Query 001414
Match_columns 1082
No_of_seqs 1405 out of 5021
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 17:34:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001414.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_713-717//hhsearch_pdb/001414hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 347.2 44.8 310 421-789 284-595 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 344.4 47.4 493 126-754 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 320.0 46.9 247 520-787 136-382 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 315.5 49.0 254 112-409 17-270 (388)
5 3fp2_A TPR repeat-containing p 1.0 1 1 307.1 41.0 458 127-782 24-500 (537)
6 2gw1_A Mitochondrial precursor 1.0 1 1 297.2 42.8 254 517-787 235-492 (514)
7 2gw1_A Mitochondrial precursor 1.0 1 1 293.4 44.3 465 128-750 6-489 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 292.4 40.6 378 79-617 21-408 (537)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 269.5 47.6 362 112-599 10-375 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 264.4 41.6 348 301-791 22-376 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=347.21 Aligned_cols=310 Identities=13% Similarity=0.078 Sum_probs=269.2
Q ss_pred HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11997799999986409999889999999999983998999999999981101122113555203434556677644555
Q 001414 421 ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 500 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 500 (1082)
..|++++|+..+.+....+.+...++.++.++...|++++|+..|++++.
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------ 333 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE------------------------------ 333 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------------------
T ss_conf 73139999999987643883099999999999984689999999999997------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 54320048887678872478999999999951895899999999998488909999999999999169889999999999
Q 001414 501 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580 (1082)
Q Consensus 501 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al 580 (1082)
..|.+..++..++.++...|++++|...+..++...|.+..++..++.++...|++++|+.+|++++
T Consensus 334 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 334 -------------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp -------------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf -------------2955379999999999982777799999999985183547999999999998356999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88499957999964354004656999999999631279976799999674999997622002804876679999999999
Q 001414 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 660 (1082)
Q Consensus 581 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 660 (1082)
...|.+..+|..++.++...|++++|+..|++++...|. +..++..++.+ |... |++++|+..|.+
T Consensus 401 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~ 466 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQS 466 (597)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHH
T ss_conf 729777899999999999757779999999999986813-43899999999-9985------------799999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99625787899999999998229915799999999997169-988874-4799999999998189899999999999862
Q 001414 661 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 661 al~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~-~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
++...|.++.+++.+|.++...|++++|+.+|+++++..|. ...|+. +.+|..+|.+|...|++++|+..|++++..
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 545 (597)
T 2xpi_A 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL- 545 (597)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-
T ss_conf 9984888767999999999981899999999999998532345453549999999999999804799999999999973-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 499999999999999997024999999999998619997003657999989
Q 001414 739 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789 (1082)
Q Consensus 739 ~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 789 (1082)
.|.++.++..+|.+|...|++++|...|++++++.|+++..+++++.+|.
T Consensus 546 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 -STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp -SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred -CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf -89973899999999998178999999999997208887489999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=344.45 Aligned_cols=493 Identities=14% Similarity=0.063 Sum_probs=252.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99324998999999809999999999999994999999999999999982996999999999998499992789988999
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1082)
.++..|..++..+...|++++|+..|.+++...|++ ..+..++.++...|++.+|+..|.+++.. |.+ ..++..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS-SACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCC-HHHHHHHHH
T ss_conf 899999999999987458347999999999608993-57999999999747699999999987335-456-508999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9998299789999999999529----------------987999999999999711087699999999999983988799
Q 001414 206 CRYKLGQLGKARQAFQRALQLD----------------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~----------------p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
+|...|++++|+..|++..... |.+..+|..++.++...|+ +.+|+..|.+++..+|.++.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCHHHH
T ss_conf 999886699999998424886322323433432112351258999998899998399---89999999999972932569
Q ss_pred HHHHHHHHHHHCCCHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 999999999982997999999---99998506899973389999999999719999999999999984189999835698
Q 001414 270 ALNYLANHFFFTGQHFLVEQL---TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~---~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1082)
++..++.++...+....+... +...... ........+..++..|...|++++|+..|.+++.. +.....+.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~ 309 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKE--DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLL 309 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG--GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCHHHHHH
T ss_conf 9999998503461567899986577423443--08899999999999980731399999999876438----83099999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 89999998199999999999999759995999999999999739999999999999981999899999999999119977
Q 001414 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426 (1082)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~l~~~~~~~ 426 (1082)
.++.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+.+++...|.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------- 373 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA---------------- 373 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH----------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----------------
T ss_conf 9999999846899999999999972955379999999999982777799999999985183547----------------
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999986409999889999999999983998999999999981101122113555203434556677644555543200
Q 001414 427 AALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 506 (1082)
Q Consensus 427 ~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 506 (1082)
.++..+|.++...|++++|+..|++++.
T Consensus 374 ----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------------ 401 (597)
T 2xpi_A 374 ----------------VTWLAVGIYYLCVNKISEARRYFSKSST------------------------------------ 401 (597)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------
T ss_pred ----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------------------------
T ss_conf ----------------9999999999983569999999999987------------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 48887678872478999999999951895899999999998488909999999999999169889999999999884999
Q 001414 507 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 586 (1082)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 586 (1082)
..|.+..++..++.++...|++++|+..|++++...|.+..++..++.++...|++++|+.+|++++...|.+
T Consensus 402 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 402 -------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp -------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf -------2977789999999999975777999999999998681343899999999998579999999999999848887
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57999964354004656999999999631279976799999674999997622002804876679999999999996257
Q 001414 587 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 666 (1082)
Q Consensus 587 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 666 (1082)
+.++..++.++...|++++|+..|++++...|.. ..+|
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------------------~~~p 512 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------------------------------------QSNE 512 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------------------------------------CCCS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC------------------------------------------CCCH
T ss_conf 6799999999998189999999999999853234------------------------------------------5453
Q ss_pred CC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 87-89999999999822991579999999999716998887447999999999981898999999999998624999999
Q 001414 667 SN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 745 (1082)
Q Consensus 667 ~~-~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~ 745 (1082)
.+ ..++..+|.++...|++++|+..|+++++..| +++.+|..+|.+|...|++++|+..|+++++. .|.++.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~ 585 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-----NDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIM 585 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCCHH
T ss_conf 54999999999999980479999999999997389-----97389999999999817899999999999720--888748
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 001414 746 ILLYLARTH 754 (1082)
Q Consensus 746 ~l~~La~~~ 754 (1082)
++..|+.+|
T Consensus 586 ~~~~l~~~~ 594 (597)
T 2xpi_A 586 ASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
T ss_conf 999999987
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=320.04 Aligned_cols=247 Identities=19% Similarity=0.225 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 89999999999518958999999999984889099999999999991698899999999998849995799996435400
Q 001414 520 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 599 (1082)
Q Consensus 520 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 599 (1082)
.++..+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999846899999999999872989789999999999985999999999999985598867999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 46569999999996312799767999996749999976220028048766799999999999962578789999999999
Q 001414 600 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 679 (1082)
Q Consensus 600 ~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 679 (1082)
.|++++|+..|.+++...|. +..++..+|.+ |+.. |++++|+..|++++..+|.++.++..+|.++
T Consensus 216 ~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 57899999999999852968-78999999999-9986------------8899999999999864999889999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 82299157999999999971699888744799999999998189899999999999862499999999999999997024
Q 001414 680 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 759 (1082)
Q Consensus 680 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~ 759 (1082)
...|++++|+..|++++...| .++.++.++|.++...|++++|+..|++++.. .|.++.++..+|.++...|+
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTC
T ss_pred HHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCC
T ss_conf 986997999999999986494-----44999999999999848999999999999860--98739999779999998688
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9999999999986199970036579999
Q 001414 760 WQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 760 ~~~A~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
+++|+..|++++.+.|+++.++++++.+
T Consensus 355 ~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 355 LQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp CHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8999999999986199978999859999
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=315.52 Aligned_cols=254 Identities=18% Similarity=0.239 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999872199993249989999998099999999999999949999999999999999829969999999999984
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+..|.+++..+|.++.++..+|.+++..|++++|...+..++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus 17 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999998497889999999999998689999999999997619786699999999998779999999999999874
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99992789988999999829978999999999952998799999999999971108769999999999998398879999
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
.|+. ...+..+|.++...|++++|+..|.+++..+|++..++..+|.++...|+ +.+|+..|.+++...|.++
T Consensus 97 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~--- 169 (388)
T 1w3b_A 97 KPDF-IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR---LEEAKACYLKAIETQPNFA--- 169 (388)
T ss_dssp CTTC-HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHCTTCH---
T ss_pred CCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCH---
T ss_conf 9653-99999999999985899999999999997598968999999999998468---9999999999987298978---
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999829979999999999850689997338999999999971999999999999998418999983569889999
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1082)
.++..+|.++...|++++|+..|++++. ..|....++..+|.+
T Consensus 170 ----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 170 ----------------------------------VAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNV 212 (388)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHH
T ss_conf ----------------------------------9999999999985999999999999985---598867999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9981999999999999997599959999999999997399999999999999819998
Q 001414 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
+...|++++|+..|.+++...|+++.++..+|.++...|++++|+..|++++...|.+
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 270 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9985789999999999985296878999999999998688999999999998649998
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=307.06 Aligned_cols=458 Identities=13% Similarity=0.110 Sum_probs=277.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 93249989999998099999999999999949999999999999999829969999999999984999927899889999
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1082)
.+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++.+|+..|++++..+|++ ..+++.+|.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHH
T ss_conf 899999999999986429999999999986389984899999999998689999999999998609862-8999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99829978999999999952998799999999999971108769999999999998398879999999999998299799
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1082)
+..+|++++|+..|+ ++..+|+....+.. .+...+. ...++..+..++...|.....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~~~---------------- 159 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRGSQ---------------- 159 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------C----------------
T ss_pred HHHCCCHHHHHHHHH-HHHCCCCCCHHHHH---HHHHHHH---HHHHHHHHHHHHHHCCCCCCC----------------
T ss_conf 998389999999999-98648787858899---9998778---988999999999747454543----------------
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999850689997338999999999971999999999999998418999983569889999998199999999999
Q 001414 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1082)
..|.. .....+....+...++..+ .
T Consensus 160 -------------~~~~~-----~~~~~~~~~~~~~~~~~~~-------------------------------------~ 184 (537)
T 3fp2_A 160 -------------VLPSN-----TSLASFFGIFDSHLEVSSV-------------------------------------N 184 (537)
T ss_dssp -------------CCCCH-----HHHHHHHHTSCHHHHHHTS-------------------------------------C
T ss_pred -------------CCCHH-----HHHHHHHHHCCHHHHHHHH-------------------------------------H
T ss_conf -------------45067-----5799999744749999987-------------------------------------6
Q ss_pred HHHHHCCCCHHHHHHHH--------HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 99975999599999999--------9999739999999999999981999899999999999119977999999864099
Q 001414 367 KVLEIYPDNCETLKALG--------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE 438 (1082)
Q Consensus 367 ~~l~~~p~~~~~~~~la--------~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~l~~~~~~~~Al~~l~~~~~~ 438 (1082)
......+........++ ......+++.+|+..+++++...|.+...+..++
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~--------------------- 243 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA--------------------- 243 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH---------------------
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH---------------------
T ss_conf 32564617899999998788764020688887999999999999987877404459999---------------------
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 99889999999999983998999999999981101122113555203434556677644555543200488876788724
Q 001414 439 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 518 (1082)
Q Consensus 439 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 518 (1082)
.++..+|.++...|++++|+..|.+++. ..|.
T Consensus 244 ----~~~~~~g~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~- 275 (537)
T 3fp2_A 244 ----LALCYTGIFHFLKNNLLDAQVLLQESIN-------------------------------------------LHPT- 275 (537)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCCC-
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------CCCC-
T ss_conf ----9999999998754557899999999986-------------------------------------------6987-
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 78999999999951895899999999998488909999999999999169889999999999884999579999643540
Q 001414 519 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 598 (1082)
Q Consensus 519 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 598 (1082)
..+++.+|.++...|+++.|+..|.+++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 349 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ------ 349 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH------
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH------
T ss_conf 46999999999980379999999999754599987999999999986689999999999999859997799999------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 04656999999999631279976799999674999997622002804876679999999999996257878999999999
Q 001414 599 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 678 (1082)
Q Consensus 599 ~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 678 (1082)
+|.+ |+.. |++++|+..|.+++..+|.++.++..+|.+
T Consensus 350 -----------------------------la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 350 -----------------------------LACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPTFFAEI 387 (537)
T ss_dssp -----------------------------HHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred -----------------------------HHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -----------------------------9999-9984------------779999999999987399985999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 982299157999999999971699888-7447999999999981----------89899999999999862499999999
Q 001414 679 LAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNTDAQIL 747 (1082)
Q Consensus 679 ~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~----------g~~~~Ai~~~~~al~~~~~~~~~~~l 747 (1082)
+...|++++|+..|++++...|..... .....++.+|.++... |++++|+..|++++.. .|.++.++
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~ 465 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAK 465 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCHHHH
T ss_conf 9883788999999999987097624468889999988999999764010022475799999999999974--99978999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99999999702499999999999861999700365
Q 001414 748 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 748 ~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 782 (1082)
..+|.++...|++++|+..|++++.+.|.++....
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999851499999999999986899388888
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=297.19 Aligned_cols=254 Identities=14% Similarity=0.130 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 24789999999999518958999999999984889099999999999991698899999999998849995799996435
Q 001414 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 596 (1082)
Q Consensus 517 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 596 (1082)
....+++.+|.++...|++++|+..+.+++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 78999999999999878999999999999863864-89999999999988889999999999861386778999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 40046569999999996312799767999996749999976220028048766799999999999962578789999999
Q 001414 597 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 676 (1082)
Q Consensus 597 ~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la 676 (1082)
+...|++++|+..|++++...|. +..++..+|.+ |... |++++|+..|.+++...|.++.++..+|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------NKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------TCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCHH-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99807799999999999873850-28999999999-9986------------8999999999999987546778999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9998229915799999999997169988-8744799999999998---18989999999999986249999999999999
Q 001414 677 VVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA---QGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 752 (1082)
Q Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~---~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~ 752 (1082)
.++...|++++|+..|.+++...|.... .....++.++|.++.. .|++++|+..|++++.. .|.++.++..+|.
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 457 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_conf 99987889999999999999761233217899999999999986633258889999999999875--8555899999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99970249999999999986199970036579999
Q 001414 753 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 753 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
++...|++++|...|++++.+.|+++.++..+.+.
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99982579999999999987661468899999999
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=293.41 Aligned_cols=465 Identities=13% Similarity=0.111 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 32499899999980999999999999999499999999999999998299699999999999849999278998899999
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1082)
+..++.+|..++..|++++|+..|++++..+| ++.++..+|.+++..|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHH
T ss_conf 79999987899986027899999999985592-27899868899998854999999998776069378-99999888999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 98299789999999999529987999999999999711087699999999999983988799999999999982997999
Q 001414 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1082)
..+|++++|+..|.+++...|.+......+...............++..+..+... |.........+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~------------ 150 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKE------------ 150 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHH------------
T ss_conf 98766888999999999559875113789999999999999999999989999876-65126772467------------
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998506899973389999999999719999999999999984189999835698899999981999999999999
Q 001414 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1082)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1082)
...... ..|..... ..+............
T Consensus 151 ------~~~~~~-------------------------------------~~~~~~~~-----~~~~~~~~~~~~~~~--- 179 (514)
T 2gw1_A 151 ------RKDKQE-------------------------------------NLPSVTSM-----ASFFGIFKPELTFAN--- 179 (514)
T ss_dssp -------------------------------------------------CCCCHHHH-----HHHHTTSCCCCCCSS---
T ss_pred ------HHHHCC-------------------------------------CCCHHHHH-----HHHHHHCCHHHHHHH---
T ss_conf ------886344-------------------------------------78615899-----999862587888887---
Q ss_pred HHHHCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 997599959999999999997---3999999999999998-----1--99989999999999911997799999986409
Q 001414 368 VLEIYPDNCETLKALGHIYVQ---LGQIEKAQELLRKAAK-----I--DPRDAQAFIDLGELLISSDTGAALDAFKTKAG 437 (1082)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~l~kal~-----~--~p~~~~~~~~la~l~~~~~~~~Al~~l~~~~~ 437 (1082)
+ ..|.+..++..+|.++.. .|++++|+..|.+++. . .|.+......
T Consensus 180 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 235 (514)
T 2gw1_A 180 -Y-DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK---------------------- 235 (514)
T ss_dssp -C-CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH----------------------
T ss_pred -H-CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH----------------------
T ss_conf -2-5995888999989999876233229999999999998866542238100114827----------------------
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99988999999999998399899999999998110112211355520343455667764455554320048887678872
Q 001414 438 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 517 (1082)
Q Consensus 438 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 517 (1082)
...++..+|.++...|++++|+..|++++. ..|.
T Consensus 236 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------------------------------------------~~~~ 269 (514)
T 2gw1_A 236 ---LAISLEHTGIFKFLKNDPLGAHEDIKKAIE-------------------------------------------LFPR 269 (514)
T ss_dssp ---HHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-------------------------------------------HCCC
T ss_pred ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------HCCC
T ss_conf ---899999999999987899999999999986-------------------------------------------3864
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 47899999999995189589999999999848890999999999999916988999999999988499957999964354
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 597 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 597 (1082)
..++..+|.++...|++++|+..+.+++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf -8999999999998888999999999986138677899999999999807799999999999873850289999999999
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH------H
Q ss_conf 0046569999999996312799767999996749999976220028048766799999999999962578789------9
Q 001414 598 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY------A 671 (1082)
Q Consensus 598 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------a 671 (1082)
...|++++|+..|++++...|. +..++..+|.+ |... |++++|+..|.+++...|.+.. +
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPE-APEVPNFFAEI-LTDK------------NDFDKALKQYDLAIELENKLDGIYVGIAP 414 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTSSSCSSCSHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9868999999999999987546-77899999999-9878------------89999999999999761233217899999
Q ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9999999982---2991579999999999716998887447999999999981898999999999998624999999999
Q 001414 672 ANGAGVVLAE---KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 748 (1082)
Q Consensus 672 ~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~ 748 (1082)
+..+|.++.. .|++++|+..|++++...| +++.++..+|.++...|++++|+..|++++.. .|.++.++.
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~ 487 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHH
T ss_conf 99999998663325888999999999987585-----55899999999999825799999999999876--614688999
Q ss_pred HH
Q ss_conf 99
Q 001414 749 YL 750 (1082)
Q Consensus 749 ~L 750 (1082)
.+
T Consensus 488 ~~ 489 (514)
T 2gw1_A 488 AI 489 (514)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=292.44 Aligned_cols=378 Identities=14% Similarity=0.124 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 89899999999999998003331256649999999999999872199993249989999998099999999999999949
Q 001414 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1082)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1082)
.......+..+|..|...|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 0788999999999999864299-----------99999999986389984899999999998689999999999998609
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH---H
Q ss_conf 9999999999999998299699999999999849999278998899999982997899999999995299879999---9
Q 001414 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 235 (1082)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 235 (1082)
|+++.+++.+|.++...|++.+|+..|+ ++...|.. ...+ ...+...+....|+..+.+++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~-~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF-DGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCC-CHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 8628999999999998389999999999-98648787-8588---99999877898899999999974745454345067
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999997110876999999999999839887999999999999829979999999999850689997338999999999
Q 001414 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1082)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~ 315 (1082)
.....+....+ ...++..+.......+........++..+
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------- 204 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLY------------------------------------- 204 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHCC---HHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------------------------
T ss_conf 57999997447---49999987632564617899999998788-------------------------------------
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHH
Q ss_conf 97199999999999999841899998356988999999819999999999999975999599-------99999999997
Q 001414 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-------TLKALGHIYVQ 388 (1082)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~ 388 (1082)
... .+......+++.+|+..|++++...|++.. ++..+|.++..
T Consensus 205 ~~~-----------------------------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 205 SAT-----------------------------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp TCS-----------------------------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 764-----------------------------020688887999999999999987877404459999999999999875
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 39999999999999981999899999999999119977999999864099998899999999999839989999999999
Q 001414 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 468 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p~~~~~~~~la~l~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 468 (1082)
.|++++|+..+.+++...|. .. .+..+|.++...|++++|+..|.++
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~~--------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-PN--------------------------------SYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-HH--------------------------------HHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC-CH--------------------------------HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 45578999999999866987-46--------------------------------9999999999803799999999997
Q ss_pred HHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 81101122113555203434556677644555543200488876788724789999999999518958999999999984
Q 001414 469 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+. ..|..+.++..+|.++...|++++|+..|.+++..
T Consensus 303 ~~-------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 303 VD-------------------------------------------LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HH-------------------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HC-------------------------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 54-------------------------------------------59998799999999998668999999999999985
Q ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 889099999999999991698899999999998849995799996435400465699999999963127
Q 001414 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 549 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
.|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..|++++...
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 999779999999999984779999999999987399985999999999988378899999999998709
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=269.54 Aligned_cols=362 Identities=19% Similarity=0.167 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999872199993249989999998099999999999999949999999999999999829969999999999984
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.+...+.+++..+|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++.+|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 44656423566537899999999999998799999999999999849716899999999999879979999999999844
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999278998899999982997899999999995299879---9999999999971108769999999999998398879
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
+|.. ..++..+|.++..+|++++|+..|++++..+|.+. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-------------------------
T ss_conf 9874-89999999999986999999999999972499970168899999999999-------------------------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999999999829979999999999850689997338999999999971999999999999998418999983569889
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1082)
..++.+|.++...|++++|+..|.+++. ..|....++..+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHH
T ss_conf -------------------------------------9999999999986899999999999998---688976999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999819999999999999975999599999999999973999999999999998199989999999999911997799
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~l~~~~~~~~A 428 (1082)
|.++...|++++|+..|.+++...|.++.++..+|.+|...|++++|+..|++++...|++...+..+..+..
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~------- 256 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK------- 256 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------
T ss_conf 9999877999999999999998688987999999999997599999999999998759980899999999999-------
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998640999988999999999998399899999999998110112211355520343455667764455554320048
Q 001414 429 LDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 508 (1082)
Q Consensus 429 l~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 508 (1082)
......+|.++...|++++|+..|++++...|
T Consensus 257 -------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------- 288 (450)
T 2y4t_A 257 -------------LNKLIESAEELIRDGRYTDATSKYESVMKTEP----------------------------------- 288 (450)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----------------------------------
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----------------------------------
T ss_conf -------------99999999999871799999999999985087-----------------------------------
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 88767887-24789999999999518958999999999984889099999999999991698899999999998849995
Q 001414 509 GNHVELPW-NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587 (1082)
Q Consensus 509 ~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 587 (1082)
..+ .....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++.++|+++
T Consensus 289 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 289 -----SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp -----SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred -----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
T ss_conf -----336899999999999999878899999999999884845489999999999870379999999999988593529
Q ss_pred HHHHHHHHHHHC
Q ss_conf 799996435400
Q 001414 588 NALSMLGDLELK 599 (1082)
Q Consensus 588 ~~~~~lg~~~~~ 599 (1082)
.++..++.+...
T Consensus 364 ~~~~~l~~~~~~ 375 (450)
T 2y4t_A 364 QIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=264.44 Aligned_cols=348 Identities=15% Similarity=0.150 Sum_probs=196.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99733899999999997199999999999999841899998356988999999819999999999999975999599999
Q 001414 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1082)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1082)
+|..+..++.+|..+...|++++|+..|.+++. ..|....+++.+|.++...|++++|+..|.+++...|.+..++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 378999999999999987999999999999998---49716899999999999879979999999999844987489999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999973999999999999998199989---99999999991199779999998640999988999999999998399
Q 001414 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDA---QAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGE 457 (1082)
Q Consensus 381 ~la~~~~~~g~~~~A~~~l~kal~~~p~~~---~~~~~la~l~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~ 457 (1082)
.+|.+|...|++++|+..|++++...|.+. .++..++.++. ...+..+|..+...|
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~~~~~~a~~~~~~~- 157 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE--------------------MQRLRSQALNAFGSG- 157 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHCC-
T ss_conf 99999998699999999999997249997016889999999999--------------------999999999999868-
Q ss_pred HHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 89999999999811011221135552034345566776445555432004888767887247899999999995189589
Q 001414 458 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 537 (1082)
Q Consensus 458 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 537 (1082)
++++
T Consensus 158 ----------------------------------------------------------------------------~~~~ 161 (450)
T 2y4t_A 158 ----------------------------------------------------------------------------DYTA 161 (450)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ----------------------------------------------------------------------------CHHH
T ss_conf ----------------------------------------------------------------------------9999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999984889099999999999991698899999999998849995799996435400465699999999963127
Q 001414 538 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 538 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
|+..|.+++...|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++...
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999999986889769999999999877999999999999998688987999999999997599999999999998759
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99767999996749999976220028048766799999999999962578789999999999822991579999999999
Q 001414 618 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697 (1082)
Q Consensus 618 ~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~ 697 (1082)
|. +...+..++.+ +.. .....+|.++...|++++|+..|.+++.
T Consensus 242 p~-~~~~~~~~~~~-----------------~~~------------------~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 242 QD-HKRCFAHYKQV-----------------KKL------------------NKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp TT-CHHHHHHHHHH-----------------HHH------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHH-----------------HHH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98-08999999999-----------------999------------------9999999999871799999999999985
Q ss_pred HHCCCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 7169988874----479999999999818989999999999986249999999999999999702499999999999861
Q 001414 698 AASGSVFVQM----PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 698 ~~p~~~~~~~----~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 773 (1082)
..| ++ ..++.++|.++...|++++|+..|+.++.. .|.++.++..+|.++...|++++|...|++++.+
T Consensus 286 ~~p-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 286 TEP-----SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HCC-----SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCC-----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 087-----336899999999999999878899999999999884--8454899999999998703799999999999885
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 999700365799998998
Q 001414 774 APSNYTLRFDAGVAMQKF 791 (1082)
Q Consensus 774 ~p~~~~~~~nla~~~~~~ 791 (1082)
.|+++.++.+++.+....
T Consensus 359 ~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 359 NENDQQIREGLEKAQRLL 376 (450)
T ss_dssp SSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 935299999999999986
Done!