+.+..+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777778888888888887777777666666555444443446666665443
No 382
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.03 E-value=0.75 Score=54.30 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhCCC
Q 001414 814 ENAVRVFSHLSAASN 828 (1082)
Q Consensus 814 ~~A~~~f~~l~~~~~ 828 (1082)
.+|+.-|.++...+.
T Consensus 1257 ~~aIh~FD~ft~~~~ 1271 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGG 1271 (1516)
T ss_pred HHHHhhhhhheeccc
Confidence 366777777765443
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.02 E-value=17 Score=38.67 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
++..++..+...|+++.+...+++.+..+|-+-..|..+-..|+..|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555444
No 384
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.98 E-value=19 Score=39.67 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=58.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 168 QACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~--------p~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
-|..++++++|..|.--|..+|.+. |.. ...+--.+..||..+++.+.|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3455666666666666666665542 111 12234457889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhccHHhHHHHHHH
Q 001414 231 VEALVALAVMDLQANEAAGIRKGMEK 256 (1082)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1082)
...++..|.+...... |.+|-..
T Consensus 262 frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHH
Confidence 8888888887777666 5555443
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.56 E-value=6.4 Score=34.30 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=30.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001414 138 LLAKGEVEQASSAFKIVLEADR----DN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1082)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p----~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1082)
.+..|+|..|+..+.+.+.... .. ..+++.+|.+....|++++|+..++.++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4556666666655555544321 11 2345556666666666666666666666554
No 386
>PF13041 PPR_2: PPR repeat family
Probab=84.45 E-value=2.8 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=32.2
Q ss_pred hHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhH
Q 001414 587 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631 (1082)
Q Consensus 587 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~ 631 (1082)
..+|..+...+.+.|++++|.+.|+++.+..-.++.+++..+-+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777777777888888888888888777666677776665544
No 387
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.27 E-value=2.1 Score=29.87 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
++|..||.+-+..++|.+|+.-|++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999998875
No 388
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.61 E-value=46 Score=32.46 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhc-----ccchHHHHHHHHHhhh
Q 001414 553 VDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK-----NDDWVKAKETFRAASD 615 (1082)
Q Consensus 553 ~~a~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~ 615 (1082)
+++-..|+..+. .+.+++.|..+|+.--.-+ ..+...+.+|..++. .++...|+..|..+-.
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD 101 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence 344444444432 2345555555554432222 223344444443322 2245555555555444
No 389
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.59 E-value=35 Score=37.84 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=100.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----C
Q 001414 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFNR----G 176 (1082)
Q Consensus 103 ~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g 176 (1082)
...+...++.-+.+...+++.+|++..+|..+..++.+.+. +..=+.+++++++.+|.|..+|..+=.+.... .
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 44566678888999999999999999999999999998874 68889999999999999988885544443332 2
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
...+=+.+..+++.-++.+ -.+|.....++-. .|+ ...-+.....++-.+|++..+|+..-
T Consensus 164 ~~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~r 236 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHR 236 (421)
T ss_pred cchhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehH
Confidence 3567788899999988888 4555555444432 231 22344556667778999999988733
No 390
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.46 E-value=1.6 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 001414 710 VWINLAHVYFAQGNFALAMKMY 731 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~ 731 (1082)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555555444
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.45 E-value=66 Score=34.21 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~--~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
-.++..+..+|..+.+.|++..|..+|-.. ++..... .+....... -.|.....+...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTK---------------GYPSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHh---------------cCCcchhHHHHH
Confidence 357889999999999999998888776432 2222211 122222222 234444444333
Q ss_pred h-hhhhcccchHHHHHHHHHhhhc----CCC--------CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHH
Q 001414 594 G-DLELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 660 (1082)
Q Consensus 594 g-~~~~~~g~~~~A~~~~~~al~~----~~~--------~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 660 (1082)
+ .-|+..++...|...+....+. .|. ...+.++....+ .+......+ ...+..-.+.|..
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~~ 219 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYKP 219 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhCc
Confidence 3 3356677888887777665544 221 112233333332 222211111 1345555555666
Q ss_pred HHhhcCCCHHHHHHHHHHHHh
Q 001414 661 VIVQHTSNLYAANGAGVVLAE 681 (1082)
Q Consensus 661 ~l~~~p~~~~a~~~la~~~~~ 681 (1082)
.|+.+|.-...+..+|.+|..
T Consensus 220 ~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 220 SLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp ---HHHHTHHHHHHHHHHHH-
T ss_pred cccccHHHHHHHHHHHHHHCC
Confidence 666666666666677777665
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.26 E-value=3.9 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=7.4
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 001414 166 LGQACVEFNRGRYSDSLEF 184 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~ 184 (1082)
+++|..+..+|+|++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
No 393
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.93 E-value=3.6 Score=28.33 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFK--IVLEADRDN 161 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~--~al~~~p~~ 161 (1082)
+.|+.+|..+..+|++++|+..|. -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 468899999999999999999944 777777654
No 394
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.76 E-value=7.7 Score=41.16 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=57.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.+..++..++..+...|+++.++..++..+..+|.+-..|..+..+|...|+...|+..|+++-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677888888999999999999999999999999999999999999999999999998887653
No 395
>PF12854 PPR_1: PPR repeat
Probab=81.83 E-value=3.2 Score=28.10 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 001414 741 NTDAQILLYLARTHYEAEQWQDCKKSLLR 769 (1082)
Q Consensus 741 ~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 769 (1082)
.+|..+|..|...|++.|+.++|.++|.+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666666667777777776666654
No 396
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.57 E-value=8.3 Score=40.33 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~ 420 (1082)
..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+++.+-.....+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3345567888999999999999999999999999999999999999999999999999999999987766555443
No 397
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.93 E-value=16 Score=36.54 Aligned_cols=53 Identities=28% Similarity=0.291 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHH
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----NCETLKALGHIYVQLGQIEKA 395 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A 395 (1082)
+...+.||..|. ..+.++|+..+.+++...+. +++++..|+.+|.+.|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444443 34555555555555554322 355555555555555555554
No 398
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.75 E-value=2.8 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHh
Q 001414 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~le~ 65 (1082)
...+.+|.+|+.+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999999863
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=80.55 E-value=1e+02 Score=34.53 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
...|+.++..-.-.|+.+-|.-.-.+++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 334555555555555555555555555544
No 400
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=79.82 E-value=1.2e+02 Score=34.85 Aligned_cols=11 Identities=18% Similarity=-0.118 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 001414 746 ILLYLARTHYE 756 (1082)
Q Consensus 746 ~~~~La~~~~~ 756 (1082)
-+..|+..+..
T Consensus 122 ~l~~L~~~~~~ 132 (591)
T KOG2412|consen 122 DLNKLGLKESA 132 (591)
T ss_pred hHHHHHHhhcc
Confidence 34444444444
No 401
>PLN03237 DNA topoisomerase 2; Provisional
Probab=79.76 E-value=28 Score=45.56 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=17.9
Q ss_pred CchhhhhhhhHHHhcCCCCC----CCCCCCCCCch
Q 001414 1001 DDDVEENANDRLAAAGLEDS----DVDDEMAPSIT 1031 (1082)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 1031 (1082)
+++.-.+-+++|++-.|.-+ -.-.++.|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 33444567888999888432 22233555555
No 402
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.42 E-value=1.1 Score=53.09 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=6.5
Q ss_pred hhhccCcchhhccC
Q 001414 1057 DELQDSDGELREND 1070 (1082)
Q Consensus 1057 ~~~~~~~~~~~~~~ 1070 (1082)
++.++.+|++-|.+
T Consensus 1488 D~Dee~~~~~~d~~ 1501 (1516)
T KOG1832|consen 1488 DEDEEDDGEMQDFM 1501 (1516)
T ss_pred ccchhhhhhhhccc
Confidence 44444455544433
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.17 E-value=11 Score=39.89 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 001414 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAI 771 (1082)
Q Consensus 708 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al 771 (1082)
..+...+|.-|+..|++++|+.+|+.+...|....= ..++..|..|+...|+.+..+.+.-+++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345678899999999999999999999877643222 6677788899999999888887765544
No 404
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.08 E-value=58 Score=35.05 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHH
Q 001414 568 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647 (1082)
Q Consensus 568 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~ 647 (1082)
-.++|+.+-.-+..+.|..|+++-.++.+++...+.. -....+.++..+.---.. ....
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~-lW~r----------- 269 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRS-LWDR----------- 269 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchh-hhhH-----------
Confidence 3467777777788888888888877777665432211 011111111100000000 1111
Q ss_pred hhHHHHHHHHHHHHHhhcCCCHHHH-HHHHHHHHh-----cCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc
Q 001414 648 ATHLEKAKELYTRVIVQHTSNLYAA-NGAGVVLAE-----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 721 (1082)
Q Consensus 648 ~~~~~~A~~~~~~~l~~~p~~~~a~-~~la~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~ 721 (1082)
+-+.++..++.+++...---++.+ -.++.++.. .-+|..-..+|.-+....| +|.|-+|.+......
T Consensus 270 -~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap------SPvV~LNRAVAla~~ 342 (415)
T COG4941 270 -ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP------SPVVTLNRAVALAMR 342 (415)
T ss_pred -HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC------CCeEeehHHHHHHHh
Confidence 557777788888776553333332 233333332 3477777778888888776 688888999888888
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhh
Q 001414 722 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 722 g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
.-+..++.+.+-....-.-......+..-|..+.+.|+..+|...|.+++.+.++...-.|
T Consensus 343 ~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 343 EGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred hhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 8888888888877764111112333445677888999999999999999999988765554
No 405
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=78.90 E-value=3.7 Score=28.66 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 554 DAYLRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 554 ~a~~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
+++..||.+....++|++|+..|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888887754
No 406
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=78.52 E-value=20 Score=40.02 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=5.6
Q ss_pred hhhhhHHHhcCC
Q 001414 1006 ENANDRLAAAGL 1017 (1082)
Q Consensus 1006 ~~~~~~~~~~~~ 1017 (1082)
+..-.+|-+-|-
T Consensus 512 sv~~~~lcaidq 523 (708)
T KOG3654|consen 512 SVHSGLLCAIDQ 523 (708)
T ss_pred hhhhhhhccccc
Confidence 344455544443
No 407
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=77.76 E-value=60 Score=37.34 Aligned_cols=171 Identities=16% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHH--HHHHHHHHHHHHHHhchhhh---hhhhhHHHHHHHHHHHHH
Q 001414 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYE--RIAILNALGVYYTYLGKIET---KQREKEEHFILATQYYNK 119 (1082)
Q Consensus 45 ~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~--~~~~~~~la~~y~~~g~~~~---~~~~k~~~~~~A~~~~~~ 119 (1082)
.+|..++-.|+|+-|..+++.+.. .|.++..- -..++-..|.+.+..+..-. .+..-+..++.|...|.+
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~-----Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKK-----DFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHH-----HHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 488999999999999999998643 24332211 12334445555555554422 222345678889988888
Q ss_pred HH----hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-----HHHHHHHHHHH--HHcCChHHHHHHHH
Q 001414 120 AS----RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDN-----VPALLGQACVE--FNRGRYSDSLEFYK 186 (1082)
Q Consensus 120 al----~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~-----~~a~~~la~~~--~~~g~~~~Al~~~~ 186 (1082)
+- ...+....+.+..+.++...|.+.+|...+-+.... ..+. ...+-..|.++ ...........-++
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R 367 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR 367 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH
Confidence 42 222233456666777788888887777766666544 2111 22222333333 11000000000000
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
+ .+..++.-|.-|...|+...|..+|.+++....
T Consensus 368 K--------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 368 K--------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred H--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0 122344567778888999999999998887643
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.51 E-value=41 Score=35.18 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-cCCHHHHHHHHH
Q 001414 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQ 221 (1082)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~-~g~~~~A~~~~~ 221 (1082)
++.+|.+..+.|+|++.+.++++++..+|.....-+..+..+|-. .|....+...+.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~ 61 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILS 61 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhh
Confidence 456677777777777777777777777766544545555555532 233333433333
No 409
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.28 E-value=1.4e+02 Score=34.19 Aligned_cols=98 Identities=16% Similarity=0.033 Sum_probs=74.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
|-+...++.+-.++....+++-...++.+++... .+-.+++.++.+|... .-++-..++++.++.+-++ ...--.++
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-vv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-VVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-HHHHHHHH
Confidence 4455566666666666667777778888888765 5678999999999988 5577788889888888877 44445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 001414 205 LCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
..|.+ ++...+..+|.+++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH
Confidence 66665 8999999999998754
No 410
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=75.92 E-value=21 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhccCc
Q 001414 911 EEHFQRVKEQWRSSTP 926 (1082)
Q Consensus 911 ~~~~~~~~~~~~~~~~ 926 (1082)
|++.++..+.|-+...
T Consensus 112 EEKRrqkie~we~~q~ 127 (190)
T PF06936_consen 112 EEKRRQKIEMWESMQE 127 (190)
T ss_dssp HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555567755443
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.53 E-value=4.6 Score=45.25 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~a-------l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.||+.+++|.+|+..|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888876643 2223444466788999999999999999999998764
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=74.02 E-value=15 Score=41.39 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHH
Q 001414 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1082)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al 121 (1082)
+.+.+.++-.|+|..|+++++..-- .....|...+...+.+++.+|-+|+.++++. +|+..|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl-~~~~l~~~V~~~~is~~YyvGFaylMlrRY~-----------DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDL-NKKGLYTKVPACHISTYYYVGFAYLMLRRYA-----------DAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCc-ccchhhccCcchheehHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 4566677777777777777776421 1222344445555666666666666665555 5666666554
No 413
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=73.57 E-value=5 Score=44.34 Aligned_cols=11 Identities=55% Similarity=0.903 Sum_probs=9.3
Q ss_pred cCCCCCCCCCC
Q 001414 1015 AGLEDSDVDDE 1025 (1082)
Q Consensus 1015 ~~~~~~~~~~~ 1025 (1082)
+|++|||+++|
T Consensus 107 ~GFAdSDDEdD 117 (458)
T PF10446_consen 107 AGFADSDDEDD 117 (458)
T ss_pred ccccccccccc
Confidence 79999988865
No 414
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=73.37 E-value=89 Score=30.02 Aligned_cols=47 Identities=9% Similarity=-0.037 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 832 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 832 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
|++-...+..|...+.+-|..+....+++++...+...++..+|+.+
T Consensus 26 wkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA 72 (154)
T PRK06568 26 KKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLR 72 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567778888877778888777777776666666666666554
No 415
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=73.35 E-value=1.8e+02 Score=33.40 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=59.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCC----hHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 634 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~ 634 (1082)
++.......+.+.+..++-+.-.. |.. +.....+...++..|..+.++.+++.=+..+--+|.++...|-+. ++
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~-fl 149 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH-FL 149 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH-Hh
Confidence 334444444556666666554332 221 223446677788888889998888876665544577777777777 77
Q ss_pred HHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 635 AALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
.. |+|..|.++...+...
T Consensus 150 ~~------------~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 150 KK------------GNYKSAAKVATEMMLQ 167 (429)
T ss_pred hc------------ccHHHHHHHHHHHHHh
Confidence 77 8898888887665543
No 416
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=73.29 E-value=64 Score=28.28 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 841 THVEYCKHLLDAAKIHREAAEREE 864 (1082)
Q Consensus 841 ~~~~~~~~ll~~~~~~~~~~~~~e 864 (1082)
..+..-.++|......+..+.-+-
T Consensus 52 eki~~Fh~ILDd~~~~l~~sk~~v 75 (105)
T PF11214_consen 52 EKIHKFHSILDDTESKLNDSKWYV 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333455555555555555443
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.93 E-value=2.6e+02 Score=35.14 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 305 SHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
...|...+..+.+.|+.++|+..|-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 35667777788888888888888876663
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.63 E-value=2.3e+02 Score=35.52 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=95.6
Q ss_pred CHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCch-hhhhhhhHHHHHHHHHHHHHHHHHhchhhhhh
Q 001414 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEI-DEYYADVRYERIAILNALGVYYTYLGKIETKQ 103 (1082)
Q Consensus 25 ~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~-~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~ 103 (1082)
+.+++.+.|...+ -+..++..|...|+.++|.+++........ ...+... .+-.+..+...+|...
T Consensus 493 ~vee~e~~L~k~~----~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~------~~e~ii~YL~~l~~~~--- 559 (877)
T KOG2063|consen 493 DVEEIETVLKKSK----KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLD------GLEKIIEYLKKLGAEN--- 559 (877)
T ss_pred chHHHHHHHHhcc----cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhh------hHHHHHHHHHHhcccc---
Confidence 4555666665544 577899999999999999999999876431 1112222 1222444444444431
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCChhh-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Q 001414 104 REKEEHFILATQYYNKASRIDMHEPST-------------WVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQA 169 (1082)
Q Consensus 104 ~~k~~~~~~A~~~~~~al~~~p~~~~~-------------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la 169 (1082)
..-...+-.-.+..+|....- --....-|+......-++.+++.++..+... ...+..++
T Consensus 560 ------~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll 633 (877)
T KOG2063|consen 560 ------LDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLL 633 (877)
T ss_pred ------hhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHH
Confidence 113344444444444432210 0112344566777888889999888776542 22333333
Q ss_pred HHHHHc--------CChHHHHHH--HHHHHHh-------CCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 170 CVEFNR--------GRYSDSLEF--YKRALQV-------HPSC------PGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1082)
Q Consensus 170 ~~~~~~--------g~~~~Al~~--~~~al~~-------~p~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 224 (1082)
..|... ++-+++.+. .++.... +|+. ....+...+..+.++|+.++|+..|-..|
T Consensus 634 ~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 634 KLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred HHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 332221 222233333 2222211 1211 13456667777777777777777776655
No 419
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=72.18 E-value=43 Score=38.29 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001414 869 QRQEAARQAA 878 (1082)
Q Consensus 869 ~~~~~~~~~~ 878 (1082)
.+.|++|+.+
T Consensus 222 kr~Eaerk~~ 231 (591)
T KOG2412|consen 222 KREEAERKRR 231 (591)
T ss_pred hhhhhHHHHH
Confidence 3333333333
No 420
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.99 E-value=71 Score=28.26 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=55.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
+|.+-......++|..+.+-.-......-.+.+.+...+.++|+|++|+.. ...... +++--..+.|-+++|--
T Consensus 12 lAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~-----~~~~~~-pdL~p~~AL~a~klGL~ 85 (116)
T PF09477_consen 12 LALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLL-----PQCHCY-PDLEPWAALCAWKLGLA 85 (116)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHH-----HTTS---GGGHHHHHHHHHHCT-H
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHh-----cccCCC-ccHHHHHHHHHHhhccH
Confidence 344444455688898888776555544456677788899999999999321 122222 45556688999999999
Q ss_pred HHHHHHHHHH
Q 001414 214 GKARQAFQRA 223 (1082)
Q Consensus 214 ~~A~~~~~~a 223 (1082)
.++...+.+.
T Consensus 86 ~~~e~~l~rl 95 (116)
T PF09477_consen 86 SALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888864
No 421
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.74 E-value=4.6 Score=29.27 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 712 INLAHVYFAQGNFALAMKMYQNCLR 736 (1082)
Q Consensus 712 ~~la~~~~~~g~~~~Ai~~~~~al~ 736 (1082)
++||.+|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556666666666666666666654
No 422
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.53 E-value=2.2e+02 Score=33.71 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001414 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1082)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1082)
.+.+-|..+++..+|..++++|...+..++.+ ..+....-.++.||..+.+.+.|.++++.+-+.+|.++-..+.+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34456777889999999999999999865422 234555677899999999999999999999999999999888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 001414 384 HIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.+....|..++|+....+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998877654
No 423
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=70.76 E-value=1.1e+02 Score=29.84 Aligned_cols=46 Identities=20% Similarity=0.066 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 832 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 877 (1082)
Q Consensus 832 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~ 877 (1082)
||+-...+..|...+.+-+..++....+++....+..++++++|+.
T Consensus 28 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~ 73 (161)
T COG0711 28 WKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQ 73 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677778887778888887777777666666777776633
No 424
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=70.13 E-value=93 Score=31.62 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
...+..|.....+-|..+.....++++...+...++..+|...
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777666555556665555444
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.16 E-value=11 Score=24.54 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001414 212 QLGKARQAFQRALQLDPENVEALVALAV 239 (1082)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1082)
+.+.|...|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455566666666666655555555443
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.45 E-value=54 Score=33.07 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=49.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
.-+++.+...+|+.....-++..|.+......+..+|+-.|++++|...++-+-.+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4566777888888888888888888888888888888888888888888888888888764
No 427
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.85 E-value=9.6 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 748 LYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 748 ~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
+.||++|...|+.+.|+..++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 67999999999999999999999953
No 428
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.79 E-value=94 Score=30.27 Aligned_cols=52 Identities=31% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 001414 868 RQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 921 (1082)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1082)
..++.++|..|++++++ +.+++-+++..+++++..+++.|.++.+....+.=
T Consensus 120 N~~~~~~R~~Rla~~~~--E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~iers 171 (227)
T KOG4691|consen 120 NRRLHELRIARLAQEER--EQEQRIAEEQARKAEEVQAWKQQAEREVLQLIERS 171 (227)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666553332 22333344444455555556666665555554443
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.78 E-value=3.5e+02 Score=34.59 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
+..++.+|.||...|...+|+.+|.+|..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 445666777777777777777777776654
No 430
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=67.74 E-value=1.2e+02 Score=29.74 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
...+..|.....+-+..+.....++++...+..+++..+|+..
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA 90 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKA 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777766666666666665544
No 431
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=66.92 E-value=1.9e+02 Score=31.32 Aligned_cols=188 Identities=16% Similarity=0.052 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1082)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1082)
-++|+..=.-.+.+.|..++++-.++.+.++... ...-+..--..+-+...+... ...+-.+++..++.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR---~~AR~~~~G~~vlL~dQDr~l--------W~r~lI~eg~all~ 280 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESR---RPARFDADGEPVLLEDQDRSL--------WDRALIDEGLALLD 280 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh---hhhccCCCCCeeeccccchhh--------hhHHHHHHHHHHHH
Confidence 3566766667777788888887777776665432 000000000000011112211 22233455666666
Q ss_pred HHHhccCCCCCchHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 293 TALAVTNHGPTKSHSYYNLARSYH-----SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1082)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1082)
+++......|...++ .++.++. ..-+|..-..+|.-.... .| ++.+-++.+....+..-...++...+.
T Consensus 281 rA~~~~~pGPYqlqA--AIaa~HA~a~~aedtDW~~I~aLYdaL~~~---ap-SPvV~LNRAVAla~~~Gp~agLa~ve~ 354 (415)
T COG4941 281 RALASRRPGPYQLQA--AIAALHARARRAEDTDWPAIDALYDALEQA---AP-SPVVTLNRAVALAMREGPAAGLAMVEA 354 (415)
T ss_pred HHHHcCCCChHHHHH--HHHHHHHhhcccCCCChHHHHHHHHHHHHh---CC-CCeEeehHHHHHHHhhhHHhHHHHHHH
Confidence 666554433322222 2222222 223566666666655542 12 233345666666666667777777777
Q ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 368 VLEI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 368 ~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
+... -......+...|.++.++|+.++|...|.+++.+.++.....+...
T Consensus 355 L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 355 LLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred hhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6654 2344566777899999999999999999999999888766555443
No 432
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=66.16 E-value=1.2e+02 Score=30.78 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 835 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
-...+..|.....+-+..+....+++++...+...+++.++...
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA 116 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQA 116 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888877788888877777776666666666665444
No 433
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.98 E-value=2.3e+02 Score=31.82 Aligned_cols=162 Identities=14% Similarity=0.033 Sum_probs=84.5
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHHcCChHHHHHHHHHHHH--hCCCChH
Q 001414 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQ--VHPSCPG 197 (1082)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~l-a~~~~~~g~~~~Al~~~~~al~--~~p~~~~ 197 (1082)
++-|..+.++..+..-+++--..+.|..+|+..-...- -...++.++ +..-+..| .++...++. ..|+.
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl-- 273 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNL-- 273 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCch--
Confidence 34466666555544444444677888888877643321 122333222 22333333 444555444 35665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH---------
Q 001414 198 AIRLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--------- 262 (1082)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~--------- 262 (1082)
..+..+-.|..+-|+++.|+..+.+++. .+|.-...+ .+.....+.+++ ...+...+..+..
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh-~iik~f~re~dp--~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH-LIIKNFKRESDP--QKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH-HHHHHhcccCCc--hhhhHHHHHHHHHhhccCcccC
Confidence 5677788899999999999888877764 345433333 333333443331 2234444443332
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
..|.+.........++....+..-|.++..-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGL 381 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2344444443334444466666666555443
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.94 E-value=1.8e+02 Score=30.47 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1082)
++.++.+..+.|+|++++.++.+++..+|. +..-...|+.+|-.. .+....++..+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~--i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNV--IGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc--cccchHHHHhhhhHhh
Confidence 567899999999999999999999999876 334455555554332 1114445555544443
No 435
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.79 E-value=69 Score=32.48 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 001414 889 EQKKYLLEKRKLEDEQKRLRQ 909 (1082)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~ 909 (1082)
|.|-.+++.+++++.++.+++
T Consensus 146 EeR~~eEae~k~ee~~RkakE 166 (299)
T KOG3054|consen 146 EERLAEEAELKEEEKERKAKE 166 (299)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333333333443444343333
No 436
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.64 E-value=23 Score=37.24 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
...+..|...|.+.+|+++.+++++.+|-+...+..+..++...|+--.++..|++.-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3456777888888888888888888888888888888888888888777777777653
No 437
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.34 E-value=26 Score=36.83 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1082)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1082)
.+..|...|.+.+|+.+.++++.++|-+ ...+..+-..+..+|+--.|...|++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555566666666665555555 444555555555555555555555443
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.21 E-value=1.4e+02 Score=32.19 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=63.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR------DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGA 198 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~ 198 (1082)
-.+++...|..|++.|+-+.|.+.|.+.....- +-..+.+.+|..|....-..+.+...+.+++...+- ...
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 356889999999999999999999888765431 224455666666655544444444444444443322 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1082)
.....|..++...++.+|...|-.++...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 33445666667777777777777666543
No 439
>PTZ00121 MAEBL; Provisional
Probab=64.72 E-value=80 Score=40.70 Aligned_cols=16 Identities=6% Similarity=-0.064 Sum_probs=7.5
Q ss_pred HHHHHHHHhcCCCChh
Q 001414 114 TQYYNKASRIDMHEPS 129 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~ 129 (1082)
+..|.-.+...|.+..
T Consensus 136 lAMyqGlf~~CP~~~N 151 (2084)
T PTZ00121 136 LAMYQGLFKRCPLDEK 151 (2084)
T ss_pred HHHHhchhhcCCCchh
Confidence 4444444455554433
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.13 E-value=17 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 143 EVEQASSAFKIVLEADRDNVPALLGQA 169 (1082)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1082)
+++.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344455555555555554444444433
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.81 E-value=1.1e+02 Score=34.01 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.++..++.+|...|+++.|.+.|.++.............+.++..+-...|+|..-..+..++.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556666666666666666666665544333334445555555566666666666666555553
No 442
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=63.76 E-value=2.7e+02 Score=32.00 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=13.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 311 LARSYHSKGDYEKAGLYYMASVKE 334 (1082)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~ 334 (1082)
-|.-|...|+...|+.+|..+...
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555666666666666666543
No 443
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=63.61 E-value=2.1e+02 Score=30.55 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001414 654 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 720 (1082)
Q Consensus 654 A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~ 720 (1082)
|..+|.+++.+.|.+...++.+|.+....|+.-.|+=.|-+++-..- -.+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-----Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-----PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988888875431 257788999888887
No 444
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=63.49 E-value=11 Score=42.78 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.9
Q ss_pred ccccccCcCccc
Q 001414 954 RRKKDKSSRSHY 965 (1082)
Q Consensus 954 ~~~~~~~~~~~~ 965 (1082)
|+|+...++.++
T Consensus 273 rkkk~d~Dd~a~ 284 (555)
T KOG2393|consen 273 RKKKKDVDDEAF 284 (555)
T ss_pred cccccCCccccc
Confidence 444555545444
No 445
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=63.49 E-value=1.6e+02 Score=29.11 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
.+.+..|.....+-+..+.....++++...+...+++.+++..
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea 86 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEA 86 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666555556666555444
No 446
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=63.38 E-value=1.6e+02 Score=29.23 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
...+..|.....+.+..+.....++++...+...++..+|...
T Consensus 57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA 99 (181)
T PRK13454 57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEA 99 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777767777777766666655555555555554443
No 447
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=63.21 E-value=61 Score=35.73 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001414 806 VRSTVAELENAVRVFSHLS 824 (1082)
Q Consensus 806 ~~~a~~~l~~A~~~f~~l~ 824 (1082)
+.....-++.+..+...+.
T Consensus 230 ~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 230 MEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344445566666666665
No 448
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=75 Score=32.23 Aligned_cols=7 Identities=29% Similarity=0.340 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001414 872 EAARQAA 878 (1082)
Q Consensus 872 ~~~~~~~ 878 (1082)
+++++++
T Consensus 138 eE~erKk 144 (299)
T KOG3054|consen 138 EEAERKK 144 (299)
T ss_pred HHHHHhh
Confidence 3444444
No 449
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.55 E-value=50 Score=33.32 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=24.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
++.+..++|+.....-++..|.+......+-.++.-.|+|.+|+.-++-+-.+.|+.
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 334444444444444444444444433333344444444444444444444444443
No 450
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.99 E-value=3.3e+02 Score=32.32 Aligned_cols=87 Identities=11% Similarity=0.139 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPS------TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1082)
|.++|..++++|...+...|.+.. ..-.++.||+...+.+.|.+.+..+-+.+|.++...+..-++....|.-.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 567888999999999888776543 33446788888899999999999999999999998888888888999999
Q ss_pred HHHHHHHHHHHhC
Q 001414 180 DSLEFYKRALQVH 192 (1082)
Q Consensus 180 ~Al~~~~~al~~~ 192 (1082)
+|+..........
T Consensus 446 ~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 446 EALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhhh
Confidence 9999888776553
No 451
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.81 E-value=1.6e+02 Score=35.80 Aligned_cols=241 Identities=16% Similarity=0.051 Sum_probs=103.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH-HHHHHH---HHH
Q 001414 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLC---RYK 209 (1082)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~-~~lg~~---~~~ 209 (1082)
...+++..|+|+.|+.++-. .+.+..--..+|.++...|-+.-.-..-...+..+|.+++.+. ..+... .+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34668889999999999876 2333322333444444444443333333555665555422111 112222 334
Q ss_pred cCCHHHHHHHHHHHHhh-CCCCHH-HHHHHHHHHHHhc-------c----HHhHHHHHHHHHHHHHhCCCC---HHHHHH
Q 001414 210 LGQLGKARQAFQRALQL-DPENVE-ALVALAVMDLQAN-------E----AAGIRKGMEKMQRAFEIYPYC---AMALNY 273 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~-a~~~la~~~~~~~-------~----~~~~~~A~~~~~~al~~~p~~---~~~~~~ 273 (1082)
..+...|+.+|--+-.. +|.... .+..+..+.+..+ + .....-.+....+.+...... ..+...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 56777888777543322 122221 1222333322222 1 011233344433344443322 234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC-------ChhhHH
Q 001414 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-------FIFPYY 346 (1082)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~ 346 (1082)
.|.-.-..|++..|+.+|.-+ |+|+.++..+.+.+...-..+. ...-..
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La------------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~ 475 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLA------------------------EEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLI 475 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHT------------------------T-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------hhHHHHHHHHHHHHHHHHcCccccccccchhhhHH
Confidence 667777888888888888754 4667777776666542110011 111122
Q ss_pred H----HHHHHHHcCCH-----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001414 347 G----LGQVQLKLGDF-----RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 347 ~----la~~~~~~g~~-----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~ 412 (1082)
. +...|...+.. ......|..++.+. -..-++..|+++.|+..+++. .+-|.++..
T Consensus 476 ~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~---------~ff~~~~~g~~~~AL~~i~~L-~liP~~~~~ 540 (613)
T PF04097_consen 476 ELAKEILERYKSNPHISSKVSRKNRETFQLLLDLA---------EFFDLYHAGQYEQALDIIEKL-DLIPLDPSE 540 (613)
T ss_dssp HHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHH---------HHHHHHHTT-HHHHHHHHHHT-T-S-S-HHH
T ss_pred HHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHhC-CCCCCCHHH
Confidence 2 23333333322 55666677776642 234456778888888887764 355655443
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.07 E-value=1.1e+02 Score=35.79 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=17.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIV 154 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1082)
+..-|-.+|...+..|++..|.++|.++
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445666666666666666666666654
No 453
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=60.49 E-value=9.5 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~ 69 (1082)
+|..+-..|.+.|++++|..+++.+.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 5888999999999999999999987543
No 454
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=60.44 E-value=1.7e+02 Score=28.33 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
...+..|.....+-+..+.....+++....+...++..+|...
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea 90 (156)
T CHL00118 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666665556665555443
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.40 E-value=1.1e+02 Score=30.25 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCC--chhhhhhhhHHHHHHHHHHHHHHHHHhchhh---hhhhhhHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSP--EIDEYYADVRYERIAILNALGVYYTYLGKIE---TKQREKEEHFILAT 114 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~--~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~---~~~~~k~~~~~~A~ 114 (1082)
+++++.-+..|++.|++.++.++.+.+... .+.. -.......+.+...|..+ .-|+.- -+...+.-=+..|+
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~-~~a~~~k~l~i~QfLsRI--~eG~~LD~~Fd~~~~~TPLESAl 89 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLK-LTATQLKTLRIMQFLSRI--AEGKNLDCQFENDEELTPLESAL 89 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcccc-ccccchhHhHHHHHHHHH--HcCCCCCCccCCCCCcChHHHHH
Confidence 457788899999999999998876654211 1100 000011122232233222 122211 00111112244677
Q ss_pred HHHHHHHhcCCCCh--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001414 115 QYYNKASRIDMHEP--------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1082)
Q Consensus 115 ~~~~~al~~~p~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1082)
..++..-+-.|... ..-.....++...|.|++|.+.+++... +|++......++.+
T Consensus 90 ~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 90 MVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 77776544443210 0112234567777777777777777776 66665444444433
No 456
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=60.18 E-value=3.6e+02 Score=32.09 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHH
Q 001414 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1082)
|..|.++++.++..+|.. ++...|++++|+...++... +..........+.+....+ ......-..+|
T Consensus 300 yk~a~KYLR~al~s~p~v----------lLl~~~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d-~~~~~~l~~~~ 367 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV----------LLLIGGRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFD-QNNSSVLSSCL 367 (547)
T ss_pred HHHHHHHHHHHhcCCCCe----------EEeccccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhC-cccHHHHHHHH
Confidence 444555554444444432 33445788888777776432 2223333333444444443 12256667788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 001414 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYYMAS 331 (1082)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 331 (1082)
+.+++.+|.....+..+...+-. ...+.++++.+.-..... .....|..++.++.+ .++++.-.+....+
T Consensus 368 e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 368 EDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred HHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHH
Confidence 88888888777666555554433 445555555332222222 334566666666666 44444333333333
No 457
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=59.28 E-value=8.6 Score=25.55 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 001414 41 DLWLIIAREYFKQGKVEQFRQILEEGSS 68 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~le~a~~ 68 (1082)
..|..+..++.+.|+++.|..+++.+..
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998754
No 458
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.78 E-value=32 Score=36.99 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001414 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
|..+|.+|+.+.|.. +..+..+|.++...|+.-.|+-+|-+++-...-.+.+..+|..+.
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 456666666666666 666666666666666666666666666644333344444444443
No 459
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=58.77 E-value=2.7e+02 Score=30.28 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
-+..+...+.++.|+..++..+...+. .....+.++.++...|.++-|..+|..+.+.
T Consensus 219 eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 219 EARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355666667777777777765443222 2234455666777777777777777666543
No 460
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=58.77 E-value=1.6e+02 Score=31.71 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 001414 846 CKHLLDAAKIHR 857 (1082)
Q Consensus 846 ~~~ll~~~~~~~ 857 (1082)
+...|.++...+
T Consensus 138 VgKtlEQAl~EV 149 (291)
T PF06098_consen 138 VGKTLEQALMEV 149 (291)
T ss_pred HHHHHHHHHHHH
Confidence 333455554433
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.95 E-value=31 Score=32.56 Aligned_cols=52 Identities=23% Similarity=0.132 Sum_probs=39.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1082)
......+..+...+..|++.-|..+.+.++..+|+|..+...++.++.+.|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4556778888888888888889998888888888888888888877766553
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.89 E-value=1.8e+02 Score=33.04 Aligned_cols=62 Identities=21% Similarity=0.122 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHH--HHHHH--HHHHHHhcCHHHHHHHHHHHHHH
Q 001414 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD--AYLRL--AAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 521 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--a~~~l--a~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
.....+..++..++|..|..++..+...-|.... .+..+ |..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445667788999999999999999886343332 33333 44467788999999999998775
No 463
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=57.75 E-value=15 Score=39.79 Aligned_cols=75 Identities=23% Similarity=0.151 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
..+..++.+-+..+.+..|+.....++...+....+++..+..+....++++|++.+..+....|++......+.
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 345567788888888888888888888878888899999999999999999999999999999998876555443
No 464
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=57.39 E-value=1.4e+02 Score=34.10 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHH
Q 001414 666 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 745 (1082)
Q Consensus 666 p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~ 745 (1082)
|-+...+-.++.......+.+.+..++-+.+... .+... .+.+...+...|+..|.++.++.++..=+. |+--+|..
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~-~~~~~-~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~ 139 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP-NCSYL-LPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNF 139 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc-ccccc-cCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChh
Confidence 4444444444444445556666777777666532 22211 233344666677777777777777766543 34455666
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
....|...+++.|++..|.++...++..
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 6777777777788887777776554443
No 465
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=57.23 E-value=2.1e+02 Score=28.52 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
...+..|.....+-+..+.....++++...+...+++.++..+
T Consensus 50 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea 92 (184)
T CHL00019 50 SDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEA 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777766666666666665544
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.99 E-value=2.6e+02 Score=29.46 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEA 579 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~a~~~la~~~~~~g~~~eA~~~~~~a 579 (1082)
...+...+|..|...|++++|..+|+.+...... ...++..+..++...|+.+..+.+.-++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677888888888888888888888654321 1455666777777777777766655443
No 467
>PLN03086 PRLI-interacting factor K; Provisional
Probab=56.13 E-value=67 Score=37.90 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 001414 866 QNRQRQEAARQAAL 879 (1082)
Q Consensus 866 ~~~~~~~~~~~~~~ 879 (1082)
+.+.|++.+|+.++
T Consensus 22 ~~~~~~~~~~~~~~ 35 (567)
T PLN03086 22 RAKLKLERERKAKE 35 (567)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555543
No 468
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.11 E-value=16 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 711 WINLAHVYFAQGNFALAMKMYQNCLR 736 (1082)
Q Consensus 711 ~~~la~~~~~~g~~~~Ai~~~~~al~ 736 (1082)
|..+-.+|.+.|++++|...|+++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555555555555555555555543
No 469
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=56.07 E-value=2e+02 Score=27.86 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
...+..|.....+.+..+.....++++...+...++..++...
T Consensus 31 ~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea 73 (159)
T PRK13461 31 KAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEG 73 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888877788888877777776666666666666553
No 470
>PLN03086 PRLI-interacting factor K; Provisional
Probab=55.95 E-value=46 Score=39.21 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001414 860 AEREEQQNRQRQEAARQAALA 880 (1082)
Q Consensus 860 ~~~~e~~~~~~~~~~~~~~~~ 880 (1082)
+++.+++++.|.+.||...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (567)
T PLN03086 9 REKLEREQRERKQRAKLKLER 29 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555443
No 471
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=55.67 E-value=46 Score=26.87 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 869 QRQEAARQAALAEEARRKAEEQKK 892 (1082)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1082)
+|+-+.++...+++.+|+++++.+
T Consensus 20 ~kLka~k~eLk~~ee~r~e~e~~~ 43 (70)
T PF13025_consen 20 AKLKAKKQELKAEEEKRKEEERAR 43 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444455555544443
No 472
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=1.5e+02 Score=31.22 Aligned_cols=167 Identities=11% Similarity=0.019 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLA--------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--GR 177 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g~ 177 (1082)
..-..|++.=...+..+|..-..|..+-.+... ..-++.-+..+..+++-+|.+...|..+-.++-.- .+
T Consensus 46 eys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~ 125 (328)
T COG5536 46 EYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPS 125 (328)
T ss_pred hcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcc
Confidence 334466777667777777666666655444333 12256667788888889999988887777666554 66
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHhccHH
Q 001414 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCR------YKLGQLGKARQAFQRALQLDPENVEALVAL---AVMDLQANEAA 248 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~------~~~g~~~~A~~~~~~al~~~p~~~~a~~~l---a~~~~~~~~~~ 248 (1082)
+..-+.+.++++..+|.+ -.+|...-.|+ ..-..+..-.++-..++..++.|..+|... -...++.|+..
T Consensus 126 ~~rEl~itkklld~DsrN-yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vi 204 (328)
T COG5536 126 WGRELFITKKLLDSDSRN-YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVI 204 (328)
T ss_pred cchhHHHHHHHhcccccc-cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccc
Confidence 777788888888888877 23332221222 233334444555556677788888887665 33333444422
Q ss_pred h---HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 249 G---IRKGMEKMQRAFEIYPYCAMALNYLA 275 (1082)
Q Consensus 249 ~---~~~A~~~~~~al~~~p~~~~~~~~la 275 (1082)
+ +.+-+++.-..+-.+|.+..++..+-
T Consensus 205 sqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 205 SQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred hHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 1 44555556666666777776665543
No 473
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=55.00 E-value=2.5e+02 Score=29.99 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001414 807 RSTVAELENAVRVFSHLSA 825 (1082)
Q Consensus 807 ~~a~~~l~~A~~~f~~l~~ 825 (1082)
..|+..+..|+..|..+.-
T Consensus 83 ~qAl~av~~a~~~L~~~gi 101 (271)
T PF05890_consen 83 KQALEAVKEARPRLKKLGI 101 (271)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3445555666666666653
No 474
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.89 E-value=49 Score=36.56 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1082)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1082)
+..+|.-|...|+++.|+..|.++-.........+..+.++..+-+..|+|.....+..++
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 3344444444555555555554433322222233334444444444444444444333333
No 475
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.68 E-value=15 Score=39.75 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001414 446 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 525 (1082)
Q Consensus 446 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 525 (1082)
...+.-.++.+++..|..-|.+++.-... ....... +... ...........+..++
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~---~s~~~~~------------------e~~~---~~~~~~~~r~~~~~n~ 281 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSE---QSRDREK------------------EQEN---RIPPLRELRFSIRRNL 281 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcc---ccccccc------------------cccc---ccccccccccccccch
Confidence 34566788999999999999988763210 0000000 0000 0111233344566678
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhh
Q 001414 526 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 596 (1082)
Q Consensus 526 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 596 (1082)
+.+-...+.+..|+..-..++...+....++++.+..+....++++|+..+..+....|++..+...+...
T Consensus 282 ~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 282 AAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred HHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 88888889999998887777888888899999999999999999999999999999999988766555444
No 476
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=54.43 E-value=2.2e+02 Score=27.87 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 837 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 837 ~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
..+..|.....+.+..+.....++++...+-..++..++...
T Consensus 37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea 78 (167)
T PRK14475 37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQA 78 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766666556665555444
No 477
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=54.27 E-value=2.3e+02 Score=29.91 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 836 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
.+.+..|.....+.+..+.....++++...+..++++.+++.+
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea 73 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQR 73 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777665555555555555444
No 478
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.99 E-value=28 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 711 WINLAHVYFAQGNFALAMKMYQNCLR 736 (1082)
Q Consensus 711 ~~~la~~~~~~g~~~~Ai~~~~~al~ 736 (1082)
|..+-..|.+.|++++|.++|..+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666666554
No 479
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=53.54 E-value=10 Score=41.83 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=13.4
Q ss_pred hhhhhhHHHhcCCCCCCCCCC
Q 001414 1005 EENANDRLAAAGLEDSDVDDE 1025 (1082)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~ 1025 (1082)
++.++-.|-+--|.|+|+|+.
T Consensus 90 ~e~~e~~~~~~~l~~~~~de~ 110 (807)
T KOG0066|consen 90 DEKPEKSLPANDLDDEDDDEA 110 (807)
T ss_pred ccchhhcCcccccCCCCchhh
Confidence 345556666777888776644
No 480
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.43 E-value=1.7e+02 Score=32.51 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhh
Q 001414 811 AELENAVRVFSHLSA 825 (1082)
Q Consensus 811 ~~l~~A~~~f~~l~~ 825 (1082)
..|..+...|..+.-
T Consensus 287 ~~l~k~~~~ieyih~ 301 (440)
T KOG2357|consen 287 SQLNKYGDNIEYIHF 301 (440)
T ss_pred HHHHHHHhhhheEEe
Confidence 345556666665543
No 481
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=53.07 E-value=2.3e+02 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 835 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
-...+..|.....+-+..+....+++++...+...++..+|+..
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea 76 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAER 76 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888877788888877777776666666666666554
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.05 E-value=1.8e+02 Score=35.02 Aligned_cols=125 Identities=15% Similarity=0.084 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC------hHHHHHhhhhhh---cccchHHHHHHHHHhhhcCCCCcHH
Q 001414 553 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSY 623 (1082)
Q Consensus 553 ~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~d~~ 623 (1082)
++....+...|....+|+.-+.+.+.+-.+ |+. ..+.+.++.++. +-|+-.+|+...-.+++......+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 555666666677777777766666654433 321 222333333333 3467888888888888765443333
Q ss_pred HHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Q 001414 624 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 683 (1082)
Q Consensus 624 ~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~ 683 (1082)
.+..-|.+ |-.+-.... -...+..+.|+++|+++++..|.-.. -.+++.++...|
T Consensus 280 m~Cl~GRI-YKDmF~~S~---ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRI-YKDMFIASN---YTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred eeeeechh-hhhhhhccC---CcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 44445666 554421111 01237889999999999999986332 234555555444
No 483
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=52.97 E-value=1.5e+02 Score=35.00 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=6.5
Q ss_pred chHHHHhhhcC
Q 001414 1030 ITAARRRRALS 1040 (1082)
Q Consensus 1030 ~~~~~~~~~~~ 1040 (1082)
|.+.+.||-|-
T Consensus 502 S~~VsarrPlA 512 (811)
T KOG4364|consen 502 SQVVSARRPLA 512 (811)
T ss_pred ccccccCCccc
Confidence 55566666664
No 484
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=52.88 E-value=2.1e+02 Score=27.12 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 835 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
-...+..|.....+.+..+.....+++....+....+..+|...
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA 75 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEA 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776666666665556666555443
No 485
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=52.85 E-value=1.5e+02 Score=27.42 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHh-----------cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAA-----------SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 740 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 740 (1082)
...+-.++...|+.+.-..+++++-... |++...-+..++..+.++|...|++..|+++.....+.|+-
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I 84 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPI 84 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCC
Confidence 3455666778888888888877765444 22222224677888888888888999999998888888876
Q ss_pred CCCHHHHHHH
Q 001414 741 NTDAQILLYL 750 (1082)
Q Consensus 741 ~~~~~~~~~L 750 (1082)
+-...++..|
T Consensus 85 ~i~~~~W~~L 94 (126)
T PF12921_consen 85 PIPKEFWRRL 94 (126)
T ss_pred CCCHHHHHHH
Confidence 5556666654
No 486
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.83 E-value=1.7e+02 Score=31.37 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001414 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1082)
.+.+.+|..|-+.++|..|.+.|.-.-.... .+..+...++..+..+|.+|+..+... +|..+.+++
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg--~~~~d~~~kl~l~iriarlyLe~~d~v-----------eae~~inRa 170 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTG--QKAYDVEQKLLLCIRIARLYLEDDDKV-----------EAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccc--hhhhhhHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHH
Confidence 3678899999999999999999987643321 122223345666777888888877655 666666665
Q ss_pred H--hcCCCChhhHHH----HHHHHHHcCCHHHHHHHHHHH
Q 001414 121 S--RIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIV 154 (1082)
Q Consensus 121 l--~~~p~~~~~~~~----~a~~~~~~g~~~~A~~~~~~a 154 (1082)
. ..+..|+...+. .|.++-..++|-+|...|-++
T Consensus 171 Sil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 171 SILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223344443333 344444556665555555444
No 487
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.25 E-value=19 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~ 69 (1082)
.|..+...|.+.|++++|..+|..+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5788999999999999999999987544
No 488
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.15 E-value=1.6e+02 Score=25.75 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 143 EVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1082)
Q Consensus 143 ~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 221 (1082)
..++|..+-+-. ...++ .-.+-+.+...+.++|+|++|+.+.+.. +.+++--.++.|-+++|-...+...+.
T Consensus 20 cHqEA~tIAdwL-~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~------~~pdlepw~ALce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWL-HLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL------CYPDLEPWLALCEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC------CCchHHHHHHHHHHhhccHHHHHHHHH
Confidence 367776665544 33443 3444566677889999999998876543 335666678999999998887777666
Q ss_pred HHH
Q 001414 222 RAL 224 (1082)
Q Consensus 222 ~al 224 (1082)
+.-
T Consensus 93 rla 95 (115)
T TIGR02508 93 RLA 95 (115)
T ss_pred HHH
Confidence 544
No 489
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.00 E-value=1.2e+02 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.8
Q ss_pred HcCCHHHHHHHHHHHHHhhcC
Q 001414 720 AQGNFALAMKMYQNCLRKFYY 740 (1082)
Q Consensus 720 ~~g~~~~Ai~~~~~al~~~~~ 740 (1082)
..|+|++|+.+|..+++.|..
T Consensus 18 ~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 348899999999999887754
No 490
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.91 E-value=2e+02 Score=32.64 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001414 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
...+..+++.++|..|..+|..+...-|.... ...+..|.-+|..-++.+|...++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566677777888888877777765233211 12334566678888888998888887754
No 491
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.32 E-value=2.5e+02 Score=27.65 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 837 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 878 (1082)
Q Consensus 837 ~~~~~~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 878 (1082)
+.+..|.....+-+..+.....++++...+...+++.+++..
T Consensus 46 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea 87 (174)
T PRK07352 46 KILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEA 87 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766666666666666554
No 492
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.31 E-value=62 Score=38.28 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
++..+..+....+.-+..........+..+..+-..|..++|..+|++.+.++|+ ..++..|..+++.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3455667777777776666666677788888888889999999999999999888 67778888888999888888887
Q ss_pred H
Q 001414 186 K 186 (1082)
Q Consensus 186 ~ 186 (1082)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.08 E-value=1.7e+02 Score=35.19 Aligned_cols=198 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC-CHH
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLCRYKL---GQLGKARQAFQRALQLDPE-NVE 232 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~-~~~ 232 (1082)
.+..-..+-..|....+|+.-+++.+..-.+-... ...+.+..+.++-+. |+-.+|+...-.+++.... .++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Q ss_pred HHHHHHHHHHHh------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchH
Q 001414 233 ALVALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306 (1082)
Q Consensus 233 a~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 306 (1082)
.+...|.+|... .+.+....|+..|+++++..|......+.-..+...-..++....+-...+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~Igm----------- 348 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGM----------- 348 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHH-----------
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001414 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1082)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1082)
.++..+.+.|..++-..|+.-+. .-.+..-.++|.+|+..-+.++++.|.....-..+..+.
T Consensus 349 ---kLn~LlgrKG~leklq~YWdV~~---------------y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 349 ---KLNSLLGRKGALEKLQEYWDVAT---------------YFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENIL 410 (1226)
T ss_pred ---HHHHHhhccchHHHHHHHHhHHH---------------hhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHH
Q ss_pred H
Q 001414 387 V 387 (1082)
Q Consensus 387 ~ 387 (1082)
.
T Consensus 411 l 411 (1226)
T KOG4279|consen 411 L 411 (1226)
T ss_pred H
No 494
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=50.77 E-value=85 Score=33.53 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhhccCch
Q 001414 856 HREAAEREEQQNRQRQEAARQAALAEE-----ARRKAEEQKKYLLEKRK---LEDEQKRLRQQEEHFQRVKEQWRSSTPA 927 (1082)
Q Consensus 856 ~~~~~~~~e~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1082)
+.+++++.-.+++.|++.-+-.|+.++ .+++.+++++..++.++ ..+.+++.+..+++.++.+..-..-...
T Consensus 95 ~rer~E~eL~eLkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~~m~~~~~~~~ 174 (361)
T KOG3634|consen 95 EREREEKELKELKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQEMMAGRFAED 174 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcc
Q ss_pred hhhh
Q 001414 928 SKRR 931 (1082)
Q Consensus 928 ~~~~ 931 (1082)
.+++
T Consensus 175 ~~gk 178 (361)
T KOG3634|consen 175 DAGK 178 (361)
T ss_pred cccC
No 495
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=50.55 E-value=95 Score=34.62 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-------CCCCCCHHHHHHHHHHHHHHHH
Q 001414 779 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL-------HLHGFDEKKINTHVEYCKHLLD 851 (1082)
Q Consensus 779 ~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~ 851 (1082)
.+.||+|.+|.+.+........++.+.++.+..-++.|--+|+.|...--+ ++.-++...+......| |-
T Consensus 110 sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~lm---LA 186 (353)
T cd09243 110 SMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQC---TA 186 (353)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHHH---HH
Q ss_pred HHHHHH
Q 001414 852 AAKIHR 857 (1082)
Q Consensus 852 ~~~~~~ 857 (1082)
+++.+.
T Consensus 187 QAQE~~ 192 (353)
T cd09243 187 EAQEVT 192 (353)
T ss_pred HHHHHH
No 496
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=50.55 E-value=2.1e+02 Score=26.59 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHhc-----------------CCchHHHHHHHHHHHHhcCCCCCCch
Q 001414 649 THLEKAKELYTRVIVQHTS---NLYAANGAGVVLAEK-----------------GQFDVSKDLFTQVQEAASGSVFVQMP 708 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~---~~~a~~~la~~~~~~-----------------~~~~~A~~~~~~~~~~~p~~~~~~~~ 708 (1082)
|..++..++..+.....|- |+...+-+-.+-+.. |++..-+..+-++ ...
T Consensus 16 G~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~----------n~~ 85 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR----------NKL 85 (161)
T ss_dssp T-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT----------T--
T ss_pred chHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh----------cch
Q ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 001414 709 DVWINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 772 (1082)
Q Consensus 709 ~~~~~la-~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 772 (1082)
.-|+.+| .++..+|+-++=-+.+....+. ...+|.++..+|.+|.+.|+..+|-.++.+|.+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 497
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=50.52 E-value=2e+02 Score=27.40 Aligned_cols=63 Identities=30% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001414 851 DAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHF 914 (1082)
Q Consensus 851 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1082)
.....+.+..+....+++.++++|++.. ++++.+..+++++..+++.+.+.+.+.....+|..
T Consensus 72 Eeer~~~eELe~ileen~rkvEEAQrk~-aeEr~~~~Eer~~~~eer~k~e~e~~kk~k~EQ~~ 134 (149)
T PF15346_consen 72 EEERKKREELEKILEENRRKVEEAQRKL-AEERLRMEEERRRELEERQKMEKEREKKQKEEQMK 134 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=50.17 E-value=2.2e+02 Score=26.62 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHH
Q 001414 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426 (1082)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~ 426 (1082)
.+...+...+.+...+.+++.++..++.++.....+..+|.+. +..+.+.++.. .++..+.-..+..+...+-++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHHHHHHHHcCcHH
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhh
Q 001414 427 AALDAFKTKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 505 (1082)
Q Consensus 427 ~Al~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 505 (1082)
+++-++.+ ...+.....++... ++++.|++++
T Consensus 87 ~~~~l~~k-------~~~~~~Al~~~l~~~~d~~~a~~~~---------------------------------------- 119 (140)
T smart00299 87 EAVELYKK-------DGNFKDAIVTLIEHLGNYEKAIEYF---------------------------------------- 119 (140)
T ss_pred HHHHHHHh-------hcCHHHHHHHHHHcccCHHHHHHHH----------------------------------------
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001414 506 ENDGNHVELPWNKVTVLFNLARLLEQIHD 534 (1082)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 534 (1082)
..+.++..|..++..+.....
T Consensus 120 --------~~~~~~~lw~~~~~~~l~~~~ 140 (140)
T smart00299 120 --------VKQNNPELWAEVLKALLDKPR 140 (140)
T ss_pred --------HhCCCHHHHHHHHHHHHccCC
No 499
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=49.29 E-value=2.5e+02 Score=27.01 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001414 850 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKE 919 (1082)
Q Consensus 850 l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1082)
+..-.....++.++-..+.+.+++.++++..++.+++.|++...+-..+.++...++........++.-+
T Consensus 46 ~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KEe 115 (157)
T PF15236_consen 46 IEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKEE 115 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=49.28 E-value=86 Score=34.55 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHH
Q 001414 847 KHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL---LEKRKLEDEQKRLRQQ 910 (1082)
Q Consensus 847 ~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 910 (1082)
...+.++...+++..+...+...+..++....+.++++|+++++.... ++++|-++.++++++.
T Consensus 254 ~e~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe~kk~~r 320 (321)
T PF07946_consen 254 PEAKKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEKERKKEQR 320 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Done!