BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001416
(1081 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
K F +D++ I HPT PW++T S V +WN+E
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE 43
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG 52
F D I I +HPT P++++ V +WNWE+ + + G
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
K F +D++ I HPT PW++T S V +WN+E
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE 43
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG 52
F D I I +HPT P++++ V +WNWE+ + + G
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222
D+ + C++F V GS D ++V S ++ K +R G H G + +
Sbjct: 118 DDHVITCLQFCGNRIVS-------GSDDNTLKVWSAVTGKCLRTLVG-HTGGV-----WS 164
Query: 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL--SRVMGGSPQ 280
+ + +++SG +D L +W+A+ G+ +L H V + L RV+ GS
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAETGECIH------TLYGHTSTVRCMHLHEKRVVSGSR- 217
Query: 281 LITIGADKTLAIWD 294
D TL +WD
Sbjct: 218 ------DATLRVWD 225
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269
GH + + F + +VSG D L +WSA G+ R LV H GGV +
Sbjct: 116 GHDDHVITCLQFCGNR----IVSGSDDNTLKVWSAVTGKCLRTLV------GHTGGVWSS 165
Query: 270 ELSRVMGGSPQLITIGADKTLAIWD 294
++ + +I+ D+TL +W+
Sbjct: 166 QMRDNI-----IISGSTDRTLKVWN 185
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
K F +D++ I HPT PW++T S V +WN+E
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE 43
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG 52
F D I I +HPT P++++ V +WNWE+ + + G
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE 41
K F +D++ I HPT PW++T S V +WN+E
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE 43
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG 52
F D I I +HPT P++++ V +WNWE+ + + G
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239
D + S D I+V + + + VR GHK I+CL + L+VSG SD +
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQY-----RDRLVVSGSSDNTI 318
Query: 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVS 297
LW + G R L+ H+ EL R + + I GA D + +WD V+
Sbjct: 319 RLWDIECGACLR------VLEGHE------ELVRCIRFDNKRIVSGAYDGKIKVWDLVA 365
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 45/174 (25%)
Query: 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMA 223
+K + C+++ D + G D I++ + + +R GH GS+ CL
Sbjct: 133 SKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--- 181
Query: 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPK----LSLKAHDGGVVA----------- 268
E ++++G SD + +W + G+ L+ L L+ ++G +V
Sbjct: 182 --DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 239
Query: 269 ------VELSRVMGG-----------SPQLITIGADKTLAIWDTVSFKELRRIK 305
+ L RV+ G +++ D+T+ +W+T + + +R +
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 216 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 270
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 271 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 23 AGHTKAVSSVK--FSPNGEWLAASS-ADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 74 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 36.6 bits (83), Expect = 0.082, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 230 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 284
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 285 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 37 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 87
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 88 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 213 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 267
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 268 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 20 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 70
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 71 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 212 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 266
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 267 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 19 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 69
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 70 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 214 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 268
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 269 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 21 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 71
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 72 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 218 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 272
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 273 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 25 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 75
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 76 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 213 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 267
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 268 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 20 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 70
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 71 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 209 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 263
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 264 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 16 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 66
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 67 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 219 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 273
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 274 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 26 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 76
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 77 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 219 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 273
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 274 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 26 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 76
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 77 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 219 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 273
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 274 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 26 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 76
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 77 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 237 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 291
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 292 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 44 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 94
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 95 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 235 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 289
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 290 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 42 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 92
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 93 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 23 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 74 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 216 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 270
Query: 250 SRELVPKL 257
++E+V KL
Sbjct: 271 TKEIVQKL 278
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 23 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 74 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D L+ +W+
Sbjct: 216 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL----Q 270
Query: 250 SRELVPKL 257
++E+V KL
Sbjct: 271 TKEIVQKL 278
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 43/243 (17%)
Query: 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
+ VAFG DG I+++ + + ++ GHK ++ + + G+ L+S D ++
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQ--FTADGKT-LISSSEDSVIQ 1028
Query: 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300
+W+ G + L+AH V L + +L++ D T+ +W+ ++ +
Sbjct: 1029 VWNWQTGD-------YVFLQAHQETVKDFRLLQ----DSRLLSWSFDGTVKVWNVITGRI 1077
Query: 301 LRRIKPVPKLACHS---VASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSS 357
R CH ++ A + K + IW+ + L PL EL
Sbjct: 1078 ER------DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD------LLSPLHELK- 1124
Query: 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV--IISEFDPRSLPAVAPLPTPSGS 415
H+ +R A SL L+ATG + G I + D + L + AP+ G+
Sbjct: 1125 -------GHNGCVRC---SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 416 RDH 418
H
Sbjct: 1175 ATH 1177
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 43/243 (17%)
Query: 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240
+ VAFG DG I+++ + + ++ GHK ++ + + G+ L+S D ++
Sbjct: 980 LEYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQ--FTADGKT-LISSSEDSVIQ 1035
Query: 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300
+W+ G + L+AH V L + +L++ D T+ +W+ ++ +
Sbjct: 1036 VWNWQTGD-------YVFLQAHQETVKDFRLLQ----DSRLLSWSFDGTVKVWNVITGRI 1084
Query: 301 LRRIKPVPKLACHS---VASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSS 357
R CH ++ A + K + IW+ + L PL EL
Sbjct: 1085 ER------DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD------LLSPLHELK- 1131
Query: 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV--IISEFDPRSLPAVAPLPTPSGS 415
H+ +R A SL L+ATG + G I + D + L + AP+ G+
Sbjct: 1132 -------GHNGCVRC---SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 416 RDH 418
H
Sbjct: 1182 ATH 1184
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249
D +++ K ++ YTG HK C+ + +G +VSG D ++ +W+
Sbjct: 216 DNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL----Q 270
Query: 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
++E+V KL G V +S + +I A DKT+ +W +
Sbjct: 271 TKEIVQKLQ------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 23 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 74 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 194 RVLSMISWKLVRRYTG---------GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244
R ++I WKL R T GH +S ++ ++S G+ L SG DG L LW
Sbjct: 36 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV--ISSDGQFAL-SGSWDGTLRLWDL 92
Query: 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296
G +R V H V++V S + Q+++ DKT+ +W+T+
Sbjct: 93 TTGTTTRRFV------GHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTL 135
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 157 IPKQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSI 215
IP++ L S F+S + D GS DG +R+ + + RR+ G K +
Sbjct: 54 IPQRALRGHS----HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL 109
Query: 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK--AHDGGVVAVELSR 273
S SS +VSG D + LW+ V K +++ +H V V S
Sbjct: 110 SVAF----SSDNRQIVSGSRDKTIKLWNTLG-------VCKYTVQDESHSEWVSCVRFSP 158
Query: 274 VMGGSPQLITIGADKTLAIWDTVSFK 299
+P +++ G DK + +W+ + K
Sbjct: 159 -NSSNPIIVSCGWDKLVKVWNLANCK 183
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCL 218
+ E ++ + C+ F S+ P++ D +++V ++ + KL + G H G L
Sbjct: 143 QDESHSEWVSCVRFSPNSSN---PIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGY---L 195
Query: 219 MTFMASSGEALLVSGGSDGLLILWSADHGQ 248
T S +L SGG DG +LW + G+
Sbjct: 196 NTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 194 RVLSMISWKLVRRYTG---------GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244
R ++I WKL R T GH +S ++ ++S G+ L SG DG L LW
Sbjct: 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV--ISSDGQFAL-SGSWDGTLRLWDL 115
Query: 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296
G +R V H V++V S + Q+++ DKT+ +W+T+
Sbjct: 116 TTGTTTRRFV------GHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTL 158
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 157 IPKQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSI 215
IP++ L S F+S + D GS DG +R+ + + RR+ G K +
Sbjct: 77 IPQRALRGHS----HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL 132
Query: 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK--AHDGGVVAVELSR 273
S SS +VSG D + LW+ V K +++ +H V V S
Sbjct: 133 SVAF----SSDNRQIVSGSRDKTIKLWNTLG-------VCKYTVQDESHSEWVSCVRFSP 181
Query: 274 VMGGSPQLITIGADKTLAIWDTVSFK 299
+P +++ G DK + +W+ + K
Sbjct: 182 -NSSNPIIVSCGWDKLVKVWNLANCK 206
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCL 218
+ E ++ + C+ F S+ P++ D +++V ++ + KL + G H G L
Sbjct: 166 QDESHSEWVSCVRFSPNSSN---PIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGY---L 218
Query: 219 MTFMASSGEALLVSGGSDGLLILWSADHGQ 248
T S +L SGG DG +LW + G+
Sbjct: 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268
GH ++S + + +GE L S +D L+ +W A G+ + ++ H G+
Sbjct: 23 AGHTKAVSSVK--FSPNGE-WLASSSADKLIKIWGAYDGKFEK------TISGHKLGISD 73
Query: 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305
V S S L++ DKTL IWD S K L+ +K
Sbjct: 74 VAWS---SDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
K ++ YTG HK C+ + +G +VSG D ++ +W+ ++E+V KL
Sbjct: 228 KCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL----QTKEIVQKLQ--- 279
Query: 262 HDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDT 295
G V +S + +I A DKT+ +W +
Sbjct: 280 ---GHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
P + S D ++V ++ + KL R GH G +S T S +L SGG DG+++L
Sbjct: 532 PTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVS---TVAVSPDGSLCASGGKDGVVLL 587
Query: 242 WSADHGQ 248
W G+
Sbjct: 588 WDLAEGK 594
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 194 RVLSMISWKLVR---------RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244
R S+I WKL + R GH + ++ ++S G+ L SG DG L LW
Sbjct: 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV--LSSDGQFAL-SGSWDGELRLWDL 459
Query: 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296
G +R V H V++V S + Q+++ D+T+ +W+T+
Sbjct: 460 AAGVSTRRFV------GHTKDVLSVAFSL---DNRQIVSASRDRTIKLWNTL 502
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PL+A S G+IR+++ I+ + ++ Y GH +I+ L LL+S D L L
Sbjct: 122 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK--FHPRDPNLLLSVSKDHALRL 178
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W+ Q + ++ H V++ + ++G ++++ G D +L +W S + +
Sbjct: 179 WNI---QTDTLVAIFGGVEGHRDEVLSADYD-LLG--EKIMSCGMDHSLKLWRINSKRMM 232
Query: 302 RRIK 305
IK
Sbjct: 233 NAIK 236
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 129 STKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188
ST R F+ C V+K + + +M G + + ++ + C F + S L+A GS
Sbjct: 672 STDDR-FIATCSVDKKVKI-WNSMTGELVHTYDEHSEQVNCCHFTNSSHH---LLLATGS 726
Query: 189 SDGVIRVLSMISWKLVRRYTGGHKGSIS-CLMTFMASSGEALLVSGGSDGLLILWSADHG 247
SD +++ + + K R GH S++ C S + LL S +DG L LW A
Sbjct: 727 SDCFLKLWDL-NQKECRNTMFGHTNSVNHCRF----SPDDKLLASCSADGTLKLWDATSA 781
Query: 248 QDSRELVPK 256
+ + + K
Sbjct: 782 NERKSINVK 790
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PL+A S G+IR+++ I+ + ++ Y GH +I+ L LL+S D L L
Sbjct: 85 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK--FHPRDPNLLLSVSKDHALRL 141
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W+ Q + ++ H V++ + ++G ++++ G D +L +W S + +
Sbjct: 142 WNI---QTDTLVAIFGGVEGHRDEVLSADYD-LLG--EKIMSCGMDHSLKLWRINSKRMM 195
Query: 302 RRIK 305
IK
Sbjct: 196 NAIK 199
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PL+A S G+IR+++ I+ + ++ Y GH +I+ L LL+S D L L
Sbjct: 86 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK--FHPRDPNLLLSVSKDHALRL 142
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W+ Q + ++ H V++ + ++G ++++ G D +L +W S + +
Sbjct: 143 WNI---QTDTLVAIFGGVEGHRDEVLSADYD-LLG--EKIMSCGMDHSLKLWRINSKRMM 196
Query: 302 RRIK 305
IK
Sbjct: 197 NAIK 200
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PL+A S G+IR+++ I+ + ++ Y GH +I+ L LL+S D L L
Sbjct: 85 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK--FHPRDPNLLLSVSKDHALRL 141
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W+ Q + ++ H V++ + ++G ++++ G D +L +W S + +
Sbjct: 142 WNI---QTDTLVAIFGGVEGHRDEVLSADYD-LLG--EKIMSCGMDHSLKLWRINSKRMM 195
Query: 302 RRIK 305
IK
Sbjct: 196 NAIK 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241
PL+A S G+IR+++ I+ + ++ Y GH +I+ L LL+S D L L
Sbjct: 81 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELK--FHPRDPNLLLSVSKDHALRL 137
Query: 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301
W+ Q + ++ H V++ + ++G ++++ G D +L +W S + +
Sbjct: 138 WNI---QTDTLVAIFGGVEGHRDEVLSADYD-LLG--EKIMSCGMDHSLKLWRINSKRMM 191
Query: 302 RRIK 305
IK
Sbjct: 192 NAIK 195
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 203 LVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
++R GH G ++ L T S+G+ LL+S D LI W G D + VP S K
Sbjct: 8 VLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG 63
Query: 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304
H V L+ ++ DKTL +WD + + +R
Sbjct: 64 HSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 203 LVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
++R GH G ++ L T S+G+ LL+S D LI W G D + VP S K
Sbjct: 2 VLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG 57
Query: 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304
H V L+ ++ DKTL +WD + + +R
Sbjct: 58 HSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRF 97
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 203 LVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
++R GH G ++ L T S+G+ LL+S D LI W G D + VP S K
Sbjct: 8 VLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG 63
Query: 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304
H V+ + ++ DKTL +WD + + +R
Sbjct: 64 HSH---IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 203 LVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
++R GH G ++ L T S+G+ LL+S D LI W G D + VP S K
Sbjct: 8 VLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG 63
Query: 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304
H V L+ ++ DKTL +WD + + +R
Sbjct: 64 HSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 203 LVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
++R GH G ++ L T S+G+ LL+S D LI W G D + VP S K
Sbjct: 8 VLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG 63
Query: 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304
H V L+ ++ DKTL +WD + + +R
Sbjct: 64 HSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 203 LVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261
++R GH G ++ L T S+G+ LL+S D LI W G D + VP S K
Sbjct: 8 VLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG 63
Query: 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304
H V L+ ++ DKTL +WD + + +R
Sbjct: 64 HSHIVQDCTLT---ADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 187 GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246
G+++G I+VL ++ L R H I+ L F SGEAL +S D L +WS
Sbjct: 112 GTTEGDIKVLDS-NFNLQREIDQAHVSEITKLKFF--PSGEAL-ISSSQDMQLKIWSVKD 167
Query: 247 GQDSRELV 254
G + R L+
Sbjct: 168 GSNPRTLI 175
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 187 GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246
G+++G I+VL ++ L R H I+ L F SGEAL +S D L +WS
Sbjct: 115 GTTEGDIKVLDS-NFNLQREIDQAHVSEITKLKFF--PSGEAL-ISSSQDMQLKIWSVKD 170
Query: 247 GQDSRELV 254
G + R L+
Sbjct: 171 GSNPRTLI 178
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 117 SNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172
++T GF P+ +F + C ++I LD+ T G+++ +Q + ++ F
Sbjct: 42 GDMTRGFLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELLEQMIKKADVMVENF 97
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289
V+GG+D L+ +W + D++ V + +L+ H V V S + L ++ D+T
Sbjct: 173 FVTGGADNLVKIWK--YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 290 LAIW 293
IW
Sbjct: 231 CIIW 234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRXXXXXXXXXVSNVTSGFASPPPSTKGRHFLV 137
P+EA+ S YDD VR W+ + + V N G K
Sbjct: 163 PSEALLASSS-----YDDTVRIWKDYDD----DWECVAVLNGHEGTVWSSDFDKTEGVFR 213
Query: 138 ICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFG--------SS 189
+C + + + G D E D + VC L V VA+G +
Sbjct: 214 LCSGSDDSTVRVWKYMGDD----EDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA 269
Query: 190 DGVIRVLSMI--SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245
DGV+ V + WK+ + H ++ ++ +G+ +L +GG DG++ WS +
Sbjct: 270 DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLK--AHDGGVVAVELSRVMGGSPQLITIG 285
+L S G DG ++L++ G + + SLK AH G V + S ++ +
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTG-VFEDDSLKNVAHSGSVFGLTWSP---DGTKIASAS 258
Query: 286 ADKTLAIWDTVSFKELRRI 304
ADKT+ IW+ + K + I
Sbjct: 259 ADKTIKIWNVATLKVEKTI 277
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238
G VPL F G ++ ++ W+ TGG + + S V S
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 324
Query: 239 LILWS-------ADHGQDSRELV----PKLSLKAHDGGVVAVELSRVMGGSPQLITI--- 284
ILWS + HG +LV P ++ A G + LS M SP T+
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM--SPDGATVASA 382
Query: 285 GADKTLAIWDTVSFKELRR 303
AD+TL +W RR
Sbjct: 383 AADETLRLWRCFELDPARR 401
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238
G VPL F G ++ ++ W+ TGG + + S V S
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 335
Query: 239 LILWS-------ADHGQDSRELV----PKLSLKAHDGGVVAVELSRVMGGSPQLITI--- 284
ILWS + HG +LV P ++ A G + LS M SP T+
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM--SPDGATVASA 393
Query: 285 GADKTLAIWDTVSFKELRR 303
AD+TL +W RR
Sbjct: 394 AADETLRLWRCFELDPARR 412
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289
V+GG+D L+ +W + D++ V + +L+ H V V S + L ++ D+T
Sbjct: 175 FVTGGADNLVKIWK--YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232
Query: 290 LAIW 293
IW
Sbjct: 233 CIIW 236
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK 333
V+ +P+++T+G D + ++ + +R I H+V R P + + +
Sbjct: 156 VVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVT---FLRTPEILTVNSIG 212
Query: 334 DSHIWAIEHPTYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSLQPHLVATGTNVG 392
IW P Q+L+ ++ ++C+ H Q H+VATG G
Sbjct: 213 QLKIWDFRQQGNE-------------PSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDG 259
Query: 393 VI 394
++
Sbjct: 260 ML 261
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289
V+GG+D L+ +W + D++ V + +L+ H V V S + L ++ D+T
Sbjct: 173 FVTGGADNLVKIWK--YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
Query: 290 LAIW 293
IW
Sbjct: 231 CIIW 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,075,590
Number of Sequences: 62578
Number of extensions: 1104207
Number of successful extensions: 2788
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2639
Number of HSP's gapped (non-prelim): 190
length of query: 1081
length of database: 14,973,337
effective HSP length: 109
effective length of query: 972
effective length of database: 8,152,335
effective search space: 7924069620
effective search space used: 7924069620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)