Your job contains 1 sequence.
>001416
MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV
GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVT
SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD
VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI
LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE
LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVP
PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSA
VYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDS
YSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTP
RLPIIPKGGSSRKAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSE
PVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKS
PAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLG
DVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAE
HGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMM
PKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALS
LSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF
DLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKE
FLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSVRFG
N
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001416
(1081 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176836 - symbol:AT5G24710 "AT5G24710" species... 4282 0. 1
POMBASE|SPBC16C6.13c - symbol:sec27 "coatomer beta' subun... 97 1.4e-06 3
FB|FBgn0025724 - symbol:beta'Cop "beta'-coatomer protein"... 90 1.6e-06 5
ASPGD|ASPL0000006005 - symbol:AN5972 species:162425 "Emer... 90 1.5e-05 5
UNIPROTKB|F1S845 - symbol:TAF5 "Uncharacterized protein" ... 135 3.1e-05 1
UNIPROTKB|I3LC69 - symbol:WDR81 "Uncharacterized protein"... 110 7.6e-05 2
ZFIN|ZDB-GENE-051120-180 - symbol:taf5 "TAF5 RNA polymera... 142 0.00018 2
SGD|S000003105 - symbol:SEC27 "Essential beta'-coat prote... 90 0.00026 3
TAIR|locus:2012971 - symbol:AT1G71840 "AT1G71840" species... 122 0.00051 1
UNIPROTKB|E2RE41 - symbol:TAF5 "Uncharacterized protein" ... 135 0.00070 2
MGI|MGI:2442144 - symbol:Taf5 "TAF5 RNA polymerase II, TA... 135 0.00070 2
UNIPROTKB|E1BVN5 - symbol:PLRG1 "Uncharacterized protein"... 122 0.00074 1
UNIPROTKB|Q9BRP4 - symbol:PAAF1 "Proteasomal ATPase-assoc... 120 0.00079 1
RGD|1311332 - symbol:Taf5 "TAF5 RNA polymerase II, TATA b... 134 0.00088 2
UNIPROTKB|Q15542 - symbol:TAF5 "Transcription initiation ... 134 0.00088 2
DICTYBASE|DDB_G0278285 - symbol:copB2 "coatomer protein c... 84 0.00092 5
MGI|MGI:1858197 - symbol:Plrg1 "pleiotropic regulator 1, ... 121 0.00094 1
FB|FBgn0035724 - symbol:CG10064 species:7227 "Drosophila ... 123 0.00095 1
>TAIR|locus:2176836 [details] [associations]
symbol:AT5G24710 "AT5G24710" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005886 EMBL:CP002688
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 IPI:IPI00536085 RefSeq:NP_197859.4
UniGene:At.22853 ProteinModelPortal:F4KIH8 SMR:F4KIH8 PRIDE:F4KIH8
EnsemblPlants:AT5G24710.1 GeneID:832542 KEGG:ath:AT5G24710
OMA:FMASSGE Uniprot:F4KIH8
Length = 1377
Score = 4282 (1512.4 bits), Expect = 0., P = 0.
Identities = 823/1077 (76%), Positives = 898/1077 (83%)
Query: 1 MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV 60
MLR +AFR TN KIVKIQ+HPTHPWLVTAD SDHVSVWNWEHRQVIYELKAGGVD+RRLV
Sbjct: 1 MLRARAFRQTNGKIVKIQVHPTHPWLVTADDSDHVSVWNWEHRQVIYELKAGGVDERRLV 60
Query: 61 XXXXXXXXXXXXXXXXXPTEAMRGGSVKQVNFYDDDVRFWQLWRNRXXXXXXXXXVSNVT 120
PTEA+RGGSVKQV FYDDDVR+WQLWRNR V+++T
Sbjct: 61 GAKLEKLAEGESDYKAKPTEAIRGGSVKQVKFYDDDVRYWQLWRNRSAAAESPSAVNHLT 120
Query: 121 SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD 180
S F SP PSTKGRHFLVICC NKAIFLDLVTMRGRD+PKQELDNKSL+CMEFLSRS+ GD
Sbjct: 121 SAFTSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQELDNKSLLCMEFLSRSSGGD 180
Query: 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
PLVAFGS+DGVIRVLSMI+WKL RRYTGGHKGSI CLM FMASSGEALLVSGGSDGLL+
Sbjct: 181 GPLVAFGSTDGVIRVLSMITWKLARRYTGGHKGSIYCLMNFMASSGEALLVSGGSDGLLV 240
Query: 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300
LWSADHG DSRELVPKLSLKAHDGGVVAVELSRV G +PQLITIGADKTLAIWDT++FKE
Sbjct: 241 LWSADHGADSRELVPKLSLKAHDGGVVAVELSRVSGSAPQLITIGADKTLAIWDTMTFKE 300
Query: 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVP 360
LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIW+IEHPTYSALTRPLCELSSLVP
Sbjct: 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWSIEHPTYSALTRPLCELSSLVP 360
Query: 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSA 420
PQVLA H+KLRVYCMVAH LQPHLVATGTNVG+I+SEFDPR++P+ APLP GSR++SA
Sbjct: 361 PQVLATHRKLRVYCMVAHPLQPHLVATGTNVGIIVSEFDPRAIPSAAPLPALPGSRENSA 420
Query: 421 VYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDS 480
+YI+ RELKL+NFQLS+ ANPSLGNN +LSE+G KGD + L +KQ KK I PVPHDS
Sbjct: 421 IYILGRELKLLNFQLSNTANPSLGNNSALSESGLSKGDPGEQLTVKQTKKQIVAPVPHDS 480
Query: 481 YSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTP 540
YS+LSVSSSGKY+AVVWPDI YFS+YKVSDWSIVDSGSARLLAWDTCRDRFAILES L
Sbjct: 481 YSVLSVSSSGKYVAVVWPDILYFSIYKVSDWSIVDSGSARLLAWDTCRDRFAILESVLPH 540
Query: 541 RLPIIPKGGSSRKAKEXXXXXXXXXXXXXXXXXXXTVQARILLDDGTSNILMRSIGGSSE 600
R+PIIPKGGSSRKAKE +VQ RILLDDGTSNILMRS+GG SE
Sbjct: 541 RMPIIPKGGSSRKAKEAAAAAAQAAAAASAASSA-SVQVRILLDDGTSNILMRSVGGRSE 599
Query: 601 PVIGLHGGALLGVAYRTXXXXXXXXXXXXXXXQSMPXXXXXXXXXXXXXXXXXXXXXQKS 660
PVIGLHGGALLG+ YRT QSMP QKS
Sbjct: 600 PVIGLHGGALLGIGYRTSRRISPVAATAISTIQSMPLSGFGNSNVSSFSSYDDGFSSQKS 659
Query: 661 PAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLG 720
AE+AP N+QLYSWE F+PVGG+LPQPEWTAWDQTVEYCAFAYQ Y+VISSL PQYRYLG
Sbjct: 660 -AESAPLNYQLYSWENFEPVGGMLPQPEWTAWDQTVEYCAFAYQQYMVISSLRPQYRYLG 718
Query: 721 DVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVXXXXXXXXXXXXXVQSRAVAE 780
DVAI +ATGAVWHRRQLFV TPTTIECVFVDAGV+ ID+ Q+RAVAE
Sbjct: 719 DVAIAHATGAVWHRRQLFVATPTTIECVFVDAGVSEIDIETRKMKEEMKLKEAQARAVAE 778
Query: 781 HGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMM 840
HGELALI VE SQ A Q+RI LRPPMLQVVRLASFQ+A SVPPFL++P+Q++ + DD M
Sbjct: 779 HGELALITVEGSQAAKQERISLRPPMLQVVRLASFQNAPSVPPFLSLPRQSRGDSDDIM- 837
Query: 841 PKDIEERKVNEIXXXXXXXXXXXTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALS 900
+ER+VNE+ TRFP EQKRP+GPLVV GV+DGVLWLIDRYMCAHA+S
Sbjct: 838 ----DERRVNEVAVGGGGVSVAVTRFPVEQKRPVGPLVVAGVRDGVLWLIDRYMCAHAIS 893
Query: 901 LSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF 960
L+HPGIRCRCLAAYGD+VSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF
Sbjct: 894 LNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEF 953
Query: 961 DLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLT-TKKENIVEAVQGIVKFAK 1019
DLAMQSNDLKRAL CL+TMSNS+DIGQD GLDL+DIL+LT TKKE++VEAV+GIVKFAK
Sbjct: 954 DLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLTATKKEDVVEAVEGIVKFAK 1013
Query: 1020 EFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLS 1076
EFLDLIDAADATG A+IAREALKRLA AGSVKGALQGHELRGL+LRLANHGELTRLS
Sbjct: 1014 EFLDLIDAADATGHADIAREALKRLATAGSVKGALQGHELRGLSLRLANHGELTRLS 1070
>POMBASE|SPBC16C6.13c [details] [associations]
symbol:sec27 "coatomer beta' subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006886
"intracellular protein transport" evidence=IC] [GO:0006888 "ER to
Golgi vesicle-mediated transport" evidence=ISO] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO]
[GO:0030126 "COPI vesicle coat" evidence=ISO] [GO:0032511 "late
endosome to vacuole transport via multivesicular body sorting
pathway" evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006692 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04053
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 PomBase:SPBC16C6.13c
GO:GO:0005829 GO:GO:0005634 GO:GO:0006886 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005198 EMBL:CU329671
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GenomeReviews:CU329671_GR GO:GO:0006888 GO:GO:0030126 GO:GO:0006890
HOGENOM:HOG000163444 InterPro:IPR016453 PIRSF:PIRSF005567
OMA:LRNKAFG PIR:T39962 RefSeq:XP_001713153.1
ProteinModelPortal:O42937 STRING:O42937 EnsemblFungi:SPBC16C6.13c.1
GeneID:2540050 KEGG:spo:SPBC16C6.13c OrthoDB:EOG48H0BF
NextBio:20801187 GO:GO:0032511 Uniprot:O42937
Length = 796
Score = 97 (39.2 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 34/114 (29%), Positives = 48/114 (42%)
Query: 182 PLVAFGSSDGVIRVLSM-ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
P + S D I+ + +SWK V+ + G H + L + S DG +
Sbjct: 111 PFLLTSSDDMTIKCFNWDMSWKCVQTFEG-HSRYVMSLAINPKDTNT--FASSCLDGTVK 167
Query: 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294
+WS G V +L+AHD GV V G P LIT G D + +WD
Sbjct: 168 VWS--FGSS----VANFTLQAHDRGVNYVNYYPA-GDKPYLITAGDDNLIKVWD 214
Score = 75 (31.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46
+++ + HPT PW++ + + V +WN+ + ++
Sbjct: 15 ERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLV 49
Score = 75 (31.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942
+D ++L DR M + S + I + L GD +A ++ L+ F+ +
Sbjct: 569 RDDRIYLTDRDMNVVSYSFNLAIIEYQSLVLKGDLEAAQGLLEQISETDRPRLSDFLSRL 628
Query: 943 GYATEALHLPGISKRLEFDLAMQSNDLKRALQ 974
GY AL L G S + F+LA+ + L A Q
Sbjct: 629 GYKEAALELSGDSVQ-RFELALDAQRLDIASQ 659
Score = 74 (31.1 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 34/133 (25%), Positives = 61/133 (45%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
P++ GS DG +++ +S+ L++ Y + C+ A + + LV+ G D LI
Sbjct: 241 PIIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAW-CI----AQNKDNGLVTVGFDNGLIT 295
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
+S G+D P +++ + G VV + VM + +D T ++S KEL
Sbjct: 296 FSL--GRDE----PSVTMDS-SGKVVWSNYNEVMSAMIRPAKEQSDLTDGSLISLSVKEL 348
Query: 302 RRIKPVPKLACHS 314
+ P + HS
Sbjct: 349 GTTELYPAVLKHS 361
>FB|FBgn0025724 [details] [associations]
symbol:beta'Cop "beta'-coatomer protein" species:7227
"Drosophila melanogaster" [GO:0006890 "retrograde vesicle-mediated
transport, Golgi to ER" evidence=NAS] [GO:0030126 "COPI vesicle
coat" evidence=NAS] [GO:0048194 "Golgi vesicle budding"
evidence=NAS] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=NAS] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA] [GO:0010883
"regulation of lipid storage" evidence=IDA] [GO:0005795 "Golgi
stack" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006692 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04053
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 GO:GO:0006886
EMBL:AE014134 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005198 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006888 GO:GO:0030126 GO:GO:0010883 GO:GO:0006890
InterPro:IPR011044 SUPFAM:SSF50969 InterPro:IPR016453
PIRSF:PIRSF005567 GeneTree:ENSGT00640000091529 OMA:LRNKAFG
EMBL:AJ006523 EMBL:AJ006524 EMBL:BT023906 EMBL:AY119527
RefSeq:NP_524836.2 UniGene:Dm.2980 ProteinModelPortal:O62621
SMR:O62621 DIP:DIP-22262N MINT:MINT-1636818 STRING:O62621
PaxDb:O62621 PRIDE:O62621 EnsemblMetazoa:FBtr0080469 GeneID:45757
KEGG:dme:Dmel_CG6699 CTD:45757 FlyBase:FBgn0025724
InParanoid:O62621 OrthoDB:EOG4VHHN9 PhylomeDB:O62621
ChiTaRS:beta'Cop GenomeRNAi:45757 NextBio:838315 Bgee:O62621
GermOnline:CG6699 Uniprot:O62621
Length = 914
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(5) = 1.6e-06
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 929 REHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQD 988
+EH +A F+ G+ ++AL + + +FDLA+Q DL+ AL+ NS+ Q
Sbjct: 617 KEHRTRVAHFLEKQGFKSQALQVSTDADH-KFDLALQIGDLEIALKLARESENSQKWSQ- 674
Query: 989 HPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAG 1048
L D+ + K N+ V+ ++ A + L+ + A+G A + L+ + AAG
Sbjct: 675 -----LADV---ASSKNNM-SLVKECMQKANDLSGLLLLSTASGDAQL----LEVVGAAG 721
Query: 1049 SVKG 1052
S +G
Sbjct: 722 SAQG 725
Score = 87 (35.7 bits), Expect = 1.6e-06, Sum P(5) = 1.6e-06
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQR 57
+D++ + LHP PW++ A + HV + N+E++Q++ + + V R
Sbjct: 15 SDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVR 61
Score = 73 (30.8 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
++ +F +D + I +HPT P ++T+ + +WNWE
Sbjct: 91 KVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWE 129
Score = 66 (28.3 bits), Expect = 1.6e-06, Sum P(5) = 1.6e-06
Identities = 37/160 (23%), Positives = 66/160 (41%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PLV S D +I++ + +R GH + ++ F S D + +
Sbjct: 112 PLVLTSSDDMLIKLWNWEKMWACQRVFEGHTHYVMQIV-FNPKDNNTF-ASASLDRTVKV 169
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W G + +L+ H+ GV V+ G P LI+ D+ + IWD ++
Sbjct: 170 WQL--GSN----FANFTLEGHEKGVNCVDYYHG-GDKPYLISGADDRLVKIWD---YQNK 219
Query: 302 RRIKPVPKLACHSVASWC-HPRAPNLDILTCVKDS--HIW 338
++ + A ++++ C HP P +LT +D IW
Sbjct: 220 TCVQTLEGHA-QNISAVCFHPELPI--VLTGSEDGTVRIW 256
Score = 63 (27.2 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269
GH+ ++C+ + + L+SG D L+ +W D+ ++ V +L+ H + AV
Sbjct: 183 GHEKGVNCV-DYYHGGDKPYLISGADDRLVKIW--DY--QNKTCVQ--TLEGHAQNISAV 235
Query: 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFK 299
+ P ++T D T+ IW + +++
Sbjct: 236 CFHPEL---PIVLTGSEDGTVRIWHSGTYR 262
Score = 51 (23.0 bits), Expect = 1.6e-06, Sum P(5) = 1.6e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 672 YSWETFQPVGGLLPQPEWTAWDQTVEY-CAFAYQHYIVI 709
Y WET Q V + QP+ W+++ C Y V+
Sbjct: 452 YDWETLQLVRRIEVQPKNVFWNESGSLVCLATDDSYFVL 490
Score = 51 (23.0 bits), Expect = 4.1e-05, Sum P(5) = 4.1e-05
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224
K + C+++ GD P + G+ D ++++ + V+ G H +IS + F
Sbjct: 186 KGVNCVDYYHG---GDKPYLISGADDRLVKIWDYQNKTCVQTLEG-HAQNISAVC-FHPE 240
Query: 225 SGEALLVSGGSDGLLILW 242
++++G DG + +W
Sbjct: 241 L--PIVLTGSEDGTVRIW 256
Score = 47 (21.6 bits), Expect = 9.7e-05, Sum P(5) = 9.7e-05
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 180 DVPLVAFGSSDGVIRVLSMISWKL 203
++P+V GS DG +R+ +++L
Sbjct: 240 ELPIVLTGSEDGTVRIWHSGTYRL 263
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(5) = 1.6e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 517 GSARLLAWDTCRDRFAILESALTPRL 542
GSA+ W + +AI E+ T RL
Sbjct: 391 GSAQEFVWALESNEYAIRENNGTVRL 416
>ASPGD|ASPL0000006005 [details] [associations]
symbol:AN5972 species:162425 "Emericella nidulans"
[GO:0030126 "COPI vesicle coat" evidence=IEA] [GO:0043130
"ubiquitin binding" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0032511 "late endosome to vacuole
transport via multivesicular body sorting pathway" evidence=IEA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006692 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04053
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 GO:GO:0006886
GO:GO:0030117 GO:GO:0016192 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005198 InterPro:IPR020472 PRINTS:PR00320 EMBL:BN001301
InterPro:IPR011044 SUPFAM:SSF50969 HOGENOM:HOG000163444
InterPro:IPR016453 PIRSF:PIRSF005567 OMA:LRNKAFG
ProteinModelPortal:C8V3C4 EnsemblFungi:CADANIAT00007048
Uniprot:C8V3C4
Length = 853
Score = 90 (36.7 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI--YEL 49
++++ I HPT PW++T S HV +W++E + +I +EL
Sbjct: 13 SERVKGIDFHPTEPWILTTLYSGHVYIWSYETQSIIKTFEL 53
Score = 89 (36.4 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 26/101 (25%), Positives = 53/101 (52%)
Query: 876 PLVVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHD 933
P+ V+G +DG +++ D+ + A + +LS + + + GD A + + ++ +
Sbjct: 560 PMYVLGYLPRDGRVYVADKDVNAVSFALSLSMVEYQTVVLRGDMELAAELLQDIPQDQMN 619
Query: 934 DLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQ 974
+A+F+ G GY AL + + F+LA+ N+L AL+
Sbjct: 620 KVARFLEGQGYKELALEV-ATDQEHRFELALALNNLDIALE 659
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 40/148 (27%), Positives = 58/148 (39%)
Query: 182 PLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
P V S D I++ WK V+ Y G H + L + S D +
Sbjct: 110 PFVLTASDDMTIKLWDWEKGWKCVQVYEG-HSHYVMGLAINPKDTNT--FASACLDRTVK 166
Query: 241 LWSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299
+WS G +L+AH+ GV V+ P L+T DKT+ +WD + K
Sbjct: 167 IWSL--GSPHANF----TLEAHETKGVNHVDYYP-QADKPYLLTTSDDKTVKVWDYTT-K 218
Query: 300 ELRRIKPVPKLACHS--VASWC-HPRAP 324
L + L H+ V+ C HP P
Sbjct: 219 AL-----IATLEGHTSNVSFACYHPELP 241
Score = 51 (23.0 bits), Expect = 0.00025, Sum P(5) = 0.00025
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239
++P++ GS DG I++ +++L + + G + + C+ G AL G DG +
Sbjct: 239 ELPVIISGSEDGTIKIWHANTYRLEQSLSYGLERAW-CVSYQRGKQGVAL---GFDDGAV 294
Query: 240 IL 241
++
Sbjct: 295 VV 296
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 604 GLHGGALLGV 613
GL GG LLGV
Sbjct: 433 GLTGGVLLGV 442
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 671 LYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA 702
++ WET V + +P W ++ E A
Sbjct: 450 MFDWETGNLVRRIEVEPRNVYWSESGELVTLA 481
>UNIPROTKB|F1S845 [details] [associations]
symbol:TAF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0033276 "transcription factor TFTC complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0005669 "transcription factor TFIID
complex" evidence=IEA] [GO:0004402 "histone acetyltransferase
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR007582 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04494 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0015629 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0003700 GO:GO:0044212 GO:GO:0006367 GO:GO:0004402
GO:GO:0005669 GO:GO:0033276 GeneTree:ENSGT00700000104377
OMA:ERQNNQI ProteinModelPortal:F1S845 Ensembl:ENSSSCT00000011591
Uniprot:F1S845
Length = 542
Score = 135 (52.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GS+D +R+ +++ VR +TG HKG I L TF S L +G +DG ++LW
Sbjct: 402 VATGSADRTVRLWDVLNGNCVRIFTG-HKGPIHSL-TF--SPNGRFLATGATDGRVLLWD 457
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV-SFKEL 301
HG EL K H V ++ SR +++ G+ D T+ +WD V +F++L
Sbjct: 458 IGHGLMVGEL------KGHTDTVCSLRFSR----DGEILASGSMDNTVRLWDAVKAFEDL 507
>UNIPROTKB|I3LC69 [details] [associations]
symbol:WDR81 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0010923
GeneTree:ENSGT00390000003969 Ensembl:ENSSSCT00000029533 OMA:FILETIT
Uniprot:I3LC69
Length = 647
Score = 110 (43.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA-DHGQDSRELVPKLS 258
+W + GH G+I C++ S E +SG D + LW + G +RE P+L
Sbjct: 359 NWLAYWQXFPGHSGAIKCVVPL---SSEDFFLSGSKDRTVRLWPLYNSGDGTRETAPRLV 415
Query: 259 LKAHDGGVVAV-ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306
H V V +L +PQ + + D + IWD + K LR ++P
Sbjct: 416 YTQHRKSVFFVGQLE-----APQCV-VSCDGAVHIWDPFTGKTLRTVEP 458
Score = 72 (30.4 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 35/123 (28%), Positives = 56/123 (45%)
Query: 392 GVIISEFDPRSLPAVAPLPTPS---GSRDHSAVYIVERELKLVN-FQLSSAANPSLGNNG 447
G + +P ++ AV P P S S D + ++ R+ L + F+LS NP L +
Sbjct: 450 GKTLRTVEPTAV-AVMPAPYTSITMASSDSTLRFVDCRKPGLQHEFRLSGGLNPGLVRSL 508
Query: 448 SLSETGRLKGD--------LP-DALQIKQIKKHISTPVPHDSYS-ILSVSSSGKYLAVVW 497
++S +GR G+ LP DAL +P+P + L VSSS + VW
Sbjct: 509 AVSPSGRSXGNQGAELTLLLPGDALMSNPCPYLPCSPLPGQAVEGSLLVSSSSDHSLTVW 568
Query: 498 PDI 500
++
Sbjct: 569 KEL 571
>ZFIN|ZDB-GENE-051120-180 [details] [associations]
symbol:taf5 "TAF5 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR006594
InterPro:IPR007582 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04494
PROSITE:PS50082 PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320
SMART:SM00667 ZFIN:ZDB-GENE-051120-180 GO:GO:0005634 GO:GO:0006355
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GeneTree:ENSGT00700000104377 HOVERGEN:HBG050226 OMA:ERQNNQI
OrthoDB:EOG469QW7 HOGENOM:HOG000212424 EMBL:CR812943
IPI:IPI00656497 UniGene:Dr.78627 ProteinModelPortal:B8JIQ0
Ensembl:ENSDART00000015007 ArrayExpress:B8JIQ0 Bgee:B8JIQ0
Uniprot:B8JIQ0
Length = 756
Score = 142 (55.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 40/114 (35%), Positives = 61/114 (53%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GSSD +R+ +++ VR +TG HKG I L + +G+ L SG +DG ++LW
Sbjct: 598 VATGSSDRTVRLWDVLNGNCVRIFTG-HKGPIHSLA--FSPNGK-FLASGSTDGRVLLWD 653
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV 296
HG EL K H G + A++ SR ++I G+ D T+ +WD +
Sbjct: 654 IGHGLMIAEL------KGHTGTIYALKFSR----DGEIIASGSIDNTVRLWDVM 697
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 158 PKQELDNKSLVCMEFLSRSAVGD 180
PK E L ++FL RS + +
Sbjct: 65 PKPEDQQTLLAVLQFLKRSKLAE 87
>SGD|S000003105 [details] [associations]
symbol:SEC27 "Essential beta'-coat protein of the COPI
coatomer" species:4932 "Saccharomyces cerevisiae" [GO:0000139
"Golgi membrane" evidence=IEA] [GO:0032511 "late endosome to
vacuole transport via multivesicular body sorting pathway"
evidence=IMP;IPI] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0030126 "COPI vesicle coat" evidence=IGI;ISS] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IMP] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP]
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0030117 "membrane coat" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006692 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04053 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SGD:S000003105 GO:GO:0006886 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 EMBL:BK006941
GO:GO:0005198 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006888 GO:GO:0030126 GO:GO:0006890 GO:GO:0043130
HOGENOM:HOG000163444 InterPro:IPR016453 PIRSF:PIRSF005567
GeneTree:ENSGT00640000091529 OMA:LRNKAFG OrthoDB:EOG48H0BF
GO:GO:0032511 EMBL:U11237 EMBL:X92670 EMBL:Z72659 PIR:B55123
RefSeq:NP_011378.1 PDB:2YNN PDB:2YNO PDB:2YNP PDBsum:2YNN
PDBsum:2YNO PDBsum:2YNP ProteinModelPortal:P41811 SMR:P41811
DIP:DIP-6468N IntAct:P41811 MINT:MINT-428887 STRING:P41811
PaxDb:P41811 PeptideAtlas:P41811 EnsemblFungi:YGL137W GeneID:852740
KEGG:sce:YGL137W CYGD:YGL137w NextBio:972153 Genevestigator:P41811
GermOnline:YGL137W Uniprot:P41811
Length = 889
Score = 90 (36.7 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
K F +D++ I HPT PW++T S V +WN+E
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE 43
Score = 74 (31.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 31/115 (26%), Positives = 51/115 (44%)
Query: 182 PLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
P V GS D +++ + + W L + + G H+ + C+ F + SG D +
Sbjct: 110 PYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCV-AFNPKD-PSTFASGCLDRTVK 166
Query: 241 LWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294
+WS GQ + P +L + GV V+ + P +IT D T+ IWD
Sbjct: 167 VWSL--GQST----PNFTLTTGQERGVNYVDYYP-LPDKPYMITASDDLTIKIWD 214
Score = 62 (26.9 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 22/96 (22%), Positives = 46/96 (47%)
Query: 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK--WASRLGREHHDDLAQFML 940
+D ++L DR + + +S + + L G+ A++ + G++ +A+F+
Sbjct: 581 RDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLE 640
Query: 941 GMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCL 976
G Y EAL++ + +F+LA++ L A L
Sbjct: 641 GQEYYEEALNISPDQDQ-KFELALKVGQLTLARDLL 675
>TAIR|locus:2012971 [details] [associations]
symbol:AT1G71840 "AT1G71840" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002684 GO:GO:0005829
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 HOGENOM:HOG000261676 OMA:VWSFEVG HSSP:P16649
EMBL:AY080732 EMBL:BT001964 IPI:IPI00538190 RefSeq:NP_177329.2
UniGene:At.44000 ProteinModelPortal:Q8RXQ4 SMR:Q8RXQ4 IntAct:Q8RXQ4
PRIDE:Q8RXQ4 EnsemblPlants:AT1G71840.1 GeneID:843514
KEGG:ath:AT1G71840 TAIR:At1g71840 InParanoid:Q8RXQ4
PhylomeDB:Q8RXQ4 ProtClustDB:CLSN2680639 ArrayExpress:Q8RXQ4
Genevestigator:Q8RXQ4 Uniprot:Q8RXQ4
Length = 407
Score = 122 (48.0 bits), Expect = 0.00051, P = 0.00051
Identities = 36/132 (27%), Positives = 65/132 (49%)
Query: 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS 224
+ L C++ S S+ L GS DG + ++++++ K+V H S+ C+ +S
Sbjct: 243 EGLTCLDINSNSS-----LAISGSKDGSVHIVNIVTGKVVSSLNS-HTDSVECVKFSPSS 296
Query: 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284
+ L +GG D LI+W H P+ + H+ GV ++ +G S L T
Sbjct: 297 ATIPLAATGGMDKKLIIWDLQHS------TPRFICE-HEEGVTSLTW---IGTSKYLATG 346
Query: 285 GADKTLAIWDTV 296
A+ T++IWD++
Sbjct: 347 CANGTVSIWDSL 358
>UNIPROTKB|E2RE41 [details] [associations]
symbol:TAF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0033276 "transcription factor TFTC
complex" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005669 "transcription
factor TFIID complex" evidence=IEA] [GO:0004402 "histone
acetyltransferase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006594 InterPro:IPR007582 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04494 PROSITE:PS50082 PROSITE:PS50294
PROSITE:PS50896 SMART:SM00320 SMART:SM00667 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0015629
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0003700 GO:GO:0044212
GO:GO:0006367 GO:GO:0004402 GO:GO:0005669 GO:GO:0033276
GeneTree:ENSGT00700000104377 KO:K03130 CTD:6877 OMA:ERQNNQI
EMBL:AAEX03015497 RefSeq:XP_003433663.1 Ensembl:ENSCAFT00000016513
GeneID:100688981 KEGG:cfa:100688981 Uniprot:E2RE41
Length = 801
Score = 135 (52.6 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GS+D +R+ +++ VR +TG HKG I L TF S L +G +DG ++LW
Sbjct: 643 VATGSADRTVRLWDVLNGNCVRIFTG-HKGPIHSL-TF--SPNGRFLATGATDGRVLLWD 698
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV-SFKEL 301
HG EL K H V ++ SR +++ G+ D T+ +WD V +F++L
Sbjct: 699 IGHGLMVGEL------KGHTDTVCSLRFSR----DGEILASGSMDNTVRLWDAVKAFEDL 748
Score = 39 (18.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 576 TVQARILLDDGTSNILMRSIGGSSEPVIGLH 606
T I L + + +L+ + S PV+ LH
Sbjct: 755 TATGHINLPENSQELLLGTYMTKSTPVVHLH 785
>MGI|MGI:2442144 [details] [associations]
symbol:Taf5 "TAF5 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005669
"transcription factor TFIID complex" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISO] [GO:0016573 "histone acetylation"
evidence=ISO] [GO:0033276 "transcription factor TFTC complex"
evidence=ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006594 InterPro:IPR007582 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04494 PROSITE:PS50082 PROSITE:PS50294
PROSITE:PS50896 SMART:SM00320 SMART:SM00667 MGI:MGI:2442144
GO:GO:0006355 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0003677 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0006351 GO:GO:0005669 HOVERGEN:HBG050226
KO:K03130 CTD:6877 OrthoDB:EOG469QW7 EMBL:AK031985 EMBL:AK088953
IPI:IPI00223695 RefSeq:NP_796316.2 UniGene:Mm.301522
ProteinModelPortal:Q8C092 SMR:Q8C092 STRING:Q8C092
PhosphoSite:Q8C092 PaxDb:Q8C092 PRIDE:Q8C092 DNASU:226182
GeneID:226182 KEGG:mmu:226182 UCSC:uc008hun.1 HOGENOM:HOG000212424
InParanoid:Q8C092 NextBio:378056 Genevestigator:Q8C092
GermOnline:ENSMUSG00000025049 Uniprot:Q8C092
Length = 801
Score = 135 (52.6 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GS+D +R+ +++ VR +TG HKG I L TF S L +G +DG ++LW
Sbjct: 643 VATGSADRTVRLWDVLNGNCVRIFTG-HKGPIHSL-TF--SPNGRFLATGATDGRVLLWD 698
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV-SFKEL 301
HG EL K H V ++ SR +++ G+ D T+ +WD V +F++L
Sbjct: 699 IGHGLMVGEL------KGHTDTVCSLRFSR----DGEILASGSMDNTVRLWDAVKAFEDL 748
Score = 39 (18.8 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 576 TVQARILLDDGTSNILMRSIGGSSEPVIGLH 606
T I L + + +L+ + S PV+ LH
Sbjct: 755 TATGHINLPENSQELLLGTYMTKSTPVVHLH 785
>UNIPROTKB|E1BVN5 [details] [associations]
symbol:PLRG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013
CTD:5356 GeneTree:ENSGT00700000104496 KO:K12862 OMA:ITAEADK
EMBL:AADN02016546 IPI:IPI00576149 RefSeq:XP_420368.2
UniGene:Gga.9982 ProteinModelPortal:E1BVN5
Ensembl:ENSGALT00000015067 GeneID:422401 KEGG:gga:422401
NextBio:20825038 Uniprot:E1BVN5
Length = 516
Score = 122 (48.0 bits), Expect = 0.00074, P = 0.00074
Identities = 56/205 (27%), Positives = 83/205 (40%)
Query: 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260
WKL R GH G + C+ G V+G +D + +W G+ KLSL
Sbjct: 196 WKLYR-VISGHLGWVRCIAV---EPGNQWFVTGSADRTIKIWDLASGK------LKLSLT 245
Query: 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320
H V V +S SP L + G DK + WD K +R H A +
Sbjct: 246 GHISTVRGVIVS---ARSPYLFSCGEDKQVKCWDLEYNKVIRHYHG------HLSAVYGL 296
Query: 321 PRAPNLDIL-TCVKDS--HIWAIEHP----TYSALTRPLCELS-SLVPPQVL--AHHKKL 370
P +D+L TC +DS IW + T S T + + PQV+ +H +
Sbjct: 297 DLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVKCQAAEPQVVTGSHDTTI 356
Query: 371 RVYCMVAHSLQPHLVATGTNVGVII 395
R++ +VA + L +V +I
Sbjct: 357 RLWDLVAGKTRVTLTNHKKSVRAVI 381
>UNIPROTKB|Q9BRP4 [details] [associations]
symbol:PAAF1 "Proteasomal ATPase-associated factor 1"
species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0019048 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 EMBL:CH471076 GO:GO:0000502
EMBL:AP002770 CTD:80227 HOVERGEN:HBG056033 KO:K11887 OMA:HPPGKPS
OrthoDB:EOG41VK31 EMBL:AF087895 EMBL:AK021910 EMBL:AK222501
EMBL:AK298258 EMBL:AK316394 EMBL:BC006142 EMBL:BC021541
EMBL:BC028628 IPI:IPI00743862 IPI:IPI00867542 IPI:IPI01009790
RefSeq:NP_001254732.1 RefSeq:NP_001254733.1 RefSeq:NP_001254734.1
RefSeq:NP_001254735.1 RefSeq:NP_079431.1 UniGene:Hs.525017
ProteinModelPortal:Q9BRP4 SMR:Q9BRP4 IntAct:Q9BRP4 STRING:Q9BRP4
PhosphoSite:Q9BRP4 DMDM:97217547 PaxDb:Q9BRP4 PRIDE:Q9BRP4
DNASU:80227 Ensembl:ENST00000310571 Ensembl:ENST00000376384
Ensembl:ENST00000535604 Ensembl:ENST00000536003
Ensembl:ENST00000544552 GeneID:80227 KEGG:hsa:80227 UCSC:uc001ouk.1
UCSC:uc001oul.1 GeneCards:GC11P073588 H-InvDB:HIX0009924
HGNC:HGNC:25687 HPA:HPA039952 neXtProt:NX_Q9BRP4
PharmGKB:PA162398551 InParanoid:Q9BRP4 PhylomeDB:Q9BRP4
GenomeRNAi:80227 NextBio:70653 ArrayExpress:Q9BRP4 Bgee:Q9BRP4
CleanEx:HS_PAAF1 Genevestigator:Q9BRP4 GermOnline:ENSG00000175575
Uniprot:Q9BRP4
Length = 392
Score = 120 (47.3 bits), Expect = 0.00079, P = 0.00079
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF 221
+ KS+ C++ SR +G S+DG +++ + +L RR GH ++C F
Sbjct: 90 IHTKSITCLDISSRGGLG-----VSSSTDGTMKIWQASNGEL-RRVLEGHVFDVNCCRFF 143
Query: 222 MASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281
SG +L SGG D L +WSA+ D+ +V + K H GG++ + ++ +
Sbjct: 144 --PSGLVVL-SGGMDAQLKIWSAE---DASCVV---TFKGHKGGILD---TAIVDRGRNV 191
Query: 282 ITIGADKTLAIWD 294
++ D T +WD
Sbjct: 192 VSASRDGTARLWD 204
>RGD|1311332 [details] [associations]
symbol:Taf5 "TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0004402
"histone acetyltransferase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA;ISO] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0015629 "actin cytoskeleton"
evidence=IEA;ISO] [GO:0016573 "histone acetylation" evidence=ISO]
[GO:0033276 "transcription factor TFTC complex" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA;ISO] [GO:0046983 "protein dimerization
activity" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR006594
InterPro:IPR007582 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04494
PROSITE:PS50082 PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320
SMART:SM00667 RGD:1311332 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0015629 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0003700 GO:GO:0044212 GO:GO:0006367
GO:GO:0004402 GO:GO:0005669 EMBL:CH473986 GO:GO:0033276
GeneTree:ENSGT00700000104377 KO:K03130 CTD:6877 OMA:ERQNNQI
OrthoDB:EOG469QW7 IPI:IPI00361559 RefSeq:NP_001099835.1
UniGene:Rn.144813 Ensembl:ENSRNOT00000027482 GeneID:294018
KEGG:rno:294018 UCSC:RGD:1311332 NextBio:637428 Uniprot:D3ZH66
Length = 798
Score = 134 (52.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GS+D +R+ +++ VR +TG HKG I L TF S L +G +DG ++LW
Sbjct: 640 VATGSADRTVRLWDVLNGNCVRIFTG-HKGPIHSL-TF--SPNGRFLATGATDGRVLLWD 695
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV-SFKEL 301
HG EL K H V ++ SR +++ G+ D T+ +WD + +F++L
Sbjct: 696 IGHGLMVGEL------KGHTDTVCSLRFSR----DGEILASGSMDNTVRLWDAIKAFEDL 745
Score = 39 (18.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 576 TVQARILLDDGTSNILMRSIGGSSEPVIGLH 606
T I L + + +L+ + S PV+ LH
Sbjct: 752 TATGHINLPENSQELLLGTYMTKSTPVVHLH 782
>UNIPROTKB|Q15542 [details] [associations]
symbol:TAF5 "Transcription initiation factor TFIID subunit
5" species:9606 "Homo sapiens" [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005669
"transcription factor TFIID complex" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004402 "histone acetyltransferase activity"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0033276 "transcription factor TFTC
complex" evidence=IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA] [GO:0016568 "chromatin modification"
evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0016573 "histone
acetylation" evidence=IDA] Reactome:REACT_71 InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006594 InterPro:IPR007582
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04494 PROSITE:PS50082
PROSITE:PS50294 PROSITE:PS50896 SMART:SM00320 SMART:SM00667
Reactome:REACT_116125 GO:GO:0019048 GO:GO:0016032
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0015629 EMBL:CH471066 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0016573 GO:GO:0003700
GO:GO:0046983 GO:GO:0044212 GO:GO:0006368 EMBL:AL591408
GO:GO:0006367 Reactome:REACT_1788 GO:GO:0005669 GO:GO:0033276
HOVERGEN:HBG050226 KO:K03130 CTD:6877 OMA:ERQNNQI EMBL:X95525
EMBL:U75309 EMBL:U80191 EMBL:AK223615 EMBL:AK291229 EMBL:BC052268
EMBL:BC136340 EMBL:BC136348 IPI:IPI00298925 IPI:IPI00298926
RefSeq:NP_008882.2 UniGene:Hs.96103 PDB:2NXP PDBsum:2NXP
ProteinModelPortal:Q15542 SMR:Q15542 DIP:DIP-28150N IntAct:Q15542
STRING:Q15542 PhosphoSite:Q15542 DMDM:78103206 PaxDb:Q15542
PRIDE:Q15542 Ensembl:ENST00000351396 Ensembl:ENST00000369839
GeneID:6877 KEGG:hsa:6877 UCSC:uc001kwv.3 UCSC:uc010qqq.2
GeneCards:GC10P105117 HGNC:HGNC:11539 HPA:HPA006195 HPA:HPA006474
MIM:601787 neXtProt:NX_Q15542 PharmGKB:PA36314 InParanoid:Q15542
OrthoDB:EOG469QW7 PhylomeDB:Q15542 EvolutionaryTrace:Q15542
GenomeRNAi:6877 NextBio:26855 Bgee:Q15542 CleanEx:HS_TAF5
Genevestigator:Q15542 GermOnline:ENSG00000148835 Uniprot:Q15542
Length = 800
Score = 134 (52.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243
VA GS+D +R+ +++ VR +TG HKG I L TF S L +G +DG ++LW
Sbjct: 642 VATGSADRTVRLWDVLNGNCVRIFTG-HKGPIHSL-TF--SPNGRFLATGATDGRVLLWD 697
Query: 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV-SFKEL 301
HG EL K H V ++ SR +++ G+ D T+ +WD + +F++L
Sbjct: 698 IGHGLMVGEL------KGHTDTVCSLRFSR----DGEILASGSMDNTVRLWDAIKAFEDL 747
Score = 39 (18.8 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 576 TVQARILLDDGTSNILMRSIGGSSEPVIGLH 606
T I L + + +L+ + S PV+ LH
Sbjct: 754 TATGHINLPENSQELLLGTYMTKSTPVVHLH 784
>DICTYBASE|DDB_G0278285 [details] [associations]
symbol:copB2 "coatomer protein complex beta 2 subunit
(beta prime)" species:44689 "Dictyostelium discoideum" [GO:0030117
"membrane coat" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=ISS]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0000139 "Golgi membrane" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR006692 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04053 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 dictyBase:DDB_G0278285 GO:GO:0006886 GO:GO:0016192
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GenomeReviews:CM000152_GR GO:GO:0005198 EMBL:AAFI02000023
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0030126
HSSP:P63005 InterPro:IPR016453 PIRSF:PIRSF005567 OMA:LRNKAFG
RefSeq:XP_642264.1 ProteinModelPortal:Q54YD8 STRING:Q54YD8
EnsemblProtists:DDB0233798 GeneID:8621473 KEGG:ddi:DDB_G0278285
ProtClustDB:CLSZ2729111 Uniprot:Q54YD8
Length = 1005
Score = 84 (34.6 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46
K +D++ + +HPT PW++ + +V +WN+E + ++
Sbjct: 9 KKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMV 50
Score = 68 (29.0 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 35/102 (34%), Positives = 46/102 (45%)
Query: 255 PKLSLKAHDGGVVAVELSRVMGGS-PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313
P +L+ H+ G+ +VE GG P LI+ DK + IWD S K V L H
Sbjct: 178 PHFTLEGHEKGINSVEY--FSGGEKPYLISGADDKLVKIWDYQS-KTC-----VQTLEGH 229
Query: 314 S--VASWC-HPRAPNLDILTCVKDSHIWAIEHPTYSALTRPL 352
S V+ C HP P IL+ +D + TY L R L
Sbjct: 230 SNNVSVVCYHPELPL--ILSGSEDGTVKLWHSSTYR-LERTL 268
Score = 66 (28.3 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 40/172 (23%), Positives = 75/172 (43%)
Query: 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942
+ G L+L D+ + + L I + GD A + ++ ++ + +A F+
Sbjct: 571 QSGRLYLSDKNLNIVSYKLHISVISYQTSILRGDLEGAERILPKIPQDQRNSIAHFLESQ 630
Query: 943 GYATEALHLPGISKRLE--FDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTL 1000
GY +AL +S L+ F+LA+Q +L A + I + + + H L D L L
Sbjct: 631 GYKEKALE---VSTDLDHRFELAIQLENLDVAHE--IALKSDSETKFKH----LGD-LAL 680
Query: 1001 TTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKG 1052
+ + ++ + +K A++ L+ +TG E +K LA KG
Sbjct: 681 SIGE---IKLAENCLKKAEDLPGLLLLYTSTGDI----EGMKMLAKLSEEKG 725
Score = 48 (22.0 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 484 LSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLP 543
L +S+G++++V F +Y W G+A W ++A+ ES T R+
Sbjct: 359 LQHNSNGRFVSVCGDG--EFIIYTALAWRNKSFGNALEFVWAEDSGQYAVRES--TSRIK 414
Query: 544 I 544
I
Sbjct: 415 I 415
Score = 38 (18.4 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 604 GLHGGALLGV 613
G+ GG+LLGV
Sbjct: 433 GIFGGSLLGV 442
>MGI|MGI:1858197 [details] [associations]
symbol:Plrg1 "pleiotropic regulator 1, PRL1 homolog
(Arabidopsis)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 MGI:MGI:1858197 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016607
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006397
GO:GO:0071013 CTD:5356 GeneTree:ENSGT00700000104496
HOGENOM:HOG000207595 HOVERGEN:HBG053621 KO:K12862 OMA:ITAEADK
OrthoDB:EOG4M65HB EMBL:AF044334 EMBL:AK075993 EMBL:AK076007
EMBL:AK077197 EMBL:BC006750 EMBL:BC052895 IPI:IPI00331172
RefSeq:NP_058064.2 UniGene:Mm.286349 ProteinModelPortal:Q922V4
SMR:Q922V4 STRING:Q922V4 PhosphoSite:Q922V4 PaxDb:Q922V4
PRIDE:Q922V4 Ensembl:ENSMUST00000150268 GeneID:53317 KEGG:mmu:53317
UCSC:uc008ppi.1 InParanoid:Q922V4 NextBio:310109 Bgee:Q922V4
Genevestigator:Q922V4 GermOnline:ENSMUSG00000027998 Uniprot:Q922V4
Length = 513
Score = 121 (47.7 bits), Expect = 0.00094, P = 0.00094
Identities = 53/187 (28%), Positives = 77/187 (41%)
Query: 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260
WKL R GH G + C+ G V+G +D + +W G+ KLSL
Sbjct: 193 WKLYR-VISGHLGWVRCIAV---EPGNQWFVTGSADRTIKIWDLASGK------LKLSLT 242
Query: 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320
H V V +S SP L + G DK + WD K +R H A +
Sbjct: 243 GHISTVRGVIVST---RSPYLFSCGEDKQVKCWDLEYNKVIRHYHG------HLSAVYGL 293
Query: 321 PRAPNLDIL-TCVKDS--HIWAIEHP----TYSALTRPLCELS-SLVPPQVL--AHHKKL 370
P LD+L TC +DS IW + T S T + + PQ++ +H +
Sbjct: 294 DLHPTLDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTI 353
Query: 371 RVYCMVA 377
R++ +VA
Sbjct: 354 RLWDLVA 360
>FB|FBgn0035724 [details] [associations]
symbol:CG10064 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR011047
SUPFAM:SSF50998 HSSP:P16649 EMBL:AY089248 ProteinModelPortal:Q8T4D0
SMR:Q8T4D0 STRING:Q8T4D0 PaxDb:Q8T4D0 PRIDE:Q8T4D0
FlyBase:FBgn0035724 InParanoid:Q8T4D0 OrthoDB:EOG4547DW
ArrayExpress:Q8T4D0 Bgee:Q8T4D0 Uniprot:Q8T4D0
Length = 742
Score = 123 (48.4 bits), Expect = 0.00095, P = 0.00095
Identities = 68/241 (28%), Positives = 108/241 (44%)
Query: 189 SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD-HG 247
+DG+IR + I+ +L+ H S L +ASSG L+V+GG +G + +W D +
Sbjct: 429 NDGIIRAFTPITGRLIYAIPNAHNKGCSALA--VASSGR-LIVTGGIEGQVRVWKIDPYR 485
Query: 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307
QD LV L K H G + +++++ + ++I+ D + IWD K + R + V
Sbjct: 486 QD---LVGVL--KDHSGPITSLDINYL---DTEVISACTDGSCVIWD---IKRMTRKQVV 534
Query: 308 PKLACHSVASWCHPRAPNLDILTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLA 365
AS+ P + ++TC D I W + + AL R L S LA
Sbjct: 535 TANTQFMSASY-FPTG--VQVITCGSDGRIIYWMVYN---GALIRELTA-SKKSSVNCLA 587
Query: 366 HHKKLRVYCMVAHSLQPHL--VATGTNVGVIISEFDPRSLP-AVAPLPTP--SGSRDHSA 420
++ + V LQ L +G VG I SE + A +P T +GS D S
Sbjct: 588 INETGDYFITVGSDLQVKLWDYNSGAVVG-IGSEHASSVISCAYSPCMTMFVTGSTDGSL 646
Query: 421 V 421
+
Sbjct: 647 I 647
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1081 976 0.00097 122 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 633 (67 KB)
Total size of DFA: 481 KB (2223 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.57u 0.13s 73.70t Elapsed: 00:00:04
Total cpu time: 73.57u 0.13s 73.70t Elapsed: 00:00:04
Start: Tue May 21 20:41:43 2013 End: Tue May 21 20:41:47 2013