Query 001415
Match_columns 1082
No_of_seqs 929 out of 4695
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 15:47:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001415.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_718-721//hhsearch_pdb/001415hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 576.1 74.2 566 352-1044 10-577 (577)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 575.7 64.7 602 352-1047 609-1249(1249)
3 1nr0_A Actin interacting prote 1.0 1 1 559.2 67.2 578 357-1046 17-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 539.4 63.7 568 415-1050 610-1210(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 536.1 68.6 540 353-993 54-610 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 525.0 68.4 526 351-991 50-577 (577)
7 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 510.4 59.8 625 352-1044 11-828 (902)
8 1pgu_A Actin interacting prote 1.0 1 1 505.3 62.1 560 356-1048 16-615 (615)
9 1pgu_A Actin interacting prote 1.0 1 1 485.7 61.8 522 350-995 55-615 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 463.4 62.5 583 416-1056 13-794 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=576.11 Aligned_cols=566 Identities=23% Similarity=0.362 Sum_probs=471.1
Q ss_pred EEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 66047899932889805898299998079919999725641356511165215778832110113698975559999029
Q 001415 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 352 ~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spd 431 (1082)
.++.+|++.|+|++|||||++ ||+|+.|+.|+|||. +++.+.+ +.+|.+.|++++||||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred EEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEEC-CCCEEEE-------------------EECCCCCEEEEEECCC
T ss_conf 398789985799999899899-999938998999979-9978999-------------------9689899899999899
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCC
Q ss_conf 98699996898199999447931347798615666744999617999069999717996999984489546994068867
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~ 511 (1082)
+++||+++.|+.|++||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........++...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEECCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEECCCCCEEECCCC-CCEEEECCCCCCC
T ss_conf 9999999698979999899-97899---9978999889999989999--89998079833520235-5200110477774
Q ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 48983110489439999648991899946889931342389971578798669973662311463069994189997999
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
+..+.+.++. ..+++++.++.+++|+... ........+...+.. +.+.|++.++++
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~---------------------~~~~~~~~~l~~ 197 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWG---------------------VAFSPDGQTIAS 197 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEE---------------------EEECTTSSCEEE
T ss_pred EEEEEEECCC--CCCEECCCCCCEECCCCCE-EEEEECCCCCCCEEE---------------------EEECCCCCEEEE
T ss_conf 3555420377--6320025553100000000-000002687763566---------------------541699778999
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 70798299998788513799705999999680898699989999978996799980389411010124433223333356
Q 001415 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
++.|+.|++|+. +++.+..+..+.. .+.+++|+|++++|++++.|+.+++|+.. + +....+.+|...+. .+.|
T Consensus 198 ~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~--~v~~ 270 (577)
T 2ymu_A 198 ASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN--GVAF 270 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE--EEEE
T ss_pred ECCCCEEEEEEC-CCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCEEEEEECC-C-CEEEEEECCCCCEE--EEEE
T ss_conf 859998999949-9968999946889--88999997999999999189989999599-9-79999806889879--9999
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCC
Q ss_conf 79982114788860121169932289820357877422223467644664037999169751443126775999630332
Q 001415 672 KNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 751 (1082)
Q Consensus 672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iw~~~~~ 751 (1082)
+++++.+++++.|+.+++|+.... ... .+. +|...|.+++|+|++..+++++.|+.+++|+....
T Consensus 271 -------~~d~~~l~~~~~d~~i~~w~~~~~----~~~--~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~ 335 (577)
T 2ymu_A 271 -------RPDGQTIASASDDKTVKLWNRNGQ----LLQ--TLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335 (577)
T ss_dssp -------CTTSSEEEEEETTSCEEEEETTSC----EEE--EEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred -------CCCCCEEEEEECCCEEEEEECCCC----EEE--EEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf -------689999999959997999948995----899--970--68897699999999999999969995999969997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 247998765555862018998620103468999998801899604998389940-9908998668980578977999980
Q 001415 752 ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA 830 (1082)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v 830 (1082)
. ... +. +|...+.+++|+|+++++++++ ++.+++|+. +++.+..+..|...|
T Consensus 336 ~----------------------~~~--~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 336 H----------------------LQT--LT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 388 (577)
T ss_dssp E----------------------EEE--EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred E----------------------EEE--EE--CCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCE
T ss_conf 2----------------------578--74--78897799999899999999969998999908-997899852788974
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEE
Q ss_conf 59999059995799974799589996203312135223555789999957999899992899499999578631123021
Q 001415 831 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 910 (1082)
Q Consensus 831 ~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 910 (1082)
++++|+| ++++|++++.|+.|++|+. +++.+..+.+|...|++++|+||+++|++++.|++|++|+... ..+
T Consensus 389 ~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------~~~ 460 (577)
T 2ymu_A 389 RGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------QLL 460 (577)
T ss_dssp EEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------CEE
T ss_pred EEEEECC-CCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC------CEE
T ss_conf 8999989-9999999949998999969-9978989628899757999989999999993999899997999------889
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 036899898899938998178849999-9368299997267621000002799965448998689966999646881999
Q 001415 911 QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 989 (1082)
Q Consensus 911 ~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~i 989 (1082)
....+|. ..+.+++|+||+++|++ +.|+.|++|+. +++++..+. +|...|++++|+|||++|++++.||.|++
T Consensus 461 ~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 461 QTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKL 534 (577)
T ss_dssp EEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEECCCC---CCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 9972789---97789999699999999919897999939-997899986--79999899999189999999989699999
Q ss_pred EECCCCEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEC
Q ss_conf 8469960346527870037888898710169997089997699995189299991
Q 001415 990 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1044 (1082)
Q Consensus 990 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~i~vW~ 1044 (1082)
||. +++++..+. +|.+. +. ++.|+| |+++|++++.|++|++||
T Consensus 535 wd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 535 WNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEC-CCCEEEEEC-------CCCCC-EE--EEEECC-CCCEEEEEECCCEEEEEC
T ss_conf 969-997898971-------88888-78--999968-999999990899999969
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=575.68 Aligned_cols=602 Identities=14% Similarity=0.155 Sum_probs=488.4
Q ss_pred EEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 66047899932889805898299998079919999725641356511165215778832110113698975559999029
Q 001415 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 352 ~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spd 431 (1082)
..+.+|.+.|++++|||||++ +++|+.||.|++||+.+++.+.. +.+|.+.|.+++|+||
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSD 668 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECC
T ss_conf 787166664899998799998-99994889499999899978887-------------------6067777899999269
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCC
Q ss_conf 98699996898199999447931347798615666744999617999069999717996999984489546994068867
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1082)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~~ 511 (1082)
+++||+++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.++.++..+.+|.+.
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCC
T ss_conf 9989998189959998779993689---9958997379999840899659999808970999989996342201277797
Q ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 48983110489439999648991899946889931342389971578798669973662311463069994189997999
Q 001415 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1082)
Q Consensus 512 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~ 591 (1082)
|.+++|++++ .++++++.|+.|++||+.+......+........... ........+.+++|+|++..+++
T Consensus 746 v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 746 VNHCRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED--------PPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----------------CCCCCBCCCCBCTTSSEEEE
T ss_pred EEEEEEECCC--CEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCC--------CCCCCCCEEEEEEECCCCCEEEE
T ss_conf 8899992599--9899997898599996888865530202321024677--------64456501799999789988999
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 70798299998788513799705999999680898699989999978996799980389411010124433223333356
Q 001415 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1082)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
++ ++.+.+|+..++.....+.. .+...+.+++|+|++.++++++.++.+++|+..++ .....+.+|...+. .+.|
T Consensus 816 ~~-~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~--~v~~ 890 (1249)
T 3sfz_A 816 AA-KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVH--GVMF 890 (1249)
T ss_dssp EE-TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEE--EEEE
T ss_pred EC-CCCEEEEEECCCCCEEEECC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CEEEECCCCCCCEE--EEEE
T ss_conf 75-89599999568972357747-87776079998278888999947986999986789-56532278766568--9999
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCC--------------------------CCC----CCCCCCCC
Q ss_conf 799821147888601211699322898203578774222--------------------------234----67644664
Q 001415 672 KNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS--------------------------LRL----PENLRATK 721 (1082)
Q Consensus 672 ~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------------------~~~----~~~~~~~~ 721 (1082)
++++..+++++.|+.+++|++........... ... ........
T Consensus 891 -------spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 891 -------SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp -------CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred -------CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCC
T ss_conf -------8999989999589728988746652010211331036897599868998137762489844765089725672
Q ss_pred EEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf 03799916975144312677599963033224799876555586201899862010346899999880189960499838
Q 001415 722 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 801 (1082)
Q Consensus 722 i~~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l 801 (1082)
+.+++|+|++..+++++.+|.+.+|++... ..... + .+|...|.+++|+|+++++
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~----------------------~~~~~-~--~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNN----------------------RVFSS-G--VGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTT----------------------SCEEE-C--CCCSSCCCCEEECSSSSCE
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEECCCC----------------------CEEEE-C--CCCCCCEEEEEECCCCCEE
T ss_conf 789999589977999869998899975787----------------------23443-0--3677716899998999989
Q ss_pred EEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEC
Q ss_conf 9940-990899866898057897799998059999059995799974799589996203312135223555789999957
Q 001415 802 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 880 (1082)
Q Consensus 802 ~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~ 880 (1082)
++++ |+.|++|++.++.... +..|...+.+++|++ ++ .+++++.||.|++||+.+++....+.+|.+.|++++|+|
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS
T ss_pred EEECCCCEEEEEECCCCCEEE-EECCCCCEEEEEECC-CC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECC
T ss_conf 998699879999879996689-852787389999908-99-589997889689988898865588746688489999989
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEEEEEECCCCCEEEEEC-
Q ss_conf 999899992899499999578631123021036899898899938998178849999-936829999726762100000-
Q 001415 881 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV- 958 (1082)
Q Consensus 881 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~- 958 (1082)
|++++++++.|++|++|++.++.. .....+|. ..+.+++|+||++++++ +.|+.|++||+.+++++..+.
T Consensus 1096 d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1096 DATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp SSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred CCCEEEEECCCCCEEEEECCCCCE-----EEEECCCC---CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf 999899984999489987898500-----12550687---7679999979999899982899799998899945788514
Q ss_pred ------CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf ------27999654489986899669996468819998469960346527870037888898710169997089997699
Q 001415 959 ------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1032 (1082)
Q Consensus 959 ------~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~ 1032 (1082)
...|...|++++|+|||++|++++ |.|++||+.+++.+..+. +|... + .++.|+| |+.+++
T Consensus 1168 ~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~-------~~~~~-i--~~~~~s~-dg~~l~ 1234 (1249)
T 3sfz_A 1168 ISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY-------TNGTN-L--KKIHVSP-DFRTYV 1234 (1249)
T ss_dssp CC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC-------CSSCC-C--CCCEECS-SSCCEE
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEE-------CCCCC-C--CEEEECC-CCCEEE
T ss_conf 444421025674289999978999899779--859998988895004640-------04775-3--2799978-987799
Q ss_pred EEECCCCEEEECCCC
Q ss_conf 995189299991478
Q 001415 1033 LGLSDGGVHVFEPLE 1047 (1082)
Q Consensus 1033 s~~~dg~i~vW~~~~ 1047 (1082)
+++.||.|++|++..
T Consensus 1235 ~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1235 TVDNLGILYILQVLE 1249 (1249)
T ss_dssp EECTTCCEEEECCCC
T ss_pred EECCCCEEEEEEECC
T ss_conf 966881799976439
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=559.25 Aligned_cols=578 Identities=13% Similarity=0.118 Sum_probs=446.8
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 89993288980589829999807991999972564135651116521577883211011369897555999902998699
Q 001415 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1082)
Q Consensus 357 h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 436 (1082)
+.+.+.+++|||||++ +++++ ++.|++|++.+++.... +.+|.+.|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCCE-EEECC-CCEEEEECCCCCCCCEE-------------------ECCCCCCEEEEEECCCCCEEE
T ss_conf 0682369766799997-99679-99799945787242737-------------------658998659999999996899
Q ss_pred EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECC----CCEEEEECCCCCEEEEEECCCCCE
Q ss_conf 9968981999994479313477986156667449996179990699997179----969999844895469940688674
Q 001415 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 512 (1082)
Q Consensus 437 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d----~~i~iWd~~~~~~~~~~~~h~~~v 512 (1082)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++ ++++++.+ +.|++|| .+.....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEECCCCEEEEECCCCCCEE-EEEECCCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCC
T ss_conf 99489978994898984156-676225578448999899999--7999989977366999963--899763254788983
Q ss_pred EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 89831104894399996489918999468899313423899715787986699736623114630699941899979997
Q 001415 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1082)
Q Consensus 513 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 592 (1082)
.+++|+|+.. ..+++++.|+.|++||.........+..|...|.+++|+|++. +++++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred EEEEECCCCC-EEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCC---------------------EEEEE
T ss_conf 6999889998-2999992898099997999757665200257169999979999---------------------89999
Q ss_pred ECCCEEEEEECCCCCEEEEEECC-----CCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCC
Q ss_conf 07982999987885137997059-----9999968089869998999997899679998038941101012443322333
Q 001415 593 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1082)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1082)
+.|+.|++||..+++.+..+... ++...|.+++|+|++++|++++.|+.|++||+.++ .....+..+..... .
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~-~ 286 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIED-Q 286 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGG-C
T ss_pred ECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CEEEEECCCCCCCC-E
T ss_conf 899919998899982866513664323566787899999799999999908980999968887-01344047887664-0
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEE
Q ss_conf 33567998211478886012116993228982035787742222346764466403799916975144312677599963
Q 001415 668 SENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 747 (1082)
Q Consensus 668 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iw~ 747 (1082)
... ...++..+++++.|+.+++|+...... .. .+ .+|...|.+++|+|+++.+++++.|+.+++|+
T Consensus 287 ~~~-------~~~~~~~l~s~s~d~~i~~~~~~~~~~---~~--~~--~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 287 QLG-------IIWTKQALVSISANGFINFVNPELGSI---DQ--VR--YGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp EEE-------EEECSSCEEEEETTCCEEEEETTTTEE---EE--EE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEE-------EEECCCEEEEEECCCCEEEEECCCCCC---CE--EE--CCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 689-------997388799995899689996889974---46--98--37888889999918999899995898499997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCEEEEE---EC
Q ss_conf 033224799876555586201899862010346899999880189960499838994099089986689805789---77
Q 001415 748 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT---FM 824 (1082)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~---~~ 824 (1082)
+... ...... ..+|...+.+++|++++.++..+.|+.+++|+......... ..
T Consensus 353 ~~~~----------------------~~~~~~--~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 353 ISTG----------------------ISNRVF--PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp TTTC----------------------CEEECS--SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred CCCC----------------------CEEEEC--CCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEE
T ss_conf 8879----------------------256321--6677650789998789969999848966895468854356521200
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 99998059999059995799974799589996203312135223555789999957999899992899499999578631
Q 001415 825 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 904 (1082)
Q Consensus 825 ~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~ 904 (1082)
.......+++++| ++..++++ .++.+++|+ .++ +..+. |...+.+++|+||+++|++++.|++|++|++.++..
T Consensus 409 ~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 409 KLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp ECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred ECCCCCCEEEEEC-CCCEEEEE-ECCEEEEEE--CCC-EEEEE-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 1489970799807-99699999-676399984--894-34640-688954999928998999968997399999459922
Q ss_pred CCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEEEEEECCC-CCEEEEECCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 123021036899898899938998178849999-9368299997267-62100000279996544899868996699964
Q 001415 905 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACF 982 (1082)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s 982 (1082)
.. ... .+|. ..|.+++|+|||++|++ +.|+.+++|++.+ +++.......+|...|.+++|+|||++|++++
T Consensus 483 ~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 483 SE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred EE---EEC-CCCC---CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf 24---101-5778---8607999989999899994899899988577872232102640466425899899899799997
Q ss_pred CCCCEEEEECCCCEEE--EEECCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf 6881999846996034--652787003788889871016999708999769999518929999147
Q 001415 983 LDATVCVFSAANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1046 (1082)
Q Consensus 983 ~dg~i~iwd~~~~~~~--~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~dg~i~vW~~~ 1046 (1082)
.|++|++|++.++... ..+. +|....+. ++.|+| |+. |++++.|++|++|+++
T Consensus 556 ~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 556 LDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCCCEEEEECCCCCCCCCHHHC-------CCCCCCEE--EEEECC-CCE-EEEECCCCCEEEEECC
T ss_conf 9972999978875556326444-------67656711--899858-997-9995288778998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=539.37 Aligned_cols=568 Identities=16% Similarity=0.210 Sum_probs=460.5
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 13698975559999029986999968981999994479313477986156667449996179990699997179969999
Q 001415 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 415 ~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iW 494 (1082)
.+.+|.+.|++++|||||++||+|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCC--EEEEEECCCEEEEE
T ss_conf 871666648999987999989999488949999989997888---7606777789999926999--89998189959998
Q ss_pred ECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCC
Q ss_conf 84489546994068867489831104894399996489918999468899313423899715787986699736623114
Q 001415 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~ 574 (1082)
|+.+++.+..+.+|...|.+++|+++.++.++++++.|+.|++||+.+......+..|...+.+++|+|++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-------- 756 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-------- 756 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCC--------
T ss_conf 779993689995899737999984089965999980897099998999634220127779788999925999--------
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC-----------CCCCCCEEEECCCCCEEEEEECCCCEE
Q ss_conf 630699941899979997079829999878851379970599-----------999968089869998999997899679
Q 001415 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1082)
Q Consensus 575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~dg~~l~~~~~dg~i~ 643 (1082)
.+++++.||.|++||+.+++....+.... ....+.+++|+|++..+++++ ++.+.
T Consensus 757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred -------------EEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEE
T ss_conf -------------8999978985999968888655302023210246776445650179999978998899975-89599
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99803894110101244332233333567998211478886012116993228982035787742222346764466403
Q 001415 644 ILATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 723 (1082)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 723 (1082)
+|+..++........++...+. .+.| ++++..+++++.++.+++|++........ +. +|...|.
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~--~~~~-------sp~~~~l~~~~~dg~v~vwd~~~~~~~~~-----~~--~h~~~v~ 886 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQ--YCDF-------SPYDHLAVIALSQYCVELWNIDSRLKVAD-----CR--GHLSWVH 886 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCC--EEEE-------CSSTTEEEEECSSSCEEEEETTTTEEEEE-----EC--CCSSCEE
T ss_pred EEEECCCCCEEEECCCCCCCEE--EEEE-------CCCCCEEEEEECCCEEEEEECCCCCEEEE-----CC--CCCCCEE
T ss_conf 9995689723577478777607--9998-------27888899994798699998678956532-----27--8766568
Q ss_pred EEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCC------------------CCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 79991697514431267759996303322479987655------------------558620189986201034689999
Q 001415 724 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA------------------SVAPQLWQPPSGIMMTNDVTDSNP 785 (1082)
Q Consensus 724 ~i~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1082)
+++|+|++..+++++.|+.+++|+.............. .....++...++..... +
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 960 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL------P 960 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE------C
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEC------C
T ss_conf 9999899998999958972898874665201021133103689759986899813776248984476508972------5
Q ss_pred CCCCCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf 98801899604998389940-99089986689805789779999805999905999579997479958999620331213
Q 001415 786 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 864 (1082)
Q Consensus 786 ~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~ 864 (1082)
...+.+++++|+++++++++ +|.|.+|++.+++....+.+|...|++++|+| +++++++++.||.|++|++.+++..
T Consensus 961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~- 1038 (1249)
T 3sfz_A 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV- 1038 (1249)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-
T ss_pred CCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCEE-
T ss_conf 67278999958997799986999889997578723443036777168999989-9998999869987999987999668-
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEE
Q ss_conf 5223555789999957999899992899499999578631123021036899898899938998178849999-936829
Q 001415 865 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 943 (1082)
Q Consensus 865 ~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i 943 (1082)
.+.+|...|.+++|++++ .+++++.|++|++|++.+++. .....+|. ..+.+++|+||++++++ +.|+.+
T Consensus 1039 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v 1109 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERDFTCHQ---GTVLSCAISSDATKFSSTSADKTA 1109 (1249)
T ss_dssp CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEEEECCS---SCCCCEEECSSSSSCEEECCSSCC
T ss_pred EEECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCE-----EEEECCCC---CCEEEEEECCCCCEEEEECCCCCE
T ss_conf 985278738999990899-589997889689988898865-----58874668---848999998999989998499948
Q ss_pred EEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEECC--CCCCCCCCEEEEE
Q ss_conf 99972676210000027999654489986899669996468819998469960346527870037--8888987101699
Q 001415 944 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP--AGVSSSNVHPLVI 1021 (1082)
Q Consensus 944 ~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~gh~~~~v~~~~~ 1021 (1082)
++||+.+++++..+. +|...|++++|+|||++|++++.||.|++||+.+++.+..+.+..... .+|. ..+.++
T Consensus 1110 ~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l 1184 (1249)
T 3sfz_A 1110 KIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG---GWVTDV 1184 (1249)
T ss_dssp CEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CC---SCCCEE
T ss_pred EEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCC---CEEEEE
T ss_conf 998789850012550--687767999997999989998289979999889994578851444442102567---428999
Q ss_pred EEECCCCCEEEEEECCCCEEEECCCCCCC
Q ss_conf 97089997699995189299991478877
Q 001415 1022 AAHPQEPNEFALGLSDGGVHVFEPLESEG 1050 (1082)
Q Consensus 1022 ~~~~~d~~~l~s~~~dg~i~vW~~~~~~~ 1050 (1082)
.|+| |+.++++++ |.|++|++.+++.
T Consensus 1185 ~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1185 CFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred EECC-CCCEEEECC--CEEEEEECCCCCE
T ss_conf 9978-999899779--8599989888950
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=536.14 Aligned_cols=540 Identities=14% Similarity=0.185 Sum_probs=428.8
Q ss_pred EECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 60478999328898058982999980799199997256413565111652157788321101136989755599990299
Q 001415 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1082)
Q Consensus 353 ~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spdg 432 (1082)
.+.+|.+.|++++|||||+ ++|+|+.|++|+|||+.+++..... .+.+|.+.|.+++|+||+
T Consensus 54 ~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSES 115 (611)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTS
T ss_pred EECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEEE-----------------EECCCCCCEEEEEECCCC
T ss_conf 7658998659999999996-8999948997899489898415667-----------------622557844899989999
Q ss_pred CEEEEEECC----CEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECC
Q ss_conf 869999689----8199999447931347798615666744999617999069999717996999984489546994068
Q 001415 433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1082)
Q Consensus 433 ~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h 508 (1082)
++||+++.+ +.|++|| .+.... .+.+|...|.+++|+|++.. .+++++.|++|++||..+++++..+.+|
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H 189 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEH 189 (611)
T ss_dssp CEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred CEEEEEECCCCCEEEEEEEE--CCCCCC---EECCCCCCCEEEEECCCCCE-EEEEEECCCEEEEEECCCCEEEEEECCC
T ss_conf 97999989977366999963--899763---25478898369998899982-9999928980999979997576652002
Q ss_pred CCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEC-------CCCCCEEEEEECCCCCEEEECCCCCCEEEEE
Q ss_conf 867489831104894399996489918999468899313423-------8997157879866997366231146306999
Q 001415 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1082)
Q Consensus 509 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~ 581 (1082)
...|.+++|+|+ +.++++++.|+.|++||+.++.....+. .|...| ..++
T Consensus 190 ~~~V~~v~fspd--g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V---------------------~~v~ 246 (611)
T 1nr0_A 190 TKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV---------------------FGLT 246 (611)
T ss_dssp SSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE---------------------EEEE
T ss_pred CCCEEEEEECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCE---------------------EEEE
T ss_conf 571699999799--99899998999199988999828665136643235667878---------------------9999
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCC
Q ss_conf 4189997999707982999987885137997059999-996808986999899999789967999803894110101244
Q 001415 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1082)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1082)
|+|++.++++++.|+.|++||+.+++++..+...... .....+.| ++..+++++.|+.+++|+...+ .....+.+|
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh 323 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGH 323 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCC-CCCEEECCC
T ss_conf 9799999999908980999968887013440478876640689997--3887999958996899968899-744698378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCC
Q ss_conf 33223333356799821147888601211699322898203578774222234676446640379991697514431267
Q 001415 661 AYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 740 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 740 (1082)
...+. .++| +|+++.+++++.|+.+++|++....... .....|...+.+++|++++ .+++++.|
T Consensus 324 ~~~v~--~l~~-------spdg~~l~s~s~D~~v~~Wd~~~~~~~~------~~~~~h~~~v~~~~~s~~~-~l~s~s~d 387 (611)
T 1nr0_A 324 NKAIT--ALSS-------SADGKTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTSKG-DLFTVSWD 387 (611)
T ss_dssp SSCEE--EEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECTTS-CEEEEETT
T ss_pred CCCEE--EEEE-------ECCCCEEEEEECCCCEEEEECCCCCEEE------ECCCCCCCEEEEEEECCCC-CEEEEECC
T ss_conf 88889--9999-------1899989999589849999788792563------2166776507899987899-69999848
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCEEE
Q ss_conf 75999630332247998765555862018998620103468999998801899604998389940990899866898057
Q 001415 741 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 820 (1082)
Q Consensus 741 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~sdg~i~iwd~~~~~~~ 820 (1082)
+.+++|+.......... ..... ......+++++|+++.++++.++.+++|+. ++ .
T Consensus 388 ~~v~~w~~~~~~~~~~~-----------------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~--~~-~ 442 (611)
T 1nr0_A 388 DHLKVVPAGGSGVDSSK-----------------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYSH--GK-L 442 (611)
T ss_dssp TEEEEECSSSSSSCTTS-----------------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEET--TE-E
T ss_pred CCEEEEECCCCCCCCCC-----------------EEEEE-----CCCCCCEEEEECCCCEEEEEECCEEEEEEC--CC-E
T ss_conf 96689546885435652-----------------12001-----489970799807996999996763999848--94-3
Q ss_pred EEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEE--EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 897799998059999059995799974799589996203312--135223555789999957999899992899499999
Q 001415 821 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 898 (1082)
Q Consensus 821 ~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd 898 (1082)
..+. +...+.+++|+| ++++||+|+.|+.|++|++.++.. ... .+|...|++++|+||+++|++++.|++|++|+
T Consensus 443 ~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 443 TEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEE-CCCCCEEEEEEC-CCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 4640-688954999928-99899996899739999945992224101-57788607999989999899994899899988
Q ss_pred CCC-CCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEEEEEECCCCCEEEEECCCCC-CCCEEEEEECCCC
Q ss_conf 578-631123021036899898899938998178849999-9368299997267621000002799-9654489986899
Q 001415 899 SDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDS 975 (1082)
Q Consensus 899 ~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-~~~i~~i~~s~dg 975 (1082)
+.+ ++.... ....+|. ..|.+++|+|||++|++ +.|+.|++|++.++.........+| ...|.+++|+||+
T Consensus 520 ~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~ 593 (611)
T 1nr0_A 520 VANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 593 (611)
T ss_dssp GGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT
T ss_pred CCCCCCEEEE---EEEEECC---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCC
T ss_conf 5778722321---0264046---642589989989979999799729999788755563264446765671189985899
Q ss_pred CEEEEEECCCCEEEEECC
Q ss_conf 669996468819998469
Q 001415 976 QLVYACFLDATVCVFSAA 993 (1082)
Q Consensus 976 ~~l~t~s~dg~i~iwd~~ 993 (1082)
+ |++++.|++|++|++.
T Consensus 594 ~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 594 T-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp E-EEEEETTSCEEEEECC
T ss_pred E-EEEECCCCCEEEEECC
T ss_conf 7-9995288778998444
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=525.04 Aligned_cols=526 Identities=22% Similarity=0.360 Sum_probs=431.0
Q ss_pred EEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 46604789993288980589829999807991999972564135651116521577883211011369897555999902
Q 001415 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1082)
Q Consensus 351 ~~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~sp 430 (1082)
+..+.+|.+.|++++|||||+ +|++++.|++|+|||. +++.+.. +.+|...|.+++|+|
T Consensus 50 ~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~-------------------~~~~~~~v~~~~~s~ 108 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVRGVAFSP 108 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEEE-------------------EECCCCCEEEEEECC
T ss_conf 999968989989999989999-9999969897999989-9978999-------------------978999889999989
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf 99869999689819999944793134779861566674499961799906999971799699998448954699406886
Q 001415 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1082)
Q Consensus 431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~h~~ 510 (1082)
|+++|++++.|+.+++|+....... ...+|...+.++.|+|++. .+++++.++.+++|+. ..........|..
T Consensus 109 d~~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 181 (577)
T 2ymu_A 109 DGQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSS 181 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred CCCEEEEECCCCCEEECCCCCCEEE----ECCCCCCCEEEEEEECCCC--CCEECCCCCCEECCCC-CEEEEEECCCCCC
T ss_conf 9998999807983352023552001----1047777435554203776--3200255531000000-0000000268776
Q ss_pred CEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf 74898311048943999964899189994688993134238997157879866997366231146306999418999799
Q 001415 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1082)
Q Consensus 511 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~~~~~~~~~~i~~~~~~~~~~~l~ 590 (1082)
.+.++.+.++ +.++++++.|+.|++|+.. ......+..+...+.+++|+|++ ..++
T Consensus 182 ~v~~~~~~~~--~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg---------------------~~l~ 237 (577)
T 2ymu_A 182 SVWGVAFSPD--GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG---------------------QTIA 237 (577)
T ss_dssp CEEEEEECTT--SSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTS---------------------SCEE
T ss_pred CEEEEEECCC--CCEEEEECCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCC---------------------CEEE
T ss_conf 3566541699--7789998599989999499-96899994688988999997999---------------------9999
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 97079829999878851379970599999968089869998999997899679998038941101012443322333335
Q 001415 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1082)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1082)
+++.|+.|++|+. +++.+..+..+.. .+.+++|+|+++.+++++.|+.+++|+... .....+.+|...+. .++
T Consensus 238 ~~~~d~~i~~w~~-~~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~--~~~ 310 (577)
T 2ymu_A 238 SASDDKTVKLWNR-NGQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW--GVA 310 (577)
T ss_dssp EEETTSCEEEECT-TSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE--EEE
T ss_pred EEECCCEEEEEEC-CCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCEEEEEECCC--CEEEEEECCCCCEE--EEE
T ss_conf 9918998999959-9979999806889--879999968999999995999799994899--58999706889769--999
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCC
Q ss_conf 67998211478886012116993228982035787742222346764466403799916975144312677599963033
Q 001415 671 SKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 750 (1082)
Q Consensus 671 ~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iw~~~~ 750 (1082)
| +|+++.+++++.|+.+++|+.... .... +. .|...+.+++|+|+++.+++++.++.+++|+...
T Consensus 311 ~-------~~~~~~l~t~~~d~~i~~w~~~~~----~~~~--~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 311 F-------SPDGQTIASASDDKTVKLWNRNGQ----HLQT--LT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp E-------CTTSSEEEEEETTSCEEEEETTSC----EEEE--EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred E-------CCCCCEEEEEECCCEEEEEECCCC----EEEE--EE--CCCCCEEEEEECCCCCEEEEEECCCEEEEECCCC
T ss_conf 9-------999999999969995999969997----2578--74--7889779999989999999996999899990899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCC
Q ss_conf 2247998765555862018998620103468999998801899604998389940-990899866898057897799998
Q 001415 751 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 829 (1082)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~ 829 (1082)
..... +. +|...|.+++|+||++++++++ |+.|++|+. +++....+.+|...
T Consensus 376 -----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~ 428 (577)
T 2ymu_A 376 -----------------------QLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 428 (577)
T ss_dssp -----------------------CEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC
T ss_pred -----------------------CEEEE-EC--CCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCC
T ss_conf -----------------------78998-52--78897489999899999999949998999969-99789896288997
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEE
Q ss_conf 05999905999579997479958999620331213522355578999995799989999289949999957863112302
Q 001415 830 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF 909 (1082)
Q Consensus 830 v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 909 (1082)
+++++|+| ++++|++++.|+.|++|+. +++.+..+.+|...|++++|+||+++|++++.|++|++|+... +.
T Consensus 429 v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------~~ 500 (577)
T 2ymu_A 429 VWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QL 500 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS------CE
T ss_pred EEEEEECC-CCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCC------CE
T ss_conf 57999989-9999999939998999979-9988999727899778999969999999991989799993999------78
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 1036899898899938998178849999-936829999726762100000279996544899868996699964688199
Q 001415 910 LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 988 (1082)
Q Consensus 910 ~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~ 988 (1082)
.....+|. ..|.+++|+||+++|++ +.|+.|++||. +++++..+. +|...|++++|+|||++|++++.|++|+
T Consensus 501 ~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 501 LQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp EEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred EEEEECCC---CCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 99986799---99899999189999999989699999969-997898971--8888878999968999999990899999
Q ss_pred EEE
Q ss_conf 984
Q 001415 989 VFS 991 (1082)
Q Consensus 989 iwd 991 (1082)
+||
T Consensus 575 ~Wd 577 (577)
T 2ymu_A 575 LWN 577 (577)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 969
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=510.41 Aligned_cols=625 Identities=9% Similarity=0.076 Sum_probs=433.6
Q ss_pred EEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 66047899932889805898299998079919999725641356511165215778832110113698975559999029
Q 001415 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1082)
Q Consensus 352 ~~~~~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~i~~spd 431 (1082)
....+|.+.|++++|+|+|+ +||+|+.||.|+||+..+.+... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred CCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEE--------------------ECCCCCCEEEEEECC-
T ss_conf 02168899848999979999-89999297989999689947999--------------------868999779999908-
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE---------
Q ss_conf 98699996898199999447931347798615666744999617999069999717996999984489546---------
Q 001415 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 502 (1082)
Q Consensus 432 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd~~~~~~~--------- 502 (1082)
|++|++++.|+.|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+.++.+.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 9889999895959999899996899---974-899879999879999--8999949992999999999626503043210
Q ss_pred --EEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCC--EEEECCCCCCEE
Q ss_conf --9940688674898311048943999964899189994688993134238997157879866997--366231146306
Q 001415 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 578 (1082)
Q Consensus 503 --~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~d~~--~~~~~~~~~~i~ 578 (1082)
..+.+|.++|.+++|+|.. +..+++++.|+.| +||++.......+..+...- .+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCEE
T ss_pred CCCCCCCCCCCEEEEEECCCC-CCEEEEEECCCCE-EEECCCCCEEEEEECCCCCC-----CCCCCCCCCCCCCCCCCEE
T ss_conf 002544578973899976699-9989999189849-99877896579983355776-----7776544332345677768
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-----CC-----------CCCCCCEEEEC----CCC-CEEEEEE
Q ss_conf 999418999799970798299998788513799705-----99-----------99996808986----999-8999997
Q 001415 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-----DG-----------GLPASPRIRFN----KDG-CLLAVST 637 (1082)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~-----------~~~~i~~~~~s----~dg-~~l~~~~ 637 (1082)
+++|+|++.++++++.|+.|++||+.+++++..... +. +...|.+++|+ |++ .++++++
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
T ss_conf 99985999999999899939999878996888885012345787776788885556774579997349998878999688
Q ss_pred CC-----CCEEEEEECCC-C----------------CCEEECC-CCCCCCCCCCCCCCC---CCCCCCCCCCCEEEECCC
Q ss_conf 89-----96799980389-4----------------1101012-443322333335679---982114788860121169
Q 001415 638 ND-----NGIKILATSDG-I----------------RLLRTFE-NLAYDASRTSENSKN---GDVRSLADVKPRITEESN 691 (1082)
Q Consensus 638 ~d-----g~i~iwd~~~~-~----------------~~~~~~~-~~~~~~~~~~~~~~~---~~~~~s~~~~~l~~~~~d 691 (1082)
.+ ..+.+|+.... . .....+. .+...+. .+.+.. .......+...+++++.|
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--NILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--EEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEE--EEEECCCCCCCCCCCCCCEEEEEECCC
T ss_conf 777788852899954789875554255654664174522787418999547--999977889886778785069999179
Q ss_pred CCEEEEEECCCCCCCCC----CC------------------------------CCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf 93228982035787742----22------------------------------234676446640379991697514431
Q 001415 692 DKSKVWKLTELSEPNQC----RS------------------------------LRLPENLRATKISRLIFTNSGNAILAL 737 (1082)
Q Consensus 692 ~~i~iw~~~~~~~~~~~----~~------------------------------~~~~~~~~~~~i~~i~~s~~~~~l~~~ 737 (1082)
+.+++|++..+...... .. ...+..+|...+..++|+|+++.++++
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg 453 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG 453 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 84899978999855655568985223589724899997499999888860469997545785778753336667589996
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEEEEEECCC
Q ss_conf 26775999630332247998765555862018998620103468999998801899604998389940-99089986689
Q 001415 738 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 816 (1082)
Q Consensus 738 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i~iwd~~~ 816 (1082)
+.|+.|++||+........ ..+... ... ....+|...|.+++|+||+++||+++ |++|++|++.+
T Consensus 454 s~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 454 HSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp ETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCCC---------CEEEEE----CHH-HCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
T ss_conf 5898389997877645677---------367750----154-13778887646999638999699994585799999248
Q ss_pred C---------------------------------------------EEEEEECCCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 8---------------------------------------------0578977999980599990599957999747995
Q 001415 817 F---------------------------------------------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 851 (1082)
Q Consensus 817 ~---------------------------------------------~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~ 851 (1082)
+ +++..+.+|.+.|++++|+| +| +||+|+.|++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~t 597 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGS 597 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC-CC-EEEEEECCCC
T ss_conf 655575455778665113455134679654322423689887776014699986888677999648-76-8999958976
Q ss_pred EEEEECCCCEEEE-----EEC-CCCCCEEEEEEE-----CCC---CEEEEEECCCCEEEEEC---CCCCCCCCEEEECCC
Q ss_conf 8999620331213-----522-355578999995-----799---98999928994999995---786311230210368
Q 001415 852 IQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLCVWSS---DGWEKQKNRFLQIPT 914 (1082)
Q Consensus 852 I~iwd~~~~~~~~-----~l~-~h~~~V~~i~~s-----~d~---~~l~s~s~Dg~I~iwd~---~~~~~~~~~~~~~~~ 914 (1082)
|++||+.+...+. .+. +|.+.|++++|+ ||| ++|++++.|++|++|++ .+++.. ..+.
T Consensus 598 v~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~ 672 (902)
T 2oaj_A 598 LMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD-----VQLM 672 (902)
T ss_dssp EEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE-----EEEE
T ss_pred EEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEE-----EEEC
T ss_conf 99998889839997024672646666139999999841789876338999956873999999558998689-----9966
Q ss_pred CCCC--CCCCCCEEE-EC----------------------CCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCCCEEEE
Q ss_conf 9989--889993899-81----------------------7884999993682999972676210000027999654489
Q 001415 915 GRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHA 969 (1082)
Q Consensus 915 ~~~~--~~~~v~~i~-fs----------------------pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~i~~i 969 (1082)
++.. ....|..++ |+ +++..|+ +.+..+++|++.++++..+.. .|...+.++
T Consensus 673 ~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~-~~~~~ir~~~~~~~k~~~k~~--~~~~~~~~v 749 (902)
T 2oaj_A 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI-TGFDDIRLITLGKSKSTHKGF--KYPLAATGL 749 (902)
T ss_dssp EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE-ECSSEEEEECTTCCCEEEEEC--SSCEEEEEE
T ss_pred CCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEE-EECCCEEEEECCCCCCEEEEC--CCCEEEEEE
T ss_conf 72440788964799858668797366887897255778877739999-935405999675335123672--562014477
Q ss_pred ---E------ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEECC--C
Q ss_conf ---9------8689966999646881999846996034652787003788889871016999708999769999518--9
Q 001415 970 ---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD--G 1038 (1082)
Q Consensus 970 ---~------~s~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~~d--g 1038 (1082)
. |++++..|++.+.||.|++|++.+++++..+...... +.-......|.+ .|+.++-.+.. .
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~------~~~~~~~~~~~~-~G~~~~~~~~~e~~ 822 (902)
T 2oaj_A 750 SYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI------AAKYITESSVLR-NGDIAIRVSEFQAS 822 (902)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC------CHHHHTTCEECT-TSCEEEECSSSEEE
T ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCCCC------CCCCCCCEEECC-CCCEEEEECHHHEE
T ss_conf 78870135554467369999927995999978564778416588602------446432028968-98899982702648
Q ss_pred CEEEEC
Q ss_conf 299991
Q 001415 1039 GVHVFE 1044 (1082)
Q Consensus 1039 ~i~vW~ 1044 (1082)
.+.+|.
T Consensus 823 ~~~~~~ 828 (902)
T 2oaj_A 823 LFSTVK 828 (902)
T ss_dssp EEEEES
T ss_pred EEEEEC
T ss_conf 999974
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=505.31 Aligned_cols=560 Identities=12% Similarity=0.143 Sum_probs=454.2
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCC----CEEEEECEEEECCCCCCCCCCCCCCCCCCCC-EEEEEEEC
Q ss_conf 789993288980589829999807991999972564----1356511165215778832110113698975-55999902
Q 001415 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 430 (1082)
Q Consensus 356 ~h~~~v~~~~fspdg~~llasgs~dg~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~i~~sp 430 (1082)
.|.+.|++++|||||++ +++++ ++.|.+|++.++ +.... +.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECS
T ss_pred CCCCCEEEEEECCCCCE-EEEEC-CCEEEEEECCCCCCCCCCCEE-------------------EECCCCCEEEEEEECC
T ss_conf 76585368998899997-99935-984999977788776514318-------------------8057884499999796
Q ss_pred --CCCEEEEEECCCEEEEEECCCCC-----EEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECC----CCEEEEECCCC
Q ss_conf --99869999689819999944793-----13477986156667449996179990699997179----96999984489
Q 001415 431 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 499 (1082)
Q Consensus 431 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d----~~i~iWd~~~~ 499 (1082)
|+++||+++.|+.|++|++.++. .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE--CC
T ss_conf 7899889996489879997688876554455420001112566379999907999--8999316877755799997--89
Q ss_pred CEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCC---CEEEEEECCCCCEEEECCCCCC
Q ss_conf 5469940688674898311048943999964899189994688993134238997---1578798669973662311463
Q 001415 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRS 576 (1082)
Q Consensus 500 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~d~~~~~~~~~~~~ 576 (1082)
+.+..+.+|...|.+++|+++.. ..+++++.|+.|++||+........+..+.. .+.+++|+|+.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 218 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS----------- 218 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----------
T ss_pred CCCEEEECCCCCEEEEEECCCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCC-----------
T ss_conf 81031306774388999887899-689999579959999699961013202567777428999978977-----------
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-E---CCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 069994189997999707982999987885137997-0---599999968089869998999997899679998038941
Q 001415 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1082)
Q Consensus 577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~~~i~~~~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 652 (1082)
++++++++.|+.|++||+.+++.+..+ . .+. ..+.+++|+ ++.++++++.|+.+++|+..++ .
T Consensus 219 ---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~ 285 (615)
T 1pgu_A 219 ---------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ--GGIFALSWL-DSQKFATVGADATIRVWDVTTS-K 285 (615)
T ss_dssp ---------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC--SCEEEEEES-SSSEEEEEETTSEEEEEETTTT-E
T ss_pred ---------CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCC--CCEEEEEEC-CCCEEEEECCCCCEEEEECCCC-C
T ss_conf ---------88899986898089998999978589525444567--755899981-8997999848994899978889-2
Q ss_pred CEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 1010124433223--33335679982114788860121169932289820357877422223467644664037999169
Q 001415 653 LLRTFENLAYDAS--RTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 730 (1082)
Q Consensus 653 ~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 730 (1082)
....+..+..... ...+. .+++..+++++.++.+++|++....... .+. .|...|.+++| |+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~g~i~~~d~~~~~~~~-----~~~--~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVV--------ATGNGRIISLSLDGTLNFYELGHDEVLK-----TIS--GHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEE--------EEETTEEEEEETTSCEEEEETTEEEEEE-----EEC--CCSSCEEEEET-TT
T ss_pred EEEEECCCCCCCCCCEEEEE--------ECCCCEEEEEECCCCEEEEECCCCCEEE-----EEE--CCCCCEEEEEE-CC
T ss_conf 78788478775457146999--------1899769999789978999888992889-----994--77787899995-67
Q ss_pred CCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE-CCEE
Q ss_conf 751443126775999630332247998765555862018998620103468999998801899604998389940-9908
Q 001415 731 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 809 (1082)
Q Consensus 731 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s-dg~i 809 (1082)
+++++.|+.+++|++. .+. ..|...+.+++| +++..+++++ ++.+
T Consensus 350 ---l~~~~~dg~i~~w~~~-------------------------~~~-----~~~~~~v~~~~~-~~~~~l~~~~~d~~i 395 (615)
T 1pgu_A 350 ---LISGSYDGRIMEWSSS-------------------------SMH-----QDHSNLIVSLDN-SKAQEYSSISWDDTL 395 (615)
T ss_dssp ---TEEEETTSCEEETTTT-------------------------EEE-----CCCCSCEEEEEC-CSTTCCEEEETTTEE
T ss_pred ---CEEECCCCEEEEEECH-------------------------HHC-----CCCCCCEEEEEE-CCCCEEEEEECCCCE
T ss_conf ---4898799959998752-------------------------415-----755685179997-898679999589979
Q ss_pred EEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 99866898057897799998059999059995799974799589996203312135223555789999957999899992
Q 001415 810 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 889 (1082)
Q Consensus 810 ~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~d~~~l~s~s 889 (1082)
++|++.+.+... .+.+++++| ++.+++++ .++.+.+|+..+++.+..+. |...+.+++|+ +++|++++
T Consensus 396 ~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~ 463 (615)
T 1pgu_A 396 KVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGL 463 (615)
T ss_dssp EETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEE
T ss_pred EEEECCCCCCCC-------CCEEEEECC-CCCEEEEE-CCCCEEEEECCCCCEEEECC-CCCCCEEEEEC--CCEEEEEE
T ss_conf 998866676367-------846999828-98789996-79826999446786655515-67872077883--88899965
Q ss_pred C-CCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EECCEEEEEECCCCCEEEEECCCC-CCCCE
Q ss_conf 8-99499999578631123021036899898899938998178849999-936829999726762100000279-99654
Q 001415 890 A-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRE-SSAPI 966 (1082)
Q Consensus 890 ~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-h~~~i 966 (1082)
. |+.|++|++.+++... ....+|. ..+.+++|+|++++|++ +.|+.+++|++.+++++..+. + |...|
T Consensus 464 ~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v 534 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKI 534 (615)
T ss_dssp TTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCE
T ss_pred CCCCEEEEEECCCCCCCC----CCCCCCC---CCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEE--CCCCCCE
T ss_conf 689869999888854353----3367765---750799998999989981799859986577776246760--4788714
Q ss_pred EEEEECC----------CCCEEEEEECCCCEEEEECCCC-EEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 4899868----------9966999646881999846996-0346527870037888898710169997089997699995
Q 001415 967 THATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1035 (1082)
Q Consensus 967 ~~i~~s~----------dg~~l~t~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~~~~~~~d~~~l~s~~ 1035 (1082)
++++|+| ++++|++++.||.|++|++.++ +++..+. +|.. .+.++.|+| |+. |++++
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~h~~---~v~~l~~s~-~~~-l~s~~ 602 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-------AHKD---GVNNLLWET-PST-LVSSG 602 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-------SSTT---CEEEEEEEE-TTE-EEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHH-------CCCC---CEEEEEECC-CCC-EEEEC
T ss_conf 69997683234533246888899981797199997788854031133-------5943---058999738-997-28845
Q ss_pred CCCCEEEECCCCC
Q ss_conf 1892999914788
Q 001415 1036 SDGGVHVFEPLES 1048 (1082)
Q Consensus 1036 ~dg~i~vW~~~~~ 1048 (1082)
.||.|++|++..+
T Consensus 603 ~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 603 ADACIKRWNVVLE 615 (615)
T ss_dssp TTSCEEEEEEC--
T ss_pred CCCEEEEEEEECC
T ss_conf 9963999960159
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=485.67 Aligned_cols=522 Identities=12% Similarity=0.153 Sum_probs=437.6
Q ss_pred CEEEECCCCCC-CEEEEEEC--CCCEEEEEECCCCCEEEEECCCC--------CEEEEECEEEECCCCCCCCCCCCCCCC
Q ss_conf 44660478999-32889805--89829999807991999972564--------135651116521577883211011369
Q 001415 350 TVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR--------ERLVLRNFKVWDLGACSMPLQAALVKD 418 (1082)
Q Consensus 350 ~~~~~~~h~~~-v~~~~fsp--dg~~llasgs~dg~i~iwd~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~ 418 (1082)
....+.+|.+. |++++|+| +++ ++++|+.||.|++||+.++ .... .+..
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-------------------~~~~ 114 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKS-------------------EFQV 114 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEE-------------------EEEC
T ss_pred CCEEEECCCCCEEEEEEECCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCCCCCCC-------------------HHHC
T ss_conf 4318805788449999979678998-8999648987999768887655445542000-------------------1112
Q ss_pred CCCCEEEEEEECCCCEEEEEECC----CEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 89755599990299869999689----81999994479313477986156667449996179990699997179969999
Q 001415 419 PGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1082)
Q Consensus 419 h~~~V~~i~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iW 494 (1082)
|...|.+++|+|++++|++++.+ +.|.+|+ .++.+. .+.+|...|.+++|+|++.. ++++++.|+.|++|
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vw 188 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFY 188 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCE---EEECCCCCEEEEEECCCCCC-EEEEEECCCCEEEE
T ss_conf 5663799999079998999316877755799997--898103---13067743889998878996-89999579959999
Q ss_pred ECCCCCEEEEEECCCC---CEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEE-C---CCCCCEEEEEECCCCCE
Q ss_conf 8448954699406886---748983110489439999648991899946889931342-3---89971578798669973
Q 001415 495 DATNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTR 567 (1082)
Q Consensus 495 d~~~~~~~~~~~~h~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~d~~~ 567 (1082)
|+.+++.+..+.+|.. .|.+++|+++. +.++++++.|+.|++||+.+......+ . .+...+.++.|+ ++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-- 264 (615)
T 1pgu_A 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-- 264 (615)
T ss_dssp ETTTBEEEEEECSSSCTTCCEEEEEECSTT-CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS--
T ss_pred ECCCCCEEEEECCCCCCCCEEEEEEECCCC-CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CC--
T ss_conf 699961013202567777428999978977-88899986898089998999978589525444567755899981-89--
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--CCCCCEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 66231146306999418999799970798299998788513799705999--9996808986999899999789967999
Q 001415 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1082)
Q Consensus 568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~dg~i~iw 645 (1082)
.++++++.|+.|++||+.+++.+..+..+.. ...+.++.+. ++.++++++.++.+++|
T Consensus 265 -------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 265 -------------------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp -------------------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred -------------------CEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEE
T ss_conf -------------------9799984899489997888927878847877545714699918-99769999789978999
Q ss_pred EECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 80389411010124433223333356799821147888601211699322898203578774222234676446640379
Q 001415 646 ATSDGIRLLRTFENLAYDASRTSENSKNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 725 (1082)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~i 725 (1082)
+..++ .....+.+|...+. .+.| ++ +++++.|+.+++|++.. +. ..|...|.++
T Consensus 325 d~~~~-~~~~~~~~~~~~v~--~~~~--------~~---l~~~~~dg~i~~w~~~~---------~~---~~~~~~v~~~ 378 (615)
T 1pgu_A 325 ELGHD-EVLKTISGHNKGIT--ALTV--------NP---LISGSYDGRIMEWSSSS---------MH---QDHSNLIVSL 378 (615)
T ss_dssp ETTEE-EEEEEECCCSSCEE--EEET--------TT---TEEEETTSCEEETTTTE---------EE---CCCCSCEEEE
T ss_pred ECCCC-CEEEEEECCCCCEE--EEEE--------CC---CEEECCCCEEEEEECHH---------HC---CCCCCCEEEE
T ss_conf 88899-28899947778789--9995--------67---48987999599987524---------15---7556851799
Q ss_pred EECCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 99169751443126775999630332247998765555862018998620103468999998801899604998389940
Q 001415 726 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 805 (1082)
Q Consensus 726 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~~s 805 (1082)
+| +++..+++++.++.+++|++..... ...+.+++++|++.+++++.
T Consensus 379 ~~-~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------------~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 379 DN-SKAQEYSSISWDDTLKVNGITKHEF--------------------------------GSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp EC-CSTTCCEEEETTTEEEETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEET
T ss_pred EE-CCCCEEEEEECCCCEEEEECCCCCC--------------------------------CCCCEEEEECCCCCEEEEEC
T ss_conf 97-8986799995899799988666763--------------------------------67846999828987899967
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEC-CCCEEEEECCCCEEE-EEECCCCCCEEEEEEECCCC
Q ss_conf 9908998668980578977999980599990599957999747-995899962033121-35223555789999957999
Q 001415 806 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALN 883 (1082)
Q Consensus 806 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~sp~~~~~lasg~~-dg~I~iwd~~~~~~~-~~l~~h~~~V~~i~~s~d~~ 883 (1082)
++.+.+|+..+++.+..+. +...+.+++|+ +.++++++. |+.|++|++.+++.. ..+.+|...|++++|+|+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 501 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 501 (615)
T ss_dssp TSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred CCCEEEEECCCCCEEEECC-CCCCCEEEEEC---CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 9826999446786655515-67872077883---8889996568986999988885435333677657507999989999
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCEEEECCCC-CCCCCCCCCEEEECC----------CCCEEEE-EECCEEEEEECCCC
Q ss_conf 89999289949999957863112302103689-989889993899817----------8849999-93682999972676
Q 001415 884 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ----------DQIHFLV-VHETQLAIFETTKL 951 (1082)
Q Consensus 884 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~fsp----------dg~~l~~-~~d~~i~iwd~~~~ 951 (1082)
+|++++.|+.|++|++.+++. .....+ |. ..+.+++|+| ++++|++ +.|+.|++|++.++
T Consensus 502 ~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred EEEECCCCCEEEEEECCCCCC-----EEEEECCCC---CCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCC
T ss_conf 899817998599865777762-----467604788---714699976832345332468888999817971999977888
Q ss_pred -CEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf -21000002799965448998689966999646881999846996
Q 001415 952 -ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 995 (1082)
Q Consensus 952 -~~~~~~~~~~h~~~i~~i~~s~dg~~l~t~s~dg~i~iwd~~~~ 995 (1082)
+++..+. +|...|++++|+||++ |++++.||.|++|++..+
T Consensus 574 ~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 574 MKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp TCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred CEECHHHH--CCCCCEEEEEECCCCC-EEEECCCCEEEEEEEECC
T ss_conf 54031133--5943058999738997-288459963999960159
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=463.42 Aligned_cols=583 Identities=10% Similarity=0.077 Sum_probs=407.0
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 36989755599990299869999689819999944793134779861566674499961799906999971799699998
Q 001415 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1082)
Q Consensus 416 ~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~fs~dg~~~~l~s~s~d~~i~iWd 495 (1082)
..+|.+.|++++|+||+++||+|+.||.|++|+..+.+... . ..|...|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE---E-CCCCCCEEEEEECC-CC--EEEEEECCCEEEEEE
T ss_conf 16889984899997999989999297989999689947999---8-68999779999908-98--899998959599998
Q ss_pred CCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCE-----------EEECCCCCCEEEEEECCC
Q ss_conf 448954699406886748983110489439999648991899946889931-----------342389971578798669
Q 001415 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD 564 (1082)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~d 564 (1082)
+.+++++..+. |.+.|++++|+++. .++++|+.||.|++||++..... .....|..
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~---------- 152 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS---------- 152 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC----------
T ss_pred CCCCCEEEEEC-CCCCEEEEEECCCC--CEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCC----------
T ss_conf 99996899974-89987999987999--989999499929999999996265030432100025445789----------
Q ss_pred CCEEEECCCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEEECC----------------CCCCCCCEEEEC
Q ss_conf 973662311463069994189-997999707982999987885137997059----------------999996808986
Q 001415 565 GTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFN 627 (1082)
Q Consensus 565 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~i~~~~~s 627 (1082)
.+.+++|+|+ +..+++++.|+.| +||+.+++.+..+..+ .+...|.+++|+
T Consensus 153 -----------~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 153 -----------PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp -----------CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred -----------CEEEEEECCCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf -----------738999766999989999189849-99877896579983355776777654433234567776899985
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCEE-ECC---CCC-------------CCCCCCCCCCCCCCCCCCCCC-CCEEEEC
Q ss_conf 9998999997899679998038941101-012---443-------------322333335679982114788-8601211
Q 001415 628 KDGCLLAVSTNDNGIKILATSDGIRLLR-TFE---NLA-------------YDASRTSENSKNGDVRSLADV-KPRITEE 689 (1082)
Q Consensus 628 ~dg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~~-------------~~~~~~~~~~~~~~~~~s~~~-~~l~~~~ 689 (1082)
|+|.+|++++.|+.|++||..++..... .+. .+. ..+. .++|.. ...|++ ..+++++
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~--~v~w~~---~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS--KVYWMC---ENNPEYTSLLISHK 295 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEE--EEEEEE---CSSTTEEEEEEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEE--EEEEEE---CCCCCCCEEEEECC
T ss_conf 9999999998999399998789968888850123457877767888855567745--799973---49998878999688
Q ss_pred CC-----CCEEEEEECCCC---------------CCCCCCCCCCCCCCCCCCEEEEEECC----------CCCEEEECCC
Q ss_conf 69-----932289820357---------------87742222346764466403799916----------9751443126
Q 001415 690 SN-----DKSKVWKLTELS---------------EPNQCRSLRLPENLRATKISRLIFTN----------SGNAILALAS 739 (1082)
Q Consensus 690 ~d-----~~i~iw~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~i~~s~----------~~~~l~~~~~ 739 (1082)
.+ ..+.+|++.... .....+.+.+ .+...+..+.+.+ +...+++.+.
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC---CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC
T ss_conf 77778885289995478987555425565466417452278741---899954799997788988677878506999917
Q ss_pred CCEEEEEECCCCCCCCCC----CCCC------------CCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEE
Q ss_conf 775999630332247998----7655------------558620189986201034689999988018996049983899
Q 001415 740 NAIHLLWKWQRTERNSSG----KATA------------SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 803 (1082)
Q Consensus 740 dg~i~iw~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~l~~ 803 (1082)
++.+++|++..+...... .... .....+|+..............+|...+.+++|+|+++++++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 98489997899985565556898522358972489999749999988886046999754578577875333666758999
Q ss_pred EE-CCEEEEEECCCCEEE----EE--E-----CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCE----------
Q ss_conf 40-990899866898057----89--7-----79999805999905999579997479958999620331----------
Q 001415 804 AS-GGKISLFNMMTFKTM----AT--F-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------- 861 (1082)
Q Consensus 804 ~s-dg~i~iwd~~~~~~~----~~--~-----~~~~~~v~~i~~sp~~~~~lasg~~dg~I~iwd~~~~~---------- 861 (1082)
++ |++|++||+.++... .. + .+|...|.+++|+| ++++||+|+.||+|++|++.+++
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 6589838999787764567736775015413778887646999638-999699994585799999248655575455778
Q ss_pred -----------------------------------EEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf -----------------------------------213522355578999995799989999289949999957863112
Q 001415 862 -----------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 906 (1082)
Q Consensus 862 -----------------------------------~~~~l~~h~~~V~~i~~s~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 906 (1082)
++..+.+|.+.|++++||||| +||+|+.|++|++||+.+.....
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~ 610 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY 610 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEE
T ss_conf 66511345513467965432242368988777601469998688867799964876-89999589769999888983999
Q ss_pred CEEEECCC-CCCCCCCCCCEEEEC-----CCC---CEEEE-EECCEEEEEEC---CCCCEEEEECCC---CCCCCEEEEE
Q ss_conf 30210368-998988999389981-----788---49999-93682999972---676210000027---9996544899
Q 001415 907 NRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT 970 (1082)
Q Consensus 907 ~~~~~~~~-~~~~~~~~v~~i~fs-----pdg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~---~h~~~i~~i~ 970 (1082)
...+.... +|. ..|.+++|+ ||| ++|++ +.|+.|++|++ .+|++...+..+ .|..+|.+++
T Consensus 611 ~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~ 687 (902)
T 2oaj_A 611 MENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKID 687 (902)
T ss_dssp EEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEE
T ss_pred EEEHHHHCCCCC---CCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEE
T ss_conf 702467264666---61399999998417898763389999568739999995589986899966724407889647998
Q ss_pred -EC----------------------CCCCEEEEEECCCCEEEEECCCCEEEEEECCCEECCCCCCCCCCEEEEE---E--
Q ss_conf -86----------------------8996699964688199984699603465278700378888987101699---9--
Q 001415 971 -FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI---A-- 1022 (1082)
Q Consensus 971 -~s----------------------~dg~~l~t~s~dg~i~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~~---~-- 1022 (1082)
|+ +++..|+++ +..|+||++.++++..... +|. ....++ .
T Consensus 688 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~---~~~~~v~~~~~~ 755 (902)
T 2oaj_A 688 AFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------KYP---LAATGLSYISTV 755 (902)
T ss_dssp EEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------SSC---EEEEEEEEEEEE
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEE--CCCEEEEECCCCCCEEEEC-------CCC---EEEEEEEEEEEC
T ss_conf 5866879736688789725577887773999993--5405999675335123672-------562---014477788701
Q ss_pred ----EECCCCCEEEEEECCCCEEEECCCCCC--CCCCCCC
Q ss_conf ----708999769999518929999147887--7323588
Q 001415 1023 ----AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPP 1056 (1082)
Q Consensus 1023 ----~~~~d~~~l~s~~~dg~i~vW~~~~~~--~~~~~~~ 1056 (1082)
|++ ++..|++++.||.|++|++++.+ ..+..++
T Consensus 756 ~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 756 EKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp CSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCCCC-CCEEEEEEECCCCEEEEECCCHHHHHHCCCCC
T ss_conf 3555446-73699999279959999785647784165886
Done!