Query 001415
Match_columns 1082
No_of_seqs 947 out of 4695
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 00:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0275 Conserved WD40 repeat- 100.0 1E-65 2.2E-70 490.8 31.5 491 5-698 7-507 (508)
2 KOG0293 WD40 repeat-containing 100.0 6.1E-64 1.3E-68 494.7 33.4 492 5-701 17-514 (519)
3 KOG0319 WD40-repeat-containing 100.0 1.7E-56 3.6E-61 475.1 45.6 574 364-1049 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 4.3E-55 9.3E-60 464.4 43.5 547 357-995 61-621 (775)
5 KOG0291 WD40-repeat-containing 100.0 1.3E-50 2.8E-55 430.0 61.4 571 353-1047 50-710 (893)
6 KOG0318 WD40 repeat stress pro 100.0 5E-50 1.1E-54 409.0 58.8 574 364-1046 24-602 (603)
7 KOG0271 Notchless-like WD40 re 100.0 2.4E-53 5.3E-58 415.8 29.3 376 340-898 97-479 (480)
8 KOG0318 WD40 repeat stress pro 100.0 5.4E-49 1.2E-53 401.5 56.6 540 351-993 52-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 1.6E-49 3.5E-54 421.5 48.0 580 368-1047 32-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 9.7E-49 2.1E-53 415.6 45.6 550 356-998 63-669 (888)
11 KOG0291 WD40-repeat-containing 100.0 5.1E-46 1.1E-50 395.2 61.1 545 362-1054 18-622 (893)
12 KOG0271 Notchless-like WD40 re 100.0 5.9E-50 1.3E-54 392.1 25.0 362 416-947 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 1.1E-43 2.4E-48 373.5 40.6 605 361-1049 40-716 (1080)
14 KOG0273 Beta-transducin family 100.0 3.7E-40 8.1E-45 332.7 37.3 357 346-900 166-523 (524)
15 KOG1539 WD repeat protein [Gen 100.0 4E-38 8.6E-43 339.5 55.1 589 364-1049 39-651 (910)
16 KOG1408 WD40 repeat protein [F 100.0 1.8E-39 3.9E-44 342.0 40.7 555 357-997 77-717 (1080)
17 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-41 1.8E-45 333.2 23.6 285 463-898 173-458 (459)
18 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-40 2.9E-45 331.6 21.7 285 354-698 171-458 (459)
19 KOG0286 G-protein beta subunit 100.0 1.2E-38 2.6E-43 302.5 32.6 290 353-746 50-342 (343)
20 KOG0263 Transcription initiati 100.0 4E-38 8.7E-43 340.0 35.2 277 343-650 362-651 (707)
21 KOG0276 Vesicle coat complex C 100.0 2E-36 4.2E-41 315.4 43.5 478 355-949 10-490 (794)
22 KOG1063 RNA polymerase II elon 100.0 4.1E-36 8.9E-41 317.5 44.4 644 350-1046 46-763 (764)
23 KOG1539 WD repeat protein [Gen 100.0 2E-35 4.4E-40 318.7 50.3 546 356-992 74-647 (910)
24 KOG0279 G protein beta subunit 100.0 6.8E-37 1.5E-41 289.1 29.5 295 353-700 10-313 (315)
25 KOG0286 G-protein beta subunit 100.0 1.4E-35 3E-40 281.8 31.9 294 567-991 49-343 (343)
26 KOG0292 Vesicle coat complex C 100.0 4.2E-34 9.2E-39 309.0 47.5 489 357-991 8-516 (1202)
27 KOG1063 RNA polymerase II elon 100.0 1.4E-34 3.1E-39 305.9 42.9 545 364-1046 20-699 (764)
28 KOG2106 Uncharacterized conser 100.0 5.7E-34 1.2E-38 289.9 45.3 509 350-1045 96-625 (626)
29 KOG0296 Angio-associated migra 100.0 3.5E-35 7.7E-40 287.8 34.1 338 416-900 60-398 (399)
30 KOG0279 G protein beta subunit 100.0 2.1E-35 4.5E-40 279.1 31.0 295 717-1047 13-314 (315)
31 KOG0295 WD40 repeat-containing 100.0 4.2E-36 9.2E-41 293.9 24.3 303 350-698 100-404 (406)
32 KOG0276 Vesicle coat complex C 100.0 9.3E-34 2E-38 295.5 42.6 460 416-985 9-483 (794)
33 KOG0315 G-protein beta subunit 100.0 9.5E-35 2E-39 269.5 30.5 297 372-879 11-309 (311)
34 KOG0315 G-protein beta subunit 100.0 3.9E-34 8.5E-39 265.4 27.2 273 732-1049 11-291 (311)
35 KOG0296 Angio-associated migra 100.0 4.6E-33 9.9E-38 273.0 33.9 333 350-858 56-398 (399)
36 KOG0295 WD40 repeat-containing 100.0 3.3E-34 7.1E-39 280.7 24.6 300 416-899 104-405 (406)
37 KOG0285 Pleiotropic regulator 100.0 4.7E-34 1E-38 278.1 25.2 299 348-749 140-439 (460)
38 KOG0273 Beta-transducin family 100.0 2.7E-33 5.8E-38 283.3 29.8 288 357-748 234-522 (524)
39 KOG0293 WD40 repeat-containing 100.0 1.8E-33 3.8E-38 279.3 24.0 293 415-859 219-514 (519)
40 KOG0645 WD40 repeat protein [G 100.0 4.7E-32 1E-36 255.2 32.0 294 353-748 9-310 (312)
41 KOG0265 U5 snRNP-specific prot 100.0 9.3E-33 2E-37 263.8 26.8 290 350-745 39-334 (338)
42 KOG0263 Transcription initiati 100.0 1.6E-33 3.5E-38 304.6 23.9 274 718-1049 377-652 (707)
43 KOG0265 U5 snRNP-specific prot 100.0 2.1E-32 4.5E-37 261.5 27.9 294 415-856 42-336 (338)
44 KOG0292 Vesicle coat complex C 100.0 1.3E-30 2.7E-35 282.4 44.9 449 416-1002 5-488 (1202)
45 KOG2048 WD40 repeat protein [G 100.0 6.2E-30 1.3E-34 270.9 48.9 505 420-1049 25-551 (691)
46 KOG2048 WD40 repeat protein [G 100.0 3.7E-29 8.1E-34 265.0 54.5 500 357-996 24-551 (691)
47 KOG0285 Pleiotropic regulator 100.0 2.8E-32 6E-37 265.9 25.2 287 415-901 146-440 (460)
48 KOG2106 Uncharacterized conser 100.0 2.7E-30 5.8E-35 263.3 40.2 426 357-899 153-625 (626)
49 KOG0284 Polyadenylation factor 100.0 3.7E-33 8E-38 277.2 18.5 284 357-749 95-380 (464)
50 KOG0266 WD40 repeat-containing 100.0 3.2E-31 7E-36 299.7 32.0 288 357-700 158-454 (456)
51 KOG0645 WD40 repeat protein [G 100.0 1.8E-30 3.9E-35 244.6 28.9 291 718-1046 13-311 (312)
52 KOG0316 Conserved WD40 repeat- 100.0 4.9E-31 1.1E-35 242.7 23.9 283 413-744 10-295 (307)
53 KOG0282 mRNA splicing factor [ 100.0 7.4E-32 1.6E-36 274.3 19.5 290 415-856 209-503 (503)
54 KOG0266 WD40 repeat-containing 100.0 1.5E-30 3.2E-35 294.4 32.1 289 718-1046 158-454 (456)
55 KOG0281 Beta-TrCP (transducin 100.0 2.4E-32 5.2E-37 264.9 14.1 273 357-702 196-479 (499)
56 KOG0316 Conserved WD40 repeat- 100.0 1.1E-30 2.4E-35 240.4 23.6 282 348-690 6-290 (307)
57 KOG0284 Polyadenylation factor 100.0 2.2E-31 4.8E-36 264.5 20.2 285 718-1049 95-383 (464)
58 KOG0278 Serine/threonine kinas 100.0 5.9E-31 1.3E-35 244.2 18.5 287 415-903 9-300 (334)
59 KOG1445 Tumor-specific antigen 100.0 6.8E-29 1.5E-33 258.9 34.2 579 349-997 70-848 (1012)
60 KOG0281 Beta-TrCP (transducin 100.0 5.3E-31 1.1E-35 255.6 16.5 277 419-751 196-479 (499)
61 KOG0282 mRNA splicing factor [ 100.0 1.9E-30 4.2E-35 264.0 20.8 284 717-1044 212-503 (503)
62 cd00200 WD40 WD40 domain, foun 100.0 1.1E-28 2.3E-33 268.3 35.4 284 355-747 6-289 (289)
63 cd00200 WD40 WD40 domain, foun 100.0 2.2E-28 4.8E-33 265.8 36.9 284 416-856 5-289 (289)
64 KOG0643 Translation initiation 100.0 2.1E-29 4.7E-34 236.5 24.2 293 415-901 5-318 (327)
65 PLN00181 protein SPA1-RELATED; 100.0 2.1E-28 4.5E-33 299.6 39.9 311 380-899 457-792 (793)
66 PLN00181 protein SPA1-RELATED; 100.0 2.3E-28 5E-33 299.2 39.2 305 354-748 479-792 (793)
67 KOG0275 Conserved WD40 repeat- 100.0 6.2E-30 1.4E-34 245.7 17.4 291 718-1044 212-507 (508)
68 KOG0640 mRNA cleavage stimulat 100.0 1.5E-28 3.3E-33 235.2 26.4 312 351-747 105-424 (430)
69 KOG0313 Microtubule binding pr 100.0 7.3E-28 1.6E-32 237.7 25.9 305 417-900 102-418 (423)
70 KOG0641 WD40 repeat protein [G 100.0 1.6E-26 3.4E-31 211.2 31.4 319 350-748 24-348 (350)
71 KOG0643 Translation initiation 100.0 2.9E-27 6.2E-32 222.3 27.1 301 352-749 4-317 (327)
72 KOG0278 Serine/threonine kinas 100.0 1.1E-28 2.3E-33 229.2 17.2 306 715-1069 10-322 (334)
73 KOG0313 Microtubule binding pr 100.0 1.8E-27 3.8E-32 235.0 24.3 291 348-700 95-418 (423)
74 KOG0283 WD40 repeat-containing 100.0 6.7E-28 1.5E-32 263.8 22.0 302 356-702 265-578 (712)
75 KOG1446 Histone H3 (Lys4) meth 100.0 7.6E-26 1.6E-30 219.6 33.7 289 415-901 9-304 (311)
76 KOG0299 U3 snoRNP-associated p 100.0 3.2E-27 7E-32 239.3 25.1 295 351-688 135-443 (479)
77 KOG0288 WD40 repeat protein Ti 100.0 6.7E-28 1.5E-32 240.4 16.7 296 345-698 161-459 (459)
78 KOG0310 Conserved WD40 repeat- 100.0 1.3E-26 2.8E-31 236.9 26.4 286 718-1049 25-312 (487)
79 KOG1407 WD40 repeat protein [F 100.0 2.1E-26 4.5E-31 216.0 25.4 276 460-891 15-293 (313)
80 KOG0310 Conserved WD40 repeat- 100.0 1.2E-26 2.5E-31 237.3 25.0 284 354-746 22-306 (487)
81 KOG1445 Tumor-specific antigen 100.0 2.7E-25 5.8E-30 232.3 35.2 501 501-1049 71-847 (1012)
82 KOG0973 Histone transcription 100.0 1E-26 2.2E-31 261.2 26.1 304 718-1049 12-358 (942)
83 KOG1407 WD40 repeat protein [F 100.0 3.9E-26 8.6E-31 214.1 25.7 278 353-740 15-293 (313)
84 KOG0283 WD40 repeat-containing 100.0 1.3E-26 2.8E-31 253.8 25.7 276 718-996 266-579 (712)
85 KOG0772 Uncharacterized conser 100.0 2.2E-26 4.7E-31 235.6 24.7 297 416-856 163-485 (641)
86 KOG0308 Conserved WD40 repeat- 99.9 7.6E-27 1.7E-31 245.8 21.7 253 357-650 20-287 (735)
87 KOG0640 mRNA cleavage stimulat 99.9 1.4E-26 2.9E-31 221.9 20.8 303 618-991 112-424 (430)
88 KOG0277 Peroxisomal targeting 99.9 1.7E-26 3.7E-31 215.6 20.9 287 362-699 12-308 (311)
89 KOG1446 Histone H3 (Lys4) meth 99.9 7.3E-25 1.6E-29 212.8 32.6 289 718-1049 13-306 (311)
90 KOG0274 Cdc4 and related F-box 99.9 7E-26 1.5E-30 253.5 28.8 283 356-708 206-490 (537)
91 KOG0288 WD40 repeat protein Ti 99.9 5.8E-27 1.3E-31 233.8 17.6 285 416-855 171-458 (459)
92 KOG0973 Histone transcription 99.9 6.4E-26 1.4E-30 254.8 26.8 318 357-752 12-358 (942)
93 KOG0647 mRNA export protein (c 99.9 2E-25 4.4E-30 213.9 26.3 248 356-649 25-282 (347)
94 KOG0274 Cdc4 and related F-box 99.9 2.4E-25 5.1E-30 249.3 31.3 287 418-870 206-494 (537)
95 KOG0772 Uncharacterized conser 99.9 3.7E-26 8E-31 233.8 22.2 299 679-1047 176-489 (641)
96 KOG0300 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 215.3 24.3 296 350-749 139-476 (481)
97 KOG2096 WD40 repeat protein [G 99.9 2.8E-25 6E-30 214.0 26.2 307 611-991 81-400 (420)
98 PTZ00421 coronin; Provisional 99.9 1.4E-24 3E-29 243.6 36.3 265 719-1002 20-299 (493)
99 KOG0277 Peroxisomal targeting 99.9 3.4E-26 7.4E-31 213.6 19.2 251 352-647 54-308 (311)
100 PTZ00421 coronin; Provisional 99.9 7E-25 1.5E-29 245.9 33.6 264 357-651 19-293 (493)
101 KOG2096 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 209.3 26.3 314 415-857 81-401 (420)
102 KOG0305 Anaphase promoting com 99.9 5.1E-25 1.1E-29 235.8 25.4 277 362-702 181-463 (484)
103 KOG0294 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 208.1 26.2 242 782-1049 39-284 (362)
104 KOG0305 Anaphase promoting com 99.9 6.3E-25 1.4E-29 235.2 24.2 254 346-650 204-463 (484)
105 PTZ00420 coronin; Provisional 99.9 7.6E-24 1.7E-28 237.9 33.6 235 377-650 50-295 (568)
106 KOG0647 mRNA export protein (c 99.9 3.2E-24 7E-29 205.7 25.2 288 416-805 23-312 (347)
107 KOG0301 Phospholipase A2-activ 99.9 1.5E-24 3.1E-29 230.7 25.0 238 354-648 10-249 (745)
108 KOG0308 Conserved WD40 repeat- 99.9 2.9E-25 6.3E-30 234.0 19.4 373 419-1002 20-402 (735)
109 KOG0289 mRNA splicing factor [ 99.9 8.6E-24 1.9E-28 212.4 27.1 279 620-992 221-505 (506)
110 KOG0264 Nucleosome remodeling 99.9 1.6E-24 3.4E-29 220.4 22.2 270 349-649 115-405 (422)
111 KOG0268 Sof1-like rRNA process 99.9 4.1E-25 8.8E-30 216.8 17.1 283 416-749 62-345 (433)
112 KOG1963 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 221.9 39.1 518 425-1052 21-589 (792)
113 PTZ00420 coronin; Provisional 99.9 2.1E-23 4.5E-28 234.4 32.4 242 351-630 67-318 (568)
114 KOG0299 U3 snoRNP-associated p 99.9 5.2E-24 1.1E-28 216.1 24.2 293 415-805 137-444 (479)
115 KOG0300 WD40 repeat-containing 99.9 1.4E-23 3E-28 201.7 23.8 306 460-901 143-477 (481)
116 KOG0641 WD40 repeat protein [G 99.9 2.8E-22 6E-27 183.6 30.8 301 619-993 33-349 (350)
117 KOG0289 mRNA splicing factor [ 99.9 2.3E-23 5E-28 209.3 25.9 284 358-699 219-505 (506)
118 KOG0294 WD40 repeat-containing 99.9 6.7E-23 1.4E-27 198.0 27.7 248 456-860 34-283 (362)
119 KOG1332 Vesicle coat complex C 99.9 8.5E-24 1.8E-28 196.5 18.1 257 356-648 9-286 (299)
120 KOG0268 Sof1-like rRNA process 99.9 1.6E-24 3.5E-29 212.6 14.1 287 353-703 61-348 (433)
121 KOG0301 Phospholipase A2-activ 99.9 4E-23 8.8E-28 219.8 24.4 274 717-1046 12-288 (745)
122 KOG1538 Uncharacterized conser 99.9 1.9E-22 4.1E-27 212.4 29.0 494 360-945 14-520 (1081)
123 KOG1332 Vesicle coat complex C 99.9 1E-23 2.2E-28 196.0 16.7 265 415-700 6-286 (299)
124 KOG1274 WD40 repeat protein [G 99.9 4.7E-20 1E-24 203.2 46.6 252 356-649 11-263 (933)
125 KOG1963 WD40 repeat protein [G 99.9 9.4E-21 2E-25 208.6 40.1 516 359-955 17-589 (792)
126 KOG1273 WD40 repeat protein [G 99.9 3E-22 6.5E-27 193.0 24.8 295 423-859 26-323 (405)
127 KOG1036 Mitotic spindle checkp 99.9 4.6E-22 1E-26 192.2 24.9 272 357-690 12-294 (323)
128 KOG2055 WD40 repeat protein [G 99.9 4E-22 8.7E-27 202.3 25.3 291 619-993 214-512 (514)
129 KOG0639 Transducin-like enhanc 99.9 8.3E-23 1.8E-27 208.4 20.4 282 718-1045 418-703 (705)
130 KOG0321 WD40 repeat-containing 99.9 7.2E-23 1.6E-27 215.7 20.3 436 426-997 55-535 (720)
131 KOG4283 Transcription-coupled 99.9 4.2E-22 9.2E-27 190.0 23.7 323 354-748 39-364 (397)
132 KOG0646 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 204.6 23.2 215 420-662 81-320 (476)
133 KOG1274 WD40 repeat protein [G 99.9 9.4E-22 2E-26 216.4 28.5 250 718-994 12-263 (933)
134 KOG0639 Transducin-like enhanc 99.9 1.2E-22 2.7E-27 207.2 18.7 274 679-992 428-703 (705)
135 KOG0264 Nucleosome remodeling 99.9 2.2E-22 4.8E-27 204.9 20.3 234 349-604 168-404 (422)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-20 4.9E-25 204.2 37.9 279 587-1002 2-288 (300)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-20 6E-25 203.5 37.7 294 432-880 1-300 (300)
138 KOG1036 Mitotic spindle checkp 99.9 2.5E-21 5.5E-26 187.1 24.6 283 417-740 10-295 (323)
139 KOG4283 Transcription-coupled 99.9 5.9E-21 1.3E-25 182.3 26.4 308 416-857 39-364 (397)
140 KOG1273 WD40 repeat protein [G 99.9 2.3E-21 5E-26 186.9 23.5 299 346-701 12-323 (405)
141 KOG0646 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 198.9 22.9 297 484-883 12-332 (476)
142 KOG0650 WD40 repeat nucleolar 99.9 2.6E-21 5.7E-26 202.2 23.7 314 458-897 393-732 (733)
143 KOG2055 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 192.1 25.2 292 465-858 213-512 (514)
144 KOG1538 Uncharacterized conser 99.9 3.1E-20 6.8E-25 195.8 29.1 232 422-698 14-250 (1081)
145 KOG4328 WD40 protein [Function 99.9 5.5E-21 1.2E-25 194.0 22.3 295 357-699 185-494 (498)
146 KOG0321 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 200.9 23.3 290 732-1049 65-394 (720)
147 KOG0267 Microtubule severing p 99.9 4E-22 8.8E-27 213.0 10.5 236 355-640 25-260 (825)
148 KOG0650 WD40 repeat nucleolar 99.9 2.7E-20 5.8E-25 194.7 23.5 322 568-990 395-732 (733)
149 KOG0267 Microtubule severing p 99.9 4.5E-22 9.8E-27 212.6 10.1 237 416-692 24-260 (825)
150 KOG0269 WD40 repeat-containing 99.9 2E-20 4.3E-25 202.0 19.0 284 680-995 49-342 (839)
151 KOG1009 Chromatin assembly com 99.8 3.3E-19 7.1E-24 178.7 25.8 171 357-541 12-195 (434)
152 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-17 7.9E-22 189.9 47.0 372 353-901 60-443 (466)
153 KOG0302 Ribosome Assembly prot 99.8 1.5E-19 3.2E-24 179.1 21.8 269 348-645 141-435 (440)
154 KOG0269 WD40 repeat-containing 99.8 1.3E-20 2.8E-25 203.3 15.6 244 360-650 89-342 (839)
155 KOG2445 Nuclear pore complex c 99.8 1.8E-18 3.8E-23 167.0 27.3 285 415-749 8-318 (361)
156 KOG1034 Transcriptional repres 99.8 2.1E-19 4.5E-24 174.9 20.8 301 718-1047 37-384 (385)
157 KOG2445 Nuclear pore complex c 99.8 1.3E-18 2.7E-23 168.0 25.9 260 355-648 10-318 (361)
158 KOG0270 WD40 repeat-containing 99.8 1.4E-19 3E-24 183.5 18.8 255 370-655 192-456 (463)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-18 2.9E-23 177.8 24.8 292 685-1025 5-303 (673)
160 KOG0302 Ribosome Assembly prot 99.8 2.9E-19 6.4E-24 176.9 19.0 229 348-601 201-435 (440)
161 KOG0270 WD40 repeat-containing 99.8 3.5E-19 7.7E-24 180.5 20.0 238 431-702 191-451 (463)
162 KOG4378 Nuclear protein COP1 [ 99.8 3.8E-19 8.2E-24 181.8 19.7 287 320-671 13-301 (673)
163 KOG1009 Chromatin assembly com 99.8 2.8E-18 6.1E-23 172.1 25.4 339 420-905 13-377 (434)
164 KOG4328 WD40 protein [Function 99.8 1.8E-18 4E-23 175.9 24.4 312 498-858 175-495 (498)
165 COG2319 FOG: WD40 repeat [Gene 99.8 3.9E-16 8.5E-21 181.2 47.1 369 460-994 60-443 (466)
166 KOG1034 Transcriptional repres 99.8 4.9E-18 1.1E-22 165.4 22.3 306 415-748 33-382 (385)
167 KOG1524 WD40 repeat-containing 99.8 2.9E-17 6.3E-22 169.7 29.1 506 356-1049 12-526 (737)
168 KOG4497 Uncharacterized conser 99.8 4.8E-18 1E-22 165.1 21.6 406 363-893 13-425 (447)
169 KOG0307 Vesicle coat complex C 99.8 2.6E-19 5.7E-24 202.8 15.0 280 318-650 38-329 (1049)
170 KOG1310 WD40 repeat protein [G 99.8 4.4E-18 9.6E-23 176.2 21.6 223 460-705 45-308 (758)
171 KOG2919 Guanine nucleotide-bin 99.8 3.4E-17 7.4E-22 159.1 25.1 230 729-984 121-361 (406)
172 KOG1912 WD40 repeat protein [G 99.8 1E-15 2.3E-20 165.3 37.7 490 357-953 14-555 (1062)
173 KOG0303 Actin-binding protein 99.8 2.7E-17 5.8E-22 164.1 22.7 217 415-660 76-306 (472)
174 KOG0322 G-protein beta subunit 99.8 2.2E-17 4.9E-22 155.9 18.9 308 500-899 5-322 (323)
175 KOG2919 Guanine nucleotide-bin 99.8 5.4E-17 1.2E-21 157.7 22.0 280 468-901 52-368 (406)
176 KOG0303 Actin-binding protein 99.8 4.8E-17 1E-21 162.3 20.6 245 346-629 69-320 (472)
177 KOG0322 G-protein beta subunit 99.8 3.6E-17 7.8E-22 154.5 18.4 310 414-857 8-322 (323)
178 KOG4227 WD40 repeat protein [G 99.8 1.4E-16 3E-21 158.2 23.2 121 415-542 51-180 (609)
179 KOG0644 Uncharacterized conser 99.8 1.3E-18 2.7E-23 188.9 9.2 284 350-702 182-470 (1113)
180 KOG0307 Vesicle coat complex C 99.7 1.6E-17 3.4E-22 188.5 16.4 253 718-1049 63-330 (1049)
181 KOG4497 Uncharacterized conser 99.7 3.3E-16 7.2E-21 152.5 22.9 396 425-941 13-423 (447)
182 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 141.1 26.3 288 720-1043 11-313 (325)
183 KOG1912 WD40 repeat protein [G 99.7 2.3E-15 5E-20 162.7 30.6 573 345-997 41-745 (1062)
184 KOG1188 WD40 repeat protein [G 99.7 1.7E-16 3.7E-21 155.9 19.9 287 433-748 41-345 (376)
185 PRK11028 6-phosphogluconolacto 99.7 3.1E-15 6.7E-20 164.7 31.6 273 686-993 6-304 (330)
186 KOG0642 Cell-cycle nuclear pro 99.7 5.9E-17 1.3E-21 169.6 16.5 229 415-650 289-563 (577)
187 KOG1310 WD40 repeat protein [G 99.7 4.5E-16 9.8E-21 161.5 22.6 224 415-652 45-307 (758)
188 KOG0644 Uncharacterized conser 99.7 1.1E-17 2.4E-22 181.8 11.3 284 416-903 186-471 (1113)
189 KOG2110 Uncharacterized conser 99.7 3.1E-15 6.8E-20 148.8 26.3 241 786-1049 5-251 (391)
190 KOG4227 WD40 repeat protein [G 99.7 6.4E-16 1.4E-20 153.5 21.4 323 353-747 51-385 (609)
191 PRK11028 6-phosphogluconolacto 99.7 6.5E-15 1.4E-19 162.1 32.2 252 787-1054 35-312 (330)
192 KOG1188 WD40 repeat protein [G 99.7 5.4E-16 1.2E-20 152.4 20.3 276 373-700 42-346 (376)
193 KOG1524 WD40 repeat-containing 99.7 2.6E-15 5.5E-20 155.6 26.0 179 353-574 98-277 (737)
194 KOG1007 WD repeat protein TSSC 99.7 4.2E-16 9.1E-21 149.2 18.3 228 806-1047 39-290 (370)
195 KOG1007 WD repeat protein TSSC 99.7 1.2E-15 2.6E-20 146.1 20.9 212 412-649 55-290 (370)
196 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3.1E-20 169.0 23.9 260 353-650 237-518 (555)
197 KOG1334 WD40 repeat protein [G 99.7 1.8E-16 3.9E-21 162.7 14.7 322 460-861 137-469 (559)
198 KOG1517 Guanine nucleotide bin 99.7 5E-15 1.1E-19 165.6 27.0 303 576-996 1066-1384(1387)
199 KOG1517 Guanine nucleotide bin 99.7 2.9E-15 6.2E-20 167.5 24.9 305 466-861 1065-1384(1387)
200 KOG1334 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 159.5 16.7 309 353-701 137-467 (559)
201 KOG1587 Cytoplasmic dynein int 99.7 1.2E-14 2.7E-19 161.7 26.6 285 442-901 222-517 (555)
202 KOG1523 Actin-related protein 99.7 1E-14 2.2E-19 142.3 22.3 251 358-635 10-266 (361)
203 KOG0649 WD40 repeat protein [G 99.7 2.5E-14 5.5E-19 133.7 23.8 251 360-648 12-274 (325)
204 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-15 2.4E-20 160.3 16.2 246 785-1049 293-564 (577)
205 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3E-20 154.5 16.0 201 831-1049 148-357 (398)
206 KOG1523 Actin-related protein 99.7 8.8E-15 1.9E-19 142.7 19.6 213 420-655 10-243 (361)
207 KOG0974 WD-repeat protein WDR6 99.6 2.9E-12 6.3E-17 144.9 41.7 198 359-605 88-289 (967)
208 KOG0290 Conserved WD40 repeat- 99.6 1.8E-14 4E-19 138.3 20.1 249 353-638 91-356 (364)
209 KOG0974 WD-repeat protein WDR6 99.6 3.9E-12 8.4E-17 143.9 40.9 150 364-542 139-289 (967)
210 KOG0771 Prolactin regulatory e 99.6 4.1E-15 8.8E-20 151.2 14.7 199 790-994 148-355 (398)
211 PRK01742 tolB translocation pr 99.6 2.8E-14 6E-19 161.7 23.4 221 353-629 198-426 (429)
212 COG4946 Uncharacterized protei 99.6 3.7E-11 7.9E-16 123.5 42.9 435 366-890 44-508 (668)
213 KOG0290 Conserved WD40 repeat- 99.6 1E-13 2.2E-18 133.3 22.3 288 422-744 46-360 (364)
214 PF02239 Cytochrom_D1: Cytochr 99.6 6.1E-13 1.3E-17 145.0 31.5 326 525-958 8-356 (369)
215 PRK01742 tolB translocation pr 99.6 1.2E-13 2.7E-18 156.5 27.0 225 380-662 183-416 (429)
216 KOG2139 WD40 repeat protein [G 99.6 2E-13 4.3E-18 135.3 23.9 265 358-650 98-385 (445)
217 KOG2110 Uncharacterized conser 99.6 7.9E-13 1.7E-17 132.0 28.0 238 358-650 5-250 (391)
218 KOG1240 Protein kinase contain 99.6 3.3E-13 7.2E-18 153.9 28.4 212 416-651 1044-1276(1431)
219 PF02239 Cytochrom_D1: Cytochr 99.6 4.8E-12 1E-16 138.0 36.4 328 373-905 8-352 (369)
220 KOG1240 Protein kinase contain 99.6 2.1E-13 4.6E-18 155.5 26.1 269 351-651 1041-1337(1431)
221 KOG2139 WD40 repeat protein [G 99.6 9.2E-13 2E-17 130.7 24.6 289 684-993 112-431 (445)
222 KOG2659 LisH motif-containing 99.6 3.2E-14 6.9E-19 135.1 12.1 168 4-183 25-205 (228)
223 KOG2321 WD40 repeat protein [G 99.5 8.9E-13 1.9E-17 138.5 21.7 276 674-995 55-345 (703)
224 KOG2394 WD40 protein DMR-N9 [G 99.5 3.4E-13 7.5E-18 140.5 18.1 268 626-904 131-456 (636)
225 KOG2394 WD40 protein DMR-N9 [G 99.5 1.4E-13 3E-18 143.4 15.0 155 357-518 218-383 (636)
226 KOG2111 Uncharacterized conser 99.5 4E-12 8.8E-17 124.5 22.6 241 788-1049 7-259 (346)
227 KOG2321 WD40 repeat protein [G 99.5 2.8E-12 6E-17 134.9 22.4 259 351-650 44-304 (703)
228 PRK03629 tolB translocation pr 99.5 3.8E-12 8.2E-17 143.8 25.6 221 353-628 193-427 (429)
229 KOG2041 WD40 repeat protein [G 99.5 3.4E-11 7.4E-16 129.5 30.5 550 356-995 12-621 (1189)
230 PF04762 IKI3: IKI3 family; I 99.5 1.4E-08 3E-13 123.3 55.4 539 357-998 74-689 (928)
231 KOG1832 HIV-1 Vpr-binding prot 99.5 5.8E-14 1.3E-18 153.7 8.0 301 168-635 1012-1318(1516)
232 PRK02889 tolB translocation pr 99.5 8E-12 1.7E-16 141.5 24.6 222 353-628 190-424 (427)
233 KOG2315 Predicted translation 99.5 1.7E-10 3.7E-15 122.0 31.8 349 595-1049 10-393 (566)
234 KOG1272 WD40-repeat-containing 99.5 4.3E-13 9.3E-18 137.3 12.2 232 358-646 129-360 (545)
235 KOG2111 Uncharacterized conser 99.5 2.9E-10 6.3E-15 111.7 31.1 237 361-650 8-258 (346)
236 PRK03629 tolB translocation pr 99.5 4.2E-11 9E-16 135.4 29.6 213 382-648 180-406 (429)
237 PRK04922 tolB translocation pr 99.4 1.2E-11 2.6E-16 140.7 24.9 221 353-628 198-432 (433)
238 KOG2315 Predicted translation 99.4 3.7E-10 8E-15 119.5 32.8 313 589-997 48-394 (566)
239 PRK05137 tolB translocation pr 99.4 2.2E-11 4.8E-16 138.7 25.9 220 353-628 196-432 (435)
240 PRK05137 tolB translocation pr 99.4 5.2E-11 1.1E-15 135.7 28.8 216 381-650 182-414 (435)
241 PF10282 Lactonase: Lactonase, 99.4 1E-09 2.2E-14 120.5 37.7 209 789-1000 89-331 (345)
242 KOG2041 WD40 repeat protein [G 99.4 7.2E-10 1.6E-14 119.6 34.7 481 418-1001 12-540 (1189)
243 PRK02889 tolB translocation pr 99.4 3.9E-11 8.4E-16 135.9 27.0 193 416-640 191-392 (427)
244 PF04762 IKI3: IKI3 family; I 99.4 9.7E-08 2.1E-12 116.1 57.3 521 358-993 21-639 (928)
245 KOG1272 WD40-repeat-containing 99.4 1.1E-12 2.4E-17 134.4 12.4 273 421-742 130-402 (545)
246 PRK04922 tolB translocation pr 99.4 7.3E-11 1.6E-15 134.3 28.3 215 381-649 184-412 (433)
247 COG5354 Uncharacterized protei 99.4 5E-10 1.1E-14 116.9 31.0 324 579-998 37-400 (561)
248 KOG1354 Serine/threonine prote 99.4 6.7E-11 1.4E-15 116.9 23.2 349 465-946 25-431 (433)
249 COG5354 Uncharacterized protei 99.4 4E-10 8.7E-15 117.6 30.0 361 417-892 29-421 (561)
250 PF08662 eIF2A: Eukaryotic tra 99.4 2.3E-11 4.9E-16 120.2 19.6 155 831-1002 9-187 (194)
251 PF10282 Lactonase: Lactonase, 99.4 5.7E-10 1.2E-14 122.6 32.3 251 786-1052 36-328 (345)
252 PRK01029 tolB translocation pr 99.4 7.5E-11 1.6E-15 132.5 25.7 241 321-629 165-425 (428)
253 KOG1409 Uncharacterized conser 99.4 4.9E-11 1.1E-15 118.0 19.5 328 582-994 32-395 (404)
254 KOG3881 Uncharacterized conser 99.4 7.8E-11 1.7E-15 118.8 20.7 257 355-650 52-322 (412)
255 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.5E-09 7.7E-14 112.3 34.3 205 790-1002 108-339 (352)
256 KOG3881 Uncharacterized conser 99.4 9.3E-11 2E-15 118.3 20.8 117 787-904 203-324 (412)
257 COG2706 3-carboxymuconate cycl 99.4 4.1E-09 8.8E-14 106.5 32.3 281 691-998 15-328 (346)
258 COG4946 Uncharacterized protei 99.3 2.9E-08 6.3E-13 102.7 37.5 171 797-982 331-507 (668)
259 PF08662 eIF2A: Eukaryotic tra 99.3 1.2E-10 2.6E-15 115.1 18.7 112 785-902 58-181 (194)
260 KOG2314 Translation initiation 99.3 1.7E-09 3.7E-14 113.8 27.7 322 577-994 213-574 (698)
261 PRK04792 tolB translocation pr 99.3 3.3E-10 7.3E-15 128.5 24.7 222 353-628 212-446 (448)
262 COG2706 3-carboxymuconate cycl 99.3 9.1E-09 2E-13 104.1 31.6 259 785-1059 38-334 (346)
263 PRK00178 tolB translocation pr 99.3 7E-10 1.5E-14 126.9 26.3 165 353-545 193-367 (430)
264 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.3E-13 107.5 32.1 237 794-1049 53-333 (352)
265 TIGR02800 propeller_TolB tol-p 99.2 2.2E-09 4.8E-14 122.9 27.6 191 416-640 185-386 (417)
266 KOG2314 Translation initiation 99.2 3.9E-09 8.4E-14 111.2 25.8 293 721-1048 251-575 (698)
267 KOG1354 Serine/threonine prote 99.2 1.3E-09 2.9E-14 107.9 20.7 278 355-652 22-363 (433)
268 TIGR02800 propeller_TolB tol-p 99.2 1.2E-09 2.7E-14 125.0 24.1 162 353-543 184-356 (417)
269 KOG4547 WD40 repeat-containing 99.2 3.1E-09 6.7E-14 113.7 23.2 188 796-994 3-221 (541)
270 PRK04792 tolB translocation pr 99.2 1.2E-08 2.7E-13 115.8 29.1 198 416-647 213-424 (448)
271 PRK00178 tolB translocation pr 99.2 1.3E-08 2.9E-13 116.4 29.3 199 416-648 194-406 (430)
272 PRK01029 tolB translocation pr 99.2 9.9E-09 2.2E-13 115.5 27.3 219 381-650 165-405 (428)
273 KOG1409 Uncharacterized conser 99.1 2E-09 4.4E-14 106.8 15.8 351 460-859 19-395 (404)
274 KOG4547 WD40 repeat-containing 99.1 8.8E-09 1.9E-13 110.4 21.7 194 429-649 2-221 (541)
275 TIGR03300 assembly_YfgL outer 99.1 6.4E-08 1.4E-12 108.8 28.6 304 524-897 66-376 (377)
276 KOG0280 Uncharacterized conser 99.1 2E-08 4.2E-13 97.9 20.1 199 789-995 124-335 (339)
277 PLN02919 haloacid dehalogenase 99.0 1.4E-07 3E-12 117.2 30.5 257 789-1049 570-891 (1057)
278 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.8E-14 113.1 11.5 290 416-745 731-1032(1034)
279 TIGR03300 assembly_YfgL outer 99.0 3.3E-07 7.2E-12 103.0 30.5 192 431-651 64-262 (377)
280 PRK04043 tolB translocation pr 99.0 1.1E-07 2.4E-12 106.2 26.0 156 359-544 188-360 (419)
281 KOG0280 Uncharacterized conser 99.0 3.7E-08 7.9E-13 96.0 19.0 191 358-565 69-265 (339)
282 KOG1064 RAVE (regulator of V-A 99.0 8.8E-09 1.9E-13 122.7 16.5 215 588-903 2182-2401(2439)
283 KOG1064 RAVE (regulator of V-A 99.0 3.7E-09 8E-14 125.8 13.3 196 357-614 2207-2408(2439)
284 PLN02919 haloacid dehalogenase 99.0 5.6E-07 1.2E-11 111.9 32.6 274 362-650 571-890 (1057)
285 KOG3914 WD repeat protein WDR4 98.9 1.5E-08 3.3E-13 103.4 14.0 165 360-550 64-232 (390)
286 KOG3617 WD40 and TPR repeat-co 98.9 3.9E-07 8.5E-12 100.9 23.1 114 358-498 15-132 (1416)
287 PRK04043 tolB translocation pr 98.8 7.5E-07 1.6E-11 99.6 25.4 189 788-994 189-401 (419)
288 PF15492 Nbas_N: Neuroblastoma 98.8 1.5E-06 3.3E-11 85.6 23.4 206 792-1002 3-268 (282)
289 KOG4190 Uncharacterized conser 98.8 3E-08 6.5E-13 104.1 11.9 249 353-646 730-986 (1034)
290 KOG4532 WD40-like repeat conta 98.8 1.3E-06 2.8E-11 84.2 20.8 237 799-1047 85-332 (344)
291 PF07433 DUF1513: Protein of u 98.8 4E-06 8.8E-11 85.7 25.2 247 360-642 6-279 (305)
292 KOG4649 PQQ (pyrrolo-quinoline 98.8 4.5E-05 9.7E-10 73.7 30.3 145 471-643 16-160 (354)
293 PF07433 DUF1513: Protein of u 98.8 7.9E-06 1.7E-10 83.6 27.0 208 788-1002 6-256 (305)
294 KOG3914 WD repeat protein WDR4 98.8 8.6E-08 1.9E-12 98.0 12.8 158 873-1049 65-226 (390)
295 KOG0309 Conserved WD40 repeat- 98.7 2.3E-07 5E-12 101.3 16.0 302 355-701 21-340 (1081)
296 PRK11138 outer membrane biogen 98.7 1.2E-05 2.6E-10 90.7 29.8 319 524-899 70-393 (394)
297 PF15492 Nbas_N: Neuroblastoma 98.7 1.3E-05 2.8E-10 79.2 25.3 228 362-650 1-261 (282)
298 COG5170 CDC55 Serine/threonine 98.7 9.6E-07 2.1E-11 86.7 17.4 235 620-901 28-310 (460)
299 COG5170 CDC55 Serine/threonine 98.7 2.2E-07 4.9E-12 91.0 12.6 263 419-698 25-365 (460)
300 PF13360 PQQ_2: PQQ-like domai 98.7 6.8E-06 1.5E-10 85.9 24.7 224 806-1053 2-237 (238)
301 KOG4532 WD40-like repeat conta 98.7 3E-06 6.6E-11 81.7 19.2 169 373-548 86-289 (344)
302 PF08450 SGL: SMP-30/Gluconola 98.7 3.1E-05 6.8E-10 81.0 29.3 217 791-1034 4-243 (246)
303 PF08450 SGL: SMP-30/Gluconola 98.6 0.00015 3.4E-09 75.8 32.8 229 362-637 3-244 (246)
304 KOG1897 Damage-specific DNA bi 98.6 0.0033 7.2E-08 72.7 49.9 465 467-990 489-1001(1096)
305 KOG4714 Nucleoporin [Nuclear s 98.6 8.6E-07 1.9E-11 85.1 12.8 210 361-605 39-255 (319)
306 KOG3617 WD40 and TPR repeat-co 98.6 7.9E-06 1.7E-10 91.0 21.9 325 468-849 18-376 (1416)
307 PRK11138 outer membrane biogen 98.6 8.1E-05 1.8E-09 84.0 31.3 312 481-857 71-393 (394)
308 KOG2695 WD40 repeat protein [G 98.6 3.9E-07 8.5E-12 90.9 10.3 166 364-553 217-388 (425)
309 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00016 3.4E-09 70.0 26.9 299 365-701 17-352 (354)
310 PF10607 CLTH: CTLH/CRA C-term 98.5 3.3E-07 7.1E-12 86.5 9.2 134 38-182 5-141 (145)
311 KOG0309 Conserved WD40 repeat- 98.5 7.7E-07 1.7E-11 97.3 12.7 219 353-605 109-340 (1081)
312 PRK02888 nitrous-oxide reducta 98.5 7.8E-06 1.7E-10 91.4 20.8 136 839-982 287-450 (635)
313 KOG1897 Damage-specific DNA bi 98.5 0.0053 1.1E-07 71.2 54.5 591 353-1047 301-943 (1096)
314 KOG4714 Nucleoporin [Nuclear s 98.5 2.4E-06 5.3E-11 82.1 14.0 149 729-901 99-255 (319)
315 KOG0882 Cyclophilin-related pe 98.5 4.2E-06 9.2E-11 86.7 15.8 299 718-1043 8-369 (558)
316 PF00400 WD40: WD domain, G-be 98.5 4.6E-07 1E-11 63.0 6.4 39 860-898 1-39 (39)
317 PF06433 Me-amine-dh_H: Methyl 98.5 0.00031 6.8E-09 73.0 29.3 204 790-1002 98-329 (342)
318 PF13360 PQQ_2: PQQ-like domai 98.5 2.8E-05 6E-10 81.3 22.7 227 380-652 2-234 (238)
319 KOG0396 Uncharacterized conser 98.5 7.9E-07 1.7E-11 90.1 10.1 121 5-126 115-243 (389)
320 KOG1920 IkappaB kinase complex 98.4 0.00064 1.4E-08 80.2 33.5 238 575-860 69-324 (1265)
321 KOG2695 WD40 repeat protein [G 98.4 9.5E-07 2.1E-11 88.3 8.6 151 844-1002 228-385 (425)
322 KOG1832 HIV-1 Vpr-binding prot 98.4 3.2E-07 6.9E-12 102.2 5.5 199 817-1049 1091-1294(1516)
323 KOG1920 IkappaB kinase complex 98.4 7.7E-05 1.7E-09 87.6 24.7 239 719-997 68-326 (1265)
324 PRK02888 nitrous-oxide reducta 98.4 2.9E-05 6.3E-10 87.0 20.1 224 796-1047 139-405 (635)
325 KOG1275 PAB-dependent poly(A) 98.3 1.1E-05 2.5E-10 91.0 15.4 180 798-991 147-340 (1118)
326 KOG0882 Cyclophilin-related pe 98.3 5.3E-06 1.1E-10 86.0 11.8 213 826-1049 8-234 (558)
327 KOG1645 RING-finger-containing 98.3 7.2E-05 1.6E-09 76.9 19.0 81 415-500 188-269 (463)
328 PF00400 WD40: WD domain, G-be 98.3 2.5E-06 5.4E-11 59.3 6.2 34 415-448 6-39 (39)
329 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0012 2.7E-08 72.9 30.2 300 367-739 1-347 (353)
330 KOG3621 WD40 repeat-containing 98.2 0.0002 4.2E-09 79.5 20.8 199 621-901 36-245 (726)
331 KOG2066 Vacuolar assembly/sort 98.2 6E-05 1.3E-09 84.5 16.9 189 828-1046 40-233 (846)
332 PF06433 Me-amine-dh_H: Methyl 98.1 0.00085 1.8E-08 69.8 23.8 247 594-868 65-330 (342)
333 PF08596 Lgl_C: Lethal giant l 98.1 0.0008 1.7E-08 74.0 24.6 268 360-647 3-334 (395)
334 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00088 1.9E-08 74.1 25.3 295 595-937 22-344 (353)
335 PF08513 LisH: LisH; InterPro 98.1 4.5E-06 9.8E-11 51.1 3.9 27 6-32 1-27 (27)
336 KOG2114 Vacuolar assembly/sort 98.1 0.00047 1E-08 78.2 22.0 216 624-873 29-259 (933)
337 KOG2114 Vacuolar assembly/sort 98.1 0.00026 5.5E-09 80.2 19.5 203 833-1049 29-246 (933)
338 cd00216 PQQ_DH Dehydrogenases 98.0 0.0043 9.2E-08 71.8 30.2 210 432-650 61-321 (488)
339 PF11768 DUF3312: Protein of u 98.0 7.2E-05 1.6E-09 81.8 14.0 83 348-452 249-331 (545)
340 PF14583 Pectate_lyase22: Olig 98.0 0.0074 1.6E-07 64.3 28.1 287 364-699 41-380 (386)
341 smart00668 CTLH C-terminal to 98.0 7.9E-06 1.7E-10 62.7 4.4 52 38-90 5-56 (58)
342 KOG2066 Vacuolar assembly/sort 98.0 0.00058 1.3E-08 76.9 20.0 187 720-949 40-233 (846)
343 KOG3621 WD40 repeat-containing 98.0 0.00069 1.5E-08 75.3 20.1 121 357-498 32-155 (726)
344 KOG1645 RING-finger-containing 98.0 0.0003 6.5E-09 72.5 16.1 230 809-1049 175-422 (463)
345 KOG1275 PAB-dependent poly(A) 98.0 0.00016 3.4E-09 82.2 15.3 185 431-647 146-341 (1118)
346 cd00216 PQQ_DH Dehydrogenases 97.9 0.0095 2.1E-07 69.0 30.6 157 833-1002 222-433 (488)
347 COG0823 TolB Periplasmic compo 97.9 0.00047 1E-08 76.7 18.4 164 353-544 187-361 (425)
348 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0066 1.4E-07 68.0 27.5 228 792-1045 34-286 (410)
349 PF06977 SdiA-regulated: SdiA- 97.9 0.014 3E-07 59.6 26.9 163 356-540 19-200 (248)
350 smart00667 LisH Lissencephaly 97.9 1.9E-05 4.1E-10 52.7 4.3 32 4-35 2-33 (34)
351 PF06977 SdiA-regulated: SdiA- 97.9 0.0018 4E-08 65.8 20.1 215 821-1043 15-247 (248)
352 PF04053 Coatomer_WDAD: Coatom 97.9 0.0019 4.1E-08 72.1 22.1 224 719-995 32-264 (443)
353 PF11768 DUF3312: Protein of u 97.9 0.00022 4.7E-09 78.1 13.9 129 351-502 198-334 (545)
354 PF04053 Coatomer_WDAD: Coatom 97.8 0.0044 9.6E-08 69.2 24.4 221 786-1049 32-265 (443)
355 PF14583 Pectate_lyase22: Olig 97.8 0.011 2.4E-07 63.1 25.8 290 723-1047 39-382 (386)
356 COG0823 TolB Periplasmic compo 97.8 0.0017 3.7E-08 72.3 19.4 175 808-997 174-362 (425)
357 PF08596 Lgl_C: Lethal giant l 97.8 0.0037 8E-08 68.9 21.7 273 721-1036 3-326 (395)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.15 3.2E-06 59.4 35.5 61 807-869 441-501 (527)
359 COG3391 Uncharacterized conser 97.7 0.0098 2.1E-07 66.2 24.9 207 788-1002 75-292 (381)
360 KOG1008 Uncharacterized conser 97.6 2.1E-05 4.5E-10 85.6 1.7 204 357-604 55-275 (783)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.11 2.4E-06 60.3 32.0 149 851-1002 272-499 (527)
362 KOG2817 Predicted E3 ubiquitin 97.6 0.00054 1.2E-08 71.2 11.1 108 6-115 117-237 (394)
363 PF08553 VID27: VID27 cytoplas 97.5 0.0059 1.3E-07 71.9 20.2 149 478-647 493-646 (794)
364 PF02897 Peptidase_S9_N: Proly 97.5 0.074 1.6E-06 60.7 28.7 248 361-651 126-407 (414)
365 COG3490 Uncharacterized protei 97.5 0.056 1.2E-06 53.9 22.5 236 789-1044 70-346 (366)
366 PRK13616 lipoprotein LpqB; Pro 97.4 0.0068 1.5E-07 70.6 19.3 189 787-988 350-563 (591)
367 COG3386 Gluconolactonase [Carb 97.4 0.052 1.1E-06 57.6 23.7 232 364-638 30-275 (307)
368 PRK13616 lipoprotein LpqB; Pro 97.4 0.024 5.2E-07 66.2 22.7 149 828-993 350-525 (591)
369 COG3386 Gluconolactonase [Carb 97.4 0.051 1.1E-06 57.6 23.1 220 792-1035 30-274 (307)
370 PF04841 Vps16_N: Vps16, N-ter 97.4 0.2 4.4E-06 56.2 29.2 136 793-957 185-322 (410)
371 COG3391 Uncharacterized conser 97.3 0.34 7.5E-06 54.0 30.3 256 351-650 23-285 (381)
372 PF02897 Peptidase_S9_N: Proly 97.3 0.12 2.7E-06 58.9 27.2 240 789-1049 126-407 (414)
373 PF00780 CNH: CNH domain; Int 97.3 0.1 2.2E-06 55.6 25.0 232 729-1002 5-264 (275)
374 COG3490 Uncharacterized protei 97.3 0.038 8.2E-07 55.0 18.9 230 598-856 93-346 (366)
375 KOG1008 Uncharacterized conser 97.2 0.00016 3.4E-09 79.0 2.5 199 786-993 56-275 (783)
376 KOG4640 Anaphase-promoting com 97.2 0.0014 3E-08 72.1 9.3 94 358-474 20-114 (665)
377 PF08553 VID27: VID27 cytoplas 97.1 0.029 6.2E-07 66.4 19.2 146 839-992 492-646 (794)
378 PF00780 CNH: CNH domain; Int 97.1 0.2 4.3E-06 53.4 24.6 221 796-1049 5-258 (275)
379 PF03178 CPSF_A: CPSF A subuni 97.0 0.22 4.8E-06 54.4 24.9 219 381-646 2-263 (321)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.26 5.6E-06 54.3 24.7 93 425-518 6-117 (415)
381 PF03178 CPSF_A: CPSF A subuni 97.0 0.11 2.4E-06 56.8 22.3 175 807-993 2-202 (321)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.24 5.1E-06 54.6 23.9 83 785-867 306-407 (415)
383 KOG2395 Protein involved in va 97.0 0.013 2.8E-07 63.3 13.3 147 479-647 346-499 (644)
384 KOG2079 Vacuolar assembly/sort 96.9 0.028 6.1E-07 66.1 16.9 100 373-497 101-203 (1206)
385 KOG4640 Anaphase-promoting com 96.9 0.0038 8.2E-08 68.8 9.1 93 828-929 21-114 (665)
386 smart00320 WD40 WD40 repeats. 96.9 0.002 4.4E-08 43.9 5.0 39 860-898 2-40 (40)
387 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.39 8.5E-06 53.1 24.3 286 587-901 38-361 (418)
388 PF05096 Glu_cyclase_2: Glutam 96.7 0.33 7.3E-06 49.3 20.3 187 787-982 45-249 (264)
389 KOG2444 WD40 repeat protein [G 96.6 0.0076 1.7E-07 58.1 7.6 108 885-1002 33-141 (238)
390 PF14870 PSII_BNR: Photosynthe 96.6 0.49 1.1E-05 50.0 21.6 159 824-990 141-301 (302)
391 PF10647 Gmad1: Lipoprotein Lp 96.6 0.35 7.6E-06 50.3 20.6 148 787-938 24-183 (253)
392 PF07995 GSDH: Glucose / Sorbo 96.5 1.3 2.8E-05 48.3 25.4 58 586-643 271-330 (331)
393 PHA02713 hypothetical protein; 96.5 0.24 5.1E-06 58.3 20.9 199 839-1062 303-547 (557)
394 TIGR03074 PQQ_membr_DH membran 96.5 3.3 7.1E-05 50.2 38.2 216 432-653 194-482 (764)
395 PRK10115 protease 2; Provision 96.5 1.8 4E-05 52.3 28.6 196 787-993 127-344 (686)
396 KOG2395 Protein involved in va 96.4 0.047 1E-06 59.2 13.2 144 842-992 348-499 (644)
397 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.14 2.9E-06 44.1 13.3 102 361-492 2-109 (111)
398 PF07995 GSDH: Glucose / Sorbo 96.4 1.2 2.6E-05 48.6 24.4 243 789-1041 4-330 (331)
399 PF15390 DUF4613: Domain of un 96.3 0.51 1.1E-05 52.5 20.0 161 828-997 20-190 (671)
400 smart00320 WD40 WD40 repeats. 96.3 0.011 2.3E-07 40.1 5.3 38 818-856 3-40 (40)
401 KOG4441 Proteins containing BT 96.2 0.55 1.2E-05 55.1 22.0 235 796-1057 283-555 (571)
402 PRK10115 protease 2; Provision 96.2 4.5 9.8E-05 49.0 30.1 115 359-496 127-254 (686)
403 PF05694 SBP56: 56kDa selenium 96.2 0.82 1.8E-05 49.6 20.6 191 791-982 134-392 (461)
404 KOG4499 Ca2+-binding protein R 96.1 1.1 2.3E-05 43.8 18.6 219 371-628 27-263 (310)
405 COG3204 Uncharacterized protei 96.0 1.8 3.8E-05 44.2 20.8 181 416-614 81-272 (316)
406 PF10647 Gmad1: Lipoprotein Lp 96.0 0.36 7.8E-06 50.2 17.2 150 829-986 25-188 (253)
407 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.43 9.2E-06 41.1 13.9 66 468-540 2-70 (111)
408 PF14870 PSII_BNR: Photosynthe 95.9 2.9 6.4E-05 44.2 29.2 232 788-1043 63-301 (302)
409 KOG1898 Splicing factor 3b, su 95.9 5.9 0.00013 47.6 29.8 105 792-901 939-1049(1205)
410 PHA02713 hypothetical protein; 95.8 0.48 1E-05 55.8 19.2 190 796-998 302-538 (557)
411 KOG2079 Vacuolar assembly/sort 95.8 0.026 5.6E-07 66.4 8.2 104 431-540 98-202 (1206)
412 COG3204 Uncharacterized protei 95.8 0.76 1.6E-05 46.8 17.1 172 866-1048 81-265 (316)
413 PF12894 Apc4_WD40: Anaphase-p 95.7 0.033 7.2E-07 39.7 5.5 33 420-453 11-43 (47)
414 TIGR03074 PQQ_membr_DH membran 95.7 7.4 0.00016 47.3 38.2 62 941-1002 641-719 (764)
415 PF12894 Apc4_WD40: Anaphase-p 95.6 0.033 7.1E-07 39.7 5.2 33 358-392 11-43 (47)
416 KOG1898 Splicing factor 3b, su 95.6 7.6 0.00017 46.8 38.2 112 925-1049 938-1051(1205)
417 KOG4499 Ca2+-binding protein R 95.5 2.7 5.9E-05 41.1 18.9 47 791-837 216-263 (310)
418 PF05694 SBP56: 56kDa selenium 95.3 1.5 3.3E-05 47.6 18.4 206 839-1049 86-345 (461)
419 KOG2444 WD40 repeat protein [G 95.3 0.046 1E-06 53.0 6.5 102 800-901 73-178 (238)
420 COG3823 Glutamine cyclotransfe 95.0 1.2 2.6E-05 42.7 14.7 178 797-981 55-247 (262)
421 PF05096 Glu_cyclase_2: Glutam 94.7 1.4 2.9E-05 45.0 15.5 158 872-1049 46-206 (264)
422 KOG1916 Nuclear protein, conta 94.7 0.05 1.1E-06 62.6 5.8 180 807-994 153-375 (1283)
423 KOG3616 Selective LIM binding 94.7 0.74 1.6E-05 52.1 14.5 91 856-959 324-415 (1636)
424 TIGR03118 PEPCTERM_chp_1 conse 94.6 6.5 0.00014 40.6 23.9 207 788-1002 24-288 (336)
425 PF14727 PHTB1_N: PTHB1 N-term 94.5 9.7 0.00021 42.4 30.0 283 731-1049 37-363 (418)
426 PF10168 Nup88: Nuclear pore c 94.5 10 0.00022 45.7 24.6 94 785-901 83-180 (717)
427 TIGR03118 PEPCTERM_chp_1 conse 94.4 7 0.00015 40.4 23.7 226 422-651 24-282 (336)
428 PRK13684 Ycf48-like protein; P 94.4 9.5 0.00021 41.7 28.3 156 827-992 172-330 (334)
429 KOG4441 Proteins containing BT 94.3 2.5 5.5E-05 49.7 19.0 195 790-998 326-551 (571)
430 KOG2280 Vacuolar assembly/sort 94.2 2.5 5.4E-05 48.8 17.5 147 849-1002 63-255 (829)
431 PRK13684 Ycf48-like protein; P 94.1 11 0.00024 41.2 29.4 157 870-1045 172-330 (334)
432 PF10168 Nup88: Nuclear pore c 94.1 6.1 0.00013 47.5 21.5 67 380-447 41-111 (717)
433 PF12234 Rav1p_C: RAVE protein 93.8 1.4 3.1E-05 51.1 15.2 124 823-948 25-155 (631)
434 COG4590 ABC-type uncharacteriz 93.8 1 2.2E-05 48.2 12.8 159 785-953 219-390 (733)
435 PHA02790 Kelch-like protein; P 93.8 3.3 7.2E-05 47.9 18.7 183 796-995 270-472 (480)
436 PHA03098 kelch-like protein; P 93.7 2.7 5.8E-05 49.8 18.3 187 796-997 293-515 (534)
437 PF12234 Rav1p_C: RAVE protein 93.5 2.1 4.6E-05 49.7 15.8 125 466-603 30-155 (631)
438 KOG3630 Nuclear pore complex, 93.2 1 2.2E-05 54.0 12.7 146 786-937 100-260 (1405)
439 KOG2247 WD40 repeat-containing 93.1 0.015 3.3E-07 62.2 -1.7 241 723-1000 38-287 (615)
440 COG3292 Predicted periplasmic 92.5 22 0.00047 40.1 24.1 71 420-498 164-234 (671)
441 PF15390 DUF4613: Domain of un 92.5 23 0.00049 40.2 25.2 119 418-541 54-186 (671)
442 TIGR02604 Piru_Ver_Nterm putat 92.5 3.4 7.4E-05 45.9 15.6 151 828-984 14-204 (367)
443 COG4257 Vgb Streptogramin lyas 92.5 14 0.00029 37.6 20.8 131 769-901 130-263 (353)
444 PF14761 HPS3_N: Hermansky-Pud 92.4 7.2 0.00016 38.3 15.4 148 841-992 29-213 (215)
445 PF07676 PD40: WD40-like Beta 92.4 0.42 9.1E-06 32.6 5.3 34 353-386 3-38 (39)
446 PF03022 MRJP: Major royal jel 92.3 14 0.00029 39.3 19.0 191 789-982 3-254 (287)
447 cd08044 TAF5_NTD2 TAF5_NTD2 is 92.3 0.36 7.9E-06 44.2 6.3 64 67-131 25-88 (133)
448 KOG2280 Vacuolar assembly/sort 92.3 11 0.00024 43.7 18.7 226 358-629 43-270 (829)
449 PHA03098 kelch-like protein; P 92.3 7.8 0.00017 45.9 19.3 152 881-1055 342-518 (534)
450 TIGR02604 Piru_Ver_Nterm putat 92.2 3.8 8.3E-05 45.5 15.6 148 871-1038 14-205 (367)
451 PLN00033 photosystem II stabil 92.1 23 0.0005 39.5 26.3 154 830-990 241-396 (398)
452 PF04494 TFIID_90kDa: WD40 ass 91.7 0.44 9.5E-06 44.2 6.1 61 67-128 36-96 (142)
453 COG5167 VID27 Protein involved 91.5 5.2 0.00011 43.9 14.3 150 475-647 476-631 (776)
454 PLN00033 photosystem II stabil 91.3 28 0.0006 38.8 26.3 151 873-1043 241-396 (398)
455 PF13449 Phytase-like: Esteras 91.2 26 0.00055 38.2 21.6 162 785-948 18-248 (326)
456 COG4257 Vgb Streptogramin lyas 90.9 20 0.00043 36.4 21.5 234 720-996 62-308 (353)
457 PF11725 AvrE: Pathogenicity f 90.8 29 0.00063 44.6 21.6 149 357-542 361-517 (1774)
458 PF10313 DUF2415: Uncharacteri 90.7 0.68 1.5E-05 32.0 4.6 32 359-390 1-34 (43)
459 KOG1896 mRNA cleavage and poly 90.6 53 0.0011 40.8 43.2 112 429-550 633-752 (1366)
460 KOG3630 Nuclear pore complex, 90.0 4.6 0.0001 48.9 13.5 99 788-888 157-261 (1405)
461 PF13449 Phytase-like: Esteras 90.0 11 0.00025 40.9 16.3 164 828-993 20-249 (326)
462 KOG1916 Nuclear protein, conta 89.9 0.72 1.6E-05 53.7 6.9 162 357-545 131-327 (1283)
463 PHA02790 Kelch-like protein; P 89.7 18 0.00038 42.0 18.4 185 839-1049 271-473 (480)
464 COG4590 ABC-type uncharacteriz 89.7 3.2 7E-05 44.6 10.8 171 818-997 211-390 (733)
465 PF10313 DUF2415: Uncharacteri 89.4 1.6 3.4E-05 30.2 5.5 32 421-452 1-35 (43)
466 PF08728 CRT10: CRT10; InterP 89.2 8.7 0.00019 45.4 14.9 132 512-647 103-245 (717)
467 PF14761 HPS3_N: Hermansky-Pud 89.1 25 0.00054 34.7 15.7 113 788-903 19-166 (215)
468 PF02333 Phytase: Phytase; In 88.5 42 0.00092 36.7 19.6 196 839-1049 67-293 (381)
469 KOG2377 Uncharacterized conser 88.4 13 0.00028 40.3 14.1 158 874-1049 26-188 (657)
470 KOG3616 Selective LIM binding 88.2 5.6 0.00012 45.5 11.9 59 679-747 23-81 (1636)
471 PF10214 Rrn6: RNA polymerase 88.2 77 0.0017 39.3 27.1 174 785-995 78-278 (765)
472 PF05935 Arylsulfotrans: Aryls 88.1 13 0.00028 43.0 15.6 130 926-1058 153-313 (477)
473 KOG1900 Nuclear pore complex, 88.1 12 0.00026 46.5 15.5 147 847-994 96-273 (1311)
474 PF08728 CRT10: CRT10; InterP 87.9 2.6 5.6E-05 49.5 9.6 136 360-497 102-246 (717)
475 PF05935 Arylsulfotrans: Aryls 87.8 23 0.00051 40.9 17.5 121 876-1005 153-313 (477)
476 KOG1983 Tomosyn and related SN 86.8 10 0.00022 47.8 14.5 60 931-997 209-268 (993)
477 COG3823 Glutamine cyclotransfe 86.8 11 0.00023 36.5 11.2 159 881-1058 55-217 (262)
478 KOG2377 Uncharacterized conser 85.1 16 0.00034 39.8 12.7 105 868-979 64-169 (657)
479 PF07569 Hira: TUP1-like enhan 85.0 4.4 9.5E-05 40.9 8.6 78 878-955 18-101 (219)
480 COG1520 FOG: WD40-like repeat 84.8 71 0.0015 35.6 23.6 205 366-615 65-279 (370)
481 KOG4659 Uncharacterized conser 84.7 1.2E+02 0.0026 38.2 30.3 448 414-949 341-826 (1899)
482 PF07569 Hira: TUP1-like enhan 83.8 5.9 0.00013 40.0 8.9 75 364-452 16-97 (219)
483 COG5167 VID27 Protein involved 83.6 24 0.00053 39.0 13.4 153 580-751 473-634 (776)
484 PF12657 TFIIIC_delta: Transcr 83.5 4.8 0.0001 39.0 7.9 31 421-451 86-122 (173)
485 PF10433 MMS1_N: Mono-function 83.2 1E+02 0.0022 36.1 41.0 80 798-880 418-503 (504)
486 TIGR03606 non_repeat_PQQ dehyd 83.1 90 0.0019 35.4 28.9 66 354-432 25-90 (454)
487 KOG1900 Nuclear pore complex, 82.9 13 0.00028 46.3 12.4 171 344-542 64-273 (1311)
488 KOG1983 Tomosyn and related SN 82.9 39 0.00084 42.7 17.1 36 357-393 34-69 (993)
489 PF02333 Phytase: Phytase; In 82.8 80 0.0017 34.7 21.8 199 430-650 66-292 (381)
490 TIGR03606 non_repeat_PQQ dehyd 82.7 28 0.0006 39.4 14.3 61 870-932 29-90 (454)
491 PRK13614 lipoprotein LpqB; Pro 81.6 1.1E+02 0.0023 36.1 18.8 161 829-995 344-520 (573)
492 COG5290 IkappaB kinase complex 81.4 41 0.0009 39.4 14.8 92 875-974 251-347 (1243)
493 PRK13615 lipoprotein LpqB; Pro 81.1 1.2E+02 0.0026 35.5 21.1 154 830-994 336-503 (557)
494 PF12657 TFIIIC_delta: Transcr 80.8 11 0.00024 36.6 9.3 31 871-901 86-122 (173)
495 smart00036 CNH Domain found in 80.8 86 0.0019 33.7 24.1 209 785-1002 41-279 (302)
496 PF12768 Rax2: Cortical protei 80.6 51 0.0011 34.7 14.5 90 382-495 17-121 (281)
497 PF14781 BBS2_N: Ciliary BBSom 80.4 45 0.00097 30.2 11.9 118 923-1052 1-131 (136)
498 TIGR02276 beta_rpt_yvtn 40-res 80.3 5.9 0.00013 27.3 5.4 29 368-396 1-29 (42)
499 PLN02193 nitrile-specifier pro 80.0 1.2E+02 0.0027 35.0 22.8 155 839-998 228-415 (470)
500 KOG4460 Nuclear pore complex, 79.9 41 0.00088 37.5 13.6 41 1016-1056 166-208 (741)
No 1
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-65 Score=490.77 Aligned_cols=491 Identities=20% Similarity=0.316 Sum_probs=419.8
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001415 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1082)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 80 (1082)
..+|||||.|||+|+.+.+++++||+|+++++| ++.|.+.|.+|+||.++..+++|++++ +-+..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHHH
Confidence 468999999999999999999999999999998 889999999999999999999995543 6889999999
Q ss_pred HHHHHhcCCHHHHHHHHHhc--cccccccCHHHHHHHHHHhccccccchhhhccCCCchHHHHHHHHHHHhhcccCCCcc
Q 001415 81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR 158 (1082)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1082)
.|||+|.++...|..+||+. +.-|++.+|++|-+|+.||..+.++..+.|.+ .+.+.+|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999975 66678889999999999999999999999876 35667778888888877765
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001415 159 DKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGP 238 (1082)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1082)
+||+||+.||+||++||+. .|-+||+++.++
T Consensus 155 -------VppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDL 185 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDL 185 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeee
Confidence 9999999999999999988 466779999999
Q ss_pred CCCCCCCCCCCccccccCCCCcccCCcccCccCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001415 239 FQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEIN 318 (1082)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~ 318 (1082)
|++..+ +...+++++|+++...|+|+.++++
T Consensus 186 FRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh~---------------------------------------- 216 (508)
T KOG0275|consen 186 FRGKAA---------MKDQEEERYPTQLARSIKFGQKSHV---------------------------------------- 216 (508)
T ss_pred ccchhh---------hhhhHhhhchHHhhhheecccccch----------------------------------------
Confidence 999874 3667889999999999998888775
Q ss_pred ccccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeec
Q 001415 319 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN 398 (1082)
Q Consensus 319 ~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~ 398 (1082)
.|..|||||+| |++|+.||.|.+||..+|+......
T Consensus 217 -------------------------------------------EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk 252 (508)
T KOG0275|consen 217 -------------------------------------------ECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK 252 (508)
T ss_pred -------------------------------------------hheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence 46679999995 9999999999999999998876433
Q ss_pred eeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEee-ccccCeeEEEecCCC
Q 001415 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPN 477 (1082)
Q Consensus 399 ~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~-~h~~~V~~l~fs~dg 477 (1082)
++.-| .+.-+.++|.|+.||.|...||+|+.||.|++|.+.+|.+++ .+. .|+..|+|+.||.|+
T Consensus 253 YQAqd-----------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 253 YQAQD-----------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred hhhhc-----------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence 33211 366788999999999999999999999999999999999998 454 899999999999999
Q ss_pred CceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCC--c
Q 001415 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--W 555 (1082)
Q Consensus 478 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~ 555 (1082)
. -+++++.|.++++.-+++|++++.++||...|+...|. ++|+.+++++.||+|++|+..+.++..++...+. .
T Consensus 319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~ 394 (508)
T KOG0275|consen 319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP 394 (508)
T ss_pred c--hhhcccccceEEEeccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence 9 58999999999999999999999999999999999875 5568999999999999999999888877665432 3
Q ss_pred eEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC-CCCCCcCeEEEcCCCCEEE
Q 001415 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLA 634 (1082)
Q Consensus 556 v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~ 634 (1082)
|.++-.-|. +...++++...++|+|-++. |+.++.+... ...+...++..+|.|.+++
T Consensus 395 vnsv~~~PK--------------------npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 395 VNSVILLPK--------------------NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ceeEEEcCC--------------------CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 444433333 23478999999999999974 6677776532 2233567888999999999
Q ss_pred EEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
+.+.|+.++.+...+| .+.+.+.-|...+. .++- .|..+.+++-+.||.+++|.
T Consensus 454 cigED~vlYCF~~~sG-~LE~tl~VhEkdvI--Gl~H-------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG-KLERTLPVHEKDVI--GLTH-------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEccCcEEEEEEeecC-ceeeeeeccccccc--cccc-------CcccchhhhhcccchhhhcC
Confidence 9999999999999998 67777777766554 2222 67788899999999999995
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-64 Score=494.68 Aligned_cols=492 Identities=21% Similarity=0.297 Sum_probs=403.9
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001415 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1082)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 81 (1082)
+.|++|++.|+|+.+||.+|+.+||.|+|+.+. .+.|.+.++.|+|+.++..+..+...+ +.....+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999998885444 3334459999999999
Q ss_pred HHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhcc-ccccchhhhccCCCchHHHHHHHHHHHhhcccCCCcccc
Q 001415 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL-ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK 160 (1082)
Q Consensus 82 lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1082)
||++..+...+|+..||+.+.++. ++.+++++|..-|.. .++..++... .......|.+|+++|+++|+|++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999998885 588999988875544 4444444432 123677899999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001415 161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240 (1082)
Q Consensus 161 ~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1082)
+|++||++||+||++||+++|+||| ..+..+||.||+|++ ..+|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip--------------- 213 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP--------------- 213 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence 9999999999999999999999999 677799999999998 2222
Q ss_pred CCCCCCCCCccccccCCCCcccCCcccCccCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCcccccccc
Q 001415 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLP 320 (1082)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~ 320 (1082)
T Consensus 214 -------------------------------------------------------------------------------- 213 (519)
T KOG0293|consen 214 -------------------------------------------------------------------------------- 213 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeecee
Q 001415 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 400 (1082)
Q Consensus 321 ~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~ 400 (1082)
.. ....+..|+++||.+.||++|+| ||+++.|.+..||++.....+..
T Consensus 214 ---------~q------------------t~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl---- 261 (519)
T KOG0293|consen 214 ---------SQ------------------TWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL---- 261 (519)
T ss_pred ---------ch------------------hhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee----
Confidence 00 00023459999999999999996 99999999999999866544221
Q ss_pred eeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCce
Q 001415 401 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480 (1082)
Q Consensus 401 ~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~ 480 (1082)
.+.+.+|..+|..+.||||.+||++|+.+..+.+||+.+|...... -.+|...+.+++|.|||.
T Consensus 262 ------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~-- 325 (519)
T KOG0293|consen 262 ------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF-- 325 (519)
T ss_pred ------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--
Confidence 1148899999999999999999999999999999999999876532 124568999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEeecCC-cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEE
Q 001415 481 CVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1082)
Q Consensus 481 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1082)
.+++|+.|+++..||+ +|..+...++-. ..|.++++.+ ||.++++.+.|..|++++..+..... +.....++++.
T Consensus 326 ~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~ 401 (519)
T KOG0293|consen 326 RFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSF 401 (519)
T ss_pred eeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEE
Confidence 6999999999999995 455566665533 4588888754 55889999999999999987654443 23344566677
Q ss_pred EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001415 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1082)
Q Consensus 560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 638 (1082)
++|.|++ ++++.-.+..+++||++..+.+..+.+|.....+..-+|.- +..++++|+.
T Consensus 402 ~iS~d~k---------------------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 402 SISKDGK---------------------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred EEcCCCc---------------------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 7666665 77777789999999999998998888887665666667765 5689999999
Q ss_pred CCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecc
Q 001415 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE 701 (1082)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 701 (1082)
|+.|+||+..++ .++..+.+|...+. +++++ ..+...+|+++.||+|+||....
T Consensus 461 D~kvyIWhr~sg-kll~~LsGHs~~vN--cVswN------P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 461 DSKVYIWHRISG-KLLAVLSGHSKTVN--CVSWN------PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CceEEEEEccCC-ceeEeecCCcceee--EEecC------CCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999 88999999997776 77772 33556789999999999998764
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-56 Score=475.08 Aligned_cols=574 Identities=15% Similarity=0.232 Sum_probs=475.4
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEcccccee-eeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCC
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 442 (1082)
++||++|+. |++.. ...|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999994 77765 346888899998873 21 1334567899999999999999999999
Q ss_pred eEEEEEccCCceeeEEEEeec-cccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecC
Q 001415 443 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1082)
Q Consensus 443 ~v~iwd~~~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1082)
.+++|++.+++.++ .+.. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 6776 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEecCCCcEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEE
Q 001415 522 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1082)
Q Consensus 522 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 600 (1082)
+...|++|..|+++++||+.+... ...+..|...|+++++++|+. .+++++.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 878899999999999999996555 667788888888888888876 7999999999999
Q ss_pred EECCCcceEEEEecCCCCCCcCeEEEcCC-----CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415 601 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD 675 (1082)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~i~~~~~s~d-----g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1082)
||+.+.+....+..... +.++.+-++ |.++++++.+|.+++||..++....+.-....... .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~---------~~ 286 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI---------DH 286 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh---------hc
Confidence 99988887777765544 566777776 67999999999999999988843333222211111 11
Q ss_pred ccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc-cCCceeeecccCCeEEEeeccccccC
Q 001415 676 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERN 754 (1082)
Q Consensus 676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~ 754 (1082)
....+....++....|.++.++|.++......+.. ..+.|.++.|- |+.+.++++++.+.+++|+......
T Consensus 287 ~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG-------~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c- 358 (775)
T KOG0319|consen 287 LLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVG-------YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC- 358 (775)
T ss_pred ceeccccCceEEEEccceEEEEEccccEEehhhcC-------CchhheeeeecCCccceEEEEeCCCceEEEecCCCce-
Confidence 12234455666777788999998876554444332 56788888875 5678899999999999996653221
Q ss_pred CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCC----eeEEEECCCCCC
Q 001415 755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----KTMATFMPPPPA 829 (1082)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~----~~~~~~~~~~~~ 829 (1082)
. .+. +|...|.++....+|-+|++|+ |.++++|.++++ -++....+|.+.
T Consensus 359 ---------------------~--ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 359 ---------------------Q--IIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred ---------------------E--EEe--CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 1 122 3999999999778889999998 799999987433 345667899999
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEeccccee---------eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415 830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 900 (1082)
Q Consensus 830 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~---------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 900 (1082)
|.+++++.....++++++.|+++++|++...+. ......|...|+|++++|+.+++||||.|.+.+||+++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 999999986778999999999999999976221 12335799999999999999999999999999999999
Q ss_pred CcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415 901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 979 (1082)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 979 (1082)
. ........||. .++.++.|+|..+.+++ +.|++|+||.+.++.|+.++. ||...|..+.|-.+|+.|+
T Consensus 494 ~-----~~l~~vLsGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e--GH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 494 Q-----LRLLGVLSGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE--GHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred C-----ceEEEEeeCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeeec--CccceeEeeeeeeCCcEEE
Confidence 5 45778888998 78999999999999999 689999999999999999998 9999999999999999999
Q ss_pred EeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 980 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 980 t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+++.||.+++|++.++++++.+. .| .+.++ +++-++ +..++++|+.||.|.+|.=.|.+
T Consensus 564 S~~adGliKlWnikt~eC~~tlD-------~H-~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNECEMTLD-------AH-NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred eccCCCcEEEEeccchhhhhhhh-------hc-cceeE--EEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence 99999999999999999999988 66 44477 555566 46799999999999999876655
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-55 Score=464.35 Aligned_cols=547 Identities=13% Similarity=0.189 Sum_probs=452.2
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccC-CCCceeEEEEecCCCeE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 435 (1082)
..+.+++++.+||+++ |++++....+++|++.+|+.+.. .+. |+++|.-++|+|.|..|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 5689999999999995 88999999999999999987764 444 99999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-eeEEeecCCcCeEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS 514 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~ 514 (1082)
|+|+.|+.|+|||+..+.+.. .|.||.+.|.++.|.|+-.+.+|++|+.|+++++||+.++. ++.++..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998776 79999999999999999876679999999999999999655 48888999999999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1082)
+.|.++ +..+++++.|..+.+||+...+.....+. ...+.++.+-+++. ...+.+++++|.
T Consensus 198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhc----------------CCcceEEEEecC
Confidence 999766 47899999999999999966554444332 22344454444411 111458999999
Q ss_pred CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG 674 (1082)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1082)
+|.+++||.+++++........ ...+..+...+....++..+.+..+.++|..+. ++.+.+-+....+. .+.|
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--Dm~~--- 331 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--DMKF--- 331 (775)
T ss_pred CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--eeee---
Confidence 9999999999998877665443 223666666665566667778899999998887 67777777766665 3333
Q ss_pred CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccC
Q 001415 675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 754 (1082)
Q Consensus 675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 754 (1082)
..|+.+.+++++....++++++.+.... -++ +|...|.++....+|..+++++.|.++++|.++.....
T Consensus 332 ---lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 332 ---LGPEESHLAVATNSPELRLYTLPTSYCQ------IIP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred ---cCCccceEEEEeCCCceEEEecCCCceE------EEe--CchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 2677899999999999999987764332 233 49999999998888889999999999999977321100
Q ss_pred CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC-eEEEee-CCeEEEEecCCCee---------EEEE
Q 001415 755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT---------MATF 823 (1082)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~l~~~s-dg~i~iwd~~~~~~---------~~~~ 823 (1082)
..++ ....+|.+.|.+++++..+- ++++++ |.++++|++...+. ..+.
T Consensus 401 ------------------~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 401 ------------------SLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred ------------------hhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 0011 11235999999999987654 677776 79999999975221 1133
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc
Q 001415 824 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 903 (1082)
Q Consensus 824 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 903 (1082)
..|...|++++++| +..++|+|+.|.+.+||++.......+|.||+..|+++.|+|..+.++|+|.|++|+||.+.+
T Consensus 460 ~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-- 536 (775)
T KOG0319|consen 460 RAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-- 536 (775)
T ss_pred HhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc--
Confidence 46889999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEee
Q 001415 904 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 982 (1082)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s 982 (1082)
..++..++||. ..|..+.|-.+|+.|++ +.||-+++|+++++.|+..+. +|.+.|++++-+|++.+++||+
T Consensus 537 ---fSClkT~eGH~---~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 537 ---FSCLKTFEGHT---SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred ---ceeeeeecCcc---ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecC
Confidence 55788999998 78999999999999999 799999999999999999987 8999999999999999999999
Q ss_pred cCCcEEEEecCCc
Q 001415 983 LDATVCVFSAANL 995 (1082)
Q Consensus 983 ~dg~v~vwd~~~~ 995 (1082)
.||.|.+|.-.+.
T Consensus 609 ~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 609 GDGRIIFWKDVTE 621 (775)
T ss_pred CCeEEEEeecCcH
Confidence 9999999965543
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-50 Score=429.99 Aligned_cols=571 Identities=18% Similarity=0.298 Sum_probs=445.0
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
..+.+...|++++.||+|. +|++....|...+-+......+++..| ..+|.|+.|||||
T Consensus 50 l~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng 108 (893)
T KOG0291|consen 50 LPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG 108 (893)
T ss_pred EEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence 3445889999999999999 577778889999999988887775433 4589999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCce-----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce--eEEe
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF 505 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~-----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~--~~~~ 505 (1082)
+++|+|. .+.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.+
T Consensus 109 ~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l 185 (893)
T KOG0291|consen 109 KFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL 185 (893)
T ss_pred cEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence 9999985 46799998765432 233446789999999999999999 899999999999999987665 5778
Q ss_pred ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec-----C---------CCCceEEEEEccCCCeeeec
Q 001415 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----A---------PGRWCTTMAYSADGTRTYQG 571 (1082)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---------~~~~v~~~~~s~d~~~~~~~ 571 (1082)
.+|.+.|.++-|..+ ...+++.+.||.+.+|..........-. + ....+....|..- ++.+..
T Consensus 186 ~gHkd~VvacfF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~-~k~~ln 262 (893)
T KOG0291|consen 186 NGHKDYVVACFFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT-KKHYLN 262 (893)
T ss_pred cCCCcceEEEEeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE-Eeeeec
Confidence 899999988777543 3679999999999999876321111000 0 0001111111110 112222
Q ss_pred ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcEEEEEecCC
Q 001415 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG 650 (1082)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~iwd~~~~ 650 (1082)
.....+.+.+|++.-+.++++-..|...+|++....++..+....+ .|..++|+..|.+|+.|+.. |.+-||+..+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 2335788999999999999999999999999999999999986655 79999999999999998764 78888887654
Q ss_pred ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415 651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 730 (1082)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 730 (1082)
..+ +..++|...+.+++++||
T Consensus 341 -sYV----------------------------------------------------------lKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 341 -SYV----------------------------------------------------------LKQQGHSDRITSLAYSPD 361 (893)
T ss_pred -cee----------------------------------------------------------eeccccccceeeEEECCC
Confidence 111 112338888999999999
Q ss_pred CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeE
Q 001415 731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 809 (1082)
Q Consensus 731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i 809 (1082)
|+.+++++.||.|++||. .+|.+.... .+|...|+.+.|+..|+.+++.+ ||+|
T Consensus 362 gq~iaTG~eDgKVKvWn~----------------------~SgfC~vTF---teHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNT----------------------QSGFCFVTF---TEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred CcEEEeccCCCcEEEEec----------------------cCceEEEEe---ccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 999999999999998854 455555432 23999999999999999999998 9999
Q ss_pred EEEecCCCeeEEEECCCCC-CeeEEEEecCCCcEEEEEeCCC-cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEE
Q 001415 810 SLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 887 (1082)
Q Consensus 810 ~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s 887 (1082)
+.||+...+..+++..+.. ...|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|++..|||
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 9999999999999986543 568899999 888999998886 8999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccC------
Q 001415 888 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR------ 960 (1082)
Q Consensus 888 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------ 960 (1082)
+|.|.+|++||+-.... ..+.++.. ..+..++|+|||+.|++ ..||+|.+||...+..+..+...
T Consensus 496 ~SWDkTVRiW~if~s~~-~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g 567 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSG-TVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG 567 (893)
T ss_pred ccccceEEEEEeeccCc-eeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc
Confidence 99999999999977421 11222222 45789999999999999 68999999999876665333211
Q ss_pred ------------CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCe-----------------------
Q 001415 961 ------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA----------------------- 1005 (1082)
Q Consensus 961 ------------~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~----------------------- 1005 (1082)
......+.+++|+||.+|++|+..+.|++|++.++.+++++....
T Consensus 568 R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~ 647 (893)
T KOG0291|consen 568 RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMD 647 (893)
T ss_pred ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcc
Confidence 124678999999999999999999999999999998877665211
Q ss_pred ---------------ecCC--------CCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415 1006 ---------------YLPA--------GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1006 ---------------~~~~--------gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
.+|. .+....|.+.++.|+|. |+-+|.++..|- .+|.+.+
T Consensus 648 LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsld~ 710 (893)
T KOG0291|consen 648 LIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSLDT 710 (893)
T ss_pred ccccccccccccccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEecCC
Confidence 0000 01122467889999995 788888887774 4555544
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5e-50 Score=408.97 Aligned_cols=574 Identities=15% Similarity=0.151 Sum_probs=433.8
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1082)
+.-.|.|..++.+. ...|.+-+++...... ++.+|..+++-..|||.|.|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 44567777666653 4567777777665543 48899999999999999999999999999
Q ss_pred EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEE-eCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCC
Q 001415 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 522 (1082)
Q Consensus 444 v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 522 (1082)
|||||....+.+. ..+++.-.++|..++|+.|+++ ++|+| +.++..+++-.++|..+..+.||...|.++.|-|...
T Consensus 83 vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 83 VRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEEEeccCcceee-eeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc
Confidence 9999998754432 2267778899999999999996 34444 3444555666678999999999999999999987765
Q ss_pred ceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEE
Q 001415 523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 602 (1082)
Q Consensus 523 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 602 (1082)
-.+++|+.|++|.+|+-...+....+..|...|.++.|+|||. +|++++.||.+.+||
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~---------------------~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS---------------------RFATAGSDGKIYIYD 218 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC---------------------eEEEecCCccEEEEc
Confidence 6899999999999996555444455556666666666666655 899999999999999
Q ss_pred CCCcceEEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCC
Q 001415 603 MDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLAD 681 (1082)
Q Consensus 603 ~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 681 (1082)
-.+|+.+..+. ...+...|.+++|+||++.+++++.|.+++|||+.+. .+.+++.-... +....+. ..-.
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~-v~dqqvG-------~lWq 289 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGST-VEDQQVG-------CLWQ 289 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCc-hhceEEE-------EEEe
Confidence 99999999987 3344558999999999999999999999999999988 55555543222 1000111 1223
Q ss_pred CCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccc
Q 001415 682 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 761 (1082)
Q Consensus 682 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 761 (1082)
...|++.+.+|++..++.........+ .+|...|+++..++++++|++++.||.|.-|+......
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-------- 354 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-------- 354 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--------
Confidence 778899999999999998876522222 34999999999999999999999999999997653321
Q ss_pred ccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEE--ECCCCCCeeEEEEecCC
Q 001415 762 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQD 839 (1082)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~ 839 (1082)
- .+.+..|...|.+++.+..+.++.++-|+++++.++........ .+ ......+++..+ +
T Consensus 355 --------------~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d 416 (603)
T KOG0318|consen 355 --------------D--RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-D 416 (603)
T ss_pred --------------c--ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-C
Confidence 1 12234599999999999988888888899999998864433222 12 222344888888 6
Q ss_pred CcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCC
Q 001415 840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 919 (1082)
Q Consensus 840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 919 (1082)
+.+++..+.++.+.+=|...- ..+. -.-...+++++|++..++.|+.|+.|+||.+...+......... |.
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~---~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~-- 487 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKV---SSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR-- 487 (603)
T ss_pred CCEEEEEecCcEEEEecCCcc---eeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc--
Confidence 666666666655444433321 1221 22346789999999999999999999999999866433222222 22
Q ss_pred CCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415 920 AQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 998 (1082)
Q Consensus 920 ~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~ 998 (1082)
+.+++++||||+.+||++ ..+.+.+||+.+.+..... -.-|...|.+++|||+.+++|||+-|..|.||++......
T Consensus 488 -a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 488 -AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred -CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 678999999999999996 5688999999888773322 2248999999999999999999999999999999887666
Q ss_pred eeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccC
Q 001415 999 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus 999 ~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~ 1046 (1082)
..+. ..|... ++ .+.|.. ...+++.+.|.+|++|.+.
T Consensus 566 i~ik------nAH~~g-Vn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIK------NAHLGG-VN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEec------cccccC-ce--eEEEec--CceEEeccCcceeEEeccc
Confidence 4433 233333 44 788884 6899999999999999874
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-53 Score=415.81 Aligned_cols=376 Identities=20% Similarity=0.342 Sum_probs=298.1
Q ss_pred cCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCC
Q 001415 340 AFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419 (1082)
Q Consensus 340 ~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 419 (1082)
+.+......++-..+-+|.++|-|++|||+|++ ||+|+.|.++++||..+...+.+ .++|
T Consensus 97 avfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH 156 (480)
T KOG0271|consen 97 AVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGH 156 (480)
T ss_pred hhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCC
Confidence 344555666777777789999999999999996 99999999999999999887764 8999
Q ss_pred CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC-----CCCceEEEEEeCCCcEEEE
Q 001415 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~-----dg~~~~l~s~s~d~~i~vw 494 (1082)
...|.|++|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+||
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIW 232 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIW 232 (480)
T ss_pred ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEE
Confidence 99999999999999999999999999999999987765 6889999999999965 455 79999999999999
Q ss_pred EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|+..+.++..+.||+.+|+|++|-.. .+|++|+.|++|++|+...+.....+.+|.++|..++.+.|--
T Consensus 233 d~~~~~~~~~lsgHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-------- 301 (480)
T KOG0271|consen 233 DTKLGTCVRTLSGHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-------- 301 (480)
T ss_pred EccCceEEEEeccCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh--------
Confidence 99999999999999999999998432 4999999999999999988888888888988888888765531
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~ 653 (1082)
|-+|..|.+ +............ -.-.....-..+..|++|++|.++.+|+.....+
T Consensus 302 --------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk- 358 (480)
T KOG0271|consen 302 --------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK- 358 (480)
T ss_pred --------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-
Confidence 111111100 0000000000000 0000000011123344444444444443211100
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 733 (1082)
+|
T Consensus 359 -------------------------------------------------------------------pi----------- 360 (480)
T KOG0271|consen 359 -------------------------------------------------------------------PI----------- 360 (480)
T ss_pred -------------------------------------------------------------------ch-----------
Confidence 00
Q ss_pred eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEE
Q 001415 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 812 (1082)
Q Consensus 734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iw 812 (1082)
. +..+|..-|..+.||||++++|+++ |..|++|
T Consensus 361 -------------------------------------------~---rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 361 -------------------------------------------T---RMTGHQALVNHVSFSPDGRYIASASFDKSVKLW 394 (480)
T ss_pred -------------------------------------------h---hhhchhhheeeEEECCCccEEEEeecccceeee
Confidence 0 0113888899999999999999998 8999999
Q ss_pred ecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCC
Q 001415 813 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 892 (1082)
Q Consensus 813 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 892 (1082)
|..+|+.+.+|++|-+.|..++|+. |.++|++|+.|.++++|++++.++...|.||.+.|.++.|+|||..+++|+.|.
T Consensus 395 ~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred eCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEE
Q 001415 893 QLCVWS 898 (1082)
Q Consensus 893 ~i~vwd 898 (1082)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999994
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-49 Score=401.46 Aligned_cols=540 Identities=17% Similarity=0.214 Sum_probs=429.1
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
+....+|..+++-..|||.|-| +|+|...|.|+|||....+.+...+|+ .-.++|..|+|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 4456679999999999999995 999999999999999875555443333 3466999999999
Q ss_pred CCCeEEEEeCC----CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415 431 DGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1082)
Q Consensus 431 dg~~las~~~d----~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 506 (1082)
|+++|++.++. |.+.+|| +|..+. ++.||...|.+++|-|.... .++||++|++|.+|+=.--+...++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999887653 3455555 555455 78999999999999998876 89999999999999855556667788
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec---CCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~ 583 (1082)
.|...|.++.|+|+ |.++++.+.||.+.+||-.+++....+. .|.+.|.+++|+||++
T Consensus 188 ~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~----------------- 248 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST----------------- 248 (603)
T ss_pred ccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----------------
Confidence 89999999998765 5899999999999999999998888777 6666777777776665
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc
Q 001415 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1082)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1082)
++++++.|.+++|||+.+.+++.++...... .....+.|. +..|++.+.+|.|.+++...+. ..+.+.+|..
T Consensus 249 ----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK 321 (603)
T KOG0318|consen 249 ----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNK 321 (603)
T ss_pred ----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheeccccc
Confidence 8999999999999999999999988755431 122344454 6688999999999999999985 8899999998
Q ss_pred cccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCe
Q 001415 663 DASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 742 (1082)
Q Consensus 663 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 742 (1082)
.+. ++.. +++++++++++.||.|.-|+...+... ++.+..|...|.+++-+..+. +++.+.|.+
T Consensus 322 ~IT--aLtv-------~~d~~~i~SgsyDG~I~~W~~~~g~~~------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~ 385 (603)
T KOG0318|consen 322 SIT--ALTV-------SPDGKTIYSGSYDGHINSWDSGSGTSD------RLAGKGHTNQIKGMAASESGE-LFTIGWDDT 385 (603)
T ss_pred cee--EEEE-------cCCCCEEEeeccCceEEEEecCCcccc------ccccccccceEEEEeecCCCc-EEEEecCCe
Confidence 887 5666 899999999999999999999865433 233345999999999887665 888899999
Q ss_pred EEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEE
Q 001415 743 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT 822 (1082)
Q Consensus 743 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~ 822 (1082)
+++.++......... ... -.....+++..+++.+++.+.++.|.+..-.+ .+..
T Consensus 386 l~~~~~~~~~~t~~~-----------------~~~-------lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~ 439 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSE-----------------VVK-------LGSQPKGLAVLSDGGTAVVACISDIVLLQDQT--KVSS 439 (603)
T ss_pred EEEEecccCcccccc-----------------eee-------cCCCceeEEEcCCCCEEEEEecCcEEEEecCC--ccee
Confidence 998876543321111 000 23334489999999888888877777765322 2222
Q ss_pred ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee--eeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415 823 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 900 (1082)
Q Consensus 823 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 900 (1082)
.. ..-...+++++| ++..+|+|++||.|+||.+..+++. ..+..|.++|++++||||+.+||+++..+.+.+||+.
T Consensus 440 ~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 440 IP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred ec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 22 344678999999 9999999999999999999876533 4567899999999999999999999999999999999
Q ss_pred CcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415 901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 979 (1082)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 979 (1082)
+.+... ....-|. ..|.+++|+|+.+++|+ +-|..|.||+++..... .....+|...|+.+.|-. ...|+
T Consensus 518 s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~-i~iknAH~~gVn~v~wld-e~tvv 588 (603)
T KOG0318|consen 518 SREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLD-ESTVV 588 (603)
T ss_pred cCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhh-eEeccccccCceeEEEec-CceEE
Confidence 976522 2222233 67899999999999999 68999999999876655 333347888899999974 56788
Q ss_pred EeecCCcEEEEecC
Q 001415 980 ACFLDATVCVFSAA 993 (1082)
Q Consensus 980 t~s~dg~v~vwd~~ 993 (1082)
+.+.|..|++|++.
T Consensus 589 SsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 589 SSGQDANIKVWNVT 602 (603)
T ss_pred eccCcceeEEeccc
Confidence 89999999999874
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-49 Score=421.54 Aligned_cols=580 Identities=15% Similarity=0.220 Sum_probs=448.7
Q ss_pred cCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEE
Q 001415 368 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447 (1082)
Q Consensus 368 pdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iw 447 (1082)
..|++ ++++....|.+||+.+|+..... +.......|+|++-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 45774 33445678999999999554321 122344699999999999999999999999999
Q ss_pred EccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEE
Q 001415 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 527 (1082)
Q Consensus 448 d~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 527 (1082)
+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|... ..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~--~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNG--DSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCC--CeEEE
Confidence 999886554 8999999999999999999 7999999999999999998889999999999998877642 37999
Q ss_pred EecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-
Q 001415 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV- 606 (1082)
Q Consensus 528 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~- 606 (1082)
+.+.|+.|++||+++..+..+.-.|...+..+++.+ +.+++++.|+.+++|++...
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCceEEEEeeccc
Confidence 999999999999999888877777777777777665 26899999999999998211
Q ss_pred -----------ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccc-------ccc------
Q 001415 607 -----------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN-------LAY------ 662 (1082)
Q Consensus 607 -----------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~------ 662 (1082)
+...++...+. .....++..++++++++-+.|..+.++.+.+..+..+.+.. +..
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk-~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSK-GREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred ccccccccceeeccceeeeccC-CceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 11112221111 23445777788999999999999999988765332222211 000
Q ss_pred cc-------------cccccccCCCCccccCCCCceeeeccCCceeEEEecccCCC--CccccccccCcccccceeEEEE
Q 001415 663 DA-------------SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEP--NQCRSLRLPENLRATKISRLIF 727 (1082)
Q Consensus 663 ~~-------------~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~ 727 (1082)
.+ .+....+...+...++.....++.-.++++..+.++..... ...+.-.+...+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 00 00011111122222333332333366788888888762211 1112222223459999999999
Q ss_pred ccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-
Q 001415 728 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG- 806 (1082)
Q Consensus 728 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd- 806 (1082)
+.+...+++++ ++.+.+|+. .+.+++... ....+.+..|-|.++++++|.+
T Consensus 382 S~d~~~~~Sga-~~SikiWn~----------------------~t~kciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~ 433 (888)
T KOG0306|consen 382 SSDSILLASGA-GESIKIWNR----------------------DTLKCIRTI-----TCGYILASKFVPGDRYIVLGTKN 433 (888)
T ss_pred ecCceeeeecC-CCcEEEEEc----------------------cCcceeEEe-----ccccEEEEEecCCCceEEEeccC
Confidence 99987555554 456777754 444444432 3447888999999999999985
Q ss_pred CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc-----ceeeeeec-------ccccCEE
Q 001415 807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKSKLK-------GHSKRIT 874 (1082)
Q Consensus 807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~V~ 874 (1082)
|.+.+||+.+...+.+.+.|.+.+..++.+| |+..+++|+.|.+|++||..- |.....+. .-...|.
T Consensus 434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 9999999999999999999999999999999 899999999999999999752 21111121 1346799
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcce
Q 001415 875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC 953 (1082)
Q Consensus 875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~ 953 (1082)
|+.+||||++||.+=-|.+|+||-+++ .++.-...||. .+|.++..|||++.+++ +.|+.|++|-++-|.|
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 999999999999999999999999999 55677888998 68999999999999999 6899999999999999
Q ss_pred eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415 954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus 954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
.+.+. +|.+.|.++.|-|+..++.+++.|+.|+-||....+.+..+. ||... ++ +++-+| +|.++++
T Consensus 585 HKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~e-v~--cLav~~-~G~~vvs 651 (888)
T KOG0306|consen 585 HKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSE-VW--CLAVSP-NGSFVVS 651 (888)
T ss_pred hhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchhe-ee--eeEEcC-CCCeEEe
Confidence 99988 899999999999999999999999999999999999999888 66444 66 677778 5899999
Q ss_pred EecCCcEEEEccCC
Q 001415 1034 GLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1034 ~~~dg~v~vW~~~~ 1047 (1082)
++.|..|++|+-..
T Consensus 652 ~shD~sIRlwE~td 665 (888)
T KOG0306|consen 652 SSHDKSIRLWERTD 665 (888)
T ss_pred ccCCceeEeeeccC
Confidence 99999999999766
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-49 Score=415.59 Aligned_cols=550 Identities=13% Similarity=0.183 Sum_probs=425.7
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
....+|+|+.-+||.- +||+|..||.|+||+..++..+.+ +.||..+|+++.|+..|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3447899999999987 699999999999999988766553 88999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 515 (1082)
|+|+.|+.|.+||+-...... .+.||.+.|+..-|..+.+ ++++.|.|+.|++||+++..|..+.-.|.+.++++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998766554 7999999999999998777 89999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
++.+ ..+++++.|+.+++|++...... ....+.+++..-|. +.....+...-+..++++.++++-+.|
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~------~~~~~~~s~~~~G~--~~rqsk~R~i~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDE------KETNRYISTKLRGT--FIRQSKGREINLVTDFSDRFLVCQGAD 265 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeeccccc------ccccccceeeccce--eeeccCCceeEEeecCcccEEEEecch
Confidence 9865 47999999999999998321111 00112223333232 111122234445667777788899999
Q ss_pred CeEEEEECCCcceEEE-------------E-------------------ecCCCCCCcCeEEEcCCCC---EEEEEECCC
Q 001415 596 FSIKFWDMDSVQLLTS-------------I-------------------DADGGLPASPRIRFNKDGC---LLAVSTNDN 640 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~-------------~-------------------~~~~~~~~i~~~~~s~dg~---~l~~~~~dg 640 (1082)
..+.++.+.+.+.+.. . ..-.....+.++.+.|++. .|+. -.++
T Consensus 266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nN 344 (888)
T KOG0306|consen 266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANN 344 (888)
T ss_pred hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecC
Confidence 9999998865321100 0 0000012356777777543 2333 6678
Q ss_pred cEEEEEecCCccc--------eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccc
Q 001415 641 GIKILATSDGIRL--------LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 712 (1082)
Q Consensus 641 ~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 712 (1082)
++.+|.+...... .-.+.+|...+. ++++ +.+...+++ +..+.+++|+..+.+....+
T Consensus 345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR--sl~v-------S~d~~~~~S-ga~~SikiWn~~t~kciRTi---- 410 (888)
T KOG0306|consen 345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR--SLCV-------SSDSILLAS-GAGESIKIWNRDTLKCIRTI---- 410 (888)
T ss_pred ceEEEEeccCCCCCccccccceeeeccchhhee--EEEe-------ecCceeeee-cCCCcEEEEEccCcceeEEe----
Confidence 8888887652111 123345555444 4444 555444444 45589999999875443332
Q ss_pred ccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEE
Q 001415 713 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 792 (1082)
Q Consensus 713 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 792 (1082)
..+.+.+..|.|.+++++.+..+|.+.+||+..... +.. . ..|.+.|.++
T Consensus 411 -----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l----------------------~Et-i--~AHdgaIWsi 460 (888)
T KOG0306|consen 411 -----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL----------------------VET-I--RAHDGAIWSI 460 (888)
T ss_pred -----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh----------------------hhh-h--hccccceeee
Confidence 344788899999999999999999999998764321 111 1 1399999999
Q ss_pred EeecCCCeEEEee-CCeEEEEecCC-----CeeEEEEC-------CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415 793 ALSKNDSYVMSAS-GGKISLFNMMT-----FKTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 859 (1082)
Q Consensus 793 ~~s~dg~~l~~~s-dg~i~iwd~~~-----~~~~~~~~-------~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 859 (1082)
+.+||++.+++|+ |.+|++||..- +...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+.+
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc
Confidence 9999999999998 78999999751 22211111 1356799999999 999999999999999999999
Q ss_pred ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E
Q 001415 860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 938 (1082)
Q Consensus 860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~ 938 (1082)
-+....+.||.-||.||.+|||++.++|||.|.+|++|-++-|.+ .....+|. ..|.++.|-|+...+.+ +
T Consensus 540 lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 540 LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEec
Confidence 999999999999999999999999999999999999999998765 44455565 67899999998888877 7
Q ss_pred ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415 939 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 998 (1082)
Q Consensus 939 ~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~ 998 (1082)
.|+.++-||..+.++++.+. +|...|++++.+|+|.+++++|.|.+|++|......++
T Consensus 612 KD~kvKqWDg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 612 KDGKVKQWDGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred CcceEEeechhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 89999999999999999887 89999999999999999999999999999987764443
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-46 Score=395.19 Aligned_cols=545 Identities=15% Similarity=0.236 Sum_probs=421.2
Q ss_pred eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC
Q 001415 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1082)
Q Consensus 362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1082)
-.+.|++||.. +. ....+.|.++|+...+... ..-.+...|.+++.||+|.+|++...+
T Consensus 18 Gnl~ft~dG~s-vi-SPvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VI-SPVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EE-eccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 45789999985 33 3457889999997755432 134567799999999999999999999
Q ss_pred CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC--------ceeEEeecCCcCeE
Q 001415 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--------AKQYIFEGHEAPVY 513 (1082)
Q Consensus 442 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~ 513 (1082)
|...+-++.....+.. + ....+|.|+.|||||+ ++|.|. .+.+.||..... ...+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 9999998887654432 2 2356899999999999 455544 578999976432 22356789999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCc--eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
++.|+.+. ++|++|+.|-.+++|+++..+. ...+.+|...|...-|..+.. .+++
T Consensus 150 si~Ws~DS--r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~---------------------~l~t 206 (893)
T KOG0291|consen 150 SIDWSDDS--RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL---------------------DLYT 206 (893)
T ss_pred EEEeccCC--ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc---------------------eEEE
Confidence 99997544 7999999999999999987666 345556666666666655544 6889
Q ss_pred EeCCCeEEEEECCCc-----------------------ce---------EEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001415 592 AGDDFSIKFWDMDSV-----------------------QL---------LTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~-----------------------~~---------~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d 639 (1082)
.+.||.+.+|..... +. ....-.......+++.+|++..+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 999999999977511 00 0000011111346677777777777777777
Q ss_pred CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccc
Q 001415 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 719 (1082)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 719 (1082)
|...+|++..- .+++.+ .. ..
T Consensus 287 G~f~LyelP~f-~lih~L---------------------------------------------------Si-------s~ 307 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSL---------------------------------------------------SI-------SD 307 (893)
T ss_pred CeeEEEecCCc-eEEEEe---------------------------------------------------ec-------cc
Confidence 77777765433 222111 10 45
Q ss_pred cceeEEEEccCCceeeecccC-CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 720 TKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
.+|..++|+..|..++.++.. |++.+|+++...+ .++.++|...+.++++||||
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-------------------------VlKQQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-------------------------VLKQQGHSDRITSLAYSPDG 362 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------------------eeeccccccceeeEEECCCC
Confidence 678999999999999998887 9999999875433 12334599999999999999
Q ss_pred CeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccc-cCEEEE
Q 001415 799 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGL 876 (1082)
Q Consensus 799 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l 876 (1082)
+++|+|+ ||+|+|||..++-|..++..|...|+.+.|+. .++.+++.+-||+|+.||+...+..+++.... -...|+
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 9999998 69999999999999999999999999999999 99999999999999999999999988887542 345678
Q ss_pred EEeCCCCEEEEEeCCC-cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCc-ce
Q 001415 877 AFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL-EC 953 (1082)
Q Consensus 877 ~~s~d~~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~-~~ 953 (1082)
+..|.|..+..|+.|. .|.||++++|+ .+....||. ++|.+++|+|+|..|++ +-|++|++||+-.. ..
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHE---gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHE---GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCC---CcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 8888899999999886 49999999954 678888998 78999999999999999 68999999997433 23
Q ss_pred eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCC----------CCCCCceeeEEEE
Q 001415 954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG----------VSSSNVHPLVIAA 1023 (1082)
Q Consensus 954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~g----------h~~~~v~~~~~~~ 1023 (1082)
+.++ .+...++.++|+|||+-||+++-||.|.+||...+..+..|....-+..| ++...-.-+.+.|
T Consensus 514 vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 514 VETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY 590 (893)
T ss_pred eeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence 3333 34678999999999999999999999999999999888666533323222 2233344568999
Q ss_pred eCCCCCeEEEEecCCcEEEEccCCCC--Ccccc
Q 001415 1024 HPQEPNEFALGLSDGGVHVFEPLESE--GKWGV 1054 (1082)
Q Consensus 1024 ~~~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~ 1054 (1082)
++ ||..+++||....|.++++.++. .+|..
T Consensus 591 Sa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 591 SA-DGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred cC-CCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 99 79999999999999999999987 44444
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-50 Score=392.07 Aligned_cols=362 Identities=18% Similarity=0.250 Sum_probs=301.2
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 78999999999999999999999999999999999987665 8999999999999999999 799999999999999
Q ss_pred ccCCcee-EEeecCCcCeEEEeeee---cCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeec
Q 001415 496 ATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1082)
Q Consensus 496 ~~~~~~~-~~~~~h~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~ 571 (1082)
.++|+++ +.+.+|...|++++|.| .++..+|++++.||.++|||+..+.+...+.+|...|+++.|..+|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g------ 259 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG------ 259 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc------
Confidence 9998876 68999999999999975 3556799999999999999999999999999999999999998776
Q ss_pred ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCc
Q 001415 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1082)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~ 651 (1082)
++++++.|++|++|+...|.+...+++|.+ .|+.++++.|- .|-+|..|.+
T Consensus 260 ----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~LRtgaf~~t---------- 310 (480)
T KOG0271|consen 260 ----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-VLRTGAFDHT---------- 310 (480)
T ss_pred ----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-hhhccccccc----------
Confidence 599999999999999999999999998887 78888877542 1111111100
Q ss_pred cceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCC
Q 001415 652 RLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 731 (1082)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 731 (1082)
+...-..+ +.+.-
T Consensus 311 ------------------------------~~~~~~~s-----------------e~~~~-------------------- 323 (480)
T KOG0271|consen 311 ------------------------------GRKPKSFS-----------------EEQKK-------------------- 323 (480)
T ss_pred ------------------------------cccCCChH-----------------HHHHH--------------------
Confidence 00000000 00000
Q ss_pred ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEE
Q 001415 732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKIS 810 (1082)
Q Consensus 732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~ 810 (1082)
.+.- +..+.-..+..+++|+| .++.
T Consensus 324 --------------------------------Al~r----------------------Y~~~~~~~~erlVSgsDd~tlf 349 (480)
T KOG0271|consen 324 --------------------------------ALER----------------------YEAVLKDSGERLVSGSDDFTLF 349 (480)
T ss_pred --------------------------------HHHH----------------------HHHhhccCcceeEEecCCceEE
Confidence 0000 00011123457788875 7799
Q ss_pred EEecC-CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415 811 LFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 811 iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 889 (1082)
+|+.. +.+++..+.+|...|+.+.||| |++++|+++.|..|++|+-.+|+.+..|+||-++|+.++||.|.++|++|+
T Consensus 350 lW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 350 LWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS 428 (480)
T ss_pred EecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC
Confidence 99876 4457888999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEE
Q 001415 890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 947 (1082)
Q Consensus 890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd 947 (1082)
.|.++++|++.+. ++.....||. ..|.++.|+|||..+++ +.|+.+++|.
T Consensus 429 kDsTLKvw~V~tk-----Kl~~DLpGh~---DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTK-----KLKQDLPGHA---DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeee-----eecccCCCCC---ceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999994 3455666776 68999999999999999 6899999994
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=373.52 Aligned_cols=605 Identities=15% Similarity=0.185 Sum_probs=399.6
Q ss_pred ceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe-
Q 001415 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY- 439 (1082)
Q Consensus 361 v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 439 (1082)
-..++-+|-.- ++|. -....|.++|++..+..+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34556666555 3443 234678899987655443 4778888999999999999999984
Q ss_pred -CCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC--CCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415 440 -SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1082)
Q Consensus 440 -~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 516 (1082)
....+++|++.....+. ++..|...|+|++|+|.++ |+++.+. |-.|.+||++.......-+ -...|.+++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 55679999999877665 7889999999999999999 7887764 4457889887654443322 346788888
Q ss_pred eeecCCceEEEEecCCCcEEEEecCCCCceee---ecCCC-----------------C---ceEEEEEccCCCe------
Q 001415 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAPG-----------------R---WCTTMAYSADGTR------ 567 (1082)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~-----------------~---~v~~~~~s~d~~~------ 567 (1082)
|+ .+|.++++.+ ...|++|.++....... +.+.. . .-...+++..|..
T Consensus 173 fs--EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR 249 (1080)
T KOG1408|consen 173 FS--EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR 249 (1080)
T ss_pred Ec--cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh
Confidence 75 5557888776 67899999987652210 00000 0 0012233333321
Q ss_pred -eee---cccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEec----------------------CCCCCCc
Q 001415 568 -TYQ---GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPAS 621 (1082)
Q Consensus 568 -~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~i 621 (1082)
++. ..+.....|++.+ .+++++|+.+|.|++|+..+-....++.. .......
T Consensus 250 RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 250 RLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred hhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 100 0111223344444 45899999999999999877554443321 0111223
Q ss_pred CeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc--ccccccccc-cc--ccCCCCccccCCCCceeeeccCCceeE
Q 001415 622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE--NLAYDASRT-SE--NSKNGDVRSLADVKPRITEESNDKSKV 696 (1082)
Q Consensus 622 ~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~~~~~~s~~~~~l~~~~~d~~i~i 696 (1082)
.++.|++....|.+...|..++|||+++-.+.-+... -|..-+... .+ ..........| ...+++++.|++|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp-~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLP-RGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCC-ccceeEecCCCcEEE
Confidence 5788999999999999999999999987643322111 111100000 00 00000000011 112445555555555
Q ss_pred EEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCccee
Q 001415 697 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 776 (1082)
Q Consensus 697 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1082)
|++.........+.. .++.+-..++. .|+... -+.|...+..-
T Consensus 407 W~l~~ctnn~vyrRN--------------ils~~l~ki~y--~d~~~q---------------------~~~d~~~~~fd 449 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRN--------------ILSANLSKIPY--EDSTQQ---------------------IMHDASAGIFD 449 (1080)
T ss_pred eecccccccceeecc--------------cchhhhhcCcc--ccCchh---------------------hhhhccCCccc
Confidence 554432111111000 00000000000 000000 00011111100
Q ss_pred ecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecC--CCcEEEEEeCCCcEE
Q 001415 777 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQ 853 (1082)
Q Consensus 777 ~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~ 853 (1082)
......-.....++++++||+|++||+|. .|.++||++.+.+....+..|..+|.|+.||.. ..++||+++.|.-|.
T Consensus 450 ka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 450 KALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred ccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 00011112567799999999999999998 499999999999999999999999999999853 457999999999999
Q ss_pred EEecccc-eeeeeecccccCEEEEEEeCCC--CEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415 854 IYNVRVD-EVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 930 (1082)
Q Consensus 854 iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 930 (1082)
|||+... .++.++.+|++.|+++.|.-.| ..+++++.|..|.+ +....... .. +-...-+......+..++..|
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~-g~-~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS-GR-LFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccC-ce-eccccccccccceEEEeeeCC
Confidence 9999754 6778999999999999998777 77999999997754 33321110 01 111111122225678999999
Q ss_pred CCcEEEE-EecCeEEEEEccCcceeeeeccC-CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecC
Q 001415 931 DQIHFLV-VHETQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1008 (1082)
Q Consensus 931 dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1008 (1082)
..+++++ +.|+.|+||++.+|+..+.|+.. +|.+....+...|.|-|||+.+.|.++.++|+.+|+++.+..
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~------ 680 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT------ 680 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc------
Confidence 9999999 79999999999999999999843 566788899999999999999999999999999999998877
Q ss_pred CCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1009 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1009 ~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
||+.. ++.+.|.+ |.+.|++.+.||+|+||.++...
T Consensus 681 -GHsE~---VTG~kF~n-DCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 681 -GHSEA---VTGVKFLN-DCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred -Ccchh---eeeeeecc-cchhheeecCCceEEEEECchhH
Confidence 76333 44899999 68999999999999999998743
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-40 Score=332.71 Aligned_cols=357 Identities=19% Similarity=0.339 Sum_probs=281.6
Q ss_pred CCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1082)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1082)
++|....+.+.|+++|.+++|+|-..-++++|+.|-+.++|++......... .-++..+....- .-...+..|++
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lrh~~~~~~--~s~~~nkdVT~ 240 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLRHCIREGG--KSVPSNKDVTS 240 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---hhhhhhhhhhhc--ccCCccCCcce
Confidence 4567777888899999999999988767999999999999998641110000 000000000000 01122458999
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001415 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1082)
Q Consensus 426 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 505 (1082)
++|+.+|..||+|+.||.++||+..... +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|.....+
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEee
Confidence 9999999999999999999999988754 33 6889999999999999999 8999999999999999999998888
Q ss_pred ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1082)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~ 585 (1082)
.-|..+-..+.|-..
T Consensus 315 ~~~s~~~lDVdW~~~----------------------------------------------------------------- 329 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN----------------------------------------------------------------- 329 (524)
T ss_pred eeccCCccceEEecC-----------------------------------------------------------------
Confidence 877766333333211
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1082)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1082)
..|++++.|+.|+|+.+....++.++.+|.+ +|.++.|+|.|.+|++++.|++++||..... .....+.
T Consensus 330 -~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~------- 398 (524)
T KOG0273|consen 330 -DEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQ------- 398 (524)
T ss_pred -ceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhh-------
Confidence 1377777888888888888888888887655 8999999999999999999999999987554 1111111
Q ss_pred ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415 666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 745 (1082)
Q Consensus 666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 745 (1082)
.|...|..+.|+|+|...
T Consensus 399 ---------------------------------------------------~Hskei~t~~wsp~g~v~----------- 416 (524)
T KOG0273|consen 399 ---------------------------------------------------AHSKEIYTIKWSPTGPVT----------- 416 (524)
T ss_pred ---------------------------------------------------hhccceeeEeecCCCCcc-----------
Confidence 177788889999887410
Q ss_pred eeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEEC
Q 001415 746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFM 824 (1082)
Q Consensus 746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~ 824 (1082)
|++ .++..++++ .|++|++||+..+.++.+|.
T Consensus 417 ----------------------~n~-------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 417 ----------------------SNP-------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred ----------------------CCC-------------------------cCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 010 123345555 48999999999999999999
Q ss_pred CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415 825 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 900 (1082)
Q Consensus 825 ~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 900 (1082)
.|..+|.+++|+| +++++|+|+.||.|.+|+.++++.++...+. +.|..++|+.+|..|..+-.|+.+++-|+.
T Consensus 450 kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 450 KHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999 9999999999999999999999999888754 569999999999999999999999998874
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4e-38 Score=339.50 Aligned_cols=589 Identities=15% Similarity=0.151 Sum_probs=435.1
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1082)
..|..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++=..|--|.|++ ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 777777877899999999999999988777752 34677899999865554444433 34
Q ss_pred EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ce----eEEeecCCcCeEEEeee
Q 001415 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH 518 (1082)
Q Consensus 444 v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~----~~~~~~h~~~v~~~~~~ 518 (1082)
|.+|. .++.+.. .+.+|.+.|.-+. +-|. .++++..++.+.||+..++ .. +..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 4544443 5667877777665 3466 6899999999999998874 22 122232233377764 6
Q ss_pred ecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeE
Q 001415 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1082)
Q Consensus 519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 598 (1082)
|+.--+.++.|+.+|.+.+|++++++...++......|+++.-+|-=. .++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEeccCceE
Confidence 665556899999999999999999999999998888888776655432 68889999999
Q ss_pred EEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEecCCccceeecccccccccccccccCCCCcc
Q 001415 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVR 677 (1082)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1082)
.+++++.++.+.+++...+ .|++++|..||..+ ++|+..|.+.+||+...+........|...+. ...|
T Consensus 227 iifNlK~dkil~sFk~d~g--~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~--~~~f------ 296 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDWG--RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVT--GATF------ 296 (910)
T ss_pred EEEEcccCcEEEEEEcccc--ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcc--ccee------
Confidence 9999999999999987633 69999999999765 56666799999999877333333334433332 2333
Q ss_pred ccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc-cCCceeeecccCCeEEEeeccccccCCC
Q 001415 678 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSS 756 (1082)
Q Consensus 678 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 756 (1082)
.+....+++++.|+.+++|-.+.+... .+.++.. .+|..+..++.|. .+|..+++++.|++++.+++.....+.+
T Consensus 297 -l~~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 297 -LPGEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred -cCCCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 677778889999999998887754333 2222221 3589999999998 7889999999999999888765543322
Q ss_pred CCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC----CeEEEe--eCCeEEEEecCCCee-EEEEC-----
Q 001415 757 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----SYVMSA--SGGKISLFNMMTFKT-MATFM----- 824 (1082)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg----~~l~~~--sdg~i~iwd~~~~~~-~~~~~----- 824 (1082)
-.. ......++.....-...-.-.+|..+++...- .-++++ ++..++.|+..+... ...+.
T Consensus 373 l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 373 LGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK 445 (910)
T ss_pred hcc-------cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence 111 01111111111000000023445566654321 123333 356799999987655 23333
Q ss_pred CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee---cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415 825 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 825 ~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
.....+++++.++ .|++.+.|+..|.|.+|++++|-....+ ..|.++|++++...-++.+++++.+|.+++||...
T Consensus 446 ~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 446 KDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred ccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC
Confidence 2346799999999 9999999999999999999999888888 58999999999988899999999999999999998
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEE
Q 001415 902 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 980 (1082)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t 980 (1082)
.... .... ....+..+..+.....+++ ..|-.|.++|..+.+.++.+. +|...|++++|||||++|++
T Consensus 525 k~l~-----~~l~----l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlis 593 (910)
T KOG1539|consen 525 KVLK-----KSLR----LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLIS 593 (910)
T ss_pred ccee-----eeec----cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEE
Confidence 5421 1111 1145788888888888888 677899999999999999998 89999999999999999999
Q ss_pred eecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC-CcEEEEccCCCC
Q 001415 981 CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESE 1049 (1082)
Q Consensus 981 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d-g~v~vW~~~~~~ 1049 (1082)
++.|++|++||+.++.++-.+... ..++++.|+|+ |++||+...| ..|.+|--.+--
T Consensus 594 asmD~tIr~wDlpt~~lID~~~vd-----------~~~~sls~SPn-gD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 594 ASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTSLSFSPN-GDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred eecCCcEEEEeccCcceeeeEecC-----------CcceeeEECCC-CCEEEEEEecCceEEEEEchhHh
Confidence 999999999999999999766511 34568999995 9999999999 789999766544
No 16
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-39 Score=341.97 Aligned_cols=555 Identities=14% Similarity=0.160 Sum_probs=371.3
Q ss_pred CCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
|..+++|++||++|+| +|+|- ....++||++.....+.+ +..|.-.|+|++|||.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 7889999999999996 99886 456699999988765553 7789999999999999999
Q ss_pred EEEEeC--CCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE--------
Q 001415 435 FGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-------- 504 (1082)
Q Consensus 435 las~~~--d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~-------- 504 (1082)
+++.+. |-.|.+||+....... -..-...|..++|+.||. |+++.+ ...|++|.++.++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5578889887543322 122345799999999999 788877 47899999886542110
Q ss_pred -----ee------------------------cC-----------------CcCeEEEeeeecCCceEEEEecCCCcEEEE
Q 001415 505 -----FE------------------------GH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1082)
Q Consensus 505 -----~~------------------------~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1082)
+. || +..-.|++++ ..+|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence 00 11 0111233332 2689999999999999
Q ss_pred ecCCCCceeeecCCCCceEEEEEccCCCeeeecccc---cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEe-c
Q 001415 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK---RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-A 614 (1082)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 614 (1082)
+..+..-.-++.....--..++--..-..+..+... .....+.|++....+.+...|..|+|||++.-..+.... .
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ 365 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM 365 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee
Confidence 887755444333211100000000000111111111 123457788888999999999999999998644322110 0
Q ss_pred CCCCCCcCeEE------------EcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCC
Q 001415 615 DGGLPASPRIR------------FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADV 682 (1082)
Q Consensus 615 ~~~~~~i~~~~------------~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 682 (1082)
--|...|..+. .-|.+ .+++++.|++|++|++..+. --..+........-..+. ..|+
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~~l~ki~--------y~d~ 435 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSANLSKIP--------YEDS 435 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeeccccc-ccceeecccchhhhhcCc--------cccC
Confidence 00111122222 22333 47899999999999987631 111111100000000000 0111
Q ss_pred CceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccc
Q 001415 683 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 762 (1082)
Q Consensus 683 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 762 (1082)
..-+. .|...-++|-... .. -.....+.+++++|+|++|+++...|.+++|++.....
T Consensus 436 ~~q~~--~d~~~~~fdka~~------s~-----~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--------- 493 (1080)
T KOG1408|consen 436 TQQIM--HDASAGIFDKALV------ST-----CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--------- 493 (1080)
T ss_pred chhhh--hhccCCcccccch------hh-----cCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------
Confidence 10000 0001111111100 00 01456789999999999999999999999998864221
Q ss_pred cCccccCCCCcceeecccCCCCCCCCccEEEeec---CCCeEEEee-CCeEEEEecC-CCeeEEEECCCCCCeeEEEEec
Q 001415 763 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHP 837 (1082)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~l~~~s-dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp 837 (1082)
......|...|.|+.||. ..++||+++ |.-|.|||+. +..+++++.+|...|+++.|.-
T Consensus 494 ----------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 494 ----------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred ----------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence 011223999999999984 356899998 5679999997 5677889999999999999987
Q ss_pred CCC-cEEEEEeCCCcEEEEecccceeeeeecc-----cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeee
Q 001415 838 QDN-NIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 911 (1082)
Q Consensus 838 ~~~-~~lasg~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 911 (1082)
.++ ..+++++.|..|.+--.+...-...+.. ....++.++..|..+++++++.|..|+||++.+++. .+
T Consensus 558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k 632 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VK 632 (1080)
T ss_pred cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----ee
Confidence 332 5677888888776543332111112221 235689999999999999999999999999999765 33
Q ss_pred ccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEE
Q 001415 912 IPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 990 (1082)
Q Consensus 912 ~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vw 990 (1082)
.+.+.....+....+...|.|.|+|+ +.|+++.++|..+|+|+.+.. ||+..|+.+.|++|-+.|++.+.||.|.||
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEE
Confidence 33443333366788999999999999 799999999999999998877 999999999999999999999999999999
Q ss_pred ecCCcee
Q 001415 991 SAANLKL 997 (1082)
Q Consensus 991 d~~~~~~ 997 (1082)
.+...+.
T Consensus 711 ~lp~~mi 717 (1080)
T KOG1408|consen 711 KLPLTMI 717 (1080)
T ss_pred ECchhHh
Confidence 9876443
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-41 Score=333.20 Aligned_cols=285 Identities=18% Similarity=0.264 Sum_probs=259.2
Q ss_pred ccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 463 ~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1082)
|.+.+|..+.||.|++ .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..+++|+.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 5677999999999999 89999999999999999999999999999999999999986557899999999999999999
Q ss_pred CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcC
Q 001415 543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1082)
Q Consensus 543 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 622 (1082)
...+..+.+|...|..++|.|+|+ +|++++.|.+-++||+.++..+....+|.. .|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGHs~--~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGHSK--GVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccccc--ccc
Confidence 888888888888887777777766 899999999999999999988877776655 899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415 623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 623 ~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~ 702 (1082)
+++|.+||.++++|+.|..-+|||++++. .+..+
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L--------------------------------------------- 341 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFL--------------------------------------------- 341 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCc-EEEEe---------------------------------------------
Confidence 99999999999999999999999999882 11111
Q ss_pred CCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCC
Q 001415 703 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 782 (1082)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1082)
T Consensus 342 -------------------------------------------------------------------------------- 341 (459)
T KOG0272|consen 342 -------------------------------------------------------------------------------- 341 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce
Q 001415 783 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 861 (1082)
Q Consensus 783 ~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 861 (1082)
.+|..+|.+++|+|+|-.+|+|+ |++++|||++..+.+.++.+|.+.|+.|.|+|+.|.+|++++.|++++||...++.
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence 12777788888889998999987 78999999998889999999999999999999889999999999999999999999
Q ss_pred eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001415 862 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898 (1082)
Q Consensus 862 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 898 (1082)
+++.+.||.+.|.++++++|+.+++|++.|.++++|.
T Consensus 422 ~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999995
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=331.65 Aligned_cols=285 Identities=18% Similarity=0.298 Sum_probs=264.7
Q ss_pred ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC--
Q 001415 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 431 (1082)
Q Consensus 354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 431 (1082)
.++.+.+|..+.||+|++ +||||+-+|.++||++.+...+.+ +.+|+..|.++.|+|.
T Consensus 171 Q~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDS 230 (459)
T ss_pred hccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCC
Confidence 345778999999999999 599999999999999999877764 8999999999999996
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
+..||+|+.||++++|++.+...+. .+.+|...|..++|.|+|+ +|+|++.|.+-++||+.++..+....||...
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccc
Confidence 6799999999999999999987666 7999999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
|.+++|++++ .++++|+.|..-+|||++++.+...+.+|..+|.++.|+|+|. .+++
T Consensus 306 v~~iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lAT 362 (459)
T KOG0272|consen 306 VFSIAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLAT 362 (459)
T ss_pred cceeEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEee
Confidence 9999997654 7999999999999999999999999999999999999988887 8999
Q ss_pred EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccc
Q 001415 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1082)
|+.|++++|||++....+.++..|.. -|+.+.|+| .|.+|++++.|+++++|...+. .+.+.+.+|...+. ++.
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~--s~D 437 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVI--SLD 437 (459)
T ss_pred cCCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCCccceE--EEE
Confidence 99999999999999999998887766 699999999 8899999999999999998888 89999999999887 677
Q ss_pred cCCCCccccCCCCceeeeccCCceeEEE
Q 001415 671 SKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 671 ~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
+ +++++.+++++.|.++++|.
T Consensus 438 i-------s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 I-------SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred e-------ccCCceEEEeccCceeeecc
Confidence 7 99999999999999999995
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=302.55 Aligned_cols=290 Identities=19% Similarity=0.297 Sum_probs=255.4
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
.+.+|...|.++.|++|+++ ++++|.||.+.|||.-|....+- +.-....|..+||+|.|
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPSG 109 (343)
T ss_pred EecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCCC
Confidence 34459999999999999996 99999999999999988777663 34456799999999999
Q ss_pred CeEEEEeCCCeEEEEEccCC--c-eeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC
Q 001415 433 SLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~--~-~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 509 (1082)
+++|.|+-|+...||++.+. + .+....++.+|++.+.|+.|.+|+. |+|+|.|.+..+||+++|+.+..|.||.
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCc
Confidence 99999999999999999865 2 2234447899999999999999876 8999999999999999999999999999
Q ss_pred cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1082)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1082)
+.|.++.+.|. +++.+++|+-|+..++||++.+.....+.+|...|.++.|.|+|. .|
T Consensus 187 gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------af 244 (343)
T KOG0286|consen 187 GDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AF 244 (343)
T ss_pred ccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------ee
Confidence 99999999875 568999999999999999999999999999999888888877776 79
Q ss_pred EEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccc
Q 001415 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1082)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1082)
++|++|++.++||++..+.+..+.......+|++++||..|++|++|..|..+.+||.-.+ +....+.
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~----------- 312 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA----------- 312 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEee-----------
Confidence 9999999999999999999999988777788999999999999999999999999997655 2222221
Q ss_pred ccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415 670 NSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 746 (1082)
Q Consensus 670 ~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 746 (1082)
+|.++|.++..+|||..+++++.|..++||
T Consensus 313 -----------------------------------------------GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 313 -----------------------------------------------GHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred -----------------------------------------------ccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 288889999999999999999999998888
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-38 Score=340.04 Aligned_cols=277 Identities=18% Similarity=0.282 Sum_probs=239.8
Q ss_pred CCCCCCcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeee---eceee---------eccCCCCc
Q 001415 343 TPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKV---------WDLGACSM 409 (1082)
Q Consensus 343 ~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~---~~~~~---------~d~~~~~~ 409 (1082)
....+|..+..++. -...++|+.||+|++ ++|.|-.|..|++|.+...+.... ..+.. -++.....
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 35566777777776 457899999999999 799999999999999985331110 00000 12222233
Q ss_pred ccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415 410 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1082)
Q Consensus 410 ~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~ 489 (1082)
......+.||.++|..+.|+||.++|++++.|++||+|.+.+..++. ...||..+|+++.|+|-|- |+||+|.|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~ 515 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ 515 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence 33444589999999999999999999999999999999999988766 6889999999999999998 899999999
Q ss_pred cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeee
Q 001415 490 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1082)
Q Consensus 490 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~ 569 (1082)
+.++|......+++.+.||.+.|.|+.|+|+. .++++||.|.+||+||+.++..+..+.+|..+|.+++|||+|+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr--- 590 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR--- 590 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc---
Confidence 99999999999999999999999999999876 6999999999999999999999999999999888888888887
Q ss_pred ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
+|++|++||.|.+||+.+++++..+..|.+ .|.++.|+.||..|++|+.|.+|++||+..
T Consensus 591 ------------------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 ------------------YLASGDEDGLIKIWDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ------------------eEeecccCCcEEEEEcCCCcchhhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 899999999999999999999999988844 799999999999999999999999999865
Q ss_pred C
Q 001415 650 G 650 (1082)
Q Consensus 650 ~ 650 (1082)
.
T Consensus 651 ~ 651 (707)
T KOG0263|consen 651 V 651 (707)
T ss_pred h
Confidence 4
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-36 Score=315.36 Aligned_cols=478 Identities=17% Similarity=0.252 Sum_probs=351.2
Q ss_pred cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
..|.+.|.++.|+|...+ +.++-..|.|.|||.++...+... .-..-+|.+..|-+-.++
T Consensus 10 ~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksf-------------------eV~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSF-------------------EVSEVPVRAAKFIARKNW 69 (794)
T ss_pred hccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeee-------------------eecccchhhheeeeccce
Confidence 348999999999999998 566778999999999998888752 233458999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ceeEEeecCCcCeE
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY 513 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~ 513 (1082)
+++|+.|..|+||+..+++.+. .+..|.+-|.+++..|... +++|+|+|-+|++||.+.+ .+.+++.||..-|.
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred EEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 9999999999999999998777 8999999999999999999 8999999999999999865 67789999999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
+++|.|... +.+++++.|++|++|.+....+..++.+|...|.++.+-+.|. ..++++|+
T Consensus 145 qv~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsga 204 (794)
T KOG0276|consen 145 QVAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGA 204 (794)
T ss_pred EEEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecC
Confidence 999998655 7899999999999999999999999999999999998877663 35899999
Q ss_pred CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCC
Q 001415 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN 673 (1082)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1082)
.|.+|+|||..+..|++++.+|.+ .|..+.|+|.-.++++|+.||+++||+..+- ++...+.-....+. +++
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW--~I~--- 276 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYGLERVW--CIA--- 276 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhcCCceEE--EEe---
Confidence 999999999999999999998877 7999999999999999999999999998765 33333322211111 111
Q ss_pred CCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC-CeEEEeeccccc
Q 001415 674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTE 752 (1082)
Q Consensus 674 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~ 752 (1082)
..+.+..+++|..+|.+.+ .+. .....+..++.|+.+.+.... ..+.+-
T Consensus 277 ----~~k~~~~i~vG~Deg~i~v-~lg-------------------reeP~vsMd~~gKIiwa~~~ei~~~~~k------ 326 (794)
T KOG0276|consen 277 ----AHKGDGKIAVGFDEGSVTV-KLG-------------------REEPAVSMDSNGKIIWAVHSEIQAVNLK------ 326 (794)
T ss_pred ----ecCCCCeEEEeccCCcEEE-Ecc-------------------CCCCceeecCCccEEEEcCceeeeeece------
Confidence 1345555666666555443 221 122335555566544444332 111111
Q ss_pred cCCCCCcccccCccccCCCCcceeecccCCCC-CCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCee
Q 001415 753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSN-PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 831 (1082)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~ 831 (1082)
...... +...|+.+....+..+ -.-....++-||+|+++++++||...||..-. -....-+.-.
T Consensus 327 ------s~~~~~----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala-----~RnK~fG~~~ 391 (794)
T KOG0276|consen 327 ------SVGAQK----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALA-----LRNKAFGSGL 391 (794)
T ss_pred ------eccCcc----cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeee-----hhhcccccce
Confidence 111100 3334443333222211 11223467889999999999999999886321 1122445677
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeee
Q 001415 832 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 911 (1082)
Q Consensus 832 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 911 (1082)
...|++ |....|+-..++.|.++ ++.+....++..-. ...--.|.+|...+ ++.+++||.++++.. +
T Consensus 392 eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lV-----r 458 (794)
T KOG0276|consen 392 EFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELV-----R 458 (794)
T ss_pred eEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEE-----E
Confidence 889999 77788888888999998 56665555542211 11122355555555 555999999996543 2
Q ss_pred ccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415 912 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 949 (1082)
Q Consensus 912 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~ 949 (1082)
... .....+.|+.+|.+++.+.|...+++..+
T Consensus 459 rI~------v~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 459 RIE------VTSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EEe------eccceeEEecCCCEEEEEecCceeEEEec
Confidence 222 12367999999999999888877766553
No 22
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.1e-36 Score=317.48 Aligned_cols=644 Identities=14% Similarity=0.150 Sum_probs=419.2
Q ss_pred ceeeecCCCCCceEEEEecCCC---eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEE
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~---~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1082)
....+-+|..+|+|+.|-|+.+ + +++|+.|+.|++|.++....+... .+.+|. +.++
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~--~~~~ 105 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHC--KECV 105 (764)
T ss_pred eEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcc--eeEE
Confidence 3345556999999999999887 4 889999999999999844433321 244554 4455
Q ss_pred EEecCCCeEEEEeCCCeEEEEEccCCceee-EEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC--ceeE
Q 001415 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQY 503 (1082)
Q Consensus 427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~--~~~~ 503 (1082)
++........+.+.|+++.+||.+..+... ....+.--..--.|+++.++.+..+++.|+.+..|.++.-.++ +.+.
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 555444444444789999999996554211 1111222222345777788666557888888888888875544 4566
Q ss_pred EeecCCcCeEEEeeeecCC-ceEEEEecCCCcEEEEecCCCCcee------eecC-CCCceEE----EEEccCCCeeeec
Q 001415 504 IFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRV------DYEA-PGRWCTT----MAYSADGTRTYQG 571 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~-~~~~v~~----~~~s~d~~~~~~~ 571 (1082)
.+.||.+.|.+++|..... .-+|++++.|..||+|.+.-..... .... ...++.. +.+.-.-..++.|
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 8899999999999976554 5689999999999999875433111 0000 0011111 1111111133445
Q ss_pred ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCc--ceEEEEe--cC-CCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSID--AD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1082)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~--~~-~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd 646 (1082)
|.+ -+.++.|+|.+..|++++.|.++.+|...+. --+.... .. +.........|+|+++.+++-+..|..++|.
T Consensus 266 HeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 266 HED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred ccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 554 7888889999989999999999999987654 2222222 11 1223467899999999999999999999998
Q ss_pred ecCC--ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeE
Q 001415 647 TSDG--IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 724 (1082)
Q Consensus 647 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 724 (1082)
..+. ......+.+|...+. .+.| .|.|+++++.+.|.+-++|-.-..+.. -..+.-| +.|...+++
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~--dv~W-------~psGeflLsvs~DQTTRlFa~wg~q~~--wHEiaRP-QiHGyDl~c 412 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVK--DVDW-------DPSGEFLLSVSLDQTTRLFARWGRQQE--WHEIARP-QIHGYDLTC 412 (764)
T ss_pred ccCccceeeccccccccccce--eeee-------cCCCCEEEEeccccceeeecccccccc--eeeeccc-cccccccee
Confidence 3332 234455677777666 5666 999999999999999999876521111 1111111 238888999
Q ss_pred EEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcc-eeecccCCCCCCCCccEEEeecCCCeE-E
Q 001415 725 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDSYV-M 802 (1082)
Q Consensus 725 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~dg~~l-~ 802 (1082)
++|-+....+++++....+++|+....-... ...-.+. ..... .......|..+-.|...-+. .
T Consensus 413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~------------l~~i~g~~~~~~~--~~p~gA~VpaLGLSnKa~~~~e 478 (764)
T KOG1063|consen 413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKS------------LMAICGKCFKGSD--ELPDGANVPALGLSNKAFFPGE 478 (764)
T ss_pred eehccCCceeeecccceeeeeecCcHHHHHH------------HHHHhCccccCch--hcccccccccccccCCCCcccc
Confidence 9999876678898899999999865421000 0000000 00000 00011112222222111110 0
Q ss_pred EeeCCe-------------EEEEecC---------CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEE
Q 001415 803 SASGGK-------------ISLFNMM---------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIY 855 (1082)
Q Consensus 803 ~~sdg~-------------i~iwd~~---------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-----g~v~iw 855 (1082)
+-+.+. ..+.... ....+..+.+|..+|.+++.+| +++++|+++.. ..|++|
T Consensus 479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEE
Confidence 000000 0000000 0123355778999999999999 99999999864 479999
Q ss_pred ecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEE
Q 001415 856 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 935 (1082)
Q Consensus 856 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 935 (1082)
+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.+|..........+ ....+.|. .-|-++.|+||++++
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYF 633 (764)
T ss_pred eccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCccccee
Confidence 99999988999999999999999999999999999999999998665443333 22244444 457889999999999
Q ss_pred EE-EecCeEEEEEccCc--ceeeeeccCCCCcceeEEEEcCC-----CceEEEeecCCcEEEEecCCceeeee---eCCC
Q 001415 936 LV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCD-----SQLVYACFLDATVCVFSAANLKLRCR---INPS 1004 (1082)
Q Consensus 936 ~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~i~~l~~s~d-----g~~l~t~s~dg~v~vwd~~~~~~~~~---~~~~ 1004 (1082)
++ +.|+.|++|..... +.+..+....+...|++++|.|- +..++.|-+.|.|.||....-..... +...
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~ 713 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLD 713 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeec
Confidence 99 68999999999888 77766666678899999999872 33678888999999999652111110 0000
Q ss_pred eecCCCCCCCCceeeEEEEeCCC---------CCeEEEEecCCcEEEEccC
Q 001415 1005 AYLPAGVSSSNVHPLVIAAHPQE---------PNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus 1005 ~~~~~gh~~~~v~~~~~~~~~~d---------~~~l~s~~~dg~v~vW~~~ 1046 (1082)
.-++ .+.++...+..+.|.|.. ...|++|++|.+++++++.
T Consensus 714 ~~l~-~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 714 TRLC-ATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccc-cccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 0000 111222234467888641 2237999999999999864
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2e-35 Score=318.72 Aligned_cols=546 Identities=14% Similarity=0.190 Sum_probs=413.1
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
.+.+.|+|++=..+-- .+++ ...|.+|.- |+.+.. +..+|.+.|.-+. |=|.++
T Consensus 74 ~lp~~I~alas~~~~v---y~A~-g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV---YVAS-GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE---EEec-CcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceE
Confidence 3789999988766543 2322 345666643 333321 3567777777665 468899
Q ss_pred EEEeCCCeEEEEEccCC-ceeeEEEEe-eccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415 436 GVAYSRHIVQIYSYHGG-DEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~-~~~~~~~~~-~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 513 (1082)
.++..++.+.||+..++ .......++ +...+.|+++.- |.-----++.|+.+|.+++|++++++.++++.++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999885 221110122 222233776653 432111378899999999999999999999999999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
++.-+|.- ..++.|..+|+|.+++++..+....+....+.|++++|..||.. .+++++
T Consensus 207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p--------------------~las~~ 264 (910)
T KOG1539|consen 207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP--------------------LLASGR 264 (910)
T ss_pred EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--------------------eEEecc
Confidence 99865554 58999999999999999999999888888889999999988873 577788
Q ss_pred CCCeEEEEECCCcceEEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC---ccceeeccccccccccccc
Q 001415 594 DDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSE 669 (1082)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 669 (1082)
..|.+.+||++..+.+.... .| ...+....|-|....+++++.|+.+++|-..++ .+.++.-.+|..+.. ++
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~--~i 340 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS--CI 340 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch--he
Confidence 88999999999888877665 34 336888999999999999999999998866644 244555667777665 55
Q ss_pred ccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccccc-----------CcccccceeEEEEccCC-----ce
Q 001415 670 NSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP-----------ENLRATKISRLIFTNSG-----NA 733 (1082)
Q Consensus 670 ~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~s~~~-----~~ 733 (1082)
.| ....|..+.+++.|++.+.+++..............+ ....-.+|..+++.... +.
T Consensus 341 rf------y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 341 RF------YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred ee------eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 55 1467889999999999998887653322222211000 01123456566655432 34
Q ss_pred eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEE
Q 001415 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 812 (1082)
Q Consensus 734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iw 812 (1082)
+.+.-.+...+.|++.... .|...-...........+++++.++.|++.+.|. .|.|-+|
T Consensus 415 ~~~h~~~~~~~tW~~~n~~-------------------~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKT-------------------SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred eEEecCcceEEEEeccCcc-------------------cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 4455556778888776322 1111111000111346789999999999999996 6999999
Q ss_pred ecCCCeeEEEE---CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415 813 NMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 813 d~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 889 (1082)
|+++|-....+ ..|..+|+.++... -++.+++++.+|.+.+||..+..++..++ -...++++..+.....++.+.
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhc
Confidence 99999998888 58999999999998 78899999999999999999988887776 345688899999999999999
Q ss_pred CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415 890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH 968 (1082)
Q Consensus 890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~ 968 (1082)
.|-.|+++|+.+ .++.+.+.||. ..|++++|||||++|++ +.|++|++||+.++.++-.+.. ..+.++
T Consensus 554 ddf~I~vvD~~t-----~kvvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~s 622 (910)
T KOG1539|consen 554 DDFSIRVVDVVT-----RKVVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTS 622 (910)
T ss_pred CceeEEEEEchh-----hhhhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCccee
Confidence 999999999998 45677788888 78999999999999999 7899999999999999988865 568999
Q ss_pred EEEcCCCceEEEeecC-CcEEEEec
Q 001415 969 ATFSCDSQLVYACFLD-ATVCVFSA 992 (1082)
Q Consensus 969 l~~s~dg~~l~t~s~d-g~v~vwd~ 992 (1082)
+.|||+|.+|||+..| .-|++|.=
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999988 66999953
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-37 Score=289.09 Aligned_cols=295 Identities=20% Similarity=0.269 Sum_probs=244.8
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
.+.+|++.|+.++..+.+..++.+++.|.++.+|++.......-. ....+.||...|..++.++||
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCC
Confidence 344599999999999998889999999999999998654222111 111388999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC--Cc
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EA 510 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--~~ 510 (1082)
++.++++.|+++++||+.+++..+ .|.||...|.+++|++|++ .+++|+.|++|++|++..+. ..++..+ .+
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVC-KYTIHEDSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccE-EEEEecCCCcC
Confidence 999999999999999999997665 7899999999999999999 59999999999999976544 4444433 78
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
.|.+++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||. ..+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lca 208 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCA 208 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEe
Confidence 99999999998778999999999999999999888888889999888888888887 788
Q ss_pred EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc-------c
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY-------D 663 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~ 663 (1082)
+|+.||.+.+||++.++.+..+... ..|.+++|+|+..+|+.+. +..|+|||+.++ ..+..+..... .
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fspnrywL~~at-~~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK-AVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccCC---CeEeeEEecCCceeEeecc-CCceEEEeccch-hhhhhccccccccccccCC
Confidence 8999999999999999998888643 3699999999887776655 456999999887 34333322111 2
Q ss_pred ccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415 664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~ 700 (1082)
+...+++| +++|..|+.|..|+.|++|.+.
T Consensus 284 ~~clslaw-------s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAW-------SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEE-------cCCCcEEEeeecCCcEEEEEee
Confidence 22224555 9999999999999999999874
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=281.81 Aligned_cols=294 Identities=16% Similarity=0.228 Sum_probs=246.6
Q ss_pred eeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1082)
Q Consensus 567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd 646 (1082)
+++.||.. .|.++.|++|.+++++++.||.+.|||.-+...+..+..... .|..++|+|.|+++++|+-|+...||+
T Consensus 49 r~LkGH~~-Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~--WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLN-KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS--WVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEeccccc-ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce--eEEEEEECCCCCeEEecCcCceeEEEe
Confidence 44444433 556666666666999999999999999999888888876654 899999999999999999999999998
Q ss_pred ecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEE
Q 001415 647 TSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 726 (1082)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 726 (1082)
+.+.... +.+++
T Consensus 126 ls~~d~~--------------------------------------g~~~v------------------------------ 137 (343)
T KOG0286|consen 126 LSTRDAE--------------------------------------GNVRV------------------------------ 137 (343)
T ss_pred ccccccc--------------------------------------cccee------------------------------
Confidence 7643100 00000
Q ss_pred EccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC
Q 001415 727 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG 806 (1082)
Q Consensus 727 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd 806 (1082)
...+. +|...+.|+.|-+|+.+|...+|
T Consensus 138 --------------------------------------------------~r~l~--gHtgylScC~f~dD~~ilT~SGD 165 (343)
T KOG0286|consen 138 --------------------------------------------------SRELA--GHTGYLSCCRFLDDNHILTGSGD 165 (343)
T ss_pred --------------------------------------------------eeeec--CccceeEEEEEcCCCceEecCCC
Confidence 00011 28888899999887766655568
Q ss_pred CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEE
Q 001415 807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 886 (1082)
Q Consensus 807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 886 (1082)
.+..+||+++++.+..|.+|.+.|.+++++|.+++.+++|+-|+..++||++.+.+++.|.+|.+.|+++.|.|+|.-++
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeee
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcc
Q 001415 887 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAP 965 (1082)
Q Consensus 887 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~ 965 (1082)
+|++|++.++||++..+.. ..+. +.....+|++++||-.|++|.+ ..|..+.+||.-.++.+..+. +|..+
T Consensus 246 tGSDD~tcRlyDlRaD~~~-----a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNR 317 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQEL-----AVYS-HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENR 317 (343)
T ss_pred ecCCCceeEEEeecCCcEE-----eeec-cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--ccCCe
Confidence 9999999999999985432 1111 3333478999999999999999 578999999999999888887 99999
Q ss_pred eeEEEEcCCCceEEEeecCCcEEEEe
Q 001415 966 ITHATFSCDSQLVYACFLDATVCVFS 991 (1082)
Q Consensus 966 i~~l~~s~dg~~l~t~s~dg~v~vwd 991 (1082)
|+++..+|||.-+++||.|.+++||.
T Consensus 318 vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999994
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-34 Score=309.05 Aligned_cols=489 Identities=17% Similarity=0.259 Sum_probs=344.0
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
.+..|..++|+|...+ +.++-..|.|.+||+.-+.++.+ +.+|.++|..++|.|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 5678999999999997 77888999999999999998875 889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 516 (1082)
+|+.|..|++|+.++.+++. ++.||-+-|..+.|.+.-. +++|+|+|.+|+||++.+++++..++||..-|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999988776 8999999999999999888 899999999999999999999999999999999999
Q ss_pred eeecCCceEEEEecCCCcEEEEecCCCCceeeecCC-CCceEE------EEEccCC--CeeeecccccceeEEEecCCCC
Q 001415 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 587 (1082)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~------~~~s~d~--~~~~~~~~~~~i~~~~~~~~~~ 587 (1082)
|+|..| .++++|.|.+||+||+...+......+. ...... +--.+|. +.++.|| +..+.-++|+|.-.
T Consensus 143 FhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH-DRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH-DRGVNWAAFHPTLP 219 (1202)
T ss_pred cCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc-ccccceEEecCCcc
Confidence 999874 8999999999999999764443322210 000000 0001111 1445555 44788899999999
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccc
Q 001415 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1082)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1082)
.+++|+.|..|++|.+..-+....-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999987665444444455668999999999999999999999999998755 22322221
Q ss_pred ccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415 668 SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 747 (1082)
Q Consensus 668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~ 747 (1082)
..++...++.+|..+.+++ +.|+.+.+|.
T Consensus 291 --------------------------------------------------endRFW~laahP~lNLfAA-gHDsGm~VFk 319 (1202)
T KOG0292|consen 291 --------------------------------------------------ENDRFWILAAHPELNLFAA-GHDSGMIVFK 319 (1202)
T ss_pred --------------------------------------------------cCCeEEEEEecCCcceeee-ecCCceEEEE
Confidence 3445667888888885555 4554555564
Q ss_pred ccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeE--EEECC
Q 001415 748 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM--ATFMP 825 (1082)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~--~~~~~ 825 (1082)
++ ...++.++ ++..|....+..|+-+|+.+.+.. ..++.
T Consensus 320 le-----------------------------------RErpa~~v----~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~ 360 (1202)
T KOG0292|consen 320 LE-----------------------------------RERPAYAV----NGNGLFYVKDRFIRSYDLRTQKDTAVASLRR 360 (1202)
T ss_pred Ec-----------------------------------ccCceEEE----cCCEEEEEccceEEeeeccccccceeEeccC
Confidence 43 12233332 344555555888999999875433 33443
Q ss_pred C---CCCeeEEEEecCCCcEEEEEeCC-CcEEEEeccccee-----eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEE
Q 001415 826 P---PPAATFLAFHPQDNNIIAIGMDD-SSIQIYNVRVDEV-----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 896 (1082)
Q Consensus 826 ~---~~~v~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~-----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v 896 (1082)
. ..++.++.++|..+..+++...| |.-.++.+..... ....++ ....++-.. .+++.+---.+..+.+
T Consensus 361 ~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~--tG~~a~fva-rNrfavl~k~~~~v~i 437 (1202)
T KOG0292|consen 361 PGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG--TGEGALFVA-RNRFAVLDKSNEQVVI 437 (1202)
T ss_pred CCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC--CCCceEEEE-ecceEEEEecCcceEE
Confidence 3 35688999999555555554444 3444454432210 001111 112222222 2222222222555666
Q ss_pred EEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCc
Q 001415 897 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ 976 (1082)
Q Consensus 897 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~ 976 (1082)
=++..... +.+..+ ..+..+-+..+|.+|+. +...|.+||+.....+..+. -..|.-++||+|.+
T Consensus 438 k~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~----~s~vkyvvws~dm~ 502 (1202)
T KOG0292|consen 438 KNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK----VSKVKYVVWSNDMS 502 (1202)
T ss_pred ecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe----cCceeEEEEcCccc
Confidence 66655211 111111 23455666666766554 45678999998888888776 46788999999988
Q ss_pred eEEEeecCCcEEEEe
Q 001415 977 LVYACFLDATVCVFS 991 (1082)
Q Consensus 977 ~l~t~s~dg~v~vwd 991 (1082)
++|.-+ ..+|.|.+
T Consensus 503 ~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 503 RVALLS-KHTITIAD 516 (1202)
T ss_pred hhhhcc-cceEEEEe
Confidence 766554 34555554
No 27
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-34 Score=305.87 Aligned_cols=545 Identities=18% Similarity=0.226 Sum_probs=372.1
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC---eEEEEeC
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYS 440 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 440 (1082)
..|.|.+ ++|.| ....|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 35554 46789999987663333 3899999999999999888 8999999
Q ss_pred CCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc--eeEEeecCCcCeEEEeee
Q 001415 441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPH 518 (1082)
Q Consensus 441 d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~ 518 (1082)
|+.|++|.+... .+....++.+|...+.|+ ...-. ...+.+.|+++.+||.+..+ +...+.-..+.+..+|+
T Consensus 78 D~~v~lW~l~~~-~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL- 151 (764)
T KOG1063|consen 78 DGRVILWKLRDE-YLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL- 151 (764)
T ss_pred CCcEEEEEEeeh-heEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH-
Confidence 999999999943 344555777776665554 33322 22223689999999974444 11111111111111111
Q ss_pred ecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeE
Q 001415 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1082)
Q Consensus 519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 598 (1082)
++.++... -.++.|+.+..|
T Consensus 152 -----------------------------------------~~~~~~~~-------------------~lla~Ggs~~~v 171 (764)
T KOG1063|consen 152 -----------------------------------------AALKNNKT-------------------FLLACGGSKFVV 171 (764)
T ss_pred -----------------------------------------hhhccCCc-------------------EEEEecCcceEE
Confidence 11111000 024445556666
Q ss_pred EEEECCCcceEEEEecCCCCCCcCeEEEcCCC---CEEEEEECCCcEEEEEecCCc--------------------cce-
Q 001415 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDG---CLLAVSTNDNGIKILATSDGI--------------------RLL- 654 (1082)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~l~~~~~dg~i~iwd~~~~~--------------------~~~- 654 (1082)
.++.-.+.+........+|...|.+++|...+ -+|++++.|..||||.+.-+. ...
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 66654444433333334445589999998744 488999999999999875332 000
Q ss_pred ---------eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccC-cccccceeE
Q 001415 655 ---------RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKISR 724 (1082)
Q Consensus 655 ---------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 724 (1082)
..+.+|...+. ++.| .|.+..|++++.|.++.+|...+....- ....++.. .+......+
T Consensus 252 ~i~~~is~eall~GHeDWV~--sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiW-v~~vRlGe~gg~a~GF~g 321 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVY--SVWW-------HPEGLDLLSASADKSMIIWKPDENTGIW-VDVVRLGEVGGSAGGFWG 321 (764)
T ss_pred eEEEEEehhhhhcCcccceE--EEEE-------ccchhhheecccCcceEEEecCCccceE-EEEEEeecccccccceee
Confidence 11224554444 4555 8889999999999999999977532111 11112221 124456788
Q ss_pred EEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe
Q 001415 725 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 804 (1082)
Q Consensus 725 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~ 804 (1082)
..|+|+++.+++-+..|..++|.... ...|... ....+|...|..++|+|.|.+|.+.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~--------~~iSGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE--------PVISGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec--------cccccccccceeeeecCCCCEEEEe
Confidence 99999999999999999999996111 1223322 1123599999999999999999998
Q ss_pred e-CCeEEEEecC----CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc---------------------
Q 001415 805 S-GGKISLFNMM----TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR--------------------- 858 (1082)
Q Consensus 805 s-dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~--------------------- 858 (1082)
+ |-+-|+|-.- +...+..-+.|....+|++|-+ ....+++|.+...+|+|+..
T Consensus 380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 8 6677776543 1233444556788899999998 67788889888999999751
Q ss_pred ----------------------cce---------------------------------eeeeecccccCEEEEEEeCCCC
Q 001415 859 ----------------------VDE---------------------------------VKSKLKGHSKRITGLAFSHALN 883 (1082)
Q Consensus 859 ----------------------~~~---------------------------------~~~~l~~h~~~V~~l~~s~d~~ 883 (1082)
+|. .+.++.||.-.|++++.+|+|+
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn 538 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN 538 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence 010 1122457888999999999999
Q ss_pred EEEEEeCCC-----cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeee
Q 001415 884 VLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW 957 (1082)
Q Consensus 884 ~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~ 957 (1082)
++||++... .|++|+..+... .....+|. ..|+.++|||||++|++ +.|+++.+|....... ..+
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~ 609 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEF 609 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccc-hhh
Confidence 999998754 489999988554 23455666 57899999999999999 8999999998743322 111
Q ss_pred c---cCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCc--eeeeeeCCCeecCCCCCCCCceeeEEEEeCCCC----
Q 001415 958 V---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP---- 1028 (1082)
Q Consensus 958 ~---~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~---- 1028 (1082)
. ...|...|.+..|+||+.++||+|.|.+|+||..... +.+..+. .++.+ ...++++|.|-+.
T Consensus 610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a---~~~~~-----~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 610 RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA---CLKFS-----LAVTAVAYLPVDHNEKG 681 (764)
T ss_pred hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc---hhccC-----CceeeEEeecccccccc
Confidence 1 4579999999999999999999999999999999988 5555542 12222 2234677766443
Q ss_pred CeEEEEecCCcEEEEccC
Q 001415 1029 NEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus 1029 ~~l~s~~~dg~v~vW~~~ 1046 (1082)
..+++|-+.|.|.+|...
T Consensus 682 ~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ceEEEEecccEEEEEecc
Confidence 378999999999999976
No 28
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.7e-34 Score=289.89 Aligned_cols=509 Identities=19% Similarity=0.262 Sum_probs=368.6
Q ss_pred ceeeecCCCCCceEEEEecCCCeEEEEEcCCCc--------EEEEEccccceeeeeceeeeccCCCCcccccccccCCCC
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD--------IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 421 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~--------i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 421 (1082)
.....++|.+.|.|++.+||.- ++++|...|+ ++|||..+-..+.. +..-..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V-------------------~g~f~~ 155 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHV-------------------IGFFDR 155 (626)
T ss_pred hcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeee-------------------eccccc
Confidence 3446778999999999999987 4888776663 99999877666653 555667
Q ss_pred ceeEEEEec--CCCeEEEE--eCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc
Q 001415 422 SVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1082)
Q Consensus 422 ~V~~l~~sp--dg~~las~--~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~ 497 (1082)
.|.|++||+ .|.+|+.. +.+..+.+||++.+.... ....-...|....|.|.+.. ++++++ .+.+.+|+.+
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~ 230 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLR 230 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEcc
Confidence 999999999 45566654 345679999999887655 34455678999999999987 566666 5889999999
Q ss_pred CCceeEE---eecC-CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415 498 NGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1082)
Q Consensus 498 ~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 573 (1082)
.+...++ +..+ ...|.+++|.++++ +++|..+|.|.||+..+.........|.+.|.+++...+|.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt------- 300 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT------- 300 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-------
Confidence 8876653 3333 35689999877664 89999999999999877665555557888888888888876
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1082)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~ 653 (1082)
|++|+.|..|..|| ..-+.++..+......+++.++-...+ |++|...+.|..=.+.++..+
T Consensus 301 ---------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 301 ---------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ---------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE
Confidence 88899999999999 455555555555555566666544333 666666555543333222100
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 733 (1082)
...+|......++.+|+.++
T Consensus 363 ------------------------------------------------------------~v~gh~delwgla~hps~~q 382 (626)
T KOG2106|consen 363 ------------------------------------------------------------TVQGHGDELWGLATHPSKNQ 382 (626)
T ss_pred ------------------------------------------------------------EEEecccceeeEEcCCChhh
Confidence 00126677888999999999
Q ss_pred eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEE
Q 001415 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 812 (1082)
Q Consensus 734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iw 812 (1082)
+++++.|+.+++|+-.. -+|... -..++.|+.|+|.| .+|.|. .|...+.
T Consensus 383 ~~T~gqdk~v~lW~~~k---------------~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWNDHK---------------LEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred eeeccCcceEEEccCCc---------------eeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 99999999999996110 122211 35678899999999 888887 6999999
Q ss_pred ecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeee-cccccCEEEEEEeCCCCEEEEEeC
Q 001415 813 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL-KGHSKRITGLAFSHALNVLVSSGA 890 (1082)
Q Consensus 813 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~ 890 (1082)
|.++...+..-.. ...+++++|+| +|.+||+|+.|+.|+||.+..+ ...... +.|.++|+.+.||+|+++|.+-+.
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred ecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 9999666555554 88899999999 9999999999999999998754 322222 334489999999999999999999
Q ss_pred CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeec--cCCCCcceeE
Q 001415 891 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV--PRESSAPITH 968 (1082)
Q Consensus 891 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~--~~~h~~~i~~ 968 (1082)
|-.|..|.... +... ..+..+.|... .|..-|. ...|...|..
T Consensus 512 d~eiLyW~~~~--~~~~-------------ts~kDvkW~t~--------------------~c~lGF~v~g~s~~t~i~a 556 (626)
T KOG2106|consen 512 DYEILYWKPSE--CKQI-------------TSVKDVKWATY--------------------TCTLGFEVFGGSDGTDINA 556 (626)
T ss_pred ceEEEEEcccc--Cccc-------------ceecceeeeee--------------------EEEEEEEEecccCCchHHH
Confidence 99999993322 1100 11233333221 1111111 1245778888
Q ss_pred EEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEcc
Q 001415 969 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus 969 l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~ 1045 (1082)
++-|.+.+++|+|.+.|+|++|...--+..+.+ +.+ .+|+++ ...++|.-.| .++++.+.|..|..|++
T Consensus 557 ~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~--~ghs~~---vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 557 VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEY--GGHSSH---VTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhhhhhhccccCceEEEEccccCCCcccc--eee--ccccce---eEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 899999999999999999999998765554332 222 255455 4478998865 45666669999999986
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=287.77 Aligned_cols=338 Identities=17% Similarity=0.248 Sum_probs=282.3
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+..|++.|.+++.+|+.+++|+|+.|....||++.++.... ++.+|.+.|+++.||.||. +||||+.+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 78899999999999999999999999999999999999555 7899999999999999999 899999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
..++.....+......+.=+.|||.. ..|++|+.||.+-+|.+.+......+.+|..++++-.|.|||+
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--------- 203 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--------- 203 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc---------
Confidence 99999999987667778888999855 7999999999999999998877788888888888877777776
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
+++++..||+|++||..+++++..+....+ ...+++.++..+..++.|..++.+++-+..+++ .+.
T Consensus 204 ------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~ 269 (399)
T KOG0296|consen 204 ------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVN 269 (399)
T ss_pred ------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEE
Confidence 799999999999999999999988875543 357889999999999999999988887665551 111
Q ss_pred ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415 656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 735 (1082)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 735 (1082)
...+ .+..+.
T Consensus 270 ~~n~----------------------------------------------------------------------~~~~l~ 279 (399)
T KOG0296|consen 270 CNNG----------------------------------------------------------------------TVPELK 279 (399)
T ss_pred ecCC----------------------------------------------------------------------CCcccc
Confidence 1100 000000
Q ss_pred ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec
Q 001415 736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 814 (1082)
Q Consensus 736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~ 814 (1082)
.. .......|.++.++..-.+.|+|+ ||+|.|||+
T Consensus 280 ~~--------------------------------------------~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 280 PS--------------------------------------------QEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred cc--------------------------------------------chhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 00 000123344455555666778887 899999999
Q ss_pred CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcE
Q 001415 815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 894 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i 894 (1082)
...+....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+.++++|+|.|++.
T Consensus 316 a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 316 AASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred ccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 8877666655 788899999987 4688899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC
Q 001415 895 CVWSSD 900 (1082)
Q Consensus 895 ~vwd~~ 900 (1082)
+|+++.
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999864
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=279.09 Aligned_cols=295 Identities=15% Similarity=0.227 Sum_probs=249.4
Q ss_pred ccccceeEEEEccC-CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415 717 LRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 795 (1082)
Q Consensus 717 ~~~~~i~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 795 (1082)
+|.+.|..++..+. ...+++++.|..+.+|++... |.+.|.+... +.+ |...|..++.+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~s 72 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVLS 72 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEEc
Confidence 39999999999887 467889999999999998753 3344444443 333 99999999999
Q ss_pred cCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc--ccC
Q 001415 796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKR 872 (1082)
Q Consensus 796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h--~~~ 872 (1082)
+||++.++++ |+.+++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|.+|+...+ +..++..+ .+-
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREW 150 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCc
Confidence 9999999998 89999999999999999999999999999999 8999999999999999998754 44444333 789
Q ss_pred EEEEEEeCC--CCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEcc
Q 001415 873 ITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 949 (1082)
Q Consensus 873 V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~ 949 (1082)
|+|+.|+|+ ..+|++++.|++|++||+++. +....+.||. +.++.+++||||..+++ +.||.+.+||++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 999999998 789999999999999999993 4556666777 78999999999999999 689999999999
Q ss_pred CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC
Q 001415 950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1029 (1082)
Q Consensus 950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~ 1029 (1082)
.++++..+ +|...|.+++|+|+.-+|+.+ .+..|+|||++++.++..+.+..--+ .-....+..++++|++ ||.
T Consensus 223 ~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred CCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence 99997666 578999999999987766655 46679999999999998776444333 2234457889999999 799
Q ss_pred eEEEEecCCcEEEEccCC
Q 001415 1030 EFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1030 ~l~s~~~dg~v~vW~~~~ 1047 (1082)
.|+.|..|+.|++|.+..
T Consensus 297 tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEeeecCCcEEEEEeec
Confidence 999999999999998753
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-36 Score=293.91 Aligned_cols=303 Identities=17% Similarity=0.273 Sum_probs=265.8
Q ss_pred ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
...++.+|..+|+.+-|+|+-. ++|+++.|++|++||..+|+.... ++||++.|..++|+
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~ 159 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFD 159 (406)
T ss_pred chhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEe
Confidence 3446778999999999999998 799999999999999999998653 89999999999999
Q ss_pred cCCCeEEEEeCCCeEEEEEccCC-ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC
Q 001415 430 PDGSLFGVAYSRHIVQIYSYHGG-DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~~~-~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 508 (1082)
..|++||+++.|-.+++||.++. ++++ .+.+|...|.++.|-|.|. +++|++.|.+|+.|++.+|.+++++.+|
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~~~c~k---s~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTFFRCIK---SLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred cCccEEEecCCccchhheeHHHHHHHHH---HhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 99999999999999999999873 3344 6889999999999999998 8999999999999999999999999999
Q ss_pred CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec-CCCC
Q 001415 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-TTKN 587 (1082)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~-~~~~ 587 (1082)
...|..+.. ..||.++++++.|.++++|-+.+..+...+..|..+|.+++|.|....- . +....-+ ..+.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~--~-----i~~at~~~~~~~ 305 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP--S-----ISEATGSTNGGQ 305 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCc--c-----hhhccCCCCCcc
Confidence 999998885 5677999999999999999999999999999999999999999876411 0 0000001 1345
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccc
Q 001415 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1082)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1082)
++++++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.+. ++.+.+..|..-+.
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt-- 380 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVT-- 380 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeE--
Confidence 888999999999999999999999998876 8999999999999999999999999999998 78888888777666
Q ss_pred ccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 668 SENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
++.| ..+..++++|+-|.++++|.
T Consensus 381 ~lDf-------h~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 381 SLDF-------HKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEec-------CCCCceEEeccccceeeeee
Confidence 6777 55566899999999999996
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-34 Score=295.48 Aligned_cols=460 Identities=15% Similarity=0.191 Sum_probs=354.4
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+..++..|.++.|.|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45588999999999999999999999999999999988777 5666778999999998777 899999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
..+++.++.|.+|.+-|.+++.||.. .++++++.|-+|++||++..- +..++.+|.+.|..++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999999876 599999999999999998754 4568889999999998888654
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEecCCcc
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
+.|++++-|++|+||.+.+..+..++++|.. .|+++.|-+ |..+|++|++|..++|||.++. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHek--GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHEK--GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeecccc--CcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 4799999999999999999999999987765 799999987 4579999999999999999988 8
Q ss_pred ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415 653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 732 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 732 (1082)
+++++.+|...+. .+.| .|.-..+++|+.||++++|+..+......+.. ...++.+++-.+.+.
T Consensus 219 CV~TLeGHt~Nvs--~v~f-------hp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 219 CVQTLEGHTNNVS--FVFF-------HPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKGDG 282 (794)
T ss_pred HHHHhhcccccce--EEEe-------cCCCcEEEEecCCccEEEecCcceehhhhhhc-------CCceEEEEeecCCCC
Confidence 9999999998876 5666 78888999999999999999876543332221 457899999999888
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC--CeEE
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG--GKIS 810 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd--g~i~ 810 (1082)
.++.+..+|.+.+= -......+.+++.|+++-+... -.+.
T Consensus 283 ~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~ 324 (794)
T KOG0276|consen 283 KIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVN 324 (794)
T ss_pred eEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEEcCceeeeee
Confidence 88888888877652 1222334555666655544331 1111
Q ss_pred EE------ecCCCeeEE----EECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415 811 LF------NMMTFKTMA----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 880 (1082)
Q Consensus 811 iw------d~~~~~~~~----~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 880 (1082)
+- ++..|+.+. .+-...-....++.+| +|+++++++ ||.-.||..-..+ ..+.+.-....|++
T Consensus 325 ~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~ 397 (794)
T KOG0276|consen 325 LKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAA 397 (794)
T ss_pred ceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcC
Confidence 11 222332221 1111122245688899 898887665 8888888632211 12445567788999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccC
Q 001415 881 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 960 (1082)
Q Consensus 881 d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~ 960 (1082)
|....++-..++.|+++ +..+..+ .+.. -..+.+--.|.+|.+..++.+++||.++++.++.+..
T Consensus 398 dsne~avRes~~~vki~--knfke~k--si~~----------~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v- 462 (794)
T KOG0276|consen 398 DSNEFAVRESNGNVKIF--KNFKEHK--SIRP----------DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV- 462 (794)
T ss_pred CCCeEEEEecCCceEEE--ecceecc--cccc----------ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee-
Confidence 98888888888889988 3322111 1110 0112233356677778899999999999999998864
Q ss_pred CCCcceeEEEEcCCCceEEEeecCC
Q 001415 961 ESSAPITHATFSCDSQLVYACFLDA 985 (1082)
Q Consensus 961 ~h~~~i~~l~~s~dg~~l~t~s~dg 985 (1082)
....+.|+.+|.+++.++.|.
T Consensus 463 ----~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 463 ----TSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred ----ccceeEEecCCCEEEEEecCc
Confidence 456789999999999888664
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.5e-35 Score=269.46 Aligned_cols=297 Identities=18% Similarity=0.294 Sum_probs=238.8
Q ss_pred eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccC
Q 001415 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1082)
Q Consensus 372 ~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~ 451 (1082)
-+||+++.|.+|++|...+|.+..+ +....+.|+.+.+.||+++||+++. ..|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence 3899999999999999999999875 4455778999999999999999975 5699999999
Q ss_pred CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC
Q 001415 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531 (1082)
Q Consensus 452 ~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 531 (1082)
+..- +..++.+|...|+++.|-.+|+ .+++||+||+++|||++...+.+.+. |..+|+++..+|.. .-|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8754 4558999999999999999999 89999999999999999977777766 77899999887654 34555655
Q ss_pred CCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEE
Q 001415 532 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 611 (1082)
Q Consensus 532 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 611 (1082)
+|.|++||+. +..+...
T Consensus 145 sg~irvWDl~---------------------------------------------------------------~~~c~~~ 161 (311)
T KOG0315|consen 145 SGNIRVWDLG---------------------------------------------------------------ENSCTHE 161 (311)
T ss_pred CCcEEEEEcc---------------------------------------------------------------CCccccc
Confidence 5555555554 3333333
Q ss_pred EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccC
Q 001415 612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESN 691 (1082)
Q Consensus 612 ~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 691 (1082)
+-.+.. ..|.++...|||.+++.+...|..++|++-+. .....+.
T Consensus 162 liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~l~--------------------------------- 206 (311)
T KOG0315|consen 162 LIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASELE--------------------------------- 206 (311)
T ss_pred cCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCC-Cccccce---------------------------------
Confidence 322222 36889999999999999999999999987553 1000000
Q ss_pred CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCC
Q 001415 692 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 771 (1082)
Q Consensus 692 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1082)
++..
T Consensus 207 -----------------------------P~~k----------------------------------------------- 210 (311)
T KOG0315|consen 207 -----------------------------PVHK----------------------------------------------- 210 (311)
T ss_pred -----------------------------Ehhh-----------------------------------------------
Confidence 0000
Q ss_pred CcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCC-eeEEEECCCCCCeeEEEEecCCCcEEEEEeCC
Q 001415 772 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 849 (1082)
Q Consensus 772 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d 849 (1082)
+ ..|...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|
T Consensus 211 --------~--~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd 279 (311)
T KOG0315|consen 211 --------F--QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSD 279 (311)
T ss_pred --------e--ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCC
Confidence 0 11777788888999999999887 688999999887 66778899999999999999 99999999999
Q ss_pred CcEEEEecccceeeeeecccccCEEEEEEe
Q 001415 850 SSIQIYNVRVDEVKSKLKGHSKRITGLAFS 879 (1082)
Q Consensus 850 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 879 (1082)
+.+++|++..++.++...+|.....|++..
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999988888764
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=265.37 Aligned_cols=273 Identities=15% Similarity=0.244 Sum_probs=228.3
Q ss_pred ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEE
Q 001415 732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISL 811 (1082)
Q Consensus 732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~i 811 (1082)
-+|++++-|.+|++| +..+|.+...... ....|..+.+.||++.||+++.-.|++
T Consensus 11 viLvsA~YDhTIRfW----------------------qa~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa~~qhvRl 65 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFW----------------------QALTGICSRTIQH---PDSQVNRLEITPDKKDLAAAGNQHVRL 65 (311)
T ss_pred eEEEeccCcceeeee----------------------ehhcCeEEEEEec---CccceeeEEEcCCcchhhhccCCeeEE
Confidence 358888999988887 5567776654331 578899999999999999999999999
Q ss_pred EecCCCe--eEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415 812 FNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 812 wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 889 (1082)
||+.++. ++.++.+|...|+++.|.- +|+++++|++||+++|||++.-.+.+.++ |.++|+++..+|+..-|++++
T Consensus 66 yD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 66 YDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGD 143 (311)
T ss_pred EEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeec
Confidence 9999765 5899999999999999999 99999999999999999999966655555 779999999999999999999
Q ss_pred CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeec----cCCCCc
Q 001415 890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWV----PRESSA 964 (1082)
Q Consensus 890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~----~~~h~~ 964 (1082)
.+|.|++||+....+... ..++.. ..|.++...|||.+++++ ..|..++|++-+.+....+. ...|.+
T Consensus 144 qsg~irvWDl~~~~c~~~---liPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHE---LIPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred CCCcEEEEEccCCccccc---cCCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 999999999988543221 112111 568999999999999996 56899999987654333322 347899
Q ss_pred ceeEEEEcCCCceEEEeecCCcEEEEecCCc-eeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEE
Q 001415 965 PITHATFSCDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus 965 ~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
.+..+.+|||+++||++|.|.+++||+.++. +...++. || ...++ .++|+. |+.+|++|+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999988 5555555 54 23455 899998 79999999999999999
Q ss_pred ccCCCC
Q 001415 1044 EPLESE 1049 (1082)
Q Consensus 1044 ~~~~~~ 1049 (1082)
+++.++
T Consensus 286 ~~~~~k 291 (311)
T KOG0315|consen 286 DLSAGK 291 (311)
T ss_pred ccccCc
Confidence 999998
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=273.02 Aligned_cols=333 Identities=15% Similarity=0.180 Sum_probs=259.9
Q ss_pred ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
.+..+.+|++.|.+++.+|+.+ ++|||+.|..-.||+..+|..+.. +.+|++.|+|+.||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEc
Confidence 3445667999999999999777 799999999999999999997764 88999999999999
Q ss_pred cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC
Q 001415 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 509 (1082)
.||.+||+|+.+|.|+||...++.... .+.+....|.-+.|.|-+. +|+.|+.||.+.+|.+.++...+.+.||.
T Consensus 116 hdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred cCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 999999999999999999999998766 4545667888999999888 89999999999999999998899999999
Q ss_pred cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1082)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1082)
.++++=.|.|+ |+.++++..||+|++|++.++.+...+....+ ....++.++..+..+
T Consensus 191 ~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 191 SPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTL 248 (399)
T ss_pred CCcccccccCC--CceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCcccccccccee
Confidence 99999998765 68999999999999999999877765543221 133344455555578
Q ss_pred EEEeCCCeEEEEECCCcceEEEEecCCC------C---CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415 590 LAAGDDFSIKFWDMDSVQLLTSIDADGG------L---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1082)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~---~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1082)
+.|+.++.+++-+..+|+.+........ . ..|.++.++..=.+.|+|+-||+|.|||+...
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~---------- 318 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS---------- 318 (399)
T ss_pred EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------
Confidence 8888999999988888888776653100 0 01112222222233334444444444443221
Q ss_pred cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415 661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 740 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 740 (1082)
.....
T Consensus 319 ------------------------------------------~~R~~--------------------------------- 323 (399)
T KOG0296|consen 319 ------------------------------------------TLRHI--------------------------------- 323 (399)
T ss_pred ------------------------------------------hhhee---------------------------------
Confidence 00000
Q ss_pred CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCee
Q 001415 741 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 819 (1082)
Q Consensus 741 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~ 819 (1082)
+ .|...|..+.|-+ ..+|++++ +|.|+.||.++|++
T Consensus 324 ---------------------------------------c---~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 324 ---------------------------------------C---EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ---------------------------------------c---cCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 0 1667788888877 45666655 89999999999999
Q ss_pred EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc
Q 001415 820 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 858 (1082)
Q Consensus 820 ~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 858 (1082)
+.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-34 Score=280.72 Aligned_cols=300 Identities=22% Similarity=0.335 Sum_probs=267.8
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+.+|..+|+.+-|.|+-..+++++.|++|++||..+++... .++||.+.|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999999866 7999999999999999999 899999999999999
Q ss_pred ccC-CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 496 ATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 496 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
..+ -++++.+.+|...|.+++|.|.+ .+|++++.|.+|+.|+++++-+..++.+|..+|..+....||.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-------- 248 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-------- 248 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--------
Confidence 987 67888999999999999998876 6999999999999999999999999999999999888888887
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1082)
.+++++.|.+|++|-..++++...+..|.+ +|.+++|.|...+ . .|
T Consensus 249 -------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~-----~i------------ 294 (406)
T KOG0295|consen 249 -------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--P-----SI------------ 294 (406)
T ss_pred -------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--c-----ch------------
Confidence 789999999999999999998888888777 6888888775321 0 00
Q ss_pred eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415 655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 734 (1082)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 734 (1082)
.+
T Consensus 295 ---------------~~--------------------------------------------------------------- 296 (406)
T KOG0295|consen 295 ---------------SE--------------------------------------------------------------- 296 (406)
T ss_pred ---------------hh---------------------------------------------------------------
Confidence 00
Q ss_pred eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe
Q 001415 735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN 813 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd 813 (1082)
+++ ... .++++++++ |++|++||
T Consensus 297 at~-----------------------------------------------~~~---------~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 297 ATG-----------------------------------------------STN---------GGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred ccC-----------------------------------------------CCC---------CccEEEeecccceEEEEe
Confidence 000 000 345777777 78999999
Q ss_pred cCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc
Q 001415 814 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 893 (1082)
Q Consensus 814 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 893 (1082)
+.++.++.++.+|...|..++|+| +|+||+++.+|+++++||++++++...+..|..-|++++|..+..+++||+-|.+
T Consensus 321 v~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred ccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEc
Q 001415 894 LCVWSS 899 (1082)
Q Consensus 894 i~vwd~ 899 (1082)
+++|.-
T Consensus 400 ~KvwEc 405 (406)
T KOG0295|consen 400 VKVWEC 405 (406)
T ss_pred eeeeec
Confidence 999963
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-34 Score=278.14 Aligned_cols=299 Identities=17% Similarity=0.264 Sum_probs=252.8
Q ss_pred CcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEE
Q 001415 348 PKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1082)
Q Consensus 348 ~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1082)
|.++.+.+. |.+.|.|+++.|-.++ +++|+.|++|.|||+.+|++..+ +.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeee
Confidence 555556554 9999999999999996 99999999999999999998875 88999999999
Q ss_pred EEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1082)
Q Consensus 427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 506 (1082)
++|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++|||+++...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999999888 7889999999999999988 89999999999999999999999999
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
||..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++..|. .
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~---------------------e 331 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK---------------------E 331 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc---------------------h
Confidence 999999999886654 47999999999999999998888877777776666665554 4
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1082)
..|++++.|. |+.|++..|..+..+.++.. -|.+++.+.|| ++++|+++|.+.+||..++. ..+.......+.
T Consensus 332 ~~fASas~dn-ik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg~-nyQ~~~t~vqpG-- 404 (460)
T KOG0285|consen 332 NLFASASPDN-IKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH-NYQRGQTIVQPG-- 404 (460)
T ss_pred hhhhccCCcc-ceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcCc-ccccccccccCC--
Confidence 4677877765 89999999999988877665 68889988877 67889999999999998883 222221110000
Q ss_pred cccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415 667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 746 (1082)
.+ .....|.+.+|...|..|+++..|..|++|
T Consensus 405 ----------------------------------------Sl--------~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 405 ----------------------------------------SL--------ESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred ----------------------------------------cc--------ccccceeEEeecccCceEEeccCCcceEEE
Confidence 00 045678889999999999999999999999
Q ss_pred ecc
Q 001415 747 KWQ 749 (1082)
Q Consensus 747 ~~~ 749 (1082)
.-+
T Consensus 437 keD 439 (460)
T KOG0285|consen 437 KED 439 (460)
T ss_pred ecc
Confidence 643
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-33 Score=283.28 Aligned_cols=288 Identities=19% Similarity=0.300 Sum_probs=250.7
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
....|++++|+.+|. +||+|+.||.++||+...+. +. .+..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 457899999999999 79999999999999986543 33 3889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 516 (1082)
+++.|+++.+||..++.... .+.-|..+-..+.|-.+.. +++++.|+.|+|+-+....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999998665 5667888878899987776 89999999999999999999999999999999999
Q ss_pred eeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC-CCEEEEEeCC
Q 001415 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDD 595 (1082)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 595 (1082)
|.+.. .+|++++.|+++++|..........+..|...|..+.|+|+|. +..+|. +..+++++.|
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD 431 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence 87554 7999999999999999999899999999999999999999987 334443 3468889999
Q ss_pred CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD 675 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1082)
++|++||+..+.++..+..|.. +|.+++|+|+|+++++|+.||.|.+|+..++ ++++...
T Consensus 432 stV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~----------------- 491 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQ----------------- 491 (524)
T ss_pred CeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCCeeEeccccch-heeEeec-----------------
Confidence 9999999999999999976655 8999999999999999999999999999887 4443332
Q ss_pred ccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415 676 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748 (1082)
Q Consensus 676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 748 (1082)
..+.|..++|+.+|..+.++..|+.+++-|+
T Consensus 492 ------------------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ------------------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ------------------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2345777888888888888888888887654
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=279.25 Aligned_cols=293 Identities=18% Similarity=0.270 Sum_probs=240.3
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
++..|+++|+-+.||++|+|||+++.|.+..||.+.....++...++.+|..+|..+.||||++ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 5889999999999999999999999999999999987776777779999999999999999999 89999999999999
Q ss_pred EccCCceeEEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415 495 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1082)
Q Consensus 495 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 573 (1082)
|+.+|.+.+.+. +|...+.+++|.|++ ..+++|+.|+++..||++.... ..+.+.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDgn~~---------------------~~W~gvr 353 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDGNIL---------------------GNWEGVR 353 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCcchh---------------------hcccccc
Confidence 999999988765 356789999997655 7899999999999999975321 1122223
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1082)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~ 653 (1082)
...+..+++.+||+++++.+.|..|++++.++......+..+. +|+++.+|.||+++++.-.+..+++||+... ..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~l 429 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLALVNLQDQEIHLWDLEEN-KL 429 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEEEEcccCeeEEeecchh-hH
Confidence 3356666677777799999999999999998877665555443 5999999999999999999999999999854 44
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 733 (1082)
++.+.+|.... +
T Consensus 430 v~kY~Ghkq~~--------------------------------------------------------------------f 441 (519)
T KOG0293|consen 430 VRKYFGHKQGH--------------------------------------------------------------------F 441 (519)
T ss_pred HHHhhcccccc--------------------------------------------------------------------e
Confidence 44444432211 0
Q ss_pred eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee-cCCCeEEEee-CCeEEE
Q 001415 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISL 811 (1082)
Q Consensus 734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~l~~~s-dg~i~i 811 (1082)
++ .-||- .+.+++++|+ |++|+|
T Consensus 442 iI-------------------------------------------------------rSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 442 II-------------------------------------------------------RSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred EE-------------------------------------------------------EeccCCCCcceEEecCCCceEEE
Confidence 11 11111 2456889998 699999
Q ss_pred EecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415 812 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 859 (1082)
Q Consensus 812 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 859 (1082)
|+..+++++..+.+|...|+||+|+|.+..++|+|++||+||||....
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999999999999999999999999999998653
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=255.21 Aligned_cols=294 Identities=19% Similarity=0.331 Sum_probs=225.5
Q ss_pred eecCCCCCceEEEEecC-CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415 353 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spd-g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1082)
.+-+|++.|+.++|+|- |. +||+++.|+.|+||+...+....- ...+-.+|+..|.++||||.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 55669999999999999 87 799999999999999985322211 11124589999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC---ceeEEeecC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 508 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h 508 (1082)
|++||+|+.|.++.||.-..++ .....++.||...|.|++||++|. +||++++|++|.||.+..+ .++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877554 444568999999999999999999 8999999999999998854 466789999
Q ss_pred CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCC---CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1082)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~ 585 (1082)
...|..+.|+|.. .+|++++.|.+|++|+-... ....++..+.. .+.+++|++.
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~---------------------TVW~~~F~~~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN---------------------TVWSLAFDNI 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc---------------------eEEEEEecCC
Confidence 9999999999987 49999999999999976521 12334444444 4555556666
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1082)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1082)
|.++++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|+++.....
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~--------------- 263 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS--------------- 263 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCC---------------
Confidence 668999999999999986522 11 1222357778888 558999999999999875432
Q ss_pred ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC-CceeeecccCCeEE
Q 001415 666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHL 744 (1082)
Q Consensus 666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~ 744 (1082)
|++..+ + .+.-....|...|+++.|+|. .++|++++.||.++
T Consensus 264 --------------~d~p~~------------~-----------l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 264 --------------PDEPSW------------N-----------LLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred --------------CCCchH------------H-----------HHHhhhcccccccceEEEcCCCCCceeecCCCceEE
Confidence 000000 0 000001227789999999995 67899999999999
Q ss_pred Eeec
Q 001415 745 LWKW 748 (1082)
Q Consensus 745 iw~~ 748 (1082)
+|.+
T Consensus 307 ~W~l 310 (312)
T KOG0645|consen 307 FWEL 310 (312)
T ss_pred EEEe
Confidence 9975
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.3e-33 Score=263.84 Aligned_cols=290 Identities=19% Similarity=0.245 Sum_probs=243.6
Q ss_pred ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
....+.+|+++|..+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|.++|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence 3446677999999999999999 59999999999999975433221 1478999999999999
Q ss_pred cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC
Q 001415 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 509 (1082)
+|++.|++++.|.+|+.||+++|++.+ .+++|..-|+++.-+.-|.. ++.|++.|+++++||+++...++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999887 78899999999996666766 78999999999999999999998886 45
Q ss_pred cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1082)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1082)
-.+++++|.... ..+++|+-|+.|++||++.......+.+|.+.|+.+..+++|. ++
T Consensus 175 yqltAv~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs---------------------~l 231 (338)
T KOG0265|consen 175 YQLTAVGFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS---------------------FL 231 (338)
T ss_pred eeEEEEEecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------cc
Confidence 678888886444 6899999999999999999889999999999888888888876 78
Q ss_pred EEEeCCCeEEEEECCC----cceEEEEecCCCCC--CcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415 590 LAAGDDFSIKFWDMDS----VQLLTSIDADGGLP--ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1082)
Q Consensus 590 ~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1082)
++-+.|.++++||++. .+++..+.++.+.. ....++|+|+++.+..|+.|..+++||.... ..+..
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyk------- 303 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYK------- 303 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc-cEEEE-------
Confidence 8999999999999874 34577777665532 3457899999999999999999999997543 22211
Q ss_pred ccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeE
Q 001415 664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 743 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 743 (1082)
+|+ |.+.|..+.|+|....+.+++.|.+|
T Consensus 304 -------------------------------------------------lpG--h~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 304 -------------------------------------------------LPG--HYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred -------------------------------------------------cCC--cceeEEEeeecCCCcEEEEeccCcee
Confidence 233 78888999999999999999999888
Q ss_pred EE
Q 001415 744 LL 745 (1082)
Q Consensus 744 ~i 745 (1082)
.+
T Consensus 333 ~l 334 (338)
T KOG0265|consen 333 YL 334 (338)
T ss_pred Ee
Confidence 75
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-33 Score=304.56 Aligned_cols=274 Identities=15% Similarity=0.210 Sum_probs=235.2
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
....+.+..|++|+..++.+..|..|++|.+...+..+- + +...
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~l------------------------k---~~~~--------- 420 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKL------------------------K---DASD--------- 420 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccc------------------------c---chhh---------
Confidence 456789999999999999999999999997753221000 0 0000
Q ss_pred CCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415 798 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 876 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 876 (1082)
...+-+.+ |-.+.+.|-.+.....++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++...+||..+|+.+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 01111222 22356667777777888999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceee
Q 001415 877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 955 (1082)
Q Consensus 877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 955 (1082)
.|+|-|-|+||+|.|++.++|..+. ...++++.+|. ..|.++.|+|+..|+++ +.|.++++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999988 45677888888 68999999999999999 689999999999999999
Q ss_pred eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEe
Q 001415 956 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus 956 ~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
.|. ||.++|++++|||+|++|++|++||.|++||+.+++++..+. +| ...++ ++.|+. ||..||+||
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999999888 77 33355 899998 799999999
Q ss_pred cCCcEEEEccCCCC
Q 001415 1036 SDGGVHVFEPLESE 1049 (1082)
Q Consensus 1036 ~dg~v~vW~~~~~~ 1049 (1082)
.|++|++||+....
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997766
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=261.47 Aligned_cols=294 Identities=21% Similarity=0.333 Sum_probs=238.4
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..... -...+++|.+.|..+.|.+|+. .++++|.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 4789999999999999999999999999999999765432 2236789999999999999999 79999999999999
Q ss_pred EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|+++|++++.+++|..-|+++.... .+-.++.+++.|+++++||++......++.. ..
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-ky-------------------- 175 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KY-------------------- 175 (338)
T ss_pred ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccc-ce--------------------
Confidence 9999999999999999999998432 3336888899999999999997665554421 22
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1082)
.+.++.|...+..+++|+-|+.|++||++.+.....+.+|.. .|+.+..+++|.++.+-+.|.++++||.+.-..
T Consensus 176 -qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-- 250 (338)
T KOG0265|consen 176 -QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-- 250 (338)
T ss_pred -eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccCC--
Confidence 334445555555899999999999999999999999997766 899999999999999999999999999753300
Q ss_pred eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415 655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 734 (1082)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 734 (1082)
.. ..+.++.
T Consensus 251 --------------------------~~---------R~v~if~------------------------------------ 259 (338)
T KOG0265|consen 251 --------------------------SQ---------RCVKIFQ------------------------------------ 259 (338)
T ss_pred --------------------------CC---------ceEEEee------------------------------------
Confidence 00 0000100
Q ss_pred eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe
Q 001415 735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN 813 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd 813 (1082)
+.. . +.......++|+|+++.+.+|+ |..+++||
T Consensus 260 ---g~~---h---------------------------------------nfeknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 260 ---GHI---H---------------------------------------NFEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred ---cch---h---------------------------------------hhhhhcceeeccCCCCccccccccceEEEee
Confidence 000 0 0122234568899999998887 78899999
Q ss_pred cCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 814 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 814 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
..+...+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus 295 ~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 295 TTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 999999999999999999999999 899999999999998743
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-30 Score=282.36 Aligned_cols=449 Identities=15% Similarity=0.252 Sum_probs=312.0
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+..-+..|..++|.|...+++++-..|.|++||..-+..+. .+.+|.++|..++|.|.+. +++|||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 33456689999999999999999999999999999988777 7899999999999999999 899999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
.++.+++.++.||.+-|..+.||+.- .+|+++|.|.+|+||++.+..+...+++|.+.|.+..|.|...
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED--------- 148 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED--------- 148 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---------
Confidence 99999999999999999999998766 5999999999999999999999999999999888877776544
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcce---------------------------EEEEecCCCCCCcCeEEEcC
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~i~~~~~s~ 628 (1082)
.+++++-|.+|||||+..-+. +-..-..+|...|+.++|+|
T Consensus 149 ------------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 149 ------------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred ------------eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 799999999999999853211 11111223333566666666
Q ss_pred CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcc
Q 001415 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 708 (1082)
Q Consensus 629 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 708 (1082)
.-.++++|++|..|++|.+... +.|.+++ +
T Consensus 217 TlpliVSG~DDRqVKlWrmnet--------------------------------------------KaWEvDt------c 246 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET--------------------------------------------KAWEVDT------C 246 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc--------------------------------------------cceeehh------h
Confidence 6666666666666666654322 2233321 1
Q ss_pred ccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCC
Q 001415 709 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 788 (1082)
Q Consensus 709 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1082)
++|.+.|.++.|+|..+.+++.+.|+.|++||+..... +...- .....
T Consensus 247 -------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----------------------v~tfr---rendR 294 (1202)
T KOG0292|consen 247 -------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----------------------VQTFR---RENDR 294 (1202)
T ss_pred -------hcccCCcceEEecCccceeEecCCCccEEEEecccccc----------------------eeeee---ccCCe
Confidence 34999999999999999999999999999998763221 11110 14566
Q ss_pred ccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee--eeee
Q 001415 789 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKL 866 (1082)
Q Consensus 789 i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l 866 (1082)
...++.+|..+++|+|.|+.+.+|.++.-++. .+.+ ++.++.+- |..|+-+|+.+.+- +..+
T Consensus 295 FW~laahP~lNLfAAgHDsGm~VFkleRErpa------------~~v~--~n~LfYvk--d~~i~~~d~~t~~d~~v~~l 358 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGHDSGMIVFKLERERPA------------YAVN--GNGLFYVK--DRFIRSYDLRTQKDTAVASL 358 (1202)
T ss_pred EEEEEecCCcceeeeecCCceEEEEEcccCce------------EEEc--CCEEEEEc--cceEEeeeccccccceeEec
Confidence 78899999999999999988888887643332 3333 34444443 88999999988543 3444
Q ss_pred ccc---ccCEEEEEEeCCCCEEEEE-eC-CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ec
Q 001415 867 KGH---SKRITGLAFSHALNVLVSS-GA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 940 (1082)
Q Consensus 867 ~~h---~~~V~~l~~s~d~~~l~s~-s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d 940 (1082)
+.. ..++.++.++|....+..+ .. .+.-.++.+...............+ .+ ....|-..+++.+.. ++
T Consensus 359 r~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~-----tG-~~a~fvarNrfavl~k~~ 432 (1202)
T KOG0292|consen 359 RRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG-----TG-EGALFVARNRFAVLDKSN 432 (1202)
T ss_pred cCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC-----CC-CceEEEEecceEEEEecC
Confidence 433 3678999999976654444 33 3444455554421111000000000 11 122232233333332 24
Q ss_pred CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
..+.+-++.+... +.+.. ...+..|-+..+|.+|+.. ...|.+||+..++.+..+.
T Consensus 433 ~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 433 EQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred cceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe
Confidence 4455544433221 22221 1234455566666665543 5679999999999888776
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-30 Score=270.92 Aligned_cols=505 Identities=13% Similarity=0.162 Sum_probs=342.5
Q ss_pred CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1082)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~ 498 (1082)
..+|+++|||.+.+.||.+=.+|.|.||++..+=.... .+.++. ..|.+++|++.++ |.|.+.+|+|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 35899999999999999999999999999998643332 455654 5899999996665 89999999999999999
Q ss_pred CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccccee
Q 001415 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1082)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~ 578 (1082)
++.+..+....+.|++++.++.. ..++.|+.||.+..++............ ....+.+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l-------------------~rq~sRvL 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSL-------------------MRQKSRVL 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeec-------------------ccccceEE
Confidence 99999999999999999998766 5899999999766666554332221111 11123455
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC-----C-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----G-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~-~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
++.|+|++..+++|+.||.|++||..++..+...... . ...-|.++.|-.++ .|++|...|+|.+||...+ .
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-c
Confidence 5666666668999999999999999998876632211 1 11224555555444 5777888888888887666 3
Q ss_pred ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415 653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 732 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 732 (1082)
+.+.+.. |...|.+++..+++.
T Consensus 237 LiqS~~~----------------------------------------------------------h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 237 LIQSHSC----------------------------------------------------------HDADVLALAVADNED 258 (691)
T ss_pred hhhhhhh----------------------------------------------------------hhcceeEEEEcCCCC
Confidence 3222211 677788888888888
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEE
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISL 811 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~i 811 (1082)
++++++.|+.+..|........ |-.. .....|...+++++..++ .+++|+ |..+.+
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~-------------wv~~--------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSE-------------WVIN--------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eEEEccCCCceEEEEecCCccc-------------eeee--------ccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 8999999988877755432110 1111 011238899999999887 666665 566666
Q ss_pred EecCCCeeEEEECCCCCCeeE-EEEecCCCcEEEEEeCCCcEEEEeccccee---------eeeecccccCEEEEEEeCC
Q 001415 812 FNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKGHSKRITGLAFSHA 881 (1082)
Q Consensus 812 wd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~~---------~~~l~~h~~~V~~l~~s~d 881 (1082)
-.....+...........-.+ +...| .++|..--.+..+.+|.+.+... .+........|.+.+.|||
T Consensus 316 ~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPd 393 (691)
T KOG2048|consen 316 CSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPD 393 (691)
T ss_pred ccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCC
Confidence 544331111111100011111 23333 34555555577888888766511 1112223456999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E-ecCeEEEEEccCcc--eeeee
Q 001415 882 LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLE--CVKQW 957 (1082)
Q Consensus 882 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~-~d~~i~iwd~~~~~--~~~~~ 957 (1082)
|++++.+.-. .+++|.++.........+..... .......+.|+-|+..++. + ....+.+++..+.. .+..+
T Consensus 394 g~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~---~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 394 GNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPL---ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred CCEEEEeecc-ceEEEEeccCcceeEEEeccchh---hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence 9999987643 47899887733222222211111 1135678899988887776 4 56778888776543 33333
Q ss_pred ccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC
Q 001415 958 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1037 (1082)
Q Consensus 958 ~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d 1037 (1082)
...+-...|..+..||||.|||+.+.+|.|.+|++.+++...... . -....+++.|+|.+.+.|+.+..|
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-------r---ln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-------R---LNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-------c---cCcceeeeeccccccCcEEEEecC
Confidence 333346789999999999999999999999999999988765432 0 113456888997777889999999
Q ss_pred CcEEEEccCCCC
Q 001415 1038 GGVHVFEPLESE 1049 (1082)
Q Consensus 1038 g~v~vW~~~~~~ 1049 (1082)
+.|.-+|++...
T Consensus 540 nQv~efdi~~~~ 551 (691)
T KOG2048|consen 540 NQVFEFDIEARN 551 (691)
T ss_pred CeEEEEecchhh
Confidence 999999994443
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.7e-29 Score=265.03 Aligned_cols=500 Identities=14% Similarity=0.149 Sum_probs=358.9
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
...+|.|+|||.+.+. ||.+-.||.|.||++..+=.... .+..+....|.+++|+ +|..|.
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~-----------------vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEP-----------------VIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeE-----------------EEecCCCCceeeEEEc-cCCeEE
Confidence 3578999999999995 99999999999999987543321 1223446789999999 566777
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE--EeecCCcCeEE
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS 514 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~h~~~v~~ 514 (1082)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..+++..++... .+...+++|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 88899999999999988665 6777889999999999998 78999999988888888777654 34455689999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecC--------CCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
+.|+++. ..|++|+.||.|++||...+......+. ...-|.++.|-.++
T Consensus 160 lsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------------------- 216 (691)
T KOG2048|consen 160 LSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------------------- 216 (691)
T ss_pred EEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---------------------
Confidence 9987654 6799999999999999998776652211 11123444444443
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1082)
.+++|...|+|.+||...+.+++....+.. .|.+++..+++.++++++.|+.|.-|...+....
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------- 280 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------- 280 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------
Confidence 599999999999999999999999887765 6999999999999999999999988876655210
Q ss_pred cccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415 667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 746 (1082)
|-... ....|...+.+++..++ .+++++.|..+.+-
T Consensus 281 ------------------------------wv~~~------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 281 ------------------------------WVINS------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred ------------------------------eeeec------------cccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 11000 00127778888888877 78888989888764
Q ss_pred eccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCc-cEEEeecCCCeEEEeeCCeEEEEecCCCe-------
Q 001415 747 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV-PCFALSKNDSYVMSASGGKISLFNMMTFK------- 818 (1082)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~s~dg~~l~~~sdg~i~iwd~~~~~------- 818 (1082)
...... ..+-. .. ...+- ..+...|..++++.-....+.+|.+.+..
T Consensus 317 ~s~~~~--------------~~~h~---~~--------~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~ 371 (691)
T KOG2048|consen 317 SSREFK--------------NMDHR---QK--------NLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNY 371 (691)
T ss_pred cccccC--------------chhhh---cc--------ccccccceeecCccceEEEEeccccccceeccCcccccccCh
Confidence 322100 00000 00 00001 11333455555555556778888876541
Q ss_pred --eEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee-----eeecccccCEEEEEEeCCCCEEEEEe-C
Q 001415 819 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-----SKLKGHSKRITGLAFSHALNVLVSSG-A 890 (1082)
Q Consensus 819 --~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~s~d~~~l~s~s-~ 890 (1082)
..+........|.+.+.|| +|++||.+. -..++||.++....+ .......-.+..+.|+-|+..++.++ .
T Consensus 372 ~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~ 449 (691)
T KOG2048|consen 372 IHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN 449 (691)
T ss_pred hhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc
Confidence 1222233455699999999 999999876 346888888752222 11223334677889999998888888 6
Q ss_pred CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEE
Q 001415 891 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHA 969 (1082)
Q Consensus 891 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l 969 (1082)
+..+.+.++++.......-.... .....|..++.||||.++|+ +..+.|.+|++++++...... .-...|+.+
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~ 523 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAA 523 (691)
T ss_pred cceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeee
Confidence 67788888887543322222211 23367999999999999999 788999999999887654432 114789999
Q ss_pred EEcC-CCceEEEeecCCcEEEEecCCce
Q 001415 970 TFSC-DSQLVYACFLDATVCVFSAANLK 996 (1082)
Q Consensus 970 ~~s~-dg~~l~t~s~dg~v~vwd~~~~~ 996 (1082)
+|+| +...|+.+..|+.|.=||++..+
T Consensus 524 ~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred eccccccCcEEEEecCCeEEEEecchhh
Confidence 9995 56678889999999999995544
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=265.86 Aligned_cols=287 Identities=16% Similarity=0.304 Sum_probs=244.9
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
++.+|.+.|.|+++.|-..++++|+.|++++|||+.+|+... ++.||...|..+++|+--. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 588999999999999999999999999999999999998655 8999999999999999888 89999999999999
Q ss_pred EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|++..+.++.+.||-..|.++..+|.-+ .
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTld--v------------------------------------------------- 249 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLD--V------------------------------------------------- 249 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccce--e-------------------------------------------------
Confidence 9999999999999999999999887653 3
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1082)
+++|+.|.++++||+++...+..+.+|.. +|.++.+.|-...+++|+.|++|++||+..++...
T Consensus 250 --------------l~t~grDst~RvWDiRtr~~V~~l~GH~~--~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 250 --------------LVTGGRDSTIRVWDIRTRASVHVLSGHTN--PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred --------------EEecCCcceEEEeeecccceEEEecCCCC--cceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 55555666666777777777777776655 78899999877789999999999999987762110
Q ss_pred eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415 655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 734 (1082)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 734 (1082)
.+
T Consensus 314 -tl----------------------------------------------------------------------------- 315 (460)
T KOG0285|consen 314 -TL----------------------------------------------------------------------------- 315 (460)
T ss_pred -ee-----------------------------------------------------------------------------
Confidence 00
Q ss_pred eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEec
Q 001415 735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM 814 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~ 814 (1082)
..|...+.+++.+|....+|+++.+.|+-|++
T Consensus 316 ------------------------------------------------t~hkksvral~lhP~e~~fASas~dnik~w~~ 347 (460)
T KOG0285|consen 316 ------------------------------------------------THHKKSVRALCLHPKENLFASASPDNIKQWKL 347 (460)
T ss_pred ------------------------------------------------ecccceeeEEecCCchhhhhccCCccceeccC
Confidence 01677788888999988999999899999999
Q ss_pred CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec--------ccccCEEEEEEeCCCCEEE
Q 001415 815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--------GHSKRITGLAFSHALNVLV 886 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--------~h~~~V~~l~~s~d~~~l~ 886 (1082)
..+..+..+.+|..-+.+++... |+ ++++|+++|.+..||.++|-..+.+. .....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~iintl~~ns-D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNAIINTLSVNS-DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccceeeeeeecc-Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999999999999999998 55 78889999999999999885544432 1235689999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 001415 887 SSGADSQLCVWSSDG 901 (1082)
Q Consensus 887 s~s~Dg~i~vwd~~~ 901 (1082)
+|..|.+|++|.-+.
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997655
No 48
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.7e-30 Score=263.26 Aligned_cols=426 Identities=18% Similarity=0.243 Sum_probs=307.1
Q ss_pred CCCCceEEEEecC--CCeEEEE-EcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415 357 QGSSPMSMDFHPV--QQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1082)
Q Consensus 357 h~~~v~~~~~spd--g~~llas-gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1082)
-+..|+|++||+- |..|++. -+.+..+.|||+..+..+.. .+..+..|...+|.|.+.
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~ 213 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDP 213 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCC
Confidence 5678999999984 4444443 23356689999988776653 344566889999999666
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCe
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 512 (1082)
-|......+.+..|+++++...+....++.++ ..|.|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.|
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGV 290 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCce
Confidence 66655567889999999998877666666654 5799999999999 8999999999999998888777777999999
Q ss_pred EEEeeeecCCceEEEEecCCCcEEEEecCCCCceeee--cCCCCceEEEEEc-------------------cCCCeeeec
Q 001415 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYS-------------------ADGTRTYQG 571 (1082)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s-------------------~d~~~~~~~ 571 (1082)
.+++...++ .|++|+.|+.|..|| +..+..... ....+.++.++-. ..-..+..+
T Consensus 291 ~~L~~lr~G---tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g 366 (626)
T KOG2106|consen 291 FSLCMLRDG---TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG 366 (626)
T ss_pred EEEEEecCc---cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe
Confidence 999986544 577799999999998 333333322 2222334333211 111133444
Q ss_pred ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCc
Q 001415 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1082)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~ 651 (1082)
|.+ ....++.+|+.+++++++.|+.+++|+ ..+++.+..... ++.++.|+|.| .++.|+..|...+.|.++.
T Consensus 367 h~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~- 438 (626)
T KOG2106|consen 367 HGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATGRWFVLDTETQ- 438 (626)
T ss_pred ccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccceEEEEecccc-
Confidence 444 677788888888888888888888888 445544443322 46788888888 8888888888888887653
Q ss_pred cceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCC
Q 001415 652 RLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 731 (1082)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 731 (1082)
.++.... ...+++.+.|+|+|
T Consensus 439 ~lv~~~~-----------------------------------------------------------d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 439 DLVTIHT-----------------------------------------------------------DNEQLSVVRYSPDG 459 (626)
T ss_pred eeEEEEe-----------------------------------------------------------cCCceEEEEEcCCC
Confidence 2211110 34567888888999
Q ss_pred ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEE
Q 001415 732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 810 (1082)
Q Consensus 732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~ 810 (1082)
.+++.++.|+.|++|.++... ......-. .+..+|+.+.||+|++++.+-+ |-.|.
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g---------------------~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANG---------------------RKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred CEEEEecCCCeEEEEEECCCC---------------------cEEEEeee--ecCceeEEeeecCCCceEEeccCceEEE
Confidence 888888888888888765322 11111111 1458899999999999999987 56799
Q ss_pred EEecCCCeeEEEE------------------CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce---eeeeeccc
Q 001415 811 LFNMMTFKTMATF------------------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGH 869 (1082)
Q Consensus 811 iwd~~~~~~~~~~------------------~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h 869 (1082)
.|.....+..... ..+...+..++-+. +.+++|+|.+.|.|++|...--+ ...+..+|
T Consensus 517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh 595 (626)
T KOG2106|consen 517 YWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH 595 (626)
T ss_pred EEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccc
Confidence 9954432221111 12334466677777 88899999999999999876433 34567799
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001415 870 SKRITGLAFSHALNVLVSSGADSQLCVWSS 899 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 899 (1082)
++-|++++|..+...|++.+.|..|..|++
T Consensus 596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999999889998889999999986
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=277.16 Aligned_cols=284 Identities=19% Similarity=0.305 Sum_probs=242.1
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
-+..|..+.|.|+|++ |++|+..|.+.+|+..+- +|. .++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4678999999999997 899999999999996321 111 14789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeecc-ccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h-~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 515 (1082)
+|+.+|.|++|+..-.... .+.+| ...|++++|||++. .++++++||+|+|||....+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999998754322 34454 48999999999888 69999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
.|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++. +|++++.|
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt~skD 285 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLTGSKD 285 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEEccCC
Confidence 999877 5899999999999999999999999998888888877777665 89999999
Q ss_pred CeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG 674 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1082)
..++++|+++.+.+..+++|.. .+.++.|+| ...++.+|+.||.|..|.+.....+.
T Consensus 286 ~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~-------------------- 343 (464)
T KOG0284|consen 286 QSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG-------------------- 343 (464)
T ss_pred ceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccccccc--------------------
Confidence 9999999998888888887765 799999999 67788999999999999875221110
Q ss_pred CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeecc
Q 001415 675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 749 (1082)
Q Consensus 675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~ 749 (1082)
.....|...|.+++|+|-|..|++++.|.++++|.-.
T Consensus 344 --------------------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 344 --------------------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --------------------------------------CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 0112278889999999999999999999999999654
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=299.68 Aligned_cols=288 Identities=20% Similarity=0.349 Sum_probs=238.7
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc--eeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
|...|.|+.|||||++ +++++.|+.+++|+..+++ .+. .+.+|...|.+++|||||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4899999999999996 9999999999999997766 332 25799999999999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1082)
Q Consensus 435 las~~~d~~v~iwd~-~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 513 (1082)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4446555 7889999999999999997 899999999999999999999999999999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCce--eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
+++|.+ ++.+|++++.|+.|++||+.++... ..+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 999865 4579999999999999999987732 222222221 0 3444555555569999
Q ss_pred EeCCCeEEEEECCCcceEEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccc-cccccccc
Q 001415 592 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSE 669 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~ 669 (1082)
++.|+.+++||+..+.....+..+... ..+.+..+++.+.++++|+.|+.|.+|+..++ .....+.+|. ..+. ..
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~--~~ 428 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVS--DL 428 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCcee--cc
Confidence 999999999999999999999877663 23445556789999999999999999999986 6777777773 3322 44
Q ss_pred ccCCCCccccCCCCceeeec--cCCceeEEEec
Q 001415 670 NSKNGDVRSLADVKPRITEE--SNDKSKVWKLT 700 (1082)
Q Consensus 670 ~~~~~~~~~s~~~~~l~~~~--~d~~i~iw~~~ 700 (1082)
.+ .+....+++++ .|+.+++|...
T Consensus 429 ~~-------~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 429 SS-------HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cc-------CCCcCeeeecCcCCCceEEEecCC
Confidence 44 78888888887 68899999754
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=244.64 Aligned_cols=291 Identities=16% Similarity=0.232 Sum_probs=233.7
Q ss_pred cccceeEEEEccC-CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415 718 RATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 796 (1082)
Q Consensus 718 ~~~~i~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 796 (1082)
|.+++..++|+|- |..|++++.|..|++|+..... -| .+. .....+|...|++++|+|
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~-----~ck--~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SW-----TCK--TVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cE-----EEE--EeccccchheeeeeeecC
Confidence 8889999999999 8899999999999999765210 01 011 112235999999999999
Q ss_pred CCCeEEEee-CCeEEEEecC--CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc---eeeeeecccc
Q 001415 797 NDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHS 870 (1082)
Q Consensus 797 dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~ 870 (1082)
.|++||+++ |.++.||.-. ..+++.++.+|..+|.+++|++ +|.+||+++.|..|-||.+..+ ++...|..|+
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 999999998 8999999876 4578999999999999999999 9999999999999999999854 6788999999
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEcc
Q 001415 871 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 949 (1082)
Q Consensus 871 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~ 949 (1082)
..|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+...+|. ..|-+++|++.|..|++ +.|+.++||...
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99999999999999999999999999988731 2356777788887 57899999999999888 578999999864
Q ss_pred CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC
Q 001415 950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1029 (1082)
Q Consensus 950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~ 1029 (1082)
+ .+ ...|+..+..+.|. ...|++++.|+.|+||.-..+-.-..+.........| ..-+-++.|.|...+
T Consensus 226 ~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH---e~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 226 T-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH---EVDVNSVQWNPKVSN 294 (312)
T ss_pred c-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc---ccccceEEEcCCCCC
Confidence 1 12 23578899999997 5689999999999999876431111111111111123 233449999996678
Q ss_pred eEEEEecCCcEEEEccC
Q 001415 1030 EFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus 1030 ~l~s~~~dg~v~vW~~~ 1046 (1082)
+|++|+.||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999875
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-31 Score=242.68 Aligned_cols=283 Identities=17% Similarity=0.268 Sum_probs=236.4
Q ss_pred cccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415 413 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 413 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~ 492 (1082)
..++..|.++|.++.|+-||+|.++++.|.+|++||...|..++ +..+|...|..++.+.|+. -+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 33588999999999999999999999999999999999999887 8999999999999999998 599999999999
Q ss_pred EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC--ceeeecCCCCceEEEEEccCCCeeee
Q 001415 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1082)
Q Consensus 493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~~~~ 570 (1082)
+||+.+|+.++.+.+|.+.|+.+.|+... ..+++|+.|..+++||.++.. +.+.+......|.++..+.
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~------- 155 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE------- 155 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-------
Confidence 99999999999999999999999986544 799999999999999998643 3344444445555554432
Q ss_pred cccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
..+++|+.||+++.||++.|++...+-++ +|+++.|++|++..++++.|+++++.|-.+|
T Consensus 156 ----------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 156 ----------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ----------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh
Confidence 26899999999999999999887766543 7999999999999999999999999999999
Q ss_pred ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccc-eeEEEEcc
Q 001415 651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK-ISRLIFTN 729 (1082)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~ 729 (1082)
++++...+|.........++ ......+++|+.||.+.+||+.+......... +... +.++.+.|
T Consensus 216 -klL~sYkGhkn~eykldc~l-------~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-------~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 216 -KLLKSYKGHKNMEYKLDCCL-------NQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-------VSTVIVTDLSCHP 280 (307)
T ss_pred -HHHHHhcccccceeeeeeee-------cccceeEEeccCCceEEEEEeccceeeeeecc-------CCceeEEeeeccc
Confidence 78888999887665433333 77778899999999999999987544433332 3333 78999999
Q ss_pred CCceeeecccCCeEE
Q 001415 730 SGNAILALASNAIHL 744 (1082)
Q Consensus 730 ~~~~l~~~~~d~~i~ 744 (1082)
....+++++..+.+.
T Consensus 281 ~~~~f~~A~~~~~~~ 295 (307)
T KOG0316|consen 281 TMDDFITATGHGDLF 295 (307)
T ss_pred CccceeEecCCceec
Confidence 988788777665443
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=7.4e-32 Score=274.34 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=247.2
Q ss_pred cccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccC-CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~ 492 (1082)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.||..+|.+++|+++|. -++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5889999999999999 999999999999999999986 66666 8999999999999999999 699999999999
Q ss_pred EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1082)
Q Consensus 493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 572 (1082)
+||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.+..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999987 45677899999877 37899999999999999999998888888888888888887776
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
++++.++|+.++||+....-.+....... .....++..+|++++++.-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 89999999999999998887766543322 22578999999999999999999999887543211
Q ss_pred c--eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415 653 L--LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 730 (1082)
Q Consensus 653 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 730 (1082)
. .+.+++|
T Consensus 420 ~nkkK~feGh---------------------------------------------------------------------- 429 (503)
T KOG0282|consen 420 LNKKKRFEGH---------------------------------------------------------------------- 429 (503)
T ss_pred cCHhhhhcce----------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeE
Q 001415 731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 809 (1082)
Q Consensus 731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i 809 (1082)
.-.+.-..+.|||||.+|++|+ +|.+
T Consensus 430 -----------------------------------------------------~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 430 -----------------------------------------------------SVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred -----------------------------------------------------eccCceeeEEEcCCCCeEEeecCCccE
Confidence 0123345688999999999997 7999
Q ss_pred EEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 810 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 810 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
.+||..+.+.+..+..|...+..+.|+|.....+|+++.||.|++|+
T Consensus 457 ~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999998888999999999999996
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.5e-30 Score=294.36 Aligned_cols=289 Identities=27% Similarity=0.413 Sum_probs=244.9
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
+...|.++.|+++|+.+++++.++.+++|+...... .....+ .+|...|.+++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLREL--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccc--cccccceeeeEECCC
Confidence 467889999999999999999999999997632110 001111 249999999999999
Q ss_pred CCeEEEee-CCeEEEEec-CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE
Q 001415 798 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 875 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 875 (1082)
++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999998 689999999 56689999999999999999999 6799999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCccee
Q 001415 876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 954 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~ 954 (1082)
++|++|+.+|++++.|+.|++||+.++... +.....++.... .+..+.|+|++++++++ .|+.+++||+..+.++
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 344555555433 68999999999999995 6779999999999999
Q ss_pred eeeccCCCCc---ceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeE
Q 001415 955 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1031 (1082)
Q Consensus 955 ~~~~~~~h~~---~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l 1031 (1082)
..+. +|.. .+.+..++++|+++++|+.|+.|++|++.++..++.+. +|.. -....+.++|. .+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~--~~~~~~~~~~~-~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSK--AAVSDLSSHPT-ENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCC--CceeccccCCC-cCee
Confidence 9888 4433 56666778999999999999999999999999998888 5531 23347888884 6788
Q ss_pred EEEe--cCCcEEEEccC
Q 001415 1032 ALGL--SDGGVHVFEPL 1046 (1082)
Q Consensus 1032 ~s~~--~dg~v~vW~~~ 1046 (1082)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 8887 79999999764
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=2.4e-32 Score=264.88 Aligned_cols=273 Identities=20% Similarity=0.328 Sum_probs=228.9
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
..+.|.|+.+..+ .+++|..|++|.|||.++..++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4578999998643 38999999999999999888776 48999999999998 567999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce---eEEeecCCcCeE
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 513 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~ 513 (1082)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.++.|||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 78899999999999843 799999999999999987653 357789999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
.+.|. . +++++++.|.+|++|+..+.+...++.+|...+.++.+. ++.+++|+
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS 377 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence 99874 2 599999999999999999999998888888877766542 34788999
Q ss_pred CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc--------eeeccccccccc
Q 001415 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL--------LRTFENLAYDAS 665 (1082)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~ 665 (1082)
.|.+|++||+..|.++..+++|.. -|.++.|. .+.+++|..||.|++||+..+... +..+..|...+.
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 999999999999999999998876 58899985 678999999999999999877433 222233333332
Q ss_pred ccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415 666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~ 702 (1082)
.+ .-|.-.+++++.|.+|.+||....
T Consensus 454 --rL---------QFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 454 --RL---------QFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred --EE---------eecceEEEeccCCCeEEEEEcCCC
Confidence 22 336677889999999999998764
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=240.40 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=230.8
Q ss_pred Ccceeeec-CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEE
Q 001415 348 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1082)
Q Consensus 348 ~~~~~~~~-~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1082)
|.+-.+.+ .|+++|.++.|+-||+| .++++.|.+|++|+...|.++++ +.+|..+|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 34333444 49999999999999996 77888899999999999999985 88999999999
Q ss_pred EEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC--CceeEE
Q 001415 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYI 504 (1082)
Q Consensus 427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~--~~~~~~ 504 (1082)
+.+.|...+|+|+.|..|.+||+.+|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ -++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999887 7999999999999999988 899999999999999876 467888
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~ 584 (1082)
+......|.++.+.. ..|++|+.||+++.||++.+.....+ -++ ++++++|++
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~---------------------pit~vs~s~ 193 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGH---------------------PITSVSFSK 193 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCC---------------------cceeEEecC
Confidence 888888999987643 57999999999999999865433222 233 444555555
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccc
Q 001415 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 664 (1082)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1082)
+++..++++.|+++++.|-.+|+++..+.+|.....-..++++.....+++|++||.+.+||+.+. ..+..+..+....
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVVSTVI 272 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc-eeeeeeccCCcee
Confidence 555889999999999999999999999999887665567888888899999999999999999887 4444444443332
Q ss_pred cccccccCCCCccccCCCCceeeecc
Q 001415 665 SRTSENSKNGDVRSLADVKPRITEES 690 (1082)
Q Consensus 665 ~~~~~~~~~~~~~~s~~~~~l~~~~~ 690 (1082)
.. .+.+ .|.-..++++..
T Consensus 273 v~-dl~~-------hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 273 VT-DLSC-------HPTMDDFITATG 290 (307)
T ss_pred EE-eeec-------ccCccceeEecC
Confidence 11 3344 555555655544
No 57
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=2.2e-31 Score=264.55 Aligned_cols=285 Identities=16% Similarity=0.248 Sum_probs=240.4
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
-...|..+.|.|+|+.|++++..|.+.+|+...-.+ ..-.+.|...|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------------EtilQaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------------ETILQAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------------------------HHHhhhhcccceeEEEccC
Confidence 345788999999999999999999999997532111 1112349999999999999
Q ss_pred CCeEEEee-CCeEEEEecCCCeeEEEECCC-CCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE
Q 001415 798 DSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 875 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 875 (1082)
|.++++|+ +|.|++|+..-. .+..+..| ...|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999998 589999998653 33444444 48899999999 6678889999999999999998888899999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCccee
Q 001415 876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 954 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~ 954 (1082)
++|+|...+||++|.|..|++||.+++. ++....+|. ..|..+.|+|++.+|++ +.|..++++|+++.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999965 566677777 67899999999999999 78999999999988888
Q ss_pred eeeccCCCCcceeEEEEcCC-CceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415 955 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus 955 ~~~~~~~h~~~i~~l~~s~d-g~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
..+. +|...|++++|+|- ..+|.+|+.||.|..|.+...+.+..+. .+|... |+ +++|+| -|.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AHd~~-iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAHDGE-IW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------cccccc-ee--eeeccc-cceeEee
Confidence 7777 89999999999995 4578889999999999999666665443 344233 44 899999 5999999
Q ss_pred EecCCcEEEEccCCCC
Q 001415 1034 GLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1034 ~~~dg~v~vW~~~~~~ 1049 (1082)
|+.|.++++|.-....
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999876555
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.9e-31 Score=244.19 Aligned_cols=287 Identities=17% Similarity=0.305 Sum_probs=224.9
Q ss_pred cccCCCCceeEEEEec---CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcE
Q 001415 415 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i 491 (1082)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||.+.|++.....+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 3679999999999997 89999999999998888888988777 8999999999999988877 68999999999
Q ss_pred EEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeee
Q 001415 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ 570 (1082)
Q Consensus 492 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~ 570 (1082)
+|||.-+|..+++|. |...|.+++|+.+. ++|++|+.+..+|++|++..+... .+..|.+.|..+.|....+
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~ds--~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~---- 156 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDS--NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK---- 156 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecccc--hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc----
Confidence 999999999999998 89999999987554 799999999999999998654332 3334444333333322221
Q ss_pred cccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
.+++...|++||+||.+++..++++..
T Consensus 157 -----------------~iLSSadd~tVRLWD~rTgt~v~sL~~------------------------------------ 183 (334)
T KOG0278|consen 157 -----------------CILSSADDKTVRLWDHRTGTEVQSLEF------------------------------------ 183 (334)
T ss_pred -----------------eEEeeccCCceEEEEeccCcEEEEEec------------------------------------
Confidence 344444444444444444443333322
Q ss_pred ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415 651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 730 (1082)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 730 (1082)
T Consensus 184 -------------------------------------------------------------------------------- 183 (334)
T KOG0278|consen 184 -------------------------------------------------------------------------------- 183 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEE
Q 001415 731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKIS 810 (1082)
Q Consensus 731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~ 810 (1082)
...|+++.+++||++|.++..+.|.
T Consensus 184 -------------------------------------------------------~s~VtSlEvs~dG~ilTia~gssV~ 208 (334)
T KOG0278|consen 184 -------------------------------------------------------NSPVTSLEVSQDGRILTIAYGSSVK 208 (334)
T ss_pred -------------------------------------------------------CCCCcceeeccCCCEEEEecCceeE
Confidence 3344555666666666666666777
Q ss_pred EEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee-cccccCEEEEEEeCCCCEEEEEe
Q 001415 811 LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 811 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s 889 (1082)
+||..+...++.+. -+..|.+..++| +...+++|++|..++.||..+|+.+..+ ++|-++|.|+.|+|||...++||
T Consensus 209 Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred Eeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 77777777777665 344688999999 7789999999999999999999998885 99999999999999999999999
Q ss_pred CCCcEEEEEcCCcc
Q 001415 890 ADSQLCVWSSDGWE 903 (1082)
Q Consensus 890 ~Dg~i~vwd~~~~~ 903 (1082)
.||+|++|....++
T Consensus 287 EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEEEEecCCC
Confidence 99999999987754
No 59
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=6.8e-29 Score=258.94 Aligned_cols=579 Identities=16% Similarity=0.206 Sum_probs=337.7
Q ss_pred cceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1082)
Q Consensus 349 ~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1082)
+.+-.+-.|.+.|+.+.|||-...|||++|.|..|+||.+..|-.... .-....+.+..-.|.|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 344455569999999999998888999999999999999975432210 0111135555678999999
Q ss_pred ecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-CceeEEeec
Q 001415 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG 507 (1082)
Q Consensus 429 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~ 507 (1082)
.|...-|...+..|.++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+|||.+. ++.++...+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9966555556677999999999998666 8999999999999999999 899999999999999875 678888888
Q ss_pred CCcCe-EEEeeeecCCceEEEEecCC----CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415 508 HEAPV-YSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 508 h~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
|.+.- ..+.|. ++-..|++.+.+ ..|++||.+..... +..+.+... ..+..--|
T Consensus 212 H~~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p---------~~tleld~s----------tGvLiPl~ 270 (1012)
T KOG1445|consen 212 HGGMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAP---------VHTLELDSS----------TGVLIPLY 270 (1012)
T ss_pred cccchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCc---------ceeEEeecc----------cceEeeee
Confidence 87642 223443 333467777655 46899998753322 112211110 12222345
Q ss_pred cCCCCEEE-EEeCCCeEEEEECCCcceEEE--Ee--cCCC---------------CCCcCe------------E------
Q 001415 583 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTS--ID--ADGG---------------LPASPR------------I------ 624 (1082)
Q Consensus 583 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~--~~--~~~~---------------~~~i~~------------~------ 624 (1082)
+||.+.++ +|-.+..|..+.+...+.... ++ .... ...|.. .
T Consensus 271 DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRk 350 (1012)
T KOG1445|consen 271 DPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRK 350 (1012)
T ss_pred cCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchh
Confidence 55555444 444677787777755432110 00 0000 000000 0
Q ss_pred ---EEcCC--------------CCEEEEEECCCcEEEEEecCCccc--------------------eeecc------ccc
Q 001415 625 ---RFNKD--------------GCLLAVSTNDNGIKILATSDGIRL--------------------LRTFE------NLA 661 (1082)
Q Consensus 625 ---~~s~d--------------g~~l~~~~~dg~i~iwd~~~~~~~--------------------~~~~~------~~~ 661 (1082)
.|+.| |.++. +.+..+.-..+.-..+. ...+. .+.
T Consensus 351 syrdFH~DLfPeT~G~~p~~~ageWln--G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~ 428 (1012)
T KOG1445|consen 351 SYRDFHSDLFPETRGAEPGCTAGEWLN--GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMS 428 (1012)
T ss_pred hhhhhhhhhCccccCCccCcCccceec--CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccc
Confidence 11111 00000 00000000000000000 00000 000
Q ss_pred c--------cc-cc-ccc-------------------------------ccCCCCccccCCCCcee---e-eccC--Cce
Q 001415 662 Y--------DA-SR-TSE-------------------------------NSKNGDVRSLADVKPRI---T-EESN--DKS 694 (1082)
Q Consensus 662 ~--------~~-~~-~~~-------------------------------~~~~~~~~~s~~~~~l~---~-~~~d--~~i 694 (1082)
. +. .. .++ .+.......++....++ + --.| .+.
T Consensus 429 n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~ 508 (1012)
T KOG1445|consen 429 NNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTP 508 (1012)
T ss_pred cccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccc
Confidence 0 00 00 000 00000000000000000 0 0000 000
Q ss_pred eEEEe------c---------------------cc-------CCCCccccccccCccccc-ce------------eEEEE
Q 001415 695 KVWKL------T---------------------EL-------SEPNQCRSLRLPENLRAT-KI------------SRLIF 727 (1082)
Q Consensus 695 ~iw~~------~---------------------~~-------~~~~~~~~~~~~~~~~~~-~i------------~~~~~ 727 (1082)
.+... . .. ....+++...-. .+|.. .| .+-.|
T Consensus 509 s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt-~ghks~hi~NLrnln~~~PgEsnGf 587 (1012)
T KOG1445|consen 509 SVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGT-QGHKSAHISNLRNLNTRLPGESNGF 587 (1012)
T ss_pred cccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCc-cccchhhhhhhhcccccCCCccCce
Confidence 00000 0 00 000000000000 00110 01 11123
Q ss_pred ccCCceee--ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec-CCCeEEEe
Q 001415 728 TNSGNAIL--ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSA 804 (1082)
Q Consensus 728 s~~~~~l~--~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~l~~~ 804 (1082)
+.+..+++ ..+..|.|-||++.....-|++-... ......|+.+.|.| |...||++
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~---------------------l~Ngt~vtDl~WdPFD~~rLAVa 646 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG---------------------LFNGTLVTDLHWDPFDDERLAVA 646 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccc---------------------cccCceeeecccCCCChHHeeec
Confidence 33333333 34567899999987655555443321 12567788999998 66678877
Q ss_pred e-CCeEEEEecCCC-------eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415 805 S-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 876 (1082)
Q Consensus 805 s-dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 876 (1082)
+ ||.|++|.+..+ .+...+..|...|+++.|+|--..+||+++.|-+|++||+.+++....+.+|++.|.++
T Consensus 647 ~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~ 726 (1012)
T KOG1445|consen 647 TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGI 726 (1012)
T ss_pred ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEE
Confidence 7 599999998754 34456788999999999999777899999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Ee----cCeEEEEEccCc
Q 001415 877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKL 951 (1082)
Q Consensus 877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~----d~~i~iwd~~~~ 951 (1082)
+|||||+.+|+.+.||+|+||+..+++. ...++..+....-..|.|.-||+++++ +. +++|.+||..+.
T Consensus 727 AWSpdGr~~AtVcKDg~~rVy~Prs~e~------pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 727 AWSPDGRRIATVCKDGTLRVYEPRSREQ------PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EECCCCcceeeeecCceEEEeCCCCCCC------ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 9999999999999999999999988543 222333222244568899999999988 44 467999998765
Q ss_pred ce--eeeeccCCCCcceeEEEEcCCCc-eEEEeecCCcEEEEecCCcee
Q 001415 952 EC--VKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKL 997 (1082)
Q Consensus 952 ~~--~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s~dg~v~vwd~~~~~~ 997 (1082)
.. +.+...+. ...+.--.+.+|.. ++++|-.|..|.+|.+.-.+.
T Consensus 801 ~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 801 DLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 42 22211111 11111223455654 567777899999999865554
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.3e-31 Score=255.59 Aligned_cols=277 Identities=17% Similarity=0.300 Sum_probs=227.9
Q ss_pred CCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1082)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~ 498 (1082)
....|+|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3458999987 67789999999999999999988777 789999999999995 44 899999999999999999
Q ss_pred CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCce---eeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|..+.
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd--------------- 327 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD--------------- 327 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec---------------
Confidence 999999999999999999852 48999999999999999875532 23344444444444
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
|+. +++++++.|.+|++|++.+++++.++.+|.. .|.|+.+ .|+++++|+.|.+|++||+..| .+++
T Consensus 328 ------fd~--kyIVsASgDRTikvW~~st~efvRtl~gHkR--GIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLR 394 (499)
T KOG0281|consen 328 ------FDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLR 394 (499)
T ss_pred ------ccc--ceEEEecCCceEEEEeccceeeehhhhcccc--cceehhc--cCeEEEecCCCceEEEEecccc-HHHH
Confidence 333 3899999999999999999999999987765 5656555 5899999999999999999999 8999
Q ss_pred ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcc----ccccccCcccccceeEEEEccCC
Q 001415 656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC----RSLRLPENLRATKISRLIFTNSG 731 (1082)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~ 731 (1082)
.+++|..-+. ++.| |.+.+++|+.||+|++||+.....+... -...+. .|.+.|..+.|. .
T Consensus 395 vLeGHEeLvR--ciRF---------d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~ 459 (499)
T KOG0281|consen 395 VLEGHEELVR--CIRF---------DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--E 459 (499)
T ss_pred HHhchHHhhh--heee---------cCceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--c
Confidence 9999988776 6666 7889999999999999999876544221 111222 278889888885 4
Q ss_pred ceeeecccCCeEEEeecccc
Q 001415 732 NAILALASNAIHLLWKWQRT 751 (1082)
Q Consensus 732 ~~l~~~~~d~~i~iw~~~~~ 751 (1082)
.++++++.|.+|.+||+...
T Consensus 460 fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 460 FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eEEEeccCCCeEEEEEcCCC
Confidence 56999999999999998643
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=264.03 Aligned_cols=284 Identities=19% Similarity=0.257 Sum_probs=239.0
Q ss_pred ccccceeEEEEcc-CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415 717 LRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 795 (1082)
Q Consensus 717 ~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 795 (1082)
+|...|+++.|.| .+..+++++.|+.|++|++- + .+.+++.. .+|..+|..++|+
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrtf---~gH~k~Vrd~~~s 267 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRTF---KGHRKPVRDASFN 267 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehhh---hcchhhhhhhhcc
Confidence 4999999999999 88999999999999999753 3 33444432 2499999999999
Q ss_pred cCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415 796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 874 (1082)
Q Consensus 796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 874 (1082)
++|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.+++...|-+.|.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 9999999888 8999999999999999997 4557899999996668999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcce
Q 001415 875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC 953 (1082)
Q Consensus 875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~ 953 (1082)
.+.|-++|++++++++|++++||+....-... ....... ....++..+|++.++++ +.|+.|.+|.+...-.
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhh-----ccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 99999999999999999999999998854322 2222222 33578999999999999 8999999998643221
Q ss_pred ---eeeeccCCC--CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCC
Q 001415 954 ---VKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1028 (1082)
Q Consensus 954 ---~~~~~~~~h--~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~ 1028 (1082)
...+. +| .+--..+.|||||++|++|+.||.+.+||..+-++++.+. .| .-..+.+.|+|...
T Consensus 420 ~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah---~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 420 LNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AH---DQPCIGVDWHPVEP 487 (503)
T ss_pred cCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cC---CcceEEEEecCCCc
Confidence 22233 55 4456778999999999999999999999999999999888 33 23356899999988
Q ss_pred CeEEEEecCCcEEEEc
Q 001415 1029 NEFALGLSDGGVHVFE 1044 (1082)
Q Consensus 1029 ~~l~s~~~dg~v~vW~ 1044 (1082)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 9999999999999996
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-28 Score=268.29 Aligned_cols=284 Identities=25% Similarity=0.433 Sum_probs=236.2
Q ss_pred cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
.+|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++
T Consensus 6 ~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 6 KGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTY 65 (289)
T ss_pred cccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCE
Confidence 36999999999999999 588899999999999988765442 6678889999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 514 (1082)
|++++.+|.|++|++.+++.+. .+..|...|.++.|++++. ++++++.|+.|++||+.+++....+..|...+.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 9999999999999999876555 5778999999999999977 7888888999999999999999999999999999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1082)
++|++. +.++++++.|+.|++||+........+..+...+.++.|++++ +.+++++.
T Consensus 141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~ 197 (289)
T cd00200 141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSS 197 (289)
T ss_pred EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecC
Confidence 999875 4688888889999999998766666555555555555555554 47888888
Q ss_pred CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG 674 (1082)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1082)
++.|++||+.+++.+..+..+.. .+.+++|+|++.++++++.++.+++|+..++ .....+..
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~--------------- 259 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSG--------------- 259 (289)
T ss_pred CCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccc---------------
Confidence 99999999999888887765543 6899999999989888888999999998764 22221111
Q ss_pred CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415 675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 747 (1082)
Q Consensus 675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~ 747 (1082)
+...|.++.|++++..+++++.|+.+++|+
T Consensus 260 -------------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 -------------------------------------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------------------------------------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 555788888999888888888899888884
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.2e-28 Score=265.76 Aligned_cols=284 Identities=27% Similarity=0.435 Sum_probs=238.9
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+|+++ ++++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 67899999999999999999999999999999999887544 6778999999999999997 799999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
+.+++.+..+..|...+.++.|++. +.++++++.|+.+++||+.+......+..+...+.++.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------- 147 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG---------- 147 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC----------
Confidence 9998899999999999999999765 4688888889999999998766666665555556666665554
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
.++++++.++.|++||+.+++.+..+..+.. .+.+++|+|+++.+++++.++.+++||..++. ...
T Consensus 148 -----------~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~ 213 (289)
T cd00200 148 -----------TFVASSSQDGTIKLWDLRTGKCVATLTGHTG--EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLG 213 (289)
T ss_pred -----------CEEEEEcCCCcEEEEEccccccceeEecCcc--ccceEEECCCcCEEEEecCCCcEEEEECCCCc-eec
Confidence 4677777799999999998888888875543 68999999999999999999999999876431 000
Q ss_pred ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415 656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 735 (1082)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 735 (1082)
.+.
T Consensus 214 ~~~----------------------------------------------------------------------------- 216 (289)
T cd00200 214 TLR----------------------------------------------------------------------------- 216 (289)
T ss_pred chh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec
Q 001415 736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 814 (1082)
Q Consensus 736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~ 814 (1082)
.|...+.+++|++++.++++++ ++.|++||+
T Consensus 217 ------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 217 ------------------------------------------------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred ------------------------------------------------hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 0445677888888888888888 899999999
Q ss_pred CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
.+++....+..|...+.+++|+| ++.+|++++.||.|++|+
T Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 249 RTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 99899999988999999999999 889999999999999996
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-29 Score=236.55 Aligned_cols=293 Identities=18% Similarity=0.296 Sum_probs=229.3
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
.+.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.||++.|+|++...+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999999998777 8999999999999999999 79999999999999
Q ss_pred EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|+++|+++..++ ...+|..+.|++.+ ++++.+..+ .+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~-~m--------------------------------------- 116 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDK-QM--------------------------------------- 116 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehh-hc---------------------------------------
Confidence 999999999988 56788888887655 344433321 10
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECC-------CcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEe
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-------SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~ 647 (1082)
+..+.|.++|++ ..++...+..+. ..++.+-|+|-+++|++|..+|.|.+||.
T Consensus 117 ------------------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 117 ------------------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDA 176 (327)
T ss_pred ------------------CcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEc
Confidence 112233344433 334444444443 36888999999999999999999999999
Q ss_pred cCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEE
Q 001415 648 SDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 727 (1082)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 727 (1082)
.++.+.+...
T Consensus 177 ~~g~~~v~s~---------------------------------------------------------------------- 186 (327)
T KOG0643|consen 177 RTGKELVDSD---------------------------------------------------------------------- 186 (327)
T ss_pred ccCceeeech----------------------------------------------------------------------
Confidence 8873322100
Q ss_pred ccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-C
Q 001415 728 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G 806 (1082)
Q Consensus 728 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-d 806 (1082)
..|...|+.+++++|..++++++ |
T Consensus 187 -------------------------------------------------------~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 187 -------------------------------------------------------EEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred -------------------------------------------------------hhhccccccccccCCcceEEecccC
Confidence 01667788888999999999998 6
Q ss_pred CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-------------cEEEEecccceeeeeecccccCE
Q 001415 807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-------------SIQIYNVRVDEVKSKLKGHSKRI 873 (1082)
Q Consensus 807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-------------~v~iwd~~~~~~~~~l~~h~~~V 873 (1082)
.+-++||..+.++++++. ...+|++.+++|.....+..|+.+. .-+.|++-..+.+..+++|-++|
T Consensus 212 ttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI 290 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI 290 (327)
T ss_pred ccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence 789999999999999887 4568999999994444444444332 12334444456677889999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415 874 TGLAFSHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
++++|+|||+..+||+.||.|++.-++.
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEecc
Confidence 9999999999999999999999997765
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.1e-28 Score=299.59 Aligned_cols=311 Identities=14% Similarity=0.224 Sum_probs=220.8
Q ss_pred CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC----cee
Q 001415 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 455 (1082)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~----~~~ 455 (1082)
+|.+++|+..+....... ...-+..|.+.|.+++|+|||++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888764443210 01124569999999999999999999999999999998642 111
Q ss_pred e-EEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCc
Q 001415 456 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534 (1082)
Q Consensus 456 ~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 534 (1082)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.|+.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3468999999886433 7999999999999999999999999999999999998753 2356677766666
Q ss_pred EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEec
Q 001415 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1082)
Q Consensus 535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1082)
|++||+. ++..+..+..
T Consensus 600 v~iWd~~---------------------------------------------------------------~~~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSIN---------------------------------------------------------------QGVSIGTIKT 616 (793)
T ss_pred EEEEECC---------------------------------------------------------------CCcEEEEEec
Confidence 6666654 3333333332
Q ss_pred CCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCc
Q 001415 615 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDK 693 (1082)
Q Consensus 615 ~~~~~~i~~~~~s-~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 693 (1082)
+. .+.++.|+ ++|.+|++|+.||.|++||+.+.......+.
T Consensus 617 ~~---~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~----------------------------------- 658 (793)
T PLN00181 617 KA---NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI----------------------------------- 658 (793)
T ss_pred CC---CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----------------------------------
Confidence 21 36778884 5799999999999999999865411110000
Q ss_pred eeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCc
Q 001415 694 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 773 (1082)
Q Consensus 694 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1082)
+|...|..+.|. ++..+++++.|
T Consensus 659 -----------------------~h~~~V~~v~f~-~~~~lvs~s~D--------------------------------- 681 (793)
T PLN00181 659 -----------------------GHSKTVSYVRFV-DSSTLVSSSTD--------------------------------- 681 (793)
T ss_pred -----------------------CCCCCEEEEEEe-CCCEEEEEECC---------------------------------
Confidence 033344444443 33344444444
Q ss_pred ceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCC------CeeEEEECCCCCCeeEEEEecCCCcEEEEEe
Q 001415 774 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT------FKTMATFMPPPPAATFLAFHPQDNNIIAIGM 847 (1082)
Q Consensus 774 ~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~ 847 (1082)
+.|++||+.. ...+..+.+|...+.+++|+| ++.+||+|+
T Consensus 682 ---------------------------------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs 727 (793)
T PLN00181 682 ---------------------------------NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGS 727 (793)
T ss_pred ---------------------------------CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEe
Confidence 4555555442 245677888999999999999 789999999
Q ss_pred CCCcEEEEecccceeeee-------------ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001415 848 DDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 899 (1082)
Q Consensus 848 ~dg~v~iwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 899 (1082)
.||.|++|+......+.. ...|...|.+++|+|++..|++|+.||+|+||++
T Consensus 728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999765433211 1345567999999999999999999999999986
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.3e-28 Score=299.20 Aligned_cols=305 Identities=14% Similarity=0.183 Sum_probs=230.5
Q ss_pred ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CC
Q 001415 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 432 (1082)
Q Consensus 354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 432 (1082)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+...... ........+ .+...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~-~~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVEL-ASRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEe-cccCceeeEEeccCCC
Confidence 345999999999999999 599999999999999864211000 000000012 2346899999988 58
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC-CCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
.+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999887665 6889999999999997 667 8999999999999999999999888855 67
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
|.++.|.+ +++.++++|+.||.|++||++... ....+..|...|..+.|. + +..++
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~---------------------~~~lv 676 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D---------------------SSTLV 676 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---------------------CCEEE
Confidence 88888854 456899999999999999998754 334555566666666654 2 34799
Q ss_pred EEeCCCeEEEEECCCc------ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccc
Q 001415 591 AAGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 664 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1082)
+++.|+.|++||+..+ .++..+.+|.. .+..++|++++.+|++|+.|+.|++|+...... ...+......
T Consensus 677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-~~s~~~~~~~- 752 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-VLSYKFKTID- 752 (793)
T ss_pred EEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-eEEEecccCC-
Confidence 9999999999999743 45667766544 678899999999999999999999999765411 1111000000
Q ss_pred cccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEE
Q 001415 665 SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 744 (1082)
Q Consensus 665 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 744 (1082)
....+.. ..+...|.+++|++++..+++++.+|.|+
T Consensus 753 ------------------------------------------~~~~~~~--~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 753 ------------------------------------------PVSGLEV--DDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred ------------------------------------------ccccccc--CCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 0000000 11556799999999999999999999999
Q ss_pred Eeec
Q 001415 745 LWKW 748 (1082)
Q Consensus 745 iw~~ 748 (1082)
+|++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9975
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=245.68 Aligned_cols=291 Identities=19% Similarity=0.295 Sum_probs=236.8
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
....+.+..|+|||+++++++-||.|.+|+...+....+-+.-+. ..... +...|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fMM--------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFMM--------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cceee--------cccceEEEeeccc
Confidence 456678899999999999999999999999876654443332221 11111 6788999999999
Q ss_pred CCeEEEee-CCeEEEEecCCCeeEEEEC-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE
Q 001415 798 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 875 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 875 (1082)
...+|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||++.|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999998 8999999999999999987 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC-CcEEEEE-ecCeEEEEEccCcce
Q 001415 876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLEC 953 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~~-~d~~i~iwd~~~~~~ 953 (1082)
..|++||..+++++.||+|+||+.++.++.. .+.... ....|..+-.-|. -..++++ ..+++.|.++ .|+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceE
Confidence 9999999999999999999999999966533 222111 1145666666664 3445554 5578888887 5777
Q ss_pred eeeeccCCC-CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEE
Q 001415 954 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1032 (1082)
Q Consensus 954 ~~~~~~~~h-~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~ 1032 (1082)
++.+..... .+...+.+.||.|.++++.++|+.++.|.+.+|++...+..+.-. ++.++.+|. .+++|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHPH-qNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHPH-QNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCcc-cchhh
Confidence 777764322 456677789999999999999999999999999999887743322 345788885 68999
Q ss_pred EEecCCcEEEEc
Q 001415 1033 LGLSDGGVHVFE 1044 (1082)
Q Consensus 1033 s~~~dg~v~vW~ 1044 (1082)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=235.20 Aligned_cols=312 Identities=14% Similarity=0.196 Sum_probs=228.4
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeee-eceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
-..+..|++++.+.+|||||. |+|+|+.|..|+|.|++..-.... ..+..-+ .....|... .+-.|.++|+++.|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~-~qa~hPvIR-TlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGD-TQARHPVIR-TLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCC-cccCCceEe-ehhhccCcccceeec
Confidence 346667999999999999999 799999999999999973111000 0000000 011112222 478899999999999
Q ss_pred cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe---e
Q 001415 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E 506 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~ 506 (1082)
|....|++|+.|++|+++|.......+....+ ....+|.++.|.|.|. +|+.|....++++||+++-++...- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999765433222122 3456899999999999 8999999999999999998887654 4
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
.|.+.|+++.+++ .+.+.++++.||.|++||--+.+++.++. ..|.+..+.+..|..++
T Consensus 259 qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------------------~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 259 QHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIG-------------------NAHGGSEVCSAVFTKNG 317 (430)
T ss_pred ccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHH-------------------hhcCCceeeeEEEccCC
Confidence 6899999998754 55799999999999999977665554332 12333355666666666
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEecCCCCC---CcCeEEEcCCCCEEEEEEC-CCcEEEEEecCCccceeecccccc
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLAY 662 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~dg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1082)
+++++.|.|..+++|.+.+++++..+.+.+... .-+...|+....+++.-.. .+.+.-||.++..+.
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~--------- 388 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV--------- 388 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh---------
Confidence 799999999999999999999999987653221 1234456666666655432 456777777665221
Q ss_pred cccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCe
Q 001415 663 DASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 742 (1082)
Q Consensus 663 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 742 (1082)
.+|.+ +|.+.+..+.-+|.+..+++++.|..
T Consensus 389 --------------------------------~l~sl-----------------gHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 389 --------------------------------ALLSL-----------------GHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred --------------------------------hhccc-----------------CCCCCceEEEeCCCCCceeeecccce
Confidence 12221 28888899999999999999999999
Q ss_pred EEEee
Q 001415 743 HLLWK 747 (1082)
Q Consensus 743 i~iw~ 747 (1082)
.++|-
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99984
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=7.3e-28 Score=237.68 Aligned_cols=305 Identities=17% Similarity=0.278 Sum_probs=229.3
Q ss_pred cCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCC-ceEEEEEeCCCcEEEEE
Q 001415 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~~~l~s~s~d~~i~vwd 495 (1082)
.-|.+.|.++... +++|++|+.||.+++||..... .. .+.||.++|.+++|--.+. .-.|++++.|.++++|-
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4588999999887 8899999999999999988653 33 5889999999888843322 12599999999999999
Q ss_pred ccCCce----eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCc------eEEEEEccCC
Q 001415 496 ATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW------CTTMAYSADG 565 (1082)
Q Consensus 496 ~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~d~ 565 (1082)
++.+.. +....||...|.++... ++|..+++|+.|.+|.+|+...... -.++..... -..-.-....
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCc
Confidence 987754 34456999999999875 4557999999999999999322110 000000000 0000000000
Q ss_pred CeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001415 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1082)
Q Consensus 566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iw 645 (1082)
..++.||.. .+..+.|++ ...+++++.|.+|+.||+.++..+..+.... .+.++.++|..++|++|+.|..+++|
T Consensus 253 ~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 253 LVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred eEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeec
Confidence 022333333 566666666 4578999999999999999999988886544 47899999999999999999999999
Q ss_pred EecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEE
Q 001415 646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 725 (1082)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 725 (1082)
|.+++..
T Consensus 328 DPR~~~g------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 328 DPRTGDG------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCCC-------------------------------------------------------------------------
Confidence 8765410
Q ss_pred EEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee
Q 001415 726 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 805 (1082)
Q Consensus 726 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s 805 (1082)
T Consensus 335 -------------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 335 -------------------------------------------------------------------------------- 334 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce-eeeeecccccCEEEEEEeCCCCE
Q 001415 806 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNV 884 (1082)
Q Consensus 806 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~ 884 (1082)
.-...++.+|.+-|.++.|+|.+..+|++|+.|+++++||+++.+ .+..+.+|...|.++.|+ ++..
T Consensus 335 -----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~ 402 (423)
T KOG0313|consen 335 -----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGL 402 (423)
T ss_pred -----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCce
Confidence 001234556777888888888788899999999999999999877 899999999999999997 6779
Q ss_pred EEEEeCCCcEEEEEcC
Q 001415 885 LVSSGADSQLCVWSSD 900 (1082)
Q Consensus 885 l~s~s~Dg~i~vwd~~ 900 (1082)
+++||.|.+|+++.-.
T Consensus 403 IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 403 IVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccCcceEEEeccc
Confidence 9999999999998654
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=211.20 Aligned_cols=319 Identities=16% Similarity=0.240 Sum_probs=238.6
Q ss_pred ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
..+.++.....|.+++|+|.|. |.|+|+...+.+|-.+..-..++. ..+.....+....+-.+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEec
Confidence 3567778899999999999999 799999999998876643222210 00001111111222357899999999999
Q ss_pred cCCCeEEEEeCCCeEEEEEcc--CCceeeEEEEeeccccCeeEEEecCC---CCceEEEEEe-CCCcEEEEEccCCceeE
Q 001415 430 PDGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~--~~~~~~~~~~~~~h~~~V~~l~fs~d---g~~~~l~s~s-~d~~i~vwd~~~~~~~~ 503 (1082)
|+|++||+|+.|.+|++.-.. +........++.-|.+.|..++|..+ +.. +|++++ .|..|.+-|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999986554 44444444578889999999999654 222 666655 57889999999999999
Q ss_pred EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~ 583 (1082)
.+.||++.|.++-- =++.++++|+.|.+|++||++-...+..+... .--.|-....+..++.+
T Consensus 178 a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd 240 (350)
T KOG0641|consen 178 ALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence 99999999988742 23468999999999999999865544433211 01112223467778888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1082)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1082)
|.|+.|++|-.|....+||++.++.++.+..|.. .|.++.|+|...++++++.|..|++-|++... .+.+ +
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~syd~~ikltdlqgdl--a~el-----~ 311 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL--AHEL-----P 311 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecccceEEEeecccch--hhcC-----c
Confidence 8888999999999999999999999999987765 79999999999999999999999999886441 1111 0
Q ss_pred ccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeE
Q 001415 664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 743 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 743 (1082)
+ ++++ .|..++..+.|.|..-.+++.+.|.+.
T Consensus 312 ~--------------------~vv~----------------------------ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 312 I--------------------MVVA----------------------------EHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred e--------------------EEEE----------------------------eccCceEEEEecCccceeeeccCcceE
Confidence 0 0010 077778888999998889999999999
Q ss_pred EEeec
Q 001415 744 LLWKW 748 (1082)
Q Consensus 744 ~iw~~ 748 (1082)
.+|.+
T Consensus 344 tlwa~ 348 (350)
T KOG0641|consen 344 TLWAL 348 (350)
T ss_pred EEecc
Confidence 99954
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-27 Score=222.35 Aligned_cols=301 Identities=12% Similarity=0.114 Sum_probs=236.8
Q ss_pred eeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 352 ~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1082)
+.+.+|..+++.+.|+.+|. ||++++.|.++.||-..+|+.+.+ +.||++.|+|++.+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 35667999999999999999 799999999999999999999985 8899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-----CCCcEEEEEcc-------CC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDAT-------NG 499 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-----~d~~i~vwd~~-------~~ 499 (1082)
.+++++|+.|.++++||+++|+++.. +. -..+|..+.|+++|.. ++.+. ..+.|.++|++ +.
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~k-~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---WK-TNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---ee-cCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998873 32 4568999999999993 33332 34679999998 45
Q ss_pred ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeeccccccee
Q 001415 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1082)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~ 578 (1082)
++...+..+...++.+.|.+.+ ++|++|..||.|.+||++++.... ....|...|..+.+++|..
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T------------ 203 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT------------ 203 (327)
T ss_pred CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc------------
Confidence 6688888889999999998766 699999999999999999875544 4456666777777777766
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1082)
++++++.|.+-++||..+-+.++++.... ++++.+++|-...++.|+..... |+.+.......++
T Consensus 204 ---------~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r~GKFE 268 (327)
T KOG0643|consen 204 ---------YFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQEAM---DVTTTSTRAGKFE 268 (327)
T ss_pred ---------eEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCCceee---eeeeecccccchh
Confidence 89999999999999999999999987654 68999999988888877653332 2222111111111
Q ss_pred cccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc
Q 001415 659 NLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 738 (1082)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 738 (1082)
. +.|++--.+..... .+|-++|.+++|+|+|+..++++
T Consensus 269 A-----------------------------------rFyh~i~eEEigrv-------kGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 269 A-----------------------------------RFYHLIFEEEIGRV-------KGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred h-----------------------------------hHHHHHHHHHhccc-------cccccCcceeEECCCCcccccCC
Confidence 1 11111111111111 23999999999999999999999
Q ss_pred cCCeEEEeecc
Q 001415 739 SNAIHLLWKWQ 749 (1082)
Q Consensus 739 ~d~~i~iw~~~ 749 (1082)
.||.|++.-++
T Consensus 307 EDG~VR~h~Fd 317 (327)
T KOG0643|consen 307 EDGYVRLHHFD 317 (327)
T ss_pred CCceEEEEEec
Confidence 99999997554
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=229.21 Aligned_cols=306 Identities=16% Similarity=0.245 Sum_probs=253.9
Q ss_pred CcccccceeEEEEc---cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccE
Q 001415 715 ENLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 791 (1082)
Q Consensus 715 ~~~~~~~i~~~~~s---~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 791 (1082)
..+|..+|..++|+ |+|-+|++++.|+.-.+- +-.+|.-+... .+|.+.|.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr----------------------~g~tgdwigtf---eghkgavw~ 64 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR----------------------NGDTGDWIGTF---EGHKGAVWS 64 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhc----------------------cCCCCCcEEee---eccCcceee
Confidence 35599999999997 588889999998754432 33445444432 249999999
Q ss_pred EEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeeccc
Q 001415 792 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGH 869 (1082)
Q Consensus 792 l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h 869 (1082)
.++..+....|+++ |=+-++||.-+|..+..+. |..-|.+++|+. |.++|++|+.+..+||||++.. ....++.+|
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 99999888888887 6779999999999999987 888999999999 8999999999999999999865 345778999
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415 870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 949 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~ 949 (1082)
.+.|..+.|....+.++|++.|++||+||..++...+... .. ..|+++..++||++|.++..+.|.+||.+
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cC-------CCCcceeeccCCCEEEEecCceeEEeccc
Confidence 9999999999999999999999999999999976533222 11 46899999999999999999999999999
Q ss_pred CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC
Q 001415 950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1029 (1082)
Q Consensus 950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~ 1029 (1082)
+...+..+.. ...|.+..++|+...+++|++|..++.||+.+|+.+.... .||.+ .+.++.|+| ||.
T Consensus 214 sf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~g---pVhcVrFSP-dGE 280 (334)
T KOG0278|consen 214 SFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFG---PVHCVRFSP-DGE 280 (334)
T ss_pred cccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCC---ceEEEEECC-CCc
Confidence 9999888775 4579999999999999999999999999999999997642 14422 244999999 799
Q ss_pred eEEEEecCCcEEEEccCCCC--CccccCCCCCCCCCCCCCCC
Q 001415 1030 EFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSSMPAT 1069 (1082)
Q Consensus 1030 ~l~s~~~dg~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1069 (1082)
..++|++||+|++|....++ +.|.-..|-+.|.-.+.|+.
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev~s~~e 322 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEVASPKE 322 (334)
T ss_pred eeeccCCCceEEEEEecCCCchhhccccChhhhccccccccc
Confidence 99999999999999998888 56777777766665554443
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.8e-27 Score=234.98 Aligned_cols=291 Identities=15% Similarity=0.260 Sum_probs=233.2
Q ss_pred CcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE
Q 001415 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1082)
Q Consensus 348 ~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1082)
+++-...+.|.+.|.++... +++ +++|+.||.++|||.. |+... .+.||+++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence 45556778899999999999 564 9999999999999986 44443 2789999999888
Q ss_pred EecCC---CeEEEEeCCCeEEEEEccCCceee-EEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-----
Q 001415 428 WSPDG---SLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 498 (1082)
Q Consensus 428 ~spdg---~~las~~~d~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~----- 498 (1082)
|---. ..+++++.|.++++|.++.++... ....-.||...|-+++..++|. .+++|+.|.+|.||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 75433 359999999999999998775432 1113459999999999999999 799999999999999321
Q ss_pred --------------------CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEE
Q 001415 499 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1082)
Q Consensus 499 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 558 (1082)
+.++.++.||..+|.++.|.+ . ..+++++.|.+|+.||+.++.....+..
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~------- 299 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT------- 299 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-------
Confidence 235667889999999999975 3 5899999999999999998766544332
Q ss_pred EEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEEecCCCCCCcCeEEEcC-CCCEEE
Q 001415 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 634 (1082)
Q Consensus 559 ~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~i~~~~~s~-dg~~l~ 634 (1082)
...+.++.++|..+.+++|+.|..|++||.+++. ....+.+|.. .|.++.|+| +...|+
T Consensus 300 ---------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 300 ---------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLV 362 (423)
T ss_pred ---------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh--hhhheecCCCCceEEE
Confidence 2255566666666799999999999999998764 2345555544 899999999 556788
Q ss_pred EEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700 (1082)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~ 700 (1082)
+++.|+++++||+++....+..+.+|...+. ++.| .++..+++|+.|.+++++...
T Consensus 363 S~S~D~t~klWDvRS~k~plydI~~h~DKvl--~vdW--------~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL--SVDW--------NEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecCCeEEEEEeccCCCcceeeccCCceEE--EEec--------cCCceEEeccCcceEEEeccc
Confidence 9999999999999999778888888877766 5555 467789999999999998754
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=263.84 Aligned_cols=302 Identities=17% Similarity=0.228 Sum_probs=209.6
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec---CC
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP---DG 432 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg 432 (1082)
.|++.||++.||+||+| ||+|+.||.|+||.+...+.... +......... .+.. .+.+..+..++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~--~~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRV------AEGDSSCMYF--EYNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcc------cccccchhhh--hhhh-ccccCccccccccccc
Confidence 59999999999999995 99999999999999976443211 0000000000 0000 00011111111 11
Q ss_pred C--eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415 433 S--LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 433 ~--~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
+ ....+.....+.+-+..-.-.-.++..+.||.+.|.++.||.++ +|++++.|++||+|++....|++.|. |.+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11112222222221111111112334789999999999999877 69999999999999999999999998 999
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
.|+|++|+|..| +++++|+.|+.+|||++...+... +..-..-|+++ +|.|+|+..+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAv---------------------cy~PdGk~av 467 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAV---------------------CYSPDGKGAV 467 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEe-ehhhhhhheeE---------------------EeccCCceEE
Confidence 999999999877 799999999999999987533322 22222444444 4555555899
Q ss_pred EEeCCCeEEEEECCCcceEEEEecCCC------CCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDADGG------LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1082)
+|+.+|.+++|+....+.......+.+ ...|+.+.|.| +...+++.+.|..|+|+|.++. .++..+.+....
T Consensus 468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNT 546 (712)
T ss_pred EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccC
Confidence 999999999999988877665543221 12699999998 4456888899999999999766 677777776665
Q ss_pred ccccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415 664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~ 702 (1082)
.......| +.||+++++++.|..|++|++...
T Consensus 547 ~SQ~~Asf-------s~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 547 SSQISASF-------SSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CcceeeeE-------ccCCCEEEEeecCceEEEEeCCCC
Confidence 55445555 889999999999999999998653
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-26 Score=219.62 Aligned_cols=289 Identities=21% Similarity=0.374 Sum_probs=224.2
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC--CCcEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIK 492 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~--d~~i~ 492 (1082)
.+..-.+.|+++.|+++|.+|++++.|.+++|||..+++.++ ++..+...|..+.|...... ++.++. |.+||
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceE
Confidence 456677899999999999999999999999999999999877 67777889999999888774 555554 88999
Q ss_pred EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1082)
Q Consensus 493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 572 (1082)
.-++.+.+.++.|.||...|.+++.+|.+ ..+++++.|++|++||++
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR------------------------------- 130 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLR------------------------------- 130 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEec-------------------------------
Confidence 99999999999999999999999987765 355666555555555554
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
..++...+.... -..+||.|+|-++|++...+.|++||++.-..
T Consensus 131 --------------------------------~~~cqg~l~~~~----~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 131 --------------------------------VKKCQGLLNLSG----RPIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred --------------------------------CCCCceEEecCC----CcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 444443333222 24588999999999988888999998764310
Q ss_pred ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415 653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 732 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 732 (1082)
++-.. |..+
T Consensus 175 -------------------------------------------------------------------gPF~t--f~i~-- 183 (311)
T KOG1446|consen 175 -------------------------------------------------------------------GPFTT--FSIT-- 183 (311)
T ss_pred -------------------------------------------------------------------CCcee--EccC--
Confidence 00000 0000
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEE
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISL 811 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~i 811 (1082)
.+.....+.+.|||||++++.+.+ +.+++
T Consensus 184 --------------------------------------------------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~ 213 (311)
T KOG1446|consen 184 --------------------------------------------------DNDEAEWTDLEFSPDGKSILLSTNASFIYL 213 (311)
T ss_pred --------------------------------------------------CCCccceeeeEEcCCCCEEEEEeCCCcEEE
Confidence 002344567888999998887764 77899
Q ss_pred EecCCCeeEEEECCCCCC---eeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecc-cccCEEEEEEeCCCCEEEE
Q 001415 812 FNMMTFKTMATFMPPPPA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVS 887 (1082)
Q Consensus 812 wd~~~~~~~~~~~~~~~~---v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s 887 (1082)
.|.-+|....++..+... ....+|+| |++++.+|+.||+|.+|++++|..+..+++ +.+++.++.|+|.-.+++|
T Consensus 214 lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s 292 (311)
T KOG1446|consen 214 LDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS 292 (311)
T ss_pred EEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee
Confidence 999999988888776544 36789999 999999999999999999999999999998 7999999999998877777
Q ss_pred EeCCCcEEEEEcCC
Q 001415 888 SGADSQLCVWSSDG 901 (1082)
Q Consensus 888 ~s~Dg~i~vwd~~~ 901 (1082)
+ +..+.+|=...
T Consensus 293 a--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 293 A--SSNLVFWLPDE 304 (311)
T ss_pred c--CceEEEEeccc
Confidence 6 45688886654
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=239.25 Aligned_cols=295 Identities=17% Similarity=0.229 Sum_probs=233.4
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeecc----CCCCcccccccccCCCCceeEE
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL----GACSMPLQAALVKDPGVSVNRV 426 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~V~~l 426 (1082)
......|.-+|.||+++||+++ .++++.+|+|.=|++.+|+.... +|.- .....+.+..- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 3455569999999999999996 99999999999999999986521 1111 00112222211 4899999999
Q ss_pred EEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1082)
Q Consensus 427 ~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 506 (1082)
+.||||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999998777 6899999999999987666 58999999999999999999999999
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
||.+.|.++...... ..+.+|+.|+++++|++. .+....+.++.+.+.+++|-.+.
T Consensus 284 GHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~--------------------- 339 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE--------------------- 339 (479)
T ss_pred CCccceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---------------------
Confidence 999999999765433 566666699999999994 44555666666666666665544
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEecCCC----------CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceee
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1082)
+|++|+.+|.|.+|++...+++.+.....+ ..+|++++..|...++++|+.+|.|++|.+.++.+.+..
T Consensus 340 -HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 340 -HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred -ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 599999999999999999988876643211 126889999999999999999999999999998666555
Q ss_pred cccccccccccccccCCCCccccCCCCceeee
Q 001415 657 FENLAYDASRTSENSKNGDVRSLADVKPRITE 688 (1082)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 688 (1082)
+..........+++| +.+|+.+++|
T Consensus 419 l~~ls~~GfVNsl~f-------~~sgk~ivag 443 (479)
T KOG0299|consen 419 LYSLSLVGFVNSLAF-------SNSGKRIVAG 443 (479)
T ss_pred eeecccccEEEEEEE-------ccCCCEEEEe
Confidence 554444433335555 8888876665
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.7e-28 Score=240.44 Aligned_cols=296 Identities=18% Similarity=0.263 Sum_probs=241.7
Q ss_pred CCCCcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCce
Q 001415 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1082)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 423 (1082)
+.+|......+. |.++|..+.|-++... |++|+.|..|.+|++..++.-. ...+.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 334555545454 9999999999999774 9999999999999998766221 11377888999
Q ss_pred eEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 424 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~ 503 (1082)
+.+.|.++++++++++.|+.+++|++....... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987666 8999999999999988776 59999999999999999999888
Q ss_pred EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~ 583 (1082)
++- ....+..++.. ...+++|-.|+.|++||.++.........++ .|+++..+++|.
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~----------------- 354 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL----------------- 354 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-----------------
Confidence 765 33445555543 2578999999999999999888777766655 677777666665
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccc
Q 001415 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1082)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1082)
.+++++.|.++.+.|+++.+....+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++...+....
T Consensus 355 ----~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~ 429 (459)
T KOG0288|consen 355 ----ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLST 429 (459)
T ss_pred ----EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCC
Confidence 788899999999999999998888865542 234788999999999999999999999999998 5655555544
Q ss_pred ccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 662 YDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 662 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
......++.| .+.|..+++++.++.+.+|.
T Consensus 430 s~~aI~s~~W-------~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 430 SNAAITSLSW-------NPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCcceEEEEE-------cCCCchhhcccCCcceEecC
Confidence 4422226777 89999999999999999983
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=236.90 Aligned_cols=286 Identities=17% Similarity=0.264 Sum_probs=236.7
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
..+.|.+++|+|...+=++.+..-.+.+|+..... ...... .....+.+++|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~----------------------~~k~~s---rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS----------------------VRKTFS---RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh----------------------hhhhHH---hhccceeEEEeecC
Confidence 56789999999987665555566667777543221 111111 15678999999999
Q ss_pred CCeEEEeeC-CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415 798 DSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 876 (1082)
Q Consensus 798 g~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 876 (1082)
|+++|+|.+ |.|+|||..+...++.+..|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999985 9999999888778889999999999999999999999999999999999999998877999999999999
Q ss_pred EEeCCC-CEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceee
Q 001415 877 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 955 (1082)
Q Consensus 877 ~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~ 955 (1082)
+|+|-. .+++|||.||+|++||+.... ........+ .+|..+.|-|.|..+|++....++|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999865 489999999999999998842 234444444 56899999999999999999999999999776655
Q ss_pred eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEe
Q 001415 956 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus 956 ~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
.... .|...|+|+++..|+..|++|+-|+.|+|||+.+.+.+..+. .|.. .++++-+| |++.++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-------vLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-------VLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-------eeeEEecC-CCceEEEec
Confidence 4442 489999999999999999999999999999999999998877 3332 45788888 578999999
Q ss_pred cCCcEEEEccCCCC
Q 001415 1036 SDGGVHVFEPLESE 1049 (1082)
Q Consensus 1036 ~dg~v~vW~~~~~~ 1049 (1082)
.||.+.+=+....+
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999887666655
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=215.96 Aligned_cols=276 Identities=16% Similarity=0.242 Sum_probs=227.0
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE--eecCCcCeEEEeeeecCCceEEEEecCCCcEEE
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 537 (1082)
.+.+|...|.+++|+.+|. .|++|+.|+++.+|+++..+.... ..+|.+.|-.++|++... ..+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 799999999999999998765543 468999999999988655 68999999999999
Q ss_pred EecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC
Q 001415 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1082)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1082)
||.+..++..........+ .+.|+|+|+++++++.|..|.+.|.++.+.+...+...
T Consensus 92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~- 148 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF- 148 (313)
T ss_pred EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence 9999888776655444333 24555666699999999999999999988877665443
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEE
Q 001415 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVW 697 (1082)
Q Consensus 618 ~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw 697 (1082)
.+..++|+-++.+++.....|.|.|...... +
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-k--------------------------------------------- 180 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-K--------------------------------------------- 180 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEecccc-c---------------------------------------------
Confidence 3677888877777777666677776643211 0
Q ss_pred EecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415 698 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777 (1082)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1082)
++.++
T Consensus 181 -----------------------pv~si---------------------------------------------------- 185 (313)
T KOG1407|consen 181 -----------------------PVQSI---------------------------------------------------- 185 (313)
T ss_pred -----------------------ccccc----------------------------------------------------
Confidence 00000
Q ss_pred cccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 778 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
..|.....|+.|+|+|+++|+|+ |..+.+||++..-+.+.+..+.-+|..+.||. +|++||+|++|..|-|-+
T Consensus 186 -----~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 186 -----KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAE 259 (313)
T ss_pred -----ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEe
Confidence 11677778899999999999998 67899999999999999999999999999999 999999999999999999
Q ss_pred cccceeeeeecccccCEEEEEEeCCCCEEEEEeCC
Q 001415 857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 891 (1082)
Q Consensus 857 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 891 (1082)
+++|..+..++ +.++-..++|+|...+||.++.|
T Consensus 260 vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 260 VETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999888887 78899999999999999998776
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=237.29 Aligned_cols=284 Identities=20% Similarity=0.278 Sum_probs=228.6
Q ss_pred ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1082)
Q Consensus 354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1082)
.....+.|.+++|||...+=+|+.+ .-.+.||+..+...... +......|.++.|-.||+
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGR 81 (487)
T ss_pred cccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCe
Confidence 3446689999999997765455443 56788999877665542 444567899999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 513 (1082)
+||+|+..|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 99999999999999977755555 68899999999999999887 899999999999999999998779999999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
+.+|+|-.+ +.+++|+.||.|++||.+........-.|+.+|..+.+-|.|. .+++++
T Consensus 158 ~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg 215 (487)
T KOG0310|consen 158 CGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG 215 (487)
T ss_pred eeccccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC
Confidence 999987654 7999999999999999998765555555777777777777765 566665
Q ss_pred CCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccC
Q 001415 594 DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1082)
Q Consensus 594 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1082)
...+++||+.+|.. +.....|. ..|+|+++..++..|++++-|+.+++||..+- +.+
T Consensus 216 -Gn~vkVWDl~~G~qll~~~~~H~--KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv------------------ 273 (487)
T KOG0310|consen 216 -GNSVKVWDLTTGGQLLTSMFNHN--KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVV------------------ 273 (487)
T ss_pred -CCeEEEEEecCCceehhhhhccc--ceEEEEEeecCCceEeecccccceEEEEccce-EEE------------------
Confidence 45799999986554 44444343 37999999999999999999999999996543 221
Q ss_pred CCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415 673 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 746 (1082)
Q Consensus 673 ~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 746 (1082)
.-|. -.++|.+++.+|+++.++.|..||.+.+-
T Consensus 274 ----------------------~s~~-------------------~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 274 ----------------------HSWK-------------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ----------------------Eeee-------------------cccceeeEEecCCCceEEEecccceeeee
Confidence 1222 34578889999999999999999887765
No 81
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=2.7e-25 Score=232.28 Aligned_cols=501 Identities=17% Similarity=0.228 Sum_probs=329.0
Q ss_pred eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
.+..+.+|...|+.+.|++-.| .+|++|+.|..|+||.+..+... .+. ...+..++.+..+.++
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g~~q-~LS--------------ape~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRGHSQ-KLS--------------APEIDVGGGNVIVECL 134 (1012)
T ss_pred ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCCccc-ccC--------------CcceeecCCceEEEEe
Confidence 4556788999999999998777 58999999999999988632111 111 0123334445577888
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1082)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1082)
.|+|...-++..+..|+++|||+.+++.+..+.+|.. .|.++.|+.||.+|++.+.|..|+|||.+.....++..++|
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d--~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD--KVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCCch--hhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 8888887888888899999999999999999988776 68999999999999999999999999999887888888887
Q ss_pred cccccccccccCCCCccccCCCCceeeeccC----CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeee
Q 001415 661 AYDASRTSENSKNGDVRSLADVKPRITEESN----DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILA 736 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 736 (1082)
....- ..+.| ..+-..+++.+.+ ..+++||............+. ....|.--.|.||.+.++.
T Consensus 213 ~~~rd-sRv~w-------~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld-----~stGvLiPl~DpDt~llfL 279 (1012)
T KOG1445|consen 213 GGMRD-SRVLW-------AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELD-----SSTGVLIPLYDPDTRLLFL 279 (1012)
T ss_pred ccchh-heeee-------ccchhhhhhcccchhhheeeeeeeccccCCcceeEEee-----cccceEeeeecCCCceEEE
Confidence 76522 23444 4444566666554 478999988765443332222 2334444567777765544
Q ss_pred cc-cCCeEEEeeccccc---------------------------------------------------------------
Q 001415 737 LA-SNAIHLLWKWQRTE--------------------------------------------------------------- 752 (1082)
Q Consensus 737 ~~-~d~~i~iw~~~~~~--------------------------------------------------------------- 752 (1082)
++ .+..+..+++...+
T Consensus 280 aGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DL 359 (1012)
T KOG1445|consen 280 AGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDL 359 (1012)
T ss_pred ecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhh
Confidence 43 35666666665432
Q ss_pred ----------------------------cC--------------C----------------------------CCC--cc
Q 001415 753 ----------------------------RN--------------S----------------------------SGK--AT 760 (1082)
Q Consensus 753 ----------------------------~~--------------~----------------------------~~~--~~ 760 (1082)
.. | .+. ..
T Consensus 360 fPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd 439 (1012)
T KOG1445|consen 360 FPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPD 439 (1012)
T ss_pred CccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCc
Confidence 00 0 000 00
Q ss_pred cccCccc-------------cCCCCc---------------------------------ceee----------c----cc
Q 001415 761 ASVAPQL-------------WQPPSG---------------------------------IMMT----------N----DV 780 (1082)
Q Consensus 761 ~~~~~~~-------------~~~~~~---------------------------------~~~~----------~----~~ 780 (1082)
......+ ++...| ..+. . ..
T Consensus 440 ~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksv 519 (1012)
T KOG1445|consen 440 VQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSV 519 (1012)
T ss_pred cccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccC
Confidence 0000000 000000 0000 0 00
Q ss_pred C----------------------------------------C-CCCCCC-c------------cEEEeecCCCeEEE---
Q 001415 781 T----------------------------------------D-SNPEEA-V------------PCFALSKNDSYVMS--- 803 (1082)
Q Consensus 781 ~----------------------------------------~-~~~~~~-i------------~~l~~s~dg~~l~~--- 803 (1082)
. + .+|... | .+=-|..+.+.+|+
T Consensus 520 Pe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 520 PEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLA 599 (1012)
T ss_pred CCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEec
Confidence 0 0 000000 0 00012223344443
Q ss_pred eeCCeEEEEecCCC-eeEE-EECC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-------eeeeeecccccC
Q 001415 804 ASGGKISLFNMMTF-KTMA-TFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-------EVKSKLKGHSKR 872 (1082)
Q Consensus 804 ~sdg~i~iwd~~~~-~~~~-~~~~--~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~ 872 (1082)
|+.|.|.||++... +..- .+.+ ....|+.+.|.|-|...||++++||.|++|.+..+ ..-..+.+|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 34688999998742 2211 1111 23469999999999999999999999999999764 344678899999
Q ss_pred EEEEEEeCC-CCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccC
Q 001415 873 ITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 950 (1082)
Q Consensus 873 V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~ 950 (1082)
|+++.|+|- ...|++++.|.+|++||+.+.. ....+.+|. ..|..++|||||+.+|+ +.||.|++|..++
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 999999985 4689999999999999999854 344566777 68999999999999999 8999999999887
Q ss_pred cceeeeeccCCCCcceeEEEEcCCCceEEEeecCC----cEEEEecCCcee--eeeeCCCeecCCCCCCCCceeeEEEEe
Q 001415 951 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAH 1024 (1082)
Q Consensus 951 ~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg----~v~vwd~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~~~~~ 1024 (1082)
++....-....-..+-..|.|.-||+++++.+.|. .|.+||..+... +.... + . ....++.-.|.
T Consensus 752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~----l--D---vaps~LvP~YD 822 (1012)
T KOG1445|consen 752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV----L--D---VAPSPLVPHYD 822 (1012)
T ss_pred CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee----e--c---ccCcccccccc
Confidence 65432211101123334567888999998887664 588998876442 22111 0 0 00112233455
Q ss_pred CCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1025 PQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1025 ~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
++.+-++++|-.|..|.+|++.-.+
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCCC
Confidence 5556678899999999999987665
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1e-26 Score=261.17 Aligned_cols=304 Identities=17% Similarity=0.242 Sum_probs=241.5
Q ss_pred cccceeEEEEccCCceeeecc--cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415 718 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 795 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 795 (1082)
+...|.++..+|+|..+++++ .|+.+++|+.+.-... ...++..-.+ .......|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------~~~~~~~l~k---~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------KEEKNENLPK---HLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch----------hhhhhcccch---hheeeccccCceeEEEEC
Confidence 455689999999999999999 8999999987532110 0111221011 111122489999999999
Q ss_pred cCCCeEEEeeC-CeEEEEecCC------------------CeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 796 KNDSYVMSASG-GKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 796 ~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
|||++||+|+| ..|.||.... .+++..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 99999999996 6689998762 246778999999999999999 999999999999999999
Q ss_pred cccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415 857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 936 (1082)
Q Consensus 857 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 936 (1082)
..+.+++.++++|.+.|-.+.|.|-|+||||-+.|++|+||++.+... .+.+..+..+.+.......+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeec
Confidence 999999999999999999999999999999999999999999777443 233444444444445678999999999999
Q ss_pred E--Eec---CeEEEEEccCcceeeeeccCCCCcceeEEEEcCC--------C-----c----eEEEeecCCcEEEEecCC
Q 001415 937 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD--------S-----Q----LVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 937 ~--~~d---~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~d--------g-----~----~l~t~s~dg~v~vwd~~~ 994 (1082)
+ +.. ..+.|.+-.+.+.-..+. ||..++.+++|+|. | . .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9 333 357888776666666665 89999999999981 1 1 588999999999999988
Q ss_pred ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 995 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 995 ~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
.+.+..+. .-.. ..++.++|+| ||..|.+++.||+|.+..++..|
T Consensus 314 ~RPl~vi~-------~lf~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFN--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh-------hhhc--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 88776544 1112 3456999999 69999999999999999998877
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=214.12 Aligned_cols=278 Identities=17% Similarity=0.263 Sum_probs=232.3
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-C
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D 431 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 431 (1082)
.+.+|...|.+++|+-+|.+ ||+|+.|+++.+|+++..+.+... ...+|.+.|-.++|+| .
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred HhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCC
Confidence 45568999999999999997 999999999999999887544321 3789999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
...+|+++.|.+|++||+..+++... ... .+.=..+.|+|+|. +++.++.|..|.+.|.++.+.+...+ ..-.
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~---i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e 149 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTAR---IET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFE 149 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEE---eec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccce
Confidence 77999999999999999999998763 322 33445689999999 79999999999999999888776655 4456
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
+.-++|+.++ .+++.....|.|.|-.....+++..+..|...+.++.|+|+|+ +|++
T Consensus 150 ~ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr---------------------yfA~ 206 (313)
T KOG1407|consen 150 VNEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR---------------------YFAT 206 (313)
T ss_pred eeeeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc---------------------eEee
Confidence 7778887444 5677777789999999999899999999998888888888777 8999
Q ss_pred EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccccc
Q 001415 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
|+.|..+.+||+..--+++.+....- +|+.+.|+-||++||+++.|..|-|=++.+|.
T Consensus 207 GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd-------------------- 264 (313)
T KOG1407|consen 207 GSADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETGD-------------------- 264 (313)
T ss_pred ccccceeeccChhHhhhheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccCC--------------------
Confidence 99999999999999888888876544 79999999999999999999999888887773
Q ss_pred CCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415 672 KNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 740 (1082)
Q Consensus 672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 740 (1082)
++|++. +.++...++|+|....|+.++.|
T Consensus 265 -----------------------~~~eI~-----------------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 265 -----------------------RVWEIP-----------------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred -----------------------eEEEee-----------------ccCCceeEEecCCCceeeEEecC
Confidence 344443 56677889999999988887776
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=253.84 Aligned_cols=276 Identities=14% Similarity=0.217 Sum_probs=214.0
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeecccccc---------------CCCC--------------Cccc------c
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSG--------------KATA------S 762 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~---------------~~~~--------------~~~~------~ 762 (1082)
|.+.|.++.|++||++||++|.|+.|+||.+..... ...+ .... .
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 899999999999999999999999999999876210 0000 0000 0
Q ss_pred cCccccCCCCcc-eeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCc
Q 001415 763 VAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 841 (1082)
Q Consensus 763 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 841 (1082)
.. .+.+..... .........+|...|..+.||.++-+|-+.-|.+|++|++....++..|. |...|||++|+|.|.+
T Consensus 346 ~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 346 PC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred cc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 00 011111111 11111122359999999999998855555559999999999999999998 9999999999999999
Q ss_pred EEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCC
Q 001415 842 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 921 (1082)
Q Consensus 842 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 921 (1082)
++++|+-||.||||++...+.+.-...+ .-|++++|+|||++.+.|+-+|.+++|+....+.....-+....+......
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999999999999999987765544444 789999999999999999999999999999877666555555554444445
Q ss_pred CCcEEEEcCCC--cEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415 922 SDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 996 (1082)
Q Consensus 922 ~v~~~~fspdg--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~ 996 (1082)
.|+.+.|.|.. +.|+++.|..|+|||..+...+..|........-....|+.||++|+++++|..|+||+.....
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 79999999754 4888899999999999888888888743334445667899999999999999999999985444
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=235.55 Aligned_cols=297 Identities=20% Similarity=0.286 Sum_probs=219.0
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeE-EEEee-ccccCeeEEEecCCCCceEEEEEeCCCcEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~-~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~v 493 (1082)
+.+|+..|+++++.|.|..|++|+.|.+|++||+.....-.+ ...+. .....|.++.||+.|.++++++| ....+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqakl 240 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAKL 240 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--CcceeE
Confidence 789999999999999999999999999999999986532111 11121 23457999999999996444444 567899
Q ss_pred EEccCCceeEE-------------eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeee-cCCCCceEEE
Q 001415 494 WDATNGAKQYI-------------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTM 559 (1082)
Q Consensus 494 wd~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~ 559 (1082)
+| +.|..+.. -+||...+++.+|+|... ..+++++.||++|+||+......... .....
T Consensus 241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~----- 313 (641)
T KOG0772|consen 241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA----- 313 (641)
T ss_pred Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccC-----
Confidence 99 55544433 248999999999999776 57999999999999999875543321 11100
Q ss_pred EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce---EEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001415 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1082)
Q Consensus 560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 636 (1082)
+...-.+..++|+++++.+++|+.||.|.+|+...... ...-..|.....|++++||+||++|++-
T Consensus 314 -----------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 314 -----------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred -----------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 01112455667777777999999999999999754321 2233455555589999999999999999
Q ss_pred ECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCc
Q 001415 637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 716 (1082)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 716 (1082)
+.|+++++||++..++++....+..
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~------------------------------------------------------- 407 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLP------------------------------------------------------- 407 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCC-------------------------------------------------------
Confidence 9999999999987644433222110
Q ss_pred ccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415 717 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 796 (1082)
Q Consensus 717 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 796 (1082)
....-+.++|||
T Consensus 408 --------------------------------------------------------------------t~~~~tdc~FSP 419 (641)
T KOG0772|consen 408 --------------------------------------------------------------------TPFPGTDCCFSP 419 (641)
T ss_pred --------------------------------------------------------------------ccCCCCccccCC
Confidence 122234566777
Q ss_pred CCCeEEEee-------CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 797 NDSYVMSAS-------GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 797 dg~~l~~~s-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
+.++|++|. .|.+.+||..+...+..+.-....|..+.|+| .-+.|.+|+.||.+++|-
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEE
Confidence 777777764 25799999999999999988888999999999 777888899999999874
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=245.84 Aligned_cols=253 Identities=19% Similarity=0.262 Sum_probs=209.0
Q ss_pred CCCCce---EEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415 357 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1082)
Q Consensus 357 h~~~v~---~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1082)
|...|. ++..++.+.++|++|+.||.|++|++..-.... +.+... .+..|.+.|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~a-sme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYIA-SMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchhh-hhhhhHhHHhhHHhhcCCC
Confidence 455555 555665555469999999999999986543221 111111 3778999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEe-cCCCCceEEEEEeCCCcEEEEEccCCc--eeEE------
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQYI------ 504 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~f-s~dg~~~~l~s~s~d~~i~vwd~~~~~--~~~~------ 504 (1082)
.|++++.|-+|++|+...+. .....++..|.+.|.|++. .++.. ++||||-|+.|.+||+.+|. .+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 1122378899999999999 66666 89999999999999999873 3322
Q ss_pred --ee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 505 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 505 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
+. |+...|++++..+ .|..+++|+..+.+++||.++......+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 23 7888999998654 447899999999999999999999999999999888888888877
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
++++++.||+|++||+...+++.++..|.. .+.++..+|+=..+++|+.||.|..=|+++.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 799999999999999999999999988876 5899999999999999999999998888765
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=221.90 Aligned_cols=303 Identities=15% Similarity=0.247 Sum_probs=231.7
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEE
Q 001415 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVW 697 (1082)
Q Consensus 618 ~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw 697 (1082)
..++.+.+|++||.++++|+.|.+|+|.|+..... + - .+.. +..+..+..
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermla--k-s-~~~e----------------------m~~~~~qa~---- 161 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLA--K-S-KPKE----------------------MISGDTQAR---- 161 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh--h-c-chhh----------------------hccCCcccC----
Confidence 34788999999999999999999999999863211 0 0 0000 001110000
Q ss_pred EecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415 698 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777 (1082)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1082)
...++. +-. |...|..+.|+|....|++++.|+++++||+....... ..++
T Consensus 162 -------hPvIRT--lYD--H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K~---------- 212 (430)
T KOG0640|consen 162 -------HPVIRT--LYD--HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFKV---------- 212 (430)
T ss_pred -------CceEee--hhh--ccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHHH----------
Confidence 000111 111 88999999999999999999999999999986432110 0011
Q ss_pred cccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCCeeEEEE---CCCCCCeeEEEEecCCCcEEEEEeCCCcEE
Q 001415 778 NDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 853 (1082)
Q Consensus 778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasg~~dg~v~ 853 (1082)
+ ....+|.++.|+|.|.+|++|.| ..+++||+.+.++...- ..|.+.|+++.+++ .+++.++|+.||.|+
T Consensus 213 --~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 213 --F---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIK 286 (430)
T ss_pred --h---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEE
Confidence 1 14678999999999999999997 78999999998887654 35778899999999 999999999999999
Q ss_pred EEecccceeeeeec-ccc-cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCC--CCCcEEEEc
Q 001415 854 IYNVRVDEVKSKLK-GHS-KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFH 929 (1082)
Q Consensus 854 iwd~~~~~~~~~l~-~h~-~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~fs 929 (1082)
+||--+++|+.++. +|. ..|.+..|..+|+++++.+.|..+++|.+.++.. +....|...+. .--+...|.
T Consensus 287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHRTQAVFN 361 (430)
T ss_pred eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhhhhhhhc
Confidence 99999999998885 564 4799999999999999999999999999999654 33333221100 122556677
Q ss_pred CCCcEEEEE--ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEe
Q 001415 930 QDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 991 (1082)
Q Consensus 930 pdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd 991 (1082)
....+++.- ..+.++-||.+++..+..+.. +|.+.+..+.-||.+.-+++++.|-.+++|-
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 777777773 346899999999988887775 8999999999999999999999999999995
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=215.55 Aligned_cols=287 Identities=18% Similarity=0.271 Sum_probs=225.2
Q ss_pred eEEEEecC--CCeEEEEEcC-----CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-CC
Q 001415 362 MSMDFHPV--QQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GS 433 (1082)
Q Consensus 362 ~~~~~spd--g~~llasgs~-----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 433 (1082)
.++.|||- ++..+|++.. .|++.|-++..++.+.. ++.+| -.+.+..++||+. ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence 67889994 4422333322 58899999975554432 22222 3558999999994 56
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeE
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 513 (1082)
.+++++.||+++|||+.-. -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888899999999995432 2345578899999999999998776 677779999999999999999999999999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
...|+|... +++++++.|+++++||++.......+..|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999998754 6999999999999999998877777777777777777765543 3688999
Q ss_pred CCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeeccccccccccccccc
Q 001415 594 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1082)
Q Consensus 594 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
.|+.|++||++.-+ ++..+.+|+ -.|+.+.||| ....|++++.|-+++|||...+...+.....|..-+. .+.|
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~--g~Dw 286 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC--GLDW 286 (311)
T ss_pred CCceEEEEehhhccccceeecCCc--eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe--cccc
Confidence 99999999998654 466665554 4799999999 4578999999999999999877677777776665544 2333
Q ss_pred CCCCccccCCCCceeeeccCCceeEEEe
Q 001415 672 KNGDVRSLADVKPRITEESNDKSKVWKL 699 (1082)
Q Consensus 672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~ 699 (1082)
. .-++..+++.+.|+.+++|+.
T Consensus 287 -----s-~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 -----S-LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----c-cccCceeeecccccceeeecc
Confidence 1 227788999999999999984
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.3e-25 Score=212.84 Aligned_cols=289 Identities=14% Similarity=0.163 Sum_probs=228.4
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
....|.++.|+++|..+++++.|..+++||... |+...... .+...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~ti~---skkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKTIN---SKKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeEee---cccccccEEEEecC
Confidence 467899999999999999999999999987653 33222211 14567888889877
Q ss_pred CCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415 798 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 874 (1082)
Q Consensus 798 g~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 874 (1082)
...++.++ |.+|+..++.+.+.++.+.||...|++++.+| .+..+++++.|++|++||++..++...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77666665 67899999999999999999999999999999 7789999999999999999988888777654444
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcce
Q 001415 875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 953 (1082)
Q Consensus 875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~ 953 (1082)
.+||.|.|-++|++.....|++||++..............+. ......+.|||||++|+.+ ..+.+++.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND---EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC---ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 478999999999998888999999998655443333333222 2567999999999999985 567899999999998
Q ss_pred eeeeccCCCCc-ceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEE
Q 001415 954 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1032 (1082)
Q Consensus 954 ~~~~~~~~h~~-~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~ 1032 (1082)
...+....... --.+.+|+||++++++|+.||+|.+|++++|+.+.++... . . ....++.|+| .+..
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----~---~--~~~~~~~fnP---~~~m 289 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----N---G--GPVSCVRFNP---RYAM 289 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC----C---C--CCccccccCC---ceee
Confidence 88877433222 2357899999999999999999999999999999988821 1 1 2233677998 3555
Q ss_pred EEecCCcEEEEccCCCC
Q 001415 1033 LGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1033 s~~~dg~v~vW~~~~~~ 1049 (1082)
.++.+..+.+|=+...+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 55668899999777554
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=7e-26 Score=253.54 Aligned_cols=283 Identities=18% Similarity=0.306 Sum_probs=241.1
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
.|...+.|..|. ++ .+++|+.|++|++||..++..+.. .+.||.+.|++++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 368899999999 55 489999999999999999988874 278999999999998888999
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 515 (1082)
++|+.|.++++||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 78899999999987543 68999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
..+ +.++++|+.|++|++||+.+.+.+..+.+|...|.++.+... . ++++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~---------------------~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N---------------------RLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c---------------------eEEeeeec
Confidence 875 358999999999999999999999999999999998877653 2 69999999
Q ss_pred CeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc-cccccccccccCC
Q 001415 596 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL-AYDASRTSENSKN 673 (1082)
Q Consensus 596 g~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 673 (1082)
++|++||+.++ +++..+..|... + -.+...+++|++++.|+.|++||..++ .+.+.+.+. ...+. .+++
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~--~l~~-- 462 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVS--ALAL-- 462 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccc--c--cccccccceeEeccccccEEEeecccC-ceeeeeccCCcccEE--Eeec--
Confidence 99999999999 999999887662 3 334456889999999999999999998 667777663 33322 2222
Q ss_pred CCccccCCCCceeeeccCCceeEEEecccCCCCcc
Q 001415 674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 708 (1082)
Q Consensus 674 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 708 (1082)
....++.++.++.+++||+..+......
T Consensus 463 -------~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 463 -------GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred -------CcceEEEEecCCeeEEEecccCchhhhh
Confidence 1478899999999999999876554433
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.8e-27 Score=233.78 Aligned_cols=285 Identities=19% Similarity=0.328 Sum_probs=232.2
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+.+.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 77899999999999999999999999999999998876 223337888889999999999999 789999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
+.+.+...++.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+..+.. ....+..+..+
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~------------- 311 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS------------- 311 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec-------------
Confidence 99999999999999999999986544 349999999999999998754443322 12222222222
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
...+++|-.|+.|++||+++..+......++ .|+++..+++|..|.+.+.|..+.+.|+++. ....
T Consensus 312 ----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~ 377 (459)
T KOG0288|consen 312 ----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQ 377 (459)
T ss_pred ----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEEE
Confidence 1247778899999999999999999988766 4899999999999999999999999988765 1111
Q ss_pred ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415 656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 735 (1082)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 735 (1082)
.+ +..|-.
T Consensus 378 ~~----------------------------------------------------------------------sA~g~k-- 385 (459)
T KOG0288|consen 378 TF----------------------------------------------------------------------SAEGFK-- 385 (459)
T ss_pred Ee----------------------------------------------------------------------eccccc--
Confidence 11 111100
Q ss_pred ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec
Q 001415 736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 814 (1082)
Q Consensus 736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~ 814 (1082)
.....+.+.|||++.|+++|+ ||.|+||++
T Consensus 386 -------------------------------------------------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 386 -------------------------------------------------CASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred -------------------------------------------------cccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 122367889999999999997 899999999
Q ss_pred CCCeeEEEECCCCC--CeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415 815 MTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 855 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasg~~dg~v~iw 855 (1082)
.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 417 ~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 417 FTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 99999988876544 499999999 89999999999999999
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.4e-26 Score=254.78 Aligned_cols=318 Identities=18% Similarity=0.271 Sum_probs=225.9
Q ss_pred CCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
++..|.+++.+|||.. +|||+ .||.++||+.+.=-. ....++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3567999999999995 99999 899999999753110 01111111 22233347789999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC
Q 001415 435 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~----------~-----~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~ 499 (1082)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. +||+++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234557889999999999999999 8999999999999999999
Q ss_pred ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC------CceEEEEEccCCCeeeeccc
Q 001415 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG------RWCTTMAYSADGTRTYQGFR 573 (1082)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~~~~~~~ 573 (1082)
+.+.++.+|.+.|..+.|.|. |+++++-+.|++|++|+..+-.....++.+- ..+..+.|||||.
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~------- 232 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH------- 232 (942)
T ss_pred eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-------
Confidence 999999999999999998654 5899999999999999976644444444332 2344555555555
Q ss_pred ccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415 574 KRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
+|++.. .-.++.|.+-.+-+.-..+-+|.. ++.+++|+|. |+-.-.. +
T Consensus 233 --------------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~---lfe~~~~---------n 284 (942)
T KOG0973|consen 233 --------------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPK---LFERNNK---------N 284 (942)
T ss_pred --------------eecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeChH---Hhccccc---------c
Confidence 666532 344677877766666666766655 8899999982 0000000 0
Q ss_pred CccceeecccccccccccccccCCCCccccCC--CCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEE
Q 001415 650 GIRLLRTFENLAYDASRTSENSKNGDVRSLAD--VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 727 (1082)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 727 (1082)
|... .++ -..+++|+.|+++.||......+...+..+ ....|.+++|
T Consensus 285 g~~~-------------------------~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l------f~~SI~DmsW 333 (942)
T KOG0973|consen 285 GTST-------------------------QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL------FNKSIVDMSW 333 (942)
T ss_pred CCcc-------------------------CCCcceEEEEEecCCccEEEEecCCCCchhhhhhh------hcCceeeeeE
Confidence 0000 000 013456666666666665433322222222 5677889999
Q ss_pred ccCCceeeecccCCeEEEeeccccc
Q 001415 728 TNSGNAILALASNAIHLLWKWQRTE 752 (1082)
Q Consensus 728 s~~~~~l~~~~~d~~i~iw~~~~~~ 752 (1082)
+|||-.|++++.||+|.+..++..+
T Consensus 334 spdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999887654
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2e-25 Score=213.94 Aligned_cols=248 Identities=17% Similarity=0.209 Sum_probs=194.2
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEcccc-ceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
...+.|.+++|||....++++||-||+|++|+++.. .... +....|.++|.+++||.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 367999999999977778889999999999999763 3222 246789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 514 (1082)
+++|+.|+.+++||+.+++.. .+..|.++|.++.|-+......|+|||.|++|+.||+++..++.++. -.+++++
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 999999999999999999644 47789999999999887665589999999999999999999999887 5577887
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1082)
+..-. .+++.+..++.|.+++++++........ . | -+..+++++...+....+.|+-
T Consensus 162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~--S--------p---------Lk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIE--S--------P---------LKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhc--C--------c---------ccceeeEEEEEecCCceEeeee
Confidence 76432 4788899999999999976543331111 0 0 0113445555555556789999
Q ss_pred CCeEEEEECCCc--ceEEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415 595 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 595 dg~i~iwd~~~~--~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
+|.+-|..+..+ +.-..++.|.. ...|++++|+|.-..|++++.||++.+||-..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 999999988876 33344444432 33577899999888899999999999998643
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=249.33 Aligned_cols=287 Identities=18% Similarity=0.275 Sum_probs=237.6
Q ss_pred CCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc
Q 001415 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1082)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~ 497 (1082)
.|...+.+..|. +.++++++.+.+|++||..++..+.. .+.||.+.|++++|...+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 467789999998 67899999999999999999887662 3899999999999987555 79999999999999999
Q ss_pred CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccce
Q 001415 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1082)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i 577 (1082)
+|.+.+++.+|.+.|.++...+ .++++|+.|.+|++|++.++.....+.+|..+|.++...
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 9999999999999999987532 578889999999999999988888888888888888776
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeec
Q 001415 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1082)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1082)
+..+++|+.|++|++||+.+++++..+.+|.+ .|.++.+... ..+++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 22799999999999999999999999998766 7999888765 899999999999999998763232222
Q ss_pred ccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeec
Q 001415 658 ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 737 (1082)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 737 (1082)
.+|
T Consensus 410 ~~h----------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 410 QGH----------------------------------------------------------------------------- 412 (537)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 221
Q ss_pred ccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCC
Q 001415 738 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 816 (1082)
Q Consensus 738 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~ 816 (1082)
..-+.++. ..+++|++++ |++|++||..+
T Consensus 413 ------------------------------------------------~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 413 ------------------------------------------------TSLVSSLL--LRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ------------------------------------------------cccccccc--cccceeEeccccccEEEeeccc
Confidence 11111111 2455777776 78999999999
Q ss_pred CeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccc
Q 001415 817 FKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 870 (1082)
Q Consensus 817 ~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 870 (1082)
+++++++.+ |...|.++++. ...+++++.||.+++||+.++++...+-.+.
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred CceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 999999998 66888888886 3478889999999999999999888774443
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.7e-26 Score=233.85 Aligned_cols=299 Identities=18% Similarity=0.269 Sum_probs=220.0
Q ss_pred cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCC
Q 001415 679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 758 (1082)
Q Consensus 679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 758 (1082)
.|.|.++++|+.|..|++||+..+.........-.|. ....|.++.|++.|..|++.+...+.+++|-
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR---------- 243 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDR---------- 243 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEcc----------
Confidence 8999999999999999999999876544332222222 5667888999999988888888877777642
Q ss_pred cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecC
Q 001415 759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 838 (1082)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 838 (1082)
||..++-...|.-+|-|+. .-++|...++|.+|+|.
T Consensus 244 --------------------------------------dG~~~~e~~KGDQYI~Dm~------nTKGHia~lt~g~whP~ 279 (641)
T KOG0772|consen 244 --------------------------------------DGFEIVEFSKGDQYIRDMY------NTKGHIAELTCGCWHPD 279 (641)
T ss_pred --------------------------------------CCceeeeeeccchhhhhhh------ccCCceeeeeccccccC
Confidence 3333333333333333432 34578889999999998
Q ss_pred CCcEEEEEeCCCcEEEEecccce-eeeeec-----ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeec
Q 001415 839 DNNIIAIGMDDSSIQIYNVRVDE-VKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 912 (1082)
Q Consensus 839 ~~~~lasg~~dg~v~iwd~~~~~-~~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 912 (1082)
....+.+++.||++||||+...+ .+..++ +..-+++.++|++||+++|.|+.||.|.+|+..+.... .....
T Consensus 280 ~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~--p~~~v 357 (641)
T KOG0772|consen 280 NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR--PVMKV 357 (641)
T ss_pred cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--cceEe
Confidence 88899999999999999998643 233332 34457899999999999999999999999998553322 22233
Q ss_pred cCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc-eeeeeccCCCCcceeEEEEcCCCceEEEeec------C
Q 001415 913 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------D 984 (1082)
Q Consensus 913 ~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~------d 984 (1082)
...|.. ...|++|.||+||++|++ +.|+.+++||++..+ ++..+..-....+-+.++||||.++|++|.. .
T Consensus 358 k~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 358 KDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTA 436 (641)
T ss_pred eeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCC
Confidence 333432 147999999999999999 999999999998654 3433332122456678999999999999873 4
Q ss_pred CcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEE-ccCC
Q 001415 985 ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF-EPLE 1047 (1082)
Q Consensus 985 g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW-~~~~ 1047 (1082)
|++.+||..+...+..+... . ..++.+.|+|. =+.+.+|+.||+++++ |...
T Consensus 437 g~L~f~d~~t~d~v~ki~i~----~------aSvv~~~Whpk-LNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 437 GTLFFFDRMTLDTVYKIDIS----T------ASVVRCLWHPK-LNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred ceEEEEeccceeeEEEecCC----C------ceEEEEeecch-hhheeeecCCCceEEEECccc
Confidence 78999999999999988722 1 34558999995 4667788889998875 4433
No 96
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=215.32 Aligned_cols=296 Identities=15% Similarity=0.278 Sum_probs=239.6
Q ss_pred ceee-ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415 350 TVTR-TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1082)
Q Consensus 350 ~~~~-~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1082)
.+.+ +.+|++.||.++...... ++.+++.|.+-+||.+++|.++.+ +.||.+.|++++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 3444 445999999999887777 799999999999999999999985 8899999999999
Q ss_pred ecCCCeEEEEeCCCeEEEEEc------cC--------C-----------------------ceeeEEEEeeccccCeeEE
Q 001415 429 SPDGSLFGVAYSRHIVQIYSY------HG--------G-----------------------DEVRQHLEIDAHVGGVNDI 471 (1082)
Q Consensus 429 spdg~~las~~~d~~v~iwd~------~~--------~-----------------------~~~~~~~~~~~h~~~V~~l 471 (1082)
++.+.++++++.|++..||.. .. + ..-.++..+.+|.+.|.+.
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 999999999999999999951 11 0 0012355788999999999
Q ss_pred EecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC-ceeeec
Q 001415 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYE 550 (1082)
Q Consensus 472 ~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~ 550 (1082)
.|-..|+ -+++++.|.+..+||+++|..+..+.||....+.++-+|.. .++++.+.|.+.++||++..- ....+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 59999999999999999999999999999999999887655 789999999999999998432 234677
Q ss_pred CCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCC
Q 001415 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKD 629 (1082)
Q Consensus 551 ~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~d 629 (1082)
+|...|+++.|..|.+ +++|+.|.+|++||++... ++.++.... +++.++.+..
T Consensus 355 GHtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g 409 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKG 409 (481)
T ss_pred ccccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecC
Confidence 7888888888777664 9999999999999998654 566665443 5788999998
Q ss_pred CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccc
Q 001415 630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 709 (1082)
Q Consensus 630 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 709 (1082)
+..++.-..+..|++||++.. ++.+..+
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~-RlaRlPr--------------------------------------------------- 437 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGN-RLARLPR--------------------------------------------------- 437 (481)
T ss_pred CceEEeccCCceEEEEecCCC-ccccCCc---------------------------------------------------
Confidence 889999989999999998654 2211110
Q ss_pred cccccCcccccceeEEEEccCC--ceeeecccCCeEEEeecc
Q 001415 710 SLRLPENLRATKISRLIFTNSG--NAILALASNAIHLLWKWQ 749 (1082)
Q Consensus 710 ~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~ 749 (1082)
...++|..-|.+++|..+- .-|++++-|..+.-|++.
T Consensus 438 ---tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 438 ---TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ---ccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 0012367778888887543 358899999999999765
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=213.96 Aligned_cols=307 Identities=16% Similarity=0.241 Sum_probs=221.8
Q ss_pred EEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeecc
Q 001415 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEES 690 (1082)
Q Consensus 611 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 690 (1082)
.+++|.. .|++++|+.||++|++++.|+.|++|++.+-.. +.|.... .
T Consensus 81 ~LKgH~~--~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~R------~------------------- 128 (420)
T KOG2096|consen 81 VLKGHKK--EVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCIR------Q------------------- 128 (420)
T ss_pred hhhccCC--ceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHhh------c-------------------
Confidence 3444544 899999999999999999999999999876311 1111000 0
Q ss_pred CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeee-cccCCeEEEeeccccccCCCCCcccccCccccC
Q 001415 691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 769 (1082)
Q Consensus 691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 769 (1082)
.+ ..+..+.+.|.||-+.+++ +.....+++|.+....- |..... ..-||
T Consensus 129 ---------------------nv----e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D 178 (420)
T KOG2096|consen 129 ---------------------NV----EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHID 178 (420)
T ss_pred ---------------------cc----cCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccc
Confidence 00 2235567888888765544 44456888887653221 111110 01122
Q ss_pred CCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC
Q 001415 770 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 848 (1082)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~ 848 (1082)
-. .. ...|.-.+..+-...++++|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++.
T Consensus 179 ~~--~f------~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gF 248 (420)
T KOG2096|consen 179 NL--EF------ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGF 248 (420)
T ss_pred cc--cc------chhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecC
Confidence 10 00 012566677777778899999998 6779999999 899998887777788899999 9999999999
Q ss_pred CCcEEEEecc---cc-----eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc--eeeeccCCC-C
Q 001415 849 DSSIQIYNVR---VD-----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN--RFLQIPTGR-T 917 (1082)
Q Consensus 849 dg~v~iwd~~---~~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~~~~~~~~-~ 917 (1082)
.-.|++|.+- .| ..+..|+||.+.|.+++||++...+++++.||++++||++-...... ..+...... .
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~ 328 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLH 328 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchh
Confidence 9999999873 22 34467899999999999999999999999999999999875322111 111111000 0
Q ss_pred CCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEe
Q 001415 918 PTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 991 (1082)
Q Consensus 918 ~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd 991 (1082)
...+....++++|.|+.||.+....+++|..++|+....+. ..|+..|.+++|++||+++++++ |..++|+.
T Consensus 329 aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 329 AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 01133468999999999999999999999999998887776 37899999999999999999986 78888865
No 98
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.4e-24 Score=243.58 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=200.7
Q ss_pred ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec-C
Q 001415 719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 797 (1082)
Q Consensus 719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d 797 (1082)
...|.....++++..+++++.+.....|+..... ..++....|+.........+|...|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3445556677787778888888888888654221 11223333332221111234999999999999 8
Q ss_pred CCeEEEee-CCeEEEEecCCC-------eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc
Q 001415 798 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 869 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 869 (1082)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++.+|++|+.|+.|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 88999997 799999999764 3567889999999999999954579999999999999999999999999999
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E----ecCeEE
Q 001415 870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 944 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~----~d~~i~ 944 (1082)
...|.+++|+|+|.+|++++.|++|++||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998653 222334432 22456789998888776 3 368999
Q ss_pred EEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEee-cCCcEEEEecCCceeeeeeC
Q 001415 945 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 945 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
+||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++++....
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 99998765432222112345667778999999999887 59999999999998776543
No 99
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.4e-26 Score=213.58 Aligned_cols=251 Identities=13% Similarity=0.263 Sum_probs=210.0
Q ss_pred eeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-
Q 001415 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1082)
Q Consensus 352 ~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1082)
.+.+.-.+.+..++||+.....+++++.||+++|||...... +-..++.|..+|.++.|++
T Consensus 54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccc
Confidence 344556789999999999888899999999999999533211 1124889999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
+++.+++++-|++|++|+...+..++ ++.||...|...+|+|.... +++++|.|+++++||++.......+..|..
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~ 191 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNS 191 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccc
Confidence 67778888999999999999888776 89999999999999998777 899999999999999987555555899999
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1082)
.+.++.|+.... ..+++|+.|+.|+.||++..+. +..+.+|+-.|+.+.|||... ..|
T Consensus 192 Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~lL 250 (311)
T KOG0277|consen 192 EILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SLL 250 (311)
T ss_pred eeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hHh
Confidence 999999976544 7999999999999999998654 457788888899999988765 258
Q ss_pred EEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEe
Q 001415 590 LAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 647 (1082)
Q Consensus 590 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~ 647 (1082)
++++.|-+++|||...+ .++.+...|.. .+..+.|++ ++.++|+.+-|+.++||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence 89999999999998743 45556665554 578888988 7889999999999999974
No 100
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=7e-25 Score=245.91 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=197.6
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCeE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1082)
|-..|....+++|+.. +++++.+.....|+...+..+. +.-.....+.....+.+|.+.|++++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4466777888899774 6777778888899876654322 11111111112234789999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCce----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 436 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
|+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1233468899999999999998744 7999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
|.+++|+++ +.+|++++.|+.|++||++++.....+..|.... ...+.|.+++..+++
T Consensus 171 V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence 999999864 4799999999999999999876655555444321 122334444446666
Q ss_pred Ee----CCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEecCCc
Q 001415 592 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGI 651 (1082)
Q Consensus 592 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~iwd~~~~~ 651 (1082)
++ .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 44 47999999998754 333333222 22455567899999999887 59999999998873
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=209.28 Aligned_cols=314 Identities=15% Similarity=0.191 Sum_probs=211.5
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCc-----eeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~-----~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~ 489 (1082)
.+++|.+.|++++||.||++||+++.|++|+||++..-. +++... .-+-.+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccCC
Confidence 589999999999999999999999999999999997532 222111 1224678999999986 566666667
Q ss_pred cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeee
Q 001415 490 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1082)
Q Consensus 490 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~ 569 (1082)
++++|.+...+. ....-|.-.+-.+.|.. .|...+..
T Consensus 156 ~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~-------------------------------kh~v~~i~----------- 192 (420)
T KOG2096|consen 156 KLCVYKLVKKTD-GSGSHHFVHIDNLEFER-------------------------------KHQVDIIN----------- 192 (420)
T ss_pred EEEEEEeeeccc-CCCCcccccccccccch-------------------------------hcccceEE-----------
Confidence 788887542221 00000100010011100 01111111
Q ss_pred ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
+-....+.++++++.|..|.+|++. |+.+..+..... .-...+.||+|+++++++-...|++|.+--
T Consensus 193 ----------iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 193 ----------IGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred ----------EeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 1122233478899999999999998 888887765433 456789999999999999999999997532
Q ss_pred CccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc
Q 001415 650 GIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN 729 (1082)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 729 (1082)
++ .+.-. ...+++. +. +|...|..++|++
T Consensus 260 ~k------dG~fq-----------------------------ev~rvf~--------------Lk--GH~saV~~~aFsn 288 (420)
T KOG2096|consen 260 TK------DGTFQ-----------------------------EVKRVFS--------------LK--GHQSAVLAAAFSN 288 (420)
T ss_pred cc------Ccchh-----------------------------hhhhhhe--------------ec--cchhheeeeeeCC
Confidence 20 00000 1112222 22 2999999999999
Q ss_pred CCceeeecccCCeEEEeeccccc-cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCe
Q 001415 730 SGNAILALASNAIHLLWKWQRTE-RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 808 (1082)
Q Consensus 730 ~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~ 808 (1082)
+..++++.+.||.+++||.+..- ...+.+.+. +|. ..+. ........++++|.|+.||.+....
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk----------~g~---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~ 353 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK----------EGS---APLH--AAGSEPVRLELSPSGDSLAVSFGSD 353 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhh----------cCC---cchh--hcCCCceEEEeCCCCcEEEeecCCc
Confidence 99999999999999999986431 111111111 110 0010 1233344899999999999999899
Q ss_pred EEEEecCCCeeEEEEC-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEec
Q 001415 809 ISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 857 (1082)
Q Consensus 809 i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 857 (1082)
++++..++++....+. .|...|.+++|++ +|+++|+++ |..++++.-
T Consensus 354 l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 354 LKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred eEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 9999999988776664 5788899999999 999999886 678888763
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-25 Score=235.85 Aligned_cols=277 Identities=18% Similarity=0.243 Sum_probs=235.4
Q ss_pred eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC
Q 001415 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1082)
Q Consensus 362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1082)
+-+.||..+ +||+|. ...|++|+..++..... ..-+...|+++.|+++|++||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 446788655 477664 56899999999886542 22337899999999999999999999
Q ss_pred CeEEEEEccCCceeeEEEEeec-cccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE-eecCCcCeEEEeeee
Q 001415 442 HIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHH 519 (1082)
Q Consensus 442 ~~v~iwd~~~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~ 519 (1082)
|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999888776 6777 99999999998 44 689999999999999998876655 889999999999976
Q ss_pred cCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe--CCCe
Q 001415 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFS 597 (1082)
Q Consensus 520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~ 597 (1082)
+. .++++|+.|+.+.|||.....+...+..|...|..++|+|-.. ..||+|+ .|+.
T Consensus 312 d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 312 DG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRC 369 (484)
T ss_pred CC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccE
Confidence 54 7999999999999999998899999999999999999998754 3577754 7999
Q ss_pred EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEE--ECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD 675 (1082)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1082)
|++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. .....+.+|...+. .+++
T Consensus 370 i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl--~la~---- 439 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTSRVL--YLAL---- 439 (484)
T ss_pred EEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcceeE--EEEE----
Confidence 9999999999999887654 49999999988766654 45778999999886 77888889988866 5666
Q ss_pred ccccCCCCceeeeccCCceeEEEeccc
Q 001415 676 VRSLADVKPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~ 702 (1082)
+|||..+++++.|.++++|++-..
T Consensus 440 ---SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 ---SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999998753
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-24 Score=208.12 Aligned_cols=242 Identities=21% Similarity=0.239 Sum_probs=202.7
Q ss_pred CCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCc--EEEEEeCCCcEEEEecc
Q 001415 782 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVR 858 (1082)
Q Consensus 782 ~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~ 858 (1082)
...|...++++++ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|.+|++||.|.+|+..
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 3459999999998 678999997 78999999999999999999999999999998 543 78899999999999999
Q ss_pred cceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE
Q 001415 859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 938 (1082)
Q Consensus 859 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 938 (1082)
..+++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.+.... ++.. . ...+.+.|+|.|.+++.+
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L-~------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNL-K------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce--eecc-C------CcceeeEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999998876422 2221 1 123569999999999999
Q ss_pred ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCcee
Q 001415 939 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1018 (1082)
Q Consensus 939 ~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1018 (1082)
..+.|-+|.+.+......... ...+.++.|- ++..|++|.+|+.|.+||.+++...+.+. +|.+. |.
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK- 253 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK- 253 (362)
T ss_pred eccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee-
Confidence 899999999988887766653 3457777775 56788999999999999999988888777 54232 44
Q ss_pred eEEE-EeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1019 LVIA-AHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1019 ~~~~-~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
.+. |...++.+|+++++||.|+|||+....
T Consensus 254 -~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 -DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred -eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 444 333367899999999999999999874
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.3e-25 Score=235.16 Aligned_cols=254 Identities=16% Similarity=0.279 Sum_probs=213.9
Q ss_pred CCCcceeeecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccC-CCCce
Q 001415 346 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSV 423 (1082)
Q Consensus 346 ~~~~~~~~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V 423 (1082)
.....+..+.. +.+.|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.+ |...|
T Consensus 204 ~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rv 263 (484)
T KOG0305|consen 204 ASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRV 263 (484)
T ss_pred cCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcCcee
Confidence 33444444444 4899999999999995 99999999999999988877764 555 99999
Q ss_pred eEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 424 ~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~ 503 (1082)
.+++|+ +..+.+|+.++.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||..+..++.
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccE
Confidence 999998 77899999999999999998876553 3889999999999999999 89999999999999998889999
Q ss_pred EeecCCcCeEEEeeeecCCceEEEEec--CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 504 IFEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
.+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++..+.... .+..|.++.|++..+
T Consensus 338 ~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k--------------- 400 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK--------------- 400 (484)
T ss_pred EEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC---------------
Confidence 9999999999999998776 4888886 49999999998655544332 344566666666554
Q ss_pred ecCCCCEEEE--EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 582 FDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 582 ~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
.+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 ------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ------ELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------EEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4554 44678999999999999999988776 7999999999999999999999999998664
No 105
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.6e-24 Score=237.85 Aligned_cols=235 Identities=14% Similarity=0.199 Sum_probs=179.8
Q ss_pred EcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-CCeEEEEeCCCeEEEEEccCCce-
Q 001415 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 454 (1082)
Q Consensus 377 gs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~iwd~~~~~~- 454 (1082)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777777765543332 37899999999999996 89999999999999999986432
Q ss_pred e----eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec
Q 001415 455 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530 (1082)
Q Consensus 455 ~----~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 530 (1082)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|+++ |.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd--G~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC--CCEEEEEe
Confidence 1 122357899999999999999885 56899999999999999999888776 6678999998765 47899999
Q ss_pred CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCC----eEEEEECCC-
Q 001415 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 605 (1082)
Q Consensus 531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 605 (1082)
.|+.|++||++++.....+..|.+.+.... +....|++++.++++++.|+ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999998777766666655433222 12223456667888887664 799999984
Q ss_pred cceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 606 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
++++..+..+.....+......++|.++++|..|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 667766655554333333444557899999999999999999766
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.2e-24 Score=205.74 Aligned_cols=288 Identities=17% Similarity=0.220 Sum_probs=211.3
Q ss_pred ccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 416 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
-....+.|.+|+||| ...+++.++-|++||+|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 445678999999999 666777899999999999987422222 24667999999999999998 69999999999999
Q ss_pred EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|+.++ .+..+..|.++|..+.|.+...-..|++|+.|++|+.||.+...++.++..++. +.++.
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D-------------- 163 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD-------------- 163 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence 99999 456677799999999998877667899999999999999998777766655432 22111
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc-c
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-L 653 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~-~ 653 (1082)
-....++++..++.|.+|+++.+..........-.-.+++++...|....+.|+-+|.+.|..+..+.. .
T Consensus 164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 112257788889999999997654332221111112478999999888889999999999988876522 1
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 733 (1082)
--.++.|..... .++ .--.|.+++|+|.-..
T Consensus 235 nFtFkCHR~~~~------------------------~~~-------------------------~VYaVNsi~FhP~hgt 265 (347)
T KOG0647|consen 235 NFTFKCHRSTNS------------------------VND-------------------------DVYAVNSIAFHPVHGT 265 (347)
T ss_pred ceeEEEeccCCC------------------------CCC-------------------------ceEEecceEeecccce
Confidence 111222211100 000 1235778999999999
Q ss_pred eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee
Q 001415 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 805 (1082)
Q Consensus 734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s 805 (1082)
|++++.||+..+||-+.... + .....|..+|++.+|+.+|.++|.+.
T Consensus 266 lvTaGsDGtf~FWDkdar~k---------------------L----k~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 266 LVTAGSDGTFSFWDKDARTK---------------------L----KTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEEecCCceEEEecchhhhh---------------------h----hccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999998653221 0 01123889999999999999998774
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=230.72 Aligned_cols=238 Identities=17% Similarity=0.291 Sum_probs=204.7
Q ss_pred ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE-EEEec-C
Q 001415 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSP-D 431 (1082)
Q Consensus 354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d 431 (1082)
+.+|+..|..+++.+... ++++|.||++++|+-..++.+... .+.+|.+-|.+ +++-+ |
T Consensus 10 l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSICYAESD 70 (745)
T ss_pred eccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccceecccc
Confidence 445999999999888874 889999999999998766655432 35678888888 88886 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
+-.|.+|+.|.+|.+|...+...+. .+.||...|.+++...++. ++|||.|.++++|- .+++...+.+|...
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~as 142 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTAS 142 (745)
T ss_pred CcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchh
Confidence 6679999999999999999988666 8999999999999877775 89999999999995 56777889999999
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
|+++...+.. .+++|+.|++|++|.- ++...++.+|.+.|+.+++-+++. |++
T Consensus 143 VWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~----------------------flS 195 (745)
T KOG0301|consen 143 VWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH----------------------FLS 195 (745)
T ss_pred eeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------eEe
Confidence 9999876543 7999999999999965 567778899999999999988875 999
Q ss_pred EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~ 648 (1082)
++.||.|+.|++ +|+++..+.+|.. .+.+++...++..++++++|++++||+..
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEEec-cCceeeeeeccce--EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999998 7888888877665 68899988888999999999999999865
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-25 Score=234.02 Aligned_cols=373 Identities=16% Similarity=0.174 Sum_probs=259.9
Q ss_pred CCCcee---EEEEec-CCCeEEEEeCCCeEEEEEccCCcee---eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcE
Q 001415 419 PGVSVN---RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1082)
Q Consensus 419 h~~~V~---~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~---~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i 491 (1082)
|...|. .+..++ .++||.+|+.||.|++|++...... .....++.|.+.|+.++...+|+ .|+|+|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 444444 6778999999999999998754321 12346889999999999999998 69999999999
Q ss_pred EEEEccCC--ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeee
Q 001415 492 KVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1082)
Q Consensus 492 ~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~ 569 (1082)
++|+...+ -++.++..|.+-|.+++.- ..+..++++||.|+.|.+||+.++............+.++..
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s-------- 168 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS-------- 168 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC--------
Confidence 99999887 6788899999999999973 344479999999999999999976542221111111111111
Q ss_pred ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
.....+.+++.++.+..+++|+..+.|++||.++++.+..+.+|.. .|..+..++||..+++++.||+|++||+..
T Consensus 169 --G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 169 --GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred --CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc--ceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 1233677888888888899999999999999999988888876654 577777777777777777777777666532
Q ss_pred CccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc
Q 001415 650 GIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN 729 (1082)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 729 (1082)
T Consensus 245 -------------------------------------------------------------------------------- 244 (735)
T KOG0308|consen 245 -------------------------------------------------------------------------------- 244 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeE
Q 001415 730 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI 809 (1082)
Q Consensus 730 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i 809 (1082)
T Consensus 245 -------------------------------------------------------------------------------- 244 (735)
T KOG0308|consen 245 -------------------------------------------------------------------------------- 244 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccCEEEEEEeCCCCEEEEE
Q 001415 810 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSS 888 (1082)
Q Consensus 810 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 888 (1082)
.+++.++..|...|.++..+| +-..+.+|+.||.|..=|+.+. ++...++ ...+|..+..+.+.+-+-++
T Consensus 245 -------QrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~Wvt 315 (735)
T KOG0308|consen 245 -------QRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVT 315 (735)
T ss_pred -------cceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceee
Confidence 233333334444555566666 6677888888888888888774 3322232 44566677766444444667
Q ss_pred eCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415 889 GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITH 968 (1082)
Q Consensus 889 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~ 968 (1082)
+.|+.|+-|.... ...+++.|++...+.+....+++... ...... +| ..+|..
T Consensus 316 Ttds~I~rW~~~~-----------------------~~~l~~s~~~~~~~T~~~~~~~~~~~-tp~~vi--~G-g~ai~k 368 (735)
T KOG0308|consen 316 TTDSSIKRWKLEP-----------------------DIALSVSGDLDFFSTDSNNHSCDLTN-TPDSVI--PG-GAAIKK 368 (735)
T ss_pred eccccceecCCcc-----------------------ccccccCCCCCcccccCCCccccccC-CCceec--cC-chhhhh
Confidence 7899999997654 22445556555555555555554321 111111 12 345666
Q ss_pred EEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 969 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 969 l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
-++-.|.++++|-...|.+.+||+-..+.+..+.
T Consensus 369 ~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 369 HAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred hhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 6777899999999999999999998877765554
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8.6e-24 Score=212.37 Aligned_cols=279 Identities=17% Similarity=0.294 Sum_probs=222.7
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEe
Q 001415 620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKL 699 (1082)
Q Consensus 620 ~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~ 699 (1082)
.+.++...|....+.+|+.|..+.++|...+ +.+..+.+
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G---------------------------------------- 259 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG---------------------------------------- 259 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC----------------------------------------
Confidence 4667777777678889999988888887665 34333333
Q ss_pred cccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecc
Q 001415 700 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 779 (1082)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1082)
|...|..+.++++...+++++.|..|++|....... ...
T Consensus 260 ------------------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------------~~~---- 298 (506)
T KOG0289|consen 260 ------------------HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------------PTS---- 298 (506)
T ss_pred ------------------cceEEEEEEeccchhheeecCCcceEEeeccccccC-------------------ccc----
Confidence 667788899999999999999999999996542210 000
Q ss_pred cCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 780 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 780 ~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
...|..+|+.+..+|.|.|+++++ |+...+.|++++.++..... ..-.+++.+|+| ||.++++|..||.|+|||
T Consensus 299 --~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 299 --SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred --cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEE
Confidence 112899999999999999999998 58899999999998877654 334589999999 999999999999999999
Q ss_pred cccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415 857 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 936 (1082)
Q Consensus 857 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 936 (1082)
+.++..+..|.+|+++|..++|+.+|-|||+++.|+.|++||++.-+..+ .+..... ..+.++.|.+.|++|+
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~-----~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEK-----KEVNSLSFDQSGTYLG 448 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--eeecccc-----ccceeEEEcCCCCeEE
Confidence 99999999999999999999999999999999999999999998744222 2222221 3578999999999999
Q ss_pred EE-ecCeEEEEEccC--cceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415 937 VV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 992 (1082)
Q Consensus 937 ~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~ 992 (1082)
++ .+-+|++++-.+ .+++..+ ..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEEeec
Confidence 95 455566665443 3444444 377889999999999999999999999888764
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=220.41 Aligned_cols=270 Identities=14% Similarity=0.229 Sum_probs=218.1
Q ss_pred cceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1082)
Q Consensus 349 ~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1082)
.++...+.|.++|+.+.+-|....++|+++..+.|.|||+.+-.-.... .+.-.+...+.+|...=+.|+|
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccc
Confidence 3455678899999999999999999999999999999999764333210 0011122248899998899999
Q ss_pred ec-CCCeEEEEeCCCeEEEEEccCCce----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--CCce
Q 001415 429 SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAK 501 (1082)
Q Consensus 429 sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--~~~~ 501 (1082)
++ ..-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCC
Confidence 99 556899999999999999985433 5556678999999999999998777 79999999999999999 5667
Q ss_pred eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
.+...+|.+.|.+++|+|..+ ..||+|+.|++|++||+++... ...+..|...|..+.|+|...
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e-------------- 329 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE-------------- 329 (422)
T ss_pred cccccccCCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC--------------
Confidence 778889999999999998764 7999999999999999998665 458888889999999998865
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcce------------EEEEecCCCCCCcCeEEEcCCCCE-EEEEECCCcEEEEEe
Q 001415 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL------------LTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILAT 647 (1082)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~i~~~~~s~dg~~-l~~~~~dg~i~iwd~ 647 (1082)
..|++++.|+.+.+||+..-.. --.+...+|...|..+.|+|+..+ +++.+.|+.+.||.+
T Consensus 330 ------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 330 ------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 3588899999999999864211 122444456668999999997655 667889999999987
Q ss_pred cC
Q 001415 648 SD 649 (1082)
Q Consensus 648 ~~ 649 (1082)
..
T Consensus 404 s~ 405 (422)
T KOG0264|consen 404 AE 405 (422)
T ss_pred cc
Confidence 63
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.1e-25 Score=216.79 Aligned_cols=283 Identities=14% Similarity=0.195 Sum_probs=226.5
Q ss_pred ccCCCCceeEEEEecCC-CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
+.||.+.|.|+|=.|.. ..+|+|+.||.|+|||+....+.. ++..|.+.|..+++.. + .+++++.|.+|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999977 889999999999999999988777 7999999999999987 3 48999999999999
Q ss_pred EccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
.+.- .+++++.+ ...+..+.-+... ..+++||. .|-|||.....+...+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg-~s~~~gIdh~~~~--~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILG-KSVYLGIDHHRKN--SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeec-ccccccccccccc--ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9765 46677664 3445555433322 57888775 489999986555555544444444444444433
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1082)
..|++++.|+.|.+||++++.++..+..... -+.++|+|.+-.+++++.|..++.+|++......
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence 2466677999999999999999887765443 4679999988889999999999999999988888
Q ss_pred eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415 655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 734 (1082)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 734 (1082)
....+|...+. .+.| +|.|+.+++|+.|.+|+||....+........- .-..|.++.||.|.+++
T Consensus 266 ~v~~dhvsAV~--dVdf-------sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk------RMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 266 NVHKDHVSAVM--DVDF-------SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK------RMQHVFCVKYSMDSKYI 330 (433)
T ss_pred hhhcccceeEE--Eecc-------CCCcchhccccccceEEEeecCCCcchhhhhHh------hhheeeEEEEeccccEE
Confidence 88888888777 6777 999999999999999999999875443333222 23568999999999999
Q ss_pred eecccCCeEEEeecc
Q 001415 735 LALASNAIHLLWKWQ 749 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~~ 749 (1082)
++|+.|+.|++|...
T Consensus 331 ~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKAK 345 (433)
T ss_pred EecCCCcceeeeecc
Confidence 999999999999654
No 112
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-22 Score=221.85 Aligned_cols=518 Identities=14% Similarity=0.199 Sum_probs=323.5
Q ss_pred EEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCc-eEEEEEeCCCcEEEEEccCCceeE
Q 001415 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 425 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~-~~l~s~s~d~~i~vwd~~~~~~~~ 503 (1082)
.-.||+|++++.... +..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||+|++||...+..++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 347999999998775 4679999999999887 79999999999999887663 478899999999999999999999
Q ss_pred EeecCCcCeEEEeeeec--CCceEEEEecCCCcE-EEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415 504 IFEGHEAPVYSVCPHHK--ENIQFIFSTALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
++..+. ++.++.+.+. .....+..+..|..+ .....+.... ..+..-..+..--......+. .-.++
T Consensus 97 t~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q-------~~~~~~~t~~~~~~d~~~~~~--~~~~I 166 (792)
T KOG1963|consen 97 TFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQ-------SSRFVLATFDSAKGDFLKEHQ--EPKSI 166 (792)
T ss_pred EEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccc-------eeeeEeeeccccchhhhhhhc--CCccE
Confidence 987543 3333322110 000111112222111 1010000000 000000000000000000010 12345
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEE--ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc
Q 001415 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1082)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1082)
.+++.+.+.... .+..+.+|+..++...... ....|...+++.+++|++++++++..||.|.+|.--.. .
T Consensus 167 ~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~ 238 (792)
T KOG1963|consen 167 VDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------S 238 (792)
T ss_pred EEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------c
Confidence 556666544443 4556888888775511111 11122234789999999999999999999999963221 0
Q ss_pred cccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc
Q 001415 659 NLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 738 (1082)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 738 (1082)
..+-+..+|. + |...|.+++|+++|.+|++|+
T Consensus 239 ------------------------------~~~~t~t~lH--------------W----H~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 239 ------------------------------DDSETCTLLH--------------W----HHDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred ------------------------------cccccceEEE--------------e----cccccceeEEecCCceEeecc
Confidence 0001111111 1 788999999999999999999
Q ss_pred cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCC
Q 001415 739 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 817 (1082)
Q Consensus 739 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~ 817 (1082)
..+.+.+|.+.++.. + .++. -..+|..+.+|||+.+.+... |+.|.+....+.
T Consensus 271 ~E~VLv~Wq~~T~~k-----------------------q-fLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 271 REGVLVLWQLETGKK-----------------------Q-FLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cceEEEEEeecCCCc-----------------------c-cccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 999999997653321 1 1111 578899999999999877764 899999988665
Q ss_pred eeEEEECCC-----------CCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec-----------ccccCEEE
Q 001415 818 KTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-----------GHSKRITG 875 (1082)
Q Consensus 818 ~~~~~~~~~-----------~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----------~h~~~V~~ 875 (1082)
....++.+. .+-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+. .+.-.+++
T Consensus 325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred hhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 554444332 23367889999 67778888899999999998876665543 12345788
Q ss_pred EEEeCCCCEEEEEeC--------CC--cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCc-EEEE-EecCeE
Q 001415 876 LAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQL 943 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~--------Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~-~l~~-~~d~~i 943 (1082)
++.+-.|.+++|+-. || .+++|-.......-.....+...|.. ..+..+.+++... ..++ +.||.+
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~ 481 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVRCVTASVDGDF 481 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccceeEEeccCCeE
Confidence 888888999998632 33 47899887755433333333333332 2233333444333 5555 689999
Q ss_pred EEEEccCcceee----ee----ccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC-ceeeeeeCCCeecCCCCCCC
Q 001415 944 AIFETTKLECVK----QW----VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSS 1014 (1082)
Q Consensus 944 ~iwd~~~~~~~~----~~----~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~ 1014 (1082)
+||-....+.+. .| ...-|..++++++||.||..|+.+ .|++|.+||..+ .++.+...... .+.+
T Consensus 482 KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~-~~~~---- 555 (792)
T KOG1963|consen 482 KIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRN-WPIA---- 555 (792)
T ss_pred EEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccc-cchH----
Confidence 999884332211 11 112368899999999999877655 689999999999 55554443222 1211
Q ss_pred CceeeEEEEeCC-CCCeEEEEecCCcEEEEccCCCCCcc
Q 001415 1015 NVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESEGKW 1052 (1082)
Q Consensus 1015 ~v~~~~~~~~~~-d~~~l~s~~~dg~v~vW~~~~~~~~~ 1052 (1082)
...|..+ .....++....+.+.+|++.+....|
T Consensus 556 -----~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 556 -----ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -----hHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 1222211 02234455668899999999988666
No 113
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.1e-23 Score=234.40 Aligned_cols=242 Identities=14% Similarity=0.193 Sum_probs=175.7
Q ss_pred eeeecCCCCCceEEEEecC-CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 351 VTRTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spd-g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
+..+.+|.+.|++++|+|+ +. +||+|+.||+|+|||+.++...... + . .....+.+|...|.+++|+
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~------i---~--~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKE------I---K--DPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccc------c---c--cceEEeecCCCcEEEEEEC
Confidence 4456679999999999998 55 6999999999999999865321100 0 0 0011367899999999999
Q ss_pred cCCCe-EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC
Q 001415 430 PDGSL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1082)
Q Consensus 430 pdg~~-las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 508 (1082)
|++.. ||+++.|++|+|||+.+++... .+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+..+.+|
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99876 5789999999999999987554 343 567899999999999 7899999999999999999999999999
Q ss_pred CcCeEEEeeee---cCCceEEEEecCCC----cEEEEecCCCCc-eeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415 509 EAPVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 509 ~~~v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
.+.+.+.++.. .+++.+|++++.|+ .|++||++.... ......... .. .+...
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~ 269 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPH 269 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEe
Confidence 98765544332 24556888887764 799999986332 222111110 00 11111
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC
Q 001415 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630 (1082)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg 630 (1082)
...+++.++++|+.|+.|++|++..+. +..+.......+..+++|.|+.
T Consensus 270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 270 YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 113345678899999999999998764 3334433344567889999964
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.2e-24 Score=216.12 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=222.9
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEE--------------EEe-eccccCeeEEEecCCCCc
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 479 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~--------------~~~-~~h~~~V~~l~fs~dg~~ 479 (1082)
....|.-+|.|++++||+++..+++.+++|.=|++.+++..+.. ..- .+|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 36789999999999999999999999999999999988743110 011 37889999999999999
Q ss_pred eEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEE
Q 001415 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1082)
Q Consensus 480 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 559 (1082)
||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++-+|...|..+
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999996544 579999999999999999888877888888888877
Q ss_pred EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001415 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1082)
Q Consensus 560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d 639 (1082)
....-++ .+-+|+.|+++++|++.....+ .+.++. ..+-|++|-.+ ..+++|+.+
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~eesql-ifrg~~--~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEESQL-IFRGGE--GSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEecccccee-eeeCCC--CCeeeEEEecc-cceeeccCC
Confidence 6655554 3444569999999999543333 333333 35788888765 468899999
Q ss_pred CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccc
Q 001415 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 719 (1082)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 719 (1082)
|.|.+|++...+.+...-..|.... +. .. -.+.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~----------------~~--------------------------~~-----~~~~ 380 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIP----------------EL--------------------------DP-----VNGN 380 (479)
T ss_pred ceEEEeeecccCceeEeeccccccC----------------Cc--------------------------cc-----cccc
Confidence 9999999987644333322222110 00 00 0033
Q ss_pred cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415 720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 799 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 799 (1082)
..|++++..|....+++++.+|.+++|.+..+-.. ..+ +....-.+.|++++|+++|+
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-------------------i~~---l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-------------------INL---LYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEecCCccc-------------------cce---eeecccccEEEEEEEccCCC
Confidence 58999999999999999999999999976543110 000 00111467899999999999
Q ss_pred eEEEee
Q 001415 800 YVMSAS 805 (1082)
Q Consensus 800 ~l~~~s 805 (1082)
.+++|.
T Consensus 439 ~ivagi 444 (479)
T KOG0299|consen 439 RIVAGI 444 (479)
T ss_pred EEEEec
Confidence 887775
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=201.74 Aligned_cols=306 Identities=18% Similarity=0.335 Sum_probs=228.5
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEe
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 539 (1082)
.+.||.++|+.++-..... ++.+++.|.+.+||.+++|.|+.++.||.+.|+++.|++.. .++++++.|++-.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHHH
Confidence 6889999999999876655 89999999999999999999999999999999999998765 6999999999999996
Q ss_pred cC----CCCce--e------eecCCC--CceEEEEEccCCC------eeeecccccceeEEEecCCCCEEEEEeCCCeEE
Q 001415 540 YD----NLGSR--V------DYEAPG--RWCTTMAYSADGT------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 599 (1082)
Q Consensus 540 ~~----~~~~~--~------~~~~~~--~~v~~~~~s~d~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 599 (1082)
.. ..... . ....+. .+-..-....||. ..+.| +...+.+..|-..++++++++-|.+..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccce
Confidence 21 11100 0 000000 0111111222322 12333 334677778888899999999999999
Q ss_pred EEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCcccc
Q 001415 600 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSL 679 (1082)
Q Consensus 600 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 679 (1082)
+||+++++.+..+.+|.+ ..+.++-+|..+++++.+.|.+.++||.+...+.+..++
T Consensus 298 lwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--------------------- 354 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--------------------- 354 (481)
T ss_pred eeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeec---------------------
Confidence 999999999999998876 688899999999999999999999999864311111111
Q ss_pred CCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCc
Q 001415 680 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 759 (1082)
Q Consensus 680 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 759 (1082)
T Consensus 355 -------------------------------------------------------------------------------- 354 (481)
T KOG0300|consen 355 -------------------------------------------------------------------------------- 354 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCe-eEEEECCCCCCeeEEEEec
Q 001415 760 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHP 837 (1082)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp 837 (1082)
+|...|+++.|..|.+ +++|+ |.+|++||+.+.+ ++.++. ....++.++.+.
T Consensus 355 ------------------------GHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~ 408 (481)
T KOG0300|consen 355 ------------------------GHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK 408 (481)
T ss_pred ------------------------ccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec
Confidence 2555566666655554 34444 4677888877543 344554 456788999998
Q ss_pred CCCcEEEEEeCCCcEEEEecccceeeeee-----cccccCEEEEEEeCCC--CEEEEEeCCCcEEEEEcCC
Q 001415 838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKL-----KGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 838 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l-----~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i~vwd~~~ 901 (1082)
++.+||.--++..|++||+...+ +..+ ++|...|+|++|..+. .-|++++-|..+.-|++..
T Consensus 409 -g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 409 -GHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 88899999999999999998554 3333 5899999999998654 3488999999999999876
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-22 Score=183.61 Aligned_cols=301 Identities=16% Similarity=0.156 Sum_probs=229.5
Q ss_pred CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 619 ~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
..|.+++|+|.|.+.++|++..+++|-.... +...-.+|.......++-+ .
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~---l~~~r~~hea~~~pp~v~~--------------------------k 83 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPA---LIDLRHAHEAAKQPPSVLC--------------------------K 83 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEcccc---ccCcccccccccCCCeEEe--------------------------e
Confidence 3689999999999999999999998865432 1222223322221101111 0
Q ss_pred ecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeec
Q 001415 699 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 778 (1082)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1082)
....|.+.|.+.+|+|+|+.+++++.|..|++..+.....+..|. .
T Consensus 84 ---------------r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~----------------d--- 129 (350)
T KOG0641|consen 84 ---------------RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH----------------D--- 129 (350)
T ss_pred ---------------eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCc----------------c---
Confidence 012388999999999999999999999999987665433322221 1
Q ss_pred ccCCCCCCCCccEEEeec----CCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcE
Q 001415 779 DVTDSNPEEAVPCFALSK----NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 852 (1082)
Q Consensus 779 ~~~~~~~~~~i~~l~~s~----dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v 852 (1082)
+...-|.+.|+.++|-. .|.+|++++ |.+|++-|...++....+.+|.+.|.++.-- ++.++++|+.|.+|
T Consensus 130 -le~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdkti 206 (350)
T KOG0641|consen 130 -LEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTI 206 (350)
T ss_pred -eeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceE
Confidence 11122889999999964 355788876 5678888999999999999999998876422 56899999999999
Q ss_pred EEEecccceeeeeecc-------cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcE
Q 001415 853 QIYNVRVDEVKSKLKG-------HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 925 (1082)
Q Consensus 853 ~iwd~~~~~~~~~l~~-------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 925 (1082)
++||++-..++.++.. .++.|.+++..|.|++|++|-.|....+||+..+ +.++.+..|. ..|.+
T Consensus 207 rfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-----r~iq~f~phs---adir~ 278 (350)
T KOG0641|consen 207 RFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-----RMIQRFHPHS---ADIRC 278 (350)
T ss_pred EEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----ceeeeeCCCc---cceeE
Confidence 9999998888777642 2367999999999999999999999999999995 4566666666 68999
Q ss_pred EEEcCCCcEEEE-EecCeEEEEEccCc--ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415 926 VQFHQDQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 926 ~~fspdg~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~ 993 (1082)
+.|||...|+.+ +.|..|++-|+... ..+.......|...+..+.|.|..--+++.+.|.++.+|.+.
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999 68999999998532 222333345788999999999998888999999999999764
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=209.33 Aligned_cols=284 Identities=15% Similarity=0.224 Sum_probs=235.5
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1082)
.-.++++...|... .+.+|+.|..+.++|...++.+. ++.||.-.|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheee
Confidence 35688888888845 59999999999999999988877 48999999999999999999999
Q ss_pred EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC--CcCeEEE
Q 001415 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAPVYSV 515 (1082)
Q Consensus 438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~ 515 (1082)
++.|..|+||......... ....|.++|+.+...|.|. ||++++.|++..+.|+++|..+...... .-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998776544 5778999999999999999 8999999999999999999998776532 2347888
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
+|||++ ..+.+|..|+.|++||+.+......+.+|.++|..++|+.+|- +++++++|
T Consensus 354 ~fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY---------------------~Lat~add 410 (506)
T KOG0289|consen 354 AFHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY---------------------WLATAADD 410 (506)
T ss_pred eEcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce---------------------EEEEEecC
Confidence 888654 7999999999999999999998889999999999999999887 89999999
Q ss_pred CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC-ccceeecccccccccccccccCCC
Q 001415 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG-IRLLRTFENLAYDASRTSENSKNG 674 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1082)
+.|++||++..+...++...... ++.++.|.+.|.+|+.++.+=.|++++-.+. ......+..|..... .+.|
T Consensus 411 ~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st--~v~F--- 484 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLST--GVRF--- 484 (506)
T ss_pred CeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccc--eeee---
Confidence 99999999998888888766554 6899999999999999977666666553222 234444444443222 4445
Q ss_pred CccccCCCCceeeeccCCceeEEEe
Q 001415 675 DVRSLADVKPRITEESNDKSKVWKL 699 (1082)
Q Consensus 675 ~~~~s~~~~~l~~~~~d~~i~iw~~ 699 (1082)
....+++++++.|..++++.+
T Consensus 485 ----g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 ----GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----cccceEEeeccchhheEEeec
Confidence 667778888888887777643
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.7e-23 Score=197.96 Aligned_cols=248 Identities=16% Similarity=0.271 Sum_probs=193.7
Q ss_pred eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcE
Q 001415 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1082)
Q Consensus 456 ~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 535 (1082)
.+.+.+..|.++|+++|.+ +. ++||||.|-+|+|||+.+...+..+-.|.+.|+++.|.+......|++|+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 3455678999999999986 66 8999999999999999999999999999999999999877655689999999999
Q ss_pred EEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC
Q 001415 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1082)
Q Consensus 536 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1082)
.+|+...-.....+..|.+.|+.+++.|.++ ..++.+.|+.++.||+-.|+.-..+...
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---------------------LALsVg~D~~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---------------------LALSVGGDQVLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---------------------eEEEEcCCceeeeehhhcCccceeeccC
Confidence 9999998777777777777777666666655 7788999999999999999877666554
Q ss_pred CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCcee
Q 001415 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSK 695 (1082)
Q Consensus 616 ~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 695 (1082)
.. ...+.|+|.|.+++++..+ .|-+|.+.+. .....+.
T Consensus 169 ~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~------------------------------------- 206 (362)
T KOG0294|consen 169 NK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE------------------------------------- 206 (362)
T ss_pred Cc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh-------------------------------------
Confidence 43 3559999999988877764 4667765443 1100000
Q ss_pred EEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcce
Q 001415 696 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 775 (1082)
Q Consensus 696 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1082)
T Consensus 207 -------------------------------------------------------------------------------- 206 (362)
T KOG0294|consen 207 -------------------------------------------------------------------------------- 206 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEE-ecCCCcEEEEEeCCCcEE
Q 001415 776 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF-HPQDNNIIAIGMDDSSIQ 853 (1082)
Q Consensus 776 ~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-sp~~~~~lasg~~dg~v~ 853 (1082)
....+.|+.|-. +..+++|. ++.|.+||.++..+...+.+|..+|..+.+ ...++.+|++++.||.|+
T Consensus 207 ---------~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~ 276 (362)
T KOG0294|consen 207 ---------NPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK 276 (362)
T ss_pred ---------ccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence 112233444433 34555554 588999999999999999999999999984 333778999999999999
Q ss_pred EEecccc
Q 001415 854 IYNVRVD 860 (1082)
Q Consensus 854 iwd~~~~ 860 (1082)
|||+...
T Consensus 277 vWd~~~~ 283 (362)
T KOG0294|consen 277 VWDIDME 283 (362)
T ss_pred EEEcccc
Confidence 9999865
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.5e-24 Score=196.55 Aligned_cols=257 Identities=18% Similarity=0.235 Sum_probs=205.1
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--CCC
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1082)
.|.+.|..+...--|++ |||++.|++|+|+.+..+.... .-..|.||.++|+.++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48899999999999996 9999999999999997755311 0113899999999999987 899
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC---ceeEEeecCCc
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEA 510 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h~~ 510 (1082)
+||+++.||.|.||.-+++. ..+..+...|...|++++|.|.+-.++|++++.||.|.|.+.++. ...+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999883 445557788999999999999988889999999999999998764 22345567999
Q ss_pred CeEEEeeeecCC-c-----------eEEEEecCCCcEEEEecCCCCc--eeeecCCCCceEEEEEccCCCeeeecccccc
Q 001415 511 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1082)
Q Consensus 511 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~ 576 (1082)
.|++++|.|..- | ..|++|+.|..|++|+.++..- ...+..|.+.|+.++|.|.-..
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--------- 221 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--------- 221 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence 999999987621 1 5699999999999999987532 2357888999999999886420
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCc-ce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1082)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~ 648 (1082)
...++++++.||.+.||..+.. +. ..++ .+.-...+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1126999999999999976522 11 1111 11223368899999999999999999999999754
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=212.60 Aligned_cols=287 Identities=16% Similarity=0.207 Sum_probs=223.5
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
.+-+|.+.|.|++=+|..-..+|+|+.||.|+|||+....++.+ +..|.+.|..|++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--
Confidence 55679999999999999844699999999999999998887764 889999999999987
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCe
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 512 (1082)
..+++++.|.+|+.|.+... .+. ++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.-....|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence 77888999999999998873 222 3333 34566666666666 6888875 59999999999999998888899
Q ss_pred EEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE
Q 001415 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1082)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1082)
.++.|+|... ..|++|+.|+.|.+||++...+....... . ....++|+|.+-.|+++
T Consensus 191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-m---------------------RTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-M---------------------RTNTICWNPEAFNFVAA 247 (433)
T ss_pred eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-c---------------------cccceecCccccceeec
Confidence 9999998775 68999999999999999986665432211 0 23346666655578899
Q ss_pred eCCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccccc
Q 001415 593 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1082)
Q Consensus 593 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
++|..++.+|++.-+ ++.....| ...|.++.|||.|+-+++|+.|.+|+||....+...-.-.......+. ++.|
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~--~Vk~ 323 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF--CVKY 323 (433)
T ss_pred cccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee--EEEE
Confidence 999999999987643 44555544 447999999999999999999999999998776322111112222222 5555
Q ss_pred CCCCccccCCCCceeeeccCCceeEEEecccC
Q 001415 672 KNGDVRSLADVKPRITEESNDKSKVWKLTELS 703 (1082)
Q Consensus 672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~ 703 (1082)
+.|.+++++|+.|+.|++|......
T Consensus 324 -------S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 324 -------SMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -------eccccEEEecCCCcceeeeecchhh
Confidence 9999999999999999999976543
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=4e-23 Score=219.82 Aligned_cols=274 Identities=14% Similarity=0.229 Sum_probs=221.1
Q ss_pred ccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccE-EEee
Q 001415 717 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-FALS 795 (1082)
Q Consensus 717 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s 795 (1082)
+|...|..+++.+.. .+++++.||++++|+-..... +.. ....+|.+.|.. +++-
T Consensus 12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~-~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LET-HAFEGPKGFIANSICYA 67 (745)
T ss_pred cCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccc-eecccCcceeeccceec
Confidence 488888888877665 689999999999996432111 110 001125555555 6766
Q ss_pred c-CCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCE
Q 001415 796 K-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 873 (1082)
Q Consensus 796 ~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 873 (1082)
+ ++-.+++|+ |.+|.+|...+..+..++.+|...|.++.... ++. +++|+.|.++++|.. +++...+.+|...|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchhe
Confidence 4 333466665 89999999999999999999999999999887 665 899999999999975 46677799999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcce
Q 001415 874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 953 (1082)
Q Consensus 874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~ 953 (1082)
+++++-|++ .++|||.|.+|++|.-.+ .++.+.+|. ..|+.+++-+++.++-++.||.|++|++ +|++
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~ 211 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV 211 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCce
Confidence 999999988 889999999999997644 677888888 6899999999999999999999999999 7888
Q ss_pred eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415 954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus 954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
+.... +|..-|.++....++..++++++|++++||+.. ++.+.|. +|. ..++ ++.+.+ +.-+++
T Consensus 212 l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~--NgDIvv 275 (745)
T KOG0301|consen 212 LLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL--NGDIVV 275 (745)
T ss_pred eeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee--CCCEEE
Confidence 77765 999999999999999999999999999999987 6666666 332 2355 555555 345899
Q ss_pred EecCCcEEEEccC
Q 001415 1034 GLSDGGVHVFEPL 1046 (1082)
Q Consensus 1034 ~~~dg~v~vW~~~ 1046 (1082)
|++||.|+||...
T Consensus 276 g~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 276 GGSDGRVRVFTVD 288 (745)
T ss_pred eccCceEEEEEec
Confidence 9999999999877
No 122
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=212.38 Aligned_cols=494 Identities=11% Similarity=0.113 Sum_probs=279.4
Q ss_pred CceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe
Q 001415 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1082)
Q Consensus 360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1082)
.|..++|-|||..|++.+ +..+.|||++.|..+.+ +++|.+.|.|+|||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 899999999999766543 57899999999998874 999999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeee
Q 001415 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1082)
Q Consensus 440 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1082)
.|..|.+|+.+-...++ ..|.+.|.|+.|+|-.. .|+|++-. ..-+|..+.....+. + ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~-k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKH-K-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhh-h-hheeEEEeee--
Confidence 99999999977544333 36999999999999998 68888753 466898665443321 1 2234555555
Q ss_pred cCCceEEEEecCCCcEEEEecCCCCceeeecC---CCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCC
Q 001415 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1082)
Q Consensus 520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 596 (1082)
..||++++.|-.+|+|.+-+-.. ++...+.- ...+|.+++|+|... .| ....+++..-..
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence 57789999999999999885433 33333332 455788888887653 11 112566777778
Q ss_pred eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCc
Q 001415 597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDV 676 (1082)
Q Consensus 597 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1082)
++.++.+. |+.+..-..-+- ...|+.+.++|.++..|+.|+.+.+|... | -.+.++......+. ++..
T Consensus 204 TLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIW--tV~~----- 271 (1081)
T KOG1538|consen 204 TLSFYQLS-GKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIW--TVQA----- 271 (1081)
T ss_pred eeEEEEec-ceeecccccCCC--CchhheeccCCcEEEEccCCCceEEEeec-C-eEEeeccccceeEE--EEEE-----
Confidence 88888874 444432221111 35789999999999999999999998532 3 12222222222221 2222
Q ss_pred cccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc--cCCceeeecccC--CeEEEeeccccc
Q 001415 677 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT--NSGNAILALASN--AIHLLWKWQRTE 752 (1082)
Q Consensus 677 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~d--~~i~iw~~~~~~ 752 (1082)
-|+++.++.|..||+|..|++... ....+.-..-......+.+.+- -.++.+-..+.| ..+.+|+-..
T Consensus 272 --~PNsQ~v~~GCqDGTiACyNl~fS----TVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrL-- 343 (1081)
T KOG1538|consen 272 --KPNSQYVVVGCQDGTIACYNLIFS----TVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRL-- 343 (1081)
T ss_pred --ccCCceEEEEEccCeeehhhhHHh----HhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhh--
Confidence 556666666666666666655321 0000000000000000000000 000000000000 0000000000
Q ss_pred cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee---cCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCC
Q 001415 753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS---KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA 829 (1082)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~ 829 (1082)
..--...+.+|...++.......+. ...-...+.+| -.+..++.+.+..+.-+|...-+...-. -..-
T Consensus 344 -----AVQLpeki~iYel~se~~~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~--M~S~ 414 (1081)
T KOG1538|consen 344 -----AVQLPEKILIYELYSEDLSDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQ--MESL 414 (1081)
T ss_pred -----eecccceEEEEeccccccccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhh--HHHH
Confidence 0000001222222222211110000 00001111111 1234555555666666665421110000 0000
Q ss_pred eeEEE--EecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc
Q 001415 830 ATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 907 (1082)
Q Consensus 830 v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 907 (1082)
|.-+. =-|.+..-|+.|..||.|+-.-+.+.-++. +......|.|+..+...+.||+..+.++..++|+.+++..
T Consensus 415 iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL-- 491 (1081)
T KOG1538|consen 415 IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL-- 491 (1081)
T ss_pred HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE--
Confidence 11111 112255678889999987655455433332 2335578999999999999999999999999999997642
Q ss_pred eeeeccCCCCCCCCCCcEEEEcCCCcEEE-EEecCeEEE
Q 001415 908 RFLQIPTGRTPTAQSDTRVQFHQDQIHFL-VVHETQLAI 945 (1082)
Q Consensus 908 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~-~~~d~~i~i 945 (1082)
++. .++.+++|.....-+. .+..|.+.|
T Consensus 492 --~QE--------pg~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 492 --FQE--------PGANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred --eec--------CCCceEEeeccccceEEEecCCceEE
Confidence 222 3467889987644433 355565544
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-23 Score=195.99 Aligned_cols=265 Identities=18% Similarity=0.240 Sum_probs=206.3
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC--CCCceEEEEEeCCCcEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~--dg~~~~l~s~s~d~~i~ 492 (1082)
+...|.+.|..+...--|++||+++.|++|+|+.+........+.+|.||.++|+.++|.. -|. +||+++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4678999999999999999999999999999999998877667779999999999999977 677 899999999999
Q ss_pred EEEccCCc--eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc---eeeecCCCCceEEEEEccC---
Q 001415 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD--- 564 (1082)
Q Consensus 493 vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~d--- 564 (1082)
||.-.+|+ .......|...|++++|.|..-|-.|++++.||.|.+.+.+.... ......|.-.|.+++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977774 345667899999999999999999999999999999999887622 2345567778899999886
Q ss_pred CCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC----CEEEEEECCC
Q 001415 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 640 (1082)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg----~~l~~~~~dg 640 (1082)
|..+-.+. ...-..|++|+.|..|+||+...++-+..-...+|...|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~----------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGP----------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCc----------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 32110000 001247999999999999999887543322233445589999999953 5799999999
Q ss_pred cEEEEEecCCcc--ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415 641 GIKILATSDGIR--LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700 (1082)
Q Consensus 641 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~ 700 (1082)
++.||....... ....+........ .+.| +..|..|++++.|+.+.+|.-.
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f~~~~w--~vSW-------S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEFPDVVW--RVSW-------SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEEecCccCcccccccccCCcceE--EEEE-------eccccEEEEecCCcEEEEEEeC
Confidence 999998763311 1222232222222 4445 8899999999999999999865
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.7e-20 Score=203.23 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=205.0
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc-eeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
.|+..-+.++|.|+|. +|.+++.||.|++|+..... ... .+.-++..|.+++. ++.+
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSNH 68 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--cccc
Confidence 5888899999999999 58888999999999986542 111 12236777877776 5569
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 514 (1082)
|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ ++|.||.|-.|++-++.+....+.+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2334466899999999999 8999999999999999999999999999999999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1082)
+.++|.. .+|++.+-||.|++||+.++.....+..-...-.. .....+..++|+|++..+++.+.
T Consensus 144 l~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 144 LSYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred eeEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeecc
Confidence 9987654 79999999999999999987665544432210000 00124455778888778999999
Q ss_pred CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecC
Q 001415 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
|+.|.+|+..+.+....+........+..++|+|+|+|||+++.+|.|.|||..+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999988887666555689999999999999999999999999986
No 125
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.4e-21 Score=208.63 Aligned_cols=516 Identities=12% Similarity=0.134 Sum_probs=316.7
Q ss_pred CCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC---CeE
Q 001415 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLF 435 (1082)
Q Consensus 359 ~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~l 435 (1082)
..-....||+|+++|+.. .+..|.||.+.||.++. .+.+|..++..+.+.|.. .++
T Consensus 17 ~~~~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~ 75 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYL 75 (792)
T ss_pred ceecccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEE
Confidence 333445799999975443 47899999999999887 388999999999999854 477
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec----CCCCceEEEEEeCCCcEEEEEccCCceeE--------
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKTIKVWDATNGAKQY-------- 503 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs----~dg~~~~l~s~s~d~~i~vwd~~~~~~~~-------- 503 (1082)
.+++.+|.|++||...+..++ ++..+ .++..+.+. ..... +.++...-..+.-...+.+....
T Consensus 76 ~~~sl~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~~-~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~ 150 (792)
T KOG1963|consen 76 IVCSLDGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISAN-VYVSVEDYSILTTFSKKLSKQSSRFVLATFD 150 (792)
T ss_pred EEEecCccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccce-eEeecccceeeeecccccccceeeeEeeecc
Confidence 799999999999999998776 33322 223333332 11110 11221111111111111111111
Q ss_pred -----EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccccee
Q 001415 504 -----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1082)
Q Consensus 504 -----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~ 578 (1082)
.+..|.. -.++...+.+ .+.....+..+.+|+..... .... . +-..-++...+.
T Consensus 151 ~~~~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~-~~~~-~---------------~~~~~~Htf~~t 209 (792)
T KOG1963|consen 151 SAKGDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHT-KHTS-S---------------RDITVHHTFNIT 209 (792)
T ss_pred ccchhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccc-eeec-c---------------chhhhhhcccce
Confidence 1122222 1233333332 23333345567777766533 1100 0 001112222367
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCC--cceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceee
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1082)
+.+++|.+++++++..||.|.+|.--. +.....-..|-|...|.+++|+++|.+|++|+..|.+.+|.+.++.+ +.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qf 287 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QF 287 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--cc
Confidence 788888888999999999999996433 22222222333445799999999999999999999999999998842 22
Q ss_pred cccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccccc----CcccccceeEEEEccCCc
Q 001415 657 FENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP----ENLRATKISRLIFTNSGN 732 (1082)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~ 732 (1082)
+......+ .++..+||+...+....|+.|.+-...++.....+..+..+ .....+-.+.+.++|..+
T Consensus 288 LPRLgs~I---------~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 288 LPRLGSPI---------LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred ccccCCee---------EEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 22212222 22334899999999999999999988776555555544443 122345567889999888
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-------
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------- 805 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s------- 805 (1082)
.++..+..+.+.+||+........- .+...+...+.. .+.-.++.++.+..|.++++..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~------~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKL------QVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeE------EEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 8999999999999998654321100 011111111110 1345678888888899999874
Q ss_pred --CC--eEEEEecCCCeeE----E-EECCCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEecccc----------eeeee
Q 001415 806 --GG--KISLFNMMTFKTM----A-TFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD----------EVKSK 865 (1082)
Q Consensus 806 --dg--~i~iwd~~~~~~~----~-~~~~~~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~----------~~~~~ 865 (1082)
|| .+++|.......- . ....|...+...++.+.... ..++++.||.++||-+... .|...
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 33 3889976643322 2 23467766666666543444 7899999999999988432 23333
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCc-ccccceeeeccCCCCCCCCCCcEEEEc---CCCcEEEEEecC
Q 001415 866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-EKQKNRFLQIPTGRTPTAQSDTRVQFH---QDQIHFLVVHET 941 (1082)
Q Consensus 866 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~fs---pdg~~l~~~~d~ 941 (1082)
-.-|..++++++|+.||..|+ ++.|++|.+||..+. +... .. +... ..+..+.|. +....++....+
T Consensus 505 ~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~-----~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 575 (792)
T KOG1963|consen 505 GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC-----TE-GSRN--WPIAELLFTAQTQNDGALVHATQQ 575 (792)
T ss_pred eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc-----cc-cccc--cchHhHhhhcccccccceeeccCc
Confidence 334788999999999996555 567889999999883 2111 11 1100 112222222 222333445678
Q ss_pred eEEEEEccCcceee
Q 001415 942 QLAIFETTKLECVK 955 (1082)
Q Consensus 942 ~i~iwd~~~~~~~~ 955 (1082)
.+.+|++.++...-
T Consensus 576 ~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 576 RLSVWNLLSMSLIW 589 (792)
T ss_pred eEehHhhhhhheec
Confidence 89999998777655
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-22 Score=193.00 Aligned_cols=295 Identities=17% Similarity=0.220 Sum_probs=220.9
Q ss_pred eeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee
Q 001415 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1082)
Q Consensus 423 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~ 502 (1082)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|.+++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999977544 6889999999999999999 7999999999999999999999
Q ss_pred EEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
+.+. ...+|+.+.|+|......+++-- +..-.+-++..... ..+..++++..-. .-.+..|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h-----------~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKH-----------SVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCce-----------eeccCCCcccccc------ccccccc
Confidence 9888 67899999999987755555433 32233333332111 1222333332111 1122358
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc
Q 001415 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1082)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1082)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|++++..+.|..|+.|++..-...
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~--------- 231 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE--------- 231 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc---------
Confidence 8889999999999999999999999998887554 236889999999999999999999999987532000
Q ss_pred cccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCe
Q 001415 663 DASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 742 (1082)
Q Consensus 663 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 742 (1082)
+.++.+. . ..
T Consensus 232 --------------------------~r~~e~e--------------~--------~~---------------------- 241 (405)
T KOG1273|consen 232 --------------------------GRDGEVE--------------P--------EH---------------------- 241 (405)
T ss_pred --------------------------CccCCcC--------------h--------hH----------------------
Confidence 0000000 0 00
Q ss_pred EEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC--CeEEEEecCCCeeE
Q 001415 743 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTM 820 (1082)
Q Consensus 743 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd--g~i~iwd~~~~~~~ 820 (1082)
++-|+ -....-.+++||.+|.|+++++. ..++||.-..|..+
T Consensus 242 -----------------------K~qDv-------------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 242 -----------------------KLQDV-------------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred -----------------------HHHHH-------------HhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 00000 02334457889999999998873 66999999999999
Q ss_pred EEECCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415 821 ATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 859 (1082)
Q Consensus 821 ~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 859 (1082)
+.+.+.. .....+.|+| -...+++- ..|.|++|....
T Consensus 286 KILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 286 KILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 9999888 4578899999 67677766 788999998653
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.6e-22 Score=192.22 Aligned_cols=272 Identities=19% Similarity=0.185 Sum_probs=205.3
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
..+.|..|.|+|.+.. |++++-||++++||+....... .-.|..++.+++|-+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4688999999999996 5556799999999998875443 345888999999987 56788
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEe
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 516 (1082)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+.......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 69999999999999998766666655 344788876
Q ss_pred eeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCC
Q 001415 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1082)
Q Consensus 517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 596 (1082)
.. ++.|+.|+.|..+.+||+++...........- +-.+.++++-|++.-+++++-||
T Consensus 143 v~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 VS----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred cc----CCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence 53 35799999999999999998665442221110 11344455555555788999999
Q ss_pred eEEEEECCCc----ceEEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415 597 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1082)
Q Consensus 597 ~i~iwd~~~~----~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1082)
.|.+=.++.. +....++.|.. ..+|++++|+|--..+++|+.||.|.+||+.+. +.+..+......+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKYETSIS 278 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccCCCCceE
Confidence 9888666554 22333333321 236899999999889999999999999999877 34444444333333
Q ss_pred ccccccCCCCccccCCCCceeeecc
Q 001415 666 RTSENSKNGDVRSLADVKPRITEES 690 (1082)
Q Consensus 666 ~~~~~~~~~~~~~s~~~~~l~~~~~ 690 (1082)
+++| +.+|..||+++.
T Consensus 279 --slsf-------s~dG~~LAia~s 294 (323)
T KOG1036|consen 279 --SLSF-------SMDGSLLAIASS 294 (323)
T ss_pred --EEEe-------ccCCCeEEEEec
Confidence 6666 889999988765
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4e-22 Score=202.27 Aligned_cols=291 Identities=13% Similarity=0.204 Sum_probs=224.1
Q ss_pred CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 619 ~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
..|+++.|+|....|++++.|+.++||.+...... .+. ++.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lq---------S~~l--------------------------- 255 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQ---------SIHL--------------------------- 255 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hhe---------eeee---------------------------
Confidence 46999999999999999999999999987543111 000 1111
Q ss_pred ecccCCCCccccccccCcccccceeEEEEccCCc-eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415 699 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777 (1082)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1082)
...+|.+..|.|+|. .+++++....++.||+...+..+-.
T Consensus 256 -------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~-------------------- 296 (514)
T KOG2055|consen 256 -------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK-------------------- 296 (514)
T ss_pred -------------------ccCccceeeecCCCceEEEecccceEEEEeecccccccccc--------------------
Confidence 456788999999998 7888888899999987644332211
Q ss_pred cccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 778 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
.........+..+.+|+++++|+..+ .|.|.+....+++.+.++. ..+.|..++|+. +++.|++.+.+|.|++||
T Consensus 297 --~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 297 --PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWN 372 (514)
T ss_pred --CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEe
Confidence 11111245678899999999999888 5999999999999998887 567899999999 778888888899999999
Q ss_pred cccceeeeeeccccc-CEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccc-cceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415 857 VRVDEVKSKLKGHSK-RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 857 ~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 934 (1082)
+....++.++....+ .-++++.|++|.+||+|+..|.|.|||.++.-.. ..+.+..... ....|+.+.|++|++.
T Consensus 373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDAQI 449 (514)
T ss_pred cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcchhh
Confidence 999999888863321 2356888899999999999999999997762111 0111111111 1257899999999999
Q ss_pred EEEE---ecCeEEEEEccCcceeeeeccCC-CCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415 935 FLVV---HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 935 l~~~---~d~~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~ 993 (1082)
||.+ ....+++-.+.+......|.... .-+.|+|++|||.|.+||.|.++|.|.+|.+.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9984 45789999999888888887543 24679999999999999999999999999864
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.3e-23 Score=208.41 Aligned_cols=282 Identities=12% Similarity=0.165 Sum_probs=223.0
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
|..-|.+++++...+.+++++. |.|+|||+....-.. .+. .+........|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-------------------Pvs-qLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-------------------PVS-QLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-------------------ccc-cccccCcccceeeeEecCC
Confidence 7788888999988887777664 689999987431100 000 0111125678999999999
Q ss_pred CCeEEEeeC-CeEEEEecCCCeeE--EEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415 798 DSYVMSASG-GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 874 (1082)
Q Consensus 798 g~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 874 (1082)
|+.|++|+. .++.|||+..-... ..+......+.+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 999999986 78999999865443 33444445688899999 899999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe-cCeEEEEEccCcce
Q 001415 875 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ETQLAIFETTKLEC 953 (1082)
Q Consensus 875 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~iwd~~~~~~ 953 (1082)
||.+++||..|-||+-|.+||-||+..+......- ....|.++-++|.+.+|+++. .+.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhh---------hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 99999999999999999999999999865322111 115688999999999999974 56788877654443
Q ss_pred eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415 954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus 954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
+..+.|.+.|.++.|++.|+++++.+.|+.+..|...-|..+.... . . ..+++|..+. |.+++++
T Consensus 627 ---yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-------E--~--SsVlsCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 627 ---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------E--S--SSVLSCDISF-DDKYIVT 691 (705)
T ss_pred ---eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-------c--c--Ccceeeeecc-CceEEEe
Confidence 3445789999999999999999999999999999999998886544 1 1 2345777776 4689999
Q ss_pred EecCCcEEEEcc
Q 001415 1034 GLSDGGVHVFEP 1045 (1082)
Q Consensus 1034 ~~~dg~v~vW~~ 1045 (1082)
|+.|....||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888875
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=7.2e-23 Score=215.65 Aligned_cols=436 Identities=15% Similarity=0.147 Sum_probs=273.5
Q ss_pred EEEec---CCCeEEEEeCCCeEEEEEccCCcee---eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC
Q 001415 426 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1082)
Q Consensus 426 l~~sp---dg~~las~~~d~~v~iwd~~~~~~~---~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~ 499 (1082)
..|++ ....||.+.+||.|.++|.....-- +++.....|...|..+.|.| |+. .|++++.|.++++||++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 66766 3457899999999999998754311 22335678999999999999 554 8999999999999999999
Q ss_pred ceeEE--eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccce
Q 001415 500 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1082)
Q Consensus 500 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i 577 (1082)
+++.. +.||.+.|.++||.+... ..+++|+.||.|.|||++......... +...++..|....
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~-------------~~~~~~~~~n~~p- 197 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEE-------------FDNRIYGRHNTAP- 197 (720)
T ss_pred eeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHH-------------HhhhhhccccCCC-
Confidence 98876 899999999999998755 689999999999999987533110000 0000000000000
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCe---EEEcCCCCEEEEEEC-CCcEEEEEecCCccc
Q 001415 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL 653 (1082)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~---~~~s~dg~~l~~~~~-dg~i~iwd~~~~~~~ 653 (1082)
.|. .- ....++-|-. +. ..|.+ +.+..|...||+++. |+.|+|||++.....
T Consensus 198 -----tps--kp----~~kr~~k~kA-----------~s--~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 198 -----TPS--KP----LKKRIRKWKA-----------AS--NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred -----CCC--ch----hhcccccccc-----------cc--CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 000 00 0001111111 11 12333 556667788888877 999999999876322
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccC-cccccceeEEEEccCCc
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKISRLIFTNSGN 732 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~ 732 (1082)
.+.-... ...+ +. ....-.+.++.....|.
T Consensus 254 ~r~ep~~-------~~~~------------------------------------------~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 254 YRQEPRG-------SDKY------------------------------------------PTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccCCCc-------ccCc------------------------------------------cCcccceeeeEEEEecCCCC
Confidence 2111100 0000 00 00233567778888889
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEE
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISL 811 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~i 811 (1082)
++++.+.|+.|++|++......+.+...... ....-..-..+||+.++++|+ |....+
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~---------------------~~sf~vks~lSpd~~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKL---------------------NSSFYVKSELSPDDCSLLSGSSDEQAYI 343 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcc---------------------cceeeeeeecCCCCceEeccCCCcceee
Confidence 9999999999999998866554433321110 011112235689999999997 799999
Q ss_pred EecCCCee-EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee--------------eeeecccccCEEEE
Q 001415 812 FNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------------KSKLKGHSKRITGL 876 (1082)
Q Consensus 812 wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--------------~~~l~~h~~~V~~l 876 (1082)
|.+.+.+. ...+.+|...|++++|.|..-.-+|++++|..++||++..+-. ..++++|.-.+..+
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv 423 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNV 423 (720)
T ss_pred eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccc
Confidence 99987654 4567789999999999996666778889999999999965422 22345555555555
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE---e--cCeEEEEEccCc
Q 001415 877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---H--ETQLAIFETTKL 951 (1082)
Q Consensus 877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~---~--d~~i~iwd~~~~ 951 (1082)
.++-.+.+.... .+..++|... ..++..|++.-...+ . .-.|...+....
T Consensus 424 ~ss~~~t~~~pR--~~~~r~~ssP-----------------------~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~ 478 (720)
T KOG0321|consen 424 NSSLRKTYKDPR--EGMNRISSSP-----------------------VSLACSPSGASDDCGYGVTDQTSGIVVFPTKRN 478 (720)
T ss_pred cccccccccchh--hhccccccCc-----------------------cchhcCcCCcccccCCCcccccccceecchhcc
Confidence 444333322221 3334444322 334445554444431 1 123444444443
Q ss_pred ceeeeeccCCCCcceeEEEEcCCCceEEEeec-----------CCcEEEEecCCcee
Q 001415 952 ECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVCVFSAANLKL 997 (1082)
Q Consensus 952 ~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~-----------dg~v~vwd~~~~~~ 997 (1082)
+....-...+|...|+...+++-+..+++++- ++.+++|.......
T Consensus 479 ~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pp 535 (720)
T KOG0321|consen 479 KPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPP 535 (720)
T ss_pred CccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCc
Confidence 33333333356677777778887778888887 88888887655433
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.2e-22 Score=190.04 Aligned_cols=323 Identities=15% Similarity=0.203 Sum_probs=226.3
Q ss_pred ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CC
Q 001415 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 432 (1082)
Q Consensus 354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 432 (1082)
.-.|.+.|+++.+.+..-+++++|+.||.|.+||++.-.......+-. ...|....+ ...+|.-.|..+-|-| |.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~v~~~--h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCIVAKQ--HENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeeecccc--CCccceeeeeeeEEeeecC
Confidence 345999999999999665579999999999999997644211100000 001111111 2568999999999999 88
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCC-ceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
..+.+++.|.+++|||..+-+... .+. -.+.|.+-+|||-.. .-++|+|..|-.|++.|+.+|.+-+++.||.+.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred ceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 899999999999999999876543 232 356788888888654 337888888999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
|.++.|+|..+ -.|++|+.||.|++||++..
T Consensus 191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra------------------------------------------------ 221 (397)
T KOG4283|consen 191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRA------------------------------------------------ 221 (397)
T ss_pred eEEEEeccCce-eEEEecCCCceEEEEEeecc------------------------------------------------
Confidence 99999998776 68999999999999998741
Q ss_pred EeCCCeEEEEECCCcceEEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccc
Q 001415 592 AGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1082)
.|..++.|...++....++ ...+...+..++|+.+|.++++.+.|..+++|+..+|....+.+......... ..+
T Consensus 222 ---sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~ 297 (397)
T KOG4283|consen 222 ---SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFA 297 (397)
T ss_pred ---cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc-cce
Confidence 1334455544433322222 22334468999999999999999999999999999886555544322111110 112
Q ss_pred cCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415 671 SKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748 (1082)
Q Consensus 671 ~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 748 (1082)
+. .. +.+...++.--.++.+.++++-++....... .|...|.+.++.|+-+...++..|+.+..|-.
T Consensus 298 ~~---~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 298 VH---IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EE---Ee-ecccceEEEEecCCeEEEEEccCceEEEeee-------cccceeeEEeecCchhhhhccccCCccccccc
Confidence 21 11 2233333333334555555554432222111 16778899999999999999999999999954
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=204.57 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=177.2
Q ss_pred CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--
Q 001415 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-- 497 (1082)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-- 497 (1082)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999999999999999999887 6789999999999999999 89999999999999874
Q ss_pred -------CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeee
Q 001415 498 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1082)
Q Consensus 498 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~ 570 (1082)
+-++++.+..|.-+|+++...+.+...++++++.|.++++||+..+.....+..
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------------------- 216 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------------------- 216 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-------------------
Confidence 346788999999999999988776667999999999999999987654443322
Q ss_pred cccccceeEEEecCCCCEEEEEeCCCeEEEEECCC----------------cceEEEEecCCCCCCcCeEEEcCCCCEEE
Q 001415 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634 (1082)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~i~~~~~s~dg~~l~ 634 (1082)
...+.+++++|-+..+++|+++|.|.+.++.. +..+..+.+|.+...|+|++++-||.+|+
T Consensus 217 ---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 217 ---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 22455666666666888888888888877643 22344555666556899999999999999
Q ss_pred EEECCCcEEEEEecCCccceeecccccc
Q 001415 635 VSTNDNGIKILATSDGIRLLRTFENLAY 662 (1082)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1082)
+|+.||.+.|||+.+. ++++++.....
T Consensus 294 SGd~dg~VcvWdi~S~-Q~iRtl~~~kg 320 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK-QCIRTLQTSKG 320 (476)
T ss_pred eeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence 9999999999999877 66666654333
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.4e-22 Score=216.39 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=201.1
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
|....+.++|.|+|..|++++.||.|++|+.......|+.- + .+...|.+++. +
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti----------~--------------~~g~~v~~ia~--~ 65 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI----------D--------------ISGELVSSIAC--Y 65 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh----------h--------------ccCceeEEEee--c
Confidence 77788999999999999999999999999765432111100 0 03445555554 4
Q ss_pred CCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415 798 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 876 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 876 (1082)
+.++++++ +++|.+|.+.++..-..+....-++++++|+- +|.++|.|++|-.|++-++.+......+++|.++|.+|
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 45777777 69999999998876655555667899999999 99999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEE-EEEecCeEEEEEccCcceee
Q 001415 877 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF-LVVHETQLAIFETTKLECVK 955 (1082)
Q Consensus 877 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l-~~~~d~~i~iwd~~~~~~~~ 955 (1082)
.|+|.+.+||+.+.||.|++|++.++......-.............+..++|+|+|..+ +.+.|+.|++|+...+....
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF 224 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe
Confidence 99999999999999999999999987653321111111111112456789999995555 45899999999999999998
Q ss_pred eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415 956 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 956 ~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~ 994 (1082)
.+....|...+..++|||+|+|||+++-||.|.|||.++
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 888877777799999999999999999999999999997
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.2e-22 Score=207.18 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=220.6
Q ss_pred cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCC
Q 001415 679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 758 (1082)
Q Consensus 679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 758 (1082)
+...+.+.+|+. |.|++||+...........+.... ..+.|+++...|||+.|++++.-.++.|||+........
T Consensus 428 S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik-- 502 (705)
T KOG0639|consen 428 SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-- 502 (705)
T ss_pred cCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEeccccceeeeeeccCCCcchh--
Confidence 556666777766 899999998764444443333322 678899999999999999999999999999874322110
Q ss_pred cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEECCCCCCeeEEEEec
Q 001415 759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 837 (1082)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp 837 (1082)
..+.. ..-...+++.+||.++.+++ +||.|.|||+.+...++.|++|...+.|+.+++
T Consensus 503 -------------------aelts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 503 -------------------AELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred -------------------hhcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 01111 23446678999999987776 489999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC
Q 001415 838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 917 (1082)
Q Consensus 838 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 917 (1082)
||..|-+|+-|.+||-||+++++.+.... ..+.|.++..+|.+.+|+.|-.++.+.|-.....++.. +.. |.
T Consensus 562 -dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq---lhl---he 633 (705)
T KOG0639|consen 562 -DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---LHL---HE 633 (705)
T ss_pred -CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcccee---ecc---cc
Confidence 99999999999999999999987665543 45779999999999999999999988888777644321 111 12
Q ss_pred CCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415 918 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 992 (1082)
Q Consensus 918 ~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~ 992 (1082)
..|.++.|++-|+++++ +.|+-+..|...-|..+.... ..+.|.+..+|.|.+|++||+.|....||.+
T Consensus 634 ---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 ---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---cEEEEEEecccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 56899999999999999 799999999998888876655 2789999999999999999999999888875
No 135
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.2e-22 Score=204.89 Aligned_cols=234 Identities=20% Similarity=0.328 Sum_probs=183.1
Q ss_pred cceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1082)
Q Consensus 349 ~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1082)
+.-.++.+|+++-+.++|++...-.|++|+.|++|++||+....... .......++.+|+..|..++|
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhc
Confidence 33458889999999999999988789999999999999997654421 111223358999999999999
Q ss_pred ec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-CceeEEee
Q 001415 429 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFE 506 (1082)
Q Consensus 429 sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~ 506 (1082)
+| +...+++++.|+.+.|||+.++ ..+......+|.+.|.|++|+|-+.. +|||||.|++|++||+++ .++++++.
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceecc
Confidence 99 7778999999999999999964 33334467899999999999998887 899999999999999987 45789999
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
+|...|..+.|+|..+ ..|++++.|+.+.+||+..-...............+ ....|.+...+..+.|+|..
T Consensus 314 ~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred CCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCC
Confidence 9999999999999776 699999999999999998644433211111111111 22233334467778888887
Q ss_pred CEE-EEEeCCCeEEEEECC
Q 001415 587 NRF-LAAGDDFSIKFWDMD 604 (1082)
Q Consensus 587 ~~l-~~~~~dg~i~iwd~~ 604 (1082)
.++ +++++|+.+.||.+.
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 755 567899999999875
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.3e-20 Score=204.23 Aligned_cols=279 Identities=16% Similarity=0.226 Sum_probs=200.5
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEecCCccceeeccccccccc
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1082)
..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..++. ....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLP------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCc-EEEecc-------
Confidence 3578889999999999999998888875433 6789999999877 456678889999876541 100000
Q ss_pred ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415 666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 745 (1082)
Q Consensus 666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 745 (1082)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-e-CCeEEEEecCCCeeEEEE
Q 001415 746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATF 823 (1082)
Q Consensus 746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~~ 823 (1082)
....+..++++|+++.++++ . ++.+++||+.+.+.+..+
T Consensus 71 ---------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 71 ---------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred ---------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 00112345677777766544 3 578999999887777766
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 001415 824 MPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG 901 (1082)
Q Consensus 824 ~~~~~~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~ 901 (1082)
.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ ..++.|.+||+.+
T Consensus 112 ~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 112 PV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 53 33468899999 888888888765 567789988877655432 2345789999999988554 4689999999998
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE--EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415 902 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 979 (1082)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 979 (1082)
++............+. .......++|+|+++++++ +.++.+.+||..+++.+..+. +...+.+++|+|+|++|+
T Consensus 189 ~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 189 RKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred ceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEE
Confidence 6543221111111110 0122357899999998655 356789999999888776553 234789999999999998
Q ss_pred Eee-cCCcEEEEecCCceeeeeeC
Q 001415 980 ACF-LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 980 t~s-~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
+++ .+|.|++||+.+++.+.++.
T Consensus 265 ~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 265 TTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEE
Confidence 864 68999999999999998876
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.8e-20 Score=203.54 Aligned_cols=294 Identities=13% Similarity=0.145 Sum_probs=203.6
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+|+. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999888665 455554 4678999999984 346778899999999999988887765544
Q ss_pred eEEEeeeecCCceEE-EEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 512 VYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
+..++|+++. +.+ ++++.++.+++||+.+......+.. ...+. .++++|++..++
T Consensus 75 ~~~~~~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~---------------------~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPE---------------------GMAVSPDGKIVV 130 (300)
T ss_pred ccEEEECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcc---------------------eEEECCCCCEEE
Confidence 4566776543 555 4556689999999987544333321 11223 355555566787
Q ss_pred EEeCCC-eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEecCCccceeecccccccccccc
Q 001415 591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1082)
Q Consensus 591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1082)
++..++ .+.+||..+++......... ....++|+|+|++|++++ .++.|++||+.++. ....+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~---------- 196 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKIT---------- 196 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeee----------
Confidence 777654 57788998887766554322 357799999999886554 58899999987652 111110
Q ss_pred cccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415 669 ENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748 (1082)
Q Consensus 669 ~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 748 (1082)
+...+. ..
T Consensus 197 ----------------------------------------------------------~~~~~~------~~-------- 204 (300)
T TIGR03866 197 ----------------------------------------------------------FEIPGV------HP-------- 204 (300)
T ss_pred ----------------------------------------------------------eccccc------cc--------
Confidence 000000 00
Q ss_pred cccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe--eCCeEEEEecCCCeeEEEECCC
Q 001415 749 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA--SGGKISLFNMMTFKTMATFMPP 826 (1082)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~--sdg~i~iwd~~~~~~~~~~~~~ 826 (1082)
.......++|+|++++++++ .++.+.+||..+++....+. +
T Consensus 205 ------------------------------------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~ 247 (300)
T TIGR03866 205 ------------------------------------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V 247 (300)
T ss_pred ------------------------------------ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e
Confidence 01112356788888875443 35779999999888776553 3
Q ss_pred CCCeeEEEEecCCCcEEEEE-eCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415 827 PPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 880 (1082)
Q Consensus 827 ~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 880 (1082)
...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..++.. ...+.++|+|
T Consensus 248 ~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 248 GQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 45789999999 78888776 56899999999999999998865 5558888875
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.5e-21 Score=187.12 Aligned_cols=283 Identities=17% Similarity=0.157 Sum_probs=209.6
Q ss_pred cCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEc
Q 001415 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1082)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~ 496 (1082)
....+.|+.+.|+|.+..|++++-||++++|++....... .-.|..++.+++|.++.. +++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3457799999999999999999999999999999875333 335899999999998665 899999999999999
Q ss_pred cCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccc
Q 001415 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1082)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~ 576 (1082)
.++..... ..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++
T Consensus 83 n~~~~~~i-gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~----------------- 141 (323)
T KOG1036|consen 83 NTGNEDQI-GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM----------------- 141 (323)
T ss_pred cCCcceee-ccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE-----------------
Confidence 98876554 4599999999987554 479999999999999998633333222221 33333
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCc---cc
Q 001415 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI---RL 653 (1082)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~---~~ 653 (1082)
+-.++.|++|+.+..+.+||+++...........-...++++++-|++.-.++++-||.|.+=.+.... ..
T Consensus 142 ------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 142 ------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ------eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 333457999999999999999986654433322223357899999988889999999999876655441 12
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 733 (1082)
.-.++.|........+.++-..+.++|--..+++|+.||.|.+||+...+...++.. ....|..++|+.+|..
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-------~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-------YETSISSLSFSMDGSL 288 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-------CCCceEEEEeccCCCe
Confidence 223444433322223334445555589999999999999999999986544433332 3567999999999999
Q ss_pred eeecccC
Q 001415 734 ILALASN 740 (1082)
Q Consensus 734 l~~~~~d 740 (1082)
|+.++.-
T Consensus 289 LAia~sy 295 (323)
T KOG1036|consen 289 LAIASSY 295 (323)
T ss_pred EEEEech
Confidence 9887764
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=5.9e-21 Score=182.29 Aligned_cols=308 Identities=14% Similarity=0.204 Sum_probs=227.0
Q ss_pred ccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccCCceee------------EEEEeeccccCeeEEEecCCCCceEE
Q 001415 416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR------------QHLEIDAHVGGVNDIAFSHPNKQLCV 482 (1082)
Q Consensus 416 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~------------~~~~~~~h~~~V~~l~fs~dg~~~~l 482 (1082)
...|.+.|+++.+.+ .|+|+++|+.||.|.+||+++..... ...--.+|.-.|.++.|-|-+.. ++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 567999999999999 89999999999999999998654110 01112468889999999997666 79
Q ss_pred EEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCc-eEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEE
Q 001415 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1082)
Q Consensus 483 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 561 (1082)
.+++.|.+++|||..+-+....|+ ..+.|.+-+++|-... -++++|..|-.|++.|+.++.....+.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999999998888887 6678888888776543 36677777889999999999999999999999999999
Q ss_pred ccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1082)
Q Consensus 562 s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 640 (1082)
+|.... .|++|+.||.|++||++.. .+.
T Consensus 197 sp~~e~--------------------vLatgsaDg~irlWDiRrasgcf------------------------------- 225 (397)
T KOG4283|consen 197 SPSSEW--------------------VLATGSADGAIRLWDIRRASGCF------------------------------- 225 (397)
T ss_pred ccCcee--------------------EEEecCCCceEEEEEeeccccee-------------------------------
Confidence 988763 4778999999999998642 222
Q ss_pred cEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCccccc
Q 001415 641 GIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 720 (1082)
Q Consensus 641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 720 (1082)
++.|..+++.+. .++ ....|.+
T Consensus 226 --~~lD~hn~k~~p-~~~-------------------------------------------------------~n~ah~g 247 (397)
T KOG4283|consen 226 --RVLDQHNTKRPP-ILK-------------------------------------------------------TNTAHYG 247 (397)
T ss_pred --EEeecccCccCc-ccc-------------------------------------------------------ccccccc
Confidence 222222221000 000 0012788
Q ss_pred ceeEEEEccCCceeeecccCCeEEEeeccccccCC--CCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 721 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS--SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 721 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
.+..++|+.++.++++++.|..+++|+...+.... .+.... +..++ -.+. +. +-+.
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-------n~~~~-------------~~~~-~~-~~~s 305 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-------NQTTS-------------FAVH-IQ-SMDS 305 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-------ccccc-------------ceEE-Ee-eccc
Confidence 89999999999999999999999999876543211 111110 00000 0000 11 2222
Q ss_pred C-eEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEec
Q 001415 799 S-YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 857 (1082)
Q Consensus 799 ~-~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 857 (1082)
. ++..-.++.+.++++-++..++.+..|...+.|.++-| +-+...+|..|+.|..|-.
T Consensus 306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCccccccc
Confidence 2 22222468899999999999999999988899999999 7888899999999999976
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=186.93 Aligned_cols=299 Identities=12% Similarity=0.176 Sum_probs=207.8
Q ss_pred CCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1082)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1082)
+.|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...-+ ++.+|..+|++
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 34667778888877 89999999999 59999999999999998865332 58999999999
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001415 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1082)
Q Consensus 426 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 505 (1082)
++||+||+.|++++.|..|.+||+..|.++++. ....+|+.+.|.|-..+..+| .-.+..-.+-++..++...--
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999977632 246799999999987763444 334444555555543221111
Q ss_pred ecCCcC--eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC-CceEEEEEccCCCeeeecccccceeEEEe
Q 001415 506 EGHEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 506 ~~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
....+. +.+-+-.++..|+++++|...|.+.++|..+.+....+.... ..|..+.++.
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~------------------- 206 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR------------------- 206 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-------------------
Confidence 111111 111111245667899999999999999999877666555443 4444444444
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCc-------ce--EEEEecCCCCCCcCeEEEcCCCCEEEEEEC-CCcEEEEEecCCcc
Q 001415 583 DTTKNRFLAAGDDFSIKFWDMDSV-------QL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIR 652 (1082)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~-dg~i~iwd~~~~~~ 652 (1082)
.|..|+.-+.|..||.|++..- +. .+.++---+...-.+++|+.+|.|++.++. ...++||....| .
T Consensus 207 --~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-s 283 (405)
T KOG1273|consen 207 --KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-S 283 (405)
T ss_pred --cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-c
Confidence 4458999999999999997621 11 111110001112467899999999988764 467999999888 7
Q ss_pred ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecc
Q 001415 653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE 701 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 701 (1082)
+++.+.+....... .+.+ .|-...+++- ..|.+++|....
T Consensus 284 LVKILhG~kgE~l~-DV~w-------hp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 284 LVKILHGTKGEELL-DVNW-------HPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eeeeecCCchhhee-eccc-------ccceeeeeec-cCCceEEEEeec
Confidence 88888876643321 2233 3333334444 678999998754
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=198.89 Aligned_cols=297 Identities=17% Similarity=0.266 Sum_probs=216.2
Q ss_pred EEeCC-CcEEEEEccCCceeEEeecC-CcCeEEEeeeecCCceEEEEecC-CCcEEEEecCCCCceeeecCCCCceEEEE
Q 001415 484 TCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1082)
Q Consensus 484 s~s~d-~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 560 (1082)
+++.| .++.+||+++|....++++. ...-.++... ++.+++++.. ...+.+|.+...........-.+.+.+++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 34444 45999999999999988865 2222222211 1145666654 45788998876554443333444455555
Q ss_pred EccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1082)
Q Consensus 561 ~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 640 (1082)
-+|+| .+++.|+..|.|++|.+.+|.++..+..|-. .|+++.|+.||.++++|+.||
T Consensus 89 s~n~G---------------------~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ--~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 89 SSNLG---------------------YFLLAGTISGNLYLWELSSGILLNVLSAHYQ--SITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cCCCc---------------------eEEEeecccCcEEEEEeccccHHHHHHhhcc--ceeEEEEeCCCcEEEecCCCc
Confidence 55554 4788887999999999999999999866544 899999999999999999999
Q ss_pred cEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCccccc
Q 001415 641 GIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 720 (1082)
Q Consensus 641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 720 (1082)
.|.+|.+.+-. .....+. -.-++.|. .|.-
T Consensus 146 ~V~vW~l~~lv---~a~~~~~-----------------------------~~p~~~f~------------------~Htl 175 (476)
T KOG0646|consen 146 AVLVWLLTDLV---SADNDHS-----------------------------VKPLHIFS------------------DHTL 175 (476)
T ss_pred cEEEEEEEeec---ccccCCC-----------------------------ccceeeec------------------cCcc
Confidence 99999875431 1111100 01112221 1777
Q ss_pred ceeEEEEccCC--ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 721 KISRLIFTNSG--NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 721 ~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
.|+++...+.| .++++++.|.++++||+.. |.++.... ....+.+++++|-+
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~----fp~si~av~lDpae 229 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT----FPSSIKAVALDPAE 229 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----cCCcceeEEEcccc
Confidence 78888777653 5799999999999997653 33332222 56789999999999
Q ss_pred CeEEEee-CCeEEEEecCCC----------------eeEEEECCCCC--CeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415 799 SYVMSAS-GGKISLFNMMTF----------------KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 859 (1082)
Q Consensus 799 ~~l~~~s-dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 859 (1082)
+.+..|+ +|.|.+.++... .....+.+|.+ .|+|++++- |+.+|++|+.||.|+|||+.+
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecch
Confidence 9999987 699888876532 34456778888 899999999 999999999999999999999
Q ss_pred ceeeeeecccccCEEEEEEeCCCC
Q 001415 860 DEVKSKLKGHSKRITGLAFSHALN 883 (1082)
Q Consensus 860 ~~~~~~l~~h~~~V~~l~~s~d~~ 883 (1082)
.++++++..-.++|+.+.+.|-.+
T Consensus 309 ~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 309 KQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred HHHHHHHhhhccccceeEeecccc
Confidence 999999987889999999976543
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.6e-21 Score=202.17 Aligned_cols=314 Identities=17% Similarity=0.219 Sum_probs=226.8
Q ss_pred EEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEE
Q 001415 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1082)
Q Consensus 458 ~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 537 (1082)
...+.||++.|.++...|.|. +|++|+.||+|+||.+.+|.|++++. ..+.|.+++|+|.++...|+++-... +.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 346789999999999999999 89999999999999999999999887 56789999999998876666665544 554
Q ss_pred EecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE----eCCCeEEEEECCCcce----E
Q 001415 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----L 609 (1082)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~ 609 (1082)
-+..-+..... +. ....|+++ ..++.+..|.-...+. +
T Consensus 469 vnp~~G~~~e~----------------------~~------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v 514 (733)
T KOG0650|consen 469 VNPIFGDRLEV----------------------GP------------TKELLASAPNESEPDAAVVTWSRASLDELEKGV 514 (733)
T ss_pred eCccccchhhh----------------------cc------------hhhhhhcCCCccCCcccceeechhhhhhhccce
Confidence 44322211100 00 00012222 2355677786542211 1
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCcee
Q 001415 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRI 686 (1082)
Q Consensus 610 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 686 (1082)
...-.+ ...|..+.|+..|.||++...+ ..|.|.++..... ...|
T Consensus 515 ~~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------------Q~PF--------------- 562 (733)
T KOG0650|consen 515 CIVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------------QSPF--------------- 562 (733)
T ss_pred EEEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------cCch---------------
Confidence 122112 2368999999999999987654 3355555433210 0001
Q ss_pred eeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCcc
Q 001415 687 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 766 (1082)
Q Consensus 687 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 766 (1082)
+...+.|.++.|+|...++++++.. .|++||+..
T Consensus 563 -----------------------------~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k---------------- 596 (733)
T KOG0650|consen 563 -----------------------------RKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK---------------- 596 (733)
T ss_pred -----------------------------hhcCCceeEEEecCCCceEEEEecc-ceEEEehhH----------------
Confidence 1145678899999999888877665 677776653
Q ss_pred ccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecC-CCeeEEEECCCCCCeeEEEEecCCCcEEE
Q 001415 767 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIA 844 (1082)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la 844 (1082)
+.++...++ ....|..++.+|.|.-|+.|+ |+.+..+|+. +.++.+++..|...+++|+|++ .-.++|
T Consensus 597 ------qelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfa 666 (733)
T KOG0650|consen 597 ------QELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFA 666 (733)
T ss_pred ------HHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceee
Confidence 222222222 467899999999999888887 7999999998 4467788999999999999999 888999
Q ss_pred EEeCCCcEEEEecc------cc---eeeeeecccccC----EEEEEEeCCCCEEEEEeCCCcEEEE
Q 001415 845 IGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAFSHALNVLVSSGADSQLCVW 897 (1082)
Q Consensus 845 sg~~dg~v~iwd~~------~~---~~~~~l~~h~~~----V~~l~~s~d~~~l~s~s~Dg~i~vw 897 (1082)
+|+.||++.|+.-. .. -.+..+++|... |....|+|...+|++++.||+|++|
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999998532 22 245678899876 8999999999999999999999998
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=192.06 Aligned_cols=292 Identities=15% Similarity=0.242 Sum_probs=220.4
Q ss_pred ccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 465 ~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1082)
.++|++|.|.|... ++++++.|++++||-+. ....++.+.-...+|.+.+|++.+. ..+++++....+..||+.+
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence 46899999999998 89999999999999875 3456677766778999999987543 3899999999999999976
Q ss_pred CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcC
Q 001415 543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1082)
Q Consensus 543 ~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 622 (1082)
.+....-. ..|.....+....+++++++++..|..|.|.+....+++.+.+++..+. |.
T Consensus 290 ak~~k~~~------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~ 348 (514)
T KOG2055|consen 290 AKVTKLKP------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VS 348 (514)
T ss_pred cccccccC------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---Ee
Confidence 44332111 1122233455566677777999999999999999999999999987765 88
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415 623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 623 ~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~ 702 (1082)
.++|+.|++.|++.+.+|.|.+||++.. .+.+.+....
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G----------------------------------------- 386 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDG----------------------------------------- 386 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecC-----------------------------------------
Confidence 9999999999999999999999999876 3333222110
Q ss_pred CCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCC
Q 001415 703 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 782 (1082)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1082)
.-.-++++.+.++.++++++..|.|-|||....-.+...+.+...
T Consensus 387 ----------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~------------------- 431 (514)
T KOG2055|consen 387 ----------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV------------------- 431 (514)
T ss_pred ----------------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-------------------
Confidence 001245677788888888888888888876533221111111110
Q ss_pred CCCCCCccEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCC---CCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 783 SNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 783 ~~~~~~i~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
..-...|+++.|++|.++||.++ .+.+++-.+.+......+.... +.|+|++||| .+.++|.|..+|.|.+|.
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEe
Confidence 11356799999999999999998 4679999998877776665443 4589999999 888999999999999998
Q ss_pred cc
Q 001415 857 VR 858 (1082)
Q Consensus 857 ~~ 858 (1082)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 64
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=3.1e-20 Score=195.81 Aligned_cols=232 Identities=12% Similarity=0.165 Sum_probs=158.1
Q ss_pred ceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce
Q 001415 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1082)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~ 501 (1082)
.|..++|-|||..|+.+. +..+.+||...|..+. ++++|.+.|.|++|+.||+ .++||+.|+.|.+|+-+-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccc-
Confidence 899999999999998875 4569999999999777 8999999999999999999 79999999999999854322
Q ss_pred eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
+-.. .|.+.|.++.|+|-. +.|++++.. ..-+|..+. +.+..-.....+.+++
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~q-----------------------K~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQ-----------------------KSVSKHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhh-----------------------hhHHhhhhheeEEEee
Confidence 2222 399999999998765 678887753 345664432 2111112223556667
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC-----CEEEEEECCCcEEEEEecCCccceee
Q 001415 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLRT 656 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg-----~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1082)
|+.||.+++.|-.+|+|.+-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+... .+..
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk 217 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGK 217 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecc
Confidence 7777779999999999999875433334333434455689999999953 35666666666666655322 1110
Q ss_pred cccccccccccccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 657 FENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
-+ .+.|....+...++|++++.|+.|+.+++|.
T Consensus 218 ~r---------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 218 DR---------ALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred cc---------cCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 00 3344333334455555555555555555554
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=5.5e-21 Score=193.98 Aligned_cols=295 Identities=17% Similarity=0.232 Sum_probs=213.6
Q ss_pred CCCCceEEEEecCCC-eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCe
Q 001415 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1082)
Q Consensus 357 h~~~v~~~~~spdg~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1082)
+..+|++++|+|... .++|+|+..|.|-+||+.+.+.-.... ..+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 889999999999886 789999999999999996433322111 13789999999999999 6678
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce-eEEeecCCcCeE
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 513 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~h~~~v~ 513 (1082)
+.+.+.||+|++-|++++..- ....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 889999999999999976422 1113333455678889988888 577777777999999998654 666777999999
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCcee----eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1082)
+++++|-.. .++++++.|++.+|||++...... ....|... +.+..|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs---------------------V~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS---------------------VNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccce---------------------eeeeEEcCCCCce
Confidence 999998765 799999999999999998654332 22233444 4445555555579
Q ss_pred EEEeCCCeEEEEECC----CcceEEEEecCCCC---CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccc
Q 001415 590 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1082)
Q Consensus 590 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1082)
++.+.|..|+|||.. ...+...+...... -.....+|.|+..++++|-.-..|-|+|...+ +.+..+.....
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el~~P~~ 463 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCELHDPES 463 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeeccCccc
Confidence 999999999999983 33344444322211 12345789999999999999999999998777 55555444443
Q ss_pred cccccccccCCCCccccCCCCcee-eeccCCceeEEEe
Q 001415 663 DASRTSENSKNGDVRSLADVKPRI-TEESNDKSKVWKL 699 (1082)
Q Consensus 663 ~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~iw~~ 699 (1082)
........| .|-+..++ -++..|.|.+|.-
T Consensus 464 ~tI~~vn~~-------HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 STIPSVNEF-------HPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccccceee-------cccccceeccCCccceEEEEec
Confidence 222223444 66666444 4455678888754
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=6.9e-21 Score=200.88 Aligned_cols=290 Identities=13% Similarity=0.103 Sum_probs=206.8
Q ss_pred ceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEE
Q 001415 732 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 810 (1082)
Q Consensus 732 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~ 810 (1082)
..|+.+.++|.|.++|.....+.++.. .++.| ..|...|..+.|-|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~-----~lk~~--------------~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEER-----QLKKP--------------LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhh-----hhccc--------------ccccceeEeeccCCCceeEEEccCCceee
Confidence 457777888999999876544431111 11111 12899999999999666777776 68899
Q ss_pred EEecCCCeeEEE--ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce---------------------------
Q 001415 811 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 861 (1082)
Q Consensus 811 iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------------- 861 (1082)
+||+...++... +.+|.+.|.++||.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988877 889999999999999999999999999999999985221
Q ss_pred eeeeecccccCEEE---EEEeCCCCEEEEEeC-CCcEEEEEcCCcccccc-eeeeccCCCC--CCCCCCcEEEEcCCCcE
Q 001415 862 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQIPTGRT--PTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 862 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~-~~~~~~~~~~--~~~~~v~~~~fspdg~~ 934 (1082)
.+...++|...|.+ +.+..|...||++|. |+.|+|||+........ .......-+. ....++.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11122345555555 566678899999998 99999999987543221 1111111111 11134566666667788
Q ss_pred EEE-EecCeEEEEEccCcceeeeeccCCC--CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCC
Q 001415 935 FLV-VHETQLAIFETTKLECVKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1011 (1082)
Q Consensus 935 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h--~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1011 (1082)
|.+ +.|+.|+.|++.....-......++ ..--..-..|||+.+|++|+.|..+++|.+.+.+.--.+. .||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence 887 8999999999976554433332233 1122233579999999999999999999998876653322 143
Q ss_pred CCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1012 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1012 ~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
.+.+..+.|.|.+-.-++++++|-++++|++..+-
T Consensus 360 ---t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 ---TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ---ceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 34566899998766679999999999999997765
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4e-22 Score=212.98 Aligned_cols=236 Identities=12% Similarity=0.304 Sum_probs=206.3
Q ss_pred cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
..|...|.|+..-..++ .+++|+.|..+-+|.+.....+. .+.+|..+|.|+.|+++..+
T Consensus 25 ~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERL 84 (825)
T ss_pred hhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhh
Confidence 34889999999866667 69999999999999986544433 27899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 514 (1082)
|+.|+.+|+|++||++.++.++ ++.||...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..
T Consensus 85 laagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred hcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEE
Confidence 9999999999999999998887 8999999999999999999 7899999999999999999999999999999999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1082)
+.|.| +|.++++++.|.++++||+..++....|..|...+.++.|.|..- .++.|+.
T Consensus 160 l~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~---------------------Lla~Gs~ 216 (825)
T KOG0267|consen 160 LRLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV---------------------LLAPGSS 216 (825)
T ss_pred EeecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhh---------------------hhccCCC
Confidence 99865 558999999999999999998888888888887777766655443 6788999
Q ss_pred CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1082)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 640 (1082)
|+++++||+++.+.+...... ...|.+.+|+|++..+++|....
T Consensus 217 d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence 999999999999888877655 44799999999999998886543
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.7e-20 Score=194.71 Aligned_cols=322 Identities=14% Similarity=0.280 Sum_probs=232.0
Q ss_pred eeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCC--EEEEEECCCcEEEE
Q 001415 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL 645 (1082)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~l~~~~~dg~i~iw 645 (1082)
++.|| .+.+.++..+|.|.+|++|+.||+|+||.+.+|.++..+...+. |.+++|+|.+. .||++.... +.|.
T Consensus 395 vyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 395 VYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEecCc-eEEe
Confidence 34444 44788888999999999999999999999999999999987764 99999999654 455544443 6666
Q ss_pred EecCCccceeecccccccccccccccCCCCccccCCCCceee----eccCCceeEEEecccCCCC--ccccccccCcccc
Q 001415 646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRIT----EESNDKSKVWKLTELSEPN--QCRSLRLPENLRA 719 (1082)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~----~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~ 719 (1082)
+..-|.+..... ....++. ...+..+..|.-....... .+..+. |.
T Consensus 470 np~~G~~~e~~~-----------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~ 521 (733)
T KOG0650|consen 470 NPIFGDRLEVGP-----------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-----HP 521 (733)
T ss_pred Cccccchhhhcc-----------------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe-----cC
Confidence 544331111100 0111111 1223456677655332222 122222 78
Q ss_pred cceeEEEEccCCceeeecccC---CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415 720 TKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 796 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 796 (1082)
..|..+.|+..|.+|++...+ ..+.|+++..... .. .+. ...+.|.++.|+|
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s-------------------Q~----PF~--kskG~vq~v~FHP 576 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS-------------------QS----PFR--KSKGLVQRVKFHP 576 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEecccccc-------------------cC----chh--hcCCceeEEEecC
Confidence 899999999999999988774 5677776543211 10 111 1467788999999
Q ss_pred CCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccCEEE
Q 001415 797 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITG 875 (1082)
Q Consensus 797 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~ 875 (1082)
...++++++...|+|||+..+..+..+......|..++++| .|.-|+.|+.|+.+..+|+.-+ +..++++.|...|++
T Consensus 577 s~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 577 SKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred CCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 99999999999999999999888888888888899999999 8888888999999999999854 677889999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceee
Q 001415 876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 955 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~ 955 (1082)
++|++.-.++++|+.||++.|+.-.-.. -+++.+ -.+.
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~----Dl~qnp--------------------------------------liVP 693 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYN----DLLQNP--------------------------------------LIVP 693 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeeh----hhhcCC--------------------------------------ceEe
Confidence 9999999999999999999988422110 000000 0011
Q ss_pred eeccCCCC----cceeEEEEcCCCceEEEeecCCcEEEE
Q 001415 956 QWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 990 (1082)
Q Consensus 956 ~~~~~~h~----~~i~~l~~s~dg~~l~t~s~dg~v~vw 990 (1082)
.-...+|. ..|....|.|..-+|++++.||+|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11112443 348889999999999999999999998
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.5e-22 Score=212.61 Aligned_cols=237 Identities=18% Similarity=0.258 Sum_probs=201.9
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
...|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 55688899999987789999999999999999987655444 6889999999999999988 899999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
++.++.++++.||...+.++.|+|.. .+.++|+.|..+++||.+...+...+..|...+..+.|+|+|+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr--------- 167 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR--------- 167 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------
Confidence 99999999999999999999998765 7889999999999999998888888888777777777777776
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
+++.+++|.+++|||+..|+.+..+..|.. .+.++.|+|..-+++.|+.|+++++||+++- +.+.
T Consensus 168 ------------~v~~g~ed~tvki~d~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~ 232 (825)
T KOG0267|consen 168 ------------WVASGGEDNTVKIWDLTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVIS 232 (825)
T ss_pred ------------eeeccCCcceeeeecccccccccccccccc--cccccccCchhhhhccCCCCceeeeecccee-EEee
Confidence 889999999999999999999999987765 6888999999999999999999999999865 4444
Q ss_pred ecccccccccccccccCCCCccccCCCCceeeeccCC
Q 001415 656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESND 692 (1082)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 692 (1082)
........+. +..| .+++..+++|....
T Consensus 233 s~~~~~~~v~--~~~f-------n~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 233 SGKPETDGVR--SLAF-------NPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCccCCce--eeee-------cCCceeeecCchhh
Confidence 4444333333 5555 78888887776543
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2e-20 Score=201.97 Aligned_cols=284 Identities=15% Similarity=0.262 Sum_probs=206.2
Q ss_pred CCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc-CCceeeecccCCeEEEeeccccccCCCCC
Q 001415 680 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGK 758 (1082)
Q Consensus 680 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 758 (1082)
++-..++.++. ..++++.+........+..-.-........+..+.|.. +.++|++++.+|.|.+||+.....+
T Consensus 49 r~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn---- 123 (839)
T KOG0269|consen 49 RDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN---- 123 (839)
T ss_pred CCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccc----
Confidence 44444444443 45566666544333332221100011122344566653 3578999999999999998742111
Q ss_pred cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC-eEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe
Q 001415 759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH 836 (1082)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 836 (1082)
+.+. ...+|...+.++.|++-.. +|++|+ ||.|++||++..+-..++.+....|..|.|+
T Consensus 124 ---------------k~l~---~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 124 ---------------KLLT---VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred ---------------hhhh---HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 0100 1123999999999997554 677777 7999999999999999999988999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCC
Q 001415 837 PQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG 915 (1082)
Q Consensus 837 p~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 915 (1082)
|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|||||.|++|+||++.+.+......+...
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-- 263 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-- 263 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec--
Confidence 988899999999999999999864 67788899999999999999999999999999999999998655433333332
Q ss_pred CCCCCCCCcEEEEcCCCcEEE-EE---ecCeEEEEEccCcce-eeeeccCCCCcceeEEEEcC-CCceEEEeecCCcEEE
Q 001415 916 RTPTAQSDTRVQFHQDQIHFL-VV---HETQLAIFETTKLEC-VKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCV 989 (1082)
Q Consensus 916 ~~~~~~~v~~~~fspdg~~l~-~~---~d~~i~iwd~~~~~~-~~~~~~~~h~~~i~~l~~s~-dg~~l~t~s~dg~v~v 989 (1082)
..+..++|-|+..+.+ ++ .|-.|+|||+...-. ..++ ..|...++.++|-. |...|.+++.||+|..
T Consensus 264 -----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~--~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 264 -----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF--LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred -----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--eccCccccceeccCCCceeeEeecCccHHHH
Confidence 5689999999877654 43 678999999864432 2233 37899999999965 5667889999999876
Q ss_pred EecCCc
Q 001415 990 FSAANL 995 (1082)
Q Consensus 990 wd~~~~ 995 (1082)
-.+.+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555443
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.3e-19 Score=178.69 Aligned_cols=171 Identities=20% Similarity=0.262 Sum_probs=140.2
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
...+|..+.|.+++...+|||+.|..|+||.++.+..-... .... -...+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------~~V~-y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------MKVE-YLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------eeEE-EeecccCCcceeEEEEEcCCcCeee
Confidence 45789999999988755999999999999999765432200 0011 1225889999999999999999999
Q ss_pred EEeCCCeEEEEEcc--------C-----CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415 437 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 437 s~~~d~~v~iwd~~--------~-----~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~ 503 (1082)
+|+.+|.|.+|-.. + .+.......+.+|...|..++|+|++. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999776 3 222233446889999999999999999 89999999999999999999999
Q ss_pred EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecC
Q 001415 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 541 (1082)
.+.+|..-|..++|.|-. +++++-+.|...+.+.+.
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeee
Confidence 999999999999997655 799999998866666544
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.6e-17 Score=189.93 Aligned_cols=372 Identities=24% Similarity=0.419 Sum_probs=267.6
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc-eeeeeceeeeccCCCCcccccccccCCC-CceeEEEE-e
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 429 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s 429 (1082)
....|...+.++.|.+.+.. ++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 45669999999999999994 8888899999999998876 3321 33322 47777777 8
Q ss_pred cCCC-eEEEEeC-CCeEEEEEccC-CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC-CCcEEEEEccCCceeEEe
Q 001415 430 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 505 (1082)
Q Consensus 430 pdg~-~las~~~-d~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~-d~~i~vwd~~~~~~~~~~ 505 (1082)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. ++++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999997 44443 6889999999999999999 6788775 999999999999999999
Q ss_pred ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1082)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~ 584 (1082)
.+|...|.++.|.+... ..+++++.|+.|++||........ .+..+.... .. .|++
T Consensus 195 ~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~~ 251 (466)
T COG2319 195 AGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFSP 251 (466)
T ss_pred ccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eECC
Confidence 99999999999984432 255555999999999877443333 233333322 11 4555
Q ss_pred CCCEEEEEeCCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccc
Q 001415 585 TKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1082)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1082)
++..+++++.|+.+++|+...... +..+..+ ...+.++.|+|++..+++++.|+.+.+|+..+..... ...
T Consensus 252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~----- 323 (466)
T COG2319 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-SLT----- 323 (466)
T ss_pred CCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE-Eee-----
Confidence 555788999999999999987665 4444333 4478899999988888888888889999765541110 000
Q ss_pred ccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeE
Q 001415 664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 743 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 743 (1082)
. .
T Consensus 324 -----------------------------------~----------------~--------------------------- 325 (466)
T COG2319 324 -----------------------------------L----------------K--------------------------- 325 (466)
T ss_pred -----------------------------------e----------------c---------------------------
Confidence 0 0
Q ss_pred EEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe--eCCeEEEEecCCCeeEE
Q 001415 744 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA--SGGKISLFNMMTFKTMA 821 (1082)
Q Consensus 744 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~--sdg~i~iwd~~~~~~~~ 821 (1082)
.|...+..+.+.+++..++.+ .++.+.+|+........
T Consensus 326 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 365 (466)
T COG2319 326 ----------------------------------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365 (466)
T ss_pred ----------------------------------------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeE
Confidence 022223334442121233333 24566677777665222
Q ss_pred EECCCCCCeeEEEEecCCCcEEEE-EeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415 822 TFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 900 (1082)
Q Consensus 822 ~~~~~~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 900 (1082)
...... .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|+..
T Consensus 366 ~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 366 TLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred EecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 222222 288899988 7 55554 7889999999999888777766554789999999999999999999999999988
Q ss_pred C
Q 001415 901 G 901 (1082)
Q Consensus 901 ~ 901 (1082)
.
T Consensus 443 ~ 443 (466)
T COG2319 443 T 443 (466)
T ss_pred C
Confidence 7
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=179.07 Aligned_cols=269 Identities=15% Similarity=0.248 Sum_probs=193.7
Q ss_pred CcceeeecCCCCCceEEEEecCCC-eEEEEEcCCCcEEEEEccccce-eeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415 348 PKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRER-LVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1082)
Q Consensus 348 ~~~~~~~~~h~~~v~~~~~spdg~-~llasgs~dg~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1082)
|..-.+.++|.+.++.+.-++-|+ .+.|+=+..|.|.||++...-. +......+.+ +...+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444457778999999999998763 3677778889999999854211 1111111111 111122247899999999
Q ss_pred EEEec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC---ce
Q 001415 426 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AK 501 (1082)
Q Consensus 426 l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~---~~ 501 (1082)
|+||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||.... +|+|||.||+|+|||++++ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 99999 3335788888888999999987654444457789999999999999887 8999999999999999988 34
Q ss_pred eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC---ceeeecCCCCceEEEEEccCCCeeeeccccccee
Q 001415 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1082)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~ 578 (1082)
+.+ +.|.+.|+.+.|+... .+|++|+.||+++|||++..+ ++..+..|..+|+++.|+|...
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------------ 360 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------------ 360 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------------
Confidence 444 7899999999997655 499999999999999998643 3446666777777777766543
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcce----------------EEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCc
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNG 641 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~ 641 (1082)
..|++++.|..|.+||+....- -+.+-.|.+...+..+.|++. ..+|++.+.||.
T Consensus 361 --------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 361 --------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred --------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 3578889999999999853211 112223444446788999984 346666666663
Q ss_pred EEEE
Q 001415 642 IKIL 645 (1082)
Q Consensus 642 i~iw 645 (1082)
.||
T Consensus 433 -nVf 435 (440)
T KOG0302|consen 433 -NVF 435 (440)
T ss_pred -eEE
Confidence 444
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-20 Score=203.31 Aligned_cols=244 Identities=13% Similarity=0.221 Sum_probs=189.8
Q ss_pred CceEEEEecCCCeEEEEEcCCCcEEEEEccc---cceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCeE
Q 001415 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS---RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1082)
Q Consensus 360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1082)
.+..|+|+.--..|||+++..|.|.+||+.. .+.+. .+..|+..|+++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 4455677754455899999999999999976 22221 4889999999999999 56788
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-CceeEEeecCCcCeEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYS 514 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~ 514 (1082)
++|+.||+|++||+...+... ++.+....|..|.|+|.... .++++.+.|.+++||++. .++...+.+|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999887655 67788999999999997666 899999999999999986 4567788999999999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecC-CCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
+.|+| ++.+||+||.|+.|+|||+.+.+....... ...++..+.|-|+.. .+|++++
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcs 283 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCS 283 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhh
Confidence 99998 447999999999999999987554433332 234566667766654 2456554
Q ss_pred --CCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCC
Q 001415 594 --DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 594 --~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
.|-.|+|||++.. -+..++..|.. .++.++|.. |...+.+++.||++..-...++
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 6889999999754 34556665554 678888866 5667888889988765444443
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-18 Score=167.04 Aligned_cols=285 Identities=15% Similarity=0.216 Sum_probs=190.7
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC-ceeeEEEEeeccccCeeEEEecCC--CCceEEEEEeCCCcE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTI 491 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~-~~~~~~~~~~~h~~~V~~l~fs~d--g~~~~l~s~s~d~~i 491 (1082)
+-.+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.... .........+.|.+.|..+.|.+. |+ .+|+++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 35689999999999999999999999999999996433 234445578899999999999764 56 89999999999
Q ss_pred EEEEccC---------CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEc
Q 001415 492 KVWDATN---------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1082)
Q Consensus 492 ~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 562 (1082)
.||.=.. -....++......|+.++|.|..-|-.+++++.||.+|||+.-........+... .+.-+ ..
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~-Ei~~~-~~ 163 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH-EIQNV-ID 163 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh-hhhhc-cC
Confidence 9997421 1233466677889999999999989999999999999999876543332221110 00000 00
Q ss_pred cCCCeeeecccccceeEEEecCC---CCEEEEEeCC-----CeEEEEECCCc--ceEEEEecCCCCCCcCeEEEcCC---
Q 001415 563 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDD-----FSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKD--- 629 (1082)
Q Consensus 563 ~d~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~d--- 629 (1082)
|- +.......|+.|++. ...|++|+.+ +.+.||....+ +....-...++..+|+.++|.|+
T Consensus 164 pp------~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 164 PP------GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred Cc------ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 11 111223344555543 2356666654 47888876543 33333333355568999999995
Q ss_pred -CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcc
Q 001415 630 -GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 708 (1082)
Q Consensus 630 -g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 708 (1082)
-..||+++.|| |+||.+......+..- + .. .++. -..+.+-.+.
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~e-e----~~-------------~~~~--------~~~l~v~~vs-------- 282 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEE-E----VL-------------APDL--------MTDLPVEKVS-------- 282 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhh-c----cc-------------CCCC--------ccccceEEee--------
Confidence 35799999999 9999987542211000 0 00 0000 0000000000
Q ss_pred ccccccCcccccceeEEEEccCCceeeecccCCeEEEeecc
Q 001415 709 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 749 (1082)
Q Consensus 709 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~ 749 (1082)
.+ ..|.++|..+.|+-.|..|.+.+.||.+++|...
T Consensus 283 ---~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 283 ---EL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ---ec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 01 2288999999999999999999999999999644
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=2.1e-19 Score=174.92 Aligned_cols=301 Identities=15% Similarity=0.209 Sum_probs=205.1
Q ss_pred cccceeEEEEcc----CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEE
Q 001415 718 RATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 793 (1082)
Q Consensus 718 ~~~~i~~~~~s~----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 793 (1082)
|..+|..++|++ +...+++......+.+|+..... +..+-.......+......++
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYTCS 96 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEEEE
Confidence 677889999984 33345555555677888664321 111111111223666667777
Q ss_pred eecCC----CeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee--
Q 001415 794 LSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 866 (1082)
Q Consensus 794 ~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-- 866 (1082)
|+-|- .++|+++ -|.|+|.|+.++++...+.+|...|+.+.+.|+..+++++++.|.+|++|++++..++..+
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 76543 3666666 5999999999999999999999999999999988899999999999999999999999887
Q ss_pred -cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccce-------------eeeccCCCCCC-------CCCCcE
Q 001415 867 -KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR-------------FLQIPTGRTPT-------AQSDTR 925 (1082)
Q Consensus 867 -~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~~~-------~~~v~~ 925 (1082)
.||.+.|.++.|+++|.+|+|+|.|.+|++|++...+..... .......|.+. ...|.+
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 579999999999999999999999999999999954321100 00111111100 012222
Q ss_pred EEEcCCCcEEEE-EecCeEEEEEc-cCcceeeeeccC-----------CCCcceeEEEE--cCCCceEEEeecCCcEEEE
Q 001415 926 VQFHQDQIHFLV-VHETQLAIFET-TKLECVKQWVPR-----------ESSAPITHATF--SCDSQLVYACFLDATVCVF 990 (1082)
Q Consensus 926 ~~fspdg~~l~~-~~d~~i~iwd~-~~~~~~~~~~~~-----------~h~~~i~~l~~--s~dg~~l~t~s~dg~v~vw 990 (1082)
+.|- |.++++ +-++.|..|.. +-.+.+...... -....|+-+.| .|-+++||.|...|.|.+|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 2222 567777 77889999987 222221111100 11345555554 5568899999999999999
Q ss_pred ecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415 991 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 991 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
|++..+....-. + .|+.....+...+|+. |+.+|+...+|++|.-||.-+
T Consensus 335 dL~~~ep~~~tt----l--~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 335 DLDNNEPPKCTT----L--THSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ECCCCCCccCce----E--Eeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEeec
Confidence 999877642111 1 1111113334778887 799999999999999998643
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-18 Score=168.01 Aligned_cols=260 Identities=13% Similarity=0.233 Sum_probs=191.5
Q ss_pred cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--CC
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG 432 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 432 (1082)
.+|.+-|.|+.|.+-|++ +|+++.|++|.|||.......-.. ....+.|.+.|..+.|-+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCcccc
Confidence 358999999999999997 999999999999997543322110 012568999999999977 69
Q ss_pred CeEEEEeCCCeEEEEEccC------CceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee----
Q 001415 433 SLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---- 502 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~------~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~---- 502 (1082)
+.+|+++.|+++.||.=.. +..-....++......|+++.|.|.-..+.+|+++.||.+|||+.-..-.+
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997521 122233446777788999999999877778999999999999987543222
Q ss_pred --EEee-------cCCcCeEEEeeeecCC-ceEEEEecCC-----CcEEEEecCCCCc----eeeecCCCCceEEEEEcc
Q 001415 503 --YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSA 563 (1082)
Q Consensus 503 --~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~ 563 (1082)
+.+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 2222 3566778888876542 2467777655 4788997765542 235667888899999988
Q ss_pred CCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-----------------eEEEEe-cCCCCCCcCeEE
Q 001415 564 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIR 625 (1082)
Q Consensus 564 d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~i~~~~ 625 (1082)
.-.+-+ ..+++++.|| |+||.+.... .+..+. ..+|...|..+.
T Consensus 234 n~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 234 NIGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred ccCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence 754222 2588899999 9999987311 112222 233445899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEec
Q 001415 626 FNKDGCLLAVSTNDNGIKILATS 648 (1082)
Q Consensus 626 ~s~dg~~l~~~~~dg~i~iwd~~ 648 (1082)
|+-.|..|++.+.||.|++|...
T Consensus 296 wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 296 WNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeeeEEeecCCCceeeehhhh
Confidence 99999999999999999999754
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.4e-19 Score=183.50 Aligned_cols=255 Identities=13% Similarity=0.175 Sum_probs=187.2
Q ss_pred CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcc------cccccccCCCCceeEEEEecC-CCeEEEEeCCC
Q 001415 370 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP------LQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRH 442 (1082)
Q Consensus 370 g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~ 442 (1082)
|. ++|.|+.|..|.|||+.=...+. ..+ .+...... .......+|++.|.+++|+.. ...||+|+.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~-P~~---~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL-PCV---TLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc-cce---eechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 45 59999999999999986432221 001 11100000 011124589999999999984 55889999999
Q ss_pred eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee-EEeecCCcCeEEEeeeecC
Q 001415 443 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSVCPHHKE 521 (1082)
Q Consensus 443 ~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~ 521 (1082)
+|++||+.++++.. ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+..... ..++ ..+.|-.++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence 99999999999776 67789999999999998877 8999999999999999853322 2222 45778889998766
Q ss_pred CceEEEEecCCCcEEEEecCCC-CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEE
Q 001415 522 NIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1082)
Q Consensus 522 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 600 (1082)
. ..++++..||+|+-+|++.. ++..++..|...|.++++++.-. ..+++++.|+.+++
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKL 400 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEE
Confidence 5 57888899999999999987 66778888888888888776544 36888999999999
Q ss_pred EECCCcceEEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEecCCcccee
Q 001415 601 WDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
|++............-......|+++.|+- -.++.|+..+.+++||+.+.....+
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 998754432222111122245677788854 4567788888899999987744433
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-18 Score=177.79 Aligned_cols=292 Identities=12% Similarity=0.175 Sum_probs=212.8
Q ss_pred eeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc-eeeecccCCeEEEeeccccccCCCCCccccc
Q 001415 685 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASV 763 (1082)
Q Consensus 685 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 763 (1082)
+.+++....+++||.............+ ....+.++.|+.... .++..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 3445555689999998776555544433 223488888887764 334555678888885321
Q ss_pred CccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcE
Q 001415 764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 842 (1082)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 842 (1082)
.++.+...... ....-.|++......|+++|+ .+.|+|||++...+.+.+.+|...|+++.+.- ...+
T Consensus 67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 11111111110 122344555555558888887 58899999998888888999999999999998 7789
Q ss_pred EEEEeCCCcEEEEecccceeeeeeccc-ccCEEEEEEeCCCCE-EEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCC
Q 001415 843 IAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 920 (1082)
Q Consensus 843 lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 920 (1082)
||+++..|.|.|..+.++....+|... ...|.-+.|||..+. |.+++.+|.|.+||+.+... .......|.
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs--- 208 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS--- 208 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence 999999999999999998877777644 345668999998765 56789999999999998432 334444555
Q ss_pred CCCcEEEEcCCCcEEEE--EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee-
Q 001415 921 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL- 997 (1082)
Q Consensus 921 ~~v~~~~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~- 997 (1082)
.+...|+|+|....|++ +.|..|.+||....+....+.. ..+.++++|+++|.+|+.|+..|.|..||+...+.
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 56789999998776665 7999999999987777666653 56899999999999999999999999999986554
Q ss_pred eeeeCCCeecCCCCCCCCceeeEEEEeC
Q 001415 998 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1025 (1082)
Q Consensus 998 ~~~~~~~~~~~~gh~~~~v~~~~~~~~~ 1025 (1082)
+.++. .|... +.+++|-|
T Consensus 286 v~v~s-------ah~~s---Vt~vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDAS---VTRVAFQP 303 (673)
T ss_pred ceEee-------ecccc---eeEEEeee
Confidence 44433 33233 44778877
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=176.94 Aligned_cols=229 Identities=19% Similarity=0.304 Sum_probs=167.2
Q ss_pred CcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE
Q 001415 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1082)
Q Consensus 348 ~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1082)
.+.+...-+|+.+=++++|||-..--|++|..-+.|++|...+|.-... .. -+.+|+..|-.|+
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----------~~-----Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----------QR-----PFTGHTKSVEDLQ 264 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec-----------Cc-----cccccccchhhhc
Confidence 4445555569999999999993322388998889999999988764431 11 2667999999999
Q ss_pred Eec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC---CceeE
Q 001415 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQY 503 (1082)
Q Consensus 428 ~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~---~~~~~ 503 (1082)
||| ....||+|+.||+|+|||+..+...... ..+.|.+.|+-|.|+..-. +||+|+.||+++|||+++ ++++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence 999 4568999999999999999988433333 3488999999999998888 899999999999999975 77889
Q ss_pred EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc-cccceeEEEe
Q 001415 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-RKRSLGVVQF 582 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~-~~~~i~~~~~ 582 (1082)
.++-|..+|+++.|+|..+ ..|++++.|..|.+||+....-.-..... ....+.--| ..++.-| .+..+.-+.|
T Consensus 342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~--a~~~L~dlP--pQLLFVHqGQke~KevhW 416 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQE--AAEGLQDLP--PQLLFVHQGQKEVKEVHW 416 (440)
T ss_pred eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccc--cccchhcCC--ceeEEEecchhHhhhhee
Confidence 9999999999999999876 58889999999999998643221100000 000000000 0222222 3446677888
Q ss_pred cCCCC-EEEEEeCCCeEEEE
Q 001415 583 DTTKN-RFLAAGDDFSIKFW 601 (1082)
Q Consensus 583 ~~~~~-~l~~~~~dg~i~iw 601 (1082)
+++-. ++++.+.|| +.||
T Consensus 417 H~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccCCCCeEEEecccc-eeEE
Confidence 87654 666677777 4444
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.5e-19 Score=180.54 Aligned_cols=238 Identities=17% Similarity=0.253 Sum_probs=175.3
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEE------------------eeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~------------------~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~ 492 (1082)
-|+|+|.|+.|..|.|||+.--..+.+... ..+|++.|.+++|+..-+. +|||||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 478999999999999999864332222222 2379999999999988777 899999999999
Q ss_pred EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1082)
Q Consensus 493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 572 (1082)
+||+.+|++..++..|.+.|.++.|++... .+|++|+.|++|.+.|.+...... ..|+-+|
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~-----------~~wk~~g------- 330 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSG-----------KEWKFDG------- 330 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccC-----------ceEEecc-------
Confidence 999999999999999999999999998654 799999999999999998532221 1222222
Q ss_pred cccceeEEEecCCC-CEEEEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEecC
Q 001415 573 RKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 573 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~iwd~~~ 649 (1082)
.+-.++|+|.. ..++++..||+++-+|++.. +++.+++.|.. +|.++++++. -.++++++.++.+++|++..
T Consensus 331 ---~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 331 ---EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ---ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecC
Confidence 23334444433 35778889999999999865 88999988876 8999999984 46788999999999999875
Q ss_pred Cccceeecccccccccc-cccccCCCCccccCCC-CceeeeccCCceeEEEeccc
Q 001415 650 GIRLLRTFENLAYDASR-TSENSKNGDVRSLADV-KPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 650 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~ 702 (1082)
.... ....|.....+ .+.++ .|+- -.++.|+..+.+++||+...
T Consensus 406 ~~~~--~v~~~~~~~~rl~c~~~-------~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 406 DSPK--SVKEHSFKLGRLHCFAL-------DPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCCc--ccccccccccceeeccc-------CCCcceEEEecCccceEEEeecccC
Confidence 4221 11111111111 02222 3333 35677888888999998753
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.8e-19 Score=181.79 Aligned_cols=287 Identities=11% Similarity=0.105 Sum_probs=215.1
Q ss_pred cccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeece
Q 001415 320 PVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 399 (1082)
Q Consensus 320 ~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~ 399 (1082)
++++||++-...+ +.-+.++-.|. +..+.|+......+|+.+.|..|++|.-... +.+ +
T Consensus 13 ~~kl~D~s~~~~~---------------~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~--V 71 (673)
T KOG4378|consen 13 KTKLSDFSDLETK---------------SEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPE--V 71 (673)
T ss_pred ceEEeecccccCc---------------cccccCCCCCc--ceeeeccccceEEEeecCCceeEEEecccCC--CCc--c
Confidence 4778877644432 22222333344 8899998887534455566788899964322 110 1
Q ss_pred eeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCc
Q 001415 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479 (1082)
Q Consensus 400 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~ 479 (1082)
|...+ +.+ +.-.|++......|+++|+..+.|+|||++...+.+ .+.+|...|+++.+...+.
T Consensus 72 ----------p~~~k-~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De- 134 (673)
T KOG4378|consen 72 ----------PRVRK-LTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE- 134 (673)
T ss_pred ----------ceeec-ccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc-
Confidence 11110 112 233444444455899999999999999999665554 6889999999999998888
Q ss_pred eEEEEEeCCCcEEEEEccCCceeEEeecCCcC-eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceee-ecCCCCceE
Q 001415 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCT 557 (1082)
Q Consensus 480 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~ 557 (1082)
+||+++..|.|.|..+.++.....|....+. |.-+.+++... .+|.+++.+|.|.+||+....+... ...|..+..
T Consensus 135 -yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 135 -YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR 212 (673)
T ss_pred -eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence 8999999999999999999888888754344 55778877654 6888999999999999988776653 345677778
Q ss_pred EEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001415 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637 (1082)
Q Consensus 558 ~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 637 (1082)
.++|+|... ..|++.|.|..|.+||....+....+.... +...++|+++|.+|+.|.
T Consensus 213 gicfspsne--------------------~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 213 GICFSPSNE--------------------ALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGN 269 (673)
T ss_pred cceecCCcc--------------------ceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeec
Confidence 888887765 258889999999999999887777765433 588999999999999999
Q ss_pred CCCcEEEEEecCCccceeeccccccccccccccc
Q 001415 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1082)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
..|.|..||++..+.++..+..|...+. +++|
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt--~vaf 301 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVT--RVAF 301 (673)
T ss_pred CCceEEEEecccCCCCceEeeeccccee--EEEe
Confidence 9999999999999889999988888766 5666
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=2.8e-18 Score=172.08 Aligned_cols=339 Identities=16% Similarity=0.211 Sum_probs=206.2
Q ss_pred CCceeEEEEecCCC-eEEEEeCCCeEEEEEccCCc------eeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415 420 GVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 420 ~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~------~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~ 492 (1082)
..+|..+.|.+++. .||+|+.|..|+||-+..+. .+.....+..|...|+++.|+|+|. +|+||+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 34899999999777 99999999999999886432 3445567889999999999999999 899999999999
Q ss_pred EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1082)
Q Consensus 493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 572 (1082)
+|-...-. + +... +.... ... .+ .+| .....|...+.
T Consensus 91 lWk~~~~~-~-----~~~d-~e~~~--~ke-~w----------~v~--------k~lr~h~~diy--------------- 127 (434)
T KOG1009|consen 91 LWKQGDVR-I-----FDAD-TEADL--NKE-KW----------VVK--------KVLRGHRDDIY--------------- 127 (434)
T ss_pred EEEecCcC-C-----cccc-chhhh--Ccc-ce----------EEE--------EEecccccchh---------------
Confidence 99754300 0 0000 00000 000 01 111 11122333444
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
.++|+|++.++++++.|+.+++||+..|+....+..|.+ .+..++|.|-++++++-+.|...+.+.+... +
T Consensus 128 ------dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~--yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~-~ 198 (434)
T KOG1009|consen 128 ------DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH--YVQGVAWDPLNQYVASKSSDRHPEGFSAKLK-Q 198 (434)
T ss_pred ------hhhccCCCceeeeeeccceEEEEEeccceeEeecccccc--ccceeecchhhhhhhhhccCcccceeeeeee-e
Confidence 444555555899999999999999999999999988877 6899999999999999999987777765433 1
Q ss_pred ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415 653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 732 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 732 (1082)
..... ...+.. ...+ . .......+++.-++ -..-...++|+|+|.
T Consensus 199 ~~~~~---~~~~m~-~~~~-------~--------~~e~~s~rLfhDeT----------------lksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 199 VIKRH---GLDIMP-AKAF-------N--------EREGKSTRLFHDET----------------LKSFFRRLSFTPDGS 243 (434)
T ss_pred eeeee---eeeEee-eccc-------C--------CCCcceeeeeecCc----------------hhhhhhhcccCCCCc
Confidence 11111 100000 0000 0 00001111221111 111233455566665
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEE
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF 812 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iw 812 (1082)
.+++.+.- +.+ +...... ..+++
T Consensus 244 llvtPag~--~~~---------------------------------------g~~~~~n----------------~tYvf 266 (434)
T KOG1009|consen 244 LLVTPAGL--FKV---------------------------------------GGGVFRN----------------TSYVF 266 (434)
T ss_pred EEEcccce--eee---------------------------------------CCceeec----------------eeEee
Confidence 44443221 100 0000000 11222
Q ss_pred ecC-CCeeEEEECCCCCCeeEEEEecC-----------------CCcEEEEEeCCCcEEEEecccceeeeeec-ccccCE
Q 001415 813 NMM-TFKTMATFMPPPPAATFLAFHPQ-----------------DNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRI 873 (1082)
Q Consensus 813 d~~-~~~~~~~~~~~~~~v~~l~~sp~-----------------~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V 873 (1082)
+-. ..++...+......+..+.|+|- -+..+|+++.+ .|+|||.++-.++.... -|-.+|
T Consensus 267 srk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~i 345 (434)
T KOG1009|consen 267 SRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAI 345 (434)
T ss_pred ccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeee
Confidence 221 11233333333333344443331 34456667655 89999998877766554 588999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccc
Q 001415 874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 905 (1082)
Q Consensus 874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~ 905 (1082)
+.++|++||..|+..|.||..-+-.++.++..
T Consensus 346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 99999999999999999999988888886643
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=175.88 Aligned_cols=312 Identities=12% Similarity=0.127 Sum_probs=226.5
Q ss_pred CCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC----ceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1082)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 573 (1082)
+-......+-+.++|++++|+|..+..++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|...
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~------- 247 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT------- 247 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-------
Confidence 33344455668899999999999988899999999999999996332 3446677777788887777654
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc
Q 001415 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1082)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~ 653 (1082)
..+++.+.||+|++-|++.+..-..+........+.++.|+.+...++.+..-|.+.+||.+++...
T Consensus 248 -------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 248 -------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred -------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 3689999999999999987765444443333345778889998888888888889999999988776
Q ss_pred eeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCce
Q 001415 654 LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 733 (1082)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 733 (1082)
...+.-|...+. .++++ .....++++++.|++.+|||+......... .+.... |...|.+..|||.+..
T Consensus 315 ~~~~~lh~kKI~--sv~~N------P~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~--HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 315 YENLRLHKKKIT--SVALN------PVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLP--HRRSVNSAYFSPSGGT 383 (498)
T ss_pred chhhhhhhcccc--eeecC------CCCchheeecccCcceeeeehhhhcCCCCc-ceeccc--ccceeeeeEEcCCCCc
Confidence 777776766554 55552 224567899999999999999876554431 222222 8899999999999988
Q ss_pred eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCC--ccEEEeecCCCeEEEee-CCeEE
Q 001415 734 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA--VPCFALSKNDSYVMSAS-GGKIS 810 (1082)
Q Consensus 734 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~dg~~l~~~s-dg~i~ 810 (1082)
|++.+.|..|+|||..- +.-|+...+....... +..+ ....+|.|+..++++|. -..|-
T Consensus 384 l~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~----t~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNR----TGRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred eEeeccCCceEEeeccc--------------ccccCCccceeeccCc----ccccccchhheeCCCccEEEEeccCccee
Confidence 99999999999998631 1112333322221111 1122 34568999999999997 47799
Q ss_pred EEecCCCeeEEEECCCCC-CeeE-EEEecCCCcEEEEEeCCCcEEEEecc
Q 001415 811 LFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYNVR 858 (1082)
Q Consensus 811 iwd~~~~~~~~~~~~~~~-~v~~-l~~sp~~~~~lasg~~dg~v~iwd~~ 858 (1082)
|+|-..++.+..+..... .|.+ ..|+|-+..++|-|+..|.|+||--+
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 999999988888665543 4554 58999433366666778899988643
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.9e-16 Score=181.23 Aligned_cols=369 Identities=22% Similarity=0.389 Sum_probs=268.5
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-eeEEeecCCc-CeEEEeeeecCCce-EEEEecC-CCcE
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKI 535 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i 535 (1082)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567899999999999999 78888899999999998887 7777776443 77777774 45545 5555444 9999
Q ss_pred EEEecCC-CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC-CCeEEEEECCCcceEEEEe
Q 001415 536 KAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSID 613 (1082)
Q Consensus 536 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 613 (1082)
.+|+... ......+..+...+..+.|++++. .+++++. |+.+++|+...+..+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeec
Confidence 9999987 556666666777676666666664 6777775 9999999999988888887
Q ss_pred cCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEecCCcccee-ecccccccccccccccCCCCccccCCCCceeeeccC
Q 001415 614 ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKNGDVRSLADVKPRITEESN 691 (1082)
Q Consensus 614 ~~~~~~~i~~~~~s~dg~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 691 (1082)
.+.. .+.+++|+|++. .+++++.|+.+++||...+. ... .+.+
T Consensus 196 ~~~~--~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~-------------------------------- 240 (466)
T COG2319 196 GHTD--PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSG-------------------------------- 240 (466)
T ss_pred cCCC--ceEEEEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCC--------------------------------
Confidence 6444 799999999998 55555889999999654321 100 0000
Q ss_pred CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCC
Q 001415 692 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 771 (1082)
Q Consensus 692 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1082)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCee-EEEECCCCCCeeEEEEecCCCcEEEEEeCC
Q 001415 772 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDD 849 (1082)
Q Consensus 772 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~d 849 (1082)
|.... ...|++++.++++++ ++.+++|+...... ...+..|...+.++.|+| ++..+++++.|
T Consensus 241 -------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d 305 (466)
T COG2319 241 -------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSD 305 (466)
T ss_pred -------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCC
Confidence 11221 114556665555444 56777777765443 344456778899999999 77777779999
Q ss_pred CcEEEEecccceeeeeec--ccccCEEEEEEeCCCCEEEEE-eCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEE
Q 001415 850 SSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 926 (1082)
Q Consensus 850 g~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 926 (1082)
+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++.... ........ ..+..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~----~~~~~~ 376 (466)
T COG2319 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-----PLKTLEGH----SNVLSV 376 (466)
T ss_pred CcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-----eeEEecCC----ceEEEE
Confidence 999999998887766665 888889999994333556555 688999999998854 11111111 115788
Q ss_pred EEcCCCcEEEE--EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415 927 QFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 927 ~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~ 994 (1082)
.+++ ...... ..++.+.+|+............. ...+....+++++..+++++.++.+++|+..+
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8888 533333 46789999999988887766531 17899999999999999999999999999988
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.9e-18 Score=165.42 Aligned_cols=306 Identities=15% Similarity=0.224 Sum_probs=210.2
Q ss_pred cccCCCCceeEEEEec-----CCCeEEEEeCCCeEEEEEccCCceeeEEEEe--eccccCeeEEEecCCCC--ceEEEEE
Q 001415 415 LVKDPGVSVNRVIWSP-----DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNK--QLCVITC 485 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~sp-----dg~~las~~~d~~v~iwd~~~~~~~~~~~~~--~~h~~~V~~l~fs~dg~--~~~l~s~ 485 (1082)
+..+|+.+|..++|.+ .-..+|+++. ..+.+|.......++.+... ..|......++|+-|.. ..++|.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 5678999999999986 3345565554 56889988765433322222 24777888999976543 2488999
Q ss_pred eCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec---CCCCceEEEEEc
Q 001415 486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYS 562 (1082)
Q Consensus 486 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s 562 (1082)
|.-|.|+|.|+.++++...+.+|...|+.+.++|... +++++++.|..||+|++++..++..+. +|...|.++.
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD-- 188 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD-- 188 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE--
Confidence 9999999999999999999999999999999998755 799999999999999999887776543 3444455554
Q ss_pred cCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEe------cC--------------------C
Q 001415 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID------AD--------------------G 616 (1082)
Q Consensus 563 ~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~--------------------~ 616 (1082)
|++++.+++++|.|.+|++|++...+....++ .. .
T Consensus 189 -------------------~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 189 -------------------FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred -------------------EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 45555589999999999999998543221111 00 1
Q ss_pred CCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccc-ccccccCC-----CCccccCCCCceeeecc
Q 001415 617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS-RTSENSKN-----GDVRSLADVKPRITEES 690 (1082)
Q Consensus 617 ~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~s~~~~~l~~~~~ 690 (1082)
|...|-|+.|- |+++++-+-++.|..|....-.+.+........... -....+.. ....+.+-++.|+.|..
T Consensus 250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 11123333333 578888888999999987321122111111110000 00001100 11223566788999999
Q ss_pred CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415 691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748 (1082)
Q Consensus 691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 748 (1082)
.|.+.+||+...... .+..+.-. .....|+..+|+.||..|+..+.|+.|.-||.
T Consensus 328 ~g~v~vwdL~~~ep~-~~ttl~~s--~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPP-KCTTLTHS--KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCc-cCceEEec--cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999976554 33333222 25678999999999999999999999999875
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=2.9e-17 Score=169.74 Aligned_cols=506 Identities=14% Similarity=0.133 Sum_probs=284.7
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
.|...|.|+.|+.... ++.++ .|..+.+|.-.+....... .+.....| ..-|-.+-. ..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~-----~~p~df~p-----t~~h~~~rs-~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVA-----KLPDDFVP-----TDMHLGGRS-SGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhh-----hCCcccCC-----ccccccccc-cCCCCCcceE
Confidence 5777788999999988 35554 4556555544333222110 00000000 001100000 0000123578
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 515 (1082)
+.++.||.+.|-+-.. +..+ ....|.+.|.+-.|+|||. -|++++.||.|++|. ++|....++.....+|.|+
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 8888999988877443 2222 5779999999999999999 799999999999999 7887777777678899999
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
+|.|+.+ +.+++.+ +.+.+=.+...........|.+-|.++. |++..+.+++||+|
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~---------------------W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLS---------------------WSTQSNIIASGGED 207 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEee---------------------cCccccceeecCCc
Confidence 9988775 4555443 3455555555555556666665555555 45555589999999
Q ss_pred CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCC
Q 001415 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGD 675 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1082)
-..++||.. |..+..-..|.. +|++++|+|+ +.++.++. +++++=.
T Consensus 208 ~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~~----------------------------- 253 (737)
T KOG1524|consen 208 FRFKIWDAQ-GANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFSS----------------------------- 253 (737)
T ss_pred eeEEeeccc-CcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeecC-----------------------------
Confidence 999999964 555555555554 8999999999 55555543 2222100
Q ss_pred ccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCC
Q 001415 676 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 755 (1082)
Q Consensus 676 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 755 (1082)
...+.|..++||+||.++++++..|.+.+=..-.
T Consensus 254 -----------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----- 287 (737)
T KOG1524|consen 254 -----------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE----- 287 (737)
T ss_pred -----------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeeh-----
Confidence 0356788899999999999999988776421100
Q ss_pred CCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEECCCCCCeeEEE
Q 001415 756 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLA 834 (1082)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 834 (1082)
...+ -+.+=++. ....|.+-|+.++.+ ..+. ....+...+
T Consensus 288 ------------------------------q~l~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~s 328 (737)
T KOG1524|consen 288 ------------------------------QQLV-------SGNLKATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFS 328 (737)
T ss_pred ------------------------------hhhh-------hccceeEeeccceEEeehhhhhHH-HHhh-Cccceeeee
Confidence 0000 00111112 134466666655433 2222 344555555
Q ss_pred EecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccC
Q 001415 835 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 914 (1082)
Q Consensus 835 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 914 (1082)
+.- + +|+++. ...|++|.-........+.+....+.-+.- ++...-.....+|.+|..+...... ..+.
T Consensus 329 L~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq---~ek~fli~dgsSi~lytyegR~~~n----p~~P 397 (737)
T KOG1524|consen 329 LGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQ---GEKYFLILDGSSIWLYTYEGRLHLN----PRYP 397 (737)
T ss_pred ece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhh---hhhheEEecCcEEEEEEecCceecC----CCCC
Confidence 543 3 333333 246888776554433344443333221211 1111112223346666555422111 1111
Q ss_pred CCCCCCCCCcEEEEcCCCcEEEE---EecCeEEEEEc-cCcceeeeeccCCCCcceeEEEEc----CCCceEEEeecCCc
Q 001415 915 GRTPTAQSDTRVQFHQDQIHFLV---VHETQLAIFET-TKLECVKQWVPRESSAPITHATFS----CDSQLVYACFLDAT 986 (1082)
Q Consensus 915 ~~~~~~~~v~~~~fspdg~~l~~---~~d~~i~iwd~-~~~~~~~~~~~~~h~~~i~~l~~s----~dg~~l~t~s~dg~ 986 (1082)
|... .....-..|-....|+. +....+.+||. .+|+....-..-.|...|..++.. ++.+.++.-...+.
T Consensus 398 g~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrd 475 (737)
T KOG1524|consen 398 GSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRD 475 (737)
T ss_pred Cccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCc
Confidence 1110 11111122333334555 23356788888 666654332222355566666654 35567777777777
Q ss_pred EEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 987 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 987 v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+.|=.+.......++- .-| .....++|+. -.-+++|-.|+++.||-.+...
T Consensus 476 l~ItsvKrfgkee~I~-----KiG-----TmVhtLawnd--ttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 476 LFITSVKRFGKEEEIY-----KIG-----TMVHTLAWND--TTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred EEEEeehhcCchhhhh-----hhh-----hhhhhhhhcc--ccceeeeeccceEEEEEcCCcc
Confidence 7776554322211111 112 2233688884 4568889999999999887644
No 168
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=4.8e-18 Score=165.13 Aligned_cols=406 Identities=15% Similarity=0.153 Sum_probs=238.2
Q ss_pred EEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-eCC
Q 001415 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 441 (1082)
Q Consensus 363 ~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 441 (1082)
-+.|||+|+| +|+.+.- .+.|-|.++-+.++. -.--+.|..+.|+.|.-+++.+ ..+
T Consensus 13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeeee-EEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 4679999996 8877644 888888887665541 1123478889999999887765 678
Q ss_pred CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecC
Q 001415 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1082)
Q Consensus 442 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1082)
+.|.+|++...+-.. .+....+++.++.|||||+. +|.+...|-.|.||.+.+.+....- -....+..++|+++
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~d- 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPD- 144 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCC-
Confidence 899999998876554 56677889999999999987 7888889999999999887765432 23344577787654
Q ss_pred CceEEEEecCCCc---EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeE
Q 001415 522 NIQFIFSTALDGK---IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1082)
Q Consensus 522 ~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 598 (1082)
|++.+.++.-.. +.+.....-.....+....-..+.+.|+||| +.++
T Consensus 145 -g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~la-------- 194 (447)
T KOG4497|consen 145 -GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLA-------- 194 (447)
T ss_pred -CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEE--------
Confidence 467666654211 1111000000111222223333444555554 4544
Q ss_pred EEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccc
Q 001415 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRS 678 (1082)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1082)
+||.--.-.+..+... -.+..++|+|.+++|++|+.|+.+++.+--+-+ ....+. |.
T Consensus 195 -Vwd~~Leykv~aYe~~---lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk-~f~efl-hl----------------- 251 (447)
T KOG4497|consen 195 -VWDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK-PFGEFL-HL----------------- 251 (447)
T ss_pred -Eecchhhheeeeeeec---cceeEEEeccccceEEeeccchhhhhhceeeee-ehhhhc-cc-----------------
Confidence 5553222122222211 147889999999999999999999987644331 111110 00
Q ss_pred cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCC
Q 001415 679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 758 (1082)
Q Consensus 679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 758 (1082)
.+-.|-+..+-..+. ... -.-...++.|.|..- ...+|......... .
T Consensus 252 --------~s~~dp~~~~~~ke~----~~~---------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~--~ 299 (447)
T KOG4497|consen 252 --------CSYHDPTLHLLEKET----FSI---------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQ--Q 299 (447)
T ss_pred --------hhccCchhhhhhhhh----cch---------hhhcccccccCCCcc---------ccCccccchhhhhh--h
Confidence 000001100000000 000 000112333443321 00111110000000 0
Q ss_pred cccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC---CeEEEEecCCCeeEEEECCCCCCeeEEEE
Q 001415 759 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAF 835 (1082)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 835 (1082)
. ....+....+.+. . .+..-.+.-++||+|..++++-.| +.+.+||+...+....+. ....|....|
T Consensus 300 ~-~pv~~~~lkp~tD------~--pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~W 369 (447)
T KOG4497|consen 300 M-TPVKVHKLKPPTD------F--PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEW 369 (447)
T ss_pred h-cceeeecccCCCC------C--CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEe
Confidence 0 0000000000010 0 113456778999999999999986 569999999876655554 5668999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc
Q 001415 836 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 893 (1082)
Q Consensus 836 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 893 (1082)
.| +...|+.......+++|......++.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus 370 dP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 370 DP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 99 666666666677899998775444433 333467999999999999999998874
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-19 Score=202.77 Aligned_cols=280 Identities=13% Similarity=0.190 Sum_probs=211.3
Q ss_pred cccccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCe---EEEEEcCCCcEEEEEcccccee
Q 001415 318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERL 394 (1082)
Q Consensus 318 ~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~---llasgs~dg~i~iwd~~~~~~~ 394 (1082)
++++.+|.++|..... .-+....+.-....+.++|++.|.. ++|.|..||.|.+||...- +
T Consensus 38 ~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~ 101 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--I 101 (1049)
T ss_pred ccccceeeecccCccc--------------cccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--c
Confidence 4556677666655321 1123344556778899999998886 6999999999999998652 0
Q ss_pred eeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC-eEEEEeCCCeEEEEEccCCceeeEEEEee--ccccCeeEE
Q 001415 395 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDI 471 (1082)
Q Consensus 395 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~~~~~~~~~~--~h~~~V~~l 471 (1082)
. ....+. -.....|++.|..+.|++.+. +||+|+.||.|.|||+..-+... ... .-.+.|.++
T Consensus 102 ~----------~~~~~~-la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 102 A----------NASEEV-LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCL 167 (1049)
T ss_pred c----------CcchHH-HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEe
Confidence 0 000111 113678999999999999665 99999999999999998754332 221 245689999
Q ss_pred EecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc--CeEEEeeeecCCceEEEEecCCC--cEEEEecCCCC-ce
Q 001415 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SR 546 (1082)
Q Consensus 472 ~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~-~~ 546 (1082)
+|+..-+. +|++++.+|.+.|||++..+.+-.+..|.+ .+..+.|+|+...+++++...|+ .|.+||++... ..
T Consensus 168 sWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 168 SWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred ccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 99988776 899999999999999999988877776654 47789999987754444444443 59999988644 34
Q ss_pred eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEE
Q 001415 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1082)
Q Consensus 547 ~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 626 (1082)
..++.|...|.++.|++.+. .++++++.|+.|.+|+.++++.+..+...+. ++..+.|
T Consensus 247 k~~~~H~~GilslsWc~~D~--------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w 304 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDP--------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQW 304 (1049)
T ss_pred hhhcccccceeeeccCCCCc--------------------hhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeee
Confidence 45567777777777776653 3788999999999999999999999986544 7899999
Q ss_pred cCCC-CEEEEEECCCcEEEEEecCC
Q 001415 627 NKDG-CLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 627 s~dg-~~l~~~~~dg~i~iwd~~~~ 650 (1082)
+|.. ..+++++-||.|.|+.+.+.
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecC
Confidence 9955 48888999999999998765
No 170
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.4e-18 Score=176.23 Aligned_cols=223 Identities=17% Similarity=0.188 Sum_probs=154.8
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEEeeeecCCceEEEEecCCCcEEEE
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1082)
++.||++.|+|++|+.+|. +|++||+|-.+.|||.-..+.++.+ +||...|.++.|.|..+...+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 8999999999999999988888776 589999999999999888999999999999999
Q ss_pred ecCCCCce----------eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC-CEEEEEeCCCeEEEEECCCcc
Q 001415 539 LYDNLGSR----------VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQ 607 (1082)
Q Consensus 539 d~~~~~~~----------~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 607 (1082)
|+...+.. ..+..|...|.. ++..|++ ..+.++++||+|+-+|++...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKr---------------------ia~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKR---------------------IATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhh---------------------eecCCCCCceEEEecCCcceeeecccCCc
Confidence 99853321 122223333333 4444444 578899999999999998632
Q ss_pred eE-------E-EEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccce-----------------eec-ccc
Q 001415 608 LL-------T-SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLL-----------------RTF-ENL 660 (1082)
Q Consensus 608 ~~-------~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~-~~~ 660 (1082)
.- . ............++.++| +..+|++|+.|...++||.+...+.. ..+ .+|
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 11 0 011111223467899999 56789999999999999953211111 000 011
Q ss_pred ccccccc--ccccCCCCccccCCCCceeeeccCCceeEEEecccCCC
Q 001415 661 AYDASRT--SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 705 (1082)
Q Consensus 661 ~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 705 (1082)
....... ........+.++|+|..+++.-....|+++|+...+.+
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 1000000 00000112346889988888888789999999875443
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=3.4e-17 Score=159.09 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=169.3
Q ss_pred cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCe
Q 001415 729 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 808 (1082)
Q Consensus 729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~ 808 (1082)
|+..++++.+.+.-|.+||.-+++...+-+ .+|. ...-....+++|+|||..|.+|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------~ydh------------~de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------AYDH------------QDEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh--------hhhh------------HHhhhhheeEEecCCCCeEeecccce
Confidence 566778888888888888765433221111 1110 01223456899999999999999999
Q ss_pred EEEEec-CCCeeEEE---E----CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415 809 ISLFNM-MTFKTMAT---F----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 880 (1082)
Q Consensus 809 i~iwd~-~~~~~~~~---~----~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 880 (1082)
|++||+ +.|+.... + .+..+-+.+++|+|.+...+|+|+....+-||.-..+.++..+-+|.+.|+.+.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 999999 44432221 1 123566899999998888999999999999999888999999999999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccC-cceeeee
Q 001415 881 ALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECVKQW 957 (1082)
Q Consensus 881 d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~-~~~~~~~ 957 (1082)
||+.|.+|.. |-.|..||++.... .+-....|......-......|+|++|+++ .+|.|++||+++ |..+..+
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 9999999875 67799999987432 222222232201112334557889999995 899999999988 6656555
Q ss_pred ccCCCCcceeEEEEcCCCceEEEeecC
Q 001415 958 VPRESSAPITHATFSCDSQLVYACFLD 984 (1082)
Q Consensus 958 ~~~~h~~~i~~l~~s~dg~~l~t~s~d 984 (1082)
. .|...++.+++.|--.++|+++..
T Consensus 337 ~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 337 G--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred c--cccccccceecCcccceeeeccCc
Confidence 4 678899999999998888887643
No 172
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-15 Score=165.29 Aligned_cols=490 Identities=13% Similarity=0.154 Sum_probs=282.9
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-----
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 431 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 431 (1082)
|.+.-.++.|+|.| |+|-|+ ...|.+-|..+-+.+.. +..|...|+.+.|+|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 44557889999999 788886 45788889888777764 6778899999999882
Q ss_pred -C------CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecC---CCCceEEEEEeCCCcEEEEEccCCce
Q 001415 432 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 501 (1082)
Q Consensus 432 -g------~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~---dg~~~~l~s~s~d~~i~vwd~~~~~~ 501 (1082)
+ -.||++...|.|.+||...+..+. .+..|.++|..+.|-+ +.+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2 267888888999999999887665 6888999999999965 3323 566666678999999999999
Q ss_pred eEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCC-------eeeec---
Q 001415 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--- 571 (1082)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-------~~~~~--- 571 (1082)
+...........++.+.|-.. ..+..-+..|.+.+-+.-...+ +..+...+.+..+-. ....+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~se------p~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSE------PDVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCC------CCCCceeEEEecCccchhhhhhhhhccccc
Confidence 988776666777777776554 3445455566666554432111 011111111111100 00000
Q ss_pred -cccc------ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC--CEEEEEECCCcE
Q 001415 572 -FRKR------SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 642 (1082)
Q Consensus 572 -~~~~------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~dg~i 642 (1082)
.... ....++|+|.-+.++-......+.++|++-..++.......+ .+.-+.+-|++ ..|++...||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 0000 011245677666566666677899999999888888876655 34456666654 579999999999
Q ss_pred EEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccce
Q 001415 643 KILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 722 (1082)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 722 (1082)
.+|-........+.... .+.. +....+.+-... .+..+
T Consensus 299 tirvrk~~~~~f~~~~~--------~l~~-----------------dl~~Q~~~vr~m-----------------~~~rp 336 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNA--------SLSM-----------------DLGEQVHVVRPM-----------------EEFRP 336 (1062)
T ss_pred EEEEeeccCccccccch--------hhcc-----------------ccccceEEEeec-----------------hhccc
Confidence 99976543111111000 0000 000011111110 11122
Q ss_pred eEEEEccC-CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeE
Q 001415 723 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 801 (1082)
Q Consensus 723 ~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 801 (1082)
......|. ...++..-.+|...+|.+..+....++......-..-+|....... -..-.-+.+|.||
T Consensus 337 ~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------v~k~~l~~LS~dg--- 404 (1062)
T KOG1912|consen 337 VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------VGKTSLISLSDDG--- 404 (1062)
T ss_pred ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee---------hhhccccchhhcC---
Confidence 22223333 3344455556667777666433322221100000000000000000 0000001112222
Q ss_pred EEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCC-------cEEEEEeCCCcEEEEecccceeeeeecccccCEE
Q 001415 802 MSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN-------NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 874 (1082)
Q Consensus 802 ~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 874 (1082)
...+|........ ....+-+.-.| ++ .++|.|+..|+|.++|+.++...+.+..|++.|.
T Consensus 405 -----------~h~sGs~~~~~~p-~p~~t~~~~~p-~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vk 471 (1062)
T KOG1912|consen 405 -----------SHSSGSTCVRMRP-MPELTKVENDP-GGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVK 471 (1062)
T ss_pred -----------CCCCCceeeeccc-CcccceeecCC-CCCccceeeeeEEeecCCceEEEEEecchhhhhhhccccccee
Confidence 0011111111110 00011111111 11 2889999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEE---------EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEE
Q 001415 875 GLAFSHALNVLVS---------SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 944 (1082)
Q Consensus 875 ~l~~s~d~~~l~s---------~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~ 944 (1082)
++.|-....++-. ++--+.+.+-|+.+|-....+-++.++ ..+|..+..|..|+||+.. .+.-+.
T Consensus 472 gleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d-----espI~~irvS~~~~yLai~Fr~~plE 546 (1062)
T KOG1912|consen 472 GLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD-----ESPIRAIRVSSSGRYLAILFRREPLE 546 (1062)
T ss_pred eeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCC-----cCcceeeeecccCceEEEEecccchH
Confidence 9999755543322 222245788899997643333222222 2679999999999999995 677899
Q ss_pred EEEccCcce
Q 001415 945 IFETTKLEC 953 (1082)
Q Consensus 945 iwd~~~~~~ 953 (1082)
+||+++..+
T Consensus 547 iwd~kt~~~ 555 (1062)
T KOG1912|consen 547 IWDLKTLRM 555 (1062)
T ss_pred HHhhccchH
Confidence 999876554
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.7e-17 Score=164.10 Aligned_cols=217 Identities=15% Similarity=0.283 Sum_probs=167.0
Q ss_pred cccCCCCceeEEEEec-CCCeEEEEeCCCeEEEEEccCCce----eeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~ 489 (1082)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+.. ......+.||...|..++|.|.-.. +|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5889999999999999 788999999999999999875533 2345578999999999999999887 799999999
Q ss_pred cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCC-ceEEEEEccCCCee
Q 001415 490 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTRT 568 (1082)
Q Consensus 490 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~~ 568 (1082)
+|.+||+.+|+.+-++. |.+.|++++|+. +|.++++.+.|+.||+||.++++....-..|.+ .-..+.|-.+|.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-- 229 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-- 229 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc--
Confidence 99999999999999988 999999999865 557999999999999999998777665544433 333344444443
Q ss_pred eecccccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcce---EEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCC
Q 001415 569 YQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDN 640 (1082)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~-~~dg 640 (1082)
+++.+ .+..+-+||...-+. ...+... ..|.---|.+|..+++.+ -.|+
T Consensus 230 --------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 230 --------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred --------------------eeeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecCCc
Confidence 33333 578899998765432 3333322 235555678888877654 5799
Q ss_pred cEEEEEecCCccceeecccc
Q 001415 641 GIKILATSDGIRLLRTFENL 660 (1082)
Q Consensus 641 ~i~iwd~~~~~~~~~~~~~~ 660 (1082)
.|+.|.+.+....+..+...
T Consensus 287 ~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 287 SIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred ceEEEEecCCCceeEEeccc
Confidence 99999998875555555443
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=155.90 Aligned_cols=308 Identities=14% Similarity=0.204 Sum_probs=193.5
Q ss_pred ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec-CCCCceEEEEEccCCCeeeeccccccee
Q 001415 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1082)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~~~~~~~~~~i~ 578 (1082)
.+...+++|.+.|+++.|..+ .+|++|..-|.|++|++.+......+. .+...++.+..-|++
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d------------- 68 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND------------- 68 (323)
T ss_pred CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-------------
Confidence 345677789999999998544 369999999999999999988877777 455566666666654
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC-cEEEEEecCCccceeec
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 657 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 657 (1082)
.+.+-+.|+.+.+|++..+..+..-.. .++++-|.+.. +...+... ..-.++-+.... .+..
T Consensus 69 ---------~l~tqgRd~~L~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 69 ---------SLDTQGRDPLLILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ---------chhhcCCCceEEEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 488889999999999987655443221 23333333311 01100000 111111110000 0000
Q ss_pred ccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc-CCc--ee
Q 001415 658 ENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGN--AI 734 (1082)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~--~l 734 (1082)
-++..-.+.+-+-. .....+.+.+..+.. ++. .+
T Consensus 132 -----------------------------D~g~~tqv~i~dd~--------------~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 132 -----------------------------DGGDTTQVQIADDS--------------ERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred -----------------------------ccCccceeEccCch--------------hccccCceeeeeccccccceEEE
Confidence 00000011111111 011233344333222 222 35
Q ss_pred eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe
Q 001415 735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN 813 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd 813 (1082)
+++.++|.+.+||+...+... +.......... ...|..+|.++.|.+.-..=++|+ +..+..|+
T Consensus 169 laGyEsghvv~wd~S~~~~~~-------------~~~~~~kv~~~--~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKII-------------QLPQSSKVESP--NASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred EEeccCCeEEEEEccCCceee-------------ccccccccccc--hhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 677778999999987642111 11111111111 123889999999976544444444 56788888
Q ss_pred cCCC--ee--EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415 814 MMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 814 ~~~~--~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 889 (1082)
+... .+ ...+......|..+.+-| |++.+|+++.|+.||||+.++...++.++-|++.|++++|+||...+|.++
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred eccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 7632 22 222233345688899999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEc
Q 001415 890 ADSQLCVWSS 899 (1082)
Q Consensus 890 ~Dg~i~vwd~ 899 (1082)
.|++|-+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=5.4e-17 Score=157.72 Aligned_cols=280 Identities=15% Similarity=0.264 Sum_probs=188.2
Q ss_pred eeEEEecCCCCceEEEEEeCCCcEEEEEccCC-------ce-----eEEee-cCCcCeEEEeeee-----cCCceEEEEe
Q 001415 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPHH-----KENIQFIFST 529 (1082)
Q Consensus 468 V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-------~~-----~~~~~-~h~~~v~~~~~~~-----~~~~~~l~s~ 529 (1082)
...+.|||||. .|++-+.|..+++|++-.. .. ..+++ .....|...+|.+ .++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 44689999999 8999999999999987521 11 11111 1234567777652 3455789999
Q ss_pred cCCCcEEEEecCCCCceeeecCCCC-----ceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEEC-
Q 001415 530 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 603 (1082)
Q Consensus 530 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~- 603 (1082)
+.+.-|++||.-+++....+..-.. ...+++|+|||. +|++| ....|+++|+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------qlfaG-ykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------QLFAG-YKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---------------------eEeec-ccceEEEeecc
Confidence 9999999999998887765554322 233455555554 66654 4678999998
Q ss_pred CCcceEEEEe--c---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCcc
Q 001415 604 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVR 677 (1082)
Q Consensus 604 ~~~~~~~~~~--~---~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1082)
+.|..-..+. . .+...-+.+++|+| +.+.+++|+....+-||.-... .+...+
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~ll-------------------- 246 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLL-------------------- 246 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceeee--------------------
Confidence 5554322211 1 12233567888998 5568888887766666543322 000000
Q ss_pred ccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCC
Q 001415 678 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 757 (1082)
Q Consensus 678 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 757 (1082)
T Consensus 247 -------------------------------------------------------------------------------- 246 (406)
T KOG2919|consen 247 -------------------------------------------------------------------------------- 246 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCC-CeeEEEECCCCC-CeeE-
Q 001415 758 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMATFMPPPP-AATF- 832 (1082)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~~~~~~~-~v~~- 832 (1082)
.+|.+.|+.++|.+||..|.+|. +..|..||++. ..++..+..|.. .=..
T Consensus 247 -------------------------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI 301 (406)
T KOG2919|consen 247 -------------------------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI 301 (406)
T ss_pred -------------------------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE
Confidence 02667777777777777777776 56788888874 344555555544 2223
Q ss_pred -EEEecCCCcEEEEEeCCCcEEEEeccc-ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415 833 -LAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 833 -l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
....| ++++||+|+.||.|++||+++ |..+..+..|+..|+.++++|--.++|+++.. +++...+
T Consensus 302 ~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 302 LFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK 368 (406)
T ss_pred EEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---eeecCCC
Confidence 44567 899999999999999999998 77788888899999999999999999988754 4454433
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=4.8e-17 Score=162.31 Aligned_cols=245 Identities=14% Similarity=0.200 Sum_probs=175.3
Q ss_pred CCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeE
Q 001415 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1082)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1082)
.++...-..-+|+++|..++|+|-....+|+||.|.+|.||++..+.+.... ......|.+|...|--
T Consensus 69 r~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~ 136 (472)
T KOG0303|consen 69 RMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGL 136 (472)
T ss_pred ccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEE
Confidence 3444444566899999999999998889999999999999999776554321 1122358999999999
Q ss_pred EEEec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001415 426 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1082)
Q Consensus 426 l~~sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~ 504 (1082)
++|.| -.+.|++++.|.+|.|||+.+|+.+. ++. |.+.|+++.|+.||. ++++.+.|+.|||||.++++.+..
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred EeecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeee
Confidence 99999 56789999999999999999999765 555 999999999999999 899999999999999999999998
Q ss_pred eecCCcCeEE-EeeeecCCceEEEEec---CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415 505 FEGHEAPVYS-VCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 505 ~~~h~~~v~~-~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
-.+|.+.=.. +.|. .++..+.+|- .+..+-+||..+.+....+..-. ....+..-
T Consensus 211 ~~~heG~k~~Raifl--~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------------------tSnGvl~P 269 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFL--ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-------------------TSNGVLLP 269 (472)
T ss_pred cccccCCCcceeEEe--ccCceeeeccccccccceeccCcccccCcceeEEec-------------------cCCceEEe
Confidence 8888764222 2233 4445444442 36789999987655433221100 00122222
Q ss_pred EecCCCCEEEE-EeCCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCC
Q 001415 581 QFDTTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD 629 (1082)
Q Consensus 581 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~d 629 (1082)
-|+++.+.+.. |-.|+.||.|.+....+ +.-+.......+-..+.|-|.
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 34555555544 55899999999877653 222322222334566777774
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=3.6e-17 Score=154.53 Aligned_cols=310 Identities=14% Similarity=0.175 Sum_probs=197.2
Q ss_pred ccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEee-ccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~ 492 (1082)
-++.+|.+.|+++.|-.+++ |.+|..-|.|++|++++..... .+. .|...|+.+.-.|++. +.+-+.|+.+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~ 80 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLI 80 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEE
Confidence 35789999999999988776 8889999999999999987655 466 4677899999999865 89999999999
Q ss_pred EEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1082)
Q Consensus 493 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 572 (1082)
+|++.-+..+.. |.-.++++.|.+.. +...+... .| +.+.|+...-. .
T Consensus 81 lw~ia~s~~i~i---~Si~~nslgFCrfS----l~~~~k~~---eq--------------------ll~yp~rgsde-~- 128 (323)
T KOG0322|consen 81 LWTIAYSAFISI---HSIVVNSLGFCRFS----LVKKPKNS---EQ--------------------LLEYPSRGSDE-T- 128 (323)
T ss_pred EEEccCcceEEE---eeeeccccccccce----eccCCCcc---hh--------------------heecCCcccch-h-
Confidence 999987654432 33445555543321 22222111 11 11111110000 0
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CC--CEEEEEECCCcEEEEEecC
Q 001415 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg--~~l~~~~~dg~i~iwd~~~ 649 (1082)
+.--++..-.+++-|-.. ......+.+..+.- ++ -++++|.++|.+.+||+.+
T Consensus 129 ---------------h~~D~g~~tqv~i~dd~~---------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 129 ---------------HKQDGGDTTQVQIADDSE---------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ---------------hhhccCccceeEccCchh---------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 000011111122111100 00011122222111 12 2466788889999999887
Q ss_pred CccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc
Q 001415 650 GIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN 729 (1082)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 729 (1082)
+...+. +... |.. ..+...|..++.++.|.+
T Consensus 185 ~~~~~~-~~~~------------------------------------~kv------------~~~~ash~qpvlsldyas 215 (323)
T KOG0322|consen 185 GDKIIQ-LPQS------------------------------------SKV------------ESPNASHKQPVLSLDYAS 215 (323)
T ss_pred Cceeec-cccc------------------------------------ccc------------ccchhhccCcceeeeech
Confidence 722211 1100 000 001112778888888887
Q ss_pred CCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCe
Q 001415 730 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 808 (1082)
Q Consensus 730 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~ 808 (1082)
.-..=++++.+..+..|+++....+ ..-+..+. + ..-.+..+.+-||++.+|+++ |+.
T Consensus 216 ~~~rGisgga~dkl~~~Sl~~s~gs---------------lq~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~R 274 (323)
T KOG0322|consen 216 SCDRGISGGADDKLVMYSLNHSTGS---------------LQIRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHR 274 (323)
T ss_pred hhcCCcCCCccccceeeeeccccCc---------------ccccceEE--e----cCCCccceEEccCCcEEeecccCCc
Confidence 7666677777778888876532110 00011111 1 345678899999999999998 999
Q ss_pred EEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEec
Q 001415 809 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 857 (1082)
Q Consensus 809 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 857 (1082)
|+||+.++..++..+.-|.+.|++++|+| +..++|.++.|++|.+|++
T Consensus 275 iRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 275 IRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999 8889999999999999986
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=158.15 Aligned_cols=121 Identities=10% Similarity=0.135 Sum_probs=98.3
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC------ceeeEEEEee-ccccCeeEEEecCCCCceEEEEEeC
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG------DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGD 487 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~------~~~~~~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s~ 487 (1082)
-+.+|.+.|.++.||.++++||+|+.|..+++|+++.. +.+. ... .|...|.|++|...+. .+++|+.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~---~~~~~H~SNIF~L~F~~~N~--~~~SG~~ 125 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG---VMEHPHRSNIFSLEFDLENR--FLYSGER 125 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce---eccCccccceEEEEEccCCe--eEecCCC
Confidence 47899999999999999999999999999999998632 2222 222 3557999999998777 7999999
Q ss_pred CCcEEEEEccCCceeEEeec--CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415 488 DKTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 488 d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1082)
+++|...|+++.+.+..+.. ..+.|+.+..+|.. +.+++.+.++.|.+||.+.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccC
Confidence 99999999999998887752 23478888888764 5788888888888887764
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.3e-18 Score=188.89 Aligned_cols=284 Identities=16% Similarity=0.247 Sum_probs=213.6
Q ss_pred ceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 350 ~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
.+.++++|...|+|+.|...|+| +++|+.|..|+||..+++.++.. ..||.+.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 34578899999999999999996 99999999999999999998875 88999999999999
Q ss_pred cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE---ee
Q 001415 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FE 506 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~---~~ 506 (1082)
.+..++|+++.|..|++|.+..+..+. .+.||++.|++++|+|- .+.+.||++++||.+-.-.+.. +.
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998777 78999999999999984 4778999999999871111111 11
Q ss_pred c-CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415 507 G-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1082)
Q Consensus 507 ~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~ 585 (1082)
. ....+.++.| ..++..+++++.|+.-..|....... +...+.-+.++.|-
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~-------------------- 364 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDL-------------------- 364 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccc--------------------
Confidence 1 1233444444 34456789999999888885542111 00000111111110
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccc
Q 001415 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 664 (1082)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1082)
..+.+++-.+-.+++|++.+|.+...+.++.+ .+..+.++| +.....+++.||...|||+..+........+|..
T Consensus 365 ~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k-- 440 (1113)
T KOG0644|consen 365 SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK-- 440 (1113)
T ss_pred cccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce--
Confidence 12456666788899999999999988887766 678899999 5566678899999999999988554444444322
Q ss_pred cccccccCCCCccccCCCCceeeeccCCceeEEEeccc
Q 001415 665 SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTEL 702 (1082)
Q Consensus 665 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~ 702 (1082)
..+.+++++|..++....-|.+.+......
T Consensus 441 --------l~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 441 --------LVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred --------eeccccCCCCceEecCCCCCceEEeccCCC
Confidence 223445999999998888888888876554
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.6e-17 Score=188.54 Aligned_cols=253 Identities=15% Similarity=0.202 Sum_probs=193.9
Q ss_pred cccceeEEEEccCCce----eeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEE
Q 001415 718 RATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 793 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~----l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 793 (1082)
...+...++|.+.|.. |+.+..||.|.+|+......+.+.. . ......|.+.|..+.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~---la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------V---LATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------H---HhhhcccCCceeeee
Confidence 4567788999998876 7888889999999865321110000 0 111223999999999
Q ss_pred eecCCC-eEEEee-CCeEEEEecCCCeeEEEEC--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc
Q 001415 794 LSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 869 (1082)
Q Consensus 794 ~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 869 (1082)
|++... +||+|+ +|.|.|||+.+.+...++. .....|.+++|+....++||+++.+|.+.|||++..+.+-.+..|
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~ 203 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT 203 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC
Confidence 999777 888887 5999999999765555542 245679999999878889999999999999999998888777766
Q ss_pred cc--CEEEEEEeCCC-CEEEEEeCCC---cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeE
Q 001415 870 SK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 943 (1082)
Q Consensus 870 ~~--~V~~l~~s~d~-~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 943 (1082)
.+ .+..++|+|+. ..|++++.|. .|.+||++.-
T Consensus 204 ~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------------------------------------- 242 (1049)
T KOG0307|consen 204 PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------------------------------------- 242 (1049)
T ss_pred CCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----------------------------------------
Confidence 55 46789999986 3456665543 4777877651
Q ss_pred EEEEccCcceeeeeccCCCCcceeEEEEcCCC-ceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEE
Q 001415 944 AIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1022 (1082)
Q Consensus 944 ~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg-~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~ 1022 (1082)
...++.+. +|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+. .+ +. +...+.
T Consensus 243 -------ssP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p------~~--~n--W~fdv~ 303 (1049)
T KOG0307|consen 243 -------SSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP------AQ--GN--WCFDVQ 303 (1049)
T ss_pred -------CCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC------CC--Cc--ceeeee
Confidence 11222232 789999999999966 899999999999999999999998876 11 23 445899
Q ss_pred EeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1023 AHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1023 ~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
|+|.+...++.++-||.|-|+.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999998877
No 181
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.3e-16 Score=152.46 Aligned_cols=396 Identities=14% Similarity=0.166 Sum_probs=235.6
Q ss_pred EEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001415 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1082)
Q Consensus 425 ~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~ 504 (1082)
-++|||+|+|+|+++.- .+.|-|..+-+..+ +-.--+.|..+.|..|.-. .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999765 67788877755433 2222457889999988875 566778899999999999988888
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~ 584 (1082)
+.....++.+++|+|++. +.|.+...|-.|.+|.+.+..... +.-....+..++|.+||
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg------------------- 145 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDG------------------- 145 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCC-------------------
Confidence 888888999999987653 577777889999999998754332 22222333445555554
Q ss_pred CCCEEEEEeCCCe---EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEEC--CCcEEEEEecCCccceeeccc
Q 001415 585 TKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--DNGIKILATSDGIRLLRTFEN 659 (1082)
Q Consensus 585 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~ 659 (1082)
++.+.++.... +.+.....-..+..+....- ..+.+.|+|||..|++-.. +-.|..|....|..
T Consensus 146 --~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~--DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k------- 214 (447)
T KOG4497|consen 146 --QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI--DLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLK------- 214 (447)
T ss_pred --ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc--cccCceECCCCcEEEEecchhhheeeeeeecccee-------
Confidence 45555553211 11211122233444443332 4678999999998876432 12222222222200
Q ss_pred ccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc-
Q 001415 660 LAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA- 738 (1082)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 738 (1082)
.+++ +|.++.+++|+.|+.+++.+- +.|.+-++++--++
T Consensus 215 --------~v~w-------sP~~qflavGsyD~~lrvlnh-------------------------~tWk~f~eflhl~s~ 254 (447)
T KOG4497|consen 215 --------FVEW-------SPCNQFLAVGSYDQMLRVLNH-------------------------FTWKPFGEFLHLCSY 254 (447)
T ss_pred --------EEEe-------ccccceEEeeccchhhhhhce-------------------------eeeeehhhhccchhc
Confidence 2223 566666666666665555331 23333333221111
Q ss_pred cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecC---
Q 001415 739 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--- 815 (1082)
Q Consensus 739 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~--- 815 (1082)
.|....+ ...++-.. ..-...++.|.|..-- +.-....=.+|...
T Consensus 255 ~dp~~~~----------------------~~ke~~~~---------~ql~~~cLsf~p~~~~-a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 255 HDPTLHL----------------------LEKETFSI---------VQLLHHCLSFTPTDLE-AHIWEESETIYEQQMTP 302 (447)
T ss_pred cCchhhh----------------------hhhhhcch---------hhhcccccccCCCccc-cCccccchhhhhhhhcc
Confidence 1111000 00000000 1112335555543210 00000000112211
Q ss_pred ----CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCC--CcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEe
Q 001415 816 ----TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 816 ----~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 889 (1082)
..++...+......+.-++|++ |..++|+-.+. +.+.+||++..++...+. ...+|....|.|....|+.+.
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc
Confidence 1122223334455688899999 89999886543 589999999877665554 567899999999999999988
Q ss_pred CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecC
Q 001415 890 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 941 (1082)
Q Consensus 890 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 941 (1082)
....+.+|.... .+++..+... -.|..+.|.-+|..++..+..
T Consensus 381 g~srLY~W~psg-----~~~V~vP~~G----F~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 381 GKSRLYFWAPSG-----PRVVGVPKKG----FNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred CCceEEEEcCCC-----ceEEecCCCC----ceeeeEEecCCCcEEEEEcCC
Confidence 888899999877 3344443322 468999999999998875433
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=141.12 Aligned_cols=288 Identities=11% Similarity=0.123 Sum_probs=195.4
Q ss_pred cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415 720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 799 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 799 (1082)
..|.+-+++|.+++++++..+|.|.+..+..-..... ...|+... +..++|..+++.++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~i--v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKI--VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcce--eeccccCCCeeeeeee--hh
Confidence 3466678999999999999999999998764332111 01111111 1224599999999997 56
Q ss_pred eEEEeeCCeEEEEecCCCee------EEEEC-------CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee
Q 001415 800 YVMSASGGKISLFNMMTFKT------MATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 866 (1082)
Q Consensus 800 ~l~~~sdg~i~iwd~~~~~~------~~~~~-------~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 866 (1082)
+|++++||.|+-|....... +.... ..-.+|+++...|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 88899999999887653211 11111 12245899999995555555 457999999999999999999
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCC--CCCcEEEEcCCCcEEEEEecCeEE
Q 001415 867 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLA 944 (1082)
Q Consensus 867 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~fspdg~~l~~~~d~~i~ 944 (1082)
+||++.|.++.--.....+.||+.||++|+||.++++... .+.......... .+---.+..-+..+|+++....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence 9999999999985566678999999999999999976532 222222111100 011114455567799998888999
Q ss_pred EEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEe
Q 001415 945 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1024 (1082)
Q Consensus 945 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~ 1024 (1082)
+|+++..++...+..++ ++..+.|- .+.++++++.+.|.-|.+. |.+...+. .+| ...++..++
T Consensus 231 lwhLrsse~t~vfpipa---~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s----~~c~s~s~~ 294 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPA---RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES----TACYSASWQ 294 (325)
T ss_pred EEeccCCCceEEEeccc---ceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc----cceeeeccc
Confidence 99999999999988744 67777884 4577888888889999875 44443333 121 112233343
Q ss_pred CCCCCeEEEEecCCcEEEE
Q 001415 1025 PQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus 1025 ~~d~~~l~s~~~dg~v~vW 1043 (1082)
.+--+.+-.++..+.+.+.
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 3224556666777777665
No 183
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-15 Score=162.70 Aligned_cols=573 Identities=11% Similarity=0.089 Sum_probs=326.2
Q ss_pred CCCCcceeeecC-CCCCceEEEEecC-----------CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccc
Q 001415 345 EDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ 412 (1082)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~~~~spd-----------g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~ 412 (1082)
|...-+.++.+. |...|+.+.|+|- .+.++|++...|.|.+||...+..+..
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~---------------- 104 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW---------------- 104 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh----------------
Confidence 333445555555 8899999999763 345788999999999999988776653
Q ss_pred cccccCCCCceeEEEEec---CC-CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCC
Q 001415 413 AALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1082)
Q Consensus 413 ~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d 488 (1082)
+..|..+|..++|-| +. ..|++-....++.+||..+|+.+. ....-.....|+.+.|-+...+.+. +..
T Consensus 105 ---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l-~s~ 177 (1062)
T KOG1912|consen 105 ---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVL-GSK 177 (1062)
T ss_pred ---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEE-ccC
Confidence 778899999999987 44 456666677899999999998765 3333344667788888665523333 344
Q ss_pred CcEEEEEcc-------CCceeEEeecCCc----------------C-------eEEE--eeeecCCceEEEEecCCCcEE
Q 001415 489 KTIKVWDAT-------NGAKQYIFEGHEA----------------P-------VYSV--CPHHKENIQFIFSTALDGKIK 536 (1082)
Q Consensus 489 ~~i~vwd~~-------~~~~~~~~~~h~~----------------~-------v~~~--~~~~~~~~~~l~s~~~dg~i~ 536 (1082)
|.+-+-+.- .|+..+.-..|.. . ..+. +|+|.- +-++.......+.
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~prell 255 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFPRELL 255 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEeccceE
Confidence 555554432 1233332222222 0 0111 233333 2344445567788
Q ss_pred EEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCC-----------
Q 001415 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------- 605 (1082)
Q Consensus 537 iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 605 (1082)
++|++-..+......+.+.+.-+.+-|+++ ...+++.-.||.+.+|-.+.
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~-------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPR-------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCC-------------------cceEEEEecCCeEEEEEeeccCccccccchh
Confidence 999887777766666666666666777665 23588888899999996543
Q ss_pred -----cceEEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEecCCccceeecccccccccccccccC-------
Q 001415 606 -----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK------- 672 (1082)
Q Consensus 606 -----~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 672 (1082)
++....+....... +...+..|. ...++.--.+|.+.+|.+.++........+...... ...|.
T Consensus 317 l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~--pf~f~~~~~~v~ 393 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL--PFDFNLSTKLVG 393 (1062)
T ss_pred hccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc--cccccCceeehh
Confidence 22222222212211 223334443 445555566788888888765211110000000000 00000
Q ss_pred --------------------------CC-CccccCCC-------CceeeeccCCceeEEEecccCCCCccccccccCccc
Q 001415 673 --------------------------NG-DVRSLADV-------KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 718 (1082)
Q Consensus 673 --------------------------~~-~~~~s~~~-------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 718 (1082)
.. .....|.+ ..++.|...|+|.++|+.+......... |
T Consensus 394 k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv-------h 466 (1062)
T KOG1912|consen 394 KTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV-------H 466 (1062)
T ss_pred hccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc-------c
Confidence 00 00011122 2457899999999999987644433332 8
Q ss_pred ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
...|.++.|..+...+-.+... .. +........+.+-+..+|.-....-.....+.+|+.+..|..|
T Consensus 467 t~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~ 533 (1062)
T KOG1912|consen 467 TSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSG 533 (1062)
T ss_pred ccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccC
Confidence 8899999998877644333221 00 0000001123455677776554332233468899999999999
Q ss_pred CeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe-cCCCc----------------EEEEEeCCCcEEEEeccc-
Q 001415 799 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNN----------------IIAIGMDDSSIQIYNVRV- 859 (1082)
Q Consensus 799 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~----------------~lasg~~dg~v~iwd~~~- 859 (1082)
+|++..- +.-+.+||+++..+++.....-..++.+.|+ | .-. ..+..+ +..+++.+..
T Consensus 534 ~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~ 610 (1062)
T KOG1912|consen 534 RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHITLS 610 (1062)
T ss_pred ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheehhhh
Confidence 9999997 5679999998877776655444558889998 3 111 223322 2233333221
Q ss_pred ------cee-eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCC
Q 001415 860 ------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 932 (1082)
Q Consensus 860 ------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 932 (1082)
+.. ....+...-.+..|+| .+..|+.|+.+|.+++||+.....- .....+. + ......+.+-|..
T Consensus 611 a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SR--g~~d~p~-~---ra~~l~~~~ipG~ 682 (1062)
T KOG1912|consen 611 ALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSR--GVRDSPD-P---RAHSLTFPQIPGD 682 (1062)
T ss_pred hhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEeccccccc--CccCCCC-c---hhhheecccCCCC
Confidence 111 0111111122334666 4678999999999999998763211 0111111 0 0122333444543
Q ss_pred cEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee
Q 001415 933 IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 997 (1082)
Q Consensus 933 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~ 997 (1082)
..+++-....+-+||.+....+..+.....+..+..+.+......++ ..|.++++-.+.....
T Consensus 683 ~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 683 HTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP 745 (1062)
T ss_pred ceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence 34444445568899988888777663222234455555544433333 2344777766655443
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=155.85 Aligned_cols=287 Identities=16% Similarity=0.196 Sum_probs=195.4
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCC-CCceEEEEEeCCCcEEEEEccCCceeEE--eecCC
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHE 509 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~d-g~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~ 509 (1082)
..+|++...|.|++||..+++.+. .+++|...++.++|..+ +.. .+.+|+.||+|++||+++...... +..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 568899999999999999988777 78999999999999875 333 799999999999999998765544 34454
Q ss_pred -cCeEEEeeeecCCceEEEEecC----CCcEEEEecCCCCcee--eecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415 510 -APVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 510 -~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
.+..+++ ..-+++.+++|.. +-.|.+||++...+.. ....|...|+.+.|.|...
T Consensus 117 ~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p---------------- 178 (376)
T KOG1188|consen 117 GTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP---------------- 178 (376)
T ss_pred CCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----------------
Confidence 3444444 3334467777753 5679999999876632 3455666677766666543
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcc----eEEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEecCCccceeec
Q 001415 583 DTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF 657 (1082)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1082)
+.|++|+.||.|.++|+.... ++..+. ....|.++.|..++ +.|.+-+..++..+|++..+......-
T Consensus 179 ----nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 179 ----NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ----CeEEeecccceEEeeecCCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 478999999999999987542 222332 22358889999877 458888999999999999885322221
Q ss_pred cccc-cccccccccc-CCCCccccCCCCceeeecc-CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCcee
Q 001415 658 ENLA-YDASRTSENS-KNGDVRSLADVKPRITEES-NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 734 (1082)
Q Consensus 658 ~~~~-~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 734 (1082)
.... ....+...+. .-.+.....++...+.++. -+...++-+.................+|...|+++.|...+..+
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL 331 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence 1100 0011000000 0011111233444444444 67777777765444444445555555688889999999999999
Q ss_pred eecccCCeEEEeec
Q 001415 735 LALASNAIHLLWKW 748 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~ 748 (1082)
.+++.||.+.+|..
T Consensus 332 ~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKV 345 (376)
T ss_pred eccCCCceEEEEec
Confidence 99999999999974
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=3.1e-15 Score=164.66 Aligned_cols=273 Identities=10% Similarity=0.132 Sum_probs=174.4
Q ss_pred eeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecc-cCCeEEEeeccccccCCCCCcccccC
Q 001415 686 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVA 764 (1082)
Q Consensus 686 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~ 764 (1082)
++...++.|.+|++...........+. .......++++|+++.|++++ .++.+.+|++..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------- 66 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence 344678999999996422222222221 234567889999999887664 468888887641
Q ss_pred ccccCCCCcceeec-ccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCC-Ce---eEEEECCCCCCeeEEEEec
Q 001415 765 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 837 (1082)
Q Consensus 765 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~---~~~~~~~~~~~v~~l~~sp 837 (1082)
.+..... ... .......++|+|+|+++++++ ++.|.+|++.+ +. ....+. +......++++|
T Consensus 67 -------~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 -------DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred -------CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 1111000 000 123456899999999998886 68899999974 22 222232 233467789999
Q ss_pred CCCcEE-EEEeCCCcEEEEecccceeee-------eecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--ccccc
Q 001415 838 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK 906 (1082)
Q Consensus 838 ~~~~~l-asg~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~--~~~~~ 906 (1082)
+++++ ++...++.|.+||+.+...+. .... ......++|+|||++++++.. +++|.+|+++. ++...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 66666 455567999999997632221 1111 234568999999999988876 89999999984 22211
Q ss_pred ceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE--ecCeEEEEEccCcce----eeeeccCCCCcceeEEEEcCCCceEEE
Q 001415 907 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYA 980 (1082)
Q Consensus 907 ~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~iwd~~~~~~----~~~~~~~~h~~~i~~l~~s~dg~~l~t 980 (1082)
...+...............+.|+|||++++++ .++.|.+|+++.... +..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11111111110111223468999999999986 457899999865432 222221 124567899999999998
Q ss_pred eec-CCcEEEEecC
Q 001415 981 CFL-DATVCVFSAA 993 (1082)
Q Consensus 981 ~s~-dg~v~vwd~~ 993 (1082)
++. +++|.+|+++
T Consensus 291 a~~~~~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKSHHISVYEID 304 (330)
T ss_pred EEccCCcEEEEEEc
Confidence 885 8999999874
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.9e-17 Score=169.64 Aligned_cols=229 Identities=16% Similarity=0.285 Sum_probs=179.6
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEcc-----CCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~-----~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~ 489 (1082)
.+..|.+.|+.++|.|-...|++++.||++.+|+++ ....+.++.++.+|.++|.|++.++++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3345677889999999999999999999 799999999
Q ss_pred cEEEEEccC------C----ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCC--ceE
Q 001415 490 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--WCT 557 (1082)
Q Consensus 490 ~i~vwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~ 557 (1082)
+|+.|++-. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+..... ...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995542 1 2345778999999999998777 4799999999999998876555 22222111 111
Q ss_pred EEEEccCC--------C---------------eeeec------ccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce
Q 001415 558 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1082)
Q Consensus 558 ~~~~s~d~--------~---------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1082)
++.+.... + .++.. .....+..+..+|.....+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22211110 0 11111 1123456678889899999999999999999999999
Q ss_pred EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 609 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
+.....|.. .++++++.|+|-+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 988876654 7899999999999999999999999987544
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.5e-16 Score=161.55 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=160.3
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw 494 (1082)
.+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||.+.|.++.|-|.....++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48899999999999999999999999999999999977766543 3599999999999997665589999999999999
Q ss_pred EccC----------CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccC
Q 001415 495 DATN----------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564 (1082)
Q Consensus 495 d~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d 564 (1082)
|+.. ....+.+..|...|..++..+... +.+.+++.||+|+-+|++.......-. .-.+..+.+.++
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~--~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDE--DCPSILVNYNPQ 199 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccc--cccHHHHHhchh
Confidence 9985 233455677999999888765443 689999999999999998633221000 001111111221
Q ss_pred CCeeeecccccceeEEEecCCCC-EEEEEeCCCeEEEEECCC--------cc----------eEEEEec-CC----C---
Q 001415 565 GTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDS--------VQ----------LLTSIDA-DG----G--- 617 (1082)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~~-~~----~--- 617 (1082)
- -...++.++|... +|++|+.|-..++||.+. +. ++.-+.. |- +
T Consensus 200 l---------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 200 L---------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred h---------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 1 1455667777654 677888999999999421 11 1222211 10 0
Q ss_pred --CCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 618 --LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 618 --~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
...++-+.|+|+|.-|++.-....|+++|+..++.
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 01145688999999888887778899999876643
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=181.75 Aligned_cols=284 Identities=19% Similarity=0.271 Sum_probs=208.4
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
+.+|...|+|+.|...|.++++|+.|..|+||..+++.++. ...||.+.|+.++.+.+.. ++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 78999999999999999999999999999999999998777 7999999999999998877 799999999999999
Q ss_pred ccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccccc
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~ 575 (1082)
+.++.++..+.+|++.|++++|+|.. +.+.||++++||.+- .. ..+.|.-.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~-------------~~y~prp~--------- 311 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EP-------------RIYVPRPL--------- 311 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-cc-------------cccCCCCC---------
Confidence 99999999999999999999998743 677899999998761 00 01111000
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1082)
+..++ .-+.++.|...+..+++++.|+.-..|...-
T Consensus 312 --------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~------ 347 (1113)
T KOG0644|consen 312 --------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQ------ 347 (1113)
T ss_pred --------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhH------
Confidence 00000 0123344444455555666655544443210
Q ss_pred ecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceee
Q 001415 656 TFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 735 (1082)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 735 (1082)
+++..++-.++
T Consensus 348 ---------------------------------------------------------------------l~~~~~~lif~ 358 (1113)
T KOG0644|consen 348 ---------------------------------------------------------------------LAWRSNLLIFV 358 (1113)
T ss_pred ---------------------------------------------------------------------hhhhccceEEE
Confidence 00100110011
Q ss_pred ecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEec
Q 001415 736 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNM 814 (1082)
Q Consensus 736 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~ 814 (1082)
+...| -..+.+++ .+-.+.+|++
T Consensus 359 t~ssd--------------------------------------------------------~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 359 TRSSD--------------------------------------------------------LSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred ecccc--------------------------------------------------------ccccceeeeeeeEeeeeec
Confidence 11110 00122333 3466889999
Q ss_pred CCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee-cccccCEEEEEEeCCCCEEEEEeCCCc
Q 001415 815 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQ 893 (1082)
Q Consensus 815 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 893 (1082)
.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|..++.. .+| +.+..-+||+||..++....-|.
T Consensus 383 ~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred ccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCc
Confidence 9999999999999999999999988888889999999999999988666544 455 55667799999999999888898
Q ss_pred EEEEEcCCcc
Q 001415 894 LCVWSSDGWE 903 (1082)
Q Consensus 894 i~vwd~~~~~ 903 (1082)
+.|.....++
T Consensus 462 l~i~g~gqs~ 471 (1113)
T KOG0644|consen 462 LYILGTGQSK 471 (1113)
T ss_pred eEEeccCCCc
Confidence 8888765543
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=3.1e-15 Score=148.85 Aligned_cols=241 Identities=13% Similarity=0.191 Sum_probs=185.1
Q ss_pred CCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEecccceee
Q 001415 786 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 863 (1082)
Q Consensus 786 ~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 863 (1082)
...+..+.|..|...|..|+....++|+.+..............|..+-|+. .++|..+.+. .+++++.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677799999999999977789998886655444444445577778876 4666666544 4899998888777
Q ss_pred eeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E--ec
Q 001415 864 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 940 (1082)
Q Consensus 864 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~--~d 940 (1082)
..+. ...+|.++.+. .++|+++=.+. |.|||+++.+. +.......+...++.++.+++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 6665 44678888885 55677665555 99999999543 3333322221234556666667779998 3 56
Q ss_pred CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCc-EEEEecCCceeeeeeCCCeecCCCCCCCCceee
Q 001415 941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1019 (1082)
Q Consensus 941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1019 (1082)
|.|.+||+.+.+.+..+. .|.+++.+++|++||.+|||+|+.|+ ||||.+.+|+.+..++...+ .+...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEE
Confidence 899999999999998887 89999999999999999999999998 69999999999999884443 24456
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1020 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1020 ~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+++|+| |+++|++.+..++|+++.++...
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 68999999999999999998866
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.4e-16 Score=153.53 Aligned_cols=323 Identities=11% Similarity=0.091 Sum_probs=211.9
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
-+++|.+.|+++.||.+|++ ||+|+.|..+++|+++.-...++ ..|.+. .-..|...|.|++|....
T Consensus 51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCC
Confidence 46789999999999999995 99999999999999975433221 011111 234667899999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccc---cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-ee--EEee
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQ--YIFE 506 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~---~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~--~~~~ 506 (1082)
++|.+|..+++|.+-|+++.+.+. ...|. +.|+.+..+|-.. .|++.+.++.|.+||.+... .+ ..+.
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIY----VANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred eeEecCCCcceeEeeecccceeee----eecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence 999999999999999999987665 22344 4899999999987 79999999999999987644 22 2223
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
........+.|+|... .+|++.+..+-+-+||.+................ ......-.+.|+|.|
T Consensus 192 N~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~--------------~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP--------------QENTEWMGSLWSPSG 256 (609)
T ss_pred CCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCc--------------ccchhhhheeeCCCC
Confidence 3345566777887654 6899999999999999876433221100000000 000112234566666
Q ss_pred CEEEEEeCCCeEEEEECCCcceE-EEEecC----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcccee-ecccc
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQLL-TSIDAD----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR-TFENL 660 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~----~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~ 660 (1082)
++|++.-....-.+||+.+..+. ..+... -....+.+++|..|-. +++|+.+-.|++|.+........ +.-++
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCc
Confidence 67777665555567777665442 222211 1123466788876554 89999999999998753311110 00111
Q ss_pred cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415 661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 740 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 740 (1082)
..... |. ..++- + .+.. + ++|...+..+.|++....|++.+-.
T Consensus 336 ~~~~~--------------~~-~~~i~----~--------------~~~V--L--rGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 336 DEEEM--------------PS-EIFIE----K--------------ELTV--L--RGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred chhhC--------------ch-hheec----c--------------eeEE--E--ecccccccceeecCCcceEeccchh
Confidence 10000 00 00000 0 0111 1 2388889999999999999999999
Q ss_pred CeEEEee
Q 001415 741 AIHLLWK 747 (1082)
Q Consensus 741 ~~i~iw~ 747 (1082)
..+++|.
T Consensus 379 ~~~KlWS 385 (609)
T KOG4227|consen 379 NSFKLWS 385 (609)
T ss_pred hheeccc
Confidence 9999995
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=6.5e-15 Score=162.07 Aligned_cols=252 Identities=11% Similarity=0.099 Sum_probs=163.8
Q ss_pred CCccEEEeecCCCeEEEee--CCeEEEEecC-CCee--EEEECCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEeccc-
Q 001415 787 EAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV- 859 (1082)
Q Consensus 787 ~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~-~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~- 859 (1082)
.....++++|++++|++++ ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4567889999999987775 5889999987 3332 22222 234577899999 777776665 488999999974
Q ss_pred ce---eeeeecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCcccccc---eeeeccCCCCCCCCCCcEEEEcCCC
Q 001415 860 DE---VKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQ 932 (1082)
Q Consensus 860 ~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspdg 932 (1082)
+. .+..+.+ .....+++++|+++++++++ .++.|.+||+++...... .......+ .....++|+|||
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 32 2233332 23467789999999886554 568999999987322111 11122222 345789999999
Q ss_pred cEEEEE--ecCeEEEEEccC--cc--eeeeeccC----CCCcceeEEEEcCCCceEEEeec-CCcEEEEecCCceeeeee
Q 001415 933 IHFLVV--HETQLAIFETTK--LE--CVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRI 1001 (1082)
Q Consensus 933 ~~l~~~--~d~~i~iwd~~~--~~--~~~~~~~~----~h~~~i~~l~~s~dg~~l~t~s~-dg~v~vwd~~~~~~~~~~ 1001 (1082)
++++++ .++.|.+|+++. ++ .+..+... .+......+.|+|||++|+++.. ++.|.+|++........+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999885 368999999973 32 23322210 11223346899999999999864 689999999653321111
Q ss_pred CCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEec-CCcEEEEccCCCCCcccc
Q 001415 1002 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWGV 1054 (1082)
Q Consensus 1002 ~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~-dg~v~vW~~~~~~~~~~~ 1054 (1082)
. ...+.+ ..+..+.++| ||++|+++.. +++|.+|++....+.+..
T Consensus 267 ~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~ 312 (330)
T PRK11028 267 E--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTE 312 (330)
T ss_pred e--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEE
Confidence 1 111112 2334688999 5788777665 899999988654433433
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.4e-16 Score=152.40 Aligned_cols=276 Identities=13% Similarity=0.135 Sum_probs=191.6
Q ss_pred EEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--CCCeEEEEeCCCeEEEEEcc
Q 001415 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH 450 (1082)
Q Consensus 373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~v~iwd~~ 450 (1082)
.+|++-..|.|++||..+++.+.. +++|...++.++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 588899999999999999888764 788888999999988 46678899999999999999
Q ss_pred CCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEe----CCCcEEEEEccCCce-eEEe-ecCCcCeEEEeeeecCCc
Q 001415 451 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI 523 (1082)
Q Consensus 451 ~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s----~d~~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 523 (1082)
......+. .+.+|. .+..|++..-.++ ++++|. .+-.|.+||++..+. ++.+ ..|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 455565 4666777665666 677765 456799999998766 5544 56999999999999765
Q ss_pred eEEEEecCCCcEEEEecCCCCce---eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEE
Q 001415 524 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1082)
Q Consensus 524 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 600 (1082)
++|++|+.||.|.++|+...... ...-.+...|..+.|..++- +++.+-+...+..+
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~ 238 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI 238 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence 79999999999999999764321 12222334455555555542 35778888899999
Q ss_pred EECCCcceEEEEecCCCC----------CCcCeEEEcC-CCCEEEEEEC-CCcEEEEEecC---C--ccceeeccccccc
Q 001415 601 WDMDSVQLLTSIDADGGL----------PASPRIRFNK-DGCLLAVSTN-DNGIKILATSD---G--IRLLRTFENLAYD 663 (1082)
Q Consensus 601 wd~~~~~~~~~~~~~~~~----------~~i~~~~~s~-dg~~l~~~~~-dg~i~iwd~~~---~--~~~~~~~~~~~~~ 663 (1082)
|+++.+.....+....-. ..+... .+| ++...+.++. -+...++-+.. + ......+.++...
T Consensus 239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e 317 (376)
T KOG1188|consen 239 YELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE 317 (376)
T ss_pred EEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH
Confidence 999988765544322100 011111 123 4455555544 55665554432 2 2334455555555
Q ss_pred ccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415 664 ASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~ 700 (1082)
+.+ .+.| ...+..+.+|+.||.+.+|...
T Consensus 318 iVR-~i~~-------~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 318 IVR-DILF-------DVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HHH-HHhh-------hcccceeeccCCCceEEEEecC
Confidence 544 4444 5678889999999999999864
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=2.6e-15 Score=155.59 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=135.9
Q ss_pred eecC-CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415 353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 353 ~~~~-h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1082)
+.+. |.+.|.|-.|+|||.- |++++.||.|++|.- +|.+.. .+.....+|.|++|.|+
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSr-sGMLRS-------------------tl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSR-SGMLRS-------------------TVVQNEESIRCARWAPN 156 (737)
T ss_pred hhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEec-cchHHH-------------------HHhhcCceeEEEEECCC
Confidence 3344 9999999999999996 888899999999984 343332 24556779999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 511 (1082)
...++.+. .+.+.|=-+.-...+- ..+.|.+-|.++.|++... ++++|+.|...+||| ..|..+..-..|..+
T Consensus 157 S~~vl~c~-g~h~~IKpL~~n~k~i---~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 157 SNSIVFCQ-GGHISIKPLAANSKII---RWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWD-AQGANLFTSAAEEYA 229 (737)
T ss_pred CCceEEec-CCeEEEeeccccccee---EEeccCcEEEEeecCcccc--ceeecCCceeEEeec-ccCcccccCChhccc
Confidence 98888774 4557776666543332 6889999999999999999 899999999999999 678888888889999
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|++++|.|+. .++.++. +++|+= ....+.|..++||+||..+..|...
T Consensus 230 ITSva~npd~---~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 230 ITSVAFNPEK---DYLLWSY-NTARFS-----------SPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred eeeeeecccc---ceeeeee-eeeeec-----------CCCccceEEEEEcCCCceeeccccC
Confidence 9999998763 3444442 333311 2234567778888888755444443
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=4.2e-16 Score=149.16 Aligned_cols=228 Identities=17% Similarity=0.211 Sum_probs=174.3
Q ss_pred CCeEEEEecCCCe--e-EEEECCCCCCeeEEEEecCCCcEEEEEeCC-------CcEEEEeccc---------ceeeeee
Q 001415 806 GGKISLFNMMTFK--T-MATFMPPPPAATFLAFHPQDNNIIAIGMDD-------SSIQIYNVRV---------DEVKSKL 866 (1082)
Q Consensus 806 dg~i~iwd~~~~~--~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-------g~v~iwd~~~---------~~~~~~l 866 (1082)
++.|.+.+++... . ...|..+.++|..++-+|.+.++|++...+ ..+.||.+.. .+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5778877776432 2 245677889999999999888999987753 2467898753 2445555
Q ss_pred c-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC--CCcEEEEEecCeE
Q 001415 867 K-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVVHETQL 943 (1082)
Q Consensus 867 ~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp--dg~~l~~~~d~~i 943 (1082)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++........+....... .....++-+||| ||..+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence 5 5667999999999999999886 78899999998655322222111111 113457788998 8999999999999
Q ss_pred EEEEccCcceeeeeccCCCCcceeEEEEcCCCc-eEEEeecCCcEEEEecCCcee-eeeeCCCeecCCCCCCCCceeeEE
Q 001415 944 AIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVI 1021 (1082)
Q Consensus 944 ~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~~ 1021 (1082)
..||+++..+...+. .+|...|..+.|.|+.+ +|+++++||.|++||...-+. +..+. +| .|.++ ++
T Consensus 196 ~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~H-sHWvW--~V 264 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GH-SHWVW--AV 264 (370)
T ss_pred EEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CC-ceEEE--EE
Confidence 999999988877665 47889999999999877 588999999999999986543 33333 54 67777 89
Q ss_pred EEeCCCCCeEEEEecCCcEEEEccCC
Q 001415 1022 AAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1022 ~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
.|+|...+++++||.|..|.+|...+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccc
Confidence 99997778999999999999998754
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.2e-15 Score=146.12 Aligned_cols=212 Identities=15% Similarity=0.229 Sum_probs=159.6
Q ss_pred ccccccCCCCceeEEEEec-CCCeEEEEeCC-------CeEEEEEccCCcee------eEEEEee-ccccCeeEEEecCC
Q 001415 412 QAALVKDPGVSVNRVIWSP-DGSLFGVAYSR-------HIVQIYSYHGGDEV------RQHLEID-AHVGGVNDIAFSHP 476 (1082)
Q Consensus 412 ~~~~~~~h~~~V~~l~~sp-dg~~las~~~d-------~~v~iwd~~~~~~~------~~~~~~~-~h~~~V~~l~fs~d 476 (1082)
..+++..|.+.|+.++-+| |.+.|+++..+ ..+.||.+...... .....+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3346888999999999999 77788887653 24789998643221 1111233 45678999999999
Q ss_pred CCceEEEEEeCCCcEEEEEccCCce-eEEee-----cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeee-
Q 001415 477 NKQLCVITCGDDKTIKVWDATNGAK-QYIFE-----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY- 549 (1082)
Q Consensus 477 g~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 549 (1082)
+.+ +++-. |..|.+|+++.+.. +..+. +|....++-+|+|..+++.+++.+ |+++..||+++..+...+
T Consensus 135 s~k--lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 135 SDK--LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred CCe--eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh
Confidence 984 55554 88999999998766 33332 355667888899988887777664 899999999987766544
Q ss_pred cCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEEecCCCCCCcCeEEEcC
Q 001415 550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 550 ~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
..|+..|..+.|.|+.+. +|++++.||.|++||.+. ..++..+..|.+ .+.++.|+|
T Consensus 211 dAHgq~vrdlDfNpnkq~--------------------~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~ 268 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQH--------------------ILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNP 268 (370)
T ss_pred hhhcceeeeccCCCCceE--------------------EEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecC
Confidence 456667777777776552 578899999999999874 556788887777 899999999
Q ss_pred -CCCEEEEEECCCcEEEEEecC
Q 001415 629 -DGCLLAVSTNDNGIKILATSD 649 (1082)
Q Consensus 629 -dg~~l~~~~~dg~i~iwd~~~ 649 (1082)
..+++++|+.|..|.+|....
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccceEEEecCCCceeEEEeccc
Confidence 567888999999999987643
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1.4e-15 Score=169.04 Aligned_cols=260 Identities=20% Similarity=0.263 Sum_probs=191.3
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
..+.-..+|+|++|+|....++|.|..+|.|.+||+..+...... ........|..+|+.+.|-.+-
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEeccC
Confidence 566678999999999999989999999999999999887653210 1111356899999999998754
Q ss_pred C--eEEEEeCCCeEEEEEccCCceeeEEEEee---------ccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc---C
Q 001415 433 S--LFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---N 498 (1082)
Q Consensus 433 ~--~las~~~d~~v~iwd~~~~~~~~~~~~~~---------~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~---~ 498 (1082)
. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.-=+-. .
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcc
Confidence 4 49999999999999887433211110111 12346899999988777 78999999998773322 2
Q ss_pred Cc-----eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecC-CCCceeeecCCCCceEEEEEccCCCeeeecc
Q 001415 499 GA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1082)
Q Consensus 499 ~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~ 572 (1082)
+. .+..+..|.++|.++.++|-.. ..+.+++ |.++++|... ...+...+..+...+.+++|||-...
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa----- 455 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA----- 455 (555)
T ss_pred cccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-----
Confidence 22 2335567899999999877664 3444444 9999999887 55666666666777888888886542
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
.|+++..||.|.+||+.... ++.+.... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 456 ---------------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 ---------------VFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ---------------EEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 57888899999999986543 34444333 335678889999999999999999999998644
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=162.72 Aligned_cols=322 Identities=17% Similarity=0.217 Sum_probs=228.9
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEEeeeecCCceEEEEecCCCcEEEE
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 538 (1082)
.|.+|.+.|..|.|...|. .+++|+.|..|.+||+..++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999998887666 579888988889888888899999999999987
Q ss_pred ecCCCCce---eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC
Q 001415 539 LYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1082)
Q Consensus 539 d~~~~~~~---~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1082)
.+...... ..+..|.+.|..++.-|+.. ..|.++++|+.+.-.|++.+.....+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 66543332 23445556666666666554 25889999999999999887655444322
Q ss_pred CCC----CCcCeEEEcCCC-CEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeecc
Q 001415 616 GGL----PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEES 690 (1082)
Q Consensus 616 ~~~----~~i~~~~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 690 (1082)
... .....++..|.. ..+++++.|..+++||.+.-... ...+ + .-.| .|
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~----~---~~~f-------~p---------- 328 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG----V---LDKF-------CP---------- 328 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc----h---hhhc-------CC----------
Confidence 111 245688888854 58899999999999987543110 0000 0 0001 00
Q ss_pred CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCC
Q 001415 691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 770 (1082)
Q Consensus 691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1082)
.. +.. .....|++++|+.++.-+++...|-.|+++.-.... |.......++
T Consensus 329 ---------------~h-----l~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~----G~~p~~~s~~---- 379 (559)
T KOG1334|consen 329 ---------------HH-----LVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD----GSEPDPSSPR---- 379 (559)
T ss_pred ---------------cc-----ccc-cCcccceeEEecCCccceeeeecccceEEecccccc----CCCCCCCcch----
Confidence 00 000 134568999999998889998999899988433211 1111111100
Q ss_pred CCcceeecccCCCCCCCCccEEEe-ecCCCeEEEeeC-CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC
Q 001415 771 PSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 848 (1082)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~i~~l~~-s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~ 848 (1082)
........++......|..+-| -|...|+++|+| |.|.||+-.+++.++.+.+...-|+|+.-+| --.+||+.+-
T Consensus 380 --~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGi 456 (559)
T KOG1334|consen 380 --EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGI 456 (559)
T ss_pred --hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCC
Confidence 0111111333233455777765 588899999998 9999999999999999998888999999999 7789999999
Q ss_pred CCcEEEEecccce
Q 001415 849 DSSIQIYNVRVDE 861 (1082)
Q Consensus 849 dg~v~iwd~~~~~ 861 (1082)
|..|+||...+.+
T Consensus 457 d~DVKIWTP~~~e 469 (559)
T KOG1334|consen 457 DHDVKIWTPLTAE 469 (559)
T ss_pred ccceeeecCCccc
Confidence 9999999875443
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5e-15 Score=165.59 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=205.3
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC-CCCcCeEEEcC--CCCEEEEEECCCcEEEEEecCCcc
Q 001415 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~--dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
.-..+.|+|-...++++++.-.|+|||.+.++.+..+..... ...|+.+.+-. |..++++++.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 344567777777899999888999999999999887764432 23566676654 556788888888888886432100
Q ss_pred ceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCc
Q 001415 653 LLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 732 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 732 (1082)
+...++++ |++=..
T Consensus 1146 ----------------------------~~~eLVTa--------------------------------------w~~Ls~ 1159 (1387)
T KOG1517|consen 1146 ----------------------------KKPELVTA--------------------------------------WSSLSD 1159 (1387)
T ss_pred ----------------------------CCceeEEe--------------------------------------eccccc
Confidence 00001111 111011
Q ss_pred eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec-CCCeEEEeeCCeEEE
Q 001415 733 AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKISL 811 (1082)
Q Consensus 733 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~l~~~sdg~i~i 811 (1082)
.+.+....|.+. .|-. .|.++++|.-..|+|
T Consensus 1160 ~~~~~r~~~~v~------------------------------------------------dWqQ~~G~Ll~tGd~r~IRI 1191 (1387)
T KOG1517|consen 1160 QLPGARGTGLVV------------------------------------------------DWQQQSGHLLVTGDVRSIRI 1191 (1387)
T ss_pred cCccCCCCCeee------------------------------------------------ehhhhCCeEEecCCeeEEEE
Confidence 111111112222 2222 334444444477999
Q ss_pred EecCCCeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc---eeeeeecccccC--EEEEEEeCCCCE-
Q 001415 812 FNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR--ITGLAFSHALNV- 884 (1082)
Q Consensus 812 wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~--V~~l~~s~d~~~- 884 (1082)
||...-..+..+.. ....++++.-+-..|.++|+|..||.|++||.+.. ..+...+.|... |..+.+-+.|-.
T Consensus 1192 WDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred EecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc
Confidence 99998777776653 34457777766657899999999999999998754 356677889887 999999887755
Q ss_pred EEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccC----
Q 001415 885 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR---- 960 (1082)
Q Consensus 885 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~---- 960 (1082)
|++|+.||.|++||+...... ..+.... +....+..+++..+++...+|+++.+.|+||++. |+.+..+...
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e--~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKE--TFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred eeeeccCCeEEEEecccCccc--ccceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccc
Confidence 999999999999999984221 1122111 1110124799999999999999777999999984 4444443321
Q ss_pred -CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415 961 -ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 996 (1082)
Q Consensus 961 -~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~ 996 (1082)
...+.+.+++|.|-.-+||+|+.|.+|.||......
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 124578999999999999999999999999877654
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.9e-15 Score=167.45 Aligned_cols=305 Identities=17% Similarity=0.283 Sum_probs=207.7
Q ss_pred cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCC---cCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE---APVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 466 ~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1082)
..-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+. ..|+.+++-...|..++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3556678888777 57888777789999999999988886543 568888887777778999999999999996432
Q ss_pred CC-ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCc
Q 001415 543 LG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621 (1082)
Q Consensus 543 ~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 621 (1082)
.. ....+ |+ +|++=... ..+..+.. ..+.|.....+|+++|+-..|+|||.........+..... ..+
T Consensus 1143 ~~~~~~eL------VT--aw~~Ls~~-~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~v 1211 (1387)
T KOG1517|consen 1143 DKWKKPEL------VT--AWSSLSDQ-LPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLV 1211 (1387)
T ss_pred cccCCcee------EE--eecccccc-CccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccc
Confidence 21 11111 11 11111101 11111112 5677888888899988899999999998887777765433 235
Q ss_pred CeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415 622 PRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700 (1082)
Q Consensus 622 ~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~ 700 (1082)
+++.-+- .|+.+++|..||.|++||.+..... ..|..|.-
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------s~v~~~R~- 1252 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------SLVCVYRE- 1252 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCcc--------------------------------------ccceeecc-
Confidence 5554433 5799999999999999998654210 11222221
Q ss_pred ccCCCCccccccccCcccccc--eeEEEEccCCc-eeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceee
Q 001415 701 ELSEPNQCRSLRLPENLRATK--ISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 777 (1082)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1082)
|... |..+.+.+.|- .|++++.+|.|++||+........-. .+.-|+
T Consensus 1253 -----------------h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----iv~~~~-------- 1302 (1387)
T KOG1517|consen 1253 -----------------HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-----IVAHWE-------- 1302 (1387)
T ss_pred -----------------cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----eeeccc--------
Confidence 3333 77888888664 49999999999999876421000000 000010
Q ss_pred cccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECC-------CCCCeeEEEEecCCCcEEEEEeCCC
Q 001415 778 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDS 850 (1082)
Q Consensus 778 ~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~~lasg~~dg 850 (1082)
..+..+++..+++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| ..-++|+|+.|.
T Consensus 1303 -------yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1303 -------YGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADS 1373 (1387)
T ss_pred -------cCccceeeeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCc
Confidence 12358899999999999999999999999864 33333322 234689999999 888999999999
Q ss_pred cEEEEecccce
Q 001415 851 SIQIYNVRVDE 861 (1082)
Q Consensus 851 ~v~iwd~~~~~ 861 (1082)
+|.||.....+
T Consensus 1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred eEEEeecCCcC
Confidence 99999876543
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.9e-16 Score=159.52 Aligned_cols=309 Identities=11% Similarity=0.143 Sum_probs=229.1
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec--
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-- 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 430 (1082)
++-+|.+.|..|.|...|. +|++|+.|..|.+||+..+..... ...+|...|....|-|
T Consensus 137 kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFS 197 (559)
T ss_pred cccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCC
Confidence 4445999999999999999 599999999999999998876654 3678999999999988
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe---ec
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EG 507 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~ 507 (1082)
+.+.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++..-..+ ..
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeecc
Confidence 6678999999999999877655444444467789999999999999887 7899999999999999887554333 22
Q ss_pred CCc---CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecC
Q 001415 508 HEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1082)
Q Consensus 508 h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~ 584 (1082)
+.. ...+++..|... ..+++++.|..+++||.+.....-.. ..+ -.|.|+ .+. ....-.|++++|+.
T Consensus 277 ~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n----~~~--~~f~p~--hl~-~d~~v~ITgl~Ysh 346 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENN----GVL--DKFCPH--HLV-EDDPVNITGLVYSH 346 (559)
T ss_pred CCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhcccc----chh--hhcCCc--ccc-ccCcccceeEEecC
Confidence 333 456777776554 58999999999999998753222100 000 012221 111 12333677777877
Q ss_pred CCCEEEEEeCCCeEEEEECCC--c----------ceEEE-EecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEecCC
Q 001415 585 TKNRFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~i~~~~~-s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
++.-++++..|-.|+++.-.- | ..+.. +++|.....|..+-| .|...++++|+.=|.|.||+-.++
T Consensus 347 ~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 347 DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 777788888888899985432 2 22233 677777667888776 578899999999999999999888
Q ss_pred ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecc
Q 001415 651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTE 701 (1082)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 701 (1082)
+.++.+.+....+. ++.- .|--..|++++-|..|+||....
T Consensus 427 -eii~~MegDr~VVN--CLEp-------HP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 427 -EIIRFMEGDRHVVN--CLEP-------HPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred -HHHHHhhcccceEe--ccCC-------CCCCchhhccCCccceeeecCCc
Confidence 67777766655332 4444 56677899999999999998744
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.2e-14 Score=161.65 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=189.3
Q ss_pred CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce--eEE----eecCCcCeEEE
Q 001415 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV 515 (1082)
Q Consensus 442 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~--~~~----~~~h~~~v~~~ 515 (1082)
+.+.||++....... ..+ .-...|.++.|+|.... +++.|..+|.|.+||+..+.. ... ...|..+++.+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999999873332 122 34568999999998887 899999999999999987655 222 23578888888
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
.|..+..+.-+++++.||.|..|+++......... +. ..
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~--------------------------------------~~-~~-- 336 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL--------------------------------------LL-ES-- 336 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhc--------------------------------------cc-cc--
Confidence 88776655567888888888888665321110000 00 00
Q ss_pred CeEEEEECCCcceEEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCC
Q 001415 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNG 674 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1082)
.. ..+ ... .....+++++|.+ +-..+++|+..|.|..-..........
T Consensus 337 -~~-----~~~---~~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------- 385 (555)
T KOG1587|consen 337 -KK-----HKG---QQS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------- 385 (555)
T ss_pred -cc-----ccc---ccc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence 00 000 000 1122467888887 556788888888875422211100000
Q ss_pred CccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccC
Q 001415 675 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 754 (1082)
Q Consensus 675 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 754 (1082)
+.|.+..
T Consensus 386 --------------------------------------------------~~~~~~~----------------------- 392 (555)
T KOG1587|consen 386 --------------------------------------------------VSYKGHS----------------------- 392 (555)
T ss_pred --------------------------------------------------ccccccc-----------------------
Confidence 0000000
Q ss_pred CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC-eEEEeeCCeEEEEecC-CCeeEEEECCCCCCeeE
Q 001415 755 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSASGGKISLFNMM-TFKTMATFMPPPPAATF 832 (1082)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~l~~~sdg~i~iwd~~-~~~~~~~~~~~~~~v~~ 832 (1082)
....|.+.|+++.++|=+. .+.+++|.+++||... ...++..+..+...+++
T Consensus 393 --------------------------~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 393 --------------------------TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred --------------------------cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeee
Confidence 0001566677777776554 4455568888999887 66677777777778999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEecccc--eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415 833 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 833 l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
++|||....++|++..||.|.+||+... ..+...+-+....+.+.|+++|+.|+.|+..|++.+|++..
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999977789999999999999999754 44455555567778888999999999999999999999975
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1e-14 Score=142.26 Aligned_cols=251 Identities=14% Similarity=0.146 Sum_probs=175.7
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1082)
..+|+|.+|++|++ .+|++.....|.||.....+.-. ....+..|...|++++|+|....|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 47899999999999 59999999999999987655211 12258899999999999999999999
Q ss_pred EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee----EEeecCCcCeE
Q 001415 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY 513 (1082)
Q Consensus 438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~ 513 (1082)
|+.|..-++|....+..-++...+..|...++++.|+|.+. .+|+||..+.|.||-.+...-= +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999966655666667888999999999999999 6999999999999987654321 12234667899
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeec-ccccceeEEEecCCCCEEEEE
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA 592 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 592 (1082)
++.|++++ -+|++|+.|+..+++..--.... .-.....+-..+ |-|...... ...+-+..+.|+|+|+.|+-.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vd-ekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVD-EKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccc-cCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 99999766 68999999999999853210000 000000000000 001110111 233456677777888899999
Q ss_pred eCCCeEEEEECCCcc-eEEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001415 593 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1082)
Q Consensus 593 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 635 (1082)
+.|..+.+-|..... .+....... -+..++.|-.+...++.
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred cCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceeec
Confidence 999999999876654 233332222 25666777665544433
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.5e-14 Score=133.66 Aligned_cols=251 Identities=16% Similarity=0.214 Sum_probs=172.0
Q ss_pred CceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccc--cccCCCCceeEEEEecCCCeEEE
Q 001415 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA--LVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~h~~~V~~l~~spdg~~las 437 (1082)
.|.+-++||.+++ |++|..+|.|.+..+..-..-. ...+.+.. ...+|.++|+.++|. ..+|++
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~s-----------a~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls 77 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGS-----------AEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLS 77 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccc-----------cCCCCCcceeeccccCCCeeeeeee--hhheee
Confidence 3556689999995 9999999999999885421110 01111111 247999999999998 456777
Q ss_pred EeCCCeEEEEEccCCce---eeEEE--Eeeccc-----cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeec
Q 001415 438 AYSRHIVQIYSYHGGDE---VRQHL--EIDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1082)
Q Consensus 438 ~~~d~~v~iwd~~~~~~---~~~~~--~~~~h~-----~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 507 (1082)
|+ ||.|+=|.+..... .+... ....|. ..|+++-..|.... ++.++.|+.++-||+++|+..++++|
T Consensus 78 ~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 78 GG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred cc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcC
Confidence 75 59999998764332 01000 011222 35889999988774 56666899999999999999999999
Q ss_pred CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCC
Q 001415 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1082)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~ 587 (1082)
|++-|.++.--. .+ ..+++|+.||++|+||.++.+....+....++ ..+..+...-|.+++ -+..
T Consensus 155 HtDYvH~vv~R~-~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wigala--~~ed 219 (325)
T KOG0649|consen 155 HTDYVHSVVGRN-AN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWIGALA--VNED 219 (325)
T ss_pred Ccceeeeeeecc-cC-cceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCceeEEEe--ccCc
Confidence 999999987522 22 47999999999999999998877655433221 111111122233333 3344
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1082)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~ 648 (1082)
++++|+. ..+.+|.++..++...+....+ +..+.|.. +.+++++..+.+.-|.+.
T Consensus 220 WlvCGgG-p~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 220 WLVCGGG-PKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEecCC-CceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeec
Confidence 7777654 5689999999999888876654 66677754 467777777788888764
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.1e-15 Score=160.26 Aligned_cols=246 Identities=15% Similarity=0.213 Sum_probs=184.7
Q ss_pred CCCCccEEEeecCCCeEEEee-CCeEEEEecC--------CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415 785 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 855 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~--------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 855 (1082)
|...|+.++|.+-...|++++ +|.|.+|+++ ..+++.++++|.++|.|+++++ .+..+++|+.||+|+.|
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCW 371 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeee
Confidence 788899999999999999998 7999999993 2367889999999999999999 99999999999999999
Q ss_pred ecccc----------eeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcE
Q 001415 856 NVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 925 (1082)
Q Consensus 856 d~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 925 (1082)
++... .....+.||.+.|+.+++|+....|++++.||+++.|+...... ........+ +....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~----g~Pls 444 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEH----GYPLS 444 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCcccc----CCcce
Confidence 66421 24467889999999999999999999999999999999877443 111111111 22355
Q ss_pred EEEcCCC-cEEEE-EecCeEEEEEccCcceeeeeccCCC-----CcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415 926 VQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRES-----SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 998 (1082)
Q Consensus 926 ~~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-----~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~ 998 (1082)
+.|-... ...++ ..-+.--+++...+..+..+....- ...+..+.+.|.+.+.+++.+|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 5554332 11222 1223333444444444444432211 245778889999999999999999999999999998
Q ss_pred eeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 999 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 999 ~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
.... .+.+...++++.|+ |-+|++++.||.+++|.+....
T Consensus 525 ~s~~----------a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 525 HSMV----------AHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred hhee----------eccceecceeecCC-CceEEeecCCceeehhhccchh
Confidence 7654 22244557888884 8899999999999999986654
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.4e-15 Score=154.47 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=152.9
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceee
Q 001415 831 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 910 (1082)
Q Consensus 831 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 910 (1082)
.+++|+. ++..|++|+.||.+|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+++++......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7799999 89999999999999999988888888888899999999999999999999999 7999999997432211
Q ss_pred eccCCCCCCCCCCcEEEEcCCC---cE-EEE-E-ecCeEEEEEccCcce---eeeeccCCCCcceeEEEEcCCCceEEEe
Q 001415 911 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV-V-HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 981 (1082)
Q Consensus 911 ~~~~~~~~~~~~v~~~~fspdg---~~-l~~-~-~d~~i~iwd~~~~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~t~ 981 (1082)
.+.+.. .....+.|+.|+ .+ +++ . .-+.|..||+..... .+....-.-...|++++.|+||+++|.|
T Consensus 224 -t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 111111 456788999887 33 333 2 335666666533221 1111111113579999999999999999
Q ss_pred ecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 982 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 982 s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+.||.|.|++..+.+.+..++ .. |...++.+.|+| |.+.+++.+.|.+..|..+.-..
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~a---H~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EA---HLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hh---heeeeeeEEEcC-CcCcccccccCCceeEEEEeecc
Confidence 999999999999888886554 33 334667999999 68899999999999998887633
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=8.8e-15 Score=142.74 Aligned_cols=213 Identities=15% Similarity=0.185 Sum_probs=165.1
Q ss_pred CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC-
Q 001415 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN- 498 (1082)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~- 498 (1082)
..+|+|.||++|+..+|++-....|.||.....+......++..|...|+.+.|+|... .|++|+.|..-+||....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 45999999999999999999999999999998886777779999999999999999998 699999999999999843
Q ss_pred C--ceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccc
Q 001415 499 G--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1082)
Q Consensus 499 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~ 576 (1082)
+ ++.-.+..+....+++.|+|.+ +.+++|+..+.|.+|-++....=........++ ...
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-----------------rSt 148 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-----------------RST 148 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCcc-----------------ccc
Confidence 3 3344556688999999998877 589999999999999776533221111111111 125
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECC-----C-------------cceEEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001415 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1082)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~ 638 (1082)
+.+++|+|++-.+++|+.|+..||+..- + |+++..+.. ....+..+.|+|+|..|+-.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecC
Confidence 6677777777789999999999998641 1 223333332 2347899999999999999999
Q ss_pred CCcEEEEEecCCcccee
Q 001415 639 DNGIKILATSDGIRLLR 655 (1082)
Q Consensus 639 dg~i~iwd~~~~~~~~~ 655 (1082)
|+.+.+-|.....+...
T Consensus 227 ds~v~~~da~~p~~~v~ 243 (361)
T KOG1523|consen 227 DSTVSFVDAAGPSERVQ 243 (361)
T ss_pred CCceEEeecCCCchhcc
Confidence 99999999876643333
No 207
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=2.9e-12 Score=144.87 Aligned_cols=198 Identities=14% Similarity=0.208 Sum_probs=152.7
Q ss_pred CCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCC---ceeEEEEecCCCeE
Q 001415 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 435 (1082)
Q Consensus 359 ~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 435 (1082)
+.|....+.-+.+ .++.++.+..+.|||+..+..+.. +...... ...-+-++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~------------------i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK------------------IQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh------------------cCCCceEEEEeEEEEeccCcEEEE
Confidence 3344455666666 488889999999999987766542 0111111 12224567788899
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE-EeecCCcCeEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYS 514 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~ 514 (1082)
++|+.-+.|.+|+........ .+.||.+.|.++.|+.||. ++++.|+|.++|+|++++++... +.-+|..+|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999998332221 5889999999999999999 89999999999999999998876 77789999999
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 594 (1082)
++|++. .+++++.|-+.++|+...... ..+.+|..+.+..++.++.....++++.
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGN 278 (967)
T ss_pred EEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEeecc
Confidence 999764 799999999999996643211 1445566667777777777778999999
Q ss_pred CCeEEEEECCC
Q 001415 595 DFSIKFWDMDS 605 (1082)
Q Consensus 595 dg~i~iwd~~~ 605 (1082)
|+.+++|++..
T Consensus 279 Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 279 DSTLKLWDLNG 289 (967)
T ss_pred Ccchhhhhhhc
Confidence 99999998754
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=1.8e-14 Score=138.30 Aligned_cols=249 Identities=16% Similarity=0.249 Sum_probs=181.9
Q ss_pred eecCCCCCceEEEEecCCC----eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEE
Q 001415 353 RTLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~----~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1082)
..+.|.-+++.+.|.||.+ .|||+. +..+++|.+...+..... ...+....-..+.+++++..|
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDW 158 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDW 158 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccc
Confidence 3467999999999999983 357654 568999999743221110 001111123466789999999
Q ss_pred ec-CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe--
Q 001415 429 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 505 (1082)
Q Consensus 429 sp-dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 505 (1082)
+. |-++|.+++-|-+..|||++++..-.....+-.|...|..++|..++.. ++|+.|.||++|++|++..+.-..+
T Consensus 159 ne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 159 NEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEec
Confidence 98 8899999999999999999997442223357899999999999998777 8999999999999999875543332
Q ss_pred -ecCCcCeEEEeeeecCCceEEEEecCCC-cEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415 506 -EGHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
.....+...++|+.. +-+++++-..|. .|.+-|++... ....+..|...|..++|.|...
T Consensus 238 ~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~---------------- 300 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS---------------- 300 (364)
T ss_pred CCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC----------------
Confidence 222456777888654 346788777664 58899998754 4457888888888888888765
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcce------EEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001415 583 DTTKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1082)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~ 638 (1082)
..+.++|.|..+.+||+.+.-. +..+. ...+|..+.|++ .+.+++++..
T Consensus 301 ----~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 301 ----SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ----ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence 3789999999999999975322 22222 223688999997 6778887764
No 209
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.64 E-value=3.9e-12 Score=143.91 Aligned_cols=150 Identities=17% Similarity=0.294 Sum_probs=123.7
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1082)
+-++++.-| +++|+.-+.|++|+........ .+.+|.+.|.++.||-||+++|+.+.|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666664 9999999999999987222111 28899999999999999999999999999
Q ss_pred EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc-CeEEEeeeecCC
Q 001415 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-PVYSVCPHHKEN 522 (1082)
Q Consensus 444 v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 522 (1082)
+++|++++.+.... +.-+|+..|+.+.|.|+ .++|++.|.+.++|+ ..++.+..+.+|.+ .+..++..+..
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~~~- 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPIGV- 270 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcCCc-
Confidence 99999999886652 56689999999999988 389999999999997 55666778888864 47777765433
Q ss_pred ceEEEEecCCCcEEEEecCC
Q 001415 523 IQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 523 ~~~l~s~~~dg~i~iwd~~~ 542 (1082)
..+++++.|+.+++|++..
T Consensus 271 -~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 271 -IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -eEEEeeccCcchhhhhhhc
Confidence 7899999999999998754
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.1e-15 Score=151.15 Aligned_cols=199 Identities=16% Similarity=0.202 Sum_probs=159.4
Q ss_pred cEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecc
Q 001415 790 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 868 (1082)
Q Consensus 790 ~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 868 (1082)
..++|+.+|..+++++ ||++|+|+..+...+.....|..+|.++.||| |+++|++-+.| ..+||++.+|-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999888888888888999999999999 99999999999 999999999977766552
Q ss_pred --cccCEEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec
Q 001415 869 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE 940 (1082)
Q Consensus 869 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d 940 (1082)
-.-....+.|+.|+ ..++....-+.|+.|++..+... ..++...... -...|++++.|+||+++|. +.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhhhh-ccCcceeEEEcCCCcEEEEeccC
Confidence 22345667888777 33444455567888887765432 1111111000 0146899999999999999 589
Q ss_pred CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415 941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~ 994 (1082)
|.|.|++..+.+++.-.+ +.|...|+.++|+||.+++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999988877655 58999999999999999999999999999887765
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.8e-14 Score=161.75 Aligned_cols=221 Identities=13% Similarity=0.139 Sum_probs=143.9
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcC--CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.+..|...+.+++|||||++++.++.. +..|++||+.+++..... .+.+| ..+++|||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wSP 257 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFSP 257 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeECC
Confidence 455688899999999999974444332 246999999887643210 12233 34689999
Q ss_pred CCCeEEEEe-CCCeEEEE--EccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ceeEEee
Q 001415 431 DGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE 506 (1082)
Q Consensus 431 dg~~las~~-~d~~v~iw--d~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~ 506 (1082)
||++|++++ .+|.+.|| |+.++.. . .+..|...+....|+|||+. +++++..++..+||++... .....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-
Confidence 999999875 57766655 5555543 2 35667778889999999995 3444556788899987542 223333
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~ 586 (1082)
.+.+ ....|+| +|++|+..+.++ +.+||+.++........ ..... ..|+|++
T Consensus 332 ~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~---------------------~~~sPdG 383 (429)
T PRK01742 332 GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDES---------------------PSISPNG 383 (429)
T ss_pred cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCC---------------------ceECCCC
Confidence 3443 3455654 556887777665 55589876543321111 11122 3456666
Q ss_pred CEEEEEeCCCeEEEEEC--CCcceEEEEecCCCCCCcCeEEEcCC
Q 001415 587 NRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 629 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~d 629 (1082)
+.++.++.++.+.+|++ .+|.....+..+.. .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 68888888888888875 35777777765443 5778889873
No 212
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.63 E-value=3.7e-11 Score=123.51 Aligned_cols=435 Identities=11% Similarity=0.088 Sum_probs=233.3
Q ss_pred EecC--CCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-----
Q 001415 366 FHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA----- 438 (1082)
Q Consensus 366 ~spd--g~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~----- 438 (1082)
..|| |.++++++..| +..+++.+|+..+ +..|-+-|+.-.|+|||+.+|..
T Consensus 44 l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ 101 (668)
T COG4946 44 LNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLG 101 (668)
T ss_pred cCCcccCcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEec
Confidence 4454 56677777654 3334455665544 56788899999999999999972
Q ss_pred --eCCCeEEEEEccCCceeeEEEEeeccccCeeE-EEecCCCCceEEEEEeCCCcEE----EEEccC-CceeEEeecCCc
Q 001415 439 --YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-IAFSHPNKQLCVITCGDDKTIK----VWDATN-GAKQYIFEGHEA 510 (1082)
Q Consensus 439 --~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~-l~fs~dg~~~~l~s~s~d~~i~----vwd~~~-~~~~~~~~~h~~ 510 (1082)
...+.+.+.+.+.|+..+. ++-| ...+. .-|+|||. ++++...-.-.. ++.+.. |.....+ .-+
T Consensus 102 ss~~taDly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlG 173 (668)
T COG4946 102 SSLQTADLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLG 173 (668)
T ss_pred CCCccccEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCC
Confidence 2334578888888875442 3333 33344 45999999 677664322222 222221 1111111 223
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc--ccceeEEEecCCCCE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR--KRSLGVVQFDTTKNR 588 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~--~~~i~~~~~~~~~~~ 588 (1082)
+.+.+.+ .+| .++.|-..-.+--|.--.+... -.+-.+.++.+.+...- .+.+.+--+- .++.
T Consensus 174 pathiv~---~dg-~ivigRntydLP~WK~YkGGtr----------GklWis~d~g~tFeK~vdl~~~vS~PmIV-~~Rv 238 (668)
T COG4946 174 PATHIVI---KDG-IIVIGRNTYDLPHWKGYKGGTR----------GKLWISSDGGKTFEKFVDLDGNVSSPMIV-GERV 238 (668)
T ss_pred ceeeEEE---eCC-EEEEccCcccCcccccccCCcc----------ceEEEEecCCcceeeeeecCCCcCCceEE-cceE
Confidence 3344332 222 3333322222222211100000 00111122211111000 0000000000 0011
Q ss_pred EEEEeCCCeEEEE--ECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecc-----ccc
Q 001415 589 FLAAGDDFSIKFW--DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE-----NLA 661 (1082)
Q Consensus 589 l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~ 661 (1082)
.+....+|.=.+| |+.. +-++ .|.....-.+=..+.||+.++.. ..|.|.+||..+..-....+. ...
T Consensus 239 YFlsD~eG~GnlYSvdldG-kDlr---rHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k 313 (668)
T COG4946 239 YFLSDHEGVGNLYSVDLDG-KDLR---RHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKK 313 (668)
T ss_pred EEEecccCccceEEeccCC-chhh---hcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccc
Confidence 1222333333333 3332 2221 22222222333456788887754 468899999887622111111 001
Q ss_pred ccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCC
Q 001415 662 YDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 741 (1082)
Q Consensus 662 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 741 (1082)
.........| ..-....+|.+++..+. |...+.+....- .+.+ ++...|.-..+..+++.++.+..||
T Consensus 314 ~~k~~~psky--ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~------~iqv---~~~~~VrY~r~~~~~e~~vigt~dg 381 (668)
T COG4946 314 QPKFVNPSKY--LEDFAVVNGDYIALVSR-GKAFIMRPWDGY------SIQV---GKKGGVRYRRIQVDPEGDVIGTNDG 381 (668)
T ss_pred cccccCHHHh--hhhhccCCCcEEEEEec-CcEEEECCCCCe------eEEc---CCCCceEEEEEccCCcceEEeccCC
Confidence 1111001111 01112446777776666 545444433211 1111 1556677777888888888888887
Q ss_pred -eEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCCee
Q 001415 742 -IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKT 819 (1082)
Q Consensus 742 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~~~ 819 (1082)
.+.+++.. +++..... +.-+.|.++..++||++++++.+ ..|.+.|++++..
T Consensus 382 D~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 382 DKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred ceEEEEecC----------------------CceEEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 77777543 34332221 14577999999999999999986 7899999999988
Q ss_pred EEEECCCCCCeeEEEEecCCCcEEEEEeCCC----cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeC
Q 001415 820 MATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 890 (1082)
Q Consensus 820 ~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~ 890 (1082)
...-+...+-|+.++|+| +++++|-+--+| .|+++|+.+++....-. ..+.=.+-+|.||+++|..-+.
T Consensus 436 ~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 436 RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 777777778899999999 999999887665 78999999888654433 3333456789999999876543
No 213
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=1e-13 Score=133.26 Aligned_cols=288 Identities=16% Similarity=0.187 Sum_probs=199.8
Q ss_pred ceeEEEEec---CCCeEEEEeC----CCeEEEEEcc--CCceeeEEEEeeccccCeeEEEecCCCCc---eEEEEEeCCC
Q 001415 422 SVNRVIWSP---DGSLFGVAYS----RHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQ---LCVITCGDDK 489 (1082)
Q Consensus 422 ~V~~l~~sp---dg~~las~~~----d~~v~iwd~~--~~~~~~~~~~~~~h~~~V~~l~fs~dg~~---~~l~s~s~d~ 489 (1082)
.+.++.||. .+.+||.|+. .+.|.|-.+. +++.+... . ..|.-+++.+.|.|+... -+|||++ .
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a-~-fd~~YP~tK~~wiPd~~g~~pdlLATs~--D 121 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA-N-FDHPYPVTKLMWIPDSKGVYPDLLATSS--D 121 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC-C-CCCCCCccceEecCCccccCcchhhccc--C
Confidence 677788884 3457888873 3566665543 44433321 1 368899999999998741 1466654 4
Q ss_pred cEEEEEccC--Ccee--EEe-----ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCc---eeeecCCCCceE
Q 001415 490 TIKVWDATN--GAKQ--YIF-----EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCT 557 (1082)
Q Consensus 490 ~i~vwd~~~--~~~~--~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~ 557 (1082)
.+|+|.+.. ++.. ..+ ..+..++++..|.... -++|.+++-|-+..+||++++.. ...+-.|...|.
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 799999873 2211 111 2356788988887543 37999999999999999998633 446677888999
Q ss_pred EEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC-CCCcCeEEEcC-CCCEEEE
Q 001415 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNK-DGCLLAV 635 (1082)
Q Consensus 558 ~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~-dg~~l~~ 635 (1082)
.++|..++. +.|++.|.||.+|++|++..+--..+-.... ..+...++|++ |-+++|+
T Consensus 201 DIaf~~~s~--------------------~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT 260 (364)
T KOG0290|consen 201 DIAFLKGSR--------------------DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT 260 (364)
T ss_pred EEEeccCcc--------------------ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhh
Confidence 999988665 3689999999999999998765544433222 45678899988 5567776
Q ss_pred EEC-CCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccccccc
Q 001415 636 STN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 714 (1082)
Q Consensus 636 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 714 (1082)
-.. ...|.|.|++.....+..+++|...+. .++|. ......+.+++.|..+.+||+..........++-.-
T Consensus 261 f~~dS~~V~iLDiR~P~tpva~L~~H~a~VN--gIaWa------PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay 332 (364)
T KOG0290|consen 261 FAMDSNKVVILDIRVPCTPVARLRNHQASVN--GIAWA------PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY 332 (364)
T ss_pred hhcCCceEEEEEecCCCcceehhhcCccccc--ceEec------CCCCceeeecCCcceEEEEecccccccCCCCchhhh
Confidence 544 456999999998888999999998887 66662 234567889999999999999876542221111111
Q ss_pred CcccccceeEEEEccCCceeeecccCCeEE
Q 001415 715 ENLRATKISRLIFTNSGNAILALASNAIHL 744 (1082)
Q Consensus 715 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 744 (1082)
...+.|..+.|++...-.++...+..+.
T Consensus 333 --~a~~EVNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 333 --TAGGEVNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred --hccceeeeeeecccCCCEEEEEecCeee
Confidence 1567899999997554344444443433
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=6.1e-13 Score=144.99 Aligned_cols=326 Identities=10% Similarity=0.113 Sum_probs=197.7
Q ss_pred EEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001415 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 604 (1082)
Q Consensus 525 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 604 (1082)
++++-..++.|.+.|..+.+....+.........+.+++||+ ++++++.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence 445667789999999998777777665544434455666665 78888899999999999
Q ss_pred CcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCC
Q 001415 605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK 683 (1082)
Q Consensus 605 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 683 (1082)
+++.+..+..... ..++++++||++++++. ..+.+.++|..+. +.++.+.......
T Consensus 67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~------------------- 123 (369)
T PF02239_consen 67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV------------------- 123 (369)
T ss_dssp SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence 9999999876543 57899999999998775 6899999998877 4444332211110
Q ss_pred ceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeeccc-CCeEEEeeccccccCCCCCcccc
Q 001415 684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATAS 762 (1082)
Q Consensus 684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~ 762 (1082)
.....++.++..++....++..-. .+.+.+-|.....
T Consensus 124 --------------------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~---------- 161 (369)
T PF02239_consen 124 --------------------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK---------- 161 (369)
T ss_dssp --------------------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------
T ss_pred --------------------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------
Confidence 002345566666777764444433 4666655543210
Q ss_pred cCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCCCeeEEEECC----CCCCeeEE---
Q 001415 763 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP----PPPAATFL--- 833 (1082)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----~~~~v~~l--- 833 (1082)
. .....+. .........|+|++++++++. .+.|.++|..+++.+..+.. |......+
T Consensus 162 ---------~--~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 162 ---------N--LKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp ---------C--EEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred ---------c--cceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 0 0000000 234566789999999988775 57899999999888776542 22222222
Q ss_pred ----EEecC-CCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEE----eCCCcEEEEEcCCccc
Q 001415 834 ----AFHPQ-DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS----GADSQLCVWSSDGWEK 904 (1082)
Q Consensus 834 ----~~sp~-~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~----s~Dg~i~vwd~~~~~~ 904 (1082)
.|... .+...++.-....+.+||..+.+.++++....++ .-+..+||++++... ...++|.++|.++.+.
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 12110 1222222222346678899999999999987777 778889999999987 4558899999998532
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE---ecCeEEEEEccCcceeeeec
Q 001415 905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWV 958 (1082)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~---~d~~i~iwd~~~~~~~~~~~ 958 (1082)
.. .+....+ ..+..+.|++||+++..+ .++.|.+||..+.+.+..+.
T Consensus 307 ~~--~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 307 VK--TITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eE--EEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 11 1111111 236899999999988773 34489999999999988765
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.2e-13 Score=156.49 Aligned_cols=225 Identities=13% Similarity=0.132 Sum_probs=148.6
Q ss_pred CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceee
Q 001415 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 456 (1082)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~ 456 (1082)
+..|.+||....... .+..|...+.+.+|||||++||.++.+ ..|.+||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998665432 256778899999999999999988654 469999998876432
Q ss_pred EEEEeeccccCeeEEEecCCCCceEEEE-EeCCCcEEEE--EccCCceeEEeecCCcCeEEEeeeecCCceEEEE-ecCC
Q 001415 457 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS-TALD 532 (1082)
Q Consensus 457 ~~~~~~~h~~~V~~l~fs~dg~~~~l~s-~s~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d 532 (1082)
...+.+| ...++|+|||+. |+. .+.+|.+.|| |+.++. ...+..+...+....|++++ ..|+. ...+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233444 446899999994 554 4567876655 555554 45566677777888887654 55554 4467
Q ss_pred CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001415 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1082)
Q Consensus 533 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1082)
+...+|+++..........+.. ....|+|+|++++..+.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 8889998754322111111110 1244666666887777665 556999888765332
Q ss_pred ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec--CCccceeecccccc
Q 001415 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY 662 (1082)
Q Consensus 613 ~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 662 (1082)
... ....+.|+|||++|+.++.++...+|++. ++ ...+.+..+..
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g 416 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG 416 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence 221 23568899999999999999998888764 34 44555554443
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2e-13 Score=135.33 Aligned_cols=265 Identities=16% Similarity=0.196 Sum_probs=175.4
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCeEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 436 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 436 (1082)
...+..++|++.=-. +|++..|-.|+|||-....... +-..-...|+|++|-| .++-||
T Consensus 98 ~~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhhh-hhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 445778889885442 7788999999999976522111 1223345899999999 556788
Q ss_pred EEeCCCeEEEEEccCCceee-----------EEEEeeccccCeeEEEecCCCCceEEEEEe-CCCcEEEEEccCCceeEE
Q 001415 437 VAYSRHIVQIYSYHGGDEVR-----------QHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYI 504 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~~i~vwd~~~~~~~~~ 504 (1082)
+|+..| |.||......... +...-.|| .+|+++.|.+||. .+++++ .|..|.|||+.++..+..
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887765 9999875321111 12233455 6899999999999 678777 456799999999988766
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc-ccceeEEEec
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-KRSLGVVQFD 583 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~-~~~i~~~~~~ 583 (1082)
.....+.+.-+.|+|+. .+|+++.-|+..++|.....-.........+.|...+|+|+|+.++.... ...+.++.|+
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 54456778888997665 69999999999999966554444444445558999999999986655443 3456666666
Q ss_pred CCCCEEE-EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc--------EEEEEecCC
Q 001415 584 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--------IKILATSDG 650 (1082)
Q Consensus 584 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~--------i~iwd~~~~ 650 (1082)
.....+. .++....+-+-|+..-.....-.. -..++.+++|.|.|.+|++....+. |.+||.+..
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCccc--ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 5443333 333333334444432111110000 1235789999999999998765443 556665544
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=7.9e-13 Score=132.01 Aligned_cols=238 Identities=16% Similarity=0.200 Sum_probs=175.6
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1082)
...+..+.|..|.. +|..|+.||. ++++.+.-..... .....-.|-.+-||. .++|.
T Consensus 5 ~~ti~~~~~Nqd~~-~lsvGs~~Gy-k~~~~~~~~k~~~-------------------~~~~~~~IvEmLFSS--SLvai 61 (391)
T KOG2110|consen 5 KPTINFIGFNQDST-LLSVGSKDGY-KIFSCSPFEKCFS-------------------KDTEGVSIVEMLFSS--SLVAI 61 (391)
T ss_pred Ccceeeeeecccee-EEEccCCCce-eEEecCchHHhhc-------------------ccCCCeEEEEeeccc--ceeEE
Confidence 34567777999998 6999998875 4555544322110 112233555666664 46666
Q ss_pred EeCC--CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC---CcCe
Q 001415 438 AYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPV 512 (1082)
Q Consensus 438 ~~~d--~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h---~~~v 512 (1082)
.+.+ ..+++++.+.+..++.. . ....|.++.+..+ .|+.+=.+ .|.|+|+++-+.++++... ...+
T Consensus 62 V~~~qpr~Lkv~~~Kk~~~ICe~---~-fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 62 VSIKQPRKLKVVHFKKKTTICEI---F-FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred EecCCCceEEEEEcccCceEEEE---e-cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 6554 35999999988877632 2 3457999998754 34444433 4999999999999988654 3334
Q ss_pred EEEeeeecCCceEEEEec--CCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 513 YSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
. +++++.++.+++.-+ ..|.|.+||..+......+..|.+.+.+++|+++|. .++
T Consensus 133 ~--AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~---------------------llA 189 (391)
T KOG2110|consen 133 C--ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT---------------------LLA 189 (391)
T ss_pred E--eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC---------------------EEE
Confidence 4 455556556777654 368899999999888888888888888888877776 899
Q ss_pred EEeCCCe-EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 591 AAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 591 ~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
++++.|+ |||+.+.+|+.+..++.......|.+++|+|++++|++.++.++|.++.+...
T Consensus 190 TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999887 79999999999999986655567899999999999999999999999988654
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=3.3e-13 Score=153.92 Aligned_cols=212 Identities=11% Similarity=0.112 Sum_probs=151.6
Q ss_pred ccCCCCceeEEEEecCC-CeEEEEeCCCeEEEEEccCC----ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc
Q 001415 416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~iwd~~~~----~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~ 490 (1082)
+..|...|..++.+++. .++++|+.||+|++||...- ...+...++......+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 78899999999998855 99999999999999998632 22334445554577899999999999 6888899999
Q ss_pred EEEEEccC--Cc-----eeEEeecC-CcCeEEE-eeeecCCceEEEEecCCCcEEEEecCCCCceeeec--CCCCceEEE
Q 001415 491 IKVWDATN--GA-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTM 559 (1082)
Q Consensus 491 i~vwd~~~--~~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~ 559 (1082)
|++.++.. .. +.+....+ .+.+.++ ++........++.+..-+.|..||.+......... ...+
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG----- 1196 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG----- 1196 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-----
Confidence 99999875 21 22222222 2344444 33332222478888889999999998755444322 2233
Q ss_pred EEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC---CCEEEEE
Q 001415 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVS 636 (1082)
Q Consensus 560 ~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d---g~~l~~~ 636 (1082)
.+++++.+|.+++++.|...|.+.+||++-+.++..+..... .++..+..+|- ....+++
T Consensus 1197 ----------------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1197 ----------------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred ----------------ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEe
Confidence 445555555666999999999999999999999988876554 56777777762 2455544
Q ss_pred E--CCCcEEEEEecCCc
Q 001415 637 T--NDNGIKILATSDGI 651 (1082)
Q Consensus 637 ~--~dg~i~iwd~~~~~ 651 (1082)
+ ..+.|.+|++.+|.
T Consensus 1260 ~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred cccCCCceeeeecccCc
Confidence 4 46789999999883
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=4.8e-12 Score=138.04 Aligned_cols=328 Identities=18% Similarity=0.216 Sum_probs=189.7
Q ss_pred EEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC
Q 001415 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 452 (1082)
Q Consensus 373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~ 452 (1082)
++++-..+|.|.|.|..+.+.+.+ +......-..++|+|||+++.+++.||.|.++|+.++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~-------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVAR-------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEE-------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCCCeEEEE-------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 456777899999999999888875 2222223345789999999999999999999999999
Q ss_pred ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecC-------CcCeEEEeeeecCCceE
Q 001415 453 DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-------EAPVYSVCPHHKENIQF 525 (1082)
Q Consensus 453 ~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~ 525 (1082)
+.+.. +.. .....++++|+||+. ++++...++.+.++|.++.+.++.+... ..++.++..++... .+
T Consensus 69 ~~v~~---i~~-G~~~~~i~~s~DG~~-~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~f 142 (369)
T PF02239_consen 69 KVVAT---IKV-GGNPRGIAVSPDGKY-VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EF 142 (369)
T ss_dssp SEEEE---EE--SSEEEEEEE--TTTE-EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EE
T ss_pred cEEEE---Eec-CCCcceEEEcCCCCE-EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EE
Confidence 97773 433 234678999999995 4455567899999999999999887643 23566665544432 35
Q ss_pred EEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE-eCCCeEEEEEC
Q 001415 526 IFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDM 603 (1082)
Q Consensus 526 l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~ 603 (1082)
+++.-..+.|-+-|........ ......... ....|+|++++++++ ..++.|-++|.
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~---------------------~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP---------------------HDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEEEE--TTE---------------------EEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred EEEEccCCeEEEEEeccccccceeeecccccc---------------------cccccCcccceeeecccccceeEEEee
Confidence 5555555777777766543322 111112222 234555555576554 56778999998
Q ss_pred CCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCC
Q 001415 604 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK 683 (1082)
Q Consensus 604 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 683 (1082)
.+++.+..+.......+..
T Consensus 202 ~~~k~v~~i~~g~~p~~~~------------------------------------------------------------- 220 (369)
T PF02239_consen 202 KTGKLVALIDTGKKPHPGP------------------------------------------------------------- 220 (369)
T ss_dssp TTTEEEEEEE-SSSBEETT-------------------------------------------------------------
T ss_pred ccceEEEEeeccccccccc-------------------------------------------------------------
Confidence 8776655443211100000
Q ss_pred ceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccccc
Q 001415 684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 763 (1082)
Q Consensus 684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 763 (1082)
...+ .+|... .+|..
T Consensus 221 --------------------------------------~~~~-php~~g-----------~vw~~--------------- 235 (369)
T PF02239_consen 221 --------------------------------------GANF-PHPGFG-----------PVWAT--------------- 235 (369)
T ss_dssp --------------------------------------EEEE-EETTTE-----------EEEEE---------------
T ss_pred --------------------------------------cccc-cCCCcc-----------eEEee---------------
Confidence 0000 000000 00100
Q ss_pred CccccCCCCcceeecccCCCCCCCCccEEEeecCCCeE-EEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcE
Q 001415 764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 842 (1082)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 842 (1082)
+..+... ...+.+.+.+||..+.+.++++...... .-+..+| ++++
T Consensus 236 -------------------------------~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~ 282 (369)
T PF02239_consen 236 -------------------------------SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRY 282 (369)
T ss_dssp -------------------------------EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SE
T ss_pred -------------------------------ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCcc
Confidence 0011111 1122344557777888888888766555 7788899 7888
Q ss_pred EEEE----eCCCcEEEEecccceeeeeecccc-cCEEEEEEeCCCCEEEEEeCC--CcEEEEEcCCcccc
Q 001415 843 IAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQ 905 (1082)
Q Consensus 843 lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~ 905 (1082)
+.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..+ +.|.+||..+.+..
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 8877 455899999999998877775333 358899999999976655443 36999999996543
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-13 Score=155.50 Aligned_cols=269 Identities=14% Similarity=0.157 Sum_probs=178.2
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
+.++..|...|..++.+++..-++++||.||+|++||...-..-.. .++ ..-.+......+.++.+.+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-s~r-----------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-SAR-----------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-eee-----------eeEEEeccCCceEEEEecc
Confidence 4566679999999999887744799999999999999864221100 000 0001333567899999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCC--ceee--EEEEeecc-cc-CeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEE
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH-VG-GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~--~~~~--~~~~~~~h-~~-~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~ 504 (1082)
.|..+|+++.||.|++.+++-. +... +......+ .+ .|..-+|....+...++.+..-+.|..||+.......+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1111 11111122 22 34444555444433678888889999999988766655
Q ss_pred ee--cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC-CceEEEEEccCCCeeeecccccceeEEE
Q 001415 505 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 505 ~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
++ -..|.|++++.++.. .+++.|+..|.+.+||++-......+..+. .++..+...|-.
T Consensus 1189 lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 44 245789999986544 799999999999999998766665444322 344444433322
Q ss_pred ecCCCCEEEEE-e-CCCeEEEEECCCcceEEEEecCCCC-----------------CCcCeEEEcCCCCEEEEEECCCcE
Q 001415 582 FDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGGL-----------------PASPRIRFNKDGCLLAVSTNDNGI 642 (1082)
Q Consensus 582 ~~~~~~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~~i~~~~~s~dg~~l~~~~~dg~i 642 (1082)
+.....+++ . ..+.|.+|++.+|.+...+...... .....+.+...+..+.+|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 122234443 3 5788999999999776666433110 011223344456788999999999
Q ss_pred EEEEecCCc
Q 001415 643 KILATSDGI 651 (1082)
Q Consensus 643 ~iwd~~~~~ 651 (1082)
+.||.....
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999987663
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=9.2e-13 Score=130.70 Aligned_cols=289 Identities=12% Similarity=0.151 Sum_probs=186.2
Q ss_pred ceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccccc
Q 001415 684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 763 (1082)
Q Consensus 684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 763 (1082)
.++++..|..|++|+-.. ..+..++.. ....|++++|-|.+..-++.+..+.|.+|..+........
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~------sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~------ 178 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSV------SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN------ 178 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecch------hhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc------
Confidence 457888899999999776 222222221 4567999999999877777777788999987643211110
Q ss_pred CccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCc
Q 001415 764 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 841 (1082)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 841 (1082)
++.-....+.+ +.+.+| ..|+++.|.+||..+++++ +..|.|||.+++..+.......+.++-+.||| |+.
T Consensus 179 -~~~~s~~~~qv----l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd 251 (445)
T KOG2139|consen 179 -IRMMSTHHLQV----LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGD 251 (445)
T ss_pred -cccccccchhh----eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCC
Confidence 00000001111 223334 7899999999999999997 57799999999887766655677899999999 899
Q ss_pred EEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccccc---------------
Q 001415 842 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--------------- 906 (1082)
Q Consensus 842 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~--------------- 906 (1082)
+|.+++-|+..++|............-..+.|...+|+|+|++|..+... .=++|.+.-.+...
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeec
Confidence 99999999999999654332223333345699999999999987655432 23455543211100
Q ss_pred -ceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecC---------eEEEEEccCcceeeeeccCC-CCcceeEEEEcC--
Q 001415 907 -NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC-- 973 (1082)
Q Consensus 907 -~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~-- 973 (1082)
.....+..+.....+.+.+++|.|.|.+||+...+ .|.+||....-.+....++. .......++|+|
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~ 410 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK 410 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence 00011222222334678899999999999995332 35667765444333222110 122255667766
Q ss_pred -CCceEEEeecCCcEEEEecC
Q 001415 974 -DSQLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 974 -dg~~l~t~s~dg~v~vwd~~ 993 (1082)
+|.+|..+-..|.+.-|++.
T Consensus 411 n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCcEEEEEeccCceEeeeeE
Confidence 57777777777877777654
No 222
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.55 E-value=3.2e-14 Score=135.14 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=134.0
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---------HHHHHHHhhccCHHHHHHHhccC--ccccCcccchhh
Q 001415 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGF--TKVDDNRYSMKI 72 (1082)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~--~~~~~~~~~~~~ 72 (1082)
-+.|+.+||++||...||.++|+.+..|+|+... ...+|.+|..|+.++|++.+.++ ..++.+. .+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---EL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hH
Confidence 4678999999999999999999999999999771 56889999999999999999998 3334332 49
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccchhhhccCCC--chHHHHHHHHHHHhh
Q 001415 73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKL 150 (1082)
Q Consensus 73 ~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~ 150 (1082)
.|.|++|+++||++.+...+|+.|+|+++.|+...+++.++.|...+....++..+..+ ... ....|+++++.+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988889999998887776665333222 111 355789999988877
Q ss_pred cccCCCccccccCCCCcchHHHHHHHHHHHHHH
Q 001415 151 IEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183 (1082)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~ 183 (1082)
|-...-. -...+|..|++...+.|.
T Consensus 181 iL~~~~~--------~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 181 ILASQEH--------ESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHHhcc--------cccchHHHHHHHHHHHHH
Confidence 6442210 114488888877777663
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=8.9e-13 Score=138.51 Aligned_cols=276 Identities=13% Similarity=0.191 Sum_probs=201.4
Q ss_pred CCccccCCCCcee-eeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccc
Q 001415 674 GDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 752 (1082)
Q Consensus 674 ~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~ 752 (1082)
..+..+|||++++ +|..--.|++||+.... +.+........|.-..++.|-..++....|..|.+..
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa----- 122 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----- 122 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEcccce-------eeeeecccccceeEEEeccchhhheEeecCceeeehh-----
Confidence 3455699999975 55566699999998642 2222222334455555666666677777777776642
Q ss_pred cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee-cCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCee
Q 001415 753 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 831 (1082)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~ 831 (1082)
..|.-....+ ...-..++++ |...++++|+...|+-++++.|+-+..+....+.++
T Consensus 123 ------------------k~G~hy~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN 179 (703)
T KOG2321|consen 123 ------------------KYGRHYRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN 179 (703)
T ss_pred ------------------hcCeeeeeec-----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccce
Confidence 1222111111 1222344554 455677777788899999999999999998889999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec------cccc-----CEEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 001415 832 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSD 900 (1082)
Q Consensus 832 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 900 (1082)
++..++ -..+||+|+.+|.|..||..+...+..+. .|.+ .|+++.|+.||-.+++|..+|.|.|||+.
T Consensus 180 ~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 180 VVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred eeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 999999 78899999999999999999876666554 2333 49999999999999999999999999999
Q ss_pred CcccccceeeeccCCCCCCCCCCcEEEEcCC--CcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceE
Q 001415 901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 978 (1082)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd--g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l 978 (1082)
+.+.. +....+.. ..|..+.|.+. +..+++.....++|||-.+|+......+ ...++.+|+-|++.++
T Consensus 259 a~~pl----~~kdh~~e---~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 259 ASKPL----LVKDHGYE---LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMF 328 (703)
T ss_pred cCCce----eecccCCc---cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceE
Confidence 85432 22222222 46788888775 4566667778899999999999877764 5669999999999999
Q ss_pred EEeecCCcEEEEecCCc
Q 001415 979 YACFLDATVCVFSAANL 995 (1082)
Q Consensus 979 ~t~s~dg~v~vwd~~~~ 995 (1082)
+++.+++.+..|=+...
T Consensus 329 f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 329 FTANESSKMHTYYIPSL 345 (703)
T ss_pred EEecCCCcceeEEcccc
Confidence 99999888877766543
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=3.4e-13 Score=140.52 Aligned_cols=268 Identities=13% Similarity=0.190 Sum_probs=174.7
Q ss_pred EcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc-cccccCCCCccccCCCCceeeeccCCceeEEEecccCC
Q 001415 626 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR-TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSE 704 (1082)
Q Consensus 626 ~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 704 (1082)
++-.|.+|+..- ...+++|+.+.+......+......... .+-.| ......+++-.++++-.-|.+.+.|......
T Consensus 131 ~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdf--n~~~a~~~g~dllIGf~tGqvq~idp~~~~~ 207 (636)
T KOG2394|consen 131 QSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDF--NSFTATPKGLDLLIGFTTGQVQLIDPINFEV 207 (636)
T ss_pred ccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecc--cccccCCCCcceEEeeccCceEEecchhhHH
Confidence 334455555433 2457777776543333333222211110 01122 1122367778888888888888888765211
Q ss_pred CCccccccccCcccccceeEEEEccCCc-eeeecccCCeEEEeeccccc--cCCCCCccccc---CccccCCCCc--cee
Q 001415 705 PNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTE--RNSSGKATASV---APQLWQPPSG--IMM 776 (1082)
Q Consensus 705 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~---~~~~~~~~~~--~~~ 776 (1082)
.. .+..........++++.|-|.+. .++++-.+|.+++||..... ..+........ .+..|..... .+.
T Consensus 208 sk---lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 208 SK---LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred HH---hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 11 11111122457899999998664 56677778999999764221 11111111100 1111111100 011
Q ss_pred ecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415 777 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 855 (1082)
Q Consensus 777 ~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 855 (1082)
...+ -...|..++|||||++||+.+ ||.++|||..+.+.+..++.--+...|++||| ||++|++|++|--|.||
T Consensus 285 ~w~~----~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 285 RWHI----GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVW 359 (636)
T ss_pred eeEe----ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEE
Confidence 1111 345789999999999999998 79999999999888888887788899999999 99999999999999999
Q ss_pred ecccceeeeeecccccCEEEEEEeC-------------------------------C----C-------------CEEEE
Q 001415 856 NVRVDEVKSKLKGHSKRITGLAFSH-------------------------------A----L-------------NVLVS 887 (1082)
Q Consensus 856 d~~~~~~~~~l~~h~~~V~~l~~s~-------------------------------d----~-------------~~l~s 887 (1082)
.+...+.+..-.||.+.|..++|.| + + -++.+
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGS 439 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGS 439 (636)
T ss_pred EeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeec
Confidence 9999999999999999999999972 0 1 15788
Q ss_pred EeCCCcEEEEEcCCccc
Q 001415 888 SGADSQLCVWSSDGWEK 904 (1082)
Q Consensus 888 ~s~Dg~i~vwd~~~~~~ 904 (1082)
++.|-.+.+||+....+
T Consensus 440 VGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 440 VGQDTQLCLWDLTEDVL 456 (636)
T ss_pred ccccceEEEEecchhhc
Confidence 89999999999987544
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=143.42 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=118.5
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeee-----------eceeeeccCCCCcccccccccCCCCceeE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----------RNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1082)
.+..|+|+.|-|.++.++.++-.+|.+++||.+---.... ..+-.|.-.....|.. -..--++.|..
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~ 295 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINE 295 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccc
Confidence 3589999999998888788888899999998632110000 0000010000001111 11222458999
Q ss_pred EEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe
Q 001415 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1082)
Q Consensus 426 l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 505 (1082)
.+|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ |+++|+.|-.|.||.+..++.+..-
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEec
Confidence 9999999999999999999999999977665 4555667899999999999 8999999999999999999999999
Q ss_pred ecCCcCeEEEeee
Q 001415 506 EGHEAPVYSVCPH 518 (1082)
Q Consensus 506 ~~h~~~v~~~~~~ 518 (1082)
.||..+|..++|.
T Consensus 371 qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 371 QGHKSWVSVVAFD 383 (636)
T ss_pred cccccceeeEeec
Confidence 9999999999987
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=4e-12 Score=124.48 Aligned_cols=241 Identities=14% Similarity=0.189 Sum_probs=168.0
Q ss_pred CccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCC--CeeEEEEecCCCcEEE-EEeCC------CcEEEEecc
Q 001415 788 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIA-IGMDD------SSIQIYNVR 858 (1082)
Q Consensus 788 ~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~la-sg~~d------g~v~iwd~~ 858 (1082)
...+++|..|..-+++|.+...+||+.+..+.....+.+.+ .+..+-|- .++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence 34569999999999999998899999986544333332222 23333332 23443 44433 479999966
Q ss_pred cceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-
Q 001415 859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 937 (1082)
Q Consensus 859 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~- 937 (1082)
..+++.++. ..++|.++.+++| .|++. -++.|.||.....-.. ...+...... .++.+++=+.+..+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEcC
Confidence 677777776 6688999999865 45555 3577999999853221 2222222211 22333333334455555
Q ss_pred E-ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCc-EEEEecCCceeeeeeCCCeecCCCCCCCC
Q 001415 938 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSN 1015 (1082)
Q Consensus 938 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1015 (1082)
+ .-|+|.|-|+...+.-......+|.+.|.+++.+-+|..+||+|..|+ |||||..+|.+++.++. |...
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~-- 226 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDR-- 226 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCch--
Confidence 4 458999999876665333444589999999999999999999999998 79999999999998772 3112
Q ss_pred ceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1016 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1016 v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
....+++|+| +..+||++|+-|+|.++.+....
T Consensus 227 A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 227 ADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred heEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 2344999999 58999999999999999998765
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.8e-12 Score=134.87 Aligned_cols=259 Identities=15% Similarity=0.159 Sum_probs=176.0
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
+++-++|...-+.|..||||+|++|+|...-.|++||+..-.+-..+ .-....|.-.-+|-
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------hlDae~V~feiLsD 104 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------HLDAEVVDFEILSD 104 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------cccccceeEEEecc
Confidence 45667799999999999999999999999999999999765443221 11123455566666
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
|-..++.-..|.+|.+-.--+ .... ..+. ..-..++++.-... |+.++....|+-.+++.|+.+..+....+
T Consensus 105 D~SK~v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred chhhheEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccc
Confidence 777777777787776643222 1111 0111 11224444433332 44444456788899999999999988889
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
.++++.+++.. .+|++|+.+|.|..||.+.......+..... |.+.. .+.....++.+.|+.+|-.++
T Consensus 177 ~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~p---------g~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 177 ELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHP---------GGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred cceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCCc---------cccccCcceEEEecCCceeEE
Confidence 99999886544 5888999999999999987665544433222 11111 011223566777777777999
Q ss_pred EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC--CCEEEEEECCCcEEEEEecCC
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~dg~i~iwd~~~~ 650 (1082)
+|..+|.+.|||+++.+++..-. |+...+|..+.|.+. ++.+++ .....++|||-.+|
T Consensus 245 VGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG 304 (703)
T ss_pred eeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccC
Confidence 99999999999999988876554 444557889999774 344444 44577899998877
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.8e-12 Score=143.83 Aligned_cols=221 Identities=11% Similarity=0.065 Sum_probs=137.2
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.+..+...+.+.+|||||++|+.+.. .+..|.+|++.+|+... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 34557788999999999997554432 24579999998876443 222233455689999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeC-CCcEEEE--EccCCceeEE
Q 001415 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVW--DATNGAKQYI 504 (1082)
Q Consensus 431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~-d~~i~vw--d~~~~~~~~~ 504 (1082)
||++|+.. +.+| .|.+||+++++... +..+...+....|+|||+. |+..+. ++...|| |+.++.. ..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence 99999876 3344 58899998876433 4445567889999999994 544443 4444555 6666544 34
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCC---CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
+..+........|++ +|++|+..+.+ ..|.+||+.++.... +.. ........
T Consensus 326 lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~--------------------- 380 (429)
T PRK03629 326 ITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPS--------------------- 380 (429)
T ss_pred eecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCce---------------------
Confidence 443444455566665 44667665443 357888887654322 211 11112333
Q ss_pred ecCCCCEEEEEeCCCe---EEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 582 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
|+|||..++.++.++. +.++++. |.....+..+.+ .+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 4555557777776553 6777774 555555554333 467788876
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.4e-11 Score=129.50 Aligned_cols=550 Identities=10% Similarity=0.077 Sum_probs=304.8
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
.......|++|.....| +|+|+.||.++|-.+.+...-.. .--+...+.-.....+.||.+.|.-+.|+.+.+.|
T Consensus 12 PnnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 34566789999999885 99999999999998876432211 11111222222334689999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee-EEeecCCcCeEE
Q 001415 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYS 514 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h~~~v~~ 514 (1082)
-+...+|.|.+|-+-.|.-.... .-......|.+++|..||. .++..-.||.|.|=.++..+.- +.+++. ....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence 99999999999998877533211 1123456789999999999 5777778888877665432211 122221 1234
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCc-eEE-EEEccCCCeeeecccccceeEEEecCCCCEEEEE
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~-~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1082)
+.|+++. ..++.+-..|.+.++|....-.. ..+... |.. -.++.-+.+ +.++....-...-..|+...|+++
T Consensus 162 v~ws~D~--~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavc 235 (1189)
T KOG2041|consen 162 VLWSEDL--EQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVC 235 (1189)
T ss_pred eeecccH--HHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEE
Confidence 5665543 67777778899999987532111 111111 111 112222211 111111111122234678899999
Q ss_pred eCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccC
Q 001415 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1082)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1082)
..+|.+.+-.-.....-..+... ..+....|+++|..|++++.+..-.- +..+. .+.|
T Consensus 236 y~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n-----------------~v~F- 293 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN-----------------KVHF- 293 (1189)
T ss_pred EcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc-----------------eEEE-
Confidence 99999988755443332223221 24788999999999999886532100 00000 0111
Q ss_pred CCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccc
Q 001415 673 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 752 (1082)
Q Consensus 673 ~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~ 752 (1082)
.+|-|+.+ |+ +.. ....|++++|-..|-.++.+ -|+.|.+=++...-
T Consensus 294 -----ysp~G~i~------gt-----------------lkv----pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~y 340 (1189)
T KOG2041|consen 294 -----YSPYGHIV------GT-----------------LKV----PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEY 340 (1189)
T ss_pred -----eccchhhe------EE-----------------Eec----CCceeeeeEEcCCceEEEEE-ecceEEEEeecccc
Confidence 02222211 00 111 23445555555544333222 22333332222110
Q ss_pred ----------cCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEec-CCCeeE
Q 001415 753 ----------RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM-MTFKTM 820 (1082)
Q Consensus 753 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~-~~~~~~ 820 (1082)
+...+.......+.+||..+....... -....+++++.+--.|+.-. ++.+.-++. ++...+
T Consensus 341 kWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~ 414 (1189)
T KOG2041|consen 341 KWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRV 414 (1189)
T ss_pred eEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceeehheecccEEEEeccccCCCcchhhhhcccce
Confidence 001111222234567777665433221 22344666666554555444 355554422 222211
Q ss_pred EEECC-------CCCCeeEE--EEecCCCcEEEEEeCCCcEEEEeccccee-----------------------------
Q 001415 821 ATFMP-------PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRVDEV----------------------------- 862 (1082)
Q Consensus 821 ~~~~~-------~~~~v~~l--~~sp~~~~~lasg~~dg~v~iwd~~~~~~----------------------------- 862 (1082)
..+.- -+...+.+ .|---++..++.++.+ .+.+|.....+.
T Consensus 415 ~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l 493 (1189)
T KOG2041|consen 415 YFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTL 493 (1189)
T ss_pred EEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhcee
Confidence 11110 01111111 1111155677777765 688887632111
Q ss_pred ---eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-E
Q 001415 863 ---KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 938 (1082)
Q Consensus 863 ---~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~ 938 (1082)
..++.|..++|.+++.+ .++|..+-..|.|.-|.+...... ... +....+.+++..-+...+|+ -
T Consensus 494 ~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-----n~y----~~n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 494 EYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-----NSY----PVNPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred eccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee-----ecc----ccCchheeEeeccCcchhhhhh
Confidence 12344566788888886 678899999999999999884321 111 11146788898888888887 4
Q ss_pred ecCeEEEEEcc---CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCc
Q 001415 939 HETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 995 (1082)
Q Consensus 939 ~d~~i~iwd~~---~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~ 995 (1082)
.-|.+.+.|+. +|+.+..+.. .....|+.+.|..|...|+.--+...+.|++-.+-
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred hhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence 56777777765 4444443221 23567889999888876665555566777665443
No 230
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.48 E-value=1.4e-08 Score=123.28 Aligned_cols=539 Identities=12% Similarity=0.144 Sum_probs=288.7
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEE----EccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
..+.|.++.|-+|... ++.+..+|.|.+. +..+...-. ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999985 7778889999999 554443322 33446699999999999
Q ss_pred CeEEEEeCCCeEEEEEcc----C---------C--cee--------eEE----------------------EEeeccccC
Q 001415 433 SLFGVAYSRHIVQIYSYH----G---------G--DEV--------RQH----------------------LEIDAHVGG 467 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~----~---------~--~~~--------~~~----------------------~~~~~h~~~ 467 (1082)
..||..+.++++.+.+-. . | +.+ .+. ..+. +.+.
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999988876321 0 0 000 000 0011 3334
Q ss_pred eeEEEecCCCCceEEEEEeC------CCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC---CCcEEEE
Q 001415 468 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 538 (1082)
Q Consensus 468 V~~l~fs~dg~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw 538 (1082)
-..++|-.||. ++|..+. -+.+|||+ +.|....+-..-.+--.+++|-|++ ++|++... ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEE
Confidence 56789999999 6776653 25799999 5577655554334444556776544 67777754 2345555
Q ss_pred ecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE--EEEecCC
Q 001415 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG 616 (1082)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 616 (1082)
.-.. -....+.. .+.++ ...+..+.|++++..|+..-.|. |.+|-..+.... +.+....
T Consensus 287 ErNG-LrhgeF~l--------~~~~~---------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNG-LRHGEFTL--------RFDPE---------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCC-cEeeeEec--------CCCCC---------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 3221 11111111 11111 12344555666666777766555 999988776543 2233222
Q ss_pred CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCcee
Q 001415 617 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSK 695 (1082)
Q Consensus 617 ~~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 695 (1082)
. ..+..+.|+| +...|.+.+.+|.+..++..-.. ..+.. . +|+..-.+..-...++.
T Consensus 348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v-----~~s~~---------~-------~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV-----SRSPG---------S-------SPNDNGTVAVIDGNKLL 405 (928)
T ss_pred C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE-----EecCC---------C-------CccCceEEEEEeCCeEE
Confidence 2 2345699999 55668888887888776653210 00000 0 11112222222223555
Q ss_pred EEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcce
Q 001415 696 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 775 (1082)
Q Consensus 696 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1082)
+-.+.....+.......+. -...|.+++|++++..+++...||.+.+|.+................+ ... ..
T Consensus 406 lTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~---~~~--~~ 477 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI---SLD--SM 477 (928)
T ss_pred EecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc---ccc--cc
Confidence 5554443333332222211 346899999999998899999999999998664432210000000000 000 00
Q ss_pred eecccCCCCCCCCccEEEeecCCCeEEEeeC----CeEEEEecCCCe---eEEEECCCCCCeeEEEEecCCCcEEEEEeC
Q 001415 776 MTNDVTDSNPEEAVPCFALSKNDSYVMSASG----GKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMD 848 (1082)
Q Consensus 776 ~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasg~~ 848 (1082)
.. .........+..++|..+..+++.... ..+.+++..... ...........+..+...+ +...++.-..
T Consensus 478 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 00 000013455778888888877766653 468888874332 2333333445555566665 4444666777
Q ss_pred CCcEEEEeccccee-eeeecccccCEEEEEEeCCCC---EEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCc
Q 001415 849 DSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 924 (1082)
Q Consensus 849 dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 924 (1082)
+|.+...+...... +..+..-... ..+....+.. .++.-+..|.+.+ ++. .+. ..++
T Consensus 555 ~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~~------~la---------~~~t 615 (928)
T PF04762_consen 555 DGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSSNGRLYA---NSR------LLA---------SNCT 615 (928)
T ss_pred CCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECCCCEEEE---CCE------EEe---------cCCc
Confidence 99888766554322 1223222122 2222233332 3444444443332 221 111 3456
Q ss_pred EEEEcCCCcEEEEEecCeEEEEEccC-cceeeeeccCC----CCcceeEEEEcCCCceEEEeecCCcEEEEecCCceee
Q 001415 925 RVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRE----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 998 (1082)
Q Consensus 925 ~~~fspdg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~----h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~ 998 (1082)
++.+. +..+|.+.....+++.++.. ........ .. +...++. -.-|..|+++--...=.|..+.-|.+-
T Consensus 616 SF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~R~---VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 616 SFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERCRR---VERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred eEEEE-cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccccc---CccCCEEEEEeCCCceEEEEcCCCchh
Confidence 66663 22334446667788888871 11111111 00 0112222 235777777764445556677776653
No 231
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5.8e-14 Score=153.74 Aligned_cols=301 Identities=19% Similarity=0.219 Sum_probs=200.5
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001415 168 NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVP 247 (1082)
Q Consensus 168 ~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1082)
+-.|..|+.|+++.|+.+|++|.+.++.++||..|+|+.|...+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~------------------------------------ 1055 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLL------------------------------------ 1055 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHh------------------------------------
Confidence 45899999999999999999999999999999999999832111
Q ss_pred CCccccccCCCCcccCCcccCccCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCccccccccccccccc
Q 001415 248 TPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 327 (1082)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~~vw~~~ 327 (1082)
..+-|...++.+...++...++.....|.+.+-.|+|. |
T Consensus 1056 -------------------------~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~-------------w--- 1094 (1516)
T KOG1832|consen 1056 -------------------------EAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRS-------------W--- 1094 (1516)
T ss_pred -------------------------hcchhhhhcccchhhcCcccccccCcccchhhHhhccc-------------c---
Confidence 11112222222333333334555555555555444432 1
Q ss_pred cccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCC
Q 001415 328 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC 407 (1082)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~ 407 (1082)
...-.|+...+|++||-+.++ |++|+..|.|+++++.+|.....
T Consensus 1095 ------------------------~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s----------- 1138 (1516)
T KOG1832|consen 1095 ------------------------RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES----------- 1138 (1516)
T ss_pred ------------------------hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-----------
Confidence 022237789999999999995 99999999999999999987764
Q ss_pred CcccccccccCCCCceeEEEEecCCCeEEEEeCC--CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEE
Q 001415 408 SMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485 (1082)
Q Consensus 408 ~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d--~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~ 485 (1082)
...|..+|+.+.=|.||..+.+.+.- -...+|++.+-- ....++. .-.++.|+..-+. -+.|
T Consensus 1139 --------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~--r~~g 1202 (1516)
T KOG1832|consen 1139 --------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF--RALG 1202 (1516)
T ss_pred --------ccccccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH--HHhc
Confidence 78999999999999999988876543 357899987622 2212332 3458899877653 3334
Q ss_pred eCCCcEEEEEccCCceeEE-eec---CCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEE
Q 001415 486 GDDKTIKVWDATNGAKQYI-FEG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1082)
Q Consensus 486 s~d~~i~vwd~~~~~~~~~-~~~---h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 561 (1082)
.......+||++++..+.+ +.+ ..-.-+...|+|.. .+++- || .+||++....+..+.....
T Consensus 1203 t~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~------- 1268 (1516)
T KOG1832|consen 1203 TEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD------- 1268 (1516)
T ss_pred ccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-------
Confidence 4445788999999988766 322 11122445565544 34443 33 6899987655544332110
Q ss_pred ccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001415 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1082)
Q Consensus 562 s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~ 635 (1082)
. ..-.|+|.|..++.-++ |||++|.+++.....-.. +.+.|+..|..++.
T Consensus 1269 ~---------------~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1269 Y---------------GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYA 1318 (1516)
T ss_pred c---------------ccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhh
Confidence 0 01236777777777664 999999998877654432 56888888876654
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=8e-12 Score=141.48 Aligned_cols=222 Identities=15% Similarity=0.134 Sum_probs=133.5
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.+..+...+.+.+|||||++|+++...+ ..|.+||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 4556888999999999999755444333 359999999886543 222334567899999
Q ss_pred CCCeEEE-EeCCCeEEEEEc--cCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc--CCceeEEe
Q 001415 431 DGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQYIF 505 (1082)
Q Consensus 431 dg~~las-~~~d~~v~iwd~--~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~--~~~~~~~~ 505 (1082)
||+.||. .+.++...||.+ .++. .. .+..|.+.+....|+|||+. +++++..++...+|.+. ++.. ..+
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce-EEE
Confidence 9999885 566777666654 4443 32 35556666778899999995 23344445667777654 4443 333
Q ss_pred ecCCcCeEEEeeeecCCceEEEEecCCC---cEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415 506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
..+........|++ +|++|+..+.++ .|.+||+.++..... .. ........|+|||+
T Consensus 324 t~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~---------------- 383 (427)
T PRK02889 324 TFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGR---------------- 383 (427)
T ss_pred ecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCC----------------
Confidence 22223333456655 556777666544 599999877553322 11 11223445555554
Q ss_pred cCCCCEEEEEeCCC---eEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 583 DTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 583 ~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
.++.++.++ .+.+.+. ++.....+..+.+ .+...+|+|
T Consensus 384 -----~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 384 -----YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred -----EEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 555544322 3555565 3555554543322 456677776
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.7e-10 Score=122.01 Aligned_cols=349 Identities=15% Similarity=0.223 Sum_probs=214.2
Q ss_pred CCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCC
Q 001415 595 DFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKN 673 (1082)
Q Consensus 595 dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1082)
.-.+.+|+...... ...+.......++...+++++|++++.+. +..++|++..++...+..
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~----------------- 71 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCV----------------- 71 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEe-----------------
Confidence 34577887655332 23332221222456788999998877654 577888887665211110
Q ss_pred CCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeecccccc
Q 001415 674 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 753 (1082)
Q Consensus 674 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 753 (1082)
....+..+.|+|.|.++.+--.-. +|
T Consensus 72 --------------------------------------------~~~~~~~L~fSP~g~yL~T~e~~~---i~------- 97 (566)
T KOG2315|consen 72 --------------------------------------------ELKKTYDLLFSPKGNYLLTWEPWA---IY------- 97 (566)
T ss_pred --------------------------------------------ccceeeeeeecccccccccccccc---cc-------
Confidence 111455566777666554321100 00
Q ss_pred CCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEE
Q 001415 754 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 833 (1082)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l 833 (1082)
.........+++|+.+++......... .... .+..|+.|..+.|--..+.+.+|++.+.+.+..- -|...++.+
T Consensus 98 --~~~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f 171 (566)
T KOG2315|consen 98 --GPKNASNPNVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK-LSVSGITML 171 (566)
T ss_pred --cCCCCCCCceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceeee-eeccceeeE
Confidence 000011234566677664433221111 1222 5889999998887777889999999875443322 256789999
Q ss_pred EEecCCC--cEEEE-----EeCCCcEEEEecccceeeeeec---ccccCEEEEEEeCCCCE---EEEEeCC---------
Q 001415 834 AFHPQDN--NIIAI-----GMDDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNV---LVSSGAD--------- 891 (1082)
Q Consensus 834 ~~sp~~~--~~las-----g~~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~---l~s~s~D--------- 891 (1082)
.+|| ++ ..+|+ ++.-+.|+||.+.-...-..+. -....=..+.|.+-|.- |++..-|
T Consensus 172 ~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 172 SLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred EecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcccccc
Confidence 9999 52 34443 4455689999876322111110 01112234677776653 2333333
Q ss_pred CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE---ecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415 892 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWVPRESSAPITH 968 (1082)
Q Consensus 892 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~ 968 (1082)
.++.+.++++.. ..+..... ++|.++.|+|+|+.++++ .--.+.|||++ +..+..+. .++-++
T Consensus 251 q~Lyll~t~g~s----~~V~L~k~-----GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~ 316 (566)
T KOG2315|consen 251 QTLYLLATQGES----VSVPLLKE-----GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNT 316 (566)
T ss_pred ceEEEEEecCce----EEEecCCC-----CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccc
Confidence 367788877321 22222211 678999999999988884 34689999984 55555554 567889
Q ss_pred EEEcCCCceEEEeecC---CcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEec------CCc
Q 001415 969 ATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS------DGG 1039 (1082)
Q Consensus 969 l~~s~dg~~l~t~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~------dg~ 1039 (1082)
+-|+|.|.+|+.++.+ |.+.|||+.+.+++..+. . ...+-+.|+| ||++++|+.. |+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-------a-----~~tt~~eW~P-dGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-------A-----ANTTVFEWSP-DGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-------c-----CCceEEEEcC-CCcEEEEEeccccEEecCC
Confidence 9999999999988754 789999999999998776 1 2234699999 6999888764 588
Q ss_pred EEEEccCCCC
Q 001415 1040 VHVFEPLESE 1049 (1082)
Q Consensus 1040 v~vW~~~~~~ 1049 (1082)
++||++.-.-
T Consensus 384 ~KiwhytG~~ 393 (566)
T KOG2315|consen 384 IKIWHYTGSL 393 (566)
T ss_pred eEEEEecCce
Confidence 9999986543
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=4.3e-13 Score=137.34 Aligned_cols=232 Identities=15% Similarity=0.236 Sum_probs=186.4
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1082)
.-....+.|+.+|++ ++.|+..|.|..+|+.++.+..... -...|.++.|-.+.+++|+
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence 345678999999997 7778889999999999998876432 2347889999999999999
Q ss_pred EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEee
Q 001415 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1082)
Q Consensus 438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1082)
+- ...+.|||-..-+ +.+ +..| ..|..+.|-|.-- +|++++..|.++.-|+.+|+.+..+....+.+..++-
T Consensus 188 AQ-K~y~yvYD~~GtE-lHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNNGTE-LHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred hh-hceEEEecCCCcE-Eee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 84 4679999976543 442 3333 4789999999876 8999999999999999999999999888888888886
Q ss_pred eecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCe
Q 001415 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1082)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 597 (1082)
+|-+ ..+-+|...|+|.+|.....+++..+..|.++|.++++.++|. ++++.|.|..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~---------------------YMaTtG~Dr~ 316 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR---------------------YMATTGLDRK 316 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc---------------------EEeecccccc
Confidence 6544 6888999999999999998888888888888888877777766 9999999999
Q ss_pred EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1082)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd 646 (1082)
++|||++....+.++.... +...+++|..|- ++.+....+.||.
T Consensus 317 ~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkgl--LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRTPH---PASNLSLSQKGL--LALSYGDHVQIWK 360 (545)
T ss_pred eeEeeeccccccceeecCC---Cccccccccccc--eeeecCCeeeeeh
Confidence 9999999887776665422 467788887663 3344556788995
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=2.9e-10 Score=111.68 Aligned_cols=237 Identities=15% Similarity=0.211 Sum_probs=157.8
Q ss_pred ceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-e
Q 001415 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-Y 439 (1082)
Q Consensus 361 v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~ 439 (1082)
...++|..|..- +++| .|.-.+||+.+.-+...++.+ ..-.-.+..+-| -.++||.. +
T Consensus 8 ~lsvs~NQD~Sc-Fava-~~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVGG 66 (346)
T KOG2111|consen 8 TLSVSFNQDHSC-FAVA-TDTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVGG 66 (346)
T ss_pred eeEEEEccCCce-EEEE-ecCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEecC
Confidence 344899999884 5555 466688999876333221110 000011111212 23455543 3
Q ss_pred CC------CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc-CCceeEEeecCC--c
Q 001415 440 SR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--A 510 (1082)
Q Consensus 440 ~d------~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h~--~ 510 (1082)
.+ ..|.|||-...+++. ++. -..+|.++.++++- +|.. ..+.|.||... +.+.++.+.... .
T Consensus 67 g~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred CCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCCC
Confidence 22 479999955555444 332 45789999998763 3333 35789999987 566666665433 2
Q ss_pred CeEEEeeeecCCceEEEEec-CCCcEEEEecCCCCc--eeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCC
Q 001415 511 PVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~ 587 (1082)
...+++ +..+..+|+.-+ .-|.|++-|+..... ...+..|...|.+++.+.+|.
T Consensus 138 GlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------------------- 194 (346)
T KOG2111|consen 138 GLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------------------- 194 (346)
T ss_pred ceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------------------
Confidence 344443 444445566554 358899999876554 355566666666555555554
Q ss_pred EEEEEeCCCe-EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 588 RFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 588 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
.+++++..|+ |||||..+|+.+..+........|.+++|||++.+|+++++.|++.|+.+...
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 8999999887 79999999999999987766678999999999999999999999999998764
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.2e-11 Score=135.40 Aligned_cols=213 Identities=12% Similarity=0.125 Sum_probs=133.7
Q ss_pred cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC---CCeEEEEEccCCceeeEE
Q 001415 382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQH 458 (1082)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~iwd~~~~~~~~~~ 458 (1082)
.|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+|++.+++...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888887654332 3456678999999999999997653 3579999998876432
Q ss_pred EEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC-CCcE
Q 001415 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI 535 (1082)
Q Consensus 459 ~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i 535 (1082)
+....+.+..++|||||+. ++++.+.++ .|.+||+.+++... +..+...+....|+|+ |+.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD--SQNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC--CCEEEEEeCCCCCc
Confidence 2223334557899999995 333444454 48999998887654 4434456677787765 466666554 4555
Q ss_pred EEE--ecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceEE
Q 001415 536 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLT 610 (1082)
Q Consensus 536 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 610 (1082)
.+| |+.++.. ..+......... ..|+|+|++++..+. ...|.+||+.+++..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~---------------------~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQD---------------------ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 555 4443322 122222222233 344555556665443 246889999888654
Q ss_pred EEecCCCCCCcCeEEEcCCCCEEEEEECCCc---EEEEEec
Q 001415 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS 648 (1082)
Q Consensus 611 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~---i~iwd~~ 648 (1082)
.+.... ......|+|||++|+..+.++. +.++++.
T Consensus 369 ~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 369 VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 333221 2346889999999999988765 5556653
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.2e-11 Score=140.70 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=136.3
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcC--CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~--dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.+..|...+.+.+|||||++++.+... +..|.+||+.+++... +..+.+...+++|||
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFSP 257 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceECC
Confidence 455678889999999999974444332 3469999998876543 223344556789999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCCc--EEEEEccCCceeEE
Q 001415 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQYI 504 (1082)
Q Consensus 431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~~--i~vwd~~~~~~~~~ 504 (1082)
||+.|+.. +.+| .|.+||+.+++.. .+..|.......+|+|||+. ++.++ .++. |.++|+.+++...
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~~- 330 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAER- 330 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeEE-
Confidence 99988754 4455 5999999887643 35556556678999999994 55444 4555 6666766665433
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCCC---cEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
+..+.......+|+++ |++|+..+.++ .|.+||+.++... .+. +........|+|||+
T Consensus 331 lt~~g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--------------- 391 (433)
T PRK04922 331 LTFQGNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--------------- 391 (433)
T ss_pred eecCCCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC---------------
Confidence 3323334445677654 46676654332 5889998765443 222 111223345555554
Q ss_pred ecCCCCEEEEEeC---CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 582 FDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 582 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
.++..+. .+.|.++++.. .....+..+.+ .+...+|+|
T Consensus 392 ------~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 ------MVLYATREGGRGVLAAVSTDG-RVRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred ------EEEEEEecCCceEEEEEECCC-CceEEcccCCC--CCCCCccCC
Confidence 5555443 34678888754 34444433222 356667765
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.7e-10 Score=119.52 Aligned_cols=313 Identities=9% Similarity=0.170 Sum_probs=193.8
Q ss_pred EEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccc
Q 001415 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1082)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1082)
+++.+.+..++|++..++..+.+.... .+..+.|+|-|.+|.+-- .-.++...+..
T Consensus 48 lfA~~~~~~v~i~~~~~~~~~lt~~~~----~~~~L~fSP~g~yL~T~e---~~~i~~~~~~~----------------- 103 (566)
T KOG2315|consen 48 LFAYSDNQVVKVFEIATLKVVLCVELK----KTYDLLFSPKGNYLLTWE---PWAIYGPKNAS----------------- 103 (566)
T ss_pred EEEEEcCCeEEEEEccCCcEEEEeccc----eeeeeeeccccccccccc---ccccccCCCCC-----------------
Confidence 555566778999999888655444433 368899999998886521 11111111110
Q ss_pred cccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeec
Q 001415 669 ENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 748 (1082)
Q Consensus 669 ~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~ 748 (1082)
.-.+.+|++.+......+.. ....+ ....|+.|.. +++--..+.+.+|+.
T Consensus 104 ----------------------~pn~~v~~vet~~~~s~~q~-----k~Q~~--W~~qfs~dEs-l~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 104 ----------------------NPNVLVYNVETGVQRSQIQK-----KMQNG--WVPQFSIDES-LAARLVSNEVQFYDL 153 (566)
T ss_pred ----------------------CCceeeeeeccceehhheeh-----hhhcC--cccccccchh-hhhhhhcceEEEEec
Confidence 12445566554211111111 00112 4677887775 333334556777765
Q ss_pred cccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC--eEEEe---eC---CeEEEEecCCCeeE
Q 001415 749 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS--YVMSA---SG---GKISLFNMMTFKTM 820 (1082)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~--~l~~~---sd---g~i~iwd~~~~~~~ 820 (1082)
... ......+ |...|..+.+||.+. .+|+- .+ ..++||...-....
T Consensus 154 ~~f----------------------~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 154 GSF----------------------KTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred CCc----------------------cceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 431 0111111 677889999998754 34432 13 45999987622211
Q ss_pred EEEC---CCCCCeeEEEEecCCCcEEEEEeC-----------CCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEE
Q 001415 821 ATFM---PPPPAATFLAFHPQDNNIIAIGMD-----------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 886 (1082)
Q Consensus 821 ~~~~---~~~~~v~~l~~sp~~~~~lasg~~-----------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 886 (1082)
..+. -....-..+.|.+.+..+|+.++. ..++++.++....+...+. -.++|.++.|+|+++-++
T Consensus 208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~ 286 (566)
T KOG2315|consen 208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFA 286 (566)
T ss_pred chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEE
Confidence 1111 112233456777744445544442 2368888887445555554 468999999999998765
Q ss_pred E--EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Ee---cCeEEEEEccCcceeeeeccC
Q 001415 887 S--SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH---ETQLAIFETTKLECVKQWVPR 960 (1082)
Q Consensus 887 s--~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~ 960 (1082)
. |-.-..+.|+|++. ..+....+|. -..+-|+|.|++++. +. .|.+.|||+.+.+++..+..
T Consensus 287 VvyGfMPAkvtifnlr~-----~~v~df~egp------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a- 354 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRG-----KPVFDFPEGP------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA- 354 (566)
T ss_pred EEEecccceEEEEcCCC-----CEeEeCCCCC------ccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-
Confidence 5 44567899999988 2344555543 378999999999988 43 47899999999999888874
Q ss_pred CCCcceeEEEEcCCCceEEEee------cCCcEEEEecCCcee
Q 001415 961 ESSAPITHATFSCDSQLVYACF------LDATVCVFSAANLKL 997 (1082)
Q Consensus 961 ~h~~~i~~l~~s~dg~~l~t~s------~dg~v~vwd~~~~~~ 997 (1082)
..-+-..|+|||++++|++ .|+.++||++....+
T Consensus 355 ---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 355 ---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 3456678999999999887 478999999875443
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.2e-11 Score=138.75 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=138.4
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEc--CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs--~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.+..|...+.+.+|||||++|+.+.. .+..|.+||+.+++... +..+.+.+.+.+|||
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 255 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSP 255 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECC
Confidence 45568889999999999997555433 24679999998886543 344566788899999
Q ss_pred CCCeEEEE-eCCCe--EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCC--cEEEEEccCCceeEE
Q 001415 431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI 504 (1082)
Q Consensus 431 dg~~las~-~~d~~--v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~--~i~vwd~~~~~~~~~ 504 (1082)
||+.|+.. +.++. |.+||+.++... .+..+.+......|+|||+. ++..+ .++ .|.+||+.++.. +.
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~-~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNP-RR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCe-EE
Confidence 99988754 44554 777788887643 35566667788999999995 44444 333 588888766554 44
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCC---CcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
+..+.+.+....|+|+ |+.|+..+.+ ..|.+||+...... .+.. ...+....|+|||+
T Consensus 329 lt~~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~--------------- 389 (435)
T PRK05137 329 ISFGGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGR--------------- 389 (435)
T ss_pred eecCCCcccCeEECCC--CCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCC---------------
Confidence 4434555666677654 4667665443 35777887543322 2211 12234445555554
Q ss_pred ecCCCCEEEEEeC-C-----CeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 582 FDTTKNRFLAAGD-D-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 582 ~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
.++..+. . ..+.++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ------~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 ------VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred ------EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 5544332 1 3678888866544 3343222 245667766
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=5.2e-11 Score=135.69 Aligned_cols=216 Identities=13% Similarity=0.076 Sum_probs=139.7
Q ss_pred CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC---CCeEEEEEccCCceeeE
Q 001415 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 457 (1082)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~iwd~~~~~~~~~ 457 (1082)
..|.+||..+..... +..|...+.+.+|||||+.||..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 368888876544322 5577889999999999999998764 468999999988643
Q ss_pred EEEeeccccCeeEEEecCCCCceEEEEEeCCCc--EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCC-
Q 001415 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG- 533 (1082)
Q Consensus 458 ~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg- 533 (1082)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+.+......|+++ |+.|+..+ .+|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD--GSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC--CCEEEEEECCCCC
Confidence 25556677889999999996 4456666665 77778887765 456656666667777654 46666655 333
Q ss_pred -cEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceE
Q 001415 534 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLL 609 (1082)
Q Consensus 534 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 609 (1082)
.|.+||+...... .+......+.... |+|+|+.++.... +..|.+||+.++..
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~---------------------~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISFGGGRYSTPV---------------------WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCeE-EeecCCCcccCeE---------------------ECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 5777776543322 2221222233334 4455556665443 24688889865543
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECC------CcEEEEEecCC
Q 001415 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 650 (1082)
Q Consensus 610 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d------g~i~iwd~~~~ 650 (1082)
..+... . .+....|+|||+.|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333321 1 36778999999998876543 24666666544
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=1e-09 Score=120.53 Aligned_cols=209 Identities=16% Similarity=0.198 Sum_probs=131.8
Q ss_pred ccEEEeecCCCeEEEee--CCeEEEEecCC-CeeEEE---E----------CCCCCCeeEEEEecCCCcEEEEEe-CCCc
Q 001415 789 VPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDSS 851 (1082)
Q Consensus 789 i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~v~~l~~sp~~~~~lasg~-~dg~ 851 (1082)
...++++|++++|+++. +|.|.++++.. +..... + ........++.|+| +++++++.. ....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR 167 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence 34577778888777775 57788888765 333222 1 11234578999999 777666654 3458
Q ss_pred EEEEecccce--ee--eeec-ccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcC--CcccccceeeeccCCCCCCCCCC
Q 001415 852 IQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSD 923 (1082)
Q Consensus 852 v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v 923 (1082)
|++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. .+.....................
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999997654 21 2222 2334568899999999886665 57789999998 44332222222221111111246
Q ss_pred cEEEEcCCCcEEEEE--ecCeEEEEEcc--Ccce--eeeeccCCCCcceeEEEEcCCCceEEEee-cCCcEEEEec--CC
Q 001415 924 TRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSA--AN 994 (1082)
Q Consensus 924 ~~~~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~vwd~--~~ 994 (1082)
..++++|||++|.++ ..+.|.+|+++ ++.. +..+.. .......++++|||++|++++ .++.|.+|++ .+
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 789999999999996 45689999983 3333 333332 234589999999999999887 5578999876 57
Q ss_pred ceeeee
Q 001415 995 LKLRCR 1000 (1082)
Q Consensus 995 ~~~~~~ 1000 (1082)
|++...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 776543
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=7.2e-10 Score=119.56 Aligned_cols=481 Identities=13% Similarity=0.112 Sum_probs=262.5
Q ss_pred CCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCce------------eeEEEEeeccccCeeEEEecCCCCceEEEEE
Q 001415 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485 (1082)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~------------~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~ 485 (1082)
.......|++|+....|+|+|+.||.+++..+.+... +..-.++.||.+.|.-+.|..+.+ -|-|.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--ccccc
Confidence 3455789999999999999999999999998764321 112236789999999999998888 58888
Q ss_pred eCCCcEEEEEccCCceeEEee--cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEcc
Q 001415 486 GDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563 (1082)
Q Consensus 486 s~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 563 (1082)
..+|.|.||-+-.|.-...+. ...+.|.+++|. .+|..++....||.|.+=.++.. ...-....+.....
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~h----- 161 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAH----- 161 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeeccc-eecchhcchheccc-----
Confidence 899999999987775443322 244567888875 45578888888888877655421 11111111222223
Q ss_pred CCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcC-eEEEcCCCCEEEEEECCCcE
Q 001415 564 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP-RIRFNKDGCLLAVSTNDNGI 642 (1082)
Q Consensus 564 d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~l~~~~~dg~i 642 (1082)
+.|++|.+.++.+-.+|.+.+||.... ....+...- .|+ .-.|+.-+..++. +
T Consensus 162 ----------------v~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c---~Vn~tg~~s~~~~kia~------i 215 (1189)
T KOG2041|consen 162 ----------------VLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDC---EVNGTGIFSNFPTKIAE------I 215 (1189)
T ss_pred ----------------eeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhce---EEeeeeeecCCCccccc------e
Confidence 444555556777777889999986532 111110000 000 0011111111110 0
Q ss_pred EEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccce
Q 001415 643 KILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 722 (1082)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 722 (1082)
-|. ++ ... ...|+-..++++..+|.+.+-.-.....+..+. ..-.+
T Consensus 216 -~w~--~g---------~~~--------------~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~ 261 (1189)
T KOG2041|consen 216 -EWN--TG---------PYQ--------------PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKI 261 (1189)
T ss_pred -eec--cC---------ccc--------------cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEe
Confidence 010 00 000 002344444555555544443332211111110 22456
Q ss_pred eEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEE
Q 001415 723 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 802 (1082)
Q Consensus 723 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~ 802 (1082)
....|+++|..+++++.+..-. ....+..+.++.+-....-.... ....|++++|-..|-.+|
T Consensus 262 vgakWnh~G~vLAvcG~~~da~-------------~~~d~n~v~Fysp~G~i~gtlkv----pg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDAD-------------EPTDSNKVHFYSPYGHIVGTLKV----PGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred ecceecCCCcEEEEccCccccc-------------CccccceEEEeccchhheEEEec----CCceeeeeEEcCCceEEE
Confidence 7788889998888887763110 00011122333322221111111 567899999999998999
Q ss_pred EeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCC
Q 001415 803 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 882 (1082)
Q Consensus 803 ~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 882 (1082)
.+-|+.|.+=+++..-.-..+. ..|.- .++..+. -.-.|.+||..+.+....-- ....+++|+.+-
T Consensus 325 ~AvdsfiyfanIRP~ykWgy~e---~TvVy-~y~~~e~-------p~y~i~Fwdtk~nek~vK~V---~~~~~~a~~~eh 390 (1189)
T KOG2041|consen 325 IAVDSFIYFANIRPEYKWGYIE---ETVVY-VYQKEEL-------PQYGIMFWDTKTNEKTVKTV---THFENMAFYREH 390 (1189)
T ss_pred EEecceEEEEeecccceEEEee---eEEEE-EEccCCC-------cceEEEEEecccChhhhhhh---cceeehheeccc
Confidence 9999999887776322111111 00110 1111011 01247889988765332221 224578888888
Q ss_pred CEEEEEeCCCcEEEEEcC-CcccccceeeeccCCCCCC--CCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeee--
Q 001415 883 NVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW-- 957 (1082)
Q Consensus 883 ~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~--~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~-- 957 (1082)
-.|+.-..|+.|.-++.- +........+...-|.... ...|.-.-..-++.++++++...+.+|.....+....+
T Consensus 391 CvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~ 470 (1189)
T KOG2041|consen 391 CVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAG 470 (1189)
T ss_pred EEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhh
Confidence 888888888887766221 1111001111111111100 01111112223677777778888899986433211110
Q ss_pred -----------------------c-----cCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeee
Q 001415 958 -----------------------V-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1001 (1082)
Q Consensus 958 -----------------------~-----~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~ 1001 (1082)
. ..|..++|-+++.| .++|..+-..|.|.-|.+.+..+....
T Consensus 471 ~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y 540 (1189)
T KOG2041|consen 471 VKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSY 540 (1189)
T ss_pred hhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecc
Confidence 0 11335677777775 478888999999999999988776543
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=3.9e-11 Score=135.91 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=123.6
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~ 492 (1082)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999987643 459999999886543 3334456678999999995 445677788877
Q ss_pred EEEcc-CCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeee
Q 001415 493 VWDAT-NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 569 (1082)
Q Consensus 493 vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~ 569 (1082)
||.+. .+.....+..+.+.+....|+++ |+.|+..+ .++...+|.++... ....+........
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~------------ 331 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT------------ 331 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC------------
Confidence 77653 23345666656655666777654 46666554 35667777654211 1111111111111
Q ss_pred ecccccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415 570 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1082)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 640 (1082)
...|+|+|++++..+.++ .|.+||+.+++...... .. ......|+|||+.|+..+.++
T Consensus 332 ---------~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~---~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 332 ---------SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TT---RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ---------ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CC---CccCceECCCCCEEEEEEecC
Confidence 234566666777655443 69999998887543322 21 246789999999998877554
No 244
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.43 E-value=9.7e-08 Score=116.06 Aligned_cols=521 Identities=13% Similarity=0.112 Sum_probs=271.8
Q ss_pred CCCceEEEEecCCCeEEEE-EcCCC--cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 358 GSSPMSMDFHPVQQTLLLV-GTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llas-gs~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
...+...+|.++...++++ +.... .|.+......... ..+.-|+... .....+.|.++.|-+|...
T Consensus 21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~~~---------~~~~~~~ivs~~yl~d~~~ 89 (928)
T PF04762_consen 21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSV--EVLASWDAPL---------PDDPNDKIVSFQYLADSES 89 (928)
T ss_pred ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCce--eEEEeccccC---------CcCCCCcEEEEEeccCCCc
Confidence 3467788888877654443 33322 2444433322211 1111122110 1234578999999999999
Q ss_pred EEEEeCCCeEEEE----EccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-----------
Q 001415 435 FGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----------- 499 (1082)
Q Consensus 435 las~~~d~~v~iw----d~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~----------- 499 (1082)
|+.+..+|.|.+. +..+... . ....-..+|.+++||||+. +|+....++++.+-+ .+-
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~~~-E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt-~~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDEDEI-E---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLMT-RDFDPISEVPLDSD 162 (928)
T ss_pred EEEEECCceEEEEEccCCCCCcee-E---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEEe-ccceEEEEeecCcc
Confidence 9999999999999 5444332 1 2333467899999999999 566666677776643 111
Q ss_pred -------------ceeEEeecCCcC------------------e----EEEeeeecCCceEEEEecC---C---CcEEEE
Q 001415 500 -------------AKQYIFEGHEAP------------------V----YSVCPHHKENIQFIFSTAL---D---GKIKAW 538 (1082)
Q Consensus 500 -------------~~~~~~~~h~~~------------------v----~~~~~~~~~~~~~l~s~~~---d---g~i~iw 538 (1082)
+.-..|.|..+. + ..+.++..+||.++++.+. . +.+|+|
T Consensus 163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy 242 (928)
T PF04762_consen 163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVY 242 (928)
T ss_pred ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEE
Confidence 111112111110 1 2233445678888888764 2 468888
Q ss_pred ecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceEEEEecC
Q 001415 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDAD 615 (1082)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~ 615 (1082)
+-+. ......+ ++ .+--..++|-|.|+.+++... ...|.+|.- +|-....+...
T Consensus 243 ~ReG-~L~stSE----~v-----------------~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~ 299 (928)
T PF04762_consen 243 SREG-ELQSTSE----PV-----------------DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLR 299 (928)
T ss_pred CCCc-eEEeccc----cC-----------------CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence 6541 1111111 11 112234566677777776543 456777763 44444444333
Q ss_pred --CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCC-CCceeeeccCC
Q 001415 616 --GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLAD-VKPRITEESND 692 (1082)
Q Consensus 616 --~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~d~ 692 (1082)
.....|..++|++|+..|++...|. |.+|-..+-.-.++..-..........+.| .|. ...+.....++
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W-------dpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW-------DPEKPLRLHVLTSNG 371 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE-------CCCCCCEEEEEecCC
Confidence 2334689999999999999987655 999988776322222111111100001333 333 33345555555
Q ss_pred ceeEEEecccCCCCccccccccCcccccceeEEEEc----cCCceeeecccCCeEEEeeccccccCCCCCcccccCcccc
Q 001415 693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT----NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 768 (1082)
Q Consensus 693 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 768 (1082)
.+..++..- .+..+ |+..-.++.-....+.+-.+.....-|.-
T Consensus 372 ~~~~~~~~~----------------------~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPM----------- 418 (928)
T PF04762_consen 372 QYEIYDFAW----------------------DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPM----------- 418 (928)
T ss_pred cEEEEEEEE----------------------EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchH-----------
Confidence 555444321 11111 11111222222223343322211110000
Q ss_pred CCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeE--------EEEC----------CCCCC
Q 001415 769 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTM--------ATFM----------PPPPA 829 (1082)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~--------~~~~----------~~~~~ 829 (1082)
.... + .....|.+++|++++..+++- +||.|.+|........ ..+. .....
T Consensus 419 ---s~~~----l---~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (928)
T PF04762_consen 419 ---SSYE----L---ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGS 488 (928)
T ss_pred ---hceE----E---cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccccc
Confidence 0000 1 145789999999998755555 5898888885432111 1111 12345
Q ss_pred eeEEEEecCCCcEEEEEeCC---CcEEEEecccce---eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc
Q 001415 830 ATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 903 (1082)
Q Consensus 830 v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 903 (1082)
+..++|.. +..+++....+ ..+.++++...+ .+.....-.+.+..+...++...++.-..||.+...+.....
T Consensus 489 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 489 LRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 78889988 56666655554 578888874332 223333334556666666665556667779988766655532
Q ss_pred cccceeeeccCCCCCCCCCCcEEEEcCCCc--EEEEE--ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415 904 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--HFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 979 (1082)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~--~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 979 (1082)
... .+.+.. ..-..+....+.. .++.+ ..+.+++ ++..+ ...+++.++. +.+|+
T Consensus 568 ~~~---~~fp~~-----c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l--------a~~~tSF~v~--~~~Ll 625 (928)
T PF04762_consen 568 SQI---VKFPQP-----CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL--------ASNCTSFAVT--DSFLL 625 (928)
T ss_pred ccc---ccCCCC-----CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE--------ecCCceEEEE--cCEEE
Confidence 111 111111 1112222222222 23333 3344443 22222 2456777764 56777
Q ss_pred EeecCCcEEEEecC
Q 001415 980 ACFLDATVCVFSAA 993 (1082)
Q Consensus 980 t~s~dg~v~vwd~~ 993 (1082)
.......+++.++.
T Consensus 626 ~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 626 FTTTQHTLKFVHLN 639 (928)
T ss_pred EEecCceEEEEECc
Confidence 77778888988888
No 245
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=1.1e-12 Score=134.36 Aligned_cols=273 Identities=13% Similarity=0.127 Sum_probs=196.8
Q ss_pred CceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc
Q 001415 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1082)
Q Consensus 421 ~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~ 500 (1082)
-.-..+.++.+|++|+.|+..|.|..+|+.++.... ++. -...|.++.|-.+.+ ++|.+ ....+.||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 356789999999999999999999999999988665 332 245789999998888 45544 567899999 8899
Q ss_pred eeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEE
Q 001415 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
.++.++.| ..|..+.|.|.- -+|++++..|.++.-|+.+++.+..+....+.+..+.
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~-------------------- 258 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK-------------------- 258 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhh--------------------
Confidence 99988855 578888887654 5788888899999999998877766665555444444
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1082)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1082)
-+|-+..+-+|...|+|.+|.....+++..+..|.+ +|.++++.++|+|+++.+.|..++|||+++-.++......+
T Consensus 259 -qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g--~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 259 -QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG--PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred -cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC--CcceEEECCCCcEEeecccccceeEeeeccccccceeecCC
Confidence 444445677888999999999999988887776655 79999999999999999999999999998875443333222
Q ss_pred cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415 661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 740 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 740 (1082)
... .+++ ..+-+++.+....+.+|.-...... ......+ .+.....|..+.|.|-...|-.+...
T Consensus 336 ~a~----~ls~---------SqkglLA~~~G~~v~iw~d~~~~s~-~~~~pYm-~H~~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 336 PAS----NLSL---------SQKGLLALSYGDHVQIWKDALKGSG-HGETPYM-NHRCGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred Ccc----cccc---------ccccceeeecCCeeeeehhhhcCCC-CCCcchh-hhccCcccccceeccHHHeeeccccC
Confidence 111 2222 3334555666678889974432211 1111111 11234588999999987766555555
Q ss_pred Ce
Q 001415 741 AI 742 (1082)
Q Consensus 741 ~~ 742 (1082)
|.
T Consensus 401 G~ 402 (545)
T KOG1272|consen 401 GI 402 (545)
T ss_pred Cc
Confidence 43
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=7.3e-11 Score=134.27 Aligned_cols=215 Identities=13% Similarity=0.152 Sum_probs=136.6
Q ss_pred CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeE
Q 001415 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ 457 (1082)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~ 457 (1082)
..|.+||...+.... +..|...+.+.+|||||+.||..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468888886543322 45667789999999999999988743 469999998876432
Q ss_pred EEEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCCc
Q 001415 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK 534 (1082)
Q Consensus 458 ~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~ 534 (1082)
+..+.+...+++|+|||+. ++++.+.++ .|.+||+.+++. ..+..+.......+|+++ |+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC--CCEEEEEECCCCC
Confidence 3344455668899999996 344555555 599999988775 445556555566777654 46666655 4455
Q ss_pred --EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001415 535 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1082)
Q Consensus 535 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1082)
|.++|+.++... .+......... .+|+|+|++++..+.+ ..|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~---------------------~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNAR---------------------ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccC---------------------EEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 555555443321 11112222223 4455555566654432 36999999887755
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEecC
Q 001415 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 649 (1082)
Q Consensus 610 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d---g~i~iwd~~~ 649 (1082)
.+.. .. ......|+|||++++..+.+ +.+.+++...
T Consensus 374 -~Lt~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLTP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECCC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3322 21 24567999999988877653 3466666643
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=5e-10 Score=116.93 Aligned_cols=324 Identities=11% Similarity=0.136 Sum_probs=185.9
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC---------------cEE
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------------GIK 643 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg---------------~i~ 643 (1082)
.++++|.|.+|++.... .|.+|....+..+..+... .|..+.|+|.+++|.+-+..+ .+.
T Consensus 37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~----~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 37 YVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHP----DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred heeecCcchheehhhcc-ceEEccccchhheeeeecC----CceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence 33444444466665544 4889988777655555422 478899999999999875444 388
Q ss_pred EEEecCCccceeecccccccc-cccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccce
Q 001415 644 ILATSDGIRLLRTFENLAYDA-SRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 722 (1082)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 722 (1082)
+||..++ .++..+....... ....+.| +.+..+.+-. ....+.++++...........+ ....|
T Consensus 112 vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~-------s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l------r~~gi 176 (561)
T COG5354 112 VWDIASG-MIVFSFNGISQPYLGWPVLKF-------SIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL------RPVGI 176 (561)
T ss_pred EEeccCc-eeEeeccccCCcccccceeee-------eecchhhhhh-ccCeEEEEecCCccccCchhhc------cccce
Confidence 9999888 5555555443331 0002222 5555554433 2345666665322222222222 12345
Q ss_pred eEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEE
Q 001415 723 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 802 (1082)
Q Consensus 723 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~ 802 (1082)
....|+|.++ ...+..|--. .
T Consensus 177 ~dFsisP~~n-------~~~la~~tPE----------------------k------------------------------ 197 (561)
T COG5354 177 LDFSISPEGN-------HDELAYWTPE----------------------K------------------------------ 197 (561)
T ss_pred eeEEecCCCC-------CceEEEEccc----------------------c------------------------------
Confidence 5555665541 1112222100 0
Q ss_pred EeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEe-----------CCCcEEEEecccceeeeeeccccc
Q 001415 803 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----------DDSSIQIYNVRVDEVKSKLKGHSK 871 (1082)
Q Consensus 803 ~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-----------~dg~v~iwd~~~~~~~~~l~~h~~ 871 (1082)
.+..+.+++|.+..++.+.+..-....-..+.|.+ .|.+|++-- ....++|+++....+... .+-.+
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~ 275 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKD 275 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccc
Confidence 01124455555554443333222222223344555 333332211 135788888874443333 36689
Q ss_pred CEEEEEEeCCCCEEEEEe--CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec---CeEEE
Q 001415 872 RITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---TQLAI 945 (1082)
Q Consensus 872 ~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d---~~i~i 945 (1082)
+|...+|.|+++.+++.+ .+..+.++|+++. ...-.+++. -..+.|||.++++++ +.+ |.+.+
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~------rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQK------RNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc-----eEEecCCcc------cccccccCcccEEEEecCCccccceEE
Confidence 999999999998876654 6788999999883 122233322 257889999999988 444 67999
Q ss_pred EEccCcceee-eeccCCCCcceeEEEEcCCCceEEEee------cCCcEEEEecCCceee
Q 001415 946 FETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANLKLR 998 (1082)
Q Consensus 946 wd~~~~~~~~-~~~~~~h~~~i~~l~~s~dg~~l~t~s------~dg~v~vwd~~~~~~~ 998 (1082)
||....-.+. .+. ....+-+.|||||+++.+.. .|..|+|||+......
T Consensus 345 ~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 345 FDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred eccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 9986544333 444 23345567999999987765 4788999999765443
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=6.7e-11 Score=116.90 Aligned_cols=349 Identities=16% Similarity=0.237 Sum_probs=212.4
Q ss_pred ccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-----eeEEeecCC------------cCeEEEeeeecCCceEEE
Q 001415 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF 527 (1082)
Q Consensus 465 ~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 527 (1082)
.+-|.++.|...|. +|++|..+|.|.++.-.... ....+..|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45789999999999 89999999999999744322 223444443 357788888888888888
Q ss_pred EecCCCcEEEEecCCCCcee-----eecCCCCceEEEEEc---c-------CCCeeeecccccceeEEEecCCCCEEEEE
Q 001415 528 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYS---A-------DGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1082)
Q Consensus 528 s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s---~-------d~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1082)
..+.|.+|++|.+....... ........+.++..- + ..++++...+...+.++.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 89999999999886543322 111111222222111 1 11256666667789999999999988876
Q ss_pred eCCCeEEEEECCC-cceEEEEecCCC-----CCCcCeEEEcC-CCCEEEEEECCCcEEEEEecCCccceeeccccccccc
Q 001415 593 GDDFSIKFWDMDS-VQLLTSIDADGG-----LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1082)
Q Consensus 593 ~~dg~i~iwd~~~-~~~~~~~~~~~~-----~~~i~~~~~s~-dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1082)
. |=.|.+|+++- .+.......... ..-|++..|+| ..+.++-.+..|+|++-|++...-+..
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~---------- 251 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA---------- 251 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc----------
Confidence 5 66799999863 222222222111 12478889999 456777778889999999875411100
Q ss_pred ccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415 666 RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 745 (1082)
Q Consensus 666 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 745 (1082)
.-+++... . + |..+
T Consensus 252 ---------------------------hsKlfEep--------------e----d--------p~~r------------- 265 (433)
T KOG1354|consen 252 ---------------------------HSKLFEEP--------------E----D--------PSSR------------- 265 (433)
T ss_pred ---------------------------hhhhhccc--------------c----C--------Ccch-------------
Confidence 00000000 0 0 0000
Q ss_pred eeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEec-CCCeeEEEEC
Q 001415 746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM-MTFKTMATFM 824 (1082)
Q Consensus 746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~-~~~~~~~~~~ 824 (1082)
.... +--..|..+.|+++|+|+++-+--+|++||+ ...+++.+++
T Consensus 266 ----------------------------sffs------eiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 266 ----------------------------SFFS------EIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred ----------------------------hhHH------HHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEe
Confidence 0000 0234567788899999988887788999998 3566666666
Q ss_pred CCCC------------C---eeEEEEecCCCcEEEEEeCCCcEEEEeccccee-eeeecccccC--EEEEEEeCCCCEEE
Q 001415 825 PPPP------------A---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKR--ITGLAFSHALNVLV 886 (1082)
Q Consensus 825 ~~~~------------~---v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~--V~~l~~s~d~~~l~ 886 (1082)
-|.. . -..++|+. ++.++++|+....++++++..|.. -.++...... ...+ ..-+.+.
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~ 387 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVS 387 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeee
Confidence 5531 1 24688998 788999999999999999766532 2223222211 1111 1123344
Q ss_pred EEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEE
Q 001415 887 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 946 (1082)
Q Consensus 887 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iw 946 (1082)
+++......+|-..- ... ..+...+|+|....+|++..+.++||
T Consensus 388 ~~g~r~~~~~~vd~l---------df~-------kkilh~aWhp~en~ia~aatnnlyif 431 (433)
T KOG1354|consen 388 SSGKRKRDEISVDAL---------DFR-------KKILHTAWHPKENSIAVAATNNLYIF 431 (433)
T ss_pred cCCCccccccccchh---------hhh-------hHHHhhccCCccceeeeeecCceEEe
Confidence 444443322221100 000 23567889999999998777777776
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=4e-10 Score=117.62 Aligned_cols=361 Identities=13% Similarity=0.186 Sum_probs=226.0
Q ss_pred cCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC-------
Q 001415 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK------- 489 (1082)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~------- 489 (1082)
....-++..++|||.|++|++....+ |.+|....+..+. .+. ...|..+.|||.++ ||++-+...
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~~--~~~V~~~~fSP~~k--YL~tw~~~pi~~pe~e 100 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RFR--HPDVKYLDFSPNEK--YLVTWSREPIIEPEIE 100 (561)
T ss_pred cccCcchhheeecCcchheehhhccc-eEEccccchhhee---eee--cCCceecccCcccc--eeeeeccCCccChhhc
Confidence 33556899999999999999887655 9999988776433 232 34699999999999 888875433
Q ss_pred --------cEEEEEccCCceeEEeecCCcC--eE-EEeeeecCCceEEEEecCCCcEEEEecCCCCceeee-cCCCCceE
Q 001415 490 --------TIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCT 557 (1082)
Q Consensus 490 --------~i~vwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~ 557 (1082)
.+.+||+.+|..+..+.+...+ .+ -+.|+.+. .+++-. ....+.++++...-....+ ......+.
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhcccccee
Confidence 4999999999999999876655 34 45565544 344333 3456888886221111111 11234566
Q ss_pred EEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001415 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637 (1082)
Q Consensus 558 ~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 637 (1082)
..+++|.+.. . ..+-|.|. ..+.++++++|.+..+..+.+-....- .-..+.|.+.|++|++-.
T Consensus 178 dFsisP~~n~--------~-~la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 178 DFSISPEGNH--------D-ELAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred eEEecCCCCC--------c-eEEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEEE
Confidence 6777776531 0 01222222 146788999999987766554432221 124688899998877532
Q ss_pred CCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcc
Q 001415 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 717 (1082)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 717 (1082)
.. +..+++.. -....++++++.... ++... .
T Consensus 242 ~t------~~ksnKsy-----------------------------------fgesnLyl~~~~e~~----i~V~~----~ 272 (561)
T COG5354 242 MT------HTKSNKSY-----------------------------------FGESNLYLLRITERS----IPVEK----D 272 (561)
T ss_pred EE------eeecccce-----------------------------------eccceEEEEeecccc----cceec----c
Confidence 11 11111000 001344555554211 11110 1
Q ss_pred cccceeEEEEccCCceeeecc--cCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee
Q 001415 718 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 795 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 795 (1082)
..+.|..++|.|.++.+++.+ ....+.++++.. ..... + ....=..+.||
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~----------------------Nl~~~--~----Pe~~rNT~~fs 324 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG----------------------NLRFY--F----PEQKRNTIFFS 324 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeeccccc----------------------ceEEe--c----CCccccccccc
Confidence 467899999999998776655 456666665432 21111 1 33444567899
Q ss_pred cCCCeEEEee----CCeEEEEecCCCeeEE-EECCCCCCeeEEEEecCCCcEEEEEe------CCCcEEEEecccceeee
Q 001415 796 KNDSYVMSAS----GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKS 864 (1082)
Q Consensus 796 ~dg~~l~~~s----dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~------~dg~v~iwd~~~~~~~~ 864 (1082)
|.+++++.++ .|.+.+||....-.+. .+.+. ..+-+.|+| |++++.+.. .|..|.|||+......
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f- 400 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF- 400 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC-CceEEEecCCCcccccCcceEEEEecCchhh-
Confidence 9999999876 3789999987654443 55543 345678999 888887765 3778999998754432
Q ss_pred eecccccCEEEEEEeCCCCEEEEEeCCC
Q 001415 865 KLKGHSKRITGLAFSHALNVLVSSGADS 892 (1082)
Q Consensus 865 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg 892 (1082)
..+.+.|-|.|++..+.+.+.
T Consensus 401 -------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 -------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -------hhhhccccCCcccceeeccCC
Confidence 456688888888877666554
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=2.3e-11 Score=120.18 Aligned_cols=155 Identities=12% Similarity=0.214 Sum_probs=107.9
Q ss_pred eEEEEecCCCcEEEEEeC----------CCcEEEEeccc-ceeeeeecc-cccCEEEEEEeCCCCEEEEE--eCCCcEEE
Q 001415 831 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 896 (1082)
Q Consensus 831 ~~l~~sp~~~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~v 896 (1082)
..+.|+| .|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 5655543322 13455555532 223333332 34579999999999987654 45679999
Q ss_pred EEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe----cCeEEEEEccCcceeeeeccCCCCcceeEEEEc
Q 001415 897 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 972 (1082)
Q Consensus 897 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s 972 (1082)
||++.. ....... ..+..+.|||+|++|+++. .|.+.+||.++.+.+.... ...++.++||
T Consensus 88 yd~~~~-----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKGK-----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCccc-----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 999741 1222221 3457899999999999943 4679999999888887764 3357899999
Q ss_pred CCCceEEEeec------CCcEEEEecCCceeeeeeC
Q 001415 973 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 973 ~dg~~l~t~s~------dg~v~vwd~~~~~~~~~~~ 1002 (1082)
|||++|+++.. |+.++||++. |+++....
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999999874 7889999985 66665543
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=5.7e-10 Score=122.60 Aligned_cols=251 Identities=14% Similarity=0.215 Sum_probs=162.2
Q ss_pred CCCccEEEeecCCCeEEEeeC-----CeEEEEecCCC--e--eEEEECCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEE
Q 001415 786 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 855 (1082)
Q Consensus 786 ~~~i~~l~~s~dg~~l~~~sd-----g~i~iwd~~~~--~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iw 855 (1082)
......++++|++++|.+... +.|..|++... + .+............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 345567899999999988853 57888888753 3 3333333445677899999 777777765 58999999
Q ss_pred eccc-ceeeee---ec----------ccccCEEEEEEeCCCCEEEEEeC-CCcEEEEEcCCcc--cccceeeeccCCCCC
Q 001415 856 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 918 (1082)
Q Consensus 856 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~ 918 (1082)
++.. |.+... +. .......++.|+|||+++++.+. ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433222 11 11245788999999999888753 3469999998754 222222333333
Q ss_pred CCCCCcEEEEcCCCcEEEEE--ecCeEEEEEcc--Ccce--eeeeccC--CC--CcceeEEEEcCCCceEEEee-cCCcE
Q 001415 919 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPR--ES--SAPITHATFSCDSQLVYACF-LDATV 987 (1082)
Q Consensus 919 ~~~~v~~~~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~--~h--~~~i~~l~~s~dg~~l~t~s-~dg~v 987 (1082)
...+.++|+||++++.+. .++.|.++++. ++.. +...... +. ......|+++|||++|+++. ..++|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 456899999999998885 45789999988 4432 2222111 11 22678999999999998877 45789
Q ss_pred EEEecC--CceeeeeeCCCeecCC-CCCCCCceeeEEEEeCCCCCeEEEEe-cCCcEEEEccCCCCCcc
Q 001415 988 CVFSAA--NLKLRCRINPSAYLPA-GVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1052 (1082)
Q Consensus 988 ~vwd~~--~~~~~~~~~~~~~~~~-gh~~~~v~~~~~~~~~~d~~~l~s~~-~dg~v~vW~~~~~~~~~ 1052 (1082)
.+|+++ +|++. .+. ..+. | ..|..+.++| ||++|+++. .++.|.+|++....+.|
T Consensus 270 ~vf~~d~~~g~l~-~~~---~~~~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 270 SVFDLDPATGTLT-LVQ---TVPTGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEEECTTTTTEE-EEE---EEEESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEEecCCCceE-EEE---EEeCCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 999993 34433 222 1111 2 3467899999 578877765 66799999886444333
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.5e-11 Score=132.55 Aligned_cols=241 Identities=10% Similarity=0.085 Sum_probs=142.9
Q ss_pred ccccccccccCccccCCCccCCCCCCCCcceeeecCCCCCceEEEEecCCCe--EEEEEcCCC--cEEEEEccccceeee
Q 001415 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT--LLLVGTNVG--DIGLWEVGSRERLVL 396 (1082)
Q Consensus 321 ~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~--llasgs~dg--~i~iwd~~~~~~~~~ 396 (1082)
-+||-++++|.... ++......+..-+|||||+. ++++...+| .|.+.++.+|+...
T Consensus 165 ~~l~~~d~dG~~~~------------------~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~- 225 (428)
T PRK01029 165 GELWSVDYDGQNLR------------------PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK- 225 (428)
T ss_pred ceEEEEcCCCCCce------------------EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-
Confidence 45777777775421 33445667788899999986 333554444 47788888776543
Q ss_pred eceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC-----CCeEEEEEccCCc--eeeEEEEeeccccCee
Q 001415 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVN 469 (1082)
Q Consensus 397 ~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d~~v~iwd~~~~~--~~~~~~~~~~h~~~V~ 469 (1082)
+....+.....+|||||++||..+. +..+.+|++.++. .... ...++.+...
T Consensus 226 -------------------lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~ 284 (428)
T PRK01029 226 -------------------ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQG 284 (428)
T ss_pred -------------------eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcC
Confidence 2223445567899999999998653 2234557776532 2221 1222334456
Q ss_pred EEEecCCCCceEEEEEeCCCcEEEEE--ccC-CceeEEeecCCcCeEEEeeeecCCceEEEEecCC---CcEEEEecCCC
Q 001415 470 DIAFSHPNKQLCVITCGDDKTIKVWD--ATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNL 543 (1082)
Q Consensus 470 ~l~fs~dg~~~~l~s~s~d~~i~vwd--~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 543 (1082)
..+|||||+. ++++...++...+|. +.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.++
T Consensus 285 ~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 285 NPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CeEECCCCCE-EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCC
Confidence 7899999995 233334566655664 332 33445555555566677777654 666655432 36889998876
Q ss_pred CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe---CCCeEEEEECCCcceEEEEecCCCCCC
Q 001415 544 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPA 620 (1082)
Q Consensus 544 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 620 (1082)
+.... ......+....|+|||+ .++... ....|++||+.+++........+ .
T Consensus 362 ~~~~L-t~~~~~~~~p~wSpDG~---------------------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~ 416 (428)
T PRK01029 362 RDYQL-TTSPENKESPSWAIDSL---------------------HLVYSAGNSNESELYLISLITKKTRKIVIGSG---E 416 (428)
T ss_pred CeEEc-cCCCCCccceEECCCCC---------------------EEEEEECCCCCceEEEEECCCCCEEEeecCCC---c
Confidence 54332 22222344455666555 444322 34678899998877655443322 3
Q ss_pred cCeEEEcCC
Q 001415 621 SPRIRFNKD 629 (1082)
Q Consensus 621 i~~~~~s~d 629 (1082)
+...+|+|-
T Consensus 417 ~~~p~Ws~~ 425 (428)
T PRK01029 417 KRFPSWGAF 425 (428)
T ss_pred ccCceecCC
Confidence 556788774
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=4.9e-11 Score=118.01 Aligned_cols=328 Identities=15% Similarity=0.262 Sum_probs=199.8
Q ss_pred ecCCCCEEEEEeCCCeEEEEEC-CCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccc
Q 001415 582 FDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1082)
.-|..+-+++.+.|.+++||-- +.++....+.. ....+++++.+.++...|++|-.+|++.-+.+..........
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~--- 107 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL--- 107 (404)
T ss_pred eccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh---
Confidence 3344456899999999999953 44554444432 223468899999999999999999998776554321110000
Q ss_pred cccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC
Q 001415 661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 740 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 740 (1082)
+.| ..|...+..+.|+-....+++.+.|
T Consensus 108 ----------------------------------r~~------------------~~h~~~v~~~if~~~~e~V~s~~~d 135 (404)
T KOG1409|consen 108 ----------------------------------KDY------------------LAHQARVSAIVFSLTHEWVLSTGKD 135 (404)
T ss_pred ----------------------------------hhh------------------hhhhcceeeEEecCCceeEEEeccc
Confidence 000 1177788888888888888888888
Q ss_pred CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-CCeEEEEe--cCCC
Q 001415 741 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN--MMTF 817 (1082)
Q Consensus 741 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd--~~~~ 817 (1082)
..+. |..... +..+. +... .....++.+.-. +...|. .|.|..-. ....
T Consensus 136 k~~~-~hc~e~-----~~~lg-----------~Y~~---------~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~ 187 (404)
T KOG1409|consen 136 KQFA-WHCTES-----GNRLG-----------GYNF---------ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGC 187 (404)
T ss_pred cceE-EEeecc-----CCccc-----------ceEe---------eccCCCCceeeE--EEEecccccceEEEEEeecCC
Confidence 6654 322110 00000 0000 011111111111 233332 24444433 3456
Q ss_pred eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee-eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEE
Q 001415 818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 896 (1082)
Q Consensus 818 ~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v 896 (1082)
..+.++.+|.+.+++++|.| ..++|.+|..|..|.+||+...+- ...+.+|...|..+...+--+.|++++.||.|.+
T Consensus 188 ~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 188 QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred ceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 77889999999999999999 889999999999999999986543 4678899999999998888899999999999999
Q ss_pred EEcCCcccccceeee-------------------------ccCCCCCCC-CCCcEEEEcCCCcEEEEEecCeEEEEEccC
Q 001415 897 WSSDGWEKQKNRFLQ-------------------------IPTGRTPTA-QSDTRVQFHQDQIHFLVVHETQLAIFETTK 950 (1082)
Q Consensus 897 wd~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~v~~~~fspdg~~l~~~~d~~i~iwd~~~ 950 (1082)
|+.+.........+. ....|-... ..+...+-+....+...+.+-.+++.|.-.
T Consensus 267 w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~ 346 (404)
T KOG1409|consen 267 WNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCY 346 (404)
T ss_pred EeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccc
Confidence 999864322211100 000000000 111111112222222224444555554311
Q ss_pred c-----ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415 951 L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 951 ~-----~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~ 994 (1082)
. .......++.-...|+++.+-.+-.+|+|++.|..|+|||+..
T Consensus 347 ~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 347 PTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1 1100111112245799999998989999999999999999863
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=7.8e-11 Score=118.83 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=176.9
Q ss_pred cCCCCCceEEEEecCCCeEEEEEc-CCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs-~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1082)
+.....|..++|--|++.=+..+. .|..+............. +|+.. .....++.|..++.. ..
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg 116 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DG 116 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CC
Confidence 345678888999888765444444 555666666555444332 12221 234445667666653 33
Q ss_pred eEEEEeCCCeEEEEEccCCceee-EEEEeeccccCeeEEEecCCCCceEEEEEeCC--CcEEEEEccCCceeEEeecC--
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEGH-- 508 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~h-- 508 (1082)
.|.+|-.+|.+.+|..+.+..-. ....+..+ .++..|.-++.... ++++||.. ..+.+||+++.+.+.+-+.-
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCC
Confidence 67777889999999998543111 11123333 56777777777775 67779988 88999999988666543321
Q ss_pred -----C--cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 509 -----E--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 509 -----~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
. -.++++.|.+..+...+++++.-+.+++||.+.++. +|.++.|. ...+.++.
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR---------PV~~fd~~-----------E~~is~~~ 254 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR---------PVAQFDFL-----------ENPISSTG 254 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc---------ceeEeccc-----------cCcceeee
Confidence 1 234566676664468999999999999999985443 23333332 12455566
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEE-EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCC
Q 001415 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
..|+++++++|..-|.+..+|+++++.... +.+..+ .|+++..+|.+++|++++-|..+||+|+.+.
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 666667899999999999999999988776 554444 7999999999999999999999999999885
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=3.5e-09 Score=112.27 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=124.6
Q ss_pred cEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc-ceee--
Q 001415 790 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK-- 863 (1082)
Q Consensus 790 ~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-- 863 (1082)
..++++|||+++.+.. +..|.+.|+.+++.+..+.... ...-...++ +..++ -+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~~--~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFFM--HCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccEE--EeecCceEEEEecCCCceEEe
Confidence 3567778888777664 4678888888888877766422 122222222 22111 12344333322221 1100
Q ss_pred --eeecccccCE-EEEEEeC-CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC----CCCCCCcEEEEcCCCcEE
Q 001415 864 --SKLKGHSKRI-TGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHF 935 (1082)
Q Consensus 864 --~~l~~h~~~V-~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~fspdg~~l 935 (1082)
..+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+.............. -..+...-++++||++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111100000 0004466 8887776665 99999997664433333332221110 011444559999999988
Q ss_pred EEEe---c--------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCc-eEEEee-cCCcEEEEecCCceeeeeeC
Q 001415 936 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 936 ~~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s-~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
.+.. . +.|.++|..+++.+..+.. ...+..+++||||+ +|++.+ .++.|.|+|..+++.+..+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8732 1 5799999999999998876 35889999999999 888776 57889999999999998873
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=9.3e-11 Score=118.31 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=103.5
Q ss_pred CCccEEEeecC--CCeEEEeeC-CeEEEEecCCC-eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee
Q 001415 787 EAVPCFALSKN--DSYVMSASG-GKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 862 (1082)
Q Consensus 787 ~~i~~l~~s~d--g~~l~~~sd-g~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 862 (1082)
-+++++.|-+. ...+|++.. +.+++||...+ +++..+.-....++++...| +++++++|..-|.+..||+++++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 34567777776 778888875 99999999865 56777887788999999999 999999999999999999999998
Q ss_pred eee-ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccc
Q 001415 863 KSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 904 (1082)
Q Consensus 863 ~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~ 904 (1082)
... +++-.+.|++|..+|.+++|+++|-|..|||+|+++.+.
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 877 899999999999999999999999999999999999544
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=4.1e-09 Score=106.54 Aligned_cols=281 Identities=10% Similarity=0.112 Sum_probs=180.7
Q ss_pred CCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccC---CeEEEeeccccccCCCCCcccccCccc
Q 001415 691 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 767 (1082)
Q Consensus 691 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~ 767 (1082)
+..|.+|++.+... .+..+.+-. ....++-++|+++++.|.++..+ |.+.-|.+
T Consensus 15 s~gI~v~~ld~~~g--~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTG--ELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCccc--ccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 46799999984322 122211111 56678889999999988877665 56666654
Q ss_pred cCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEecCC-CeeEEE--ECCCCCC----------eeE
Q 001415 768 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 832 (1082)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------v~~ 832 (1082)
|..+|.+....... ....+...++++++|++++++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33334322211000 0233447899999999999997 58899999864 332211 2223333 788
Q ss_pred EEEecCCCcEEEEEeC-CCcEEEEecccceeee----eecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCc--cc
Q 001415 833 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGW--EK 904 (1082)
Q Consensus 833 l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~--~~ 904 (1082)
..+.| ++++|++.+- --.|.+|++..|++.. .++ ....-..|.|+|++++..... -+++|.+|..+.. +.
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 99999 8888877653 2379999999776432 222 233457899999999977665 5899999999883 33
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEec--CeEEEEEccC--cceeeeeccCCCCcceeEEEEcCCCceEEE
Q 001415 905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE--TQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYA 980 (1082)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~~i~iwd~~~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t 980 (1082)
...+.+...............|..++||++|.++.. ..|.+|.++. +++...-...-+........|+++|++|++
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 332333222222223356788999999999999754 3688887653 332221111233445788999999999999
Q ss_pred eecC-CcEEEEecC--Cceee
Q 001415 981 CFLD-ATVCVFSAA--NLKLR 998 (1082)
Q Consensus 981 ~s~d-g~v~vwd~~--~~~~~ 998 (1082)
+.++ ..|.||..+ +|++-
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EccCCCcEEEEEEcCCCceEE
Confidence 9866 458888765 55544
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=2.9e-08 Score=102.67 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=133.0
Q ss_pred CCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEecccceeeeeecccccCEEE
Q 001415 797 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 875 (1082)
Q Consensus 797 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 875 (1082)
+|.+++..+.|+..|.+...+-.++. ++.+.|.-..+.. ++.-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence 78899999999988888765544433 4666788888888 677888999999 999999998875 455667788999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe-----cCeEEEEEccC
Q 001415 876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-----ETQLAIFETTK 950 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-----d~~i~iwd~~~ 950 (1082)
+..++||++++.+.....|.+.|++++.. +.+...+ . +-|+.++|+|+++++|.+. ...|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv---~~idkS~--~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNV---RLIDKSE--Y---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCe---eEecccc--c---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 99999999999998888999999999753 2222211 1 5689999999999999863 34799999999
Q ss_pred cceeeeeccCCCCcceeEEEEcCCCceEEEee
Q 001415 951 LECVKQWVPRESSAPITHATFSCDSQLVYACF 982 (1082)
Q Consensus 951 ~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s 982 (1082)
++....-.+.+| =.+-+|.|||++|..-+
T Consensus 479 ~Kiy~vTT~ta~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTAY---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCccc---ccCcccCCCCcEEEEEe
Confidence 888766554333 23458999999887655
No 259
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=1.2e-10 Score=115.08 Aligned_cols=112 Identities=20% Similarity=0.327 Sum_probs=91.1
Q ss_pred CCCCccEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEecc
Q 001415 785 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 858 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~ 858 (1082)
...+|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++|+. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999877653 4689999996 56666664 45778999999 8999998874 4679999999
Q ss_pred cceeeeeecccccCEEEEEEeCCCCEEEEEeC------CCcEEEEEcCCc
Q 001415 859 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW 902 (1082)
Q Consensus 859 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~ 902 (1082)
+.+.+.... |. .++.++|+|||++|++++. |..++||+..+.
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 888887765 33 4789999999999999874 788999999764
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.7e-09 Score=113.84 Aligned_cols=322 Identities=11% Similarity=0.165 Sum_probs=203.1
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----------CcEEEE
Q 001415 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKIL 645 (1082)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-----------g~i~iw 645 (1082)
-+.+.|+|.|.+|++--..| |.+|--.+...++.+... .|.-+.|||+.+||++-+.. ..+.||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 34566677777888877665 789977766666666432 47889999999999986532 345666
Q ss_pred EecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEE
Q 001415 646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 725 (1082)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 725 (1082)
|+.+| ...+.+. .+.- ....-.-+
T Consensus 288 DI~tG-~lkrsF~---------------------------------------------------~~~~----~~~~WP~f 311 (698)
T KOG2314|consen 288 DIATG-LLKRSFP---------------------------------------------------VIKS----PYLKWPIF 311 (698)
T ss_pred Ecccc-chhccee---------------------------------------------------ccCC----CccccceE
Confidence 66666 2222221 1100 01111236
Q ss_pred EEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee
Q 001415 726 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 805 (1082)
Q Consensus 726 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s 805 (1082)
.||.|+++++....+ .|.||+... ..+.|.++ + .-..|..+.|+|.+.+||.-.
T Consensus 312 rWS~DdKy~Arm~~~-sisIyEtps--------------f~lld~Ks---l--------ki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 312 RWSHDDKYFARMTGN-SISIYETPS--------------FMLLDKKS---L--------KISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EeccCCceeEEeccc-eEEEEecCc--------------eeeecccc---c--------CCccccCcccCCCcceEEEEc
Confidence 799999988877775 677775432 11112111 1 345688899999999998764
Q ss_pred ---C---CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEe----------CCCcEEEEecccceeeeeeccc
Q 001415 806 ---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKLKGH 869 (1082)
Q Consensus 806 ---d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~h 869 (1082)
+ ..+.+..+.+++.+++..-+.-.=..+-|-. .|.+|+.-- .-..+.|+.+.....-...-.-
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 1 3588888888888877665554444566766 677776432 1124555655544322222234
Q ss_pred ccCEEEEEEeCCCCEEEEEeCC---CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE----ecCe
Q 001415 870 SKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQ 942 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~----~d~~ 942 (1082)
...|...+|-|.|..+++-+.. .++.+|.+++.. ....++..... .....+.|+|.|++++++ ..|.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccc
Confidence 5778999999999988776543 579999998522 12222222222 234789999999999883 4678
Q ss_pred EEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeec------CCcEEEEecCC
Q 001415 943 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAAN 994 (1082)
Q Consensus 943 i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~------dg~v~vwd~~~ 994 (1082)
+..+|.+-..+...-.+ .| ...+.+.|.|.|+|++|++. |.--++|++..
T Consensus 519 l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred eEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 99999875343332221 22 35678899999999999985 33455666653
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3.3e-10 Score=128.54 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=129.1
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCC--cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.++.+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence 45567788999999999998555554444 58888988876533 111122345689999
Q ss_pred CCCeEEEE-eCCCe--EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc--EEEEEccCCceeEEe
Q 001415 431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF 505 (1082)
Q Consensus 431 dg~~las~-~~d~~--v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--i~vwd~~~~~~~~~~ 505 (1082)
||+.||.. +.++. |.+||+.+++.. .+..+...+...+|+|||+. ++++...++. |.++|+.+++... +
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence 99988864 55564 777788877543 34455566778999999995 3344444444 6666777776543 3
Q ss_pred ecCCcCeEEEeeeecCCceEEEEecC-CCc--EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEe
Q 001415 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1082)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~ 582 (1082)
..........+|+++ |++|+..+. ++. |.++|+.++.... +... .......|+
T Consensus 346 t~~g~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~s-------------------- 401 (448)
T PRK04792 346 TFEGEQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVA-------------------- 401 (448)
T ss_pred ecCCCCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceEC--------------------
Confidence 222222334566554 456655543 444 4445665543322 1111 111122444
Q ss_pred cCCCCEEEEEe-CCC--eEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 583 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 583 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
|+|+.++..+ .++ .+++++. +|.....+..... .+...+|+|
T Consensus 402 -pdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 402 -PNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG--EVKSPAWSP 446 (448)
T ss_pred -CCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence 4444555443 333 4777776 4555555544322 456677776
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=9.1e-09 Score=104.06 Aligned_cols=259 Identities=12% Similarity=0.194 Sum_probs=174.1
Q ss_pred CCCCccEEEeecCCCeEEEee----CCeEEEEecCC--CeeEE--EECCCCCCeeEEEEecCCCcEEEEEeC-CCcEEEE
Q 001415 785 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIY 855 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~-dg~v~iw 855 (1082)
....++-++++|+++.|.++. +|.|..|.++. |+... .........+.+++++ ++++++++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999888874 36677777764 44432 2222333458899999 8888887765 5799999
Q ss_pred eccc-ceeee--eecccccC----------EEEEEEeCCCCEEEEEe--CCCcEEEEEcCCcccccceeeeccCCCCCCC
Q 001415 856 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 920 (1082)
Q Consensus 856 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 920 (1082)
-++. |.+.. .+..|.+. +.+..|.|++++|++.+ .|. |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 43221 22235554 88899999999999885 344 9999999876655444444333
Q ss_pred CCCcEEEEcCCCcEEEEE--ecCeEEEEEccCc-ceeeeec------cC-CCCcceeEEEEcCCCceEEEeec-CCcEEE
Q 001415 921 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL-ECVKQWV------PR-ESSAPITHATFSCDSQLVYACFL-DATVCV 989 (1082)
Q Consensus 921 ~~v~~~~fspdg~~l~~~--~d~~i~iwd~~~~-~~~~~~~------~~-~h~~~i~~l~~s~dg~~l~t~s~-dg~v~v 989 (1082)
.+.+.|.|+|++++..+. -+++|.+|..+.. ..+..+. .+ .......+|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 556999999999988774 5689999998773 2222221 11 11456778999999999998763 346888
Q ss_pred EecCC--ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC-CcEEEEccCCCCCccccCCCCC
Q 001415 990 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPPPVD 1059 (1082)
Q Consensus 990 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d-g~v~vW~~~~~~~~~~~~~~~~ 1059 (1082)
|.+.. +++. .+. .. ..+...|..+.|.+. +++|++++.+ ..|.++.+....+.+.....+.
T Consensus 271 f~V~~~~g~L~-~~~---~~----~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~ 334 (346)
T COG2706 271 FSVDPDGGKLE-LVG---IT----PTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLGRYA 334 (346)
T ss_pred EEEcCCCCEEE-EEE---Ee----ccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEeccccc
Confidence 87753 3322 222 11 122245668999994 7777777665 4788888877776666654443
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=7e-10 Score=126.91 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=107.1
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.+..+...+...+|||||++|+++...+ ..|.+||+.+++... +....+.+...+|||
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEECC
Confidence 4556788899999999999855555443 358999998876543 222333456789999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEe
Q 001415 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1082)
Q Consensus 431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~ 505 (1082)
||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++|+.+++..+ +
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-e
Confidence 99999854 3444 5888899887643 24456666778899999995 333433444 57777887776543 2
Q ss_pred ecCCcCeEEEeeeecCCceEEEEecC-CC--cEEEEecCCCCc
Q 001415 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGS 545 (1082)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~ 545 (1082)
...........|+++ |+.|+..+. ++ .|.+||+.++..
T Consensus 327 t~~~~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 327 TFVGNYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred ecCCCCccceEECCC--CCEEEEEEccCCceEEEEEECCCCCE
Confidence 212222334456554 456665553 33 477888876543
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.5e-08 Score=107.48 Aligned_cols=237 Identities=10% Similarity=0.064 Sum_probs=150.7
Q ss_pred eecCCCeEEEee-----------CCeEEEEecCCCeeEEEECCCCC-------CeeEEEEecCCCcEEEEEe-C-CCcEE
Q 001415 794 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 853 (1082)
Q Consensus 794 ~s~dg~~l~~~s-----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp~~~~~lasg~-~-dg~v~ 853 (1082)
+||||+.+.++. ++.|.+||..+.+.+..+..... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999877664 36799999999999988874322 245799999 888887666 4 68999
Q ss_pred EEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCC-CCCCCCCCcEEEEcC-C
Q 001415 854 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ-D 931 (1082)
Q Consensus 854 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~fsp-d 931 (1082)
+.|+.+++.+.++.--. ...-...+++..+ +-+.||......+.............+.+ ..+... .- .|++ |
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~--rP-~~~~~d 205 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN--HP-AYSNKS 205 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcccccc--CC-ceEcCC
Confidence 99999999988876422 2222222222222 12234444443333311111111111111 000000 11 4566 9
Q ss_pred CcEEEEEecCeEEEEEccC-----cceeeeeccCC-----CCcceeEEEEcCCCceEEEeec----------CCcEEEEe
Q 001415 932 QIHFLVVHETQLAIFETTK-----LECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFS 991 (1082)
Q Consensus 932 g~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-----h~~~i~~l~~s~dg~~l~t~s~----------dg~v~vwd 991 (1082)
|+++.++.+|.|.+.|+.. ...+..+.... ....+.-+++++||+.+++... .+.|.++|
T Consensus 206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 9999998889999999533 33222221110 1233445999999999888531 25799999
Q ss_pred cCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCC-eEEEEe-cCCcEEEEccCCCC
Q 001415 992 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1049 (1082)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1049 (1082)
..+++.+.++.. | ..+..+.++| |++ +|++.. .++.|.+.|+.+++
T Consensus 286 ~~t~kvi~~i~v------G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGKRLRKIEL------G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCCeEEEEEeC------C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999998772 2 1344799999 567 766555 68899999999987
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=2.2e-09 Score=122.92 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=122.8
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--c
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~ 490 (1082)
+..+...+.+.+|||||++||.+..+ ..|.+||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566689999999999999988654 479999999876432 3445566778999999985 344555444 5
Q ss_pred EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecC-CC--cEEEEecCCCCceeeecCCCCceEEEEEccCCCe
Q 001415 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1082)
Q Consensus 491 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 567 (1082)
|.+||+.++.. ..+..+........|++ +++.|+..+. ++ .|.++|+.+... ..+........
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~---------- 325 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA---------- 325 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc----------
Confidence 88899887764 34444555455566765 4566665543 33 466667654332 12222222222
Q ss_pred eeecccccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001415 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1082)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 640 (1082)
...|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||++|+..+.++
T Consensus 326 -----------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 -----------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -----------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 344555566777766654 7899998876543 332222 235578999999988877654
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.9e-09 Score=111.23 Aligned_cols=293 Identities=12% Similarity=0.133 Sum_probs=183.0
Q ss_pred ceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCe
Q 001415 721 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 800 (1082)
Q Consensus 721 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 800 (1082)
.|.-+.|||+.++|++-+..-...-|+- .....+.+||+.+|...............-.-+.||.|+++
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy 319 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY 319 (698)
T ss_pred CceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCce
Confidence 3566777777777777665433322220 11123466677777655543321112223345789999999
Q ss_pred EEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC-----CCcEEEEecccceeeeeecccccCEEE
Q 001415 801 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-----DSSIQIYNVRVDEVKSKLKGHSKRITG 875 (1082)
Q Consensus 801 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-----dg~v~iwd~~~~~~~~~l~~h~~~V~~ 875 (1082)
+|--..+.|.||+..+..++..-.-....|....|+| .+.+||.=.. -..+.+-.+.+++.+++-.-|.-.=..
T Consensus 320 ~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck 398 (698)
T KOG2314|consen 320 FARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK 398 (698)
T ss_pred eEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE
Confidence 9988889999999887665544444456789999999 8888886442 236777788887777666555433344
Q ss_pred EEEeCCCCEEEEEeC----------CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE--Eec--C
Q 001415 876 LAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE--T 941 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d--~ 941 (1082)
|-|-.+|.+|+.--. =..+.|+.+...+.. ...+. ....|...+|-|.|..+++ +.+ .
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp-ve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~ 470 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-VEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKN 470 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC-ceeee-------cchheeeeeeccCCCeEEEEEcccccc
Confidence 677788888875311 123455655553321 11111 1246788999999998888 332 4
Q ss_pred eEEEEEccC-c---ceeeeeccCCCCcceeEEEEcCCCceEEEee---cCCcEEEEecCCceeeeeeCCCeecCCCCCCC
Q 001415 942 QLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1014 (1082)
Q Consensus 942 ~i~iwd~~~-~---~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1014 (1082)
++.+|.+.+ . +.+..+. ....+.+.|||.|++++.+. ..|.+..+|+.-..+... . .+. |
T Consensus 471 tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~-~----~~e-h--- 537 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT-A----SPE-H--- 537 (698)
T ss_pred ceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc-c----Ccc-c---
Confidence 688998773 2 2333333 34567899999999988765 568899999885332211 1 111 1
Q ss_pred CceeeEEEEeCCCCCeEEEEecCC------cEEEEccCCC
Q 001415 1015 NVHPLVIAAHPQEPNEFALGLSDG------GVHVFEPLES 1048 (1082)
Q Consensus 1015 ~v~~~~~~~~~~d~~~l~s~~~dg------~v~vW~~~~~ 1048 (1082)
.....+-|.|. |++++++++-. .-++|+..-.
T Consensus 538 -~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 538 -FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred -cccccceECCC-CCEEEEeeehhhhccccceEEEEeecH
Confidence 23346889995 89999987654 4556665543
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=1.3e-09 Score=107.92 Aligned_cols=278 Identities=13% Similarity=0.213 Sum_probs=175.0
Q ss_pred cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccce---eeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER---LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1082)
+...+-|.++.|..+|.+ ||+|..+|.|.++.-..... .....|+..+..-... .--.-...|..+.|.++
T Consensus 22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL-----kSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL-----KSLEIEEKINKIRWLDD 95 (433)
T ss_pred echhcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchh-----hhhhhhhhhhhceecCC
Confidence 445678999999999995 99999999999997543222 1111222111110000 00122357889999986
Q ss_pred CC--eEEEEeCCCeEEEEEccCCceee--------------------------------EE-EEeeccccCeeEEEecCC
Q 001415 432 GS--LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QH-LEIDAHVGGVNDIAFSHP 476 (1082)
Q Consensus 432 g~--~las~~~d~~v~iwd~~~~~~~~--------------------------------~~-~~~~~h~~~V~~l~fs~d 476 (1082)
+. .+...+.|.+|++|.+....... +. .--.+|+--|.++.++.|
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 64 56667799999999876432110 00 011357778999999999
Q ss_pred CCceEEEEEeCCCcEEEEEccCCce---eEEeecC-----CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCcee-
Q 001415 477 NKQLCVITCGDDKTIKVWDATNGAK---QYIFEGH-----EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV- 547 (1082)
Q Consensus 477 g~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~- 547 (1082)
+. .++++ +|=.|.+|+++--.. +..++.+ +.-|++..|+|... ++++-.+..|+|++.|++......
T Consensus 176 ~E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 176 KE--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cc--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcc
Confidence 98 45655 577899999874322 1222222 24477888988765 578888889999999998533221
Q ss_pred ---eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECC-CcceEEEEecCCCC-----
Q 001415 548 ---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGL----- 618 (1082)
Q Consensus 548 ---~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~----- 618 (1082)
.+..+..+... -+...--..|..+.|++.|+++++-+. -+|++||+. ..+++.++..|...
T Consensus 252 hsKlfEepedp~~r---------sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSR---------SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred hhhhhccccCCcch---------hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 11111111110 011111125566777777778876443 579999994 55666666544321
Q ss_pred --------CCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 619 --------PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 619 --------~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
..-..++|+.++.++++|+....+++++...|..
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 1113588999999999999999999999776643
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=1.2e-09 Score=125.02 Aligned_cols=162 Identities=17% Similarity=0.099 Sum_probs=110.1
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
.++.+...+...+|||||++++.+...+ ..|++||+.+++... +..+.+.+.+++|+|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFSP 243 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 4556777899999999999755444333 479999998876543 233455677899999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCC--cEEEEEccCCceeEE
Q 001415 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI 504 (1082)
Q Consensus 431 dg~~las~-~~d~--~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~--~i~vwd~~~~~~~~~ 504 (1082)
||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. |+..+ .++ .|.++|+.+++. ..
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~-~~ 316 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEV-RR 316 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCE-EE
Confidence 99988754 3333 5888998887533 24455555667899999994 44433 333 577788777664 34
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecCCC---cEEEEecCCC
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNL 543 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 543 (1082)
+..+...+....|+++ +.+++.++.++ .|.+||+.+.
T Consensus 317 l~~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 317 LTFRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred eecCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCC
Confidence 4445555666677654 46777776665 6888888763
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.1e-09 Score=113.73 Aligned_cols=188 Identities=16% Similarity=0.293 Sum_probs=148.7
Q ss_pred cCCCeEEEee-CCeEEEEecCCCeeEEEECCC---CCCeeEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001415 796 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 852 (1082)
Q Consensus 796 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s------p-------------~~~~~lasg~~dg~v 852 (1082)
|-+.++|... ||.+++|+...++....+... .+..++..|. | .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4455777765 799999999998887776542 2334444442 1 144578889999999
Q ss_pred EEEecccceeeeeec--ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415 853 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 930 (1082)
Q Consensus 853 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 930 (1082)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+..... ..+...... ..+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence 999999999888875 799999999999999999999999999999998844 344444433 4678999999
Q ss_pred CCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCC-----CceEEEee-cCCcEEEEecCC
Q 001415 931 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYACF-LDATVCVFSAAN 994 (1082)
Q Consensus 931 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~d-----g~~l~t~s-~dg~v~vwd~~~ 994 (1082)
||+.++++ .++|++||+++++.+..|. ||.++|+++.|..+ |++++++. .+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99998875 3689999999999999998 99999999999887 77766554 455677886654
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.2e-08 Score=115.80 Aligned_cols=198 Identities=14% Similarity=0.089 Sum_probs=117.8
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc--
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-- 490 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~-- 490 (1082)
+..+...+.+.+|||||++||..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44556789999999999999987543 258889998876432 2222334457899999996 3445566665
Q ss_pred EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCCc--EEEEecCCCCceeeecCCCCceEEEEEccCCCe
Q 001415 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1082)
Q Consensus 491 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 567 (1082)
|.+||+.+++. ..+..+.......+|++++ +.|+..+ .++. |.++|+.++... .+..........
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~-------- 355 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGG-------- 355 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCe--------
Confidence 77788877764 4455555556677777644 5555444 3444 555565543322 111111112223
Q ss_pred eeecccccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-Cc--
Q 001415 568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG-- 641 (1082)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~-- 641 (1082)
+|+|+|++++..+. ++ .|.++|+.+++... +.... ......|+|||+.|+..+.+ +.
T Consensus 356 -------------~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 356 -------------SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred -------------eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 44555556655443 33 46667888776533 32211 12345899999988876644 33
Q ss_pred EEEEEe
Q 001415 642 IKILAT 647 (1082)
Q Consensus 642 i~iwd~ 647 (1082)
+.+++.
T Consensus 419 l~~~~~ 424 (448)
T PRK04792 419 LAAVSI 424 (448)
T ss_pred EEEEEC
Confidence 555665
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.3e-08 Score=116.39 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=122.3
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCC---CeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--c
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~ 490 (1082)
+..+...+...+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 368999999886432 3333445667899999995 334555555 5
Q ss_pred EEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEec-CCC--cEEEEecCCCCceeeecCCCCceEEEEEccCCCe
Q 001415 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1082)
Q Consensus 491 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 567 (1082)
|.+||+.+++.. .+..+........|+++ |+.|+..+ .++ .|.++|+.++.... +........
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~---------- 334 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNA---------- 334 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc----------
Confidence 888898887654 45555555666677654 45555444 344 46666665543221 111111111
Q ss_pred eeecccccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-C--c
Q 001415 568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 641 (1082)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g--~ 641 (1082)
...|+|+++.++..+. ++ .|.+||+.+++... +... . ......|+|||+.++..+.+ + .
T Consensus 335 -----------~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 335 -----------RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred -----------ceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 2345566666665543 22 58889998876533 3221 1 12356899999999877654 3 3
Q ss_pred EEEEEec
Q 001415 642 IKILATS 648 (1082)
Q Consensus 642 i~iwd~~ 648 (1082)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555553
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=9.9e-09 Score=115.52 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=125.4
Q ss_pred CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE---EEeCCC--eEEEEEccCCcee
Q 001415 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEV 455 (1082)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la---s~~~d~--~v~iwd~~~~~~~ 455 (1082)
+.|.+.|.+.+.... +......+.+-+|||||+.++ +...+| .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 357777776654332 334455677889999998633 333333 5777788887644
Q ss_pred eEEEEeeccccCeeEEEecCCCCceEEEEEeC----CCcEEEEEccCC---ceeEEeecCCcCeEEEeeeecCCceEEEE
Q 001415 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFS 528 (1082)
Q Consensus 456 ~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~----d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 528 (1082)
+ +....+.....+|||||+. ++++... +-.+.+|++.++ .......++.+.....+|+| ||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCE-EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEE
Confidence 3 3334445567899999996 3333332 223455777653 33333333333445667765 4466665
Q ss_pred ec-CCCcEEEEec--CCC-CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeC---CCeEEEE
Q 001415 529 TA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFW 601 (1082)
Q Consensus 529 ~~-~dg~i~iwd~--~~~-~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw 601 (1082)
.+ .+|...+|.+ ... .....+......+.... |+|+|+.++..+. ...|.+|
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~---------------------wSPDG~~Laf~~~~~g~~~I~v~ 356 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA---------------------WSPDGKKIAFCSVIKGVRQICVY 356 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCcccee---------------------ECCCCCEEEEEEcCCCCcEEEEE
Confidence 54 4666566643 221 11222222222333344 4555556665432 2479999
Q ss_pred ECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEEC---CCcEEEEEecCC
Q 001415 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN---DNGIKILATSDG 650 (1082)
Q Consensus 602 d~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~---dg~i~iwd~~~~ 650 (1082)
|+.+++........ ..+....|+|||+.|+.... ...|.++++.++
T Consensus 357 dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 357 DLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99988765443321 23567899999998876543 345777777665
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=2e-09 Score=106.78 Aligned_cols=351 Identities=14% Similarity=0.186 Sum_probs=210.2
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc-CCceeEEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEE
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 537 (1082)
.++||.+.|++...-|... -+++.+.|.+++||--. .++--..+. ....+++++.+. .+...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~--~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV--SESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee--ccceEEEEEEecceEEE
Confidence 5789999999888888777 58999999999999543 333323332 123455666554 44478888888899888
Q ss_pred EecCC----CCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEe
Q 001415 538 WLYDN----LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1082)
Q Consensus 538 wd~~~----~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1082)
+.+.. ......+..|...+..+.|+... .++++.+.|..+.---.+.+..+..+.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~---------------------e~V~s~~~dk~~~~hc~e~~~~lg~Y~ 153 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH---------------------EWVLSTGKDKQFAWHCTESGNRLGGYN 153 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc---------------------eeEEEeccccceEEEeeccCCcccceE
Confidence 85532 22333444455555555554443 367777777766544445555444332
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec-CCccceeecccccccccccccccCCCCccccCCCCceeeeccCC
Q 001415 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS-DGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESND 692 (1082)
Q Consensus 614 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 692 (1082)
.... .+++.+.-. +...|...|.+....+. ++..++..+.+|...+. +..+ .+....+.++..|.
T Consensus 154 ~~~~---~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~--~l~W-------d~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 154 FETP---ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT--CLKW-------DPGQRLLFSGASDH 219 (404)
T ss_pred eecc---CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceE--EEEE-------cCCCcEEEeccccC
Confidence 2211 122222222 56667777776665543 33356777888877776 6666 78888999999999
Q ss_pred ceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCccc-c----cCccc
Q 001415 693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA-S----VAPQL 767 (1082)
Q Consensus 693 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~----~~~~~ 767 (1082)
.+.+||+....... ....+|...|..+..-+--+.+++++.||.|.+|+++........-... . ..+..
T Consensus 220 ~vi~wdigg~~g~~------~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTA------YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred ceEEEeccCCccee------eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 99999997643221 2223488889988888888999999999999999998654221111111 0 12223
Q ss_pred cCCC------CcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEe--------cCCCeeEEEECCCCCCeeEE
Q 001415 768 WQPP------SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN--------MMTFKTMATFMPPPPAATFL 833 (1082)
Q Consensus 768 ~~~~------~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd--------~~~~~~~~~~~~~~~~v~~l 833 (1082)
|+.. .--......+. -...+...+-+....+...|..=.+++-| ... .++..+......|+++
T Consensus 294 wn~~~m~~~k~~glr~h~crk--cg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItam 370 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRK--CGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAM 370 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhh--hhhhcCcccccCccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEE
Confidence 3221 11111100000 01122222222222233333222344433 222 3344444445578999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeccc
Q 001415 834 AFHPQDNNIIAIGMDDSSIQIYNVRV 859 (1082)
Q Consensus 834 ~~sp~~~~~lasg~~dg~v~iwd~~~ 859 (1082)
.+.. .-.+|++++.|..|+|||+..
T Consensus 371 hlqe-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 371 HLQE-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred Ehhh-hccceeecCCceEEEEEechh
Confidence 9988 777999999999999999864
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.8e-09 Score=110.36 Aligned_cols=194 Identities=14% Similarity=0.201 Sum_probs=146.4
Q ss_pred ecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec------C------------CCCceEEEEEeCCCc
Q 001415 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS------H------------PNKQLCVITCGDDKT 490 (1082)
Q Consensus 429 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs------~------------dg~~~~l~s~s~d~~ 490 (1082)
.|.+.|+|....||.++||+...++....+.....-++.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999887544222222223444555552 1 122237888889999
Q ss_pred EEEEEccCCceeEEee--cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCee
Q 001415 491 IKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1082)
Q Consensus 491 i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 568 (1082)
|.++++..|+....+. .|.+.|.++.++... ..|.+++.|+.+..|+.........+......+.+++++|||.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-- 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-- 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--
Confidence 9999999999888876 599999999876443 5899999999999999988777777777777777777777765
Q ss_pred eecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC-----CCEEEEE-ECCCcE
Q 001415 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVS-TNDNGI 642 (1082)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d-----g~~l~~~-~~dg~i 642 (1082)
.+++++ +.|++||+++++.+..+.+|.. +|++++|..+ |.++.++ ..+..+
T Consensus 158 -------------------~l~~as--~~ik~~~~~~kevv~~ftgh~s--~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 158 -------------------ILLTAS--RQIKVLDIETKEVVITFTGHGS--PVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred -------------------EEEecc--ceEEEEEccCceEEEEecCCCc--ceEEEEEEEeccccccceeeeccccccce
Confidence 666665 6799999999999999998876 7999999876 6666554 445567
Q ss_pred EEEEecC
Q 001415 643 KILATSD 649 (1082)
Q Consensus 643 ~iwd~~~ 649 (1082)
.+|-...
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7776544
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.08 E-value=6.4e-08 Score=108.81 Aligned_cols=304 Identities=12% Similarity=0.080 Sum_probs=174.1
Q ss_pred eEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001415 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1082)
Q Consensus 524 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1082)
..+++++.++.|..+|..+++................ .++..+++++.++.+..+|.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~-----------------------v~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG-----------------------ADGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE-----------------------EcCCEEEEEcCCCEEEEEEC
Confidence 4788888899999999888777665544432111111 12346888888999999999
Q ss_pred CCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCC
Q 001415 604 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVK 683 (1082)
Q Consensus 604 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 683 (1082)
.+|+.+......... ...... .+..++.++.++.+..||..+++.... ........ .+......... +.
T Consensus 123 ~tG~~~W~~~~~~~~--~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~-----~~~~~~sp~~~-~~ 191 (377)
T TIGR03300 123 EDGKELWRAKLSSEV--LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPAL-----TLRGSASPVIA-DG 191 (377)
T ss_pred CCCcEeeeeccCcee--ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCce-----eecCCCCCEEE-CC
Confidence 999998776543321 111111 345777788899999999998843322 22111100 00000000011 23
Q ss_pred ceeeeccCCceeEEEecccCCCCccccccccCcccccc---e-eEEEEccCCceeeecccCCeEEEeeccccccCCCCCc
Q 001415 684 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK---I-SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 759 (1082)
Q Consensus 684 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---i-~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 759 (1082)
.++.+..++.+..+|..++...-....-.......... + ....+ .+..+++++.++.+..+|...++
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~------- 262 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR------- 262 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc-------
Confidence 56677777888888876543221111000000000000 0 11111 24467777788888888764322
Q ss_pred ccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-eCCeEEEEecCCCeeEEEECCCC-CCeeEEEEec
Q 001415 760 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPP-PAATFLAFHP 837 (1082)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp 837 (1082)
.+|....+ ...... .++..+.++ .+|.+..+|..+++.+....... ....+...
T Consensus 263 ------~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-- 318 (377)
T TIGR03300 263 ------VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-- 318 (377)
T ss_pred ------EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--
Confidence 23332210 011122 233444444 57999999999998876653222 22233333
Q ss_pred CCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEE-EEEeCCCCEEEEEeCCCcEEEE
Q 001415 838 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW 897 (1082)
Q Consensus 838 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vw 897 (1082)
.+..|++++.+|.|+++|..+|+.+..++.+...+.. .++. ++ .|+.++.||.|..+
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 2347788999999999999999999888866654433 3333 33 57888899988765
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=2e-08 Score=97.88 Aligned_cols=199 Identities=12% Similarity=0.138 Sum_probs=135.4
Q ss_pred ccEEEeecCCCeEEEee-CCeEEEEecCCCee--EEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc-cceeee
Q 001415 789 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 864 (1082)
Q Consensus 789 i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 864 (1082)
..++.|++.+.-++++. +|.+.+-+...... ++..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45678888888877775 58888666554443 347889999999999998788899999999999999998 445444
Q ss_pred e-ecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC--CcEEEEEec
Q 001415 865 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHE 940 (1082)
Q Consensus 865 ~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd--g~~l~~~~d 940 (1082)
. .+-|...|.+|.-+| ++.++++|+.|..|++||.+.-.. ....... .++|-.+..+|. ++.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k------Pl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK------PLFKAKV--GGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC------ccccCcc--ccceEEEEecchhhhHHHHHHHh
Confidence 3 567889999998875 578999999999999999986221 1111111 167889999985 445556665
Q ss_pred CeEEEEEccCccee---eeeccCCCCcceeEEEEcCCCceEEEee-cCCcEE-EEecCCc
Q 001415 941 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANL 995 (1082)
Q Consensus 941 ~~i~iwd~~~~~~~---~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~-vwd~~~~ 995 (1082)
+..+|.+.+.+... .......|.+-...-.|.....+|||++ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 66666666544332 1111124444444444533335688865 566644 6755444
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=1.4e-07 Score=117.22 Aligned_cols=257 Identities=9% Similarity=0.079 Sum_probs=160.7
Q ss_pred ccEEEeecCCC-eEEEee-CCeEEEEecCCCeeEEEECC--C------------CCCeeEEEEecCCCcEEEE-EeCCCc
Q 001415 789 VPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--P------------PPAATFLAFHPQDNNIIAI-GMDDSS 851 (1082)
Q Consensus 789 i~~l~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~v~~l~~sp~~~~~las-g~~dg~ 851 (1082)
...+++++++. ++++-. .+.|++||... ..+..+.+ . -.....+++++ ++..|++ -..++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 35688987644 444444 57899999864 44433332 1 12367899999 5554444 445678
Q ss_pred EEEEecccceeeeeeccc-----------------ccCEEEEEEeC-CCCEEEEEeCCCcEEEEEcCCcccccce---ee
Q 001415 852 IQIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 910 (1082)
Q Consensus 852 v~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~ 910 (1082)
|+++|..++.. .++.+- -..-+.++|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999877643 333110 11236799999 5666677778889999998875431100 00
Q ss_pred eccCCCC---CCCCCCcEEEEcCCCcEEEE--EecCeEEEEEccCcceeeee-----------ccC--------CCCcce
Q 001415 911 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPR--------ESSAPI 966 (1082)
Q Consensus 911 ~~~~~~~---~~~~~v~~~~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~-----------~~~--------~h~~~i 966 (1082)
....+.. ........++|+|+|..|.+ ..++.|++||+.++...... ... ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0000100 01134578999999986655 45689999999876532110 000 011235
Q ss_pred eEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCe-ecCCCC--CCCCceeeEEEEeCCCCCeEEEEecCCcEEEE
Q 001415 967 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus 967 ~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~gh--~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
..++++++|..+++-+.+++|++||..++.......... ....|. .+.--.+..+++++ +|+++++-+.+++|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 689999999988888899999999999887764432110 001110 01112466788888 58888888899999999
Q ss_pred ccCCCC
Q 001415 1044 EPLESE 1049 (1082)
Q Consensus 1044 ~~~~~~ 1049 (1082)
|+.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 999876
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.8e-09 Score=113.09 Aligned_cols=290 Identities=15% Similarity=0.115 Sum_probs=186.7
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC-cee---eEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~-~~~---~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i 491 (1082)
+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+ ....++..|..+|.++.|-.+-+ +++++ |+.|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence 7899999999988888889999999999999998742 222 24457889999999999999887 56665 8999
Q ss_pred EEEEccCCceeEEeec--CCcCeEEEeeeecCCceEEEEe-cCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCee
Q 001415 492 KVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1082)
Q Consensus 492 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~ 568 (1082)
++||.--|+.+..+.. ..+.+..+...++-+...+++| +...+|+++|.+..+-...+..... |
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~----- 873 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------P----- 873 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC--------C-----
Confidence 9999888877653321 1222222222244344555555 6789999999886554433221110 0
Q ss_pred eecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE-EEe
Q 001415 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI-LAT 647 (1082)
Q Consensus 569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~i-wd~ 647 (1082)
.....+.+++..+.|+.++++-.+|.|.+.|.++|+.+..+..... ....++ .|..+.|+....|.++.+ |..
T Consensus 874 ---~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 874 ---GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred ---CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 0112456777788888999999999999999999999887764322 122222 356677777778888888 877
Q ss_pred cCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccC----CCCccccccccCccccccee
Q 001415 648 SDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELS----EPNQCRSLRLPENLRATKIS 723 (1082)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~ 723 (1082)
.++....+ ......+. .| ...-|..+++....+.+.+|.-.... ...+++.-. ..+..+
T Consensus 948 ldgimh~q-~kpppepa-----hf------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~-----f~G~lT 1010 (1034)
T KOG4190|consen 948 LDGIMHLQ-DKPPPEPA-----HF------LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDE-----FPGTLT 1010 (1034)
T ss_pred cCCeeeec-cCCCCcch-----hh------hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccc-----cCCccc
Confidence 66622221 11111110 11 12234556666666667776533211 111222222 345677
Q ss_pred EEEEccCCceeeecccCCeEEE
Q 001415 724 RLIFTNSGNAILALASNAIHLL 745 (1082)
Q Consensus 724 ~~~~s~~~~~l~~~~~d~~i~i 745 (1082)
+++.-|-...++++...|.|.+
T Consensus 1011 ala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1011 ALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeeeccccchhhccCCCCceee
Confidence 7888887777888888777764
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=3.3e-07 Score=103.01 Aligned_cols=192 Identities=13% Similarity=0.024 Sum_probs=117.3
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
++..+.+++.++.|.-+|..+|+.+-.. .-.......++. ++. .++.++.++.+..+|..+|+.+...... +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~---~~~~~~~~~p~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~-~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRV---DLDERLSGGVGA--DGG--LVFVGTEKGEVIALDAEDGKELWRAKLS-S 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeee---cCCCCcccceEE--cCC--EEEEEcCCCEEEEEECCCCcEeeeeccC-c
Confidence 4668888888999999999999876532 211111122222 345 4777888999999999999998766532 2
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
.+.+.... .+..++.++.++.+..||.++++............. ...... .... +..++
T Consensus 136 ~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---~~~~~s-------------p~~~--~~~v~ 194 (377)
T TIGR03300 136 EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---LRGSAS-------------PVIA--DGGVL 194 (377)
T ss_pred eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee---ecCCCC-------------CEEE--CCEEE
Confidence 22221111 123677788899999999998877665544322111 000000 0011 12577
Q ss_pred EEeCCCeEEEEECCCcceEEEEecCCCC--CCc---CeEEEcC--CCCEEEEEECCCcEEEEEecCCc
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDADGGL--PAS---PRIRFNK--DGCLLAVSTNDNGIKILATSDGI 651 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i---~~~~~s~--dg~~l~~~~~dg~i~iwd~~~~~ 651 (1082)
.+..++.+..+|..+|+.+......... ..+ ..+.-+| .+..+++++.+|.+..||..+++
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 7788899999999999877654321110 000 0011111 35678888889999999988773
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.1e-07 Score=106.18 Aligned_cols=156 Identities=9% Similarity=0.012 Sum_probs=97.2
Q ss_pred CCceEEEEecCCCeEEEEEcC---CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 359 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 359 ~~v~~~~~spdg~~llasgs~---dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
+.+....|||||+++++..+. +..|.++|+.+|+... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 378899999999864553333 3569999998887654 22344556778899999988
Q ss_pred EEEeC---CCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCC--cEEEEEccCCceeEEeecCCc
Q 001415 436 GVAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 436 as~~~---d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
+.... +..|.++|+.+++.. .+..+.+......|+|||+.+++.+ ...+ .|.+.|+.+|+..+.... ..
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccC-CC
Confidence 76532 346888888877633 2433443344568999999743333 3333 588888887776443321 11
Q ss_pred CeEEEeeeecCCceEEEEecCC---------CcEEEEecCCCC
Q 001415 511 PVYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 544 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~ 544 (1082)
. ...|+| +|+.|+..+.. ..|.+.|++++.
T Consensus 322 ~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 N--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred c--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1 235655 44566555433 256666776554
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=3.7e-08 Score=96.04 Aligned_cols=191 Identities=19% Similarity=0.121 Sum_probs=134.0
Q ss_pred CCCceEEEEe---cCCCeEEEEEcCCCcEEEEEccccceeee-eceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415 358 GSSPMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1082)
Q Consensus 358 ~~~v~~~~~s---pdg~~llasgs~dg~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1082)
++.+..|.|+ -+|...++-+..+|.|.++.......... +.+.. .+-....-.++.|++.|.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 4556666665 35554567777788888887654322211 11100 000011345788999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEcc-CCceeEE-eecCCcC
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP 511 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~-~~~~~~~-~~~h~~~ 511 (1082)
.++++..+|.+.+-+..... +....++++|.-..+...|+..... ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999999855544432 3344478899999999999987776 89999999999999998 4555544 5668899
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCC
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 565 (1082)
|.++.-++ +.+.+|++|+.|..|++||.++..+...-....+.|..+...|.-
T Consensus 213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 99987655 355799999999999999999766665555555677777766653
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=8.8e-09 Score=122.74 Aligned_cols=215 Identities=12% Similarity=0.248 Sum_probs=154.0
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccc
Q 001415 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1082)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1082)
.+.....++...-|..+.+..+..- +...+.++.-+|...+-++|+.||.+++|....+
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~~~k~----~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~----------------- 2240 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVMIKH----PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG----------------- 2240 (2439)
T ss_pred cCCcccCCccccceecccceeEeec----ccCceeeecCCCCCceEEecCCCceEEEEeccCC-----------------
Confidence 3444444555555554433332222 1235777888888888999999999999986544
Q ss_pred ccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415 668 SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 747 (1082)
Q Consensus 668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~ 747 (1082)
..|..|+.. ...+++.+.|+.+|+....+..||.+.+|.
T Consensus 2241 ------------------------~~v~~~rt~-----------------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2241 ------------------------QQVVCFRTA-----------------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ------------------------CeEEEeecc-----------------CcchhhhhhhcccCCceeeeccCCceeecc
Confidence 234445443 236788899999999999999999999996
Q ss_pred ccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee----CCeEEEEecCC-CeeEEE
Q 001415 748 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT-FKTMAT 822 (1082)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s----dg~i~iwd~~~-~~~~~~ 822 (1082)
..... ....+.|......+.|-. ..+++++ ++.+.+||.-- +..-..
T Consensus 2280 ~~pk~--------------------------~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2280 ASPKP--------------------------YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred cCCcc--------------------------eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee
Confidence 54111 111233777788888866 5666664 36799999752 222222
Q ss_pred ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCc
Q 001415 823 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 902 (1082)
Q Consensus 823 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 902 (1082)
-..|.+.++++++.| ..++|++|+.+|.|++||++..+++..++. +. ...++++++..|.|+||++...
T Consensus 2332 ~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2332 HTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 277999999999999 899999999999999999998887766664 33 5678999999999999999884
Q ss_pred c
Q 001415 903 E 903 (1082)
Q Consensus 903 ~ 903 (1082)
.
T Consensus 2401 ~ 2401 (2439)
T KOG1064|consen 2401 G 2401 (2439)
T ss_pred c
Confidence 3
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=3.7e-09 Score=125.84 Aligned_cols=196 Identities=19% Similarity=0.337 Sum_probs=154.5
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
+-..|.++.=+|...+ .+||+.||.|++|.+..++.+.. |+ ..|. ..|+.+.|+..|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence 5588999999999995 88999999999999988877653 22 2233 7899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe---CCCcEEEEEccC-C--ceeEEeecCCc
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-G--AKQYIFEGHEA 510 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s---~d~~i~vwd~~~-~--~~~~~~~~h~~ 510 (1082)
.+..||.+.+|.+.. + .....+.|........|-. . ++++++ .++.+.+||..- + .++. +.|.+
T Consensus 2268 i~d~dg~l~l~q~~p-k---~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP-K---PYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred eeccCCceeecccCC-c---ceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence 999999999999883 2 3336778999999999976 3 567664 567899999653 2 2333 78999
Q ss_pred CeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
.++++++.|.. ++|++|+.+|.|++||++..+....+.. ++ ...+|+
T Consensus 2338 gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2338 GATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFV 2384 (2439)
T ss_pred CceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheee
Confidence 99999987665 7999999999999999987655544432 11 123799
Q ss_pred EEeCCCeEEEEECCCcceEEEEec
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDA 614 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1082)
+++..|.|+||++.....+..+..
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ccCcccceEEEEccccchhhcCch
Confidence 999999999999998877776653
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=5.6e-07 Score=111.94 Aligned_cols=274 Identities=14% Similarity=0.187 Sum_probs=164.1
Q ss_pred eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe-C
Q 001415 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-S 440 (1082)
Q Consensus 362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~ 440 (1082)
..+++++++..++++-+.++.|.+||.... .+.... ....... .....-..+-.....+++++++..|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig----~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIG----STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEc----cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 578999865547888888899999998643 332100 0000000 00000111223468899999988776665 4
Q ss_pred CCeEEEEEccCCceeeEEEEeec--c---------------ccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415 441 RHIVQIYSYHGGDEVRQHLEIDA--H---------------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 441 d~~v~iwd~~~~~~~~~~~~~~~--h---------------~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~ 503 (1082)
++.|+++|..++... ++.+ . -..-..++|+|++.. ++++.+.++.|++||..++...
T Consensus 645 n~~Ir~id~~~~~V~----tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~- 718 (1057)
T PLN02919 645 NHALREIDFVNETVR----TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR- 718 (1057)
T ss_pred CceEEEEecCCCEEE----EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-
Confidence 567999998876432 1211 0 112467999995543 6777788899999998877543
Q ss_pred EeecC---------------CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCc-eEEEEEc-cCCC
Q 001415 504 IFEGH---------------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYS-ADGT 566 (1082)
Q Consensus 504 ~~~~h---------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s-~d~~ 566 (1082)
.+.+. -.....++++++.+ .++++-+.++.|++||+.+............. .....|. .+|.
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 22211 11234577765432 35666677899999999865432211100000 0000111 0110
Q ss_pred eeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecC-----------CCCCCcCeEEEcCCCCEEEE
Q 001415 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----------GGLPASPRIRFNKDGCLLAV 635 (1082)
Q Consensus 567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~i~~~~~s~dg~~l~~ 635 (1082)
. ..........++++++|+.+++-..++.|++||..++......... ........++++++|+++++
T Consensus 798 g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 798 G--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred h--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0 0000112346888999988888889999999999887665433210 11124578999999998888
Q ss_pred EECCCcEEEEEecCC
Q 001415 636 STNDNGIKILATSDG 650 (1082)
Q Consensus 636 ~~~dg~i~iwd~~~~ 650 (1082)
-+.++.|++||+.++
T Consensus 876 Dt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 876 DTNNSLIRYLDLNKG 890 (1057)
T ss_pred ECCCCEEEEEECCCC
Confidence 889999999999876
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=1.5e-08 Score=103.42 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=114.4
Q ss_pred CceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE-
Q 001415 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA- 438 (1082)
Q Consensus 360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 438 (1082)
.++.+.++|+|+ |+|++..+....+.++..... ..+.++... + ...-+++.|-.+.....++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~---------v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVSC---------V---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEee---------c---ccCcceeeeeeccceEEEEe
Confidence 445566778888 688888887777777755433 111111110 1 1123344444444444444
Q ss_pred --eCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEE
Q 001415 439 --YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSV 515 (1082)
Q Consensus 439 --~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~ 515 (1082)
+....+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|+|-....--.+..+ -||+..|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667776655433 3669999999999999998 8999999999999887666555554 5799999999
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeec
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 550 (1082)
++.++ ..|+++|.|++|++||+.+++...++.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 97543 579999999999999999988875444
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3.9e-07 Score=100.92 Aligned_cols=114 Identities=12% Similarity=0.312 Sum_probs=86.2
Q ss_pred CCCceEEEEecCCCeEEEEEcC----CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCC
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~----dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1082)
.+.-+-..|+|... ++|+++. .|.|-||- ++|+...... .. -.+++++|.|..-
T Consensus 15 davsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P---~hatSLCWHpe~~ 72 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YP---VHATSLCWHPEEF 72 (1416)
T ss_pred cccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cc---eehhhhccChHHH
Confidence 34445567999998 5777754 47788874 4454322110 11 1456799999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1082)
Q Consensus 434 ~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~ 498 (1082)
.||.|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|....
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HHhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence 99999999999999988765332 4567999999999999999 899999999999998764
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=7.5e-07 Score=99.59 Aligned_cols=189 Identities=9% Similarity=0.028 Sum_probs=121.7
Q ss_pred CccEEEeecCCCe-EEEee-C---CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEE-EEeCC--CcEEEEeccc
Q 001415 788 AVPCFALSKNDSY-VMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA-IGMDD--SSIQIYNVRV 859 (1082)
Q Consensus 788 ~i~~l~~s~dg~~-l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la-sg~~d--g~v~iwd~~~ 859 (1082)
......|||||+. ++..+ + ..|.++|+.+++...... ..+......|+| |++.|+ +.+.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 5668899999985 55443 2 459999998887655443 455567788999 665554 44434 4688888877
Q ss_pred ceeeeeecccccCEEEEEEeCCCCEEEEEeCC-C--cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415 860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-S--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 936 (1082)
Q Consensus 860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 936 (1082)
++. ..+..+........|+|||+.|+..+.. + .|.+.|+.+++..+ +. ..+. ....|||||++|+
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--lt--~~g~-------~~~~~SPDG~~Ia 334 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ--VV--FHGK-------NNSSVSTYKNYIV 334 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe--Cc--cCCC-------cCceECCCCCEEE
Confidence 764 4454444434456899999988776643 3 57777887755321 11 1111 1248999999998
Q ss_pred EE-ec---------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-Cc--EEEEecCC
Q 001415 937 VV-HE---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAAN 994 (1082)
Q Consensus 937 ~~-~d---------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-g~--v~vwd~~~ 994 (1082)
.. .. ..|.+.|+.++.... +...+ ......|||||++|+..+.+ +. +.+.+++.
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 83 22 267888888776533 33222 23357899999988777643 22 55556544
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=1.5e-06 Score=85.63 Aligned_cols=206 Identities=17% Similarity=0.178 Sum_probs=136.9
Q ss_pred EEeecCCCeEEEeeCCeEEEEecCCC--eeEEE---ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee
Q 001415 792 FALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 866 (1082)
Q Consensus 792 l~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 866 (1082)
++.+.||++||+.-|..|.|=..++. ..+.+ -+.....-+.++||| |+.+||.+...|+|++||+...++. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 57789999999999988888765532 12222 222334568899999 9999999999999999998864432 33
Q ss_pred cc-------cccCEEEEEEeCCC------CEEEEEeCCCcEEEEEcCCccccc---ceeeeccCCCCCCCCCCcEEEEcC
Q 001415 867 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQ 930 (1082)
Q Consensus 867 ~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~fsp 930 (1082)
.. -...|.+|.|.+-. ..|+...-+|.++-|-+..+.... ..... +..+.+ .+|.++.++|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp--~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYP--HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCC--CceeEEEEcC
Confidence 21 23567778775432 246666678888877764321111 11111 112222 6789999999
Q ss_pred CCcEEEEEe-----cC-------eEEEEEccCcceeee---------------------e-----c-cCCCCcceeEEEE
Q 001415 931 DQIHFLVVH-----ET-------QLAIFETTKLECVKQ---------------------W-----V-PRESSAPITHATF 971 (1082)
Q Consensus 931 dg~~l~~~~-----d~-------~i~iwd~~~~~~~~~---------------------~-----~-~~~h~~~i~~l~~ 971 (1082)
..++|+++. ++ .+.-|.+-++...-. . . .......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 998888731 11 366666533221000 0 0 0112567899999
Q ss_pred cCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 972 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 972 s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
||||+.||+...+|.|.+|++.+.++.....
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999999887765
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=3e-08 Score=104.08 Aligned_cols=249 Identities=11% Similarity=0.111 Sum_probs=157.4
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEcccc-ceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1082)
...+|+..|.+++--.+... +++++.|.+|++|.+... ..+.+. ..+. .+..|+.+|.++.|-.|
T Consensus 730 nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~ts------------aCQf-TY~aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTS------------ACQF-TYQAHKKPIHDIGFLAD 795 (1034)
T ss_pred cccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccc------------eeee-EhhhccCcccceeeeec
Confidence 45569999999876666553 889999999999998642 222210 0111 36789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCC-CCceEEEEEeCCCcEEEEEccCCceeEEee----
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYIFE---- 506 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~d-g~~~~l~s~s~d~~i~vwd~~~~~~~~~~~---- 506 (1082)
-+++|++ ||.|.+||.--+..+.+...-..| +.+..+.--++ .+.++++.++...+|+++|.+.++-...++
T Consensus 796 lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 796 LRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred cceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 9999876 788999999887765432222222 23333333343 333355556889999999999887666554
Q ss_pred -cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCC
Q 001415 507 -GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1082)
Q Consensus 507 -~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~ 585 (1082)
+..+.+.++++.+. |+.++++-..|.|.+.|.+++.....+....-....++ .|.
T Consensus 873 ~~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla----------------------aps 928 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADK--GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA----------------------APS 928 (1034)
T ss_pred CCCchheeEEEeccC--cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc----------------------Cch
Confidence 33455778877654 46899999999999999988765544333222111111 122
Q ss_pred CCEEEEEeCCCeEEE-EECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001415 586 KNRFLAAGDDFSIKF-WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1082)
Q Consensus 586 ~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd 646 (1082)
...++....|.++.+ |-...|......+.... +. --.-.-|.-|+++.....+.+|.
T Consensus 929 dq~L~~saldHslaVnWhaldgimh~q~kpppe--pa--hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 929 DQALAQSALDHSLAVNWHALDGIMHLQDKPPPE--PA--HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hHHHHhhcccceeEeeehhcCCeeeeccCCCCc--ch--hhhhccCceeEEeccCcEEEEEe
Confidence 234566667788888 87766655544432211 10 00111245566666666666664
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.3e-06 Score=84.20 Aligned_cols=237 Identities=13% Similarity=0.086 Sum_probs=148.6
Q ss_pred CeEEEee-CCeEEEEecCCCeeE-EEECCCCCCee---EEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCE
Q 001415 799 SYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAAT---FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 873 (1082)
Q Consensus 799 ~~l~~~s-dg~i~iwd~~~~~~~-~~~~~~~~~v~---~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 873 (1082)
.+||.|+ .|.+.+|...+.+.. .....+...|+ ..+-+ ..-+..++.|.++++.++..+.....+.-..-.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeeccccce
Confidence 4677775 599999999865443 33333333332 22222 2235557788888888887654332222111238
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc
Q 001415 874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 952 (1082)
Q Consensus 874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~ 952 (1082)
.++++++|++++++.+....|..|.++.......+....... ..-.+..|+.....+|+ ..||.+.|||++...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 899999999999999999999999998743222221111111 23378899998888888 689999999998765
Q ss_pred eeeeec---cCCCCcceeEEEEcCCCc--eEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCC
Q 001415 953 CVKQWV---PRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027 (1082)
Q Consensus 953 ~~~~~~---~~~h~~~i~~l~~s~dg~--~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d 1027 (1082)
...... -+.|.+.+..+.||+-|. +|+..-.-+.+.|-|+.+++-...+.+..-.-..|....+. .-.|+. +
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~ 313 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-E 313 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-C
Confidence 543332 235899999999998665 35555556889999999999887776443332223222233 344554 3
Q ss_pred CCeEEEEecCCcEEEEccCC
Q 001415 1028 PNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1028 ~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
+.-+.+..++. +.-|++.+
T Consensus 314 n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 314 NESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred Ccccccccchh-hheeeccc
Confidence 44444444332 23444433
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=4e-06 Score=85.66 Aligned_cols=247 Identities=15% Similarity=0.186 Sum_probs=150.8
Q ss_pred CceEEEEecCCCeEEEEEcCCCc-EEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE
Q 001415 360 SPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1082)
Q Consensus 360 ~v~~~~~spdg~~llasgs~dg~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1082)
....++.+|+....+|.+-.-|+ ..+||..+++.+.... +.....+.|| -+|||||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 34568889966667888887775 7899999998876421 1122236666 4799999999986
Q ss_pred e-----CCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe----------------CCCcEEEEEcc
Q 001415 439 Y-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG----------------DDKTIKVWDAT 497 (1082)
Q Consensus 439 ~-----~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s----------------~d~~i~vwd~~ 497 (1082)
- ..|.|-|||... .+.+..++..|.-.-..+.+.|||+.+.++-|+ .+-++.+-|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 358899999993 234445788887777889999999864444443 23457777888
Q ss_pred CCceeEE--e--ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415 498 NGAKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1082)
Q Consensus 498 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 573 (1082)
+|+.+.. + .-|...+..+++..++ ..++..-..|.-. ...++.-....+.....+...++.. ..-
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~-----~~~PLva~~~~g~~~~~~~~p~~~~----~~l 215 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPG-----DAPPLVALHRRGGALRLLPAPEEQW----RRL 215 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCC-----ccCCeEEEEcCCCcceeccCChHHH----Hhh
Confidence 8888766 4 3377788888875443 3333322222100 0000110000111111111111000 011
Q ss_pred ccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcE
Q 001415 574 KRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 642 (1082)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i 642 (1082)
.+.+.+++++.++..+++.+ .-+.+.+||..+++.+...... .++.++-.+++ ++++.+ .|.+
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccE
Confidence 23566777888877776655 6788999999999998877644 35667777776 554443 4544
No 292
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=4.5e-05 Score=73.66 Aligned_cols=145 Identities=9% Similarity=0.006 Sum_probs=95.6
Q ss_pred EEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec
Q 001415 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1082)
Q Consensus 471 l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 550 (1082)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -..++.+-+.. -+ ++++.|+..|.+.+-+..++.+...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeee
Confidence 344456665 78889999999999999998875432 22333333322 13 479999999999999999887766554
Q ss_pred CCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC
Q 001415 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630 (1082)
Q Consensus 551 ~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg 630 (1082)
..+.--. ....++++..+.+++.|+..+..|..+..++...+..+.. ..+-++.|-.
T Consensus 91 ~~~~vk~---------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILETVKV---------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGD 147 (354)
T ss_pred ehhhhcc---------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCC
Confidence 3322111 1234455668999999999999999999999887766552 3344556623
Q ss_pred CEEEEEECCCcEE
Q 001415 631 CLLAVSTNDNGIK 643 (1082)
Q Consensus 631 ~~l~~~~~dg~i~ 643 (1082)
..|+.+...|.+.
T Consensus 148 ~sly~a~t~G~vl 160 (354)
T KOG4649|consen 148 GSLYAAITAGAVL 160 (354)
T ss_pred ceEEEEeccceEE
Confidence 3344444455543
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=7.9e-06 Score=83.59 Aligned_cols=208 Identities=14% Similarity=0.095 Sum_probs=143.1
Q ss_pred CccEEEeec-CCCeEEEeeC-C-eEEEEecCCCeeEEEECCCCCCe--eEEEEecCCCcEEEEEeC-----CCcEEEEec
Q 001415 788 AVPCFALSK-NDSYVMSASG-G-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGMD-----DSSIQIYNV 857 (1082)
Q Consensus 788 ~i~~l~~s~-dg~~l~~~sd-g-~i~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasg~~-----dg~v~iwd~ 857 (1082)
....++.+| ++..++.+.. | ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 5556666653 4 48999999999998887655543 3578999 8888887543 579999999
Q ss_pred c-cceeeeeecccccCEEEEEEeCCCCEEEEEeC------------------CCcEEEEEcCCcccccceeeeccCCCCC
Q 001415 858 R-VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTP 918 (1082)
Q Consensus 858 ~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 918 (1082)
. +.+.+.++..|.-.-..+.+.|||+.|+.+-. +..+..-|..+++......+.. .-+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~- 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ- 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc-
Confidence 9 66788888887766678889999988887622 2235555666665433222211 1122
Q ss_pred CCCCCcEEEEcCCCcEEEEEe-cC-------eEEEEEccCcceeeeeccC-----CCCcceeEEEEcCCCceEEEee-cC
Q 001415 919 TAQSDTRVQFHQDQIHFLVVH-ET-------QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACF-LD 984 (1082)
Q Consensus 919 ~~~~v~~~~fspdg~~l~~~~-d~-------~i~iwd~~~~~~~~~~~~~-----~h~~~i~~l~~s~dg~~l~t~s-~d 984 (1082)
.++..+++.++|..++... .+ -+.+++. ++.+..+... .-..-+-+|+++++|.++++++ .-
T Consensus 163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 5689999999999887742 11 2444443 3323322211 1246789999999999886665 67
Q ss_pred CcEEEEecCCceeeeeeC
Q 001415 985 ATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 985 g~v~vwd~~~~~~~~~~~ 1002 (1082)
|.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 889999999999997665
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=8.6e-08 Score=98.02 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=106.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE----EecCeEEEEEc
Q 001415 873 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET 948 (1082)
Q Consensus 873 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~----~~d~~i~iwd~ 948 (1082)
+..+..++++++||.+..+....++++..... ..++....... ..-+.+.|-.+...... +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677888888888777766777665432 12222222211 12355666665554444 23356777776
Q ss_pred cCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCC
Q 001415 949 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1028 (1082)
Q Consensus 949 ~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~ 1028 (1082)
..+.+...+ ||-+.++.++||||+++|+++..|..|+|-.+..--.+..+. -|| .+-|..+++ - ++
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH-~eFVS~isl--~--~~ 205 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGH-KEFVSTISL--T--DN 205 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------ccc-Hhheeeeee--c--cC
Confidence 666655443 899999999999999999999999999998877665554433 255 333443334 3 46
Q ss_pred CeEEEEecCCcEEEEccCCCC
Q 001415 1029 NEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1029 ~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+.|++||.|++|++||+.+|.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 789999999999999999998
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=2.3e-07 Score=101.33 Aligned_cols=302 Identities=14% Similarity=0.171 Sum_probs=183.9
Q ss_pred cCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC--
Q 001415 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG-- 432 (1082)
Q Consensus 355 ~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg-- 432 (1082)
+.-..++.++.++|.|+- +|.++.-|. .+-|+...-...+ | +..-..-.|-.+.|||..
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPHPAK 81 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCce-----e------------eeccCcchhcceecccCCCC
Confidence 445688999999999996 777765554 3445543211110 0 011112246677888733
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC-ceeEEeecCCcC
Q 001415 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAP 511 (1082)
Q Consensus 433 ~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~ 511 (1082)
.+-++......-.+|++.....-...+.+.||...|+.+.|.|.... ++++++.|-.+..||+++. ..+..+..-...
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccccc
Confidence 34444555566789998755444444568899999999999998876 8999999999999999875 455555544455
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCce-eeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
-..+.|+.... .+.+.+..+.|++||.+.+... ..+..+...+..+.|..-- ...+.
T Consensus 161 asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------------------~s~~~ 218 (1081)
T KOG0309|consen 161 ASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------------------YSEIM 218 (1081)
T ss_pred CceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--------------------hhhhc
Confidence 66778876542 3555566778999999875543 3455554455554443221 12477
Q ss_pred EEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC--CCEEEEEEC---------CCcEEEEEecCCccceeeccc
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTN---------DNGIKILATSDGIRLLRTFEN 659 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~ 659 (1082)
+.+.||+|+.||............... .++..-.+.|= |.++.-.-. +.....|+..++.+.+..+.+
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vtt~-~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVTTN-FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred ccCCCCceeeecccccccccceecccc-CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 889999999999864332221111111 23455555553 322222111 222334555566677888888
Q ss_pred ccccccccccccCCC---CccccCCCCceeeeccCCceeEEEecc
Q 001415 660 LAYDASRTSENSKNG---DVRSLADVKPRITEESNDKSKVWKLTE 701 (1082)
Q Consensus 660 ~~~~~~~~~~~~~~~---~~~~s~~~~~l~~~~~d~~i~iw~~~~ 701 (1082)
|...+.. .-|... +.-.....=.|++-+.|.++++|.+..
T Consensus 298 H~D~V~e--FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 298 HDDVVLE--FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cchHHHH--HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 8876542 111110 000111222578999999999999875
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=1.2e-05 Score=90.66 Aligned_cols=319 Identities=12% Similarity=0.077 Sum_probs=169.6
Q ss_pred eEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccC-CCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEE
Q 001415 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD-GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 602 (1082)
Q Consensus 524 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 602 (1082)
..+++++.++.+..+|.++++........... . .++.. +.. ....... .+..++.++.+|.+..+|
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--~-~~~~~~~~~--------~~~~~~v--~~~~v~v~~~~g~l~ald 136 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKD--G-WFSKNKSAL--------LSGGVTV--AGGKVYIGSEKGQVYALN 136 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcc--c-ccccccccc--------cccccEE--ECCEEEEEcCCCEEEEEE
Confidence 36777778888888888887776655443210 0 00000 000 0000011 234677888899999999
Q ss_pred CCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCC
Q 001415 603 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADV 682 (1082)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 682 (1082)
..+|+.+......... ..+... .+..++++..++.+..+|..+|+.....-..... ......... ...+
T Consensus 137 ~~tG~~~W~~~~~~~~--~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------~~~~~~~sP-~v~~ 205 (394)
T PRK11138 137 AEDGEVAWQTKVAGEA--LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS------LTLRGESAP-ATAF 205 (394)
T ss_pred CCCCCCcccccCCCce--ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc------ccccCCCCC-EEEC
Confidence 9999998877654321 111111 2456777888999999999999544332211100 000000000 1123
Q ss_pred CceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEcc--CCceeeecccCCeEEEeeccccccCCCCCcc
Q 001415 683 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN--SGNAILALASNAIHLLWKWQRTERNSSGKAT 760 (1082)
Q Consensus 683 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 760 (1082)
..++.+..++.+..++..++...-..................+..+| .+..+++++.++.+..+|...++
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-------- 277 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-------- 277 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC--------
Confidence 34666777788877777654332221110000000000000111111 23456666777777777654321
Q ss_pred cccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCC-CCeeEEEEecCC
Q 001415 761 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQD 839 (1082)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~ 839 (1082)
.+|....+ . ...+.. .++.+++...+|.+..+|..+++.+....... ....+..+. +
T Consensus 278 -----~~W~~~~~-----------~---~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~ 335 (394)
T PRK11138 278 -----IVWKREYG-----------S---VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N 335 (394)
T ss_pred -----EEEeecCC-----------C---ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C
Confidence 23432211 0 111122 24444445557999999999988765543211 122333332 3
Q ss_pred CcEEEEEeCCCcEEEEecccceeeeeecccccCEEE-EEEeCCCCEEEEEeCCCcEEEEEc
Q 001415 840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 899 (1082)
Q Consensus 840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vwd~ 899 (1082)
..|+.++.||.|+..|..+|+.+...+-....+.+ ..+. +..|+.++.||.|..++.
T Consensus 336 -g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 336 -GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred -CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 36677899999999999999988776543333332 2232 447888899998887754
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=1.3e-05 Score=79.21 Aligned_cols=228 Identities=13% Similarity=0.196 Sum_probs=129.1
Q ss_pred eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCC
Q 001415 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1082)
Q Consensus 362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1082)
|.++.+.||+ +||+ -.|..|.|=..+..-.-.... ..+.+...-.=.-++||||+..||.+...
T Consensus 1 W~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~k--------------cqVpkD~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 1 WHLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGK--------------CQVPKDPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred CceeecCCCc-EEEE-EeccEEEEEeccCCchheeEE--------------EecCCCCCchheEEEECCCCcEEEEEcCC
Confidence 4578899999 4554 357777776665432111000 01233444456789999999999999999
Q ss_pred CeEEEEEccCCceee--EEEEeec-cccCeeEEEecCCC-----CceEEEEEeCCCcEEEEEccCC-----ceeEEee--
Q 001415 442 HIVQIYSYHGGDEVR--QHLEIDA-HVGGVNDIAFSHPN-----KQLCVITCGDDKTIKVWDATNG-----AKQYIFE-- 506 (1082)
Q Consensus 442 ~~v~iwd~~~~~~~~--~~~~~~~-h~~~V~~l~fs~dg-----~~~~l~s~s~d~~i~vwd~~~~-----~~~~~~~-- 506 (1082)
|+|+++|+.+..... +...+.+ -...|..+.|.+-- .. -|+.-..+|.++=+-+..| +..+++.
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 999999998754321 1001111 23467777775432 11 2444556777776665322 3333433
Q ss_pred -cCCcCeEEEeeeecCCceEEEEecC-CCc----------EEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccc
Q 001415 507 -GHEAPVYSVCPHHKENIQFIFSTAL-DGK----------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 507 -~h~~~v~~~~~~~~~~~~~l~s~~~-dg~----------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
.+...|.++.+++.. ++|+.|+. ... +..|.+-+.. |..
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------------Pyy--------- 194 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------------PYY--------- 194 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccccccccCceEEEEcCCC------------------CcE---------
Confidence 246789999988765 45555543 221 2222211110 110
Q ss_pred cceeEEEecCCCCEEEEEeCCCe------EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEec
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFS------IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~ 648 (1082)
. .++..+|+. ..+|.+-+.+..... ......|..|..||||+.|++...+|.|.+|++.
T Consensus 195 ------------k-~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 195 ------------K-QVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ------------E-EccccCccccccccccceeeccceeeeecc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 0 111121111 223443332222111 1223468999999999999999999999999987
Q ss_pred CC
Q 001415 649 DG 650 (1082)
Q Consensus 649 ~~ 650 (1082)
+-
T Consensus 260 sL 261 (282)
T PF15492_consen 260 SL 261 (282)
T ss_pred cc
Confidence 65
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=9.6e-07 Score=86.65 Aligned_cols=235 Identities=15% Similarity=0.247 Sum_probs=138.2
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEecCCccc----eeecccccccccccccccCCCCccccCCCCceeeeccCCcee
Q 001415 620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL----LRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSK 695 (1082)
Q Consensus 620 ~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 695 (1082)
.|+++.|...|.||++|...|.|.+|.......+ ...+++|... | .+
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------F-----------DY----------- 78 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------F-----------DY----------- 78 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccc-------h-----------hh-----------
Confidence 5889999999999999999999999976544211 1122222111 1 00
Q ss_pred EEEecccCCCCccccccccCcccccceeEEEEccCC--ceeeecccCCeEEEeecccccc-------------CCCCCc-
Q 001415 696 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG--NAILALASNAIHLLWKWQRTER-------------NSSGKA- 759 (1082)
Q Consensus 696 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~-------------~~~~~~- 759 (1082)
+..+. -...|..+.|..++ ..++..+.|.+|++|.+..... .+.+..
T Consensus 79 ------------LkSle-----ieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~ 141 (460)
T COG5170 79 ------------LKSLE-----IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPL 141 (460)
T ss_pred ------------hhhcc-----HHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCc
Confidence 00111 23355666665544 3467777888888888765421 111111
Q ss_pred ccccCccccCCCCcc-eee-c--ccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCe---eEEEECCCCC----
Q 001415 760 TASVAPQLWQPPSGI-MMT-N--DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMATFMPPPP---- 828 (1082)
Q Consensus 760 ~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~~---- 828 (1082)
.....+++-...... .+. . .+....|...+.++.|..|...++++.+=+|.+|+++--. .+..++.|..
T Consensus 142 ~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLt 221 (460)
T COG5170 142 TSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELT 221 (460)
T ss_pred CCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHH
Confidence 111111111111111 010 0 1122358888999999999999999999999999987322 2233444432
Q ss_pred -CeeEEEEecCCCcEEEEEeCCCcEEEEecccceee----------------eeecccccCEEEEEEeCCCCEEEEEeCC
Q 001415 829 -AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK----------------SKLKGHSKRITGLAFSHALNVLVSSGAD 891 (1082)
Q Consensus 829 -~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~----------------~~l~~h~~~V~~l~~s~d~~~l~s~s~D 891 (1082)
-|++..|+|....++...+..|.|++-|++...+- .-+.+-.+.|..+.|+++|+++++-+.
T Consensus 222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy- 300 (460)
T COG5170 222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY- 300 (460)
T ss_pred HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-
Confidence 38899999977788888889999999998743210 001122345666667776666665443
Q ss_pred CcEEEEEcCC
Q 001415 892 SQLCVWSSDG 901 (1082)
Q Consensus 892 g~i~vwd~~~ 901 (1082)
-+|++||+.-
T Consensus 301 ltvkiwDvnm 310 (460)
T COG5170 301 LTVKIWDVNM 310 (460)
T ss_pred ceEEEEeccc
Confidence 3466776654
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=2.2e-07 Score=90.97 Aligned_cols=263 Identities=14% Similarity=0.185 Sum_probs=159.4
Q ss_pred CCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCc--eeeEEEEeecccc------------CeeEEEecCCCCceEEEE
Q 001415 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT 484 (1082)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~--~~~~~~~~~~h~~------------~V~~l~fs~dg~~~~l~s 484 (1082)
....|+++.|...|.|||+|...|.|.+|.-.... ..+-..++++|.. .|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999765432 1222224555543 478888887766545666
Q ss_pred EeCCCcEEEEEccCCc-------------------ee-----------------------EEe-ecCCcCeEEEeeeecC
Q 001415 485 CGDDKTIKVWDATNGA-------------------KQ-----------------------YIF-EGHEAPVYSVCPHHKE 521 (1082)
Q Consensus 485 ~s~d~~i~vwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~~~~~~~~ 521 (1082)
.+.|++|++|.+.... ++ +.. ..|.-.+.++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6789999999875431 00 000 2455566777765433
Q ss_pred CceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCC-CEEEEEeCCCeEEE
Q 001415 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF 600 (1082)
Q Consensus 522 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i 600 (1082)
..+++ +.|=.|.+|+++-......+ +.+-|.... .-...+++..|+|.. +.+.-.+..|.|++
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nme----eLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNME----ELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEE---------EeccCccHH----HHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 44554 45778999988754433211 111111100 000133444455543 34556778899999
Q ss_pred EECCCcce------EEEE--ecC------CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccc
Q 001415 601 WDMDSVQL------LTSI--DAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666 (1082)
Q Consensus 601 wd~~~~~~------~~~~--~~~------~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1082)
-|++...+ +... .+. +-...|..+.|+++|+++++-+. -++++||.+..+.+++++.-|......
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHH
Confidence 99874321 1111 110 11235788999999999987654 689999999887777777544332211
Q ss_pred c------ccccCCCCccccCCCCceeeeccCCceeEEE
Q 001415 667 T------SENSKNGDVRSLADVKPRITEESNDKSKVWK 698 (1082)
Q Consensus 667 ~------~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~ 698 (1082)
. ..-|..-.+.++.|.+.+++|+..+..-++-
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 1 1112223344577888888888777666654
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.67 E-value=6.8e-06 Score=85.89 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=136.6
Q ss_pred CCeEEEEecCCCeeEEEECCCC--CCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCC
Q 001415 806 GGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 883 (1082)
Q Consensus 806 dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 883 (1082)
+|.|..||..+++.+....... ....+..+ + ++..+++++.++.|+.||..+|+.+..... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 4789999999999988875422 12222233 2 344666678999999999999998866653 22211111 22455
Q ss_pred EEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccCCC
Q 001415 884 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 962 (1082)
Q Consensus 884 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h 962 (1082)
.++.++.|+.|..+|..+++..-.......... ..........++..++++ .++.|..+|.++|+.+-.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 667777888999999888775332111111100 111222333336666664 589999999999999877764221
Q ss_pred C--c------ceeEEEEcCCCceEEEeecCCc-EEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEE
Q 001415 963 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1033 (1082)
Q Consensus 963 ~--~------~i~~l~~s~dg~~l~t~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s 1033 (1082)
. . .+..-....++ .++.++.++. +.+ |+.+++.+-... ..+ .. . .... ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 1 11222233345 6666777775 555 999999663222 111 11 1 1233 3667777
Q ss_pred EecCCcEEEEccCCCCCccc
Q 001415 1034 GLSDGGVHVFEPLESEGKWG 1053 (1082)
Q Consensus 1034 ~~~dg~v~vW~~~~~~~~~~ 1053 (1082)
++.++.|..||+.+|+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998775
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=3e-06 Score=81.74 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=118.7
Q ss_pred EEEEEcCCCcEEEEEccccceeee----------------------------eceeeeccCCCCcccccccccCCCC--c
Q 001415 373 LLLVGTNVGDIGLWEVGSRERLVL----------------------------RNFKVWDLGACSMPLQAALVKDPGV--S 422 (1082)
Q Consensus 373 llasgs~dg~i~iwd~~~~~~~~~----------------------------~~~~~~d~~~~~~~~~~~~~~~h~~--~ 422 (1082)
+||.|+..|...+|...+.+.... +..++.+++......+ -|.. .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~~~ 160 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA-----VHNQNLT 160 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-----eeccccc
Confidence 477888888888888776543321 1123333332222222 2322 3
Q ss_pred eeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee
Q 001415 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1082)
Q Consensus 423 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~ 502 (1082)
+.++++|+|++++++.+....|..|.+...............++.=.+..|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999986544332223445556667899998888 7999999999999999874433
Q ss_pred E-----EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceee
Q 001415 503 Y-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 548 (1082)
Q Consensus 503 ~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 548 (1082)
+ +-..|.+.+..+.|++.+.-.+|+..-.-+.+.+-|+++......
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 2 223588999999998766556777777778899999988665443
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=3.1e-05 Score=81.03 Aligned_cols=217 Identities=15% Similarity=0.098 Sum_probs=138.0
Q ss_pred EEEeec-CCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe-cCCCcEEEEEeCCCcEEEEecccceeeeeec
Q 001415 791 CFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 867 (1082)
Q Consensus 791 ~l~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 867 (1082)
+++|.+ ++.++++-. .+.|..|+..++....... .. ...+++. + ++.++++ .. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~-~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRP-DGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECT-TSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEcc-CCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 577887 565555554 5889999998876644222 22 7778888 5 6666554 43 456666998885543333
Q ss_pred c-----cccCEEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415 868 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 868 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 934 (1082)
. .....+.+++.++|++.++.... |.|..++.. ++. ....... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988776544 345555555 221 1122211 23478999999998
Q ss_pred EEEE--ecCeEEEEEccCcce----eeee-ccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeec
Q 001415 935 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1007 (1082)
Q Consensus 935 l~~~--~d~~i~iwd~~~~~~----~~~~-~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1007 (1082)
|.++ ..+.|..|++..... ...+ ......+..-.+++..+|.+.++....+.|.+++.. |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 7763 567888888863322 1122 111212358899999999988888889999999988 98888877 3
Q ss_pred CCCCCCCCceeeEEEEeCCCCCeEEEE
Q 001415 1008 PAGVSSSNVHPLVIAAHPQEPNEFALG 1034 (1082)
Q Consensus 1008 ~~gh~~~~v~~~~~~~~~~d~~~l~s~ 1034 (1082)
|. -.+++++|...|.+.|.+.
T Consensus 223 p~------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 PV------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SS------SSEEEEEEESTTSSEEEEE
T ss_pred CC------CCEEEEEEECCCCCEEEEE
Confidence 31 2466899964355554443
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=0.00015 Score=75.78 Aligned_cols=229 Identities=19% Similarity=0.199 Sum_probs=141.4
Q ss_pred eEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe-cCCCeEEEEeC
Q 001415 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 440 (1082)
Q Consensus 362 ~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 440 (1082)
.+++|.+....|+++.-..+.|..|+..+++.... ... ....+++. ++|+++ .+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~-v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLY-VADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEE-EEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEE-EEEc
Confidence 36789984444788888899999999988765431 111 26777887 665554 4545
Q ss_pred CCeEEEEEccCCceeeEEEEee--c-cccCeeEEEecCCCCceEEEEEeCC--------CcEEEEEccCCceeEEeecCC
Q 001415 441 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 509 (1082)
Q Consensus 441 d~~v~iwd~~~~~~~~~~~~~~--~-h~~~V~~l~fs~dg~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~h~ 509 (1082)
++ +.++|..+++.. .+.... . .....+.+++.++|. +.++.... |.|..++.. ++...... .-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 44 566699888643 333332 2 345788999999999 56665433 446666655 44333333 34
Q ss_pred cCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEE
Q 001415 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1082)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l 589 (1082)
...+.++|+++.. .++++-+..+.|..++++........ ..+.....+. .+....++++.+|+..
T Consensus 134 ~~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~-------~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 134 GFPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSN-------RRVFIDFPGG-------PGYPDGLAVDSDGNLW 198 (246)
T ss_dssp SSEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEE-------EEEEEE-SSS-------SCEEEEEEEBTTS-EE
T ss_pred ccccceEECCcch-heeecccccceeEEEeccccccceee-------eeeEEEcCCC-------CcCCCcceEcCCCCEE
Confidence 5668889876543 34456677888888888643331100 0000000000 0134457777777777
Q ss_pred EEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEE-cCCCCEEEEEE
Q 001415 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVST 637 (1082)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-s~dg~~l~~~~ 637 (1082)
++....+.|.+++.+ |+.+..+..... .+++++| .++.+.|++.+
T Consensus 199 va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 199 VADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence 877788999999987 888888876633 6889999 46767776654
No 304
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.60 E-value=0.0033 Score=72.75 Aligned_cols=465 Identities=11% Similarity=0.095 Sum_probs=246.7
Q ss_pred CeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCcCeEEEeeeecCCce----EEEEecCCCcEEEEecC
Q 001415 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLYD 541 (1082)
Q Consensus 467 ~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~~ 541 (1082)
.++..+.+.+.. .++.++.++.+...++..+.....- ......|.|+.++|.++++ +++.|..+..+.
T Consensus 489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~----- 561 (1096)
T KOG1897|consen 489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM----- 561 (1096)
T ss_pred ceEEEEEeecce--EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE-----
Confidence 444444444444 3555566677777777766522111 1234678888888765443 566665444433
Q ss_pred CCCceeeecCCCCceEEEEEccCCCeeeecc-----cccceeEEEecCCCCEEEEEeCCCeEEEE--ECCCcceEEEEec
Q 001415 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFW--DMDSVQLLTSIDA 614 (1082)
Q Consensus 542 ~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~ 614 (1082)
-+.+.||...+.... -...+-...+-.+..+|+++..||.+.-+ |..++..-..-+.
T Consensus 562 ----------------~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~ 625 (1096)
T KOG1897|consen 562 ----------------ILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV 625 (1096)
T ss_pred ----------------EEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc
Confidence 233444443221111 01133334455556789999999998766 4455554433333
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCce
Q 001415 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKS 694 (1082)
Q Consensus 615 ~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 694 (1082)
+-+..++.--.|+..++.-+.+..|.-..+|..+.. -....+.-....- ...| .++....-+.....+.+
T Consensus 626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~~---~c~f------~s~a~~d~l~~~~~~~l 695 (1096)
T KOG1897|consen 626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVNH---MCPF------NSDAYPDSLASANGGAL 695 (1096)
T ss_pred ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhhh---hccc------ccccCCceEEEecCCce
Confidence 334445655667665554444555555555543322 2222111110000 1111 12333333344444667
Q ss_pred eEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcc
Q 001415 695 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 774 (1082)
Q Consensus 695 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1082)
++..++...+..... .| -......+++.+....+.+.+.......= . .+.......++++|.++-.
T Consensus 696 ~i~tid~iqkl~irt---vp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~-------~-~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 696 TIGTIDEIQKLHIRT---VP---LGESPRRICYQESSLTFGVLSNRIESSAE-------Y-YGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred EEEEecchhhcceee---ec---CCCChhheEecccceEEEEEecccccchh-------h-cCCcceEEEEEEecCCcee
Confidence 777666543332221 12 23345566777644433333332111100 0 0111122235666776655
Q ss_pred eeecc-cCCCCCCCCccEEEeecC-CCeEEEee-----------CCeEEEEecCCCeeEEEECC--CCCCeeEEEEecCC
Q 001415 775 MMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQD 839 (1082)
Q Consensus 775 ~~~~~-~~~~~~~~~i~~l~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~ 839 (1082)
.+... +...+....+.++.|..| ++++++|. .|.|.+|.....+.++.... -.+.+.++..- +
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--n 839 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--N 839 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--C
Confidence 44421 111111223444457777 77888774 26788998877444433322 23445555443 5
Q ss_pred CcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCC
Q 001415 840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 919 (1082)
Q Consensus 840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 919 (1082)
++++|. -+..|++|++.+.+.++.-..|..++..+...-.|..++.|+--+.+.+-..+..+-. +........+
T Consensus 840 gkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~---f~evArD~~p- 913 (1096)
T KOG1897|consen 840 GKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGN---FEEVARDYNP- 913 (1096)
T ss_pred CeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCc---eEEeehhhCc-
Confidence 667653 4678999999998777777788899999999999999999998888777665553311 2222222221
Q ss_pred CCCCcEEEEcCCCcEEEEEecCeEEEEEccCc-------------------ceeeeeccCCCCcceeE--EEEcCCCceE
Q 001415 920 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-------------------ECVKQWVPRESSAPITH--ATFSCDSQLV 978 (1082)
Q Consensus 920 ~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~-------------------~~~~~~~~~~h~~~i~~--l~~s~dg~~l 978 (1082)
...+.+.+-.+..++.+-..+.+.+...++. +.+..+ .|..-|.. -..+|-+..+
T Consensus 914 -~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f---~hg~lv~~~~~s~~~~~~~v 989 (1096)
T KOG1897|consen 914 -NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF---RHGSLVMQLGDSMIPLEPKV 989 (1096)
T ss_pred -cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee---eecceEeeccccccCCCCcE
Confidence 4578888888888888866676666543321 111111 23444444 1334555567
Q ss_pred EEeecCCcEEEE
Q 001415 979 YACFLDATVCVF 990 (1082)
Q Consensus 979 ~t~s~dg~v~vw 990 (1082)
..|..+|.|-+-
T Consensus 990 lfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 990 LFGTVNGSIGII 1001 (1096)
T ss_pred EEEEccceEEEE
Confidence 888889988653
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=8.6e-07 Score=85.09 Aligned_cols=210 Identities=11% Similarity=0.162 Sum_probs=126.4
Q ss_pred ceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeC
Q 001415 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1082)
Q Consensus 361 v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1082)
|+.+.|+.+- .|+++..++.+......++.+.. .|+-..... +...+..|+++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6667777665 58888888888888776665543 222221111 12234455555555555667888999999
Q ss_pred CCeEEEEEccCCceeeEEEEee-ccccCeeEEEecCCCCceEEEEEe-----CCCcEEEEEccCCceeEEeecCCcCeEE
Q 001415 441 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1082)
Q Consensus 441 d~~v~iwd~~~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~~~l~s~s-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 514 (1082)
||.+.+.+.+.-..+.. ... .|.+. .+......+. ++.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 99999999876222111 111 12221 2223333444 333332 2234556665543322221222334889
Q ss_pred EeeeecCCceEEEEecCCCcEEEEecCCCCcee-eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEe
Q 001415 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1082)
Q Consensus 515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 593 (1082)
++-+|... +.+++|+.||.+-+||++...... .+..|..++..+-|.|.. +..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~--------------------p~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN--------------------PEHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC--------------------chheeEec
Confidence 99888765 688899999999999998753322 344555555555555543 34799999
Q ss_pred CCCeEEEEECCC
Q 001415 594 DDFSIKFWDMDS 605 (1082)
Q Consensus 594 ~dg~i~iwd~~~ 605 (1082)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999765
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=7.9e-06 Score=90.99 Aligned_cols=325 Identities=11% Similarity=0.120 Sum_probs=167.3
Q ss_pred eeEEEecCCCCceEEEEEe----CCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCC
Q 001415 468 VNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 543 (1082)
Q Consensus 468 V~~l~fs~dg~~~~l~s~s----~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 543 (1082)
-+-..|.|... +++.++ ..|+|.|+- ++|++.+... ..-.++++||+|.. -.|+.|-.-|.+.+|...+.
T Consensus 18 sti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 18 STISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH--HHHhhccccceeEEEecCCc
Confidence 34457888877 555544 457788886 7787655443 22345679999865 57788888899999987765
Q ss_pred CceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEec--CC--CCC
Q 001415 544 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA--DG--GLP 619 (1082)
Q Consensus 544 ~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~--~~~ 619 (1082)
+.-.....|..++..+.||++|. .++++..-|.+.+|....-..++.... |. ..-
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~---------------------~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGT---------------------VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCC---------------------eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 55545555555666666655554 788888889999998763222222111 11 111
Q ss_pred CcCeEEEcCCCCE------EEEEECCCcEE-EEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCC
Q 001415 620 ASPRIRFNKDGCL------LAVSTNDNGIK-ILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESND 692 (1082)
Q Consensus 620 ~i~~~~~s~dg~~------l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 692 (1082)
...+...++++.- .++.+++..+- .++.... . +-....-...++|..++.++.+|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~------~------------a~rs~~ksgv~~g~~F~~~~~~G 212 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKES------L------------AERSDEKSGVPKGTEFLFAGKSG 212 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccc------h------------hhccccccCCCCCcEEEEEcCCc
Confidence 2234455565321 22333333221 1111100 0 00011111268888899999999
Q ss_pred ceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeecccccc-------CCCCCcccc-cC
Q 001415 693 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER-------NSSGKATAS-VA 764 (1082)
Q Consensus 693 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~~-~~ 764 (1082)
+|+--|-... ++.+. ..+....+.|.+-...+++...+-.+.++-...... ...|+.-.. ..
T Consensus 213 tVyyvdq~g~-----~~~V~-----k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGg 282 (1416)
T KOG3617|consen 213 TVYYVDQNGR-----QRTVH-----KLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGG 282 (1416)
T ss_pred eEEEEcCCCc-----EEEEE-----EccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCc
Confidence 8887664321 11110 000011122333333333333333333332221100 000000000 00
Q ss_pred ccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCC-------eeEEEECC---CCCCeeEE
Q 001415 765 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTF-------KTMATFMP---PPPAATFL 833 (1082)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~-------~~~~~~~~---~~~~v~~l 833 (1082)
+.. .-.+|.+....--+......+.|++++.-+..+..|.+ |.+.+|--... ....++.+ ..+.|+.+
T Consensus 283 iA~-sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i 361 (1416)
T KOG3617|consen 283 IAC-SESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLI 361 (1416)
T ss_pred ccc-ccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEE
Confidence 000 11112222222222335678999999999999998875 99999964321 22334433 34579999
Q ss_pred EEecCCCcEEEEEeCC
Q 001415 834 AFHPQDNNIIAIGMDD 849 (1082)
Q Consensus 834 ~~sp~~~~~lasg~~d 849 (1082)
.|.| -...+++-+..
T Consensus 362 ~Wg~-~k~~~avn~~~ 376 (1416)
T KOG3617|consen 362 RWGP-IKSTAAVNTEE 376 (1416)
T ss_pred Eecc-ccchhhhhhhh
Confidence 9999 55555554433
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.57 E-value=8.1e-05 Score=84.01 Aligned_cols=312 Identities=10% Similarity=0.007 Sum_probs=168.5
Q ss_pred EEEEEeCCCcEEEEEccCCceeEEeecCCc--CeE-----EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001415 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1082)
Q Consensus 481 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 553 (1082)
.++.++.++.+.-+|.++|+.+........ ... .+.-.+.-.+..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466777788899999999988876542210 000 0000011122467788889999999999888877665433
Q ss_pred CceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCC---CcCeEEEcCCC
Q 001415 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDG 630 (1082)
Q Consensus 554 ~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~dg 630 (1082)
....+... .+..++.+..++.+..+|..+|+.+.......... ...+... .+
T Consensus 151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 21100000 02256777888999999999999988776432100 0011111 23
Q ss_pred CEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCcccc
Q 001415 631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 710 (1082)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 710 (1082)
..++.++.+|.+..+|..++......-......... .-.+........-.+..++.++.++.+..+|..+++..-...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~-~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~- 283 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE-IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE- 283 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccc-hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-
Confidence 457778888999999998884432211000000000 000000000001134556667778888888877643221110
Q ss_pred ccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCcc
Q 001415 711 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 790 (1082)
Q Consensus 711 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 790 (1082)
+ .....+. ..+..++.++.++.+..+|..... .+|..... ......
T Consensus 284 --~------~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~~~~-----------~~~~~~ 329 (394)
T PRK11138 284 --Y------GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGV-------------ELWSQSDL-----------LHRLLT 329 (394)
T ss_pred --C------CCccCcE--EECCEEEEEcCCCeEEEEECCCCc-------------EEEccccc-----------CCCccc
Confidence 0 0111111 235567777788888877654321 23332110 001111
Q ss_pred EEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeE-EEEecCCCcEEEEEeCCCcEEEEec
Q 001415 791 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYNV 857 (1082)
Q Consensus 791 ~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~lasg~~dg~v~iwd~ 857 (1082)
+..+ .++.+++...+|.+...|..+++.+.........+.+ ..+. ++ .|++++.||.|+.++.
T Consensus 330 sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 APVL-YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CC-EEEEEeCCceEEEEeC
Confidence 1122 2455544445799999999999988877643333332 2332 34 5677889999988764
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3.9e-07 Score=90.93 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=125.0
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1082)
++||-+-.-+-++.+.+-.|-+-|++||-... +. ..+.|.++.|...+..+..|+.+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCc
Confidence 36664332233555567788899998875432 22 5678999999999999999999999
Q ss_pred EEEEEccCCce--eeEEEEeeccccCeeEEEecC-CCCceEEEEEeCCCcEEEEEccCCce---eEEeecCCcCeEEEee
Q 001415 444 VQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCP 517 (1082)
Q Consensus 444 v~iwd~~~~~~--~~~~~~~~~h~~~V~~l~fs~-dg~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~ 517 (1082)
|..+|+..+.. ..+. ..-.|...|+++..-. +++ +|++.+.+|+|++||.+--++ +++..||...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986511 1111 1235889999998877 555 789999999999999987666 8899999877666666
Q ss_pred eecCCceEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001415 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1082)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 553 (1082)
+-++....+++++.|...|+|.++.+..+.++....
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 666666789999999999999999877766555443
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.00016 Score=69.98 Aligned_cols=299 Identities=12% Similarity=0.090 Sum_probs=162.4
Q ss_pred EEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeE
Q 001415 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444 (1082)
Q Consensus 365 ~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v 444 (1082)
..-+|.+.+++.|+..+.+.--|..+|+..-+. --...|.+-+.- -|++++.|+..|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 445667778999999999999999999876531 112233333322 57789999999999
Q ss_pred EEEEccCCceeeEEEEeeccccCee-EEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCc
Q 001415 445 QIYSYHGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523 (1082)
Q Consensus 445 ~iwd~~~~~~~~~~~~~~~h~~~V~-~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 523 (1082)
.+.+.++|........+. .|. .....+++. ++..|+.|++.+.-|..+..++...+...+...+-++.+. ++
T Consensus 76 Yfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG 148 (354)
T ss_pred EEEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc
Confidence 999999997665433322 222 233456777 8999999999999999999999887644333333333332 22
Q ss_pred eEEEEecCCCcE-----------EEEecCCCCceeeecC---CCCce-----EEEEEccCCCeeeecccccceeE-EEec
Q 001415 524 QFIFSTALDGKI-----------KAWLYDNLGSRVDYEA---PGRWC-----TTMAYSADGTRTYQGFRKRSLGV-VQFD 583 (1082)
Q Consensus 524 ~~l~s~~~dg~i-----------~iwd~~~~~~~~~~~~---~~~~v-----~~~~~s~d~~~~~~~~~~~~i~~-~~~~ 583 (1082)
.|+.+...|.+ .+|-.....+.+.... ..-.+ .-++|++.|+.+..-.+.+.+.. -+.+
T Consensus 149 -sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s 227 (354)
T KOG4649|consen 149 -SLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCES 227 (354)
T ss_pred -eEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccC
Confidence 23333333332 2343333222221100 00011 12467777876666555555432 1112
Q ss_pred -CCCCEEEEEeCCCe--------EEEEECCCcceEEEEecCCCCCCcCeEEEc-C---CCCEEEEEECCCcEEEEEecCC
Q 001415 584 -TTKNRFLAAGDDFS--------IKFWDMDSVQLLTSIDADGGLPASPRIRFN-K---DGCLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 584 -~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~---dg~~l~~~~~dg~i~iwd~~~~ 650 (1082)
|..+.+..+.++.. -.+|..++|.....+-... ...+++ | ..++|..++.||.+.|.-....
T Consensus 228 ~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s 302 (354)
T KOG4649|consen 228 RPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS 302 (354)
T ss_pred CCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhcCCCcEEEEEeccc
Confidence 33344444443332 2356655554333332111 012221 1 1456777888999888743322
Q ss_pred ccceeeccccccccccc-ccccCCCCccccCC--CCceeeeccCCceeEEEecc
Q 001415 651 IRLLRTFENLAYDASRT-SENSKNGDVRSLAD--VKPRITEESNDKSKVWKLTE 701 (1082)
Q Consensus 651 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~--~~~l~~~~~d~~i~iw~~~~ 701 (1082)
+.....+....... .+.. ..++..+|- +..++.|++|.-++.||+.+
T Consensus 303 ---l~~~~s~~g~lq~~~~~el-~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 303 ---LAEISSNGGELQNLEAIEL-SNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred ---ccccccCCCccceEEEeec-CcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 11111111111100 1111 112222331 35588999999999999874
No 310
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.54 E-value=3.3e-07 Score=86.52 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=98.8
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHH
Q 001415 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1082)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1082)
...++++|++|+++.|++.++.....-... ...+.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 578999999999999999999872211111 1249999999999999999999999999999997665445567777888
Q ss_pred Hhccccccc--hhhhccCCCchHHHHHHHHHHHhhcccCCCccccccCCCCc-chHHHHHHHHHHHHH
Q 001415 118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 182 (1082)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~~~~~~q 182 (1082)
+|....... ...+...-+. .+|+++++.+.+.+-...- +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 887766554 3344333333 7789999999887655332 33 567888888876544
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=7.7e-07 Score=97.34 Aligned_cols=219 Identities=13% Similarity=0.228 Sum_probs=145.8
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-C
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D 431 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 431 (1082)
.+-+|+..|+.+-|.|...-++|+.+.|..|..||+....... -. ...-...-+.++|+. |
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys--------------~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YS--------------TSSWRSAASQVKWNYKD 170 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----ee--------------eecccccCceeeecccC
Confidence 4556999999999999998899999999999999997754332 11 112223556788988 5
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce--eEEeecCC
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHE 509 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~h~ 509 (1082)
+..|| .+....|++||...|.... ..+++|...|..++|..--.. .+.+++.|++|+.||...... .++.. ..
T Consensus 171 p~vla-sshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~ 245 (1081)
T KOG0309|consen 171 PNVLA-SSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVT-TN 245 (1081)
T ss_pred cchhh-hccCCceEEEeccCCCcce--EEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceecc-cc
Confidence 55555 4466789999998776433 368889999999999764333 588999999999999875432 22222 44
Q ss_pred cCeEEEeeeecCCceEEEEecCCCcEEEEecCC----------CCceeeecCCCCceEEEEEccCCCeeeecccccceeE
Q 001415 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----------LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1082)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~ 579 (1082)
.+|+--++.|-++|.++.-.-.+..+.+.+.++ ..++..+.+|.+.|....|...+.. .
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~-----------~ 314 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC-----------D 314 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc-----------c
Confidence 566666666767665555444444555544433 2344566666666655554433220 0
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCC
Q 001415 580 VQFDTTKNRFLAAGDDFSIKFWDMDS 605 (1082)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 605 (1082)
-.++...-+|++-+.|.++++|-+..
T Consensus 315 ~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 315 GDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCCccceeEEEeecCCceEeeeccH
Confidence 11122223789999999999998754
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.53 E-value=7.8e-06 Score=91.44 Aligned_cols=136 Identities=10% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCcEEEEEeCCCcEEEEeccc-----ceeeeeecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCccccc------
Q 001415 839 DNNIIAIGMDDSSIQIYNVRV-----DEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK------ 906 (1082)
Q Consensus 839 ~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~------ 906 (1082)
+|++... .++.|.+.|..+ .+.+..+. -......+++||||+++++++ .+.+|.|.|+...+..-
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4444444 256788999887 34444444 334568899999999987766 48899999998844200
Q ss_pred -ce-eeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccC----------cceeeeeccC---CCCcceeEEE
Q 001415 907 -NR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK----------LECVKQWVPR---ESSAPITHAT 970 (1082)
Q Consensus 907 -~~-~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~----------~~~~~~~~~~---~h~~~i~~l~ 970 (1082)
.. .-+..-| ......+|.++|....+ --|.+|..|++.+ ...+..+..+ +|......=.
T Consensus 364 ~~~vvaevevG-----lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t 438 (635)
T PRK02888 364 RDAVVAEPELG-----LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGET 438 (635)
T ss_pred cceEEEeeccC-----CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCc
Confidence 00 1111112 34578999999986666 4789999999876 2233333321 3333222334
Q ss_pred EcCCCceEEEee
Q 001415 971 FSCDSQLVYACF 982 (1082)
Q Consensus 971 ~s~dg~~l~t~s 982 (1082)
-.|||+||++.+
T Consensus 439 ~~~dgk~l~~~n 450 (635)
T PRK02888 439 KEADGKWLVSLN 450 (635)
T ss_pred CCCCCCEEEEcc
Confidence 478999998875
No 313
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.52 E-value=0.0053 Score=71.21 Aligned_cols=591 Identities=11% Similarity=0.089 Sum_probs=288.8
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecC-
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1082)
..++..+-..|+.+-++| +|++||.-|.=.+-.+.+....... ....+. -..-++|..++.-.+
T Consensus 301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ilet---~~NLgPI~Dm~Vvd~d 365 (1096)
T KOG1897|consen 301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILET---FVNLGPIVDMCVVDLD 365 (1096)
T ss_pred EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhhh---cccccceeeEEEEecc
Confidence 455667777888888898 6889998776655555443222100 000000 112347888777552
Q ss_pred ---CCeEEEEe---CCCeEEEEEccCCceeeEEEEeeccccCeeEEE--ecCCCCceEEEEEeCCCcEEEEEccCCceeE
Q 001415 432 ---GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1082)
Q Consensus 432 ---g~~las~~---~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~--fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~ 503 (1082)
+..+++|+ .||+++|..-.-+-.......+.| -..++.+. +.+.-.. +++.+-. +.-++..+...-...
T Consensus 366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~ 442 (1096)
T KOG1897|consen 366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEET 442 (1096)
T ss_pred ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEe
Confidence 24555554 588999986544332222334555 45677777 5443333 3333322 223344432221111
Q ss_pred EeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEec
Q 001415 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1082)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~ 583 (1082)
...+.......+..+.-. ++.|+=.. ...||+++-. .....+..+.+. +.....
T Consensus 443 ~~~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~----------------------ti~~~~ 496 (1096)
T KOG1897|consen 443 EDPGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKI----------------------TIGVVS 496 (1096)
T ss_pred ccccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhhcccCCCce----------------------EEEEEe
Confidence 111111222222211111 11111111 1234444332 111111111111 111112
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC--C----CEEEEEECCCcEEEEEecCCccceee-
Q 001415 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRT- 656 (1082)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d--g----~~l~~~~~dg~i~iwd~~~~~~~~~~- 656 (1082)
.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-..........
T Consensus 497 ~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~ 575 (1096)
T KOG1897|consen 497 ANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE 575 (1096)
T ss_pred ecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence 222256777777777777776665 333322333346889999973 2 37888887766655433222122111
Q ss_pred -cccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCc-cccccccCcccccceeEEEEccCCcee
Q 001415 657 -FENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ-CRSLRLPENLRATKISRLIFTNSGNAI 734 (1082)
Q Consensus 657 -~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l 734 (1082)
+.+...+. ++-+ ...-.|..+|.++..||.+.-|.+........ .+.. .....++.--.|+..++.-
T Consensus 576 ~l~~~~iPR---SIl~----~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~----~lGt~P~~Lr~f~sk~~t~ 644 (1096)
T KOG1897|consen 576 QLSGEIIPR---SILL----TTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV----TLGTQPISLRTFSSKSRTA 644 (1096)
T ss_pred ccCCCccch---heee----EEeeccceEEEEEcCCceEEEEEEEcccceEcccccc----ccCCCCcEEEEEeeCCceE
Confidence 11111111 1111 11244578899999999887666553221111 1100 1134455556676666555
Q ss_pred eecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEec
Q 001415 735 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM 814 (1082)
Q Consensus 735 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~ 814 (1082)
+.+.+|.-..+|.-. +++.-..+.. ..-..+..+.-..-...++.+..+.+++.-+
T Consensus 645 vfa~sdrP~viY~~n-----------------------~kLv~spls~-kev~~~c~f~s~a~~d~l~~~~~~~l~i~ti 700 (1096)
T KOG1897|consen 645 VFALSDRPTVIYSSN-----------------------GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASANGGALTIGTI 700 (1096)
T ss_pred EEEeCCCCEEEEecC-----------------------CcEEEeccch-HHhhhhcccccccCCceEEEecCCceEEEEe
Confidence 555555444444221 1111110100 0001111111112234677777777777766
Q ss_pred CCCee--EEEECCCCCCeeEEEEecCCCcEEEEEeCC--------------CcEEEEecccceeeeeeccc----ccCEE
Q 001415 815 MTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYNVRVDEVKSKLKGH----SKRIT 874 (1082)
Q Consensus 815 ~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------------g~v~iwd~~~~~~~~~l~~h----~~~V~ 874 (1082)
+.-+. +++.. -......+++.+ ...++++.+.- ..++++|-++.+.+...+-. .-.|.
T Consensus 701 d~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~ 778 (1096)
T KOG1897|consen 701 DEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSII 778 (1096)
T ss_pred cchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeee
Confidence 64322 23332 233456667765 44444443321 13566666655443322110 12355
Q ss_pred EEEEeCC-CCEEEEEeC----------CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC-CCcEEEEEecCe
Q 001415 875 GLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVVHETQ 942 (1082)
Q Consensus 875 ~l~~s~d-~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~d~~ 942 (1082)
+..|..| +.+++.|.. .|.|.|+.+......+...-.... +.+ .+.-- +|+ ++++-...
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav--~aL~~fngk-llA~In~~ 849 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAV--YALVEFNGK-LLAGINQS 849 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cce--eehhhhCCe-EEEecCcE
Confidence 5568887 777777753 367778877762221111101111 111 22222 344 45556778
Q ss_pred EEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEE--ecCCceeeeeeCCCeecCCCCCCCCceeeE
Q 001415 943 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF--SAANLKLRCRINPSAYLPAGVSSSNVHPLV 1020 (1082)
Q Consensus 943 i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1020 (1082)
|++|++.+.+.++.-. .|..++..+...-.|..+++|.-=+.+.+- +-..|...-.- ..+.| -+.++
T Consensus 850 vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA--rD~~p-------~Wmta 918 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA--RDYNP-------NWMTA 918 (1096)
T ss_pred EEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee--hhhCc-------cceee
Confidence 9999998886655433 567889999999999999999877776654 44444444322 22322 23445
Q ss_pred EEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415 1021 IAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1021 ~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
+.+.. .+.++-+..+|.+++-...+
T Consensus 919 veil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 919 VEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EEEec--CceEEeecccccEEEEEecC
Confidence 66654 45677778888888876654
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.51 E-value=2.4e-06 Score=82.07 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=99.6
Q ss_pred cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee---
Q 001415 729 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--- 805 (1082)
Q Consensus 729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--- 805 (1082)
--++.++++..||.+.+++.+. .+... ...... | ..-.+.++...+.++.++.
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~-~~~~~---------------~~i~~~-------~-~~~as~~~~~~~~~i~s~~~g~ 154 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDK-DLALM---------------SRIPSI-------H-SGSASRKICRHGNSILSGGCGN 154 (319)
T ss_pred ccCCceEecCCCceEEEEechH-HHhhh---------------hhcccc-------c-ccccccceeecccEEecCCcce
Confidence 3456689999999999887653 11110 000000 1 1111222334455555543
Q ss_pred ---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccce-eeeeecccccCEEEEEEeCC
Q 001415 806 ---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHA 881 (1082)
Q Consensus 806 ---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d 881 (1082)
-+..+.|+++..+....-......|++++-+|...+++++|+.||.+-+||.+... ....++.|+.+|+.+-|+|.
T Consensus 155 ~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred EeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 35577777764433322222233499999999777899999999999999998764 34567899999999999985
Q ss_pred -CCEEEEEeCCCcEEEEEcCC
Q 001415 882 -LNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 882 -~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
+..|++++.||.+.-||-.+
T Consensus 235 ~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CchheeEecCCCcEEEEcCCC
Confidence 57799999999999999876
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.2e-06 Score=86.69 Aligned_cols=299 Identities=14% Similarity=0.150 Sum_probs=189.2
Q ss_pred cccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecC
Q 001415 718 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 797 (1082)
Q Consensus 718 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 797 (1082)
|...|+.+..+ -.+++++++.||.++.|.-.. .+|........ .|...+.+++.+.|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFr--aHL~~I~sl~~S~d 64 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFR--AHLGVILSLAVSYD 64 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhhhH--HHHHHHHhhhcccc
Confidence 66666665443 456789999999999884221 01211111111 27788899999999
Q ss_pred CCeEEEee--CCeEEEEecCCCeeEEEECC--CCCCeeEEEEecCCC-cEEE-EEeCCCcEEEEecccce--eeeeeccc
Q 001415 798 DSYVMSAS--GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDN-NIIA-IGMDDSSIQIYNVRVDE--VKSKLKGH 869 (1082)
Q Consensus 798 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~-~~la-sg~~dg~v~iwd~~~~~--~~~~l~~h 869 (1082)
|.++.+.+ |..++++|+++...+.-++. .++. .+...++.+. ..|| +.-.+|.+.++|-...- ....-.-|
T Consensus 65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred ceeEeeccCcccceeEEEeeccchhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 99999976 57799999987665533221 1221 2222333111 1333 34467899999976543 33444569
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-cccccceee------eccCCCCCCCCCCcEEEEcCCCcEEEE-EecC
Q 001415 870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFL------QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 941 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~------~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 941 (1082)
..+|..+.+++-+..++|....|.|.-|..+. .+..+.... ....+.........++.|+|+|..+.+ +.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 99999999999999999999999999999884 111111100 111111122256789999999999999 7889
Q ss_pred eEEEEEccCcceeeeeccC------------------------------CC-CcceeEEEEcCCCceEEEeecCCcEEEE
Q 001415 942 QLAIFETTKLECVKQWVPR------------------------------ES-SAPITHATFSCDSQLVYACFLDATVCVF 990 (1082)
Q Consensus 942 ~i~iwd~~~~~~~~~~~~~------------------------------~h-~~~i~~l~~s~dg~~l~t~s~dg~v~vw 990 (1082)
.|++++.++|+.++.+... .| ...-+.++|...|.+|+-++-= -|+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEE
Confidence 9999999999877665311 12 2334567888899999988643 37899
Q ss_pred ecCCceeeeeeCCCe---------ecC--CCC-----CCCCceeeEEEEeCCCCCeEEEEecCCcEEEE
Q 001415 991 SAANLKLRCRINPSA---------YLP--AGV-----SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus 991 d~~~~~~~~~~~~~~---------~~~--~gh-----~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
++.++.+...+.... |.. .+| ......+ .+.+.+ |+.+++++-....++++
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 999988766543111 000 000 0000111 122445 67788888888888888
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.48 E-value=4.6e-07 Score=62.99 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.1
Q ss_pred ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001415 860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898 (1082)
Q Consensus 860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 898 (1082)
|+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00031 Score=72.97 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=127.1
Q ss_pred cEEEeecCCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecc-cceeeee
Q 001415 790 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK 865 (1082)
Q Consensus 790 ~~l~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~ 865 (1082)
..+++|.||+++.+.. .-.|.|.|+..++.+..+.... |.-.-|.+.+-+.+-|.||.+.-..+. .|+...+
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 3467788888888775 3679999999988888776322 222223233457778889999988887 4544322
Q ss_pred ----ecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccC------CCCCCCCCCcEEEEcCCCcE
Q 001415 866 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 866 ----l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~fspdg~~ 934 (1082)
|..-..++ ..-+++.++..++..+-+|.|+--|+......-........ +-.+ ++-..+++++....
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP--GGWQLIAYHAASGR 251 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE---SSS-EEEETTTTE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC--cceeeeeeccccCe
Confidence 11112222 23345556666666778888888777765432222222111 1111 45567899886665
Q ss_pred EEE-E---ecC-------eEEEEEccCcceeeeeccCCCCcceeEEEEcCCCc-eEEEee-cCCcEEEEecCCceeeeee
Q 001415 935 FLV-V---HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1001 (1082)
Q Consensus 935 l~~-~---~d~-------~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~-~l~t~s-~dg~v~vwd~~~~~~~~~~ 1001 (1082)
|.+ - .++ .|-++|+.+++.+..+.. ..++.+|..|.|.+ +|++.+ .++.+.|||..+|+++..+
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 555 2 222 588889999999999886 34688999999887 554443 5789999999999999887
Q ss_pred C
Q 001415 1002 N 1002 (1082)
Q Consensus 1002 ~ 1002 (1082)
.
T Consensus 329 ~ 329 (342)
T PF06433_consen 329 E 329 (342)
T ss_dssp -
T ss_pred h
Confidence 7
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.47 E-value=2.8e-05 Score=81.28 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=135.5
Q ss_pred CCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEE
Q 001415 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459 (1082)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~ 459 (1082)
+|.|..||..+|+.+-+..+ ..-.....+. ..+++.++.+++.++.|..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-----------------~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-----------------GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----------------SSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEEC-----------------CCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 68899999999988764321 1101112211 3346777888889999999999999876533
Q ss_pred EeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEe-ecCCc---CeEEEeeeecCCceEEEEecCCCcE
Q 001415 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 535 (1082)
Q Consensus 460 ~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i 535 (1082)
.+.+ .+....... +. .++.++.++.|+.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 ~~~~---~~~~~~~~~-~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 DLPG---PISGAPVVD-GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp ECSS---CGGSGEEEE-TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred eccc---cccceeeec-cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 2222 211112223 34 3566667889999999999999884 33211 1112222222 3578888889999
Q ss_pred EEEecCCCCceeeecCCCCce-EEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCe-EEEEECCCcceEEEEe
Q 001415 536 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSID 613 (1082)
Q Consensus 536 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~ 613 (1082)
..+|.+++............. ..+....+ ....+.+. ++ .++.++.++. +.+ |+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~ 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSD-----------INGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETT-----------EEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecc-----------cccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence 999999888776665533221 00000000 01111122 23 5666776775 555 999998665333
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCcc
Q 001415 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 614 ~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
.. .+.. ....++..|++++.++.+..||+.+++.
T Consensus 201 -~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 201 -IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 21 1222 2456778888888999999999999843
No 319
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=7.9e-07 Score=90.10 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCC--------ccHHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHH
Q 001415 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI 76 (1082)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l 76 (1082)
+.-+.|+|..||..+||.+||..|-++|++. .++..++++|+.|+...|+...+.-+..-. +....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 4557899999999999999999999999985 137788999999999999877776411111 1122488999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccc
Q 001415 77 RKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1082)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1082)
+.|.|+||++.+++.+|+.+.++.+.|....+.+.++....+|.++....
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999998888899998888888765443
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00064 Score=80.17 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=133.1
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccce
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1082)
..+.++.|..+.+.++.+..+|.|.+-|..+......-.... .|.+++|+||++.++..+..+++.+-.-. - .++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---GISAASWSPDEELLALITGRQTLLFMTKD-F-EPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---ceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cch
Confidence 467777788888889999999999999887765433322222 58999999999999999988887664321 1 111
Q ss_pred eecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccc---cCcccccceeEEEEccCC
Q 001415 655 RTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL---PENLRATKISRLIFTNSG 731 (1082)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~ 731 (1082)
..-.-+... .+.+ ..+.++....-.-+.-..+........... +...-.+.-..+.|-.||
T Consensus 144 ~E~~L~~d~---------------~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 144 AEKPLDADD---------------ERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG 207 (1265)
T ss_pred hcccccccc---------------cccc-ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC
Confidence 000000000 0111 112222222111222111100000000000 000012233468999999
Q ss_pred ceeeec-----ccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee-
Q 001415 732 NAILAL-----ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 805 (1082)
Q Consensus 732 ~~l~~~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s- 805 (1082)
+++++. .....+++||-. +..+..+ ....+.-.+++|-|.|.++++-.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-------------------------e~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTS-------------------------EPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhccc-------------------------CcccccccceeecCCCCeEeeeee
Confidence 988772 233678888654 1111100 01233345799999999998763
Q ss_pred ---CCeEEEEecCCC---eeEEEECCCCCCeeEEEEecCCCcEEEE---EeCCCcEEEEecccc
Q 001415 806 ---GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAI---GMDDSSIQIYNVRVD 860 (1082)
Q Consensus 806 ---dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~las---g~~dg~v~iwd~~~~ 860 (1082)
++.|.+|.-... .....+.....+|..++|+. ++.+||+ ......|++|-+.+.
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCe
Confidence 567999885422 11122233334489999999 8899988 444556999988763
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=9.5e-07 Score=88.26 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=111.7
Q ss_pred EEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCC
Q 001415 844 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 923 (1082)
Q Consensus 844 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 923 (1082)
++.+.+-.|-+-++.+|-. ..|. .++.|.++.|...++++..|...|.|.+.|+..+......+..... |. ..|
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~---Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD---SSV 301 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cC---cch
Confidence 4455577888889888743 3333 5678999999988999999999999999999986333222222221 11 456
Q ss_pred cEEEEcC-CCcEEEE-EecCeEEEEEccCcce---eeeeccCCC--CcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415 924 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLK 996 (1082)
Q Consensus 924 ~~~~fsp-dg~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~h--~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~ 996 (1082)
+++..-. ++.+|.+ +.+|.|++||.+.-++ +.++. || ...-.-+.+.+....++++++|...+||.+..|.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 6666555 5666666 7899999999988887 77777 55 3334444566777889999999999999999999
Q ss_pred eeeeeC
Q 001415 997 LRCRIN 1002 (1082)
Q Consensus 997 ~~~~~~ 1002 (1082)
+++.+.
T Consensus 380 Ll~tip 385 (425)
T KOG2695|consen 380 LLCTIP 385 (425)
T ss_pred eeeccC
Confidence 999887
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=3.2e-07 Score=102.16 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=142.4
Q ss_pred CeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCC--cE
Q 001415 817 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL 894 (1082)
Q Consensus 817 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i 894 (1082)
.+..+++..+....+|++|+- +.+.|++|+..|.|++|++.+|.......+|.++|+-+.-+.||..+.+.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 355567777888999999999 889999999999999999999999999999999999999999998877665433 46
Q ss_pred EEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccC--CCCcceeEEEE
Q 001415 895 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF 971 (1082)
Q Consensus 895 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~ 971 (1082)
.+|++.+-- .....+ ....++.|+.....-+.+ ......+||+.++....++..+ +.+..-+...|
T Consensus 1170 aLW~~~s~~----~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Cccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799987711 111111 345788998875555554 4457899999999887774422 12333477899
Q ss_pred cCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 972 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 972 s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
||+.++++ .||. +||+...+-+.++..-.. ...=.|+|+ |..++.-+ -|||+.+-.
T Consensus 1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~-----------~~~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTD-----------YGGGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCCcceEe---eCce--eeeeccHHHHhhhhhhee-----------cccccccCC-CceEEeec-----hhhhhHHHH
Confidence 99999887 4664 899998887776652111 012346674 55555444 466666544
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.38 E-value=7.7e-05 Score=87.58 Aligned_cols=239 Identities=10% Similarity=0.126 Sum_probs=138.8
Q ss_pred ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
...|.++.|..+...++.+...|.|.+-|... ...... ..-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence 36899999999999999999999888764332 221111 0146789999999999
Q ss_pred CeEEEeeCCeEEEEecCCCeeEEEECCC-----CCCeeEEEEecCCCcEEEEEeCCCcEEEEecccc-eeeeeecccccC
Q 001415 799 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKR 872 (1082)
Q Consensus 799 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~ 872 (1082)
+.++..+.+...++...+..++....-+ .+....+-|-. ....+ -|+ .|.....+.... +......-|..
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~- 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH- 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ecc-hhhhcccccccccccccchhhccC-
Confidence 9999988655444444444444332211 12223333322 11111 111 111111111100 00011111222
Q ss_pred EEEEEEeCCCCEEEEE-----eCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE----EecCeE
Q 001415 873 ITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQL 943 (1082)
Q Consensus 873 V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~----~~d~~i 943 (1082)
=++|.|--||+++|+. ...+.|+|||-+. ..... -.... +.-.+++|-|.|..+++ .+|+.|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~--se~~~------~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNST--SEPVE------GLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhcc--cCccc------ccccceeecCCCCeEeeeeecCCCCcE
Confidence 3568999999999883 2237899999883 22110 01111 22368999999999998 256678
Q ss_pred EEEEccCcceeeeecc--CCCCcceeEEEEcCCCceEEE---eecCCcEEEEecCCcee
Q 001415 944 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKL 997 (1082)
Q Consensus 944 ~iwd~~~~~~~~~~~~--~~h~~~i~~l~~s~dg~~l~t---~s~dg~v~vwd~~~~~~ 997 (1082)
.+|.-+ |-....+.. +....++..++|+.++..||+ ......|++|-+.+..-
T Consensus 269 vffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 269 VFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred EEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 888753 322222221 122445999999999999998 44445599999887653
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=2.9e-05 Score=86.99 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=136.9
Q ss_pred cCCCeEEEee--CCeEEEEecCCCeeEEEECCCC-CCee-------------------EEEEecCCCcEEE-EEeCCCcE
Q 001415 796 KNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAAT-------------------FLAFHPQDNNIIA-IGMDDSSI 852 (1082)
Q Consensus 796 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~v~-------------------~l~~sp~~~~~la-sg~~dg~v 852 (1082)
.||+|+..-. ..+|...+++..++-+.+.... ..+. .+-++| |++.+. ..-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 5888888876 3566666766655544432111 1122 223444 454432 22234567
Q ss_pred EEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc--EEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415 853 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 930 (1082)
Q Consensus 853 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 930 (1082)
.+.|..+.+....+.-- +....+++++||+++++.+.+.. ..+-.+...+......+... ..-++.+
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence 77787776666555432 24466889999999988863221 12222222111000000000 0113456
Q ss_pred CCcEEEEEecCeEEEEEccC-----cceeeeeccCCCCcceeEEEEcCCCceEEEee-cCCcEEEEecCCcee-------
Q 001415 931 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 997 (1082)
Q Consensus 931 dg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s-~dg~v~vwd~~~~~~------- 997 (1082)
+|++... .++.|.+.|..+ .+.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 7887665 467899999988 344444443 45678899999999987776 588999999998663
Q ss_pred -----eeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415 998 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 998 -----~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
..++. + | ..|+...|.+ +|+...+---|..|..|++..
T Consensus 363 ~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33333 1 3 4577899988 578888889999999999987
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.1e-05 Score=90.96 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=131.2
Q ss_pred CCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEE
Q 001415 798 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 876 (1082)
Q Consensus 798 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 876 (1082)
+..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 33444454 678899999988887777655556666665 66899999999999999999999999999999999876
Q ss_pred EEeCCCCEEEEEeC---------CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC--CcEEEEEecCeEEE
Q 001415 877 AFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAI 945 (1082)
Q Consensus 877 ~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd--g~~l~~~~d~~i~i 945 (1082)
.. .|+.|+++|. |.-|+|||++..... ..++.+.+ ..-+.|.|. .+..+++..|+..+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEecccceee
Confidence 65 5899999876 456899999874321 12222222 245777775 34444577888888
Q ss_pred EEccCcce--eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEe
Q 001415 946 FETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 991 (1082)
Q Consensus 946 wd~~~~~~--~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd 991 (1082)
-|..+... ...+......+.+.++++|++|..||.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88433221 12222222345699999999999999999999999997
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.3e-06 Score=86.00 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=151.5
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc--c-eeeeeecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 001415 826 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 901 (1082)
Q Consensus 826 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~--~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~ 901 (1082)
|...|+.+.-+. ..++.+++.||.++.|.-.. | +.+..+..|-+.|.+++.+.|+..+.|.+. |..++++|+..
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 566677776654 57999999999999997543 2 455667889999999999999999999777 99999999988
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEcCC-Cc-EEEEE--ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCce
Q 001415 902 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QI-HFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 977 (1082)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~-~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~ 977 (1082)
.......-+..+.+ -..+..++. -. .++++ .++.+.++|-....|.......-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 44321111111111 122222332 12 34443 678999999887776666666679999999999999999
Q ss_pred EEEeecCCcEEEEecCC------ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 978 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 978 l~t~s~dg~v~vwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+++....|.|.-|..+. .++.-.+.....+-.- ...-..+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99998899999999873 2222222211111111 11114467899999 68999999999999999999998
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.2e-05 Score=76.91 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=70.9
Q ss_pred cccCCCCceeEEEEecCCC-eEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~-~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~v 493 (1082)
++.+|+..|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|... +++.|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6889999999999999777 78889999999999999987665 55566 78999999999877 8999999999999
Q ss_pred EEccCCc
Q 001415 494 WDATNGA 500 (1082)
Q Consensus 494 wd~~~~~ 500 (1082)
+|++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998653
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2.5e-06 Score=59.27 Aligned_cols=34 Identities=24% Similarity=0.604 Sum_probs=32.5
Q ss_pred cccCCCCceeEEEEecCCCeEEEEeCCCeEEEEE
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS 448 (1082)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd 448 (1082)
.+.+|.+.|++++|+|++.+||+++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3789999999999999999999999999999997
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.0012 Score=72.92 Aligned_cols=300 Identities=14% Similarity=0.175 Sum_probs=146.9
Q ss_pred ecCCCeEEEEE--------cCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEE
Q 001415 367 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1082)
Q Consensus 367 spdg~~llasg--------s~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1082)
||||+++|+.- +..+.+.|||+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999766532 224678899998876654 22225688999999999999998
Q ss_pred eCCCeEEEEEccCCceeeEEEEeecc----------------ccCeeEEEecCCCCceEEEEEe-CCCcEEEEEccCCce
Q 001415 439 YSRHIVQIYSYHGGDEVRQHLEIDAH----------------VGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAK 501 (1082)
Q Consensus 439 ~~d~~v~iwd~~~~~~~~~~~~~~~h----------------~~~V~~l~fs~dg~~~~l~s~s-~d~~i~vwd~~~~~~ 501 (1082)
. ++.|.+++..++...+. +..|- -+.-..+-|||||++ |+... ++..|+.+.+..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~--- 132 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPD--- 132 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEE---
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeec---
Confidence 5 57899999887754331 22220 112356889999995 44433 344444443211
Q ss_pred eEEeecCCc---CeEEEeeeecCCceEEEEecCCC--cEEEEecCCCCcee-ee----cCCCCceEEEEEccCCCeeeec
Q 001415 502 QYIFEGHEA---PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLGSRV-DY----EAPGRWCTTMAYSADGTRTYQG 571 (1082)
Q Consensus 502 ~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~-~~----~~~~~~v~~~~~s~d~~~~~~~ 571 (1082)
...... .+..+.. |.+ |...- .+.++|+.+++... .. ......+..+.|.+++.
T Consensus 133 ---~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~----- 196 (353)
T PF00930_consen 133 ---YSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK----- 196 (353)
T ss_dssp ---ESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE-----
T ss_pred ---cCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc-----
Confidence 111111 1222222 111 11112 24556776554321 11 12233455555555554
Q ss_pred ccccceeEEEecCCCCEEEE--Ee---CCCeEEEEECCCcceEEEEec--CCCCCCcCeEEEc-CCC-CEEEEEECCCcE
Q 001415 572 FRKRSLGVVQFDTTKNRFLA--AG---DDFSIKFWDMDSVQLLTSIDA--DGGLPASPRIRFN-KDG-CLLAVSTNDNGI 642 (1082)
Q Consensus 572 ~~~~~i~~~~~~~~~~~l~~--~~---~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s-~dg-~~l~~~~~dg~i 642 (1082)
.++. .. ....+.+.|..++........ .+-...-....+. +++ .+|.....+|.-
T Consensus 197 ----------------~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~ 260 (353)
T PF00930_consen 197 ----------------RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR 260 (353)
T ss_dssp ----------------EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred ----------------EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence 2222 12 123355667766655333322 2211222355554 544 455556677776
Q ss_pred EEEEecCCccceeecccccccccccccccCCCCccccCCCCcee-eecc--CCceeEEEecccCCCCccccccccCcccc
Q 001415 643 KILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRI-TEES--NDKSKVWKLTELSEPNQCRSLRLPENLRA 719 (1082)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 719 (1082)
+++-........+.+......+.. .+.+ .++++.+. ++.. ...-.+|.+.-. .......++...
T Consensus 261 hly~~~~~~~~~~~lT~G~~~V~~-i~~~-------d~~~~~iyf~a~~~~p~~r~lY~v~~~-~~~~~~~LT~~~---- 327 (353)
T PF00930_consen 261 HLYLYDLDGGKPRQLTSGDWEVTS-ILGW-------DEDNNRIYFTANGDNPGERHLYRVSLD-SGGEPKCLTCED---- 327 (353)
T ss_dssp EEEEEETTSSEEEESS-SSS-EEE-EEEE-------ECTSSEEEEEESSGGTTSBEEEEEETT-ETTEEEESSTTS----
T ss_pred EEEEEcccccceeccccCceeecc-cceE-------cCCCCEEEEEecCCCCCceEEEEEEeC-CCCCeEeccCCC----
Confidence 666554433334445444444321 2333 55555553 3333 235566666543 122333333222
Q ss_pred cceeEEEEccCCceeeeccc
Q 001415 720 TKISRLIFTNSGNAILALAS 739 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~ 739 (1082)
.....+.|||++++++....
T Consensus 328 ~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 328 GDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp STTEEEEE-TTSSEEEEEEE
T ss_pred CCceEEEECCCCCEEEEEEc
Confidence 11168999999998776544
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.0002 Score=79.47 Aligned_cols=199 Identities=12% Similarity=0.096 Sum_probs=115.4
Q ss_pred cCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEec
Q 001415 621 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLT 700 (1082)
Q Consensus 621 i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~ 700 (1082)
+.--+++..+++++.|+.-|.+++|+...+........+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~----------------------------------------- 74 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG----------------------------------------- 74 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-----------------------------------------
Confidence 334456677889999999999999987666322211111
Q ss_pred ccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeeccc
Q 001415 701 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 780 (1082)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1082)
....+....++++..++++++..|.|.++.+.. ...++.. ... .
T Consensus 75 -----------------~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~----------------~~t--~ 118 (726)
T KOG3621|consen 75 -----------------ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLD----------------YVT--P 118 (726)
T ss_pred -----------------ccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcce----------------eec--c
Confidence 223445567777888788888888888876653 1111110 111 1
Q ss_pred CCCCCCCCccEEEeecCCCeEEEeeC-CeEEEEecCCC----eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001415 781 TDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 855 (1082)
Q Consensus 781 ~~~~~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 855 (1082)
....|...|++++|++|+..+.+|.+ |+|..-.+.+. -..+.+......|..+.+.. +.+|++...- -.++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc 194 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILC 194 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hhee
Confidence 11227889999999999999999985 99888877761 11233334556777777763 4555544332 3344
Q ss_pred ecccceeeeeecc-ccc-CEEEEEEeCC----CCEEEEEeCCCcEEEEEcCC
Q 001415 856 NVRVDEVKSKLKG-HSK-RITGLAFSHA----LNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 856 d~~~~~~~~~l~~-h~~-~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
+.+.+...+.=+. -.+ .-...+|-|. .+-.+.++.-| .|+|..+-
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 4443321111110 111 1233455543 34455566666 68997664
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=6e-05 Score=84.47 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=130.3
Q ss_pred CCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc
Q 001415 828 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 907 (1082)
Q Consensus 828 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~ 907 (1082)
..+.|++++ +++++.|+.+|.|++++.... . .....|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 346777775 479999999999999997643 3 444446554 56899999999999999999888543221
Q ss_pred eeeeccCCCCCCCCCCcEEEEcCC-----CcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEee
Q 001415 908 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 982 (1082)
Q Consensus 908 ~~~~~~~~~~~~~~~v~~~~fspd-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s 982 (1082)
.-.. ..+.+++++|| .+.++++....+.++.-.-.........+.-.++|.++.| .|.++|-++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1111 45789999998 5667775444477776443322222222234789999999 578888887
Q ss_pred cCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccC
Q 001415 983 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus 983 ~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~ 1046 (1082)
++ -|+|||..+++.+..+.++.-.+.- ...+-.+.|.+ ...|+.| ...+|++..+.
T Consensus 178 d~-Gv~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DD-GVKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CC-CcEEEeccccceeeccCCCCCCCCc----ccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 55 5799999999999988855533321 24455688887 3456554 56678888887
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.15 E-value=0.00085 Score=69.82 Aligned_cols=247 Identities=8% Similarity=0.095 Sum_probs=137.7
Q ss_pred CCCeEEEEECCCcceEEEEecCCC-----CCCcCeEEEcCCCCEEEEEEC--CCcEEEEEecCCccceeecccccccccc
Q 001415 594 DDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTN--DNGIKILATSDGIRLLRTFENLAYDASR 666 (1082)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~s~dg~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1082)
..-.|.+||..+-.....+..... ......++++.||+++++... ..+|.|.|+... +....+.......
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~-- 141 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWL-- 141 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEE--
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEE--
Confidence 345699999999988877655432 123456888999999887643 456888888766 4444443222111
Q ss_pred cccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEe
Q 001415 667 TSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 746 (1082)
.+ ......+.+-+.||.+....+....+......--+ ..........-++...+..++..+-+|.++--
T Consensus 142 ---iy-------P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F-~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 142 ---IY-------PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF-DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp ---EE-------EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES-STTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred ---EE-------ecCCCceEEEecCCceEEEEECCCCCEeEeecccc-CCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence 11 11224577888889888888875433321111111 10011222334455555556667777877776
Q ss_pred eccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEe-e--------C--CeEEEEecC
Q 001415 747 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S--------G--GKISLFNMM 815 (1082)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-s--------d--g~i~iwd~~ 815 (1082)
++....... ..-|...+........ ..+.-.-+++++....|.+. . + ..|.++|+.
T Consensus 211 dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 211 DLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred eccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 665432111 1122222211111001 11233457777655544433 1 1 138999999
Q ss_pred CCeeEEEECCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEecccceeeeeecc
Q 001415 816 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLKG 868 (1082)
Q Consensus 816 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 868 (1082)
+++.+.++.. ...+.+++.+.++..+|++.+ .++.+.+||..+|+.+.++..
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999998873 345789999996666776544 578999999999999988874
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.0008 Score=74.01 Aligned_cols=268 Identities=14% Similarity=0.193 Sum_probs=138.9
Q ss_pred CceEEEEecCCCeEEEEEcCCCcEEEEEccccceee------ee------------ceeeeccCCCCcc------ccccc
Q 001415 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSMP------LQAAL 415 (1082)
Q Consensus 360 ~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~------~~------------~~~~~d~~~~~~~------~~~~~ 415 (1082)
.|+++.|+++... ||+|...|.|.||.+...+.-. .. .-++.|+.....+ .+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999775 8899999999999986654332 00 1122333221111 12224
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeec------cccCeeEEEecC-----CC-CceEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFSH-----PN-KQLCVI 483 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~------h~~~V~~l~fs~-----dg-~~~~l~ 483 (1082)
+....++|++++.| |=.++|+|..+|.+.|.|+.....+.. ..+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999998 556999999999999999977665543 22332 234688888862 22 125788
Q ss_pred EEeCCCcEEEEEcc-C--Ccee----EEeecCCcCeEEEeeeecCCc-------------------eEEEEecCCCcEEE
Q 001415 484 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKENI-------------------QFIFSTALDGKIKA 537 (1082)
Q Consensus 484 s~s~d~~i~vwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 537 (1082)
.|...|.+.+|.+. . +... .....+.++|..+......+| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999875 1 2211 122246677766653211111 12333444677888
Q ss_pred EecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCC
Q 001415 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1082)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1082)
+...+.+...........+..+.+-+-. . ...+..|++-..+|.|+++.+..-+.+........
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 8776655443333111122222221000 0 11223577788999999999999888887765421
Q ss_pred --CCCcCeEEEcCCCCEEEEEECCCcEEEEEe
Q 001415 618 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1082)
Q Consensus 618 --~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~ 647 (1082)
...+....++++|..++..+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 123556788888887665543 34444443
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.00088 Score=74.11 Aligned_cols=295 Identities=14% Similarity=0.135 Sum_probs=149.9
Q ss_pred CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEecCCccceeeccccccccccccc-----
Q 001415 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE----- 669 (1082)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----- 669 (1082)
.+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++.....+..+ ...+.....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHH
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecc
Confidence 46789999999766554433 23578899999999999876 478999988776333333333 111110000
Q ss_pred -c-cC-CCCccccCCCCceeeeccC-CceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEE
Q 001415 670 -N-SK-NGDVRSLADVKPRITEESN-DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 745 (1082)
Q Consensus 670 -~-~~-~~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 745 (1082)
. |. ...+..+||++.++....| ..++.+.+........ ....+..+.+-. +|..+..+.+
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----------~yp~~~~~~YPk------~G~~np~v~l 160 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------QYPEVESIRYPK------AGDPNPRVSL 160 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------SS-EEEEEE--B------TTS---EEEE
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------cCCcccccccCC------CCCcCCceEE
Confidence 0 11 2334469999999876654 4666666554322211 001122233221 2222233333
Q ss_pred eeccccccCCCCCcccccCccccCCCCcceeecccC--CCCCCCCccEEEeecCCCeEEEe-e--C-C--eEEEEecCCC
Q 001415 746 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNPEEAVPCFALSKNDSYVMSA-S--G-G--KISLFNMMTF 817 (1082)
Q Consensus 746 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~l~~~-s--d-g--~i~iwd~~~~ 817 (1082)
| +++..+++....... .......+..+.|+++++.++.. . + . .+.+.|..++
T Consensus 161 ~--------------------v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg 220 (353)
T PF00930_consen 161 F--------------------VVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG 220 (353)
T ss_dssp E--------------------EEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT
T ss_pred E--------------------EEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC
Confidence 2 223333332211111 01135667889999999944433 2 2 2 3777788776
Q ss_pred eeEEEECCC-CC---CeeEEEEe-cCCCcEEEEEeCCCcEEEE--ecccceeeeeecccccCEEE-EEEeCCCCEEE-EE
Q 001415 818 KTMATFMPP-PP---AATFLAFH-PQDNNIIAIGMDDSSIQIY--NVRVDEVKSKLKGHSKRITG-LAFSHALNVLV-SS 888 (1082)
Q Consensus 818 ~~~~~~~~~-~~---~v~~l~~s-p~~~~~lasg~~dg~v~iw--d~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~ 888 (1082)
.+....... .. ......|. +++..+|.....||--+|| +..++. ...+....-.|+. +.++++++.|. ++
T Consensus 221 ~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 221 ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEe
Confidence 554333221 12 23456665 6567777777788855555 555454 3456555666755 67888877665 44
Q ss_pred eCC--CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE
Q 001415 889 GAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 937 (1082)
Q Consensus 889 s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 937 (1082)
..+ ..-.+|.+........+++....+. ...+.|||+|++++.
T Consensus 300 ~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~------~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 300 NGDNPGERHLYRVSLDSGGEPKCLTCEDGD------HYSASFSPDGKYYVD 344 (353)
T ss_dssp SSGGTTSBEEEEEETTETTEEEESSTTSST------TEEEEE-TTSSEEEE
T ss_pred cCCCCCceEEEEEEeCCCCCeEeccCCCCC------ceEEEECCCCCEEEE
Confidence 442 3445554443201111222222211 158999999999887
No 335
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.11 E-value=4.5e-06 Score=51.06 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 001415 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1082)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1082)
+++.+||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00047 Score=78.20 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=136.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEecCCccceeecccccccccccccccCCCCccccCCC-CceeeeccCC-----ceeEE
Q 001415 624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADV-KPRITEESND-----KSKVW 697 (1082)
Q Consensus 624 ~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d~-----~i~iw 697 (1082)
-+|++.+..++.|+.+|.|.+++. ..+..+.+..+...... .+. ..++ ..|++.+.|+ .+++|
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~-~L~--------~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQ-FLY--------ILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhh-Hhh--------cccCceEEEEEeecCCCCceEEEEe
Confidence 457888899999999999888763 32333445444443110 111 2233 4566655554 58999
Q ss_pred EecccCCCC---cc---ccccccCcccccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCC
Q 001415 698 KLTELSEPN---QC---RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 771 (1082)
Q Consensus 698 ~~~~~~~~~---~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1082)
+++...... .. +....+......++..++++.+-+.+++|-.+|.|..+.-+ ..... .
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---------i~RDr-------g 161 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---------ILRDR-------G 161 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---------chhcc-------c
Confidence 998764333 11 22222222356788999999999999999999999887422 11111 1
Q ss_pred CcceeecccCCCCCCCCccEEEeecCCCe-EEEeeCCeEEEEecCCCee-EEEECCCCCCeeEEEEecCCCcEEEEEeCC
Q 001415 772 SGIMMTNDVTDSNPEEAVPCFALSKNDSY-VMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDD 849 (1082)
Q Consensus 772 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~-l~~~sdg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~d 849 (1082)
+ ..... .....+|+.+++..+++. +.++....|.+|.+....+ ...+..+.....|.++++ ....+++++ +
T Consensus 162 s--r~~~~---~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~-~ 234 (933)
T KOG2114|consen 162 S--RQDYS---HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG-S 234 (933)
T ss_pred c--ceeee---ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec-C
Confidence 1 11111 125788999999999987 4555678899999985442 455778888999999998 444344443 3
Q ss_pred CcEEEEecccceeeeeec-ccccCE
Q 001415 850 SSIQIYNVRVDEVKSKLK-GHSKRI 873 (1082)
Q Consensus 850 g~v~iwd~~~~~~~~~l~-~h~~~V 873 (1082)
..+.+|+......-..+. ||....
T Consensus 235 e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 235 EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred ceEEEEcCCCcceeeeecCCCeEEE
Confidence 469999987555444554 555443
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00026 Score=80.21 Aligned_cols=203 Identities=14% Similarity=0.152 Sum_probs=128.2
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccC-EEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCccccc
Q 001415 833 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK 906 (1082)
Q Consensus 833 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~ 906 (1082)
-+|++ ++..+|.|+.+|.|.+.+ .+-+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 29 sc~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 34666 777999999999998887 334555778888777 555555555578999887754 8999998764433
Q ss_pred -ceee---eccCCCCC-CCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccC--cceeeeeccCCCCcceeEEEEcCCCceE
Q 001415 907 -NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLV 978 (1082)
Q Consensus 907 -~~~~---~~~~~~~~-~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~i~~l~~s~dg~~l 978 (1082)
..++ +......+ ...++..++.|.+-+.+|+| .+|.|..+.-+- .+-.+.-..+....+|+.+++-.|++.+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 2333 22221111 23567899999999999997 678888875321 1111222222337899999999999984
Q ss_pred EEeecCCcEEEEecCCcee-eeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 979 YACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 979 ~t~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+.+..-..|.+|.+..... .+.+. +.+ +..-+.+|++.-+ .+++++ +..|.+++...-.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld--------~~G--~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD--------NNG--ISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec--------cCC--ccceeeecCCCCc-cEEEec-CceEEEEcCCCcc
Confidence 4444567899999984432 22222 112 3333666775322 244443 5667888776544
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0043 Score=71.82 Aligned_cols=210 Identities=12% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeec---cccCee--EEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGVN--DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~---h~~~V~--~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 506 (1082)
+..+.+++.++.|.-.|..+|+.+-....-.. +...+. .++.. ++. .++.++.++.|.-+|.++|+.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566677788999999999886653211000 000110 11111 214 47778889999999999999998775
Q ss_pred cCCcC-----eE-EEeeeecCCceEEEEec---------CCCcEEEEecCCCCceeeecCCCCceEEE-EEccCCCeeee
Q 001415 507 GHEAP-----VY-SVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTM-AYSADGTRTYQ 570 (1082)
Q Consensus 507 ~h~~~-----v~-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~d~~~~~~ 570 (1082)
..... +. +..+. . ..++.++ .++.+...|..+++....+.......... .+.+.. ...
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~- 211 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--K--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW- 211 (488)
T ss_pred CCCCcCcceEecCCCEEE--C--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence 43221 11 11111 1 2455553 36788899999888877665432111000 000000 000
Q ss_pred ccccc-ceeEEEecCCCCEEEEEeCCC------------------eEEEEECCCcceEEEEecCCCCC----CcCeEEEc
Q 001415 571 GFRKR-SLGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN 627 (1082)
Q Consensus 571 ~~~~~-~i~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~i~~~~~s 627 (1082)
+.... .....++++.+..++.++.++ .|.-+|..+|+....++...+.. ......+.
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence 00011 112345555556677776554 68888999998887765322100 00001111
Q ss_pred ----CCCC---EEEEEECCCcEEEEEecCC
Q 001415 628 ----KDGC---LLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 628 ----~dg~---~l~~~~~dg~i~iwd~~~~ 650 (1082)
-+|. .+++++.+|.+..+|..++
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCC
Confidence 1232 5666777777777777777
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=7.2e-05 Score=81.78 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=68.9
Q ss_pred CcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE
Q 001415 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1082)
Q Consensus 348 ~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1082)
.+.....+...+.|.|++++|+.++ ++.|..||+|++||...+..... .+.-..+.++
T Consensus 249 qrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~~---------------------ka~~~P~~ia 306 (545)
T PF11768_consen 249 QRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLLA---------------------KAEFIPTLIA 306 (545)
T ss_pred eEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeeee---------------------eecccceEEE
Confidence 3334566679999999999999996 89999999999999987644431 2334688999
Q ss_pred EecCCCeEEEEeCCCeEEEEEccCC
Q 001415 428 WSPDGSLFGVAYSRHIVQIYSYHGG 452 (1082)
Q Consensus 428 ~spdg~~las~~~d~~v~iwd~~~~ 452 (1082)
|+|+|..+++|+..|.+.+||+.-.
T Consensus 307 WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 307 WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999998754
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.0074 Score=64.30 Aligned_cols=287 Identities=15% Similarity=0.108 Sum_probs=130.1
Q ss_pred EEEecCCCeEEEEEcCCCc--EEEEEccccceeeeeceeeeccCCCCcccccccccCCC-CceeEEEEecCCCeEEEEeC
Q 001415 364 MDFHPVQQTLLLVGTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYS 440 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~ 440 (1082)
=+|.+||++||+++..||. +.+-|+++++..+ |.... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3689999999998888765 6666888887765 22222 22335678899999887766
Q ss_pred CCeEEEEEccCCceeeEEEEeeccccCeeEEEec--CCCCceEEEEEe----------------------CCCcEEEEEc
Q 001415 441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLCVITCG----------------------DDKTIKVWDA 496 (1082)
Q Consensus 441 d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs--~dg~~~~l~s~s----------------------~d~~i~vwd~ 496 (1082)
+..|+-.|+.+.+... .+.-..+.+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7789999999977543 233344455456664 3455 333221 1234556677
Q ss_pred cCCceeEEeecCCcCeEEEeeeecCCceEEEEecC---CCc-EEEEecCCCCcee-eec--CCCCceEEEEEccCCCeee
Q 001415 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGK-IKAWLYDNLGSRV-DYE--APGRWCTTMAYSADGTRTY 569 (1082)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~-~~~--~~~~~v~~~~~s~d~~~~~ 569 (1082)
.+|+....+. -...+..+.|+|..+ .+|+-|-+ +.. -|+|-+++..... .+. .....+.-=-|.+||..++
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7777555444 455677788887654 45555432 221 3677655433221 111 1122333345777776322
Q ss_pred ecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECCC---------
Q 001415 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN--------- 640 (1082)
Q Consensus 570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg--------- 640 (1082)
.....+ ++.+..|.-+|..+++........ ....+..++||++++-=+.|.
T Consensus 254 ---------y~~~~~-------~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~ 313 (386)
T PF14583_consen 254 ---------YDSYTP-------GGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGG 313 (386)
T ss_dssp ---------EEEEET-------TT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE------------
T ss_pred ---------EEeecC-------CCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCcccccccc
Confidence 222222 223445566677776554333221 233456678888776433332
Q ss_pred -------cEEEEEecCCccceeecccccc--cccccccccCCCCccccCCCCceeee-ccCCceeEEEe
Q 001415 641 -------GIKILATSDGIRLLRTFENLAY--DASRTSENSKNGDVRSLADVKPRITE-ESNDKSKVWKL 699 (1082)
Q Consensus 641 -------~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~iw~~ 699 (1082)
.|++++...+.. ..+..|.. .+....-...-....++||++.++.. ...|...||-+
T Consensus 314 ~~~~~~p~i~~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 314 YKIENDPWIYLFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -------EEEEEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceecCCcEEEEeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 344556554421 11111210 00000001112445569999988654 44565555543
No 341
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.99 E-value=7.9e-06 Score=62.69 Aligned_cols=52 Identities=33% Similarity=0.523 Sum_probs=42.8
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCH
Q 001415 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90 (1082)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~ 90 (1082)
+..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999988544322323 49999999999999998764
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00058 Score=76.92 Aligned_cols=187 Identities=12% Similarity=0.157 Sum_probs=124.4
Q ss_pred cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415 720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 799 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 799 (1082)
..+++++++ ++.++.++.+|.+++++.+... .+. + .|... ..+|.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------~~~------~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------KTN------F---DHSSS------ILEGE 84 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc------------------ccc------c---ccccc------ccCCc
Confidence 345555554 4568888899999988654211 000 0 02211 56899
Q ss_pred eEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecC----CCcEEEEEeCCCcEEEEeccc--ceeeeeecccccC
Q 001415 800 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKR 872 (1082)
Q Consensus 800 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~~--~~~~~~l~~h~~~ 872 (1082)
++++++ ||+|.|..+.+.+...++. ....+.+++++|+ ..+.+++|+..| +.++.-.= .+.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999998 6999999988877776665 4567999999994 256788899888 77775331 1111245566789
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415 873 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 949 (1082)
Q Consensus 873 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~ 949 (1082)
|.++.|. |.++|-++.+| |+|||+.+++.... ++.+.....+......+.|.++.+ |+.|-..+|+|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999996 88999999888 89999998654321 222222222223446788888766 455555567777766
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00069 Score=75.30 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=94.5
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
|...|.--+++..+++ ++.|+.-|.+++|+-.+++.+... ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 5566777778888885 999999999999999888766521 233456777788999999999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEE---eeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~---~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~ 498 (1082)
.|+..|.|.++-+..+........ -..|...|++++|++|+. .+++|...|+|.+-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 999999999998876433221111 123678999999999999 699999999999888776
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0003 Score=72.49 Aligned_cols=230 Identities=12% Similarity=0.086 Sum_probs=132.0
Q ss_pred EEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCC-CEEEE
Q 001415 809 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS 887 (1082)
Q Consensus 809 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s 887 (1082)
+++.+..+.+....+..+...|..++|||....++..++.+..|.|.|+.+..++.....| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6677766666666777788889999999955558999999999999999999998888888 889999998765 56777
Q ss_pred EeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEE------EEcCCCcEEEEEecCeEEEEEccC--cceeeeecc
Q 001415 888 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV------QFHQDQIHFLVVHETQLAIFETTK--LECVKQWVP 959 (1082)
Q Consensus 888 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~fspdg~~l~~~~d~~i~iwd~~~--~~~~~~~~~ 959 (1082)
|...|.|.|||+...+-....+...... .+|..+ ...+.|.+|+.+. -.+..|++.. +......+.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCccccc
Confidence 7789999999998754322211111110 122222 2233455554422 2244554421 112121221
Q ss_pred CCCCcceeEEEEcCCCceEEEeecC-C------cEE-EEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCe-
Q 001415 960 RESSAPITHATFSCDSQLVYACFLD-A------TVC-VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE- 1030 (1082)
Q Consensus 960 ~~h~~~i~~l~~s~dg~~l~t~s~d-g------~v~-vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~- 1030 (1082)
+..+...++.+.+-...++..... . .|- --|..+|..++..+...+ |-...........+.+.|+++
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs~~~kl~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GSKQTKLSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CCcccccccccceeccccccEE
Confidence 113445555555544444433322 1 111 123345555554332221 100000111122233334555
Q ss_pred EEEEecCCcEEEEccCCCC
Q 001415 1031 FALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1031 l~s~~~dg~v~vW~~~~~~ 1049 (1082)
+.+|++.+.+.+||+.+.+
T Consensus 404 v~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFE 422 (463)
T ss_pred EEecCCcceeEEeccchhh
Confidence 4556677899999999998
No 345
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.96 E-value=0.00016 Score=82.19 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=128.7
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
++..++.|+-...+..+|+.+.+..+ ...-..+.|.-+. .+++ ++.+|...|+|.+-|..+-+.++++.+|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45667778877888899999887655 2222233455554 3566 799999999999999999999999999999
Q ss_pred CeEEEeeeecCCceEEEEecC---------CCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEE
Q 001415 511 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
.|..+.. .|+.|++||. |..|++||++..+....+..+-++ .-+.|.|.-
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl---------------- 277 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL---------------- 277 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc----------------
Confidence 9988764 3367888874 556899999876655433332221 111222211
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCC-cce-EEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEe
Q 001415 582 FDTTKNRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~ 647 (1082)
-.++++++..|...+-|..+ ..+ ......+.....+..+.++++|+.++.|..+|.|.+|.-
T Consensus 278 ----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 278 ----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ----cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 12577888889888888332 111 222222223335889999999999999999999999973
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.0095 Score=68.96 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=90.6
Q ss_pred EEEecCCCcEEEEEeCCC------------------cEEEEecccceeeeeecc--ccc----CEEEEEEe----CCCC-
Q 001415 833 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN- 883 (1082)
Q Consensus 833 l~~sp~~~~~lasg~~dg------------------~v~iwd~~~~~~~~~l~~--h~~----~V~~l~~s----~d~~- 883 (1082)
.++.+ .+.+++.++.++ .|.-+|..+|+.+-..+. |.. ......+. -++.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 455666676665 799999999988766531 210 00011111 2343
Q ss_pred --EEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE------------------EecCeE
Q 001415 884 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL 943 (1082)
Q Consensus 884 --~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~------------------~~d~~i 943 (1082)
.++.++.+|.+...|..+++..=...... ..++.+| +...+. ..++.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 57778889999999999976532211110 1122233 211111 124667
Q ss_pred EEEEccCcceeeeeccCCCC------cceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 944 AIFETTKLECVKQWVPRESS------APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 944 ~iwd~~~~~~~~~~~~~~h~------~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
.-.|..+|+.+-......+. .+...-.....+..|++++.||.++.+|..+|+++-+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 77788888776555432111 111110111256788889999999999999999998866
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00047 Score=76.67 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=96.5
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcC--C-CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEe
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--V-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~--d-g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1082)
.+..-...+..-+|+|+++.+....-. . ..+.++|+++++.....+ -.+.-..-+||
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fs 246 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFS 246 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCC
Confidence 344456778888999999974443222 2 459999999887665322 22344556899
Q ss_pred cCCCeEEEEe-CCCe--EEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCc--EEEEEccCCceeEE
Q 001415 430 PDGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYI 504 (1082)
Q Consensus 430 pdg~~las~~-~d~~--v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~--i~vwd~~~~~~~~~ 504 (1082)
|||++||.+. .||. |.+.|+.++...+ +..-.+.-..-.|+|||+. ++++.+..|. |.+.|++.+.. ..
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~r 320 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TR 320 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eE
Confidence 9999998775 4554 6666777766322 3333333347789999997 4445555665 55555554444 33
Q ss_pred eecCCcCeEEEeeeecCCceEEEEecC-CCc--EEEEecCCCC
Q 001415 505 FEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLG 544 (1082)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~ 544 (1082)
+....+.-..-.|+ ++|.+++..+. +|. |.+.|+.+..
T Consensus 321 iT~~~~~~~~p~~S--pdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 321 LTFSGGGNSNPVWS--PDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eeccCCCCcCccCC--CCCCEEEEEeccCCceeeEEeccCCCC
Confidence 33222222233444 45566666664 344 5555554444
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.0066 Score=68.03 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=122.2
Q ss_pred EEeecCCCeEEEeeCC------------eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccc
Q 001415 792 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 859 (1082)
Q Consensus 792 l~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 859 (1082)
++.+|.|..+|...+. .|.||+.. |+.+..+.-..+.+.++.|+. +..++ +-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEELV-VVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCeEE-EEEcCCEEEEEeCCC
Confidence 4556666666665544 58899875 455555443348899999997 55454 566899999999863
Q ss_pred ce------eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccc-cceee-eccCCCC---CCCCCCc-EEE
Q 001415 860 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT---PTAQSDT-RVQ 927 (1082)
Q Consensus 860 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~-~~~~~~~---~~~~~v~-~~~ 927 (1082)
.. .+....-....+....+..+|-.+.+ .++.+ |-+...... ..+.. ..+.... .. .... ...
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~--~~v~n~~~~~~~~~~~~~p~~~~~~~~~-~~~~~i~~ 185 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRF--YVVNNIDEPVKLRRLPEIPGLWTKFHWW-PSWTVIPL 185 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeE--EEEeCccccchhhccccCCCcccccccc-cccccceE
Confidence 32 11111222233333344445633333 34433 333332211 10111 1111100 00 0111 133
Q ss_pred EcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCee
Q 001415 928 FHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1006 (1082)
Q Consensus 928 fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~ 1006 (1082)
++.+....+. ..++.+.+.+....+. . ...+++..|++||+|++||.-..+|.+.|.+.+-.+.++.+...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-- 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-- 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--
Confidence 4555544444 4445555444322211 1 12468999999999999999999999999988777777766622
Q ss_pred cCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEcc
Q 001415 1007 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus 1007 ~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~ 1045 (1082)
....+..+.|+.+| -++..- ...|.+...
T Consensus 258 -------~~~~p~~~~WCG~d--av~l~~-~~~l~lvg~ 286 (410)
T PF04841_consen 258 -------SKSPPKQMAWCGND--AVVLSW-EDELLLVGP 286 (410)
T ss_pred -------cCCCCcEEEEECCC--cEEEEe-CCEEEEECC
Confidence 11345567777532 222222 445555543
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.90 E-value=0.014 Score=59.56 Aligned_cols=163 Identities=8% Similarity=0.111 Sum_probs=97.7
Q ss_pred CCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeE
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1082)
Q Consensus 356 ~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1082)
+-..++..++|.|+...|+++....+.|...+. +|+.+.+.. +.+ -+..-.|++..++.++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYV 79 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEE
Confidence 345679999999998888999999999998987 477776532 223 3478889998888888
Q ss_pred EEEeCCCeEEEEEccCCce---eeE--EEEee---ccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC---CceeEE
Q 001415 436 GVAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYI 504 (1082)
Q Consensus 436 as~~~d~~v~iwd~~~~~~---~~~--~~~~~---~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~---~~~~~~ 504 (1082)
++.-.++.+.++++..... ... ...+. .+...+-.++|.+.++. |+.+-...-..++.+.. +..+..
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceee
Confidence 7776789999998843221 111 11111 24567899999999885 44445555566666653 222221
Q ss_pred e--------ecCCcCeEEEeeeecCCceEEEEecCCCcEEEEec
Q 001415 505 F--------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540 (1082)
Q Consensus 505 ~--------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 540 (1082)
. ......+.++++++. .+++++.......|..+|.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR 200 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred ccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence 1 123345788888875 4578888888888888884
No 350
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.89 E-value=1.9e-05 Score=52.73 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001415 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1082)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1082)
.++++.++|+|||..+||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.0018 Score=65.84 Aligned_cols=215 Identities=11% Similarity=0.118 Sum_probs=116.2
Q ss_pred EEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc-ccCEEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001415 821 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSS 899 (1082)
Q Consensus 821 ~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 899 (1082)
+.+.+....+..++|.|+++.++|+....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3455666679999999966788899999999998886 47777766432 356788999988888777767899999998
Q ss_pred CCccc--ccceeeeccCCC-CCCCCCCcEEEEcCCCcEEEEEec-CeEEEEEccC---cceeee-----ec-cCCCCcce
Q 001415 900 DGWEK--QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVVHE-TQLAIFETTK---LECVKQ-----WV-PRESSAPI 966 (1082)
Q Consensus 900 ~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~~~d-~~i~iwd~~~---~~~~~~-----~~-~~~h~~~i 966 (1082)
..... ..........+. .........++|.|.+..|+++.+ .-..+|.+.. ...+.. +. .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 44221 111111111111 112246789999998777766544 3456666543 111111 11 11234568
Q ss_pred eEEEEcCC-CceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCC---CCCceeeEEEEeCCCCCeEEEEecCCcEEE
Q 001415 967 THATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1042 (1082)
Q Consensus 967 ~~l~~s~d-g~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~---~~~v~~~~~~~~~~d~~~l~s~~~dg~v~v 1042 (1082)
.++++.|. |.+++.......|..+| .+|+.+..+. +..|.. .....+-.++|.+ +|++.++ ++-+...+
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~----L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS----LDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYR 246 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-----STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE----eCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEE
Confidence 89999986 45666677788899999 7787776655 222210 1113456799998 5755544 45554444
Q ss_pred E
Q 001415 1043 F 1043 (1082)
Q Consensus 1043 W 1043 (1082)
+
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 3
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0019 Score=72.10 Aligned_cols=224 Identities=12% Similarity=0.122 Sum_probs=116.0
Q ss_pred ccceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 719 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 719 ~~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
......+.++|+|+.+++ +.+|...++.... .... ..+....++|.+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~----------------------~r~k--------~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA----------------------WRNK--------AFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTT----------------------TEEE--------EEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC----------------------Cccc--------ccCceeEEEEecCc
Confidence 344688999999998877 6666666664110 0000 23345678898877
Q ss_pred CeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEE
Q 001415 799 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 878 (1082)
Q Consensus 799 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 878 (1082)
++.+.-..++|.|+.--+......+... ..+..+- .|.+|+..+.+ .|.+||+.+++.+.++... +|..+.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 7555555788999633222222233321 1233332 26677766544 8999999999999998844 3899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCc------c-cccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCc
Q 001415 879 SHALNVLVSSGADSQLCVWSSDGW------E-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 951 (1082)
Q Consensus 879 s~d~~~l~s~s~Dg~i~vwd~~~~------~-~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~ 951 (1082)
+++|.+++..+.+. +.+++.+.. + -....+....+.. ..|.+.+|..| .++.++.++++. +-.|
T Consensus 153 s~~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~~lkY--l~~G 223 (443)
T PF04053_consen 153 SDDGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSNHLKY--LVNG 223 (443)
T ss_dssp -TTSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEE--EETT
T ss_pred ECCCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCCeEEE--EEcC
Confidence 99999999998664 778776542 0 0000111111101 46788999888 344444446666 3334
Q ss_pred ce--eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCc
Q 001415 952 EC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 995 (1082)
Q Consensus 952 ~~--~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~ 995 (1082)
+. +..+ ..++.=+.+.+....+.....|+.|..+.++..
T Consensus 224 e~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 224 ETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 33 2222 245666677777778888888888888876643
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.86 E-value=0.00022 Score=78.15 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=89.5
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEE----cCCCc----EEEEEccccceeeeeceeeeccCCCCcccccccccCCCCc
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasg----s~dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1082)
+.....-+....++.||-...+.+.+- +.+|. -.+|++..++. +...+ .--.....
T Consensus 198 vL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsv---------------tsipL~s~ 261 (545)
T PF11768_consen 198 VLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSV---------------TSIPLPSQ 261 (545)
T ss_pred EEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEE---------------EEEecCCc
Confidence 333334455667888887555444442 23444 35666654432 22111 12356679
Q ss_pred eeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCcee
Q 001415 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1082)
Q Consensus 423 V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~ 502 (1082)
|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-+...
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCccc
Confidence 999999999999999999999999999876432 223345678999999999 8999999999999998755443
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.85 E-value=0.0044 Score=69.22 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=118.8
Q ss_pred CCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeee
Q 001415 786 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 865 (1082)
Q Consensus 786 ~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 865 (1082)
...+..+.++|+|++++++++|...|+.....+.... +.....+|.+ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3457899999999999999999999998555444332 2356788998 665 55566688999974333333233
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEE
Q 001415 866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 945 (1082)
Q Consensus 866 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~i 945 (1082)
+... ..+..|-. |.+|...+.+ .|.+||+.+++. +..... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-----i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-----IRRIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E-----EEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce-----eeEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 12444433 8888877655 799999999653 222221 2368999999999999988888888
Q ss_pred EEccCc-----------ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee--eeeeCCCeecCCCCC
Q 001415 946 FETTKL-----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGVS 1012 (1082)
Q Consensus 946 wd~~~~-----------~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~gh~ 1012 (1082)
++.+.. ..+.... .-...|.+.+|-.| -++.|. .. .++- +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld---------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD---------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S----------
T ss_pred EEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC----------
Confidence 876443 0111111 11457888888766 444443 33 6654 333332 22222
Q ss_pred CCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1013 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1013 ~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
...+ -+.+.++ .+.+.....|+.|..+.+...+
T Consensus 233 -~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 -KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -S--E--EEEEETT-TTEEEEE-TT--EEEEE--HHH
T ss_pred -CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHHH
Confidence 2244 4555663 4678888899999888776554
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.84 E-value=0.011 Score=63.05 Aligned_cols=290 Identities=13% Similarity=0.070 Sum_probs=138.5
Q ss_pred eEEEEccCCceeeeccc-CCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeE
Q 001415 723 SRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 801 (1082)
Q Consensus 723 ~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 801 (1082)
..-+|.+||+.|+.++. +|.-.+|-+ |+.++...+..-. .........++++++.+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDG---PGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---S---S-B-TTT-EE-TTSSEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccC---CCCCccceEEecCCCeE
Confidence 34567889977766555 554444432 4555555553211 11223356677888887
Q ss_pred EEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEe-cCCCcEEEEEeC----------------------CCcEEEEec
Q 001415 802 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMD----------------------DSSIQIYNV 857 (1082)
Q Consensus 802 ~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~lasg~~----------------------dg~v~iwd~ 857 (1082)
+... +..|+-.|+.+.+....+......+....|. ..|+..++-.-. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7654 5689999999988777776666666556664 225555442211 123455566
Q ss_pred ccceeeeeecccccCEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCC
Q 001415 858 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 932 (1082)
Q Consensus 858 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 932 (1082)
.+|+....+. -..-+..+.|||....+++-+..| .-|+|-+++.......+.+... ...+..=-|+|||
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG 249 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDG 249 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTS
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCC
Confidence 6776544443 345567789999776666554433 2377877653322222222111 1345666799999
Q ss_pred cEEEE-Ee-----cCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCC----------------cEEEE
Q 001415 933 IHFLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVF 990 (1082)
Q Consensus 933 ~~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg----------------~v~vw 990 (1082)
..|.. +. +..|.-+|+.+++...... ...-..+..++||++++-=+.|. -|+++
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 98887 32 3357777888876543222 22445667789999887544432 46678
Q ss_pred ecCCceeeeeeCC-Ceec-CCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCC
Q 001415 991 SAANLKLRCRINP-SAYL-PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 991 d~~~~~~~~~~~~-~~~~-~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
++..+........ ..+. ..|+ .. +.--...|+|++...|.++...|...|+-++-
T Consensus 326 ~~~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 326 DVEAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp ETTTTEEEEEEE-------BTTB-SS-TT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred ccccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 8887765422110 1111 1111 11 11124899995434466777778777765543
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0017 Score=72.30 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=108.1
Q ss_pred eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEe---CC-CcEEEEecccceeeeeecccccCEEEEEEeCCCC
Q 001415 808 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 883 (1082)
Q Consensus 808 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 883 (1082)
.+.+-|.+ +.....+......+..-+|+| ++..++... .. ..++++++.+++....+. -.+.-...+|||||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34455544 555555555556677788999 666554332 22 359999999886544433 222234578999999
Q ss_pred EEEEE-eCCCc--EEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecC----eEEEEEccCcceeee
Q 001415 884 VLVSS-GADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ 956 (1082)
Q Consensus 884 ~l~s~-s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~----~i~iwd~~~~~~~~~ 956 (1082)
.|+.+ ..||. |.+.|+.++.. .+ +....+ .-..-.|+|||++++..+|. .|.+++.+.+...+.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcc--ee-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 87755 45665 55556666442 12 222222 22467899999999995543 477778776665332
Q ss_pred eccCCCCcceeEEEEcCCCceEEEeecC-Cc--EEEEecCCcee
Q 001415 957 WVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKL 997 (1082)
Q Consensus 957 ~~~~~h~~~i~~l~~s~dg~~l~t~s~d-g~--v~vwd~~~~~~ 997 (1082)
.. .+.. -..-.|||||++|+..+.. |. |.+.|+.++..
T Consensus 322 T~-~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 322 TF-SGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred ec-cCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 22 1211 1267899999999988753 44 77777776664
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.0037 Score=68.89 Aligned_cols=273 Identities=11% Similarity=0.140 Sum_probs=136.9
Q ss_pred ceeEEEEccCCceeeecccCCeEEEeeccccccCC-CCCccc-----------ccCccccCC--------CCcceeeccc
Q 001415 721 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS-SGKATA-----------SVAPQLWQP--------PSGIMMTNDV 780 (1082)
Q Consensus 721 ~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~-----------~~~~~~~~~--------~~~~~~~~~~ 780 (1082)
.|..+.|.++...++++...|.+.+|.+....... ...... ...-.+.|. +.|......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998889999999999999988765443 110000 001111121 1232222222
Q ss_pred CCCCCCCCccEEEeecCCCeEEEee-CCeEEEEecCCCeeEEEE--CC------CCCCeeEEEEec----CCC---cEEE
Q 001415 781 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF--MP------PPPAATFLAFHP----QDN---NIIA 844 (1082)
Q Consensus 781 ~~~~~~~~i~~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~--~~------~~~~v~~l~~sp----~~~---~~la 844 (1082)
.. ..++|++++.|.= -++|.|. +|.+.|.|++....+..- .. ....++++.|+- +|+ -.++
T Consensus 83 ~~--~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 4788999999744 4888887 699999999877776552 12 233578888862 133 4788
Q ss_pred EEeCCCcEEEEeccc---ceeeeeec----ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccccccee--e-eccC
Q 001415 845 IGMDDSSIQIYNVRV---DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--L-QIPT 914 (1082)
Q Consensus 845 sg~~dg~v~iwd~~~---~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~-~~~~ 914 (1082)
+|+..|.+.+|.+.- +.....+. .+.++|..| ...+.++++...... + ....
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998752 11111111 122222222 222333332211000 0 0000
Q ss_pred CCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEc-----CCCceEEEeecCCcEEE
Q 001415 915 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 989 (1082)
Q Consensus 915 ~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s-----~dg~~l~t~s~dg~v~v 989 (1082)
+. +...+++++++..++++...+.+...... ........+++- ..+..|++-..+|.|++
T Consensus 222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 00 11235667889999999988877766544 222233444552 35667888889999999
Q ss_pred EecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEec
Q 001415 990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1036 (1082)
Q Consensus 990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~ 1036 (1082)
|.+...+.+..+...... +.-......+++ +|+.++-.+.
T Consensus 287 ~SLP~Lkei~~~~l~~~~------d~~~~~~ssis~-~Gdi~~~~gp 326 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPL------DSRRLSSSSISR-NGDIFYWTGP 326 (395)
T ss_dssp EETTT--EEEEEE-SS---------HHHHTT-EE-T-TS-EEEE-SS
T ss_pred EECCCchHhhcccCCCcc------ccccccccEECC-CCCEEEEeCc
Confidence 999999999877632110 001112345566 4776665543
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.15 Score=59.36 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=42.9
Q ss_pred CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc
Q 001415 807 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 869 (1082)
Q Consensus 807 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 869 (1082)
|.|.-+|+.+++.................. .+.+++.++.+|.++.+|..+|+.+-..+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 458888999988887765333222222222 3447777888999999999999998777643
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0098 Score=66.25 Aligned_cols=207 Identities=13% Similarity=0.136 Sum_probs=145.0
Q ss_pred CccEEEeecCCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEeccccee
Q 001415 788 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV 862 (1082)
Q Consensus 788 ~i~~l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~ 862 (1082)
....+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++.+.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678888888555443 5889999988777766655333 678899999 5544444443 68999999999888
Q ss_pred eeeecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEec-
Q 001415 863 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE- 940 (1082)
Q Consensus 863 ~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d- 940 (1082)
+.....-..+ ..++++|+|+.+..+. .+++|.+.|.......+ ...............+.++|+|.++.+..+
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775544445 8899999999766555 78899999977743321 000000111134578999999997776322
Q ss_pred ---CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-CcEEEEecCCceeeeeeC
Q 001415 941 ---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 941 ---~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-g~v~vwd~~~~~~~~~~~ 1002 (1082)
+.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 47888888888776652222222 56678999999999888544 889999999988887655
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.62 E-value=2.1e-05 Score=85.55 Aligned_cols=204 Identities=15% Similarity=0.244 Sum_probs=127.7
Q ss_pred CCCCceEEEEecCCC-eEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec-CCCe
Q 001415 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1082)
Q Consensus 357 h~~~v~~~~~spdg~-~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1082)
....+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....++++|++ |..+
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 345677777765544 58999999999998877542211 1224678889999999999 8888
Q ss_pred EEEEe----CCCeEEEEEccCCce--eeEEEEeec-cccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCce-eEEee
Q 001415 435 FGVAY----SRHIVQIYSYHGGDE--VRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFE 506 (1082)
Q Consensus 435 las~~----~d~~v~iwd~~~~~~--~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~ 506 (1082)
||.|- .|..+.|||+.++-. .... .+.+ -.....+++|-.+.+ ++.+|...+.+.++|++.... ...+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 98874 356799999988721 1111 1222 344666889987777 788898888999999873321 1122
Q ss_pred cCCcCeEEEeeeecCCceEEEEecCCCcEEEEe-cCCCCceeeecCC-----CCceEEEEEccCCCeeeecccccceeEE
Q 001415 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1082)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~~~~~~~~~~i~~~ 580 (1082)
.+..+..+.+.|-. +.++++-. ||.|.+|| ....+.......+ ...+..++|.|...
T Consensus 194 -nTk~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------------- 256 (783)
T KOG1008|consen 194 -NTKYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------------- 256 (783)
T ss_pred -hhhhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence 12234444444422 24666655 99999999 4443332211111 22366666666543
Q ss_pred EecCCCCEEEEEe-CCCeEEEEECC
Q 001415 581 QFDTTKNRFLAAG-DDFSIKFWDMD 604 (1082)
Q Consensus 581 ~~~~~~~~l~~~~-~dg~i~iwd~~ 604 (1082)
..+++.. ..++|+++|+.
T Consensus 257 ------glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 ------GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ------chhhhhccCcceEEEeccc
Confidence 1344443 56788988875
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.60 E-value=0.11 Score=60.32 Aligned_cols=149 Identities=12% Similarity=0.065 Sum_probs=85.6
Q ss_pred cEEEEecccceeeeeecccccCEE---------EEEEeCCCC---EEEEEeCCCcEEEEEcCCcccccceee-e--cc--
Q 001415 851 SIQIYNVRVDEVKSKLKGHSKRIT---------GLAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL-Q--IP-- 913 (1082)
Q Consensus 851 ~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~--~~-- 913 (1082)
.|.-.|+++|+..-.++.....++ -+.+..+|+ .++.++.+|.+.+.|-.+++....... . ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 566678888887766553222111 122334676 788999999999999999876321000 0 00
Q ss_pred --C---CCC--------------------C-CCC--CCcEEEEcCCCcEEEE-Eec------------------------
Q 001415 914 --T---GRT--------------------P-TAQ--SDTRVQFHQDQIHFLV-VHE------------------------ 940 (1082)
Q Consensus 914 --~---~~~--------------------~-~~~--~v~~~~fspdg~~l~~-~~d------------------------ 940 (1082)
. +.. + ..+ .=..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0 000 0 000 0022566666555544 111
Q ss_pred ---------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 941 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 941 ---------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
+.|.-+|+.+|+..-...... ....+. +.-.|..++.++.||.++.+|..+|+.+-.++
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 347777888887765444211 111111 22255577778889999999999999998876
No 362
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00054 Score=71.21 Aligned_cols=108 Identities=10% Similarity=0.174 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----------HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHH
Q 001415 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF 74 (1082)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~ 74 (1082)
+.|..+|..++..+|..+.+..|.+|+|...+ +..+-++|..|+-.-|++.+..-. .+.+ + ..++-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~-~-~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE-K-SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc-c-cccHHH
Confidence 44689999999999999999999999998752 778999999999999999998752 1111 1 124889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhccccccccCHHHHHHH
Q 001415 75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEI 115 (1082)
Q Consensus 75 ~l~~~~~lell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l 115 (1082)
.|.++.|++++..|... +|+.+.|+.++||........+.+
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl 237 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL 237 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence 99999999999999888 999999999999966554444433
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.54 E-value=0.0059 Score=71.93 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=94.7
Q ss_pred CceEEEEEeCCCcEEEEEccCCceeEEeecCCcC-eEEEeeeec---CCceEEEEecCCCcEEEEecCCCCceeee-cCC
Q 001415 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAP 552 (1082)
Q Consensus 478 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~ 552 (1082)
+.++|........|+-.|++.|+.+..+..|... |..++-... -+....+.|-.+..+..||.+-....... ..+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334555556788999999999999999887754 666653211 01235677778899999999854321110 000
Q ss_pred CCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCE
Q 001415 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632 (1082)
Q Consensus 553 ~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~ 632 (1082)
.+ .......|++-+.+| ++|+|+.+|.||+||--..+....+.+-+ .+|..+..+.||++
T Consensus 573 -------~Y----------~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 573 -------QY----------SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGKW 632 (794)
T ss_pred -------cc----------ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCcE
Confidence 00 112234444444444 69999999999999954333223333333 48999999999999
Q ss_pred EEEEECCCcEEEEEe
Q 001415 633 LAVSTNDNGIKILAT 647 (1082)
Q Consensus 633 l~~~~~dg~i~iwd~ 647 (1082)
|++.+. ..+.+++.
T Consensus 633 ilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 633 ILATCK-TYLLLIDT 646 (794)
T ss_pred EEEeec-ceEEEEEE
Confidence 987765 55666664
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.50 E-value=0.074 Score=60.67 Aligned_cols=248 Identities=15% Similarity=0.137 Sum_probs=121.7
Q ss_pred ceEEEEecCCCeEEEEEcCCCc----EEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 361 PMSMDFHPVQQTLLLVGTNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 361 v~~~~~spdg~~llasgs~dg~----i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
+..+++||||++++++-+..|. |++.|+++|+.+.. .+ .. ..-..++|++|++.|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 4467899999986666555554 99999999977653 11 11 1122399999999887
Q ss_pred EEeCCC-----------eEEEEEccCCceeeEEEEeeccccC--eeEEEecCCCCceEEEEEeCC---CcEEEEEccCC-
Q 001415 437 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGDD---KTIKVWDATNG- 499 (1082)
Q Consensus 437 s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~h~~~--V~~l~fs~dg~~~~l~s~s~d---~~i~vwd~~~~- 499 (1082)
....+. .|..|.+.+...-.. ..+.+.... ...+..++|++. +++..... ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEeccccC
Confidence 665332 377777776643211 134443333 568889999996 33333333 34777787764
Q ss_pred ---ceeEEeecCCcCeEEEeeeecCCceEEEEecC---CCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeeccc
Q 001415 500 ---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1082)
Q Consensus 500 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~ 573 (1082)
.....+......+....-+. ++ .+++.... .+.|...++....... ...+.+.++..
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~--------~~~~l~~~~~~------- 326 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAE--------WWTVLIPEDED------- 326 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGG--------EEEEEE--SSS-------
T ss_pred CCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccccc--------ceeEEcCCCCc-------
Confidence 23333333333333322222 22 33333322 3455555555443200 00011111110
Q ss_pred ccceeEEEecCCCCEEEEEe-CC--CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEE----CCCcEEEEE
Q 001415 574 KRSLGVVQFDTTKNRFLAAG-DD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDNGIKILA 646 (1082)
Q Consensus 574 ~~~i~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~----~dg~i~iwd 646 (1082)
..+..+ ...+++|+... .+ ..|+++++..+.....+..... ..|..+...+++..+.... .-+++..||
T Consensus 327 -~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 327 -VSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp -EEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred -eeEEEE--EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 011112 22233454433 33 4588899884444444443322 1344455455555444332 135677777
Q ss_pred ecCCc
Q 001415 647 TSDGI 651 (1082)
Q Consensus 647 ~~~~~ 651 (1082)
+.++.
T Consensus 403 ~~t~~ 407 (414)
T PF02897_consen 403 LATGE 407 (414)
T ss_dssp TTTTC
T ss_pred CCCCC
Confidence 77763
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.056 Score=53.88 Aligned_cols=236 Identities=15% Similarity=0.112 Sum_probs=139.9
Q ss_pred ccEEEeecCCCe-EEEee-CCe-EEEEecCCCeeEEEECCCCCC--eeEEEEecCCCcEEEEEeCC-----CcEEEEecc
Q 001415 789 VPCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVR 858 (1082)
Q Consensus 789 i~~l~~s~dg~~-l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~ 858 (1082)
-..++|+|--.. ++.+- -|+ ..++|....+...++....+. .-.=.||| ||.+|...-.| |.|-|||..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 345777776553 44444 254 788999888777766544332 23347999 88888765433 689999988
Q ss_pred cc-eeeeeecccccCEEEEEEeCCCCEEEEEeCC------------------CcEEEEEcCCcccccceeeeccCCCCCC
Q 001415 859 VD-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPT 919 (1082)
Q Consensus 859 ~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 919 (1082)
.+ +.+.++..|.-.-..+.+.+||+.|+.+... -.+.+-|..+++......+.....+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--- 225 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--- 225 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence 64 5677888888777889999999999887431 1233334333333322222211111
Q ss_pred CCCCcEEEEcCCCcEEEEEe-cC-----eEEEEEccCcceeeeeccCC-----CCcceeEEEEcCCCceEEEee-cCCcE
Q 001415 920 AQSDTRVQFHQDQIHFLVVH-ET-----QLAIFETTKLECVKQWVPRE-----SSAPITHATFSCDSQLVYACF-LDATV 987 (1082)
Q Consensus 920 ~~~v~~~~fspdg~~l~~~~-d~-----~i~iwd~~~~~~~~~~~~~~-----h~~~i~~l~~s~dg~~l~t~s-~dg~v 987 (1082)
.++..++.-+||+.++.+. .| --.+=....++.+.-+.... -..-|-+|+...+..+++..+ ..+..
T Consensus 226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 4578888888988877641 11 11122223344333332211 133567788877666666655 45567
Q ss_pred EEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEc
Q 001415 988 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1044 (1082)
Q Consensus 988 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~ 1044 (1082)
.+||..+|.++.... ++.. . .+.- +..-+++.+.+|.+.++.
T Consensus 305 vi~da~tG~vv~~a~----l~da------a--Gva~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAA----LPDA------A--GVAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEeccc----cccc------c--ccee---ccCceEEecCCceEEecc
Confidence 899999999885443 2222 1 1221 133466667788888773
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.45 E-value=0.0068 Score=70.63 Aligned_cols=189 Identities=12% Similarity=0.060 Sum_probs=105.2
Q ss_pred CCccEEEeecCCCeEEEee-------CC--eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCC--------
Q 001415 787 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 849 (1082)
Q Consensus 787 ~~i~~l~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-------- 849 (1082)
..+.+.++||||+.++... +. .|.+++... .. ..+.. ....+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999887664 32 466666532 22 33322 22488899999 76666655422
Q ss_pred ----CcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEE---EEcCCcccccceeeeccCCCCCCCCC
Q 001415 850 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 922 (1082)
Q Consensus 850 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1082)
+.+++.++..++... ...+.|..+.|||||..++... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 334444554443322 2356799999999999988876 477776 333333311111111111111 23
Q ss_pred CcEEEEcCCCcEEEEEecCeEEEEEccC-cceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEE
Q 001415 923 DTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 988 (1082)
Q Consensus 923 v~~~~fspdg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~ 988 (1082)
+..+.|.+++.+++...++.-.+|.+.- |.....+.......++.+|+-+++ .|+.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999976554444444454332 222222222223566777777763 355555566433
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.052 Score=57.60 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=134.8
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCe
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 443 (1082)
..|.|++..|+.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++. ..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~--~g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACE--HG 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEc--cc
Confidence 34778888778888888999999998775432 1 1223445555545555555553 23
Q ss_pred EEEEEccCCceeeEEEEee-cc-ccCeeEEEecCCCCceEEEEEeC------C---CcEEEEEcc-CCceeEEeecCCcC
Q 001415 444 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP 511 (1082)
Q Consensus 444 v~iwd~~~~~~~~~~~~~~-~h-~~~V~~l~fs~dg~~~~l~s~s~------d---~~i~vwd~~-~~~~~~~~~~h~~~ 511 (1082)
+.+++.+++.......... +. ....+.+...|+|. +.++... . ..-.||-+. .+..++.+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6777776665433222221 22 23566888899998 3333222 0 112455555 57777777766666
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEE
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
-+.++|+|++. .+.++=+..+.|.-|+++..... .... .. ........+..-.++.+.+|.+.++
T Consensus 165 ~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~---------~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 165 PNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGP----IGGR-RG---------FVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred cCceEECCCCC-EEEEEeCCCCeEEEEecCcccCc----cCCc-ce---------EEEccCCCCCCCceEEeCCCCEEEe
Confidence 78889987664 34444455577888877631000 0000 00 1111112223344677777777755
Q ss_pred EeCCC-eEEEEECCCcceEEEEecCCCCCCcCeEEEc-CCCCEEEEEEC
Q 001415 592 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 638 (1082)
Q Consensus 592 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~ 638 (1082)
+..+| .|.+|+.. |+++..+..... .+++++|- ++.+.|++.+.
T Consensus 230 a~~~g~~v~~~~pd-G~l~~~i~lP~~--~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPD-GKLLGEIKLPVK--RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCC-CcEEEEEECCCC--CCccceEeCCCcCEEEEEec
Confidence 44444 89999988 999998887643 57778885 45566665544
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.024 Score=66.16 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=87.8
Q ss_pred CCeeEEEEecCCCcEEEEEe------CCC--cEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCc-EEEE-
Q 001415 828 PAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVW- 897 (1082)
Q Consensus 828 ~~v~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~vw- 897 (1082)
..+.+.+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++...... +++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 676666554 244 4555554 23222222332 3788899999998887753312 2222
Q ss_pred ----------EcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEE---EEccCcceee----eeccC
Q 001415 898 ----------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVK----QWVPR 960 (1082)
Q Consensus 898 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~i---wd~~~~~~~~----~~~~~ 960 (1082)
+++.++... .....|..+.|||||+.++...+++|.+ -....|.... .+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~- 493 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP- 493 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence 333322110 0114689999999999999976788877 4444454111 1111
Q ss_pred CCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415 961 ESSAPITHATFSCDSQLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 961 ~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~ 993 (1082)
+-...+.++.|..++.++ ++..++...+|.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 113346889999999955 55555555566543
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.051 Score=57.62 Aligned_cols=220 Identities=13% Similarity=0.084 Sum_probs=124.9
Q ss_pred EEeecCCCeEEEee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec--
Q 001415 792 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-- 867 (1082)
Q Consensus 792 l~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 867 (1082)
..|.++...|.... .+.|.-|+..+++.. .+..+ ..+.++..-..++ .|+++ +..+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEeccc
Confidence 34667777665554 688999998865433 23222 2334444333144 44433 2346777776555422221
Q ss_pred --c-cccCEEEEEEeCCCCEEEEEeC-----C----CcEEEEEcCC-cccccceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415 868 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 868 --~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 934 (1082)
+ -...-+.+...|+|.+.++... . ..-.+|.+.. +.. ......+. ..-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCE
Confidence 1 1244567788899987776544 1 1124666553 221 11121111 23368999999988
Q ss_pred EEEE--ecCeEEEEEccC--cce---eeeeccCCCCcceeEEEEcCCCceEEEeecCC-cEEEEecCCceeeeeeCCCee
Q 001415 935 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1006 (1082)
Q Consensus 935 l~~~--~d~~i~iwd~~~--~~~---~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg-~v~vwd~~~~~~~~~~~~~~~ 1006 (1082)
|..+ ..+.|.-|++.. +.. ........+.+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---- 251 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---- 251 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence 7774 447787777652 211 11122223356677788888898876555554 89999999 99998887
Q ss_pred cCCCCCCCCceeeEEEEeCCCCCeEEEEe
Q 001415 1007 LPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus 1007 ~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
+|. ..+.+++|--.+.+.|.+.+
T Consensus 252 lP~------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 252 LPV------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC------CCCccceEeCCCcCEEEEEe
Confidence 332 23446777754555544443
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.2 Score=56.22 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=76.0
Q ss_pred EeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeeccc-c
Q 001415 793 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 870 (1082)
Q Consensus 793 ~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~ 870 (1082)
.++.+....+... ++.+.+.+-...+. +. ..+.+..+++|| +++++|.-..+|.+.+....-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3444554444443 45566444332211 22 346799999999 8999999999999999876655555555433 3
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccC
Q 001415 871 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 950 (1082)
Q Consensus 871 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~ 950 (1082)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|..-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455677777554333332 23344443222 224444444444444333477776555
Q ss_pred cceeeee
Q 001415 951 LECVKQW 957 (1082)
Q Consensus 951 ~~~~~~~ 957 (1082)
-+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 5554443
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.34 Score=54.03 Aligned_cols=256 Identities=14% Similarity=0.140 Sum_probs=152.2
Q ss_pred eeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
+...+.-......+++.|+|..+.++......+.+-+......... ...-...-..+++++
T Consensus 23 ~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~ 83 (381)
T COG3391 23 VTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNP 83 (381)
T ss_pred EEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCC
Confidence 3344443347788899999965555544444444444431111100 001113456789999
Q ss_pred CCCeEEEE-eCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe-CCCcEEEEEccCCceeEEeecC
Q 001415 431 DGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH 508 (1082)
Q Consensus 431 dg~~las~-~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~h 508 (1082)
++..+... ..++.|.+.|..+.+..... ..+. ....++|+++++.++++-.. .++++.+.|..+++.+.+...-
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG 159 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG 159 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence 88855544 45688999998776655422 1222 56789999999864444333 4789999999999988876544
Q ss_pred CcCeEEEeeeecCCceEEE-EecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCC
Q 001415 509 EAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1082)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~ 587 (1082)
..+ ..+++.++ |..++ +-..++.|.+.|........ ......+ +. ...-..+.++++++
T Consensus 160 ~~P-~~~a~~p~--g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~------~~---------~~~P~~i~v~~~g~ 219 (381)
T COG3391 160 NTP-TGVAVDPD--GNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLV------GV---------GTGPAGIAVDPDGN 219 (381)
T ss_pred CCc-ceEEECCC--CCeEEEEecCCCeEEEEeCCCcceec--ccccccc------cc---------CCCCceEEECCCCC
Confidence 444 66666554 45444 44578899999865432221 0000000 00 00222345555555
Q ss_pred EEEEEeC---CCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcEEEEEecCC
Q 001415 588 RFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG 650 (1082)
Q Consensus 588 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-g~i~iwd~~~~ 650 (1082)
++.+... ++.+...|..++........-... ....+.++|+|..+.+.... +.+.+.|..+.
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 5544332 368999999888777652222222 34678999999999888544 77888887765
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.29 E-value=0.12 Score=58.87 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=124.2
Q ss_pred ccEEEeecCCCeEEEee--CC----eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-----------c
Q 001415 789 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----------S 851 (1082)
Q Consensus 789 i~~l~~s~dg~~l~~~s--dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-----------~ 851 (1082)
+..+++||||+++|.+- +| .++++|+.+++.+...-. ......+.|.+ +++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 34678999999999773 23 499999999977653211 11123499999 655544443222 3
Q ss_pred EEEEecccceee--eeeccccc--CEEEEEEeCCCCEEEEEeCC----CcEEEEEcCCc--ccccceeeeccCCCCCCCC
Q 001415 852 IQIYNVRVDEVK--SKLKGHSK--RITGLAFSHALNVLVSSGAD----SQLCVWSSDGW--EKQKNRFLQIPTGRTPTAQ 921 (1082)
Q Consensus 852 v~iwd~~~~~~~--~~l~~h~~--~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~ 921 (1082)
|+.|.+.+...- ..+..... ....+..++|+++|+..... ..+.+-++..+ .......+.... .
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------~ 277 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------D 277 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------S
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------C
Confidence 788888765322 33333332 26678899999997754332 23666677663 111122222211 1
Q ss_pred CCcEEEEcCCCcEEEEEe----cCeEEEEEccCcce---eeeeccCCCCc--ceeEEEEcCCCceE-EEeecCC--cEEE
Q 001415 922 SDTRVQFHQDQIHFLVVH----ETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVCV 989 (1082)
Q Consensus 922 ~v~~~~fspdg~~l~~~~----d~~i~iwd~~~~~~---~~~~~~~~h~~--~i~~l~~s~dg~~l-~t~s~dg--~v~v 989 (1082)
.+....-+..+.+++.+. .+.|.-.++..... ...+. .|.. .+..+.. .+.+| +....++ .|++
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEEE
Confidence 222323233444444433 35677777776653 21233 3333 4555544 34444 4444554 4888
Q ss_pred EecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC---CcEEEEccCCCC
Q 001415 990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1049 (1082)
Q Consensus 990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d---g~v~vW~~~~~~ 1049 (1082)
+++..+.....+. ++.. ..+. .+...+....+.++.++- ++++.||+.+++
T Consensus 354 ~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 354 YDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9999444444443 2221 1122 344444333444443332 578899999988
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.28 E-value=0.1 Score=55.61 Aligned_cols=232 Identities=11% Similarity=0.136 Sum_probs=131.1
Q ss_pred cCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCe
Q 001415 729 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 808 (1082)
Q Consensus 729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~ 808 (1082)
..++.|+.|+.+| +.+++.... .....+ .+...|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-------------------~~~~~i-------~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-------------------SKPTRI-------LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-------------------ccceeE-------eecceEEEEEEecccCEEEEEcCCc
Confidence 3567788888888 777765110 000000 0334488999999989998889999
Q ss_pred EEEEecCCCeeEEEE--------------CCCCCCeeEEE--EecCCCcEEEEEeCCCcEEEEecccc-----eeeeeec
Q 001415 809 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 867 (1082)
Q Consensus 809 i~iwd~~~~~~~~~~--------------~~~~~~v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~-----~~~~~l~ 867 (1082)
+.++++......... ......+...+ -...+...|+++. ...|.+|..... +...++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998865444311 11122344444 1122445555554 458988887653 3445554
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC-----CCCCCCcEEEEcCCCcEEEEEecCe
Q 001415 868 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQDQIHFLVVHETQ 942 (1082)
Q Consensus 868 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~fspdg~~l~~~~d~~ 942 (1082)
-...+.+++|. ++.++.|..++ ..+.|+.++.... +........ ........+.--+++.+|++. +..
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~ 209 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNI 209 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE--EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cce
Confidence 34778899998 66777777655 7889998754322 111111000 000111222223345665543 332
Q ss_pred EEEEEccCcceee--eeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 943 LAIFETTKLECVK--QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 943 i~iwd~~~~~~~~--~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
-.+.|. .|+..+ .+.- ...+.++++ ...||+..+. +.|.||++.++++++.+.
T Consensus 210 g~fv~~-~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 222333 443332 1111 235556666 3457776654 569999999999998877
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.038 Score=55.04 Aligned_cols=230 Identities=17% Similarity=0.213 Sum_probs=124.8
Q ss_pred EEEEECCCcceEEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----CcEEEEEecCCccceeecccccccccccccccC
Q 001415 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1082)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1082)
..++|..+.+...++....+....-.-.|||||.+|+..-+| |.|-|||...+.+.+..+..+...
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG--------- 163 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG--------- 163 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC---------
Confidence 457787777766665443332222335699999999876443 779999998776666666554332
Q ss_pred CCCccccCCCCceeeeccC-------CceeEEEecccCC---------CCccccccccCcccccceeEEEEccCCceeee
Q 001415 673 NGDVRSLADVKPRITEESN-------DKSKVWKLTELSE---------PNQCRSLRLPENLRATKISRLIFTNSGNAILA 736 (1082)
Q Consensus 673 ~~~~~~s~~~~~l~~~~~d-------~~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 736 (1082)
..++...+||+.++.+... +..+ .++..++. ...+....+|...+...|..++..+||..++.
T Consensus 164 pHev~lm~DGrtlvvanGGIethpdfgR~~-lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 164 PHEVTLMADGRTLVVANGGIETHPDFGRTE-LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred cceeEEecCCcEEEEeCCceecccccCccc-cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 2334448899998876431 1111 12222211 12223334444446667888888888875554
Q ss_pred cccCCeEEEeeccccccC-CCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEEEee--CCeEEEEe
Q 001415 737 LASNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFN 813 (1082)
Q Consensus 737 ~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~s--dg~i~iwd 813 (1082)
+--.|.- .+.. .-+.......++..+........ ....|-+++.+.+..+++..+ .+...+||
T Consensus 243 cQy~G~~-------~d~ppLvg~~~~g~~l~~~~~pee~~~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 243 CQYRGPR-------NDLPPLVGHFRKGEPLEFLDLPEEQTAA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred EEeeCCC-------ccCCcceeeccCCCcCcccCCCHHHHHH-------HHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 4332210 0000 00111111122333333222211 345678888887777777666 46799999
Q ss_pred cCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 814 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 814 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
..++..+..-.-. .+..++-.. + =+++.+.+|.+.++.
T Consensus 309 a~tG~vv~~a~l~--daaGva~~~--~-gf~vssg~G~~~~~s 346 (366)
T COG3490 309 AATGAVVSEAALP--DAAGVAAAK--G-GFAVSSGQGRIIFYS 346 (366)
T ss_pred cCCCcEEeccccc--ccccceecc--C-ceEEecCCceEEecc
Confidence 9999887653321 122233322 2 344455677777764
No 375
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.23 E-value=0.00016 Score=79.04 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=129.9
Q ss_pred CCCccEEEeecCCC--eEEEee-CCeEEEEecCCCee--EEEECCCCCCeeEEEEecCCCcEEEEEeC----CCcEEEEe
Q 001415 786 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYN 856 (1082)
Q Consensus 786 ~~~i~~l~~s~dg~--~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd 856 (1082)
...+.|++...+.. ++++|. +|.|.+-......- .....++...+++++|++-|...||.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44566776655443 666665 68888887764322 23445667789999999988888988753 56899999
Q ss_pred cccc--eee--eeecc-cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC-
Q 001415 857 VRVD--EVK--SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ- 930 (1082)
Q Consensus 857 ~~~~--~~~--~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp- 930 (1082)
+.++ .+. ..+.+ -.....+++|-.|.+++.+|.....+.++|+...... ...+.+ ..+..+..+|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhh--------hhcccceecCC
Confidence 9876 221 12222 3344568899989999999999989999998842111 111111 2356677888
Q ss_pred CCcEEEEEecCeEEEEE-ccCcceeeeeccCC---CCcceeEEEEcCCC-ceEEEee-cCCcEEEEecC
Q 001415 931 DQIHFLVVHETQLAIFE-TTKLECVKQWVPRE---SSAPITHATFSCDS-QLVYACF-LDATVCVFSAA 993 (1082)
Q Consensus 931 dg~~l~~~~d~~i~iwd-~~~~~~~~~~~~~~---h~~~i~~l~~s~dg-~~l~t~s-~dg~v~vwd~~ 993 (1082)
.+.+++...|+.+.+|| ..+-+.......+. -...+..++|+|-. ..|++.+ ..++|+++|+.
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 78899998899999999 33332221111111 12348899999954 2455555 45789999874
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0014 Score=72.11 Aligned_cols=94 Identities=18% Similarity=0.434 Sum_probs=72.7
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCcee-EEEEecCCCeEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG 436 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 436 (1082)
.-.|..+.|+|.-. |+|++..+|.|.+..++ .+++ |+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence 45688899999999 79999999999998887 4433 33 333455666 999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 474 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs 474 (1082)
+|-.||+|++-|++++..+... ...-...|.++-|+
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998866531 12234567777776
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.10 E-value=0.029 Score=66.37 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=97.9
Q ss_pred CCcEEEEE-eCCCcEEEEecccceeeeeecccccC-EEEEEEeCCC-------CEEEEEeCCCcEEEEEcCCccccccee
Q 001415 839 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHAL-------NVLVSSGADSQLCVWSSDGWEKQKNRF 909 (1082)
Q Consensus 839 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~-------~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 909 (1082)
+..+|+.. .....|+-.|+..|+.+..++.|... |..++ |+. .-...|-.+..+..||.+-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44454443 35678999999999999999988754 55544 432 234456667779999987532 122
Q ss_pred eeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEE
Q 001415 910 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 989 (1082)
Q Consensus 910 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~v 989 (1082)
+..............+++-+.+|...+.+.+|.|++||- .|..-.+..+ +-..+|.+|+.+.||+||++.+ +..+.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 221111112224567888888888777789999999994 3333333322 4478999999999999988665 667777
Q ss_pred Eec
Q 001415 990 FSA 992 (1082)
Q Consensus 990 wd~ 992 (1082)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.07 E-value=0.2 Score=53.39 Aligned_cols=221 Identities=13% Similarity=0.141 Sum_probs=125.0
Q ss_pred cCCCeEEEeeCCeEEEEecC-CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeee--------
Q 001415 796 KNDSYVMSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-------- 866 (1082)
Q Consensus 796 ~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------- 866 (1082)
..++.|+.|.++.+.+++.. ......... ...|..+...| +-+.|++-+ |+.++++++..-.....-
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 45678888886559999993 333333332 22399999999 555555443 599999998764333210
Q ss_pred ------cccccCEEEEE---EeCCCCEEEEEeCCCcEEEEEcCCcccc---cceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415 867 ------KGHSKRITGLA---FSHALNVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 867 ------~~h~~~V~~l~---~s~d~~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 934 (1082)
......+...+ -.....+|+.+ ...+|.+|........ ..+-+..+ ..+..++|. +..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNK 150 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCE
Confidence 11223344444 11233445544 4558999988773211 11111221 456888888 667
Q ss_pred EEEEecCeEEEEEccCcceeeeeccCCC----------CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeee--eeC
Q 001415 935 FLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RIN 1002 (1082)
Q Consensus 935 l~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~--~~~ 1002 (1082)
++.+..+...+.|+.++.....+..... ..++..+... ++++|++- |..-..-|. .|+... .+.
T Consensus 151 i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 151 ICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence 7777788899999987776554432221 2234444443 46777754 333333343 444332 111
Q ss_pred CCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1003 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1003 ~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
|. ..+..+.+.. .+|+..+. +.|.||++.+++
T Consensus 227 ---W~--------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 ---WS--------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ---cC--------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 10 1344677654 36665554 559999999998
No 379
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.22 Score=54.37 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=117.7
Q ss_pred CcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEE---EecC----CCeEEEEeC---------C-Ce
Q 001415 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPD----GSLFGVAYS---------R-HI 443 (1082)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~---~spd----g~~las~~~---------d-~~ 443 (1082)
+.|++.|..+.+.+.+..+. ....+++++ |..+ ..+|++|+. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 35778888777776654332 122444443 3332 568888753 2 88
Q ss_pred EEEEEccCC----ceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCc-eeEEeec-CCcCeEEEee
Q 001415 444 VQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEG-HEAPVYSVCP 517 (1082)
Q Consensus 444 v~iwd~~~~----~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~-h~~~v~~~~~ 517 (1082)
|.++++... ..+..... ....++|++++-- +|. ++++. .+.|.+|++...+ ....-.. ....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 23332222 2357889998866 333 33333 4789999999888 4433221 2235555554
Q ss_pred eecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCe
Q 001415 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1082)
Q Consensus 518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 597 (1082)
. . ++++.|...+.+.++.++..... ..-++-+.. ...+.++.+-++++.++++..+|.
T Consensus 138 ~--~--~~I~vgD~~~sv~~~~~~~~~~~---------l~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 138 F--K--NYILVGDAMKSVSLLRYDEENNK---------LILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp E--T--TEEEEEESSSSEEEEEEETTTE----------EEEEEEESS----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred c--c--cEEEEEEcccCEEEEEEEccCCE---------EEEEEecCC---------CccEEEEEEecCCcEEEEEcCCCe
Confidence 3 3 48888888888887755542221 111111111 113344444433347888899999
Q ss_pred EEEEECCC-------c--ceEEEEecCCCCCCcCeE---EEcC--CC------CEEEEEECCCcEEEEE
Q 001415 598 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILA 646 (1082)
Q Consensus 598 i~iwd~~~-------~--~~~~~~~~~~~~~~i~~~---~~s~--dg------~~l~~~~~dg~i~iwd 646 (1082)
+.++.... + ++......+-+ ..|+++ ++.| .+ ..++.++.+|.|.+.-
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 99887652 2 22222222222 135555 4444 12 2478888999988543
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.04 E-value=0.26 Score=54.31 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=60.2
Q ss_pred EEEEecCCCeEEEEeCCCeEEE---EEccCCc---e---eeEEEEeeccc-cCeeEEEecCC---C------CceEEEEE
Q 001415 425 RVIWSPDGSLFGVAYSRHIVQI---YSYHGGD---E---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 485 (1082)
Q Consensus 425 ~l~~spdg~~las~~~d~~v~i---wd~~~~~---~---~~~~~~~~~h~-~~V~~l~fs~d---g------~~~~l~s~ 485 (1082)
.++.||++++||.+..+..+.+ |+..... . +.-...+.... ..|+++.+-|= . ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988777666 6442211 1 11111122111 46777666432 1 12289999
Q ss_pred eCCCcEEEEEccCCceeEEeecCCcCeEEEeee
Q 001415 486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1082)
Q Consensus 486 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1082)
..+|.|++|. ++|..+..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999999 6888776666688888888754
No 381
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.02 E-value=0.11 Score=56.77 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=103.3
Q ss_pred CeEEEEecCCCeeEEEECCCCC-CeeEEE---EecC---CCcEEEEEeC----------CCcEEEEecccc----eeeee
Q 001415 807 GKISLFNMMTFKTMATFMPPPP-AATFLA---FHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK 865 (1082)
Q Consensus 807 g~i~iwd~~~~~~~~~~~~~~~-~v~~l~---~sp~---~~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 865 (1082)
..|++.|..+.+.+..+.-... .+++++ +..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888877766543332 344433 3321 1578888764 289999999884 12222
Q ss_pred e--cccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc-cccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe-cC
Q 001415 866 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ET 941 (1082)
Q Consensus 866 l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~ 941 (1082)
+ ....++|++++-- ++. |+.+. .+.|.+|++...+ ......... ..........+.++++++ .+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~---------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDS---------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-B---------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecc---------eEEEEEEeccccEEEEEEccc
Confidence 1 2357889999876 444 44443 4789999999866 322222211 123344444455777753 46
Q ss_pred eEEEEEccC-cceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415 942 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 942 ~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~ 993 (1082)
.+.++..+. ...+..+..+.....++++.|-+|++.++.+..+|.+.++...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 677665443 2223333322335678999998777789999999999999886
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.99 E-value=0.24 Score=54.63 Aligned_cols=83 Identities=7% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCCCccEEEeecCCCeEEEeeC-CeEEEEecCCCeeEEEECCCCCCeeE-EEEecCC----------------Cc-EEEE
Q 001415 785 PEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATF-LAFHPQD----------------NN-IIAI 845 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~~----------------~~-~las 845 (1082)
....+.+++.+|++++.|+..+ |.|.++|+.++..++..++-.+.-.. +...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999988888754 99999999998888777665433111 1111001 11 3344
Q ss_pred EeCCCcEEEEecccceeeeeec
Q 001415 846 GMDDSSIQIYNVRVDEVKSKLK 867 (1082)
Q Consensus 846 g~~dg~v~iwd~~~~~~~~~l~ 867 (1082)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5568899999999887665554
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.013 Score=63.33 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=93.5
Q ss_pred ceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEE-----EEecCCCcEEEEecCCCCce-eeecCC
Q 001415 479 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSR-VDYEAP 552 (1082)
Q Consensus 479 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~-~~~~~~ 552 (1082)
.+++.++.....++--|++.|+.+..+.-|.. |.-+.+.++..+..+ +.|-.|..|.-||.+-.... +...
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-- 422 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-- 422 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee--
Confidence 34677777778899999999999999987766 666666665544433 34556888999998743321 1000
Q ss_pred CCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce-EEEEecCCCCCCcCeEEEcCCCC
Q 001415 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGC 631 (1082)
Q Consensus 553 ~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~dg~ 631 (1082)
.+-.|+ +.....|.+-..+ .++++|+.+|.||+||- .+.. ...+.+-+. +|..+..+.||+
T Consensus 423 ----q~kqy~----------~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~--~I~hVdvtadGK 484 (644)
T KOG2395|consen 423 ----QSKQYS----------TKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGD--AIKHVDVTADGK 484 (644)
T ss_pred ----eccccc----------cccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCC--ceeeEEeeccCc
Confidence 000010 0112233333333 37999999999999997 4433 333444443 799999999999
Q ss_pred EEEEEECCCcEEEEEe
Q 001415 632 LLAVSTNDNGIKILAT 647 (1082)
Q Consensus 632 ~l~~~~~dg~i~iwd~ 647 (1082)
+|+..+. ..+.+.++
T Consensus 485 wil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 485 WILATCK-TYLLLIDT 499 (644)
T ss_pred EEEEecc-cEEEEEEE
Confidence 9887664 55555554
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.028 Score=66.09 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=71.0
Q ss_pred EEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCC
Q 001415 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 452 (1082)
Q Consensus 373 llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~ 452 (1082)
.++.|+..|.|...|+.+.-.... | -..-.++|++++|+.||+.++.|-.+|.|.+||+.++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 488899899999888865311000 0 1233579999999999999999999999999999999
Q ss_pred ceeeEEEEeeccccC---eeEEEecCCCCceEEEEEeCCCcEEEEEcc
Q 001415 453 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1082)
Q Consensus 453 ~~~~~~~~~~~h~~~---V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~ 497 (1082)
+.++ .+..|..+ |..+.+..++. .++++..-|. +|...
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEEE
Confidence 8776 34444444 44444555555 5777776665 66543
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0038 Score=68.76 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=75.2
Q ss_pred CCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEE-EEEEeCCCCEEEEEeCCCcEEEEEcCCccccc
Q 001415 828 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 906 (1082)
Q Consensus 828 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~ 906 (1082)
..+..+.|+| .-.++|.+..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999988 777888887777777 99999999999999999999999999976544
Q ss_pred ceeeeccCCCCCCCCCCcEEEEc
Q 001415 907 NRFLQIPTGRTPTAQSDTRVQFH 929 (1082)
Q Consensus 907 ~~~~~~~~~~~~~~~~v~~~~fs 929 (1082)
.+..... ..|..+-|+
T Consensus 99 ~~~~s~e-------~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVE-------TDISKGIWD 114 (665)
T ss_pred ccccccc-------cchheeecc
Confidence 3211111 345666665
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.002 Score=43.88 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.4
Q ss_pred ceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001415 860 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898 (1082)
Q Consensus 860 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 898 (1082)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 387
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.86 E-value=0.39 Score=53.10 Aligned_cols=286 Identities=10% Similarity=0.086 Sum_probs=145.8
Q ss_pred CEEEEEeCCCeEEEEECCCcc-----eEEEEecCCCCCCcCeEEEc---C--CCCEEEEEECCCcEEEEEecCCc-----
Q 001415 587 NRFLAAGDDFSIKFWDMDSVQ-----LLTSIDADGGLPASPRIRFN---K--DGCLLAVSTNDNGIKILATSDGI----- 651 (1082)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~s---~--dg~~l~~~~~dg~i~iwd~~~~~----- 651 (1082)
..+++|+..|.++||+..... .+-..+.. .+|..+... + +...||+ -.-..+.+|.+....
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 479999999999999985433 22222221 245555443 2 2334444 455777788763211
Q ss_pred ---cceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEc
Q 001415 652 ---RLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT 728 (1082)
Q Consensus 652 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 728 (1082)
-.+.....|..... +..+..+.......-..+.+-+.||.+.+++-+...-.......-+ ...+.|.
T Consensus 114 g~~~~L~~~yeh~l~~~--a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll--------PgPl~Y~ 183 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRT--AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLL--------PGPLCYC 183 (418)
T ss_pred CcEEEEEEEEEEecccc--eeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCC--------CcCeEEe
Confidence 11122222222111 1111111111222346778889999999998765332222221222 2347888
Q ss_pred cCCceeeecccCCeEEEeeccccccCCCCCcc----------cccCccccCCCCcceeecccCCCCCCCCccEEEeecCC
Q 001415 729 NSGNAILALASNAIHLLWKWQRTERNSSGKAT----------ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 798 (1082)
Q Consensus 729 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 798 (1082)
+....+++++.+..+.-|..+.-....+.... ...-.--|...-|+ .--.|..+.++...
T Consensus 184 ~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE----------~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 184 PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGE----------QALDIQVVRFSSSE 253 (418)
T ss_pred ecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCc----------eeEEEEEEEcCCCC
Confidence 88889999999989988876543222111100 00001112222121 11123333444444
Q ss_pred CeEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEE-E------ecCCCcEEEEEeCCCcEEEEecccceeeeeeccccc
Q 001415 799 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA-F------HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 871 (1082)
Q Consensus 799 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~------sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 871 (1082)
..+++-+...+.+.+. +|......+- +....|++ | .+..+..+++++.++++.||.=. +++...+....
T Consensus 254 ~~IvvLger~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~ 329 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHV 329 (418)
T ss_pred ceEEEEecceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCC
Confidence 4566666667777765 3444433332 22222221 2 12122357889999999998633 33333222223
Q ss_pred CEEEEEE---eCCCCEEEEEeCCCcEEEEEcCC
Q 001415 872 RITGLAF---SHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 872 ~V~~l~~---s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
+| ++.. ..-...|++-+.+|.+.+-=+-+
T Consensus 330 PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 330 PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 33 3333 23345788889999998877766
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.69 E-value=0.33 Score=49.26 Aligned_cols=187 Identities=9% Similarity=0.106 Sum_probs=114.1
Q ss_pred CCccEEEeecCCCeEEEee-C--CeEEEEecCCCeeEEEECCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEeccccee
Q 001415 787 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 862 (1082)
Q Consensus 787 ~~i~~l~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 862 (1082)
.....+.|..+|.++-+.+ - ..|+.+|+.+++......-... ---.++.. +.++....-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3345788878888777665 2 4699999999988766543322 22344554 345666677899999999999988
Q ss_pred eeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecC
Q 001415 863 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 941 (1082)
Q Consensus 863 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~ 941 (1082)
+.++.- .+.=+.++ .|++.|+..+....|.++|.++.+......+. ..+.. ...+..+.|- +|...|=. ...
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~p--v~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRP--VSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEE--CCCcEeEEEE-cCEEEEEeCCCC
Confidence 888763 35567777 57778888777788999998875543322222 11111 1344556665 55544443 456
Q ss_pred eEEEEEccCcceeeeeccC----------CC---CcceeEEEEcCCCceEEEee
Q 001415 942 QLAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 982 (1082)
Q Consensus 942 ~i~iwd~~~~~~~~~~~~~----------~h---~~~i~~l~~s~dg~~l~t~s 982 (1082)
.|...|..+|+.+..+... .+ ..-.+.|++.|....|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7888889999887665321 01 34578999988766554443
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.58 E-value=0.0076 Score=58.14 Aligned_cols=108 Identities=12% Similarity=0.011 Sum_probs=59.5
Q ss_pred EEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCC
Q 001415 885 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESS 963 (1082)
Q Consensus 885 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~ 963 (1082)
|...+.||.|+-+++...+...........+ ....- -+..+++ +.+|.|++|...-........+.+-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---------~~v~~-~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---------QRVVT-ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---------eeecc-cCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 4455678888888876633211111111111 11111 2333444 68899999987622222211111212
Q ss_pred cceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 964 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 964 ~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
.....+.--.++.+..+++.||.|+.|++.-++.+....
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 222333333456688889999999999999998887766
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.56 E-value=0.49 Score=49.96 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=81.0
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEc-CCc
Q 001415 824 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-DGW 902 (1082)
Q Consensus 824 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~-~~~ 902 (1082)
....+.+..+..++ ++++++++.......-||-....-...-+.-..+|.+|.|+||+.+.+.+ ..|.|++=+. ...
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788888898 89999888655455567654321222223346789999999998876654 7888887762 221
Q ss_pred ccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeecc-CCCCcceeEEEEcCCCceEEEe
Q 001415 903 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYAC 981 (1082)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~t~ 981 (1082)
+.-......... ..-.+..++|.+++...+++..|.+. ...+.|+.-..-.. ..-......|.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 219 ETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 110011111111 11346889999999988888777543 34455554333321 1224567888998776666655
Q ss_pred ecCCcEEEE
Q 001415 982 FLDATVCVF 990 (1082)
Q Consensus 982 s~dg~v~vw 990 (1082)
.+|.+--|
T Consensus 294 -~~G~ll~~ 301 (302)
T PF14870_consen 294 -QDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred -CCcEEEEe
Confidence 67876544
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.55 E-value=0.35 Score=50.30 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=90.8
Q ss_pred CCccEEEeecCCCeEEEee--CCe--EEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe-cccce
Q 001415 787 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE 861 (1082)
Q Consensus 787 ~~i~~l~~s~dg~~l~~~s--dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 861 (1082)
..+.+.++|+||+.+|... ++. +.++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999888766 444 5555443 3333322 233788889999 677777777677777774 23332
Q ss_pred ee-eeec--ccccCEEEEEEeCCCCEEEEEe---CCCcEEEEEcCCcccccceee-eccCCCCCCCCCCcEEEEcCCCcE
Q 001415 862 VK-SKLK--GHSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 862 ~~-~~l~--~h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~fspdg~~ 934 (1082)
.. ..+. .-.+.|+++.+||||..+|... .++.|.+=-+..........+ ....-.......+..++|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 21 1121 1112899999999999988765 356777776654332211111 111111111256789999999998
Q ss_pred EEEE
Q 001415 935 FLVV 938 (1082)
Q Consensus 935 l~~~ 938 (1082)
++..
T Consensus 180 ~V~~ 183 (253)
T PF10647_consen 180 VVLG 183 (253)
T ss_pred EEEe
Confidence 8874
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.48 E-value=1.3 Score=48.30 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=35.3
Q ss_pred CCEEEEEeCCCeEEEEECCCcceE-EEEecCCCCC-CcCeEEEcCCCCEEEEEECCCcEE
Q 001415 586 KNRFLAAGDDFSIKFWDMDSVQLL-TSIDADGGLP-ASPRIRFNKDGCLLAVSTNDNGIK 643 (1082)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~dg~i~ 643 (1082)
+.+|++.-..+.|....+.++..+ .....-.... .+..+++.|||.+.++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 445555555677877777644332 2222112222 578999999999888888788764
No 393
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.24 Score=58.34 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=104.5
Q ss_pred CCcEEEEEeCC------CcEEEEecccce--eeeeecccccCEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccc
Q 001415 839 DNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 905 (1082)
Q Consensus 839 ~~~~lasg~~d------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~ 905 (1082)
++.++++|+.+ ..+..||..++. .+..+....... +++ .-+|+..+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66788888754 347788877653 222222111112 222 33688888888764 4788998875432
Q ss_pred cceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ec-----------------------CeEEEEEccCcceeeeeccCC
Q 001415 906 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------------------TQLAIFETTKLECVKQWVPRE 961 (1082)
Q Consensus 906 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~~ 961 (1082)
....+.... .....+ .-+|+..++| .+ ..+..||..+.+....-..
T Consensus 381 ~~~~mp~~r------~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-- 450 (557)
T PHA02713 381 MLPDMPIAL------SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-- 450 (557)
T ss_pred ECCCCCccc------ccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC--
Confidence 211111111 111222 2366666664 22 2477788776654322211
Q ss_pred CCcceeEEEEcCCCceEEEeecC------CcEEEEecCC-ceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEE
Q 001415 962 SSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1034 (1082)
Q Consensus 962 h~~~i~~l~~s~dg~~l~t~s~d------g~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~ 1034 (1082)
.......-+..-+|+..+.|+.+ ..|..||..+ .+-. .+.. .|.. .....++-. ++.+.++|
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~~---m~~~-----r~~~~~~~~--~~~iyv~G 519 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LITT---TESR-----LSALHTILH--DNTIMMLH 519 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Eccc---cCcc-----cccceeEEE--CCEEEEEe
Confidence 11111212223367777777654 2467888887 3322 1111 1111 111122222 57899999
Q ss_pred ecCC--cEEEEccCCCCCccccCCCCCCCC
Q 001415 1035 LSDG--GVHVFEPLESEGKWGVPPPVDNGS 1062 (1082)
Q Consensus 1035 ~~dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1062 (1082)
|.|| .+-.+|+.+.+ |..-.|-...+
T Consensus 520 g~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 520 CYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred eecceeehhhcCccccc--ccchhhhcCCc
Confidence 9998 78888888866 77666655444
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.47 E-value=3.3 Score=50.21 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=115.0
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeEEEEeecccc-----CeeEEEec----------------CCCCceEEEEEeCCCc
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-----GVNDIAFS----------------HPNKQLCVITCGDDKT 490 (1082)
Q Consensus 432 g~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~l~fs----------------~dg~~~~l~s~s~d~~ 490 (1082)
+..|..++.++.|.-.|..+|+.+-+...-..... ....+++- ..+. .++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCCe
Confidence 55666677777888888888876653211000000 01112221 1233 4777888999
Q ss_pred EEEEEccCCceeEEeecCCcCeE-------------EEeeeecCCceEEEEecC----------CCcEEEEecCCCCcee
Q 001415 491 IKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSRV 547 (1082)
Q Consensus 491 i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~ 547 (1082)
+.-.|.++|+.+..+.. .+.|. .+.-.|--.+..++.|+. +|.|+-+|.++++...
T Consensus 272 LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999999999877642 22210 000001001135566642 6889999999999887
Q ss_pred eecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEE------------------eCCCeEEEEECCCcceE
Q 001415 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQLL 609 (1082)
Q Consensus 548 ~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~ 609 (1082)
.+.......... .+.+. .+.......-...+++++...++.+ ...+.|.-.|.+||+..
T Consensus 351 ~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 351 AWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 765321111100 01111 1111111122233444443333321 12456777899999988
Q ss_pred EEEecCCCC-------CCcCeEEEcC-CCC---EEEEEECCCcEEEEEecCCccc
Q 001415 610 TSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGIRL 653 (1082)
Q Consensus 610 ~~~~~~~~~-------~~i~~~~~s~-dg~---~l~~~~~dg~i~iwd~~~~~~~ 653 (1082)
..++...+. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 877652221 0111122322 563 7889999999999999999543
No 395
>PRK10115 protease 2; Provisional
Probab=96.45 E-value=1.8 Score=52.31 Aligned_cols=196 Identities=10% Similarity=0.041 Sum_probs=100.7
Q ss_pred CCccEEEeecCCCeEEEeeC--C----eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEE-eCC-----CcEEE
Q 001415 787 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDD-----SSIQI 854 (1082)
Q Consensus 787 ~~i~~l~~s~dg~~l~~~sd--g----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-~~d-----g~v~i 854 (1082)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...... .-..++|++ |++.|+.. ..+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998853 3 3889999887643222111 125699999 55544443 322 36788
Q ss_pred Eecccc--eeeeeecccccCEE-EEEEeCCCCEEEEEeC---CCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001415 855 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 928 (1082)
Q Consensus 855 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 928 (1082)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+|+...........+....+ ....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence 888877 33333433333333 3344558887665443 3568888853311111111221111 112222
Q ss_pred cCCCcEEEEEec--C--eEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecC
Q 001415 929 HQDQIHFLVVHE--T--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 929 spdg~~l~~~~d--~--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~ 993 (1082)
+..+.+++.+.. . .|...++........+........|..+.++ .+.++++...+|.-+++-+.
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333322 2 3433344421122233322123468888887 33566666677776555443
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.047 Score=59.17 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=97.8
Q ss_pred EEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCE-------EEEEeCCCcEEEEEcCCcccccceeeeccC
Q 001415 842 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV-------LVSSGADSQLCVWSSDGWEKQKNRFLQIPT 914 (1082)
Q Consensus 842 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~-------l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 914 (1082)
+|..+.....++-.|+..|+.+.+++-|.. |+-+.+.|+.+. -+.|=.|..|.-||.+-.... .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 444555667899999999999999998876 888888887642 123445777899998743221 222222
Q ss_pred CCCC-CCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415 915 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 992 (1082)
Q Consensus 915 ~~~~-~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~ 992 (1082)
++.- ....-.|.+-..+|..++.+.+|.|++||- .+....+..+ +-..+|..|..+.||++|+..+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2221 113345666666777666689999999997 5544444332 5578999999999999988665 666666654
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.42 E-value=0.14 Score=44.06 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=64.9
Q ss_pred ceEEEEe---cCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415 361 PMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 361 v~~~~~s---pdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1082)
|++|++. .||+.-|++|+.|..|+||+=+ +.+.+ -..++.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 5566554 4666669999999999999854 33321 123457888887766 56889
Q ss_pred EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEec---CCCCceEEEEEeCCCcEE
Q 001415 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIK 492 (1082)
Q Consensus 438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs---~dg~~~~l~s~s~d~~i~ 492 (1082)
+..+|+|-+|+-... +- ..+.. ..+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiKSK-~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIKSK-NQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eeccC-CCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976431 22 22222 235555543 33433 578887777663
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.40 E-value=1.2 Score=48.63 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=118.8
Q ss_pred ccEEEeecCCCeEEEeeCCeEEEEecCCCee---EEEEC----CCCCCeeEEEEecC---CCcEEEEEeCC--------C
Q 001415 789 VPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATFM----PPPPAATFLAFHPQ---DNNIIAIGMDD--------S 850 (1082)
Q Consensus 789 i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~~lasg~~d--------g 850 (1082)
.+.|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5689999999998877789999999 44443 22331 23446789999993 24444444421 2
Q ss_pred cEEEEecccc-------eee-eeecc---cccCEEEEEEeCCCCEEEEEeCCCc-------------EEEEEcCCccccc
Q 001415 851 SIQIYNVRVD-------EVK-SKLKG---HSKRITGLAFSHALNVLVSSGADSQ-------------LCVWSSDGWEKQK 906 (1082)
Q Consensus 851 ~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~-------------i~vwd~~~~~~~~ 906 (1082)
.|.-|....+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. |.-.+.+. ....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 3444444332 111 12222 2233466999999988777765443 21122111 0000
Q ss_pred ceeeeccCCCC-----CCCCCCcEEEEcCC-CcEEEE--EecCeEEEEEccCccee------------------------
Q 001415 907 NRFLQIPTGRT-----PTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV------------------------ 954 (1082)
Q Consensus 907 ~~~~~~~~~~~-----~~~~~v~~~~fspd-g~~l~~--~~d~~i~iwd~~~~~~~------------------------ 954 (1082)
........+.. ........++|.|. |.+.++ +.+..=.|..+..|.-.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 00000000000 00022367899999 887776 33433233323222210
Q ss_pred ---eeeccCCCCcceeEEEEcC-------CCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEe
Q 001415 955 ---KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1024 (1082)
Q Consensus 955 ---~~~~~~~h~~~i~~l~~s~-------dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~ 1024 (1082)
..+.. .+...++.+.|-. .|.++++.-..+.|....+..+..+.... .+. . ....+++.+.+.
T Consensus 242 ~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~v~~~ 314 (331)
T PF07995_consen 242 FVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRDVAQG 314 (331)
T ss_dssp S---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEEEEEE
T ss_pred cCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceEEEEc
Confidence 00001 1235566677654 44566665556677777776443332211 111 1 122356789999
Q ss_pred CCCCCeEEEEecCCcEE
Q 001415 1025 PQEPNEFALGLSDGGVH 1041 (1082)
Q Consensus 1025 ~~d~~~l~s~~~dg~v~ 1041 (1082)
| ||.+.++.+.+|.|.
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 9 689888888888874
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.28 E-value=0.51 Score=52.55 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=92.9
Q ss_pred CCeeEEEEecCCCcEEEEEe--CCCcEEEEecccceeeeeecccccCEEEEEEeCC----CCEEEEEeCCCcEEEEEcCC
Q 001415 828 PAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 828 ~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|+|- -..|...-....|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3577888885 444554432 233333322 2233444 34889999985 33455566778899999874
Q ss_pred cccccceee--eccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceE
Q 001415 902 WEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 978 (1082)
Q Consensus 902 ~~~~~~~~~--~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l 978 (1082)
......+.+ +.-+...+...-...+.|+|....|++- ....-.++++......-.... ...+.|.|.||.+||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 322222222 2211111111223578899999999883 333334455544333333333 236789999999999988
Q ss_pred EEeecC-CcEEEEecCCcee
Q 001415 979 YACFLD-ATVCVFSAANLKL 997 (1082)
Q Consensus 979 ~t~s~d-g~v~vwd~~~~~~ 997 (1082)
+++-.. =.-+|||-....+
T Consensus 171 VVAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEEeCCeEEEEEecCchhhh
Confidence 766432 2468998766543
No 400
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.27 E-value=0.011 Score=40.06 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.0
Q ss_pred eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEe
Q 001415 818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 856 (1082)
Q Consensus 818 ~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 856 (1082)
++...+..|...+.++.|.+ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566677888999999999 778999999999999996
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.24 E-value=0.55 Score=55.14 Aligned_cols=235 Identities=9% Similarity=0.070 Sum_probs=129.6
Q ss_pred cCCCeEEEee-C------CeEEEEecCCCeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCC-C-----cEEEEecccce
Q 001415 796 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVDE 861 (1082)
Q Consensus 796 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~d-g-----~v~iwd~~~~~ 861 (1082)
..+.+++.|+ . ..+..+|..++.-.....- ......++++. ++.+.++|+.| | .+..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666665 2 3488899887644332221 22224445555 56888999998 3 67788877654
Q ss_pred e--eeeecccccCEEEEEEeCCCCEEEEEeCCCc-----EEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcE
Q 001415 862 V--KSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 934 (1082)
Q Consensus 862 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 934 (1082)
- +..+.......... .-+|.+.|+||.||. |..||..+.+.......... .-..-...-+|+.
T Consensus 361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence 2 22232222222212 236888999999964 77788877543222111111 0112222346666
Q ss_pred EEE-Eec------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCc-----EEEEecCCceeeeeeC
Q 001415 935 FLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 935 l~~-~~d------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~-----v~vwd~~~~~~~~~~~ 1002 (1082)
.++ +.+ ..+..||..+.+....-....-..... .-.-++...+.|+.|+. |..||..+.+-...-.
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 666 323 357889988776654333211111111 22336788888887763 7778888776553311
Q ss_pred CCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCC-----cEEEEccCCCCCccccCCC
Q 001415 1003 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1057 (1082)
Q Consensus 1003 ~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg-----~v~vW~~~~~~~~~~~~~~ 1057 (1082)
.+.. .....++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 509 ----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 509 ----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred ----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1111 111122222 478899999887 68889888866 665444
No 402
>PRK10115 protease 2; Provisional
Probab=96.20 E-value=4.5 Score=49.02 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=67.2
Q ss_pred CCceEEEEecCCCeEEEEEcCCC----cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCe
Q 001415 359 SSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1082)
Q Consensus 359 ~~v~~~~~spdg~~llasgs~dg----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1082)
-.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCE
Confidence 34667889999997655544444 388889888764321 0111 1145999999998
Q ss_pred EEEEeCC------CeEEEEEccCCce-eeEEEEeeccccCee-EEEecCCCCceEEEEEe-CCCcEEEEEc
Q 001415 435 FGVAYSR------HIVQIYSYHGGDE-VRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCG-DDKTIKVWDA 496 (1082)
Q Consensus 435 las~~~d------~~v~iwd~~~~~~-~~~~~~~~~h~~~V~-~l~fs~dg~~~~l~s~s-~d~~i~vwd~ 496 (1082)
|+....+ ..|..+++.++.. -.. .+........ .+..+.|++.+++.+.+ .++.+.+++.
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8776542 3677888887721 111 2333233333 33345578753322222 3456888885
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.18 E-value=0.82 Score=49.61 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=96.2
Q ss_pred EEEeecCCCeEEEee-----C--CeEEEEecCCCeeEEEECCCCC---CeeEEEEecCCCcEEEEEe-------------
Q 001415 791 CFALSKNDSYVMSAS-----G--GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM------------- 847 (1082)
Q Consensus 791 ~l~~s~dg~~l~~~s-----d--g~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasg~------------- 847 (1082)
.+..-|+|.+++++- + |.+.+.|-++.+.......... .-..+-|.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 345558998888762 1 4599999998888777654322 345677888 666776654
Q ss_pred -------CCCcEEEEecccceeeeeecccc--cCEEEEEEeCC--CCE-EEEEeCCCcEEEEEc-CCcccccceeeeccC
Q 001415 848 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVWSS-DGWEKQKNRFLQIPT 914 (1082)
Q Consensus 848 -------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~i~vwd~-~~~~~~~~~~~~~~~ 914 (1082)
...++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-.++|..|-- +.++-...+++.++.
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 24589999999999998886332 34566777654 333 333334444544433 444444444444433
Q ss_pred CCC-----CC--------CCCCcEEEEcCCCcEEEEE--ecCeEEEEEccCcc---eeeeeccCCC--------------
Q 001415 915 GRT-----PT--------AQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---CVKQWVPRES-------------- 962 (1082)
Q Consensus 915 ~~~-----~~--------~~~v~~~~fspdg~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~h-------------- 962 (1082)
... +. ..-++.|..|.|.++|.++ ..|.++-||+..-. .+.+....+-
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 210 00 1457999999999999995 68999999987532 3332222211
Q ss_pred CcceeEEEEcCCCceEEEee
Q 001415 963 SAPITHATFSCDSQLVYACF 982 (1082)
Q Consensus 963 ~~~i~~l~~s~dg~~l~t~s 982 (1082)
.+....+..|-||+.|+..+
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 22347788999999988765
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.06 E-value=1.1 Score=43.78 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=110.4
Q ss_pred CeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC---CeEEEEeCCCeEEEE
Q 001415 371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVAYSRHIVQIY 447 (1082)
Q Consensus 371 ~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~~~d~~v~iw 447 (1082)
+.|+.+-=..|.|.-||..+.+..+. . +.+. ++..+.+--.| .+.+.++..-.|.=|
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra-~-----------------ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nw 86 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRA-K-----------------IEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNW 86 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEE-E-----------------EecC--cceeEEEEecCCCceEEEeecceEEEEEc
Confidence 33566655667777788876544331 0 1111 13333332222 233444444445557
Q ss_pred Ecc--CCceeeEEEEeec--cccCeeEEEecCCCCceEEEEEeC-C---------CcEEEEEccCCceeEEeecCCcCeE
Q 001415 448 SYH--GGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD-D---------KTIKVWDATNGAKQYIFEGHEAPVY 513 (1082)
Q Consensus 448 d~~--~~~~~~~~~~~~~--h~~~V~~l~fs~dg~~~~l~s~s~-d---------~~i~vwd~~~~~~~~~~~~h~~~v~ 513 (1082)
|.. .-...+...++.. .....+.-..+|+|+ + ..|.. | |.++.|-. +..+..+...-+--+
T Consensus 87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gr--y-y~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsN 161 (310)
T KOG4499|consen 87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGR--Y-YGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISN 161 (310)
T ss_pred ccccceeeeeeeccccCchHHhcccccCccCCCCc--e-eeeeeccccccccccccEEEEecc--CCCceeeehhccCCc
Confidence 733 2222221111211 133556667789999 4 33321 1 23333321 222222222223334
Q ss_pred EEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEE-ccCCCeeeecccccceeEEEecCCCCEEEEE
Q 001415 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1082)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1082)
.++|..+.. .+.++-+.+-.|.-||.+....... ....+..+.- .|.+. ..-..++++.+|+.+++.
T Consensus 162 gl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~--------~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 162 GLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLS---NRKVIFDLRKSQPFES--------LEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred cccccccCc-EEEEEccCceEEeeeecCCCccccc---CcceeEEeccCCCcCC--------CCCCcceEccCCcEEEEE
Confidence 566763332 4555666777888888543222110 0011111111 00000 011124556678888888
Q ss_pred eCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
-..++|...|..+|+.+..+..... .+++++|--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~--qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTP--QITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCC--ceEEEEecC
Confidence 8999999999999999999987754 789999964
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=1.8 Score=44.23 Aligned_cols=181 Identities=11% Similarity=0.137 Sum_probs=106.4
Q ss_pred ccCCCCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEE
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd 495 (1082)
..+-...|+++.|+|+.+.|.+......-.||=...|+.++.. .+.+- .....+.+..+|+ ++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEE
Confidence 3445556999999999999999888888888888888877643 44442 3345678888888 788888889999988
Q ss_pred ccCCceeEEee---------cC-CcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCC
Q 001415 496 ATNGAKQYIFE---------GH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1082)
Q Consensus 496 ~~~~~~~~~~~---------~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 565 (1082)
+..+..+..+. .+ ....-.++|.+.. +.|+.+-+-.-+.++.+......... ..+.+-
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~----------~~~~~~ 224 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSV----------HASLDP 224 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCccccc----------ccccCc
Confidence 87653332211 12 3445667776544 56666666666666655422111110 000000
Q ss_pred CeeeecccccceeEEEecCCCCEE-EEEeCCCeEEEEECCCcceEEEEec
Q 001415 566 TRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDA 614 (1082)
Q Consensus 566 ~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1082)
. ......-..+..+.|++..+.+ +-+.+++.+.-.|.. |..+..+..
T Consensus 225 ~-~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL 272 (316)
T COG3204 225 T-ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSL 272 (316)
T ss_pred c-cccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEe
Confidence 0 0000011245556677655544 445577777777754 444544443
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.02 E-value=0.36 Score=50.21 Aligned_cols=150 Identities=16% Similarity=0.059 Sum_probs=88.3
Q ss_pred CeeEEEEecCCCcEEEEEe-CCCcEEEEecccceeeeee-cccccCEEEEEEeCCCCEEEEEeCCCcEEEEE-cCCcccc
Q 001415 829 AATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEKQ 905 (1082)
Q Consensus 829 ~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd-~~~~~~~ 905 (1082)
.+.+.++++ ++..+|... .++.-.+|-...+.....+ .+ ..++...|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 666555444 3333344433333333332 33 3788889999988877777677677774 2332221
Q ss_pred cceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe----cCeEEEEEcc---Cc--cee-eeeccC-CCCcceeEEEEcCC
Q 001415 906 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVPR-ESSAPITHATFSCD 974 (1082)
Q Consensus 906 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~iwd~~---~~--~~~-~~~~~~-~h~~~i~~l~~s~d 974 (1082)
. ..+...... ..|..+++||||..++... ++.|.+--+. .+ ..+ ...... .....++++.|.++
T Consensus 102 ~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 P-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred e-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1 111111110 1689999999999999843 5677766543 22 011 111110 22468899999999
Q ss_pred CceEEEeecCCc
Q 001415 975 SQLVYACFLDAT 986 (1082)
Q Consensus 975 g~~l~t~s~dg~ 986 (1082)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 998877765443
No 407
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.93 E-value=0.43 Score=41.12 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=47.5
Q ss_pred eeEEEe---cCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEec
Q 001415 468 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540 (1082)
Q Consensus 468 V~~l~f---s~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 540 (1082)
|+++++ ..||.. -|+.|+.|..||+|+ ....+..+. ..+.|++++-... ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeC
Confidence 455554 445555 799999999999996 446677776 4566777764332 47999999999988854
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.90 E-value=2.9 Score=44.24 Aligned_cols=232 Identities=11% Similarity=0.025 Sum_probs=109.2
Q ss_pred CccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEEC---CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEeccccee-e
Q 001415 788 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-K 863 (1082)
Q Consensus 788 ~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~ 863 (1082)
...++.|..+ ..+++|..+. .+-..+.++.-..+. .-++....+.... ++..++ ++..|.|+.=. ..|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEES-STTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 3556777543 4455555443 333333333333322 1223334444444 333333 34455544321 22221 1
Q ss_pred eeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeE
Q 001415 864 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 943 (1082)
Q Consensus 864 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 943 (1082)
.....-.+.+..+..++||++++++..-....-|+--... ........ ...|..+.|+||+.+.+++..+.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--S-----SS-EEEEEE-TTS-EEEEETTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCc-----cceehhceecCCCCEEEEeCCcEE
Confidence 2233445778899999999998888766656677654311 11112111 156899999999998888888888
Q ss_pred EEEE-ccCcceeee--eccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeE
Q 001415 944 AIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1020 (1082)
Q Consensus 944 ~iwd-~~~~~~~~~--~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1020 (1082)
+.=+ ....+.... .........+..++|.++++..|+|+ .|.+ +...+.|+.-.+-......|. ....
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~-------n~~~ 280 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPS-------NLYR 280 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS----------E
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCC-------ceEE
Confidence 8766 222222211 11111234589999999988888765 4543 456677776655442111221 2347
Q ss_pred EEEeCCCCCeEEEEecCCcEEEE
Q 001415 1021 IAAHPQEPNEFALGLSDGGVHVF 1043 (1082)
Q Consensus 1021 ~~~~~~d~~~l~s~~~dg~v~vW 1043 (1082)
+.|.++ +.-.+.+.+|.|.-|
T Consensus 281 i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEET--TEEEEE-STTEEEEE
T ss_pred EEEcCC--CceEEECCCcEEEEe
Confidence 888763 455555678877654
No 409
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.88 E-value=5.9 Score=47.63 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=65.8
Q ss_pred EEeecCCCeEEEeeCCeEEEEecCCCeeEEEEC--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEE--ecccceeeeeec
Q 001415 792 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIY--NVRVDEVKSKLK 867 (1082)
Q Consensus 792 l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw--d~~~~~~~~~l~ 867 (1082)
.++.|-..++.+|-+..+++||+...+.++... .....|+.+.+. +..+++|...-.|..+ +-...+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 456677778888888999999998877665533 234567777774 4567777766566554 43334433 332
Q ss_pred c--cccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415 868 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 868 ~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
. -..-|+++.+- |...+|.++.=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2 22346666654 555677777767666665544
No 410
>PHA02713 hypothetical protein; Provisional
Probab=95.84 E-value=0.48 Score=55.80 Aligned_cols=190 Identities=10% Similarity=0.056 Sum_probs=97.5
Q ss_pred cCCCeEEEee-C------CeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEecccce--
Q 001415 796 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE-- 861 (1082)
Q Consensus 796 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~-- 861 (1082)
-++.+.+.|+ + ..+..||..+..-...-.-........+..- ++++.+.|+.++ .+..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 4667766665 2 2377888876543211111111111112222 678888888764 48889987643
Q ss_pred eeeeecccccCEEEEEEeCCCCEEEEEeCCC-----------------------cEEEEEcCCcccccceeeeccCCCCC
Q 001415 862 VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGRTP 918 (1082)
Q Consensus 862 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~ 918 (1082)
.+..+.........+ .-+|+..+.||.++ .+..||..+.+-.....+.... .
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~- 455 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--I- 455 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--c-
Confidence 333332221212222 23688888887653 4677887775432211111111 1
Q ss_pred CCCCCcEEEEcCCCcEEEEE-ec------CeEEEEEccC-cceeeeeccCCCCcceeEEEEcCCCceEEEeecCC--cEE
Q 001415 919 TAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TVC 988 (1082)
Q Consensus 919 ~~~~v~~~~fspdg~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg--~v~ 988 (1082)
. .+++ .-+|+..+++ .+ ..+..||..+ .+....-...........+.+ +|+..++|+.|| ++.
T Consensus 456 ---~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 456 ---R-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQD 528 (557)
T ss_pred ---c-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence 1 1222 3345555553 22 2467899887 444322222222222333333 788899999888 677
Q ss_pred EEecCCceee
Q 001415 989 VFSAANLKLR 998 (1082)
Q Consensus 989 vwd~~~~~~~ 998 (1082)
.||..+.+-.
T Consensus 529 ~yd~~~~~W~ 538 (557)
T PHA02713 529 TFNVYTYEWN 538 (557)
T ss_pred hcCccccccc
Confidence 7777766544
No 411
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.026 Score=66.37 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=77.2
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 431 dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 510 (1082)
-+..+|.|+..|.|-..|+.+. +++...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999998888764 221111222357999999999999 788899999999999999999999998888
Q ss_pred CeEEEeeee-cCCceEEEEecCCCcEEEEec
Q 001415 511 PVYSVCPHH-KENIQFIFSTALDGKIKAWLY 540 (1082)
Q Consensus 511 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 540 (1082)
+++++-++. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877775443 233345777666665 5644
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.76 Score=46.77 Aligned_cols=172 Identities=6% Similarity=0.040 Sum_probs=111.9
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE-ecCeEE
Q 001415 866 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 944 (1082)
Q Consensus 866 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~ 944 (1082)
+.|-...|.++.|+|+.+.|++......-.||=-..|+..+...+... .....+.+..+|++.++. .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------SDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------CChhHeEEecCCEEEEEehhcceEE
Confidence 445556699999999999999988888777776666666554444433 234678888899988884 677888
Q ss_pred EEEccCcceeeeec-----c--CCC-CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCC-C
Q 001415 945 IFETTKLECVKQWV-----P--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS-N 1015 (1082)
Q Consensus 945 iwd~~~~~~~~~~~-----~--~~h-~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~-~ 1015 (1082)
++.++....+.... . ..+ +...-.++|+|..+.|..+-+-.-+.||.+..+.---... ....+... .
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 88776553322211 1 122 5567889999999999999888888888776433111100 00011011 0
Q ss_pred c---eeeEEEEeCCCCCeEEEEecCCcEEEEccCCC
Q 001415 1016 V---HPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1048 (1082)
Q Consensus 1016 v---~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1048 (1082)
+ -.-++.|.+..+.+|+-+.+++.|.-.|....
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1 12256778766788888888888877765544
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.74 E-value=0.033 Score=39.67 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.5
Q ss_pred CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCc
Q 001415 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453 (1082)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~ 453 (1082)
...|.+++|||...+||.++.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.69 E-value=7.4 Score=47.29 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=41.2
Q ss_pred CeEEEEEccCcceeeeeccCCCC----------------cceeEEEEcCCCceEEE-eecCCcEEEEecCCceeeeeeC
Q 001415 941 TQLAIFETTKLECVKQWVPRESS----------------APITHATFSCDSQLVYA-CFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 941 ~~i~iwd~~~~~~~~~~~~~~h~----------------~~i~~l~~s~dg~~l~t-~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
|.|.-+|+.+|+.+-......+. .+...-...-.|.+++. |+.|+.++-+|.++|+++-+..
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~ 719 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR 719 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee
Confidence 67888888888876554432110 11111122335666666 6799999999999999998877
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.64 E-value=0.033 Score=39.69 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=29.2
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccc
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE 392 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~ 392 (1082)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 45799999999999 7999999999999998 444
No 416
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.58 E-value=7.6 Score=46.75 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=71.1
Q ss_pred EEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEE--EEecCCceeeeeeC
Q 001415 925 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC--VFSAANLKLRCRIN 1002 (1082)
Q Consensus 925 ~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~--vwd~~~~~~~~~~~ 1002 (1082)
-.+..|-..++.++....+++||+-..+.++......-...|+++++ .+..+++|..--.|. .|+-+..+++.-..
T Consensus 938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 34556777788888888999999988887776664333567777777 466777777555554 45555555543222
Q ss_pred CCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1003 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1003 ~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
...|. +.+++.+. |-..+|.++.=|.+.+-.+....
T Consensus 1016 --D~~pR-------~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 --DPVPR-------HVTALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred --CCccc-------eeeEEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 22222 23345444 35678888887888777665544
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.50 E-value=2.7 Score=41.11 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=39.2
Q ss_pred EEEeecCCCeEEEee-CCeEEEEecCCCeeEEEECCCCCCeeEEEEec
Q 001415 791 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 837 (1082)
Q Consensus 791 ~l~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp 837 (1082)
.+++..+|.+.++.- .++|...|..+|+.+..+.-....+++++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 455566788766664 68999999999999999998899999999964
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.28 E-value=1.5 Score=47.61 Aligned_cols=206 Identities=10% Similarity=0.120 Sum_probs=94.9
Q ss_pred CCcEEEEEe-CCCcEEEEecccc----eeeeeecc---cc----cCEEEEEEeCCCCEEEEEe--CC----CcEEEEEcC
Q 001415 839 DNNIIAIGM-DDSSIQIYNVRVD----EVKSKLKG---HS----KRITGLAFSHALNVLVSSG--AD----SQLCVWSSD 900 (1082)
Q Consensus 839 ~~~~lasg~-~dg~v~iwd~~~~----~~~~~l~~---h~----~~V~~l~~s~d~~~l~s~s--~D----g~i~vwd~~ 900 (1082)
+.++|+..+ ..+.|+|.|+.+. ++.+.+.. +. +.-..+---|+|++++|+= .+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345555555 7789999999853 33344432 11 1112223347898888852 22 346777776
Q ss_pred CcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe---------------------cCeEEEEEccCcceeeeecc
Q 001415 901 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---------------------ETQLAIFETTKLECVKQWVP 959 (1082)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---------------------d~~i~iwd~~~~~~~~~~~~ 959 (1082)
+.+... ......+.. ..-..+-+.|....++++. ..++.+||+.+.+.++++..
T Consensus 166 tf~v~g--~We~~~~~~---~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 166 TFEVKG--RWEKDRGPQ---PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp T--EEE--E--SB-TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cccccc--eeccCCCCC---CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 633221 111111111 2336677888888888743 24799999999999999987
Q ss_pred CCCCcceeEEEEcCCC--ceEEEee-cCCcEE-EEecCCcee----eeeeCCCe---e-cCC---CCCCCCceeeEEEEe
Q 001415 960 RESSAPITHATFSCDS--QLVYACF-LDATVC-VFSAANLKL----RCRINPSA---Y-LPA---GVSSSNVHPLVIAAH 1024 (1082)
Q Consensus 960 ~~h~~~i~~l~~s~dg--~~l~t~s-~dg~v~-vwd~~~~~~----~~~~~~~~---~-~~~---gh~~~~v~~~~~~~~ 1024 (1082)
......+..|.|..|- .+=++++ -.++|. +|.-+.++- +..+.... + +|. +.....-.++.+..+
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 5544567788887653 3322222 333443 333344432 11222111 0 000 000001134678888
Q ss_pred CCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1025 PQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1025 ~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
.+|..+.++.-.+|.|+.||++...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cCCCEEEEEcccCCcEEEEecCCCC
Confidence 8777677788889999999999877
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.27 E-value=0.046 Score=52.97 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=68.7
Q ss_pred eEEEeeCCeEEEEecCCCeeEE-EECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccc-cCEEEEE
Q 001415 800 YVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLA 877 (1082)
Q Consensus 800 ~l~~~sdg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~ 877 (1082)
+++.+++|.|.+|+..-..... .+......+-+..-.-+++.+..++..||.||.|++.-++.+.....|. .++..+.
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i 152 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI 152 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE
Confidence 3444458999998876221111 1111222233322222255689999999999999999998888888887 6666777
Q ss_pred EeCCCCEEEEE--eCCCcEEEEEcCC
Q 001415 878 FSHALNVLVSS--GADSQLCVWSSDG 901 (1082)
Q Consensus 878 ~s~d~~~l~s~--s~Dg~i~vwd~~~ 901 (1082)
.+..++.++++ |.|..++.|++..
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhh
Confidence 77777777777 7788888888766
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1.2 Score=42.73 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=97.6
Q ss_pred CCCeEEEee---CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCE
Q 001415 797 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 873 (1082)
Q Consensus 797 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 873 (1082)
+|.++.+.+ ...|++||+.+++.+....-....+..=-...-+..+.+-.-.+|.-.++|..+-+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 455666554 356999999999887765433222211111111233444556789999999999888877652 2334
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc
Q 001415 874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 952 (1082)
Q Consensus 874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~ 952 (1082)
+.++ .|++-|+.++...+++.-|.++....... .....+..- ..+..+.|- ||...|- -....|...|.++|+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 5554 46666777766677777776664332211 111222110 122222222 3333333 233445555666666
Q ss_pred eeeeeccC----------CCCcceeEEEEcCCC-ceEEEe
Q 001415 953 CVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 981 (1082)
Q Consensus 953 ~~~~~~~~----------~h~~~i~~l~~s~dg-~~l~t~ 981 (1082)
.+..+... .|..-.+.+++.|++ ++++||
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65544322 234567889999987 555655
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.75 E-value=1.4 Score=45.01 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=106.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCC--cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415 872 RITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 949 (1082)
Q Consensus 872 ~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~ 949 (1082)
-...+.|..+|.++-|.|.-| .|+.+|+.+++......+.. ... -..++...|.-+..+=.++...+||.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--~~F-----gEGit~~~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--RYF-----GEGITILGDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--T-------EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--ccc-----ceeEEEECCEEEEEEecCCeEEEEccc
Confidence 346788878898999988776 69999999987543332221 111 145666666666666688999999999
Q ss_pred CcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCc-eeeEEEEeCCCC
Q 001415 950 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV-HPLVIAAHPQEP 1028 (1082)
Q Consensus 950 ~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v-~~~~~~~~~~d~ 1028 (1082)
+.+.+.++...+ .=+.++ .||+.|+.+.....+..+|..+.+....+.... + +..+ ..--+-|. +|
T Consensus 119 tl~~~~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~----~--g~pv~~LNELE~i--~G 185 (264)
T PF05096_consen 119 TLKKIGTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD----N--GRPVSNLNELEYI--NG 185 (264)
T ss_dssp TTEEEEEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE----T--TEE---EEEEEEE--TT
T ss_pred cceEEEEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE----C--CEECCCcEeEEEE--cC
Confidence 999999887543 445556 578888888777889999999988888776322 1 1111 11235555 47
Q ss_pred CeEEEEecCCcEEEEccCCCC
Q 001415 1029 NEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1029 ~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
...|=.-....|...|+.+|+
T Consensus 186 ~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-B
T ss_pred EEEEEeCCCCeEEEEeCCCCe
Confidence 788888888889999999998
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.69 E-value=0.05 Score=62.64 Aligned_cols=180 Identities=13% Similarity=0.196 Sum_probs=104.7
Q ss_pred CeEEEEecC--CCeeEEE-----ECCCCCCeeEEEEecC--CCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEE
Q 001415 807 GKISLFNMM--TFKTMAT-----FMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 877 (1082)
Q Consensus 807 g~i~iwd~~--~~~~~~~-----~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 877 (1082)
|.+.+|+++ .|+.... .......+.-+.|.|- ..-++..+..++.|++........ ..+++|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888876 3332222 2222333444555441 456778888899999887665432 45566877766654
Q ss_pred -----------EeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC-------Cc--EEEE
Q 001415 878 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV 937 (1082)
Q Consensus 878 -----------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-------g~--~l~~ 937 (1082)
.||||+.+|.++.||.++.|.+.-.....-+++...+.|.. ..-.|.-|... +. ++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 48999999999999999999876533333344444444432 22223323332 22 2333
Q ss_pred Ee--cCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCce------------EEEeecCCcEEEEecCC
Q 001415 938 VH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL------------VYACFLDATVCVFSAAN 994 (1082)
Q Consensus 938 ~~--d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~------------l~t~s~dg~v~vwd~~~ 994 (1082)
+. ...+++|.....+|...+. ...|..+. -+||+. ++..+.|++|.+|.-..
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 33 3568899888777763332 22344444 334431 34456788888886443
No 423
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.68 E-value=0.74 Score=52.12 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=61.4
Q ss_pred ecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEE
Q 001415 856 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 935 (1082)
Q Consensus 856 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 935 (1082)
|+-.|..... -.|.+.|--+..+..+..|..-+..-.+.++|+.+.+. ..++ .-.+.+.|-|-...+
T Consensus 324 dli~g~~~~~-inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qk--smil----------nfcsymqwvp~sdvi 390 (1636)
T KOG3616|consen 324 DLIGGQNEGF-INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQK--SMIL----------NFCSYMQWVPGSDVI 390 (1636)
T ss_pred ecccCccccc-ccccccccceeccchhhhhhcccccceeEEEEcccchH--HHHH----------HHhhhheeccCcceE
Confidence 4444544333 35899998888888887788777777789999988442 1111 123678899999988
Q ss_pred EEEecCeEEEE-EccCcceeeeecc
Q 001415 936 LVVHETQLAIF-ETTKLECVKQWVP 959 (1082)
Q Consensus 936 ~~~~d~~i~iw-d~~~~~~~~~~~~ 959 (1082)
++-+...++|| +++..+.+..+..
T Consensus 391 vaqn~dnl~iwyn~d~peqvt~~ki 415 (1636)
T KOG3616|consen 391 VAQNGDNLCIWYNIDAPEQVTMFKI 415 (1636)
T ss_pred EecCCCceEEEecCCcchhheeeEe
Confidence 88666778887 4555555555543
No 424
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.58 E-value=6.5 Score=40.61 Aligned_cols=207 Identities=10% Similarity=0.113 Sum_probs=122.3
Q ss_pred CccEEEeecCCCeEEEee-CCeEEEEecC-------CCeeEEEECC-----CCCCeeEEEEecCCCc------------E
Q 001415 788 AVPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMATFMP-----PPPAATFLAFHPQDNN------------I 842 (1082)
Q Consensus 788 ~i~~l~~s~dg~~l~~~s-dg~i~iwd~~-------~~~~~~~~~~-----~~~~v~~l~~sp~~~~------------~ 842 (1082)
....++++|.+.+-++.. .+...+||.. ....+.++.. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 356799999988776665 4889999986 1223334442 234577888875 222 2
Q ss_pred EEEEeCCCcEEEEeccccee-----eeeec-ccccCE-EEEEEeCC--CCEEEEE-eCCCcEEEEEcCCccccc-ceee-
Q 001415 843 IAIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVSS-GADSQLCVWSSDGWEKQK-NRFL- 910 (1082)
Q Consensus 843 lasg~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s~-s~Dg~i~vwd~~~~~~~~-~~~~- 910 (1082)
++.+++||+|.-|...-+.. ...+. +..+.| ..+++... +.+|..+ -..++|.|+|-.-..... ..+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 45678999999998543222 11222 112333 34565533 4555544 367889999754421100 0000
Q ss_pred -eccCCCCCCCCCCcEEEEcCCCcEEEE-E-------------ecCeEEEEEccCcceeeeeccCCCCcceeEEEEcC--
Q 001415 911 -QIPTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC-- 973 (1082)
Q Consensus 911 -~~~~~~~~~~~~v~~~~fspdg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~-- 973 (1082)
.++.+..+ ..|.-- .+++.++ + .-|.|-+||. .|..++.+...+.-...+.|+..|
T Consensus 183 P~iPagyAP-----FnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 183 PALPAGYAP-----FNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCC-----cceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 01111111 111111 2333333 2 1257889987 578888887666667778888865
Q ss_pred ----CCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 974 ----DSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 974 ----dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
.|.+|+---.||+|..||..+|+.+..+.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 46677766689999999999999988877
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.55 E-value=9.7 Score=42.43 Aligned_cols=283 Identities=11% Similarity=0.080 Sum_probs=146.8
Q ss_pred CceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEee-----cCCCeEEEee
Q 001415 731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-----KNDSYVMSAS 805 (1082)
Q Consensus 731 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-----~dg~~l~~~s 805 (1082)
...+++|+..|.++||+.......++.- ++... -..+|..+..- .+...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~l----------------llE~~-----l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDL----------------LLETQ-----LKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccE----------------EEEEe-----cCCcEEEEEeccccCCCCcceEEEec
Confidence 3578999999999999764333222211 11111 23455555432 1334666666
Q ss_pred CCeEEEEecCC--Ce-------eEEEECCCC--CCeeEEEEecC----CCcEEEEEeCCCcEEEEecccceeeeeecccc
Q 001415 806 GGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 870 (1082)
Q Consensus 806 dg~i~iwd~~~--~~-------~~~~~~~~~--~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 870 (1082)
-.++.+|.+.. +. .+..+..|. .....+++-|- +..+|++-+.||.+.+|+-+.-.....+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 67788887731 11 112222222 12233333332 246899999999999999776544444443 2
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccccc----------------ceee---eccCCCCCCCCCCcEEEEcCC
Q 001415 871 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----------------NRFL---QIPTGRTPTAQSDTRVQFHQD 931 (1082)
Q Consensus 871 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~----------------~~~~---~~~~~~~~~~~~v~~~~fspd 931 (1082)
--...++|.+.-..+++++.+..|.-|....-.... .+.. ...-|.. .-.+..+.++..
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~--~l~i~v~~~~~~ 252 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ--ALDIQVVRFSSS 252 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce--eEEEEEEEcCCC
Confidence 222346788888889999988888888764310000 0000 0000000 011223333434
Q ss_pred CcEEEEEecCeEEEEEccCcceeeeeccCCCCcc--eeEEEEcCCCc---eEEEeecCCcEEEEecCCceeeeeeCCCee
Q 001415 932 QIHFLVVHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAY 1006 (1082)
Q Consensus 932 g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~--i~~l~~s~dg~---~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~ 1006 (1082)
-..+++-.++.+.+.+. +|......+.+..... +..+.+..++. .++.+++++++.||.-.+..--+.+.
T Consensus 253 ~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~---- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP---- 327 (418)
T ss_pred CceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC----
Confidence 44455545666666665 4554444433221111 11111112322 47888899999998754433333322
Q ss_pred cCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCC
Q 001415 1007 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1007 ~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1049 (1082)
...+ .+.++..++-...+++-+.+|.+.+-=+.|.-
T Consensus 328 ------~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 ------HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred ------CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 1112 22333333234578888999999887776654
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.50 E-value=10 Score=45.65 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCCCccEEEeecCCCeEEEeeCCeEEEEecCC-CeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee
Q 001415 785 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 863 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 863 (1082)
....|..+.++|+|++++..+...|.|..+.. ...-..+.+....+.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 34578899999999999998877777766642 111122322222233222222 111111
Q ss_pred eeecccccCEEEEEEeCC---CCEEEEEeCCCcEEEEEcCC
Q 001415 864 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 864 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123456777888876 47788888889999999865
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.45 E-value=7 Score=40.40 Aligned_cols=226 Identities=14% Similarity=0.181 Sum_probs=125.7
Q ss_pred ceeEEEEecCCCeEEEEeCCCeEEEEEccCC----ceeeEEEEeec-----cccCeeEEEecCCCCc----------eEE
Q 001415 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------LCV 482 (1082)
Q Consensus 422 ~V~~l~~spdg~~las~~~d~~v~iwd~~~~----~~~~~~~~~~~-----h~~~V~~l~fs~dg~~----------~~l 482 (1082)
.-+.|+|+|.+.+-++....+...+||.... .......++.. -....+.+.|+..... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4578999999988888888889999998611 11111123331 2345777788644331 135
Q ss_pred EEEeCCCcEEEEEccCCce-----eEEee-cCCcCe-EEEeeeecCCceEEEEec-CCCcEEEEecCCCCceeeecCCCC
Q 001415 483 ITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGR 554 (1082)
Q Consensus 483 ~s~s~d~~i~vwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 554 (1082)
+.+++||+|.-|...-+.. ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-...... ..-.+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 7788999999998543322 11222 112333 345555444445555554 468888886542211100 00000
Q ss_pred ceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC------
Q 001415 555 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK------ 628 (1082)
Q Consensus 555 ~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------ 628 (1082)
+-.-.-|.|-+-..+.+ .-.+....-++++..=+.+..-|.|-++|. .|..++.+...+.......++..|
T Consensus 183 P~iPagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00001111111100000 001111222333334455566789999996 578888887666666667788765
Q ss_pred CCCEEEEEECCCcEEEEEecCCc
Q 001415 629 DGCLLAVSTNDNGIKILATSDGI 651 (1082)
Q Consensus 629 dg~~l~~~~~dg~i~iwd~~~~~ 651 (1082)
.|.+|+--..||+|..+|..++.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCc
Confidence 57788887889999999998883
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=94.38 E-value=9.5 Score=41.67 Aligned_cols=156 Identities=10% Similarity=0.047 Sum_probs=89.0
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCcEEE-Eecccceeeee-ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCccc
Q 001415 827 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 904 (1082)
Q Consensus 827 ~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~ 904 (1082)
...+..+.+.| ++.++++|. .|.++. ++ ..++.-.. -..-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899999 777776654 565543 22 11221111 22334678999999999876655 567654323343321
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeecc-CCCCcceeEEEEcCCCceEEEeec
Q 001415 905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 983 (1082)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~dg~~l~t~s~ 983 (1082)
-. ....+.... ...+..+.|.+++..++++.+|.+. ...+.|+.-..... ..-......+.|..+++.+++| .
T Consensus 248 W~--~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 WS--KPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred cc--cccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 11 111111100 1346788999999988888777665 34444544333321 1112357788888777776655 6
Q ss_pred CCcEEEEec
Q 001415 984 DATVCVFSA 992 (1082)
Q Consensus 984 dg~v~vwd~ 992 (1082)
.|.|.-|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788877653
No 429
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.32 E-value=2.5 Score=49.72 Aligned_cols=195 Identities=10% Similarity=0.060 Sum_probs=101.8
Q ss_pred cEEEeecCCCeEEEee-C-C-----eEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEec
Q 001415 790 PCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNV 857 (1082)
Q Consensus 790 ~~l~~s~dg~~l~~~s-d-g-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~ 857 (1082)
.++++. +|.+.++|+ + | .+..||..+.+-.. ...-...-...+...-+|.+.|+|+.|| +|..||.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 344443 446666665 5 2 37888887665322 1111111111222222788999999997 4777887
Q ss_pred ccce--eeeeecccccCEEEEEEeCCCCEEEEEeCCC------cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEc
Q 001415 858 RVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 929 (1082)
Q Consensus 858 ~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 929 (1082)
.+.+ .+..+.......... .-+|+..+.||.|+ ++..||..++.............. ..++ .
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~a-~ 473 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGVA-V 473 (571)
T ss_pred CCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceEE-E
Confidence 7643 222222211222222 23688888888664 467888887654333333332221 1233 3
Q ss_pred CCCcEEEE-EecC-----eEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCC-----cEEEEecCCceee
Q 001415 930 QDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 998 (1082)
Q Consensus 930 pdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg-----~v~vwd~~~~~~~ 998 (1082)
-++...++ +.++ .+..||..+.+....-......+.+.... -+++..++|+.|| +|..||..+.+-.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 34555555 4444 37788887766654422212222222222 2677778888776 4666766655433
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=2.5 Score=48.75 Aligned_cols=147 Identities=14% Similarity=0.226 Sum_probs=88.8
Q ss_pred CCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001415 849 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 928 (1082)
Q Consensus 849 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 928 (1082)
--.|+||+.. |+.+..+.-..+++-.+.|+.+. .|+....||++.||++-....... .-|.......|..+.|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~-----svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN-----SVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc-----ccccccccCceeEEEE
Confidence 3468888865 66665554444578899999665 566677999999999987332211 0111111134555555
Q ss_pred cCCCcEEEEEecCeEEEEEccCc---------------ceeeeec--------------------------cCCC-----
Q 001415 929 HQDQIHFLVVHETQLAIFETTKL---------------ECVKQWV--------------------------PRES----- 962 (1082)
Q Consensus 929 spdg~~l~~~~d~~i~iwd~~~~---------------~~~~~~~--------------------------~~~h----- 962 (1082)
..+|-.+.+.++..+.+-+.... .|...+. ...|
T Consensus 136 f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred ecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 55665544433332222222110 0000000 0001
Q ss_pred CcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeC
Q 001415 963 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1002 (1082)
Q Consensus 963 ~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~ 1002 (1082)
.+.+..+..||+.++|+-=..+|.|.+-+.+..+..+.+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2567788999999999999999999999999988888776
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=94.08 E-value=11 Score=41.20 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=87.9
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415 870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 949 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~ 949 (1082)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. ......... ....+..+.+.++++.++++..|.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4578899999998766555 4554432 211110 001111111 1146789999999998888877776543344
Q ss_pred CcceeeeeccC--CCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCC
Q 001415 950 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027 (1082)
Q Consensus 950 ~~~~~~~~~~~--~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d 1027 (1082)
.|..-.....+ .....+.++.+.+++..++++ .+|.|. ...+.|+.-..+......+ .....+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~-------~~~~~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVP-------SNFYKIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCC-------cceEEEEEeC--
Confidence 44433222211 113457889999988866655 567655 4556666554433111111 1233566665
Q ss_pred CCeEEEEecCCcEEEEcc
Q 001415 1028 PNEFALGLSDGGVHVFEP 1045 (1082)
Q Consensus 1028 ~~~l~s~~~dg~v~vW~~ 1045 (1082)
++.....+..|.|..|+-
T Consensus 313 ~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCceEEECCCceEEEecC
Confidence 234455677899888764
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.05 E-value=6.1 Score=47.52 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=38.1
Q ss_pred CCcEEEEEccccceeeeeceeeeccCC---CCcccccccc-cCCCCceeEEEEecCCCeEEEEeCCCeEEEE
Q 001415 380 VGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447 (1082)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~d~~v~iw 447 (1082)
|+.+.+||-.....+ ..+++.-+... ...+++.-.. ..-.-.|..|.+||+|++||..|..|.+.+.
T Consensus 41 d~~L~vWd~~e~~l~-~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~ 111 (717)
T PF10168_consen 41 DGDLFVWDSSECCLL-TVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLE 111 (717)
T ss_pred CCEEEEEECCCCEEE-EEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 678888887654432 22332222111 1112221111 2334589999999999999999987754443
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.83 E-value=1.4 Score=51.07 Aligned_cols=124 Identities=10% Similarity=0.139 Sum_probs=77.2
Q ss_pred ECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec-ccccCEEEEEEe--CCCCEEEEEeCCCcEEEEEc
Q 001415 823 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSS 899 (1082)
Q Consensus 823 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~vwd~ 899 (1082)
+...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|-...|.+|.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555689999999886443322 356889999996 79999999999999999854
Q ss_pred CCc----ccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEc
Q 001415 900 DGW----EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 948 (1082)
Q Consensus 900 ~~~----~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~ 948 (1082)
... .......+........+...|.+..|.++|..++. .++++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECC
Confidence 211 00111111111111112256889999999986554 4677888874
No 434
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.81 E-value=1 Score=48.15 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=99.4
Q ss_pred CCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEE-EE-CCCCC----Cee-EEEEecCCCcEEEEEeCCCcEEEE-e
Q 001415 785 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 856 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~-~~-~~~~~----~v~-~l~~sp~~~~~lasg~~dg~v~iw-d 856 (1082)
....+..+-..|||+.+..-+..++.++++.+..... .+ ....+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4566788889999999988888889999887543221 11 11112 133 223233 67777889999999887 4
Q ss_pred cccc-e----eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCC
Q 001415 857 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 931 (1082)
Q Consensus 857 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 931 (1082)
+..+ . .++.++-...+|..+.--.+.+-+++-+..|++.++.-...+.. ..+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 1 22222222344444443344566888888999888765542211 111111 34578999999
Q ss_pred CcEEEEEecCeEEEEEccCcce
Q 001415 932 QIHFLVVHETQLAIFETTKLEC 953 (1082)
Q Consensus 932 g~~l~~~~d~~i~iwd~~~~~~ 953 (1082)
+.++++-..+.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998765443
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=93.81 E-value=3.3 Score=47.92 Aligned_cols=183 Identities=11% Similarity=-0.008 Sum_probs=90.3
Q ss_pred cCCCeEEEee-C-----CeEEEEecCCCeeEEE--ECCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEecccce--ee
Q 001415 796 KNDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDE--VK 863 (1082)
Q Consensus 796 ~dg~~l~~~s-d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~--~~ 863 (1082)
.++.++++|+ + ..+..||..+.+-... +........ ++ .- ++.+.++|+.++ .+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 2 2477788876543322 211111122 22 23 678888888643 57888876542 33
Q ss_pred eeecccccCEEEEEEeCCCCEEEEEeCCC---cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEec
Q 001415 864 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 940 (1082)
Q Consensus 864 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 940 (1082)
..+....... ++ ..-+|+..+.||.++ .+..||..+.+-........+. . ...+..-+|+..+.+
T Consensus 347 ~~l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r------~--~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH------Y--KSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc------c--cceEEEECCEEEEEC--
Confidence 3332111111 12 233688888887654 4678888775432211111111 0 112223456655555
Q ss_pred CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-----CcEEEEecCCc
Q 001415 941 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANL 995 (1082)
Q Consensus 941 ~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-----g~v~vwd~~~~ 995 (1082)
|.+.+||..+.+....-...........+ .-+|+..++|+.+ .+|..||..++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 45678888766554322211111122222 2367777878754 23555655544
No 436
>PHA03098 kelch-like protein; Provisional
Probab=93.75 E-value=2.7 Score=49.80 Aligned_cols=187 Identities=9% Similarity=0.024 Sum_probs=92.4
Q ss_pred cCCCeEEEee-C------CeEEEEecCCCeeEEEECC--CCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEecccce
Q 001415 796 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 861 (1082)
Q Consensus 796 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~ 861 (1082)
.++.+++.|+ + ..+..||..+.+-...-.. .......+. - ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666664 2 2477888877654322111 111122222 2 677888888653 57778877653
Q ss_pred e--eeeecccccCEEEEEEeCCCCEEEEEeCC------CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCc
Q 001415 862 V--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 933 (1082)
Q Consensus 862 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 933 (1082)
- ...+...... .+++ .-++++.+.||.+ ..+..||+.+.+....... +... . ...+...+++
T Consensus 370 W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r-----~-~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISH-----Y-GGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Cccc-----c-CceEEEECCE
Confidence 2 2222211111 1122 2367777777732 3578899887543221111 1111 1 1122334566
Q ss_pred EEEEEe-c--------CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC-----CcEEEEecCCcee
Q 001415 934 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 997 (1082)
Q Consensus 934 ~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d-----g~v~vwd~~~~~~ 997 (1082)
..+.+. . ..+.+||..+.+....-...........+.+ +++.++.|+.+ +.|.+||..+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 555532 1 2388889877654432211111111122222 77777777754 4677888776643
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.47 E-value=2.1 Score=49.73 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=76.0
Q ss_pred cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCC
Q 001415 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 544 (1082)
Q Consensus 466 ~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 544 (1082)
....-+.-|.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++--....
T Consensus 30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3444555555555 33334444579999998887554322 35788999999999999999999999999998432100
Q ss_pred ceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001415 545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1082)
Q Consensus 545 ~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1082)
.... ...-..+..+. +..++...+....|.++|..++++| +.+.|+|-
T Consensus 108 y~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0000 00001222222 2334445677777877776555444 56777764
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=1 Score=54.02 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=94.6
Q ss_pred CCCccEEEeecCCCeEEEee--CC-eEEEEecCCCeeEE-----EEC------CCCCCeeEEEEecCCCcEEEEEeCCCc
Q 001415 786 EEAVPCFALSKNDSYVMSAS--GG-KISLFNMMTFKTMA-----TFM------PPPPAATFLAFHPQDNNIIAIGMDDSS 851 (1082)
Q Consensus 786 ~~~i~~l~~s~dg~~l~~~s--dg-~i~iwd~~~~~~~~-----~~~------~~~~~v~~l~~sp~~~~~lasg~~dg~ 851 (1082)
.-.+..+...+|++..++.. +| .|..||+.+..... -+. .......++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788888766554 33 59999987543221 111 122345678888843445667778999
Q ss_pred EEEEecccce-eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcC
Q 001415 852 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 930 (1082)
Q Consensus 852 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 930 (1082)
|++..+.-.. ....+. -...+++++|+|.|+.++.|...|++.-|...-..+.. +..+... ....|.+|+|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~--e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVE--ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcC--CCcceeEEEEec
Confidence 9988765332 222222 45678999999999999999999999999766522211 1111111 125789999988
Q ss_pred CCcEEEE
Q 001415 931 DQIHFLV 937 (1082)
Q Consensus 931 dg~~l~~ 937 (1082)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888876
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.14 E-value=0.015 Score=62.18 Aligned_cols=241 Identities=16% Similarity=0.178 Sum_probs=134.1
Q ss_pred eEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCCeEE
Q 001415 723 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 802 (1082)
Q Consensus 723 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~ 802 (1082)
-...|.+.+..++.++.+..+..||-... ..... ........++|..+|..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq----------------------~~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ----------------------VILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc----------------------eeccc-----CCchhHhhhhhccccchhh
Confidence 34566677766888888877776653321 11110 1234445677777887666
Q ss_pred Eee--CCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeC
Q 001415 803 SAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 880 (1082)
Q Consensus 803 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 880 (1082)
... .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 554 58899999975322211111222222378999 889999999999999999888777666666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCC---CCcEEEEcCCCcEEEEEecCeEEEE--Ecc--Ccce
Q 001415 881 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ---SDTRVQFHQDQIHFLVVHETQLAIF--ETT--KLEC 953 (1082)
Q Consensus 881 d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~fspdg~~l~~~~d~~i~iw--d~~--~~~~ 953 (1082)
.+ +.+.++.|..+.+-...+.... ..+. .+.. ... ....=.|..-|..+....-+.+.+. .+. .+..
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~---ltev-ggep-dnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv 243 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETAS---LTEV-GGEP-DNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV 243 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceee---eeec-cCcc-chhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCcc
Confidence 77 4556666665544333321110 0000 0000 000 0011122233444443222221111 111 1111
Q ss_pred eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeee
Q 001415 954 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1000 (1082)
Q Consensus 954 ~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~ 1000 (1082)
-..+. ...+.+.++.|--||.. ..+.+-|.|.+-.+.++++...
T Consensus 244 al~fq--~~~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 244 ALQFQ--EKYGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred ceEee--ecCCceeEEEEeccccc-cccccceeEEEEeccchHHHHH
Confidence 11222 22567888888888764 4466677777777777776543
No 440
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.53 E-value=22 Score=40.12 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=45.8
Q ss_pred CCceeEEEEecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccC
Q 001415 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1082)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~ 498 (1082)
...|..+.+...|.+ -+|+.|| +..||..+++.+.. ........|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 164 d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCcE-EEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 347888888888854 4566777 77888888876642 1112235677777777777 66666554 55655443
No 441
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.49 E-value=23 Score=40.24 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=67.0
Q ss_pred CCCCceeEEEEecC----CCeEEEEeCCCeEEEEEccC-----Cceee-EEEEeeccccC--eeEEEecCCCCceEEEEE
Q 001415 418 DPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHG-----GDEVR-QHLEIDAHVGG--VNDIAFSHPNKQLCVITC 485 (1082)
Q Consensus 418 ~h~~~V~~l~~spd----g~~las~~~d~~v~iwd~~~-----~~~~~-~~~~~~~h~~~--V~~l~fs~dg~~~~l~s~ 485 (1082)
|.-..|..++|+|- -..|.+......|.||-+.- ++.+. +..++. ..-+ -..+.|.|... +|+.-
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~~--iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKKA--ILTVL 130 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCCCc--eEEEE
Confidence 33457999999993 32444455678899998762 22221 111111 0111 24678999888 45444
Q ss_pred eCCCcEEEEEccC--CceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecC
Q 001415 486 GDDKTIKVWDATN--GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1082)
Q Consensus 486 s~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 541 (1082)
.....-.+.+++. .+....++ ..+.|.|.||..++. +++++.+..=.-++||-.
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~-RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ-RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC-EEEEEeCCeEEEEEecCc
Confidence 4333334556543 33334454 568899999987554 344444444456788754
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.49 E-value=3.4 Score=45.94 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=80.6
Q ss_pred CCeeEEEEecCCCcEEEEEe-----------CCC-cEEEEeccc--cee--eeeecccccCEEEEEEeCCCCEEEEEeCC
Q 001415 828 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD 891 (1082)
Q Consensus 828 ~~v~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 891 (1082)
.....++|.+ +|+++++-. ..+ .|.+++-.+ |+. ...+.........|++.++| +++ ++.+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3567788888 777776542 223 677776442 321 23333333456889999998 444 4444
Q ss_pred CcEEEEEcCCccc---ccceeeeccCCC-CCCCCCCcEEEEcCCCcEEEE-Eec-------------------CeEEEEE
Q 001415 892 SQLCVWSSDGWEK---QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE 947 (1082)
Q Consensus 892 g~i~vwd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~-~~d-------------------~~i~iwd 947 (1082)
...++.+.+.... ....++...... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4233334433211 111222222211 001134678999999988776 311 2344455
Q ss_pred ccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC
Q 001415 948 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 984 (1082)
Q Consensus 948 ~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d 984 (1082)
.++++. ..+ ..+ ......++|+++|+++++-..+
T Consensus 171 pdg~~~-e~~-a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVV-AHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEE-ecC-cCCCccceECCCCCEEEEccCC
Confidence 544432 222 223 3446789999999987765433
No 443
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.46 E-value=14 Score=37.56 Aligned_cols=131 Identities=7% Similarity=0.044 Sum_probs=74.5
Q ss_pred CCCCcceeecccCCCCCCCCccEEEeecCCCeEEEeeCCeEEEEecCCCeeEEEECCC-CCCeeEEEEecCCCcEEEEEe
Q 001415 769 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGM 847 (1082)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~ 847 (1082)
+.++.......+.............|.+.|.+-+++..|.---.|..+ ..+..+... ......++..| +|.+.++.-
T Consensus 130 dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyasl 207 (353)
T COG4257 130 DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASL 207 (353)
T ss_pred cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEec
Confidence 455555555445444456677889999999998888633211112111 122222222 23466788889 777777666
Q ss_pred CCCcEEEEecccce--eeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 001415 848 DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 848 ~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 901 (1082)
.+..|-..|..++- .+..-.+....-..+--+|.|+.-+|....+.+.-+|...
T Consensus 208 agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 208 AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 67777777766652 1111112112233444567777777776677777777665
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.44 E-value=7.2 Score=38.32 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=83.1
Q ss_pred cEEEEEeCCCcEEEEeccc--ceeeeeecccccCEEEEEEeCCCCEEEEEeCCC------cEEEE-EcCCcccccceeee
Q 001415 841 NIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVW-SSDGWEKQKNRFLQ 911 (1082)
Q Consensus 841 ~~lasg~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vw-d~~~~~~~~~~~~~ 911 (1082)
..|..+...+.|.+|++.. .+.+.++..- +.|..+.++..|++|+|--.+. .+|+| +.+...........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3444446677899999983 3555666644 8899999999999999864332 45664 22221000011110
Q ss_pred ccCCC------------------CCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcce-ee-----eec---cCCC-C
Q 001415 912 IPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES-S 963 (1082)
Q Consensus 912 ~~~~~------------------~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~-~~-----~~~---~~~h-~ 963 (1082)
...|| .+....+.+++.-|-.--|+++.++.+.+|.+..... .. .|. ...| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 11111 0111456778888866667777788999998754433 11 111 0011 2
Q ss_pred cceeEEEEcCCCceEEEeecCCcEEEEec
Q 001415 964 APITHATFSCDSQLVYACFLDATVCVFSA 992 (1082)
Q Consensus 964 ~~i~~l~~s~dg~~l~t~s~dg~v~vwd~ 992 (1082)
-.+..++| -+.|+|..+ +-.++|..+
T Consensus 188 ~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 23455555 356888775 556666554
No 445
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.39 E-value=0.42 Score=32.65 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=25.4
Q ss_pred eecCCCCCceEEEEecCCCeEEEEEcCC--CcEEEE
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 386 (1082)
Q Consensus 353 ~~~~h~~~v~~~~~spdg~~llasgs~d--g~i~iw 386 (1082)
+++.......+.+|||||++|+.++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4455666788999999999988888877 776666
No 446
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.30 E-value=14 Score=39.32 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=105.7
Q ss_pred ccEEEeecCCCeEEE--ee---C--------CeEEEEecCCCeeEEEECCC------CCCeeEEEEecCCC----cEEE-
Q 001415 789 VPCFALSKNDSYVMS--AS---G--------GKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIA- 844 (1082)
Q Consensus 789 i~~l~~s~dg~~l~~--~s---d--------g~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~----~~la- 844 (1082)
|..+...++|++-+. |. . -+|.+||+.+.+.++++.-+ ......+.+...++ .++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666664443 21 1 26899999999988876533 23467777776322 2333
Q ss_pred EEeCCCcEEEEecccceeeeeeccc-------------------ccCEEEEEEeC---CCCEEEEEeCCCcEEEEEcCCc
Q 001415 845 IGMDDSSIQIYNVRVDEVKSKLKGH-------------------SKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW 902 (1082)
Q Consensus 845 sg~~dg~v~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~ 902 (1082)
+-...+.|.|+|+.+++..+.+..+ ...+..++.+| |+++|....-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 3334468999999988765554322 12366777765 777777766544 356666553
Q ss_pred ccccceeeecc--------CCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc---eeeeeccCCC-CcceeEE
Q 001415 903 EKQKNRFLQIP--------TGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITHA 969 (1082)
Q Consensus 903 ~~~~~~~~~~~--------~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h-~~~i~~l 969 (1082)
........... .|... .....++++++|....+ ...+.|..|+..+.- ....+..... -..+.++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred HhhCccccccccccccceeccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence 21111100000 01100 23467889999998888 577899999987521 1222222222 3567888
Q ss_pred EEcC--CCceEEEee
Q 001415 970 TFSC--DSQLVYACF 982 (1082)
Q Consensus 970 ~~s~--dg~~l~t~s 982 (1082)
.+.+ +|.+.+.++
T Consensus 240 ~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 240 KIDPEGDGYLWVLSN 254 (287)
T ss_dssp EE-T--TS-EEEEE-
T ss_pred eeccccCceEEEEEC
Confidence 8888 777666554
No 447
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=92.29 E-value=0.36 Score=44.21 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=51.8
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccchhhhc
Q 001415 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS 131 (1082)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 131 (1082)
++.. ++|.++-+.||||+..|...+|..|+.+.-..+.....+.++.|+.+....++..++...
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~ 88 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAK 88 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHH
Confidence 4554 999999999999999999999999999776666666778888888777776666655443
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=11 Score=43.74 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=106.7
Q ss_pred CCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEE
Q 001415 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1082)
Q Consensus 358 ~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1082)
-+.+-++..+|....=+. +..-.|+|++.. |+.+.+ ++-.|. .+-.+.||.+..+|.
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI~- 99 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELIC- 99 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEEE-
Confidence 344455555554321111 334557888764 444432 234444 888999998776554
Q ss_pred EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEE-EccCCceeEEeecC-CcCeEEE
Q 001415 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW-DATNGAKQYIFEGH-EAPVYSV 515 (1082)
Q Consensus 438 ~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vw-d~~~~~~~~~~~~h-~~~v~~~ 515 (1082)
...+|++++|++.....-............|..+.|..+|= .+.+. +|.+.+- +... ..++++..- .......
T Consensus 100 v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~-~~~~~~~diP~~~~~~~ 174 (829)
T KOG2280|consen 100 VQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE-PKLRKMPDIPYNELPKS 174 (829)
T ss_pred EeccceEEEeecchhhhcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc-chhhhCCCCCCccCCCc
Confidence 56999999999875432110011122334566666666553 23333 3444333 2221 122222210 0011111
Q ss_pred eeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
||.-..++. - ...+-++.-.-...........+....+++.. ..+.-+.++|+.++++--...
T Consensus 175 ~Wt~~~~~~-~-------~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~---------~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 175 CWTVFQPHR-Q-------STILLDVDVAVGLHICQVEESRVQLHALSWPN---------SSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred ceeEecCCC-c-------ceeEEeechhhhhcccceecccccccccCCCC---------ceEEEEEEcCCcceEEEEecC
Confidence 222111100 0 01111111000011111122223333333331 245556777777788888899
Q ss_pred CeEEEEECCCcceEEEEecCCCCCCcCeEEEcCC
Q 001415 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~d 629 (1082)
|.|.+-+.+..++...+....+..+ ..++|..+
T Consensus 238 G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgn 270 (829)
T KOG2280|consen 238 GKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGN 270 (829)
T ss_pred CcEEEEecchhhhhhccCCCCCCch-HhceeecC
Confidence 9999988887777766654433222 24555443
No 449
>PHA03098 kelch-like protein; Provisional
Probab=92.26 E-value=7.8 Score=45.87 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=76.2
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe---c----CeEEEEEc
Q 001415 881 ALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFET 948 (1082)
Q Consensus 881 d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---d----~~i~iwd~ 948 (1082)
+++.++.||.+ ..+..||..+++......+.... .-.++ ..-+++..+.+. + +.+..||.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-------~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-------YNPCV-VNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-------ccceE-EEECCEEEEECCcCCCCcccceEEEEeC
Confidence 67788888865 34677887775432211111111 11122 233566666632 1 35788998
Q ss_pred cCcceeeeeccCCCCcceeEEEEcCCCceEEEeecC--------CcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeE
Q 001415 949 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1020 (1082)
Q Consensus 949 ~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1020 (1082)
.+.+....-....... ...+...+++..+.|+.+ ..+.+||..+++-... .. ...+.. .+ ..
T Consensus 414 ~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~-~~~~r~--~~----~~ 483 (534)
T PHA03098 414 NTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SS-LNFPRI--NA----SL 483 (534)
T ss_pred CCCeeeecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CC-CCcccc--cc----eE
Confidence 7665433211111111 111223366777777643 2378888887654422 11 111111 11 11
Q ss_pred EEEeCCCCCeEEEEecC-----CcEEEEccCCCCCccccC
Q 001415 1021 IAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGVP 1055 (1082)
Q Consensus 1021 ~~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~~~~~~~ 1055 (1082)
+.+ ++.+++.||.+ +.|.++|+.+.. |...
T Consensus 484 ~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 518 (534)
T PHA03098 484 CIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT--WTLF 518 (534)
T ss_pred EEE---CCEEEEEcCCcCCcccceeEEEeCCCCE--EEec
Confidence 222 46788888765 467888887755 6543
No 450
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.21 E-value=3.8 Score=45.54 Aligned_cols=148 Identities=10% Similarity=0.116 Sum_probs=77.5
Q ss_pred cCEEEEEEeCCCCEEEEEe-----------CCC-cEEEEEcCCc--ccccceeeeccCCCCCCCCCCcEEEEcCCCcEEE
Q 001415 871 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGW--EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 936 (1082)
Q Consensus 871 ~~V~~l~~s~d~~~l~s~s-----------~Dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 936 (1082)
.....|+|.++|+++++-. ..+ .|.+++-..+ ...+...+. .+. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EEL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCC----CCccceeEecCC-EEE
Confidence 3456789999998877643 223 6766665432 221112221 111 234789999999 555
Q ss_pred EEecCeEEEE-EccCc-----c--ee-eeeccCC--CCcceeEEEEcCCCceEEEeecC-------------------Cc
Q 001415 937 VVHETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------AT 986 (1082)
Q Consensus 937 ~~~d~~i~iw-d~~~~-----~--~~-~~~~~~~--h~~~i~~l~~s~dg~~l~t~s~d-------------------g~ 986 (1082)
+. ...|..| |.+.. + .+ ..+.... +......++|.|||.+.++-+.. |.
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 44 3445444 44321 1 11 1222211 23457889999999876654421 33
Q ss_pred EEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCC
Q 001415 987 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1038 (1082)
Q Consensus 987 v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg 1038 (1082)
|.-++..+++.. .+ ..|+ ..+..++|++ +|+++++-..++
T Consensus 166 i~r~~pdg~~~e-~~------a~G~----rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLR-VV------AHGF----QNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEE-EE------ecCc----CCCccceECC-CCCEEEEccCCC
Confidence 444455444432 11 1121 3455799998 588876644333
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.13 E-value=23 Score=39.48 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=85.8
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccc-e
Q 001415 830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-R 908 (1082)
Q Consensus 830 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~-~ 908 (1082)
...+..++ ++.++++|.....++-||-....-...-......++++.|.+++.+++++ .+|.+ +|..+.++.... .
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccc
Confidence 34456667 77777766543333334422110011112234568999999999877655 56654 454444321100 1
Q ss_pred eeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeec-cCCCCcceeEEEEcCCCceEEEeecCCcE
Q 001415 909 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATV 987 (1082)
Q Consensus 909 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~i~~l~~s~dg~~l~t~s~dg~v 987 (1082)
+........ ...+..+.|.+++..++++..|.+.... +.|+.-.... ...-......+.|.++++.+++| .+|.|
T Consensus 318 f~~~~~~~~--~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 318 FEEADIKSR--GFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred eeecccCCC--CcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 111111100 1347889999999999888888766653 3444322222 11224567899998887777766 57776
Q ss_pred EEE
Q 001415 988 CVF 990 (1082)
Q Consensus 988 ~vw 990 (1082)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 654
No 452
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=91.66 E-value=0.44 Score=44.24 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=45.3
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccCHHHHHHHHHHhccccccchh
Q 001415 67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENE 128 (1082)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 128 (1082)
++.. ++|.++-+.||+|+..+..++|..|+.+...-+.....+.+++|..+....+...++
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~ 96 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENE 96 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccH
Confidence 4554 999999999999999999999999999877666665667777777655555554333
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.46 E-value=5.2 Score=43.87 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=87.5
Q ss_pred CCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCcCeEEEeeeecC------CceEEEEecCCCcEEEEecCCCCceee
Q 001415 475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSRVD 548 (1082)
Q Consensus 475 ~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~ 548 (1082)
.+...+++..|+....++--|++.|+.+..+..|..-| +.+.|.. +.+.|+ |-.+..|.-.|.+.......
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence 33444466677777888889999999999998776653 3444432 122343 44455555455543332221
Q ss_pred ecCCCCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcC
Q 001415 549 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1082)
Q Consensus 549 ~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 628 (1082)
.......++.-.|+. .......++++++..|.|++||--.......+.+-+. .|..+..+.
T Consensus 553 v~esKdY~tKn~Fss-----------------~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta 613 (776)
T COG5167 553 VVESKDYKTKNKFSS-----------------GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTA 613 (776)
T ss_pred eeeehhccccccccc-----------------cccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeec
Confidence 111111111111111 1112334899999999999999654444444444444 688899999
Q ss_pred CCCEEEEEECCCcEEEEEe
Q 001415 629 DGCLLAVSTNDNGIKILAT 647 (1082)
Q Consensus 629 dg~~l~~~~~dg~i~iwd~ 647 (1082)
+|+++++.+. ..+.+-|+
T Consensus 614 ~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 614 NGKHILATCK-NYLLLTDV 631 (776)
T ss_pred CCcEEEEeec-ceEEEEec
Confidence 9999888775 44555554
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.33 E-value=28 Score=38.83 Aligned_cols=151 Identities=9% Similarity=-0.024 Sum_probs=82.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcc
Q 001415 873 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 952 (1082)
Q Consensus 873 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~ 952 (1082)
...+..++||.+++.+..-..++-||--... ........ ...+..+.|.+++..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4455667888777766543323334332200 01111111 14578999999999998887777543 333443
Q ss_pred e-----eeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCC
Q 001415 953 C-----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1027 (1082)
Q Consensus 953 ~-----~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d 1027 (1082)
. ........-...+.++.|.+|+..+++| ..|.+... .+.|+.-......... ....+ .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~-----~~~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNI-----AANLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCC-----Cccee--EEEEcC--
Confidence 1 1222111112458999999988877655 57776655 4556554443311111 11134 788776
Q ss_pred CCeEEEEecCCcEEEE
Q 001415 1028 PNEFALGLSDGGVHVF 1043 (1082)
Q Consensus 1028 ~~~l~s~~~dg~v~vW 1043 (1082)
.+.....+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 2445555678887655
No 455
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.23 E-value=26 Score=38.21 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=89.5
Q ss_pred CCCCccEEEeec-CCCeEEEeeCCe------EEEEecCC--C--eeE-----EEECCCCC--------CeeEEEEecCCC
Q 001415 785 PEEAVPCFALSK-NDSYVMSASGGK------ISLFNMMT--F--KTM-----ATFMPPPP--------AATFLAFHPQDN 840 (1082)
Q Consensus 785 ~~~~i~~l~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~v~~l~~sp~~~ 840 (1082)
.-+.+..+.+.+ ++.+++...+|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678889985 555555554455 55555443 1 111 11222222 344788866 78
Q ss_pred cEEEEEeCC------CcEEEEecccceeeeeec---------------ccccCEEEEEEeCCCCEEEEEeC-----CC--
Q 001415 841 NIIAIGMDD------SSIQIYNVRVDEVKSKLK---------------GHSKRITGLAFSHALNVLVSSGA-----DS-- 892 (1082)
Q Consensus 841 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~d~~~l~s~s~-----Dg-- 892 (1082)
.++++.-.+ ..|+.++.. |+.+..+. ......-+|+++|||+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 788776666 678888866 65544431 12346789999999997666533 22
Q ss_pred c-------EEEEEcCCcc---cccceeeeccCC-CCCCCCCCcEEEEcCCCcEEEE--E----ecCeEEEEEc
Q 001415 893 Q-------LCVWSSDGWE---KQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--V----HETQLAIFET 948 (1082)
Q Consensus 893 ~-------i~vwd~~~~~---~~~~~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~--~----~d~~i~iwd~ 948 (1082)
. ++++..+... ............ .......++.+.+-+++++|+. . ....++||.+
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 1 5565554322 111112222210 0002257899999999998887 2 2335555544
No 456
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.90 E-value=20 Score=36.41 Aligned_cols=234 Identities=10% Similarity=0.050 Sum_probs=143.1
Q ss_pred cceeEEEEccCCceeeecccCCeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeecCCC
Q 001415 720 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 799 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 799 (1082)
.....++-.+||...+++...+.+- -.|+.+|+.....+. .......+..-|||.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiG----------------------hLdP~tGev~~ypLg---~Ga~Phgiv~gpdg~ 116 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIG----------------------HLDPATGEVETYPLG---SGASPHGIVVGPDGS 116 (353)
T ss_pred CCccccccCCCCceEEecCccccce----------------------ecCCCCCceEEEecC---CCCCCceEEECCCCC
Confidence 3445567777777666655554432 238888887776664 455567788888887
Q ss_pred eEEEeeCCeEEEEecCCCeeEEE---ECCCCCCeeEEEEecCCCcEEEEEeCC---------CcEEEEecccceeeeeec
Q 001415 800 YVMSASGGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKLK 867 (1082)
Q Consensus 800 ~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~lasg~~d---------g~v~iwd~~~~~~~~~l~ 867 (1082)
.-++-+...|.-.|-++.+..+- ............|.+ .|++-+++... +.|++|+...
T Consensus 117 ~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------- 187 (353)
T COG4257 117 AWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------- 187 (353)
T ss_pred eeEecCcceeEEecCcccceEEeecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCC--------
Confidence 66554433566666655443321 122344577888999 88888887631 2344444332
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEE
Q 001415 868 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIF 946 (1082)
Q Consensus 868 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iw 946 (1082)
...-+.|+..|||..-++.-.+..|-.-|..++. .+.+..+.... .....+--+|.|+.-++ ...+.+..|
T Consensus 188 --G~gpyGi~atpdGsvwyaslagnaiaridp~~~~---aev~p~P~~~~---~gsRriwsdpig~~wittwg~g~l~rf 259 (353)
T COG4257 188 --GGGPYGICATPDGSVWYASLAGNAIARIDPFAGH---AEVVPQPNALK---AGSRRIWSDPIGRAWITTWGTGSLHRF 259 (353)
T ss_pred --CCCCcceEECCCCcEEEEeccccceEEcccccCC---cceecCCCccc---ccccccccCccCcEEEeccCCceeeEe
Confidence 2335678889999988877777777777776652 23344443322 23455666777887777 466788888
Q ss_pred EccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCce
Q 001415 947 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 996 (1082)
Q Consensus 947 d~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~ 996 (1082)
|..+.. -..+...+....-.++.....|+.-.+--..|.|.-+|-.+..
T Consensus 260 dPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 260 DPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred Cccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce
Confidence 876655 4455555555566667766666655544445555555555443
No 457
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.82 E-value=29 Score=44.62 Aligned_cols=149 Identities=14% Similarity=0.197 Sum_probs=88.3
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEE
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1082)
|-..++.|.-+++|.++=+ .|+.++.||..+.. |... -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 6677788888888885322 58888888877553 3310 112233566666666777766
Q ss_pred EEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEeCCCcEEEEEccCC------ce--eEEeecC
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AK--QYIFEGH 508 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~------~~--~~~~~~h 508 (1082)
.++. .|-|+..+.... ..-..|.+...+++|.- .+.++-...++.+|++... ++ .-.+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133555443211 12245777788899983 4667777777899998753 11 1122333
Q ss_pred CcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1082)
.....++.++ ++ .|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 3345556653 32 588888888888776654
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.67 E-value=0.68 Score=31.96 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCceEEEEecCCC--eEEEEEcCCCcEEEEEccc
Q 001415 359 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGS 390 (1082)
Q Consensus 359 ~~v~~~~~spdg~--~llasgs~dg~i~iwd~~~ 390 (1082)
+.|.+++|||+.- -||+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999997543 4788888889999999985
No 459
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.61 E-value=53 Score=40.79 Aligned_cols=112 Identities=8% Similarity=0.039 Sum_probs=58.5
Q ss_pred ecCCCeEEEEeCCCeEEEEEccCCceeeEEEEeec-cccCeeEEEecCCCCceEEEEEe-C-CCcEEEEEccC-Ccee--
Q 001415 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG-D-DKTIKVWDATN-GAKQ-- 502 (1082)
Q Consensus 429 spdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~~~l~s~s-~-d~~i~vwd~~~-~~~~-- 502 (1082)
+-.+.++++-+..|.|.+++++.....- .+.. +...+.++...+|-+. .+.+-+ . ++.=-.|-... +.-+
T Consensus 633 sv~dpyv~v~~~~g~i~~~~l~~~s~rl---~~~~~~s~~~~sv~~~~dlsg-~f~~~s~l~~k~~~~~gr~~~~~~~~~ 708 (1366)
T KOG1896|consen 633 SVADPYVAVRSSEGRITLYDLEEKSHRL---ALHDPMSFKVVSVSLPADLSG-MFTTLSDLSLKGNEANGRSSEAEGLQS 708 (1366)
T ss_pred eccCceEEEEEcCCceEEEEeccccchh---hccCcccceeEEEechhhhcc-ceEEEeeecccCccccccccccccccc
Confidence 3467799999999999999998752111 1222 4566777777776554 233333 0 01111111110 0000
Q ss_pred --EEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec
Q 001415 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1082)
Q Consensus 503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 550 (1082)
....+..+. .+..+..+++.+..+|++.++++..........
T Consensus 709 ~~~kv~~~egg------~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~ 752 (1366)
T KOG1896|consen 709 LPCKVDDEEGG------SPEQEPYWCVFVTESGTLEIYALPDFDLVFEVD 752 (1366)
T ss_pred CCccccCCCCC------CcccCceEEEEEcCCCceEEEccCCcceEEEee
Confidence 111111110 111111577788889999999888766655444
No 460
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.04 E-value=4.6 Score=48.87 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred CccEEEeecCCC--eEEEeeCCeEEEEecCCCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeee
Q 001415 788 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 865 (1082)
Q Consensus 788 ~i~~l~~s~dg~--~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 865 (1082)
...++.|.|.-. .++.-.|+.|++..+........--.....+++++|+| .|+.+++|...|++.-|... ++....
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 345566665433 33334578888877653322222122455689999999 89999999999999988754 333333
Q ss_pred ecc----cccCEEEEEEeCCCCEEEEE
Q 001415 866 LKG----HSKRITGLAFSHALNVLVSS 888 (1082)
Q Consensus 866 l~~----h~~~V~~l~~s~d~~~l~s~ 888 (1082)
+.+ ...+|.+|+|-....+|++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 321 14689999998877777764
No 461
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.03 E-value=11 Score=40.92 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=90.4
Q ss_pred CCeeEEEEecCCCcEEEEEeCCCc------EEEEeccc--c--eee-----eeeccccc--------CEEEEEEeCCCCE
Q 001415 828 PAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALNV 884 (1082)
Q Consensus 828 ~~v~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~~ 884 (1082)
+....+.+.++++.+++ -+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 45677888863554444 556666 65555543 1 000 11111111 3347888888988
Q ss_pred EEEEeCC------CcEEEEEcCCcccccceeeeccC-------CCCCCCCCCcEEEEcCCCcEEEEEe------cC--e-
Q 001415 885 LVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVVH------ET--Q- 942 (1082)
Q Consensus 885 l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~~------d~--~- 942 (1082)
+++.-.+ ..|..++.+ +.......+.... ...........++++|||+.|.+.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887667 778788766 3332211111110 1122336778999999999555521 22 1
Q ss_pred ------EEEE--EccC-cceeeeec--cCC-----CCcceeEEEEcCCCceEEEee-----cCCcEEEEecC
Q 001415 943 ------LAIF--ETTK-LECVKQWV--PRE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 993 (1082)
Q Consensus 943 ------i~iw--d~~~-~~~~~~~~--~~~-----h~~~i~~l~~s~dg~~l~t~s-----~dg~v~vwd~~ 993 (1082)
++++ |..+ +.....+. ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 4454 4444 32333332 211 356789999999999877532 23456666544
No 462
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.92 E-value=0.72 Score=53.69 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=92.4
Q ss_pred CCCCceEEEEe----cCCCeEEEEEcCCCcEEEEEcc--ccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEec
Q 001415 357 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 357 h~~~v~~~~~s----pdg~~llasgs~dg~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1082)
-.+.|--++|- |.+. -.-|...|||++ .|+......++ +...-...+.-+.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeecc
Confidence 45666666663 3333 223678899885 34433322222 1222333445555555
Q ss_pred ---CCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEe-----------cCCCCceEEEEEeCCCcEEEEEc
Q 001415 431 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDA 496 (1082)
Q Consensus 431 ---dg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~f-----------s~dg~~~~l~s~s~d~~i~vwd~ 496 (1082)
+.-++..+-.++.|++.++.+...- -+.+|...+..++| ||||+ .++.++.||.++.|-+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRS----LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHH----HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 6678888888899998777665431 25568877776665 78888 7888888998888865
Q ss_pred c-----CCceeEEeecCCcCeEEEeeeecCC---------ceEEEEecC-CCcEEEEecCCCCc
Q 001415 497 T-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGS 545 (1082)
Q Consensus 497 ~-----~~~~~~~~~~h~~~v~~~~~~~~~~---------~~~l~s~~~-dg~i~iwd~~~~~~ 545 (1082)
. ..+|++..+.|.+.-. +||+.... -.++++++. ...+++|....-.+
T Consensus 265 yi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 3 2345555666663211 12222111 124444444 45688886554333
No 463
>PHA02790 Kelch-like protein; Provisional
Probab=89.69 E-value=18 Score=42.01 Aligned_cols=185 Identities=8% Similarity=0.015 Sum_probs=92.5
Q ss_pred CCcEEEEEeCCC-----cEEEEeccccee--eeeecccccCEEEEEEeCCCCEEEEEeCC--CcEEEEEcCCccccccee
Q 001415 839 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF 909 (1082)
Q Consensus 839 ~~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~ 909 (1082)
++.++++|+.++ .+..||..+++- +..+........ ++ .-++...+.||.+ .++..||..+++......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 566777777543 466788776542 222221111122 22 2467777888764 357788876543221111
Q ss_pred eeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec---CeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCC
Q 001415 910 LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 985 (1082)
Q Consensus 910 ~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg 985 (1082)
+... .....+..-+|+..+. +.+ ..+..||..+.+....-........ ..+..-+|+..+.| |
T Consensus 349 l~~~--------r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G 415 (480)
T PHA02790 349 LLKP--------RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVG---R 415 (480)
T ss_pred CCCC--------CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEEC---C
Confidence 1110 1111222346666666 322 3577888876654432221111111 11223467766666 4
Q ss_pred cEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecC-----CcEEEEccCCCC
Q 001415 986 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1049 (1082)
Q Consensus 986 ~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1049 (1082)
.+.+||..+.+-.. +.+. ..+.. .. .++.. ++.+.+.||.+ ..+..+|+.+++
T Consensus 416 ~~e~ydp~~~~W~~-~~~m-~~~r~--~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTL-IDDP-IYPRD--NP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeE-cCCC-CCCcc--cc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57789887664432 2211 11111 11 22222 47888888865 357788888765
No 464
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.66 E-value=3.2 Score=44.61 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=89.5
Q ss_pred eeEEEECCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceee-eee-ccccc----CEE-EEEEeCCCCEEEEEeC
Q 001415 818 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGA 890 (1082)
Q Consensus 818 ~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~s~ 890 (1082)
+.+..+......+..+-..| |++.+.+-+. .++.++++.+.... +++ ....+ .|+ ++..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555667788899999 8888876654 67888888754321 111 11111 121 1122234666888889
Q ss_pred CCcEEEE-EcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcceeeeeccCCCCcceeE
Q 001415 891 DSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH 968 (1082)
Q Consensus 891 Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~ 968 (1082)
||-|.-| |+..+........+... .....+..+.--...+-++. ...|++.++.....+.+..-. --..+.-
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~---l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFK---LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccc---cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcce
Confidence 9988877 44432211111111111 00011111111111222222 345666665543333221111 1235677
Q ss_pred EEEcCCCceEEEeecCCcEEEEecCCcee
Q 001415 969 ATFSCDSQLVYACFLDATVCVFSAANLKL 997 (1082)
Q Consensus 969 l~~s~dg~~l~t~s~dg~v~vwd~~~~~~ 997 (1082)
+++||.+.+|++- +.|.++++.+++...
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCCCC
Confidence 8999999999865 468899998877554
No 465
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.36 E-value=1.6 Score=30.20 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred CceeEEEEecC-C--CeEEEEeCCCeEEEEEccCC
Q 001415 421 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 452 (1082)
Q Consensus 421 ~~V~~l~~spd-g--~~las~~~d~~v~iwd~~~~ 452 (1082)
+.|.++.|||+ + .+||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58998888899999999853
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.19 E-value=8.7 Score=45.36 Aligned_cols=132 Identities=6% Similarity=0.049 Sum_probs=74.4
Q ss_pred eEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeec-CC-CCceEEEEEccCCCeeeecccccceeEEEec--CCCC
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-AP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFD--TTKN 587 (1082)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~--~~~~ 587 (1082)
|+.+.+..-.+...|+.|..||.|.+|..+.--...... .. ......+...|+ +.-......+.++++ ...+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~----f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF----FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC----eEeecCCceeEEEEEecCcce
Confidence 344433333455789999999999999764311110000 00 000000122222 222233366777777 6667
Q ss_pred EEEEEeCCCeEEEEECCCc-ceEEEEecCCCCCCcCeEEEcCCC---C---EEEEEECCCcEEEEEe
Q 001415 588 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDG---C---LLAVSTNDNGIKILAT 647 (1082)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~dg---~---~l~~~~~dg~i~iwd~ 647 (1082)
.+|+++....|.||-.... ........+.+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7778888888888865442 111111122233468999997743 2 7888899999999887
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.06 E-value=25 Score=34.73 Aligned_cols=113 Identities=13% Similarity=0.208 Sum_probs=69.4
Q ss_pred CccEEEeecCCCeEEEeeCCeEEEEecC--CCeeEEEECCCCCCeeEEEEecCCCcEEEEEeCCC------cEEEE---e
Q 001415 788 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 856 (1082)
Q Consensus 788 ~i~~l~~s~dg~~l~~~sdg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg------~v~iw---d 856 (1082)
....++.++.+.++++.+.+.|.+|++. ..+...++..- +.|..++++. .|.+|++--++. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3445555554555565667889999988 45566677654 7899999999 899999864432 55665 2
Q ss_pred cc--cceee-eeeccc---------------------ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcc
Q 001415 857 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 903 (1082)
Q Consensus 857 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 903 (1082)
.. ..+.+ .++-|| ..++.+++-.|-..-|+.|+ ++.+.+|.+....
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 22 11111 123332 23456676666544455555 4568999887643
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.54 E-value=42 Score=36.75 Aligned_cols=196 Identities=9% Similarity=0.086 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEe----CCCCE--EEEEe-CC---CcEEEEEcCCcccccce
Q 001415 839 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR 908 (1082)
Q Consensus 839 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--l~s~s-~D---g~i~vwd~~~~~~~~~~ 908 (1082)
...+++....++-+.+||+.. +.+..+. .++++.+..- -+|+. |+.++ .+ .+|++|.++.... .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence 445777777888999999884 4445553 2344544432 13433 44444 32 4699998875211 1
Q ss_pred eeeccCC-C--CCCCCCCcEEEE--cC-CCcEEEE--EecCeEEEEEcc---Cc----ceeeeeccCCCCcceeEEEEcC
Q 001415 909 FLQIPTG-R--TPTAQSDTRVQF--HQ-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSC 973 (1082)
Q Consensus 909 ~~~~~~~-~--~~~~~~v~~~~f--sp-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~i~~l~~s~ 973 (1082)
+...... + ......+..+|+ ++ +|.+.+. ..+|.+.-|.+. .+ +.++.|.. .+.+..+....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD 217 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD 217 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence 1111110 0 011123456666 33 4665555 467877777653 33 45677764 34788888888
Q ss_pred CCceEEEeecCCcEEEEecCC-----ceeeeeeCCCeecCCCCCCCCceeeEEEEeCC-CCCeEEEEecCCcEEEEccCC
Q 001415 974 DSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 974 dg~~l~t~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~-d~~~l~s~~~dg~v~vW~~~~ 1047 (1082)
...+|+.+-++--|.-|+.+- +..+.... ..|-...+-.+.+-..++ .|.+|+|.-.+++..||+...
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~------g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD------GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS------SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeeccc------ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888999998887777777652 22222221 111122255566655542 344667777778999999876
Q ss_pred CC
Q 001415 1048 SE 1049 (1082)
Q Consensus 1048 ~~ 1049 (1082)
..
T Consensus 292 ~~ 293 (381)
T PF02333_consen 292 PN 293 (381)
T ss_dssp T-
T ss_pred CC
Confidence 43
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=13 Score=40.35 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=86.7
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-EecCeEEEEEccCcc
Q 001415 874 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 952 (1082)
Q Consensus 874 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~iwd~~~~~ 952 (1082)
+.+-|. |.+..+.+-..|.+.=|.++.....- ..... ....+.|.++.||+|.+.||+ -.+..|.+++....+
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDV--piSfd---m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDV--PISFD---MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCCC--Cceee---ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 344444 33333333344556677666532111 11111 111267899999999999999 688999998873332
Q ss_pred ee--eeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCe
Q 001415 953 CV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1030 (1082)
Q Consensus 953 ~~--~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~ 1030 (1082)
.. ....+...+..|...+|+.. .-+|..+ +.-+.+|.+...+...++- .. +...+-..+|.+. .+.
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekrslRlV------ks---~~~nvnWy~yc~e-t~v 167 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKRSLRLV------KS---HNLNVNWYMYCPE-TAV 167 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhhhhhhh------hh---cccCccEEEEccc-cce
Confidence 22 22222233556899999876 4455554 4456677665433322211 11 2233447889984 443
Q ss_pred -E-EEEecCCcEEEEccCCCC
Q 001415 1031 -F-ALGLSDGGVHVFEPLESE 1049 (1082)
Q Consensus 1031 -l-~s~~~dg~v~vW~~~~~~ 1049 (1082)
| +++-..+++.=+-++++.
T Consensus 168 ~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 168 ILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EeeeccccccccccEEEeece
Confidence 3 333355666666666665
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.16 E-value=5.6 Score=45.50 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=38.8
Q ss_pred cCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccCCceeeecccCCeEEEee
Q 001415 679 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 747 (1082)
Q Consensus 679 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw~ 747 (1082)
.|.++.++.+..||.+.+|+.........+.. ..+-..+.|...| +++.++|....-|.
T Consensus 23 hp~~~s~v~~~~d~si~lfn~~~r~qski~~~--------~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 23 HPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--------AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cCCCceEEEEecCCcEEEEeecccchhhhhhh--------cCCccceeeeccc--eEEEeccchhheee
Confidence 58899999999999999999876443333321 1223445666655 56666666666664
No 471
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.15 E-value=77 Score=39.28 Aligned_cols=174 Identities=11% Similarity=0.143 Sum_probs=103.1
Q ss_pred CCCCccEEEee---c----CCCeEEEeeCCeEEEEecCCC---------------eeEEEECC---CCCCeeEEEEecCC
Q 001415 785 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD 839 (1082)
Q Consensus 785 ~~~~i~~l~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~l~~sp~~ 839 (1082)
...+|..|+|+ . ..++|++-....+.|+...-. .++..+.. .......++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888887 2 234777777777888872211 12222221 22346677888777
Q ss_pred CcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCC
Q 001415 840 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 919 (1082)
Q Consensus 840 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 919 (1082)
...||+-...|...||++..... .+. .. +-+.....|.| +.|....
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~----------~~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SN----------LRLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cCC-cc----------eeeccCCCccc-cCCCccc-----------------
Confidence 77888888888888888721110 000 11 11112222333 2222210
Q ss_pred CCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCC--CceEEEeecCCcEEEEecCCc
Q 001415 920 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 995 (1082)
Q Consensus 920 ~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~d--g~~l~t~s~dg~v~vwd~~~~ 995 (1082)
..-..+.|.++-..|++++...+.++|+++......+........|..+.-+|+ +..++.. ...|.+.++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 223578899998899999999999999987766442332344678999998887 3333332 257777787763
No 472
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.11 E-value=13 Score=43.00 Aligned_cols=130 Identities=9% Similarity=-0.004 Sum_probs=72.2
Q ss_pred EEEcCCCcEEEEEecCeEEEEEccCcceeeeeccCCCC-cceeEEEEcCCCceEEEeec-------------CCcEEEEe
Q 001415 926 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACFL-------------DATVCVFS 991 (1082)
Q Consensus 926 ~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~dg~~l~t~s~-------------dg~v~vwd 991 (1082)
+.+-++|.+++... ..+..+|. .|+.+..+...+.. .-=..+..-|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888887644 77888887 46666666543311 01134567899999888772 12356667
Q ss_pred cCCceeeeeeCCCeecC-C----------------CCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCCCcccc
Q 001415 992 AANLKLRCRINPSAYLP-A----------------GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1054 (1082)
Q Consensus 992 ~~~~~~~~~~~~~~~~~-~----------------gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~ 1054 (1082)
.+|+.+..+.....+. . +...++.+.-++.+.+.++.+++++-.-..|...|..+++-.|.+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8888877665444331 1 112444566789999976667776666669999999999988888
Q ss_pred CCCC
Q 001415 1055 PPPV 1058 (1082)
Q Consensus 1055 ~~~~ 1058 (1082)
..+-
T Consensus 310 g~~~ 313 (477)
T PF05935_consen 310 GPPG 313 (477)
T ss_dssp S-ST
T ss_pred CCCC
Confidence 7653
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=12 Score=46.46 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=92.9
Q ss_pred eCCCcEEEEecccceeeeeecccccCEEEEEEe--------CCCCEEEEEeCCCcEEEEEcCCcccccc--eeeeccCCC
Q 001415 847 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKN--RFLQIPTGR 916 (1082)
Q Consensus 847 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~~~~~~~~ 916 (1082)
+-|..+.+|+..++.....+.+-+..|..+..- |.=+++...+.--.|.++-+.-.+.... .+..... -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 358899999999987788888877778777653 2223444444445577765544322111 1111100 0
Q ss_pred CCCCCCCcEEEEcCCCcEEEEEecCeEEEE--EccCc---c-ee-------------ee-ecc-CCCCcceeEEEEcCCC
Q 001415 917 TPTAQSDTRVQFHQDQIHFLVVHETQLAIF--ETTKL---E-CV-------------KQ-WVP-RESSAPITHATFSCDS 975 (1082)
Q Consensus 917 ~~~~~~v~~~~fspdg~~l~~~~d~~i~iw--d~~~~---~-~~-------------~~-~~~-~~h~~~i~~l~~s~dg 975 (1082)
......|.++....+|+.+.+|.||.++=. ....+ + |- .. +.. ..+.++|..++.....
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 011245788898999999999988854322 22111 1 10 00 111 2457799999998888
Q ss_pred ceEEEeecCCcEEEEecCC
Q 001415 976 QLVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 976 ~~l~t~s~dg~v~vwd~~~ 994 (1082)
..|.+-++.|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999986
No 474
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.85 E-value=2.6 Score=49.54 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=79.7
Q ss_pred CceEEEEecCC-CeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCC--CcccccccccCCCCceeEEEEe--cCCCe
Q 001415 360 SPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWS--PDGSL 434 (1082)
Q Consensus 360 ~v~~~~~spdg-~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~h~~~V~~l~~s--pdg~~ 434 (1082)
.|+.|....=| +.+|+.+..||.|.+|.+++=-...... .-+.... .......+.......++.+++. ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 35555444322 2378889999999999874311000000 0000000 0000011122334589999999 88899
Q ss_pred EEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCC--c--eEEEEEeCCCcEEEEEcc
Q 001415 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK--Q--LCVITCGDDKTIKVWDAT 497 (1082)
Q Consensus 435 las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~--~--~~l~s~s~d~~i~vwd~~ 497 (1082)
||+++....|.||-......-.....-..|...|-+|+|-++.. . ..+++++-.|.+.+|++.
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 99999999888887654211111111123667899999977651 1 368889999999998873
No 475
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.79 E-value=23 Score=40.85 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEe--------------cC
Q 001415 876 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--------------ET 941 (1082)
Q Consensus 876 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--------------d~ 941 (1082)
+.+.++|.+++..+ ..+..+|+.+... .. .....+.. ..--.+.+-|+|.+|+.+. +.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~-~~--~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKVI-WE--YDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--EE-EE--EE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCEE-Ee--eecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence 55678888887665 6677788765321 11 11111100 0013577889999888754 23
Q ss_pred eEEEEEccCcceeeeeccCCCC-------------------------cceeEEEEcC-CCceEEEeecCCcEEEEecCCc
Q 001415 942 QLAIFETTKLECVKQWVPRESS-------------------------APITHATFSC-DSQLVYACFLDATVCVFSAANL 995 (1082)
Q Consensus 942 ~i~iwd~~~~~~~~~~~~~~h~-------------------------~~i~~l~~s~-dg~~l~t~s~dg~v~vwd~~~~ 995 (1082)
.|..+| .+|+.+..|....|- -.++++.+.+ ++.+|+++-.-..|...|..++
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 466667 777777766544331 2478899988 5666665555568888999999
Q ss_pred eeeeeeCCCe
Q 001415 996 KLRCRINPSA 1005 (1082)
Q Consensus 996 ~~~~~~~~~~ 1005 (1082)
++.-.+..+.
T Consensus 304 ~i~Wilg~~~ 313 (477)
T PF05935_consen 304 KIKWILGPPG 313 (477)
T ss_dssp -EEEEES-ST
T ss_pred cEEEEeCCCC
Confidence 9988777443
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=10 Score=47.79 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCcEEEEEecCeEEEEEccCcceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCcee
Q 001415 931 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 997 (1082)
Q Consensus 931 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~ 997 (1082)
....+.....+.+.+|+.........+...++ ..+.++..++++..||.+..||...+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 209 PTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-------LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred CCCcceeeeeeeeeehhcccccchhhcccccc-------cCccCCceEEEEEecCCEEeeecCCCce
Confidence 33333333444555555443333333333222 2288999999999999999999999866
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=11 Score=36.52 Aligned_cols=159 Identities=13% Similarity=-0.008 Sum_probs=94.6
Q ss_pred CCCEEEEEeCC--CcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCcceeeeec
Q 001415 881 ALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 958 (1082)
Q Consensus 881 d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~ 958 (1082)
+|.++.+.+.- ..|++||+.+++....+.+....... ..+.-..|.-+..+-.++.-..||.++.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg------EGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG------EGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc------cceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 56777777653 45999999987765544444111111 12233345556666789999999999999988876
Q ss_pred cCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCCceeeeeeCCCeecCCCCCCCCce-eeEEEEeCCCCCeEEEEecC
Q 001415 959 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH-PLVIAAHPQEPNEFALGLSD 1037 (1082)
Q Consensus 959 ~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~-~~~~~~~~~d~~~l~s~~~d 1037 (1082)
..+ .=+.++ .|++-|..++...++..-|-.+.....++.... .| ..|. .--+.|. ||...|-.-.+
T Consensus 129 y~G---eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~---~g---~pv~~LNELE~V--dG~lyANVw~t 195 (262)
T COG3823 129 YEG---EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD---DG---VPVSKLNELEWV--DGELYANVWQT 195 (262)
T ss_pred cCC---cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEE---CC---eecccccceeee--ccEEEEeeeee
Confidence 544 223333 466667766555566666666655544433111 01 1111 1124444 57777777778
Q ss_pred CcEEEEccCCCC-CccccCCCC
Q 001415 1038 GGVHVFEPLESE-GKWGVPPPV 1058 (1082)
Q Consensus 1038 g~v~vW~~~~~~-~~~~~~~~~ 1058 (1082)
..|...++.+|+ ..|....+.
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L 217 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGL 217 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCC
Confidence 888888888888 444443333
No 478
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.09 E-value=16 Score=39.77 Aligned_cols=105 Identities=5% Similarity=0.042 Sum_probs=69.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEE
Q 001415 868 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 947 (1082)
Q Consensus 868 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd 947 (1082)
...++|.++.||+|.+.||.--.|.+|.+.+....+....... .+......|....|+.. .-+|...+..+.+|-
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~----~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~ 138 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ----ECKTKNANILGFCWTSS-TEIAFITDQGIEFYQ 138 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH----HhccCcceeEEEEEecC-eeEEEEecCCeEEEE
Confidence 3567999999999999999999999999999855332211111 11111145788888877 666666666677776
Q ss_pred ccCc-ceeeeeccCCCCcceeEEEEcCCCceEE
Q 001415 948 TTKL-ECVKQWVPRESSAPITHATFSCDSQLVY 979 (1082)
Q Consensus 948 ~~~~-~~~~~~~~~~h~~~i~~l~~s~dg~~l~ 979 (1082)
.... +.++..+ .|.-.|....|.++-..++
T Consensus 139 v~pekrslRlVk--s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 139 VLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred Echhhhhhhhhh--hcccCccEEEEccccceEe
Confidence 5332 2223222 4567788888888877543
No 479
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.96 E-value=4.4 Score=40.91 Aligned_cols=78 Identities=6% Similarity=0.084 Sum_probs=53.6
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCcccccce--eeeccCCC----CCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCc
Q 001415 878 FSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR----TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 951 (1082)
Q Consensus 878 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~ 951 (1082)
+..++.+|+..+.+|.+++||+.+++..... +....... ......|..+.++.+|.-+++-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999996643322 11111100 01225678899999999988877788999987655
Q ss_pred ceee
Q 001415 952 ECVK 955 (1082)
Q Consensus 952 ~~~~ 955 (1082)
.-+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 4433
No 480
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.76 E-value=71 Score=35.58 Aligned_cols=205 Identities=15% Similarity=0.106 Sum_probs=103.5
Q ss_pred EecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEeCCCeEE
Q 001415 366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ 445 (1082)
Q Consensus 366 ~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~ 445 (1082)
.--||+ +.++..+|.|.-.|.+++..+ |..... +....+.+-.+..+|+ |.+++.++.+.
T Consensus 65 ~~~dg~--v~~~~~~G~i~A~d~~~g~~~-------W~~~~~----------~~~~~~~~~~~~~~G~-i~~g~~~g~~y 124 (370)
T COG1520 65 ADGDGT--VYVGTRDGNIFALNPDTGLVK-------WSYPLL----------GAVAQLSGPILGSDGK-IYVGSWDGKLY 124 (370)
T ss_pred EeeCCe--EEEecCCCcEEEEeCCCCcEE-------ecccCc----------CcceeccCceEEeCCe-EEEecccceEE
Confidence 445665 556678888888888888754 221110 0111222223333776 66677888888
Q ss_pred EEEccCCceeeEEEEeeccc-cCeeEEEecCCCCceEEEEEeCCCcEEEEEccCCceeEEeecCCc---CeEEEeeeecC
Q 001415 446 IYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKE 521 (1082)
Q Consensus 446 iwd~~~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~ 521 (1082)
.+|..+|+.+-. ..... ..+..-..-.++. +..++.++.+.-.|..+|+.+........ .+..-.. ..
T Consensus 125 ~ld~~~G~~~W~---~~~~~~~~~~~~~v~~~~~---v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~ 196 (370)
T COG1520 125 ALDASTGTLVWS---RNVGGSPYYASPPVVGDGT---VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IA 196 (370)
T ss_pred EEECCCCcEEEE---EecCCCeEEecCcEEcCcE---EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce--ee
Confidence 889888876652 22222 1122223333443 44444778888888888888766443221 1111000 11
Q ss_pred CceEEEEecC--CCcEEEEecCCCCceeeecCC----CCceEEEEEccCCCeeeecccccceeEEEecCCCCEEEEEeCC
Q 001415 522 NIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAP----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1082)
Q Consensus 522 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 595 (1082)
+ ..++.+.. ++.+.-.|..++......... ...+........+ .++ - +..+..++.+
T Consensus 197 ~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~-~v~--------------v-~~~~~~~~~~ 259 (370)
T COG1520 197 S-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG-PVY--------------V-DGGVYAGSYG 259 (370)
T ss_pred c-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCc-eEE--------------E-CCcEEEEecC
Confidence 2 24444444 444555555544443331110 0000000000000 000 0 1124566777
Q ss_pred CeEEEEECCCcceEEEEecC
Q 001415 596 FSIKFWDMDSVQLLTSIDAD 615 (1082)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~ 615 (1082)
+.+...|..+++.+..+...
T Consensus 260 g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 260 GKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CeEEEEEcCCCceEEEEecc
Confidence 88888999999998887653
No 481
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.73 E-value=1.2e+02 Score=38.20 Aligned_cols=448 Identities=10% Similarity=-0.018 Sum_probs=0.0
Q ss_pred ccccCCCCceeEEEEec--CCCeEEE-----EeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEecCCCCceEEEEEe
Q 001415 414 ALVKDPGVSVNRVIWSP--DGSLFGV-----AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486 (1082)
Q Consensus 414 ~~~~~h~~~V~~l~~sp--dg~~las-----~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s 486 (1082)
....||...|.|....- ++..|.. .+.||.+.|=|..--..+. -.|....|..+.........++|..-
T Consensus 341 ~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNyIRRI~----~dg~v~tIl~L~~t~~sh~Yy~AvsP 416 (1899)
T KOG4659|consen 341 AMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNYIRRIS----QDGQVSTILTLGLTDTSHSYYIAVSP 416 (1899)
T ss_pred eccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchheeeec----CCCceEEEEEecCCCccceeEEEecC
Q ss_pred CCCcEEEEEccCCceeEEeecCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCCCCceeeecCCCCceEEEEEccCCC
Q 001415 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1082)
Q Consensus 487 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 566 (1082)
-||++.|=|..+.+..+ |.++.-.....+.-+++|+.+..+-.=+. .+..-......-.....++|+.+|.
T Consensus 417 vdgtlyvSdp~s~qv~r--------v~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~ 487 (1899)
T KOG4659|consen 417 VDGTLYVSDPLSKQVWR--------VSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGN 487 (1899)
T ss_pred cCceEEecCCCcceEEE--------eccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEccCCc
Q ss_pred eeeecccccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEEecCCCC-------CCcCeEEEcCCCCEEEEEECC
Q 001415 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-------PASPRIRFNKDGCLLAVSTND 639 (1082)
Q Consensus 567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~s~dg~~l~~~~~d 639 (1082)
-+-.|+..+-....+|.|.-.=-.++.....+...+.. .+.+.++.+|-.+-|.+-..+
T Consensus 488 --------------lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n 553 (1899)
T KOG4659|consen 488 --------------LYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN 553 (1899)
T ss_pred --------------EEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc
Q ss_pred CcEEEEEecCCccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccc
Q 001415 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 719 (1082)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 719 (1082)
-.+++ .++++..+..+.--...+=............. .-
T Consensus 554 vvlri----------------------------------t~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~-------tl 592 (1899)
T KOG4659|consen 554 VVLRI----------------------------------TVVHRVRIILGRPTHCDLANATSSASKLADHR-------TL 592 (1899)
T ss_pred eEEEE----------------------------------ccCccEEEEcCCccccccCCCchhhhhhhhhh-------hh
Q ss_pred cceeEEEEccCCceeeecccC---CeEEEeeccccccCCCCCcccccCccccCCCCcceeecccCCCCCCCCccEEEeec
Q 001415 720 TKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 796 (1082)
Q Consensus 720 ~~i~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 796 (1082)
..-.+++++++|...++-+.. +.++.-..+. ...+-......+..++--........-......+-..+.++|.+|
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP 671 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP 671 (1899)
T ss_pred hhhhceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECC
Q ss_pred CCCeEEEeeCCe--------------EEEEecC--CCeeEEEECCCCCCeeEEEEecCCCcEEEEE---eCCCcEEEEec
Q 001415 797 NDSYVMSASGGK--------------ISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIG---MDDSSIQIYNV 857 (1082)
Q Consensus 797 dg~~l~~~sdg~--------------i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg---~~dg~v~iwd~ 857 (1082)
||..+++-..+. .+.|.+. ..+.+.+|..|......+.+-..+--+-++- +.+|.+.-.--
T Consensus 672 dg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~ 751 (1899)
T KOG4659|consen 672 DGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITD 751 (1899)
T ss_pred CCcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhh
Q ss_pred ccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEE
Q 001415 858 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 937 (1082)
Q Consensus 858 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 937 (1082)
.+|..+..++...+-+..+.--....++...+.||+++.-.... .......+.-.-..|++
T Consensus 752 a~Gn~l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~vSt~d-------------------~~~~~~ty~g~tglL~T 812 (1899)
T KOG4659|consen 752 ASGNVLRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQVSTRD-------------------ATSRDATYLGYTGLLLT 812 (1899)
T ss_pred cCCcEEEEEecCCCCcceeecCCCcEEEEEEecCCceeEeccCC-------------------Cccceeeeeccccceee
Q ss_pred --EecCeEEEEEcc
Q 001415 938 --VHETQLAIFETT 949 (1082)
Q Consensus 938 --~~d~~i~iwd~~ 949 (1082)
-..|.-.+|+.+
T Consensus 813 k~d~tg~~~~yeYD 826 (1899)
T KOG4659|consen 813 KRDDTGTAVVYEYD 826 (1899)
T ss_pred eecccceEEEEccc
No 482
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.80 E-value=5.9 Score=40.00 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=51.9
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCccccccccc-------CCCCceeEEEEecCCCeEE
Q 001415 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 364 ~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~la 436 (1082)
+.+..++.+ |.+-+.+|.+++||+.+++.+... +.+.. ++. .....|..+.++.+|.-|+
T Consensus 16 ~~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~p-----------ll~~~~~~~~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 16 SFLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIAP-----------LLNSSPVSDKSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred EEEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHHH-----------HhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence 335667886 666788999999999998877631 11111 122 4567889999998888777
Q ss_pred EEeCCCeEEEEEccCC
Q 001415 437 VAYSRHIVQIYSYHGG 452 (1082)
Q Consensus 437 s~~~d~~v~iwd~~~~ 452 (1082)
+-+ +|....|+.+-+
T Consensus 83 ~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 83 TLS-NGDSYSYSPDLG 97 (219)
T ss_pred EEe-CCCEEEeccccc
Confidence 654 477888886644
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.57 E-value=24 Score=38.98 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=92.2
Q ss_pred EEecCCCCEEEE-EeCCCeEEEEECCCcceEEEEecCCCCCCcCeEEEcCCC--------CEEEEEECCCcEEEEEecCC
Q 001415 580 VQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--------CLLAVSTNDNGIKILATSDG 650 (1082)
Q Consensus 580 ~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg--------~~l~~~~~dg~i~iwd~~~~ 650 (1082)
+..+.+...++. ++....++-.|++.|+.+..+..+.. + -+.|.|+. +.| +|-.+..|.-.|.+-.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd---v-vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~ 547 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD---V-VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRAR 547 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCc---c-eeecCCchhHHhcCccceE-EeecccceEEeccccc
Confidence 334444444444 66777888889999999999987765 2 46777753 334 3444555555554432
Q ss_pred ccceeecccccccccccccccCCCCccccCCCCceeeeccCCceeEEEecccCCCCccccccccCcccccceeEEEEccC
Q 001415 651 IRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 730 (1082)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 730 (1082)
...+...+...... --.| .........++++++..|.|++||--.... ...+|+ -...|..+..+.+
T Consensus 548 gNKi~v~esKdY~t---Kn~F---ss~~tTesGyIa~as~kGDirLyDRig~rA-----KtalP~--lG~aIk~idvta~ 614 (776)
T COG5167 548 GNKIKVVESKDYKT---KNKF---SSGMTTESGYIAAASRKGDIRLYDRIGKRA-----KTALPG--LGDAIKHIDVTAN 614 (776)
T ss_pred CCceeeeeehhccc---cccc---cccccccCceEEEecCCCceeeehhhcchh-----hhcCcc--cccceeeeEeecC
Confidence 12222222111111 1111 111244567899999999999999654322 122333 5678999999999
Q ss_pred CceeeecccCCeEEEeecccc
Q 001415 731 GNAILALASNAIHLLWKWQRT 751 (1082)
Q Consensus 731 ~~~l~~~~~d~~i~iw~~~~~ 751 (1082)
|+.+++.+.. .+.+-|+...
T Consensus 615 Gk~ilaTCk~-yllL~d~~ik 634 (776)
T COG5167 615 GKHILATCKN-YLLLTDVPIK 634 (776)
T ss_pred CcEEEEeecc-eEEEEecccc
Confidence 9988887766 5666665543
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.48 E-value=4.8 Score=38.99 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.5
Q ss_pred CceeEEEEecCC------CeEEEEeCCCeEEEEEccC
Q 001415 421 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG 451 (1082)
Q Consensus 421 ~~V~~l~~spdg------~~las~~~d~~v~iwd~~~ 451 (1082)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999943 4788889999999998764
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.20 E-value=1e+02 Score=36.14 Aligned_cols=80 Identities=9% Similarity=0.177 Sum_probs=47.1
Q ss_pred CCeEEEeeCCeEEEEecCCCeeEEEECC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeec-----cccc
Q 001415 798 DSYVMSASGGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSK 871 (1082)
Q Consensus 798 g~~l~~~sdg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~ 871 (1082)
+..++-.....|++.+...++....... ....|.+.+... .+++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 5566666677799998887777665533 344566666643 466667778899999888765532222 1457
Q ss_pred CEEEEEEeC
Q 001415 872 RITGLAFSH 880 (1082)
Q Consensus 872 ~V~~l~~s~ 880 (1082)
.|.|+..+|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788888765
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.07 E-value=90 Score=35.43 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=41.3
Q ss_pred ecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCC
Q 001415 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 354 ~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1082)
....-...+.|+|.|||+ +|++--..|.|++++-.++.......+. ......-.+....|+|+||-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~------------~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP------------EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC------------ceeccCCCCceeeEEECCCc
Confidence 334557789999999998 5666544699999986654322110000 00011136678999999984
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.89 E-value=13 Score=46.31 Aligned_cols=171 Identities=12% Similarity=0.210 Sum_probs=101.1
Q ss_pred CCCCCcceeeecCCCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCce
Q 001415 344 PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1082)
Q Consensus 344 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 423 (1082)
...+|..+....+|...-+.|-+-|.=.+..+| .|+.+.+|+++++..... +.+-...|
T Consensus 64 v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtI 122 (1311)
T KOG1900|consen 64 VVNIPDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTI 122 (1311)
T ss_pred cccCCHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhh
Confidence 345566666666666666666666665544554 689999999998655442 33344444
Q ss_pred eEEE--------EecCCCeEEEEeCCCeEEEEEccCCceee------EEEEeeccccCeeEEEecCCCCceEEEEEeCCC
Q 001415 424 NRVI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVR------QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1082)
Q Consensus 424 ~~l~--------~spdg~~las~~~d~~v~iwd~~~~~~~~------~~~~~~~h~~~V~~l~fs~dg~~~~l~s~s~d~ 489 (1082)
..+. |-|.=++|.+-+.--.|.|+-+.-.+... ....+....-.|.|+....+|+ +++ +|.||
T Consensus 123 l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg 199 (1311)
T KOG1900|consen 123 LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG 199 (1311)
T ss_pred eeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC
Confidence 4443 23344455554445556666543221110 1112233355788999888888 444 45566
Q ss_pred cEEEEEcc----CC---c-ee----------------EEee-cCCcCeEEEeeeecCCceEEEEecCCCcEEEEecCC
Q 001415 490 TIKVWDAT----NG---A-KQ----------------YIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1082)
Q Consensus 490 ~i~vwd~~----~~---~-~~----------------~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 542 (1082)
.+|.+. +| + +- -.+. .+..+|..+.+..+. ..+.+-+..|+|.+||+..
T Consensus 200 --~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 --NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred --CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 555543 11 1 11 1122 466788888875443 6888999999999999875
No 488
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=39 Score=42.74 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=29.0
Q ss_pred CCCCceEEEEecCCCeEEEEEcCCCcEEEEEccccce
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 393 (1082)
Q Consensus 357 h~~~v~~~~~spdg~~llasgs~dg~i~iwd~~~~~~ 393 (1082)
-......++|+|..+ ++|.|+..|.|.++-...-+.
T Consensus 34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence 345678899999999 799999999999998654433
No 489
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.79 E-value=80 Score=34.68 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=104.4
Q ss_pred cCCCeEEEEeCCCeEEEEEccCCceeeEEEEeeccccCeeEEEe----cCCCCceEEEEEe-CC---CcEEEEEccC-Cc
Q 001415 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCG-DD---KTIKVWDATN-GA 500 (1082)
Q Consensus 430 pdg~~las~~~d~~v~iwd~~~~~~~~~~~~~~~h~~~V~~l~f----s~dg~~~~l~s~s-~d---~~i~vwd~~~-~~ 500 (1082)
|...+++....++-+.+||++... +. .+. .+.++.+.. .-+|+..-|+.++ .+ .+|++|.+.. ..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq---~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQ---SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EE---EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EE---eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 456677777888899999998754 33 222 233333332 2245442243433 32 4699998763 12
Q ss_pred eeEEeec-------CCcCeEEEeeeecC-Cc-eEEEEecCCCcEEEEecCCCC-ceeeecCCCCceEEEEEccCCCeeee
Q 001415 501 KQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1082)
Q Consensus 501 ~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~~~~ 570 (1082)
.+..+.. ....+..+|+..++ +| -+.+....+|.+..|.+.... ..... ..|+.+..
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~--------- 206 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV--------- 206 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE----------
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC---------
Confidence 3443322 12346788876543 33 467777888999888775311 11100 11222222
Q ss_pred cccccceeEEEecCCCCEEEEEeCCCeEEEEECCC-----cceEEEEecCCCCCCcCeEEEc--CCC-CEEEE-EECCCc
Q 001415 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFN--KDG-CLLAV-STNDNG 641 (1082)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s--~dg-~~l~~-~~~dg~ 641 (1082)
...+..+..+....+|+.+-++.-|.-|+.+. ++.+.......-...+..+++- .++ .||++ .-.+++
T Consensus 207 ---~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 207 ---GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp ---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred ---CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 12455666777777899999988888887752 2223222222222345566663 343 34444 445678
Q ss_pred EEEEEecCC
Q 001415 642 IKILATSDG 650 (1082)
Q Consensus 642 i~iwd~~~~ 650 (1082)
..+|+....
T Consensus 284 f~Vy~r~~~ 292 (381)
T PF02333_consen 284 FAVYDREGP 292 (381)
T ss_dssp EEEEESSTT
T ss_pred EEEEecCCC
Confidence 999997654
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.73 E-value=28 Score=39.39 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=37.9
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCCcccccceeeeccCCCC-CCCCCCcEEEEcCCC
Q 001415 870 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQDQ 932 (1082)
Q Consensus 870 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg 932 (1082)
-...+.|+|.|||++|++--..|.|++++-.++.... ......... ........|+|+|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~--~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV--VFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee--eecCCceeccCCCCceeeEEECCCc
Confidence 3456889999999888776556999998765543211 111110000 012567899999884
No 491
>PRK13614 lipoprotein LpqB; Provisional
Probab=81.61 E-value=1.1e+02 Score=36.08 Aligned_cols=161 Identities=11% Similarity=0.132 Sum_probs=86.7
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEecccceee-eeecccccCEEEEEEeCCCCEEEEEeCCC--cEEEEEcCC-ccc
Q 001415 829 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDG-WEK 904 (1082)
Q Consensus 829 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~-~~~ 904 (1082)
.+.+.+.++ ++..+|....++. .+|-...+... ..+.+. .++.-.|.++| ++-++..+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 578899999 8888887776662 33432223222 233332 46677788877 555554433 444443221 111
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEE--ecCe--EEEEEc---cCcc--eeeeeccCCCCcceeEEEEcCCC
Q 001415 905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ--LAIFET---TKLE--CVKQWVPRESSAPITHATFSCDS 975 (1082)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~--i~iwd~---~~~~--~~~~~~~~~h~~~i~~l~~s~dg 975 (1082)
.......... .......|..+..|+||..++.. .++. |.|--+ ..|. .+.....-++...+.++.|..++
T Consensus 419 ~~~~~~~v~~-~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 419 AQAPTVTLTA-DWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccceeecc-cccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 0000000000 01111348999999999998883 4665 665433 2343 11111111234688999999999
Q ss_pred ceEEEee---cCCcEEEEecCCc
Q 001415 976 QLVYACF---LDATVCVFSAANL 995 (1082)
Q Consensus 976 ~~l~t~s---~dg~v~vwd~~~~ 995 (1082)
.+++.+. .+-.+++..+..+
T Consensus 498 sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCCCcceEEEEEeCCC
Confidence 9877654 2234566666444
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.45 E-value=41 Score=39.44 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=53.2
Q ss_pred EEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccccceeeeccCCCCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEcc
Q 001415 875 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 949 (1082)
Q Consensus 875 ~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~ 949 (1082)
.+.|-|.|..++|-+.|| .|.++.-++-...... ++... ...+..++|.-....++.+..+.+.+|...
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~-lr~~~-----dEk~~~~~wn~~s~vlav~~~n~~~lwttk 324 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFD-LRVGC-----DEKAFLENWNLLSTVLAVAEGNLLKLWTTK 324 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcc-ccCCc-----hhhhhhhhhhHHHHHHHHhhcceEEEEEcc
Confidence 378999999999987665 3666665542211100 11111 123456677777777777888899999876
Q ss_pred CcceeeeeccCCCCcceeEEEEcCC
Q 001415 950 KLECVKQWVPRESSAPITHATFSCD 974 (1082)
Q Consensus 950 ~~~~~~~~~~~~h~~~i~~l~~s~d 974 (1082)
+-....... -.-..+.-+.|.|.
T Consensus 325 NyhWYLK~e--~~ip~~s~vkwhpe 347 (1243)
T COG5290 325 NYHWYLKVE--RQIPGISYVKWHPE 347 (1243)
T ss_pred ceEEEEEEe--ecCCCcceeeeccc
Confidence 654332222 11233455566653
No 493
>PRK13615 lipoprotein LpqB; Provisional
Probab=81.14 E-value=1.2e+02 Score=35.54 Aligned_cols=154 Identities=9% Similarity=-0.014 Sum_probs=87.7
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEecccceeeeeecccccCEEEEEEeCCCCEEEEEeCCCcEEEEEcCC-cccccce
Q 001415 830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR 908 (1082)
Q Consensus 830 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~ 908 (1082)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-++..+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 78888877778878887655 22222222 2245666777777 554544433445544332 2221
Q ss_pred eeeccCCCCCCCCCCcEEEEcCCCcEEEEEe----cCeEEEEEccC-cc---ee-ee-eccCCCCcceeEEEEcCCCceE
Q 001415 909 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTK-LE---CV-KQ-WVPRESSAPITHATFSCDSQLV 978 (1082)
Q Consensus 909 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~iwd~~~-~~---~~-~~-~~~~~h~~~i~~l~~s~dg~~l 978 (1082)
.....- .....|..+..|+||..++... .++|.|--+.. +. .+ .. .........+.++.|..++.+.
T Consensus 408 ~v~v~~---~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 408 PVAVSW---TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred Eeeccc---cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 111111 1115699999999999998832 25666543322 22 12 11 1111123488999999999986
Q ss_pred EEee---cCCcEEEEecCC
Q 001415 979 YACF---LDATVCVFSAAN 994 (1082)
Q Consensus 979 ~t~s---~dg~v~vwd~~~ 994 (1082)
+.+. .+..+++..+..
T Consensus 485 Vl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEeccCCCCceEEEEECCC
Confidence 6653 234566666653
No 494
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.81 E-value=11 Score=36.55 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.0
Q ss_pred cCEEEEEEeCCC------CEEEEEeCCCcEEEEEcCC
Q 001415 871 KRITGLAFSHAL------NVLVSSGADSQLCVWSSDG 901 (1082)
Q Consensus 871 ~~V~~l~~s~d~------~~l~s~s~Dg~i~vwd~~~ 901 (1082)
..|.+++|||-| -+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 4688999999999998764
No 495
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=80.80 E-value=86 Score=33.68 Aligned_cols=209 Identities=10% Similarity=-0.022 Sum_probs=100.8
Q ss_pred CCCCccEEEeecCCCeEEEeeCCe--EEEEecCCCee---------------EEEECCCCCCeeEEEEecCCCcEEEEEe
Q 001415 785 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKT---------------MATFMPPPPAATFLAFHPQDNNIIAIGM 847 (1082)
Q Consensus 785 ~~~~i~~l~~s~dg~~l~~~sdg~--i~iwd~~~~~~---------------~~~~~~~~~~v~~l~~sp~~~~~lasg~ 847 (1082)
+...|+++...+..+.|++-++.. ++.+++..... ....-++.......+........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888765 99999853221 0111123333444444431222333444
Q ss_pred CCCcEEEEecccc----eeeeee---c-ccccCEEEEEEeCC--CCEEEEEeCCCcEEEEEcCC--cccccceeeeccCC
Q 001415 848 DDSSIQIYNVRVD----EVKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG 915 (1082)
Q Consensus 848 ~dg~v~iwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~ 915 (1082)
...+|.++..... .....+ . --..++..+..+++ ...|..|+..+...++++.. ..... ..+.....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d-~sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED-LSLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc-cccccccc
Confidence 4566777643321 111110 0 01123444443433 45677776642345555543 11000 00000000
Q ss_pred CCCCCCCCcEEEEcCCCcEEEEEecCeEEEEEccCc-ceeeeeccCCCCcceeEEEEcCCCceEEEeecCCcEEEEecCC
Q 001415 916 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 994 (1082)
Q Consensus 916 ~~~~~~~v~~~~fspdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~i~~l~~s~dg~~l~t~s~dg~v~vwd~~~ 994 (1082)
.. .....++..-+++.+|++ .|....+-|.. | +..+.... .=...+.++++. ..+|+.-+ +..|.|+++.+
T Consensus 200 ~~--~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~-G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~ 271 (302)
T smart00036 200 ET--SLKPISVVQVPRDEFLLC-YDEFGVFVNLY-GKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKT 271 (302)
T ss_pred cc--ccCceEEEEECCCeEEEE-ECcEEEEEeCC-CCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCC
Confidence 00 002233444445555544 34444444443 3 22111110 013455677776 35666554 56699999999
Q ss_pred ceeeeeeC
Q 001415 995 LKLRCRIN 1002 (1082)
Q Consensus 995 ~~~~~~~~ 1002 (1082)
+++++.+.
T Consensus 272 ~~l~q~i~ 279 (302)
T smart00036 272 GELLQELA 279 (302)
T ss_pred CceEEEEe
Confidence 99988776
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.61 E-value=51 Score=34.69 Aligned_cols=90 Identities=10% Similarity=0.186 Sum_probs=57.6
Q ss_pred cEEEEEccccceeeeeceeeeccCCCCcccccccccCCCCceeEEEEecCCCeEEEEe------CCCeEEEEEccCCcee
Q 001415 382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDEV 455 (1082)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~v~iwd~~~~~~~ 455 (1082)
.|++||..+.+-.. ...+-.+.|+++.|..+.+.++.|. ....+..||..+..-.
T Consensus 17 ~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 17 GLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 58999988766543 1334567999999997777777774 3557889999876432
Q ss_pred eEEEEeec-----cccCeeEEEecC-CCCceEEEEEe-CCC--cEEEEE
Q 001415 456 RQHLEIDA-----HVGGVNDIAFSH-PNKQLCVITCG-DDK--TIKVWD 495 (1082)
Q Consensus 456 ~~~~~~~~-----h~~~V~~l~fs~-dg~~~~l~s~s-~d~--~i~vwd 495 (1082)
.+.+ -.++|..+.+.. |+.. +.+.|. .++ .|..||
T Consensus 78 ----~~~~~~s~~ipgpv~a~~~~~~d~~~-~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 78 ----SLGGGSSNSIPGPVTALTFISNDGSN-FWVAGRSANGSTFLMKYD 121 (281)
T ss_pred ----ecCCcccccCCCcEEEEEeeccCCce-EEEeceecCCCceEEEEc
Confidence 2333 246788888743 3333 444443 333 366665
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.42 E-value=45 Score=30.18 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred CcEEEEcCCCcEEEE-EecCeEEEEEcc--------CcceeeeeccCCCCcceeEEEEcC----CCceEEEeecCCcEEE
Q 001415 923 DTRVQFHQDQIHFLV-VHETQLAIFETT--------KLECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATVCV 989 (1082)
Q Consensus 923 v~~~~fspdg~~l~~-~~d~~i~iwd~~--------~~~~~~~~~~~~h~~~i~~l~~s~----dg~~l~t~s~dg~v~v 989 (1082)
|..-.|......|++ +..++|.|++.. ....+..+.. ...|++|+-.+ +++-++..+....+..
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEeccceEEE
Q ss_pred EecCCceeeeeeCCCeecCCCCCCCCceeeEEEEeCCCCCeEEEEecCCcEEEEccCCCCCcc
Q 001415 990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1052 (1082)
Q Consensus 990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1052 (1082)
||+....-+..-. .+.| +..+.+.-......-++..+.++.|.-+|..-.|.-|
T Consensus 78 YDV~~N~d~Fyke----~~DG-----vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 78 YDVENNSDLFYKE----VPDG-----VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEcccCchhhhhh----Cccc-----eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
No 498
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.30 E-value=5.9 Score=27.27 Aligned_cols=29 Identities=7% Similarity=0.239 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCcEEEEEccccceeee
Q 001415 368 PVQQTLLLVGTNVGDIGLWEVGSRERLVL 396 (1082)
Q Consensus 368 pdg~~llasgs~dg~i~iwd~~~~~~~~~ 396 (1082)
|||++|+++...+++|.++|..+++.+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 68888788777899999999988877664
No 499
>PLN02193 nitrile-specifier protein
Probab=79.97 E-value=1.2e+02 Score=34.99 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCcEEEEEeCCC-----cEEEEeccccee--eeeecc-cccCEEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCcccc
Q 001415 839 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKG-HSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 905 (1082)
Q Consensus 839 ~~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~ 905 (1082)
++.+++.|+.++ .+..||+.+.+- +..+.. ...+-...+..-++++.+.|+.++ .+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 567777777653 588888876532 222210 111111112223567777777553 3667887774432
Q ss_pred cceeeeccCCCCCCCCCCcEEEEcCCCcEEEE-Eec----CeEEEEEccCcceeeeeccC-CCCcceeEEEEcCCCceEE
Q 001415 906 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVY 979 (1082)
Q Consensus 906 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d----~~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~dg~~l~ 979 (1082)
. +........ ...-..++ .-+++.++. +.+ ..+.+||+.+.+....-... ....+....+..-++++++
T Consensus 308 ~---~~~~~~~~~-~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 308 H---CSTPGDSFS-IRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI 382 (470)
T ss_pred e---CCCCCCCCC-CCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence 1 111111000 01111222 235666655 333 46889998877654322110 0011111122233677888
Q ss_pred EeecC--------------CcEEEEecCCceee
Q 001415 980 ACFLD--------------ATVCVFSAANLKLR 998 (1082)
Q Consensus 980 t~s~d--------------g~v~vwd~~~~~~~ 998 (1082)
.|+.+ ..+.+||..+.+-.
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 88753 24788888877654
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.95 E-value=41 Score=37.55 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.4
Q ss_pred ceeeEEEEeCCC--CCeEEEEecCCcEEEEccCCCCCccccCC
Q 001415 1016 VHPLVIAAHPQE--PNEFALGLSDGGVHVFEPLESEGKWGVPP 1056 (1082)
Q Consensus 1016 v~~~~~~~~~~d--~~~l~s~~~dg~v~vW~~~~~~~~~~~~~ 1056 (1082)
+.....+|+|+. ...|+.-+.|..|++|+.+.....|-.+.
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 556678888853 35677788899999999999886665554
Done!