Query 001416
Match_columns 1081
No_of_seqs 873 out of 4288
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 2E-97 4E-102 812.6 35.5 747 4-1079 6-783 (794)
2 KOG0292 Vesicle coat complex C 100.0 3.5E-62 7.6E-67 552.5 41.6 686 4-1040 2-753 (1202)
3 KOG1023 Natriuretic peptide re 100.0 2.3E-62 5E-67 556.0 -9.7 340 690-1067 1-375 (484)
4 KOG0271 Notchless-like WD40 re 100.0 2.1E-41 4.5E-46 353.7 27.3 325 6-399 110-479 (480)
5 KOG0286 G-protein beta subunit 100.0 2.1E-35 4.5E-40 300.0 31.2 287 4-399 48-343 (343)
6 KOG0271 Notchless-like WD40 re 100.0 6.2E-36 1.4E-40 312.8 25.6 296 52-409 113-447 (480)
7 PF04053 Coatomer_WDAD: Coatom 100.0 9.3E-37 2E-41 350.3 14.4 376 482-1055 36-443 (443)
8 KOG0272 U4/U6 small nuclear ri 100.0 5.9E-35 1.3E-39 310.0 24.5 278 9-339 173-458 (459)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-32 2.8E-37 292.3 20.5 269 61-399 184-458 (459)
10 KOG0291 WD40-repeat-containing 100.0 1.1E-29 2.5E-34 286.0 41.1 430 3-511 137-614 (893)
11 KOG0315 G-protein beta subunit 100.0 1E-30 2.2E-35 260.0 27.3 282 25-409 12-296 (311)
12 KOG0318 WD40 repeat stress pro 100.0 2.5E-28 5.5E-33 265.6 48.3 439 4-534 52-548 (603)
13 KOG0645 WD40 repeat protein [G 100.0 4.1E-30 8.9E-35 259.1 31.3 296 2-400 5-310 (312)
14 KOG0295 WD40 repeat-containing 100.0 6.1E-31 1.3E-35 274.8 25.1 288 5-400 102-405 (406)
15 KOG0279 G protein beta subunit 100.0 7.7E-30 1.7E-34 258.3 30.9 302 2-401 6-313 (315)
16 KOG0319 WD40-repeat-containing 100.0 4.1E-30 8.9E-35 289.9 30.5 350 4-410 97-544 (775)
17 KOG0319 WD40-repeat-containing 100.0 4.1E-30 8.8E-35 289.9 27.0 349 4-399 185-617 (775)
18 KOG0291 WD40-repeat-containing 100.0 1.4E-28 3.1E-33 277.2 37.7 350 5-408 259-619 (893)
19 KOG0284 Polyadenylation factor 100.0 1E-30 2.2E-35 276.5 18.1 277 11-399 96-378 (464)
20 KOG0273 Beta-transducin family 100.0 8.1E-29 1.8E-33 266.5 31.2 326 5-401 173-523 (524)
21 KOG0296 Angio-associated migra 100.0 1.8E-28 3.8E-33 256.7 29.7 334 4-400 57-397 (399)
22 KOG0318 WD40 repeat stress pro 100.0 8.9E-27 1.9E-31 253.7 41.6 452 15-536 22-507 (603)
23 KOG0285 Pleiotropic regulator 100.0 1.4E-28 3E-33 255.8 25.5 292 4-400 144-438 (460)
24 KOG0263 Transcription initiati 100.0 4.8E-29 1E-33 284.9 22.6 319 5-388 372-703 (707)
25 KOG0279 G protein beta subunit 100.0 1.2E-27 2.6E-32 242.5 27.4 254 113-410 9-271 (315)
26 KOG0276 Vesicle coat complex C 100.0 3E-27 6.6E-32 261.2 32.5 241 4-334 48-289 (794)
27 KOG0292 Vesicle coat complex C 100.0 2.3E-26 5E-31 262.5 37.0 413 4-534 44-507 (1202)
28 cd00200 WD40 WD40 domain, foun 100.0 2.5E-26 5.5E-31 252.9 35.5 285 4-399 2-289 (289)
29 KOG0263 Transcription initiati 100.0 1.7E-27 3.8E-32 272.2 25.4 243 120-405 378-653 (707)
30 KOG0281 Beta-TrCP (transducin 100.0 2.3E-28 4.9E-33 252.8 16.3 278 9-343 195-479 (499)
31 KOG0265 U5 snRNP-specific prot 100.0 1.4E-26 3E-31 236.9 27.9 286 4-339 40-334 (338)
32 KOG0293 WD40 repeat-containing 100.0 3.4E-27 7.4E-32 249.5 22.5 291 4-401 217-513 (519)
33 KOG0273 Beta-transducin family 100.0 4E-26 8.7E-31 245.8 30.4 270 93-409 199-490 (524)
34 KOG0266 WD40 repeat-containing 100.0 4E-26 8.6E-31 269.5 31.6 290 6-401 153-454 (456)
35 KOG0282 mRNA splicing factor [ 100.0 2.2E-27 4.8E-32 256.7 18.5 286 4-339 207-503 (503)
36 KOG0286 G-protein beta subunit 99.9 7E-26 1.5E-30 230.8 27.5 251 113-407 49-309 (343)
37 PLN00181 protein SPA1-RELATED; 99.9 2E-25 4.3E-30 283.0 37.8 310 7-400 479-792 (793)
38 KOG0285 Pleiotropic regulator 99.9 1.8E-26 3.9E-31 240.2 22.4 254 112-412 144-400 (460)
39 KOG0315 G-protein beta subunit 99.9 1.4E-25 3E-30 223.6 27.5 268 5-377 34-308 (311)
40 KOG0313 Microtubule binding pr 99.9 6.7E-26 1.4E-30 238.4 25.5 284 9-341 103-416 (423)
41 KOG0281 Beta-TrCP (transducin 99.9 4.7E-27 1E-31 243.1 16.4 265 93-409 215-485 (499)
42 KOG0284 Polyadenylation factor 99.9 3.3E-27 7.1E-32 250.0 15.3 248 119-409 95-345 (464)
43 KOG0316 Conserved WD40 repeat- 99.9 4.4E-25 9.6E-30 218.2 27.0 281 3-339 9-297 (307)
44 KOG0295 WD40 repeat-containing 99.9 3E-26 6.5E-31 239.8 19.7 249 4-295 143-405 (406)
45 KOG0306 WD40-repeat-containing 99.9 5.3E-25 1.1E-29 248.5 28.8 283 5-401 367-664 (888)
46 KOG0306 WD40-repeat-containing 99.9 2.7E-24 6E-29 242.7 32.9 278 93-413 342-634 (888)
47 KOG0275 Conserved WD40 repeat- 99.9 9.6E-26 2.1E-30 231.2 17.4 294 9-399 211-507 (508)
48 KOG0296 Angio-associated migra 99.9 4.9E-24 1.1E-28 223.5 27.6 287 4-341 99-398 (399)
49 KOG0265 U5 snRNP-specific prot 99.9 3.1E-24 6.8E-29 219.7 23.9 279 51-394 44-332 (338)
50 KOG0266 WD40 repeat-containing 99.9 1.3E-23 2.7E-28 248.3 29.2 253 115-409 154-417 (456)
51 KOG0313 Microtubule binding pr 99.9 1.4E-23 3E-28 221.1 24.8 261 93-400 123-417 (423)
52 KOG0645 WD40 repeat protein [G 99.9 5E-23 1.1E-27 208.2 26.9 240 112-399 7-259 (312)
53 KOG0643 Translation initiation 99.9 4.2E-23 9.1E-28 208.0 24.8 292 3-341 2-317 (327)
54 KOG0293 WD40 repeat-containing 99.9 4.3E-24 9.4E-29 226.2 18.1 251 4-297 262-514 (519)
55 KOG2106 Uncharacterized conser 99.9 1.2E-21 2.6E-26 212.6 34.8 336 3-399 96-475 (626)
56 KOG0277 Peroxisomal targeting 99.9 5.5E-23 1.2E-27 205.8 22.7 242 122-400 62-308 (311)
57 KOG0641 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 194.3 28.9 310 9-400 30-348 (350)
58 KOG0282 mRNA splicing factor [ 99.9 1.8E-23 3.9E-28 226.6 19.4 249 113-399 208-503 (503)
59 PLN00181 protein SPA1-RELATED; 99.9 1E-21 2.2E-26 249.3 37.4 274 92-401 455-738 (793)
60 KOG2096 WD40 repeat protein [G 99.9 2.1E-22 4.5E-27 207.2 24.8 299 2-393 77-396 (420)
61 KOG0278 Serine/threonine kinas 99.9 4.5E-23 9.7E-28 205.6 19.2 281 6-342 9-298 (334)
62 KOG0772 Uncharacterized conser 99.9 1E-22 2.2E-27 221.3 23.4 304 5-402 161-489 (641)
63 KOG0274 Cdc4 and related F-box 99.9 2.7E-22 5.8E-27 236.1 27.8 275 6-343 202-484 (537)
64 KOG2048 WD40 repeat protein [G 99.9 2.6E-20 5.6E-25 209.6 41.9 285 4-337 18-313 (691)
65 KOG1407 WD40 repeat protein [F 99.9 2.9E-22 6.3E-27 201.5 23.2 271 5-330 14-288 (313)
66 KOG0640 mRNA cleavage stimulat 99.9 2.1E-22 4.6E-27 206.2 22.1 311 5-399 106-424 (430)
67 KOG0283 WD40 repeat-containing 99.9 2.8E-22 6E-27 231.9 26.0 210 155-403 360-578 (712)
68 KOG0300 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 205.9 22.3 328 4-402 141-477 (481)
69 KOG0275 Conserved WD40 repeat- 99.9 3.4E-23 7.5E-28 212.5 15.8 245 120-403 213-469 (508)
70 KOG0310 Conserved WD40 repeat- 99.9 4.2E-22 9.2E-27 216.5 24.1 273 11-337 26-303 (487)
71 KOG0316 Conserved WD40 repeat- 99.9 6E-22 1.3E-26 196.1 21.7 252 114-412 12-268 (307)
72 KOG4171 Adenylate/guanylate ki 99.9 1.1E-24 2.5E-29 249.4 2.1 114 954-1069 398-522 (671)
73 cd00200 WD40 WD40 domain, foun 99.9 4.6E-21 9.9E-26 210.9 30.3 242 4-339 44-289 (289)
74 KOG0973 Histone transcription 99.9 8.5E-22 1.8E-26 233.1 24.9 305 7-402 8-356 (942)
75 KOG0305 Anaphase promoting com 99.9 2.7E-21 5.8E-26 219.1 27.1 238 120-403 217-463 (484)
76 KOG0268 Sof1-like rRNA process 99.9 1.2E-22 2.5E-27 212.6 14.4 283 5-342 60-346 (433)
77 KOG0274 Cdc4 and related F-box 99.9 1.3E-21 2.8E-26 230.3 25.0 243 7-304 245-490 (537)
78 PTZ00421 coronin; Provisional 99.9 1.7E-20 3.8E-25 220.7 32.2 206 159-404 70-293 (493)
79 KOG0264 Nucleosome remodeling 99.9 2.1E-21 4.5E-26 210.0 21.5 261 120-401 124-404 (422)
80 KOG0308 Conserved WD40 repeat- 99.9 1.8E-21 3.8E-26 217.4 21.3 247 9-298 19-287 (735)
81 KOG0288 WD40 repeat protein Ti 99.9 4.9E-22 1.1E-26 211.4 15.8 286 5-398 169-458 (459)
82 KOG1408 WD40 repeat protein [F 99.9 1.7E-19 3.6E-24 202.2 36.0 456 5-533 72-658 (1080)
83 KOG0299 U3 snoRNP-associated p 99.9 1.2E-20 2.6E-25 203.8 25.3 310 4-399 135-454 (479)
84 KOG0301 Phospholipase A2-activ 99.9 1.1E-20 2.3E-25 212.8 25.7 274 5-342 8-289 (745)
85 PTZ00421 coronin; Provisional 99.9 5.7E-20 1.2E-24 216.4 33.1 294 10-400 19-330 (493)
86 KOG0289 mRNA splicing factor [ 99.9 1.9E-20 4.2E-25 200.2 25.8 282 12-399 220-504 (506)
87 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-19 2.6E-24 188.5 30.9 287 3-341 6-303 (311)
88 KOG1332 Vesicle coat complex C 99.9 3.3E-21 7.2E-26 192.1 17.8 263 1-341 1-286 (299)
89 PTZ00420 coronin; Provisional 99.9 7.5E-20 1.6E-24 216.1 32.1 242 4-326 67-318 (568)
90 KOG0310 Conserved WD40 repeat- 99.9 2.6E-21 5.7E-26 210.4 18.1 241 120-402 26-269 (487)
91 KOG0277 Peroxisomal targeting 99.9 3.1E-21 6.7E-26 193.4 17.0 242 11-295 60-308 (311)
92 KOG0647 mRNA export protein (c 99.9 3.8E-20 8.2E-25 190.0 24.7 276 10-391 26-315 (347)
93 KOG1408 WD40 repeat protein [F 99.9 3.7E-20 8E-25 207.4 26.4 340 14-401 327-713 (1080)
94 KOG1539 WD repeat protein [Gen 99.9 2.8E-19 6.1E-24 205.0 34.1 332 4-401 195-606 (910)
95 KOG0308 Conserved WD40 repeat- 99.9 9.2E-21 2E-25 211.7 20.7 269 93-401 45-327 (735)
96 KOG0264 Nucleosome remodeling 99.9 2E-20 4.4E-25 202.4 21.9 262 5-296 118-404 (422)
97 KOG0643 Translation initiation 99.9 6.2E-20 1.3E-24 185.3 23.2 260 114-398 5-314 (327)
98 KOG1063 RNA polymerase II elon 99.9 6.4E-20 1.4E-24 206.4 25.2 347 3-403 183-650 (764)
99 KOG2055 WD40 repeat protein [G 99.9 5.1E-20 1.1E-24 198.6 23.1 289 11-401 213-512 (514)
100 KOG1407 WD40 repeat protein [F 99.9 8.7E-20 1.9E-24 183.8 22.9 234 6-287 59-293 (313)
101 KOG0973 Histone transcription 99.9 8.1E-20 1.8E-24 216.5 26.2 255 113-403 6-314 (942)
102 PTZ00420 coronin; Provisional 99.8 7.4E-19 1.6E-23 207.7 33.5 244 94-380 53-317 (568)
103 KOG0640 mRNA cleavage stimulat 99.8 8.5E-21 1.8E-25 194.5 14.0 257 3-341 164-426 (430)
104 KOG0305 Anaphase promoting com 99.8 1.3E-19 2.7E-24 205.6 24.3 238 11-342 217-462 (484)
105 KOG1539 WD repeat protein [Gen 99.8 9.4E-19 2E-23 200.8 31.5 354 4-399 237-646 (910)
106 KOG0192 Tyrosine kinase specif 99.8 9.5E-24 2.1E-28 237.8 -9.8 232 659-942 59-303 (362)
107 KOG0301 Phospholipase A2-activ 99.8 2.7E-19 5.9E-24 201.6 25.7 252 93-402 33-289 (745)
108 KOG1063 RNA polymerase II elon 99.8 3.9E-18 8.5E-23 192.1 34.5 350 3-401 46-437 (764)
109 KOG0641 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 171.5 25.9 255 5-341 83-349 (350)
110 KOG0289 mRNA splicing factor [ 99.8 1.7E-19 3.6E-24 193.1 21.9 241 4-335 254-498 (506)
111 KOG0278 Serine/threonine kinas 99.8 1.6E-20 3.6E-25 187.4 12.8 247 4-300 52-301 (334)
112 KOG0646 WD40 repeat protein [G 99.8 3E-19 6.5E-24 193.5 23.2 229 163-410 80-316 (476)
113 KOG0650 WD40 repeat nucleolar 99.8 1.6E-19 3.4E-24 199.8 20.7 307 5-338 394-732 (733)
114 KOG1332 Vesicle coat complex C 99.8 1.8E-19 3.9E-24 179.8 19.1 252 120-400 11-285 (299)
115 KOG0283 WD40 repeat-containing 99.8 1.3E-19 2.8E-24 210.0 20.0 211 162-407 265-538 (712)
116 KOG0269 WD40 repeat-containing 99.8 1.9E-19 4.2E-24 204.9 20.8 235 124-394 91-334 (839)
117 KOG0647 mRNA export protein (c 99.8 1.7E-18 3.6E-23 178.1 25.1 262 119-411 26-291 (347)
118 KOG0300 WD40 repeat-containing 99.8 3.1E-19 6.6E-24 183.3 18.7 221 156-414 140-400 (481)
119 KOG0639 Transducin-like enhanc 99.8 4.4E-19 9.6E-24 192.1 19.9 260 94-398 439-701 (705)
120 KOG1036 Mitotic spindle checkp 99.8 3.1E-18 6.7E-23 177.1 24.9 270 10-332 12-292 (323)
121 KOG1036 Mitotic spindle checkp 99.8 4.1E-18 9E-23 176.1 25.6 257 120-412 13-273 (323)
122 KOG0639 Transducin-like enhanc 99.8 7.2E-19 1.6E-23 190.5 20.7 280 7-340 415-703 (705)
123 KOG0268 Sof1-like rRNA process 99.8 1.6E-19 3.5E-24 189.2 15.1 277 52-403 64-347 (433)
124 KOG0299 U3 snoRNP-associated p 99.8 7.7E-19 1.7E-23 189.9 20.7 251 120-401 142-410 (479)
125 KOG0294 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 179.0 21.3 243 4-298 36-283 (362)
126 KOG1446 Histone H3 (Lys4) meth 99.8 1.2E-17 2.6E-22 173.8 27.1 251 120-412 14-273 (311)
127 KOG4283 Transcription-coupled 99.8 3.8E-18 8.3E-23 174.2 22.5 310 6-400 38-364 (397)
128 KOG0302 Ribosome Assembly prot 99.8 1.5E-18 3.3E-23 182.9 19.9 269 7-339 147-436 (440)
129 KOG0772 Uncharacterized conser 99.8 1.7E-18 3.6E-23 188.7 20.0 266 117-412 164-456 (641)
130 KOG0288 WD40 repeat protein Ti 99.8 1.2E-18 2.6E-23 185.8 17.5 242 4-338 212-458 (459)
131 KOG2048 WD40 repeat protein [G 99.8 8.3E-17 1.8E-21 181.6 33.1 272 93-402 45-320 (691)
132 KOG1274 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 192.8 27.2 269 8-331 10-287 (933)
133 KOG4328 WD40 protein [Function 99.8 8.1E-18 1.7E-22 181.7 22.7 300 5-399 180-493 (498)
134 KOG2919 Guanine nucleotide-bin 99.8 1.9E-17 4.1E-22 171.4 23.6 291 13-342 51-368 (406)
135 KOG0294 WD40 repeat-containing 99.8 2E-17 4.3E-22 171.1 23.3 242 114-403 38-283 (362)
136 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-17 3E-22 180.6 22.8 292 28-380 7-304 (673)
137 KOG0269 WD40 repeat-containing 99.8 1.4E-18 2.9E-23 198.1 14.7 240 14-297 90-341 (839)
138 KOG2106 Uncharacterized conser 99.8 2.3E-16 5E-21 171.8 30.9 353 5-400 239-625 (626)
139 KOG4721 Serine/threonine prote 99.8 1.3E-20 2.8E-25 208.2 -2.1 254 610-943 102-369 (904)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4E-16 8.7E-21 174.9 33.9 270 23-342 1-280 (300)
141 KOG0646 WD40 repeat protein [G 99.8 1E-17 2.3E-22 181.6 19.4 230 11-325 81-330 (476)
142 KOG0267 Microtubule severing p 99.8 9.8E-19 2.1E-23 197.7 10.2 210 94-335 49-259 (825)
143 KOG2445 Nuclear pore complex c 99.8 2.2E-16 4.7E-21 162.9 25.9 275 115-401 9-318 (361)
144 KOG2445 Nuclear pore complex c 99.8 1.5E-16 3.3E-21 164.0 24.6 259 8-296 10-318 (361)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.6E-16 9.9E-21 174.4 30.8 264 5-324 25-300 (300)
146 KOG1274 WD40 repeat protein [G 99.7 3E-16 6.5E-21 182.6 27.1 245 120-402 13-263 (933)
147 KOG0302 Ribosome Assembly prot 99.7 9.4E-17 2E-21 169.5 19.4 222 155-394 202-433 (440)
148 KOG0267 Microtubule severing p 99.7 2.4E-18 5.2E-23 194.6 7.6 230 120-393 28-261 (825)
149 KOG1007 WD repeat protein TSSC 99.7 1.6E-15 3.4E-20 155.0 24.7 278 93-394 38-355 (370)
150 KOG0321 WD40 repeat-containing 99.7 5.3E-16 1.1E-20 173.7 22.5 285 87-401 66-391 (720)
151 KOG2096 WD40 repeat protein [G 99.7 2.9E-15 6.4E-20 154.9 26.0 214 157-401 79-308 (420)
152 KOG0650 WD40 repeat nucleolar 99.7 8.6E-16 1.9E-20 170.6 22.1 291 51-398 397-732 (733)
153 KOG4378 Nuclear protein COP1 [ 99.7 5.5E-16 1.2E-20 168.3 19.6 269 94-407 11-286 (673)
154 KOG1273 WD40 repeat protein [G 99.7 2.3E-15 5E-20 155.5 23.1 284 14-342 26-323 (405)
155 KOG4283 Transcription-coupled 99.7 3.2E-15 6.9E-20 153.1 23.8 210 120-343 43-278 (397)
156 KOG1007 WD repeat protein TSSC 99.7 6E-16 1.3E-20 158.1 18.3 204 121-338 124-356 (370)
157 KOG1034 Transcriptional repres 99.7 1.3E-15 2.7E-20 158.6 19.9 303 5-341 32-381 (385)
158 KOG1517 Guanine nucleotide bin 99.7 2.3E-15 5E-20 176.4 23.9 309 7-401 1060-1381(1387)
159 KOG0197 Tyrosine kinases [Sign 99.7 4.8E-19 1E-23 198.7 -6.3 228 659-942 224-461 (468)
160 KOG0270 WD40 repeat-containing 99.7 4.6E-15 1E-19 160.3 24.3 228 93-342 200-450 (463)
161 KOG1273 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 155.9 20.0 247 123-405 26-326 (405)
162 KOG0270 WD40 repeat-containing 99.7 1.4E-15 3E-20 164.3 19.4 236 135-406 194-454 (463)
163 KOG0321 WD40 repeat-containing 99.7 3.1E-15 6.8E-20 167.6 21.2 252 4-342 93-392 (720)
164 KOG0307 Vesicle coat complex C 99.7 3.1E-16 6.7E-21 187.1 13.8 248 120-403 64-329 (1049)
165 KOG4227 WD40 repeat protein [G 99.7 3.7E-15 8E-20 157.3 18.8 326 3-402 48-388 (609)
166 KOG1445 Tumor-specific antigen 99.7 2.8E-14 6E-19 158.8 25.9 149 266-434 630-785 (1012)
167 COG2319 FOG: WD40 repeat [Gene 99.6 6.8E-13 1.5E-17 154.2 38.9 330 6-405 60-404 (466)
168 KOG4328 WD40 protein [Function 99.6 6.1E-15 1.3E-19 159.7 19.0 260 120-409 186-458 (498)
169 KOG0307 Vesicle coat complex C 99.6 7.4E-16 1.6E-20 183.8 13.2 204 120-343 116-329 (1049)
170 KOG0290 Conserved WD40 repeat- 99.6 2.6E-14 5.6E-19 146.5 21.1 255 122-405 46-322 (364)
171 KOG2055 WD40 repeat protein [G 99.6 2.2E-14 4.8E-19 155.5 20.9 250 11-341 257-512 (514)
172 KOG1034 Transcriptional repres 99.6 2E-14 4.3E-19 149.8 18.9 253 120-400 89-382 (385)
173 KOG0303 Actin-binding protein 99.6 2E-14 4.3E-19 152.9 19.1 212 156-405 73-298 (472)
174 KOG1963 WD40 repeat protein [G 99.6 1.2E-12 2.6E-17 153.0 35.0 233 2-246 48-323 (792)
175 KOG0193 Serine/threonine prote 99.6 1.5E-17 3.3E-22 187.2 -5.6 229 667-942 417-653 (678)
176 KOG0322 G-protein beta subunit 99.6 1.4E-14 3E-19 146.7 15.1 290 4-340 7-322 (323)
177 KOG1188 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 146.7 19.7 243 135-400 86-345 (376)
178 KOG1240 Protein kinase contain 99.6 2.1E-13 4.6E-18 162.8 26.0 357 4-399 1041-1431(1431)
179 KOG0649 WD40 repeat protein [G 99.6 1.2E-12 2.6E-17 131.1 24.9 247 12-341 11-274 (325)
180 KOG1524 WD40 repeat-containing 99.6 1.9E-13 4.1E-18 150.1 20.8 206 133-395 76-281 (737)
181 KOG1009 Chromatin assembly com 99.6 1.5E-13 3.3E-18 147.1 18.9 291 11-394 13-366 (434)
182 KOG0644 Uncharacterized conser 99.5 2.1E-14 4.5E-19 164.8 12.0 278 2-401 181-468 (1113)
183 KOG1538 Uncharacterized conser 99.5 5.2E-13 1.1E-17 149.5 22.6 269 13-341 14-293 (1081)
184 KOG0290 Conserved WD40 repeat- 99.5 9.6E-13 2.1E-17 135.1 22.6 286 12-334 45-356 (364)
185 KOG1188 WD40 repeat protein [G 99.5 1.4E-13 3.1E-18 144.4 16.8 263 3-296 62-346 (376)
186 KOG0194 Protein tyrosine kinas 99.5 3.7E-16 8E-21 178.6 -3.6 221 667-942 189-420 (474)
187 KOG2919 Guanine nucleotide-bin 99.5 2.2E-13 4.7E-18 141.6 15.8 230 21-289 121-363 (406)
188 KOG1538 Uncharacterized conser 99.5 3.5E-13 7.7E-18 150.9 18.6 246 122-400 14-292 (1081)
189 KOG0642 Cell-cycle nuclear pro 99.5 1.4E-13 3.1E-18 153.0 15.0 258 6-304 289-569 (577)
190 KOG1334 WD40 repeat protein [G 99.5 1.4E-13 3E-18 150.2 14.2 300 4-341 135-466 (559)
191 KOG0649 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 129.9 20.7 233 123-399 13-272 (325)
192 COG2319 FOG: WD40 repeat [Gene 99.5 1.6E-10 3.6E-15 134.1 39.0 328 4-402 101-443 (466)
193 KOG1963 WD40 repeat protein [G 99.5 9.6E-12 2.1E-16 145.6 27.8 294 9-342 203-539 (792)
194 PF07714 Pkinase_Tyr: Protein 99.5 2E-17 4.3E-22 182.0 -19.5 224 663-939 27-259 (259)
195 KOG0642 Cell-cycle nuclear pro 99.5 7.6E-13 1.6E-17 147.3 16.2 213 160-403 290-563 (577)
196 PRK11028 6-phosphogluconolacto 99.5 4.7E-11 1E-15 136.3 30.8 277 93-401 10-304 (330)
197 PHA02988 hypothetical protein; 99.5 7.6E-16 1.6E-20 171.7 -8.9 227 660-942 39-279 (283)
198 KOG1587 Cytoplasmic dynein int 99.4 9.5E-12 2.1E-16 146.0 24.7 274 94-402 221-517 (555)
199 KOG1009 Chromatin assembly com 99.4 5.6E-12 1.2E-16 135.3 19.7 166 120-303 13-202 (434)
200 KOG0644 Uncharacterized conser 99.4 1.4E-13 3.1E-18 158.0 8.1 228 156-409 182-434 (1113)
201 KOG0303 Actin-binding protein 99.4 2.8E-12 6E-17 136.8 17.0 217 6-300 76-298 (472)
202 KOG1587 Cytoplasmic dynein int 99.4 9.4E-12 2E-16 146.0 22.9 251 11-297 242-517 (555)
203 KOG0322 G-protein beta subunit 99.4 2.9E-12 6.3E-17 130.1 15.8 248 120-400 14-322 (323)
204 KOG2139 WD40 repeat protein [G 99.4 3.9E-11 8.5E-16 126.9 23.1 197 163-394 97-305 (445)
205 KOG1272 WD40-repeat-containing 99.4 2.2E-12 4.8E-17 140.2 12.9 272 13-394 131-403 (545)
206 KOG1523 Actin-related protein 99.4 3.5E-11 7.6E-16 125.7 21.0 220 164-403 10-238 (361)
207 KOG1445 Tumor-specific antigen 99.4 6.4E-12 1.4E-16 140.3 14.8 228 141-402 602-845 (1012)
208 KOG1310 WD40 repeat protein [G 99.4 1.3E-11 2.7E-16 136.3 16.8 241 159-409 45-311 (758)
209 KOG1523 Actin-related protein 99.3 6.8E-11 1.5E-15 123.5 20.2 252 120-399 10-278 (361)
210 KOG4497 Uncharacterized conser 99.3 2E-10 4.3E-15 120.0 23.5 312 16-394 13-426 (447)
211 KOG0771 Prolactin regulatory e 99.3 1.1E-11 2.4E-16 134.2 14.6 198 15-297 148-355 (398)
212 PRK11028 6-phosphogluconolacto 99.3 6.7E-10 1.5E-14 126.8 30.2 251 10-296 33-304 (330)
213 KOG4497 Uncharacterized conser 99.3 2.8E-11 6.1E-16 126.2 16.3 347 125-536 13-381 (447)
214 PTZ00283 serine/threonine prot 99.3 3.9E-14 8.5E-19 169.8 -6.0 272 663-987 56-361 (496)
215 KOG1187 Serine/threonine prote 99.3 2.8E-14 6.2E-19 162.4 -7.8 236 664-941 99-351 (361)
216 KOG2110 Uncharacterized conser 99.3 4.4E-10 9.6E-15 119.8 23.5 243 9-299 3-251 (391)
217 KOG1310 WD40 repeat protein [G 99.3 2.4E-11 5.2E-16 134.2 14.1 181 205-402 44-232 (758)
218 PRK01742 tolB translocation pr 99.3 1.4E-10 3.1E-15 136.8 21.5 168 125-325 252-426 (429)
219 PRK01742 tolB translocation pr 99.3 2.2E-10 4.8E-15 135.2 22.2 234 94-380 183-426 (429)
220 KOG0974 WD-repeat protein WDR6 99.3 1.6E-10 3.4E-15 137.6 19.9 192 179-403 97-290 (967)
221 cd05064 PTKc_EphR_A10 Catalyti 99.3 6.1E-14 1.3E-18 154.9 -9.2 225 664-942 33-265 (266)
222 KOG2321 WD40 repeat protein [G 99.2 8.1E-10 1.8E-14 123.3 23.0 271 9-336 49-336 (703)
223 KOG4227 WD40 repeat protein [G 99.2 3E-10 6.4E-15 120.7 18.4 253 115-401 52-322 (609)
224 KOG1517 Guanine nucleotide bin 99.2 3.7E-10 8E-15 133.6 20.7 247 123-401 1067-1333(1387)
225 KOG0196 Tyrosine kinase, EPH ( 99.2 1.1E-12 2.4E-17 151.7 -0.3 226 663-942 656-891 (996)
226 cd05096 PTKc_DDR1 Catalytic do 99.2 9.1E-14 2E-18 156.7 -9.3 232 665-941 47-304 (304)
227 cd05102 PTKc_VEGFR3 Catalytic 99.2 1.5E-13 3.4E-18 157.4 -8.1 232 663-942 36-334 (338)
228 KOG2394 WD40 protein DMR-N9 [G 99.2 2.3E-10 4.9E-15 126.8 16.8 229 123-379 126-384 (636)
229 KOG2110 Uncharacterized conser 99.2 6.5E-09 1.4E-13 111.1 26.4 236 122-404 7-251 (391)
230 KOG4278 Protein tyrosine kinas 99.2 3.4E-13 7.3E-18 151.1 -6.1 222 667-942 295-523 (1157)
231 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.9E-14 115.0 20.8 250 4-298 17-272 (404)
232 cd06635 STKc_TAO1 Catalytic do 99.2 2E-13 4.3E-18 154.9 -8.5 244 664-963 50-315 (317)
233 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 99.2 1.5E-13 3.3E-18 153.2 -9.6 244 663-942 32-283 (284)
234 KOG0575 Polo-like serine/threo 99.2 6E-13 1.3E-17 151.4 -4.9 220 663-939 42-272 (592)
235 KOG1272 WD40-repeat-containing 99.2 5.2E-11 1.1E-15 129.7 10.1 283 162-503 127-413 (545)
236 cd05115 PTKc_Zap-70 Catalytic 99.2 2.4E-13 5.2E-18 149.3 -8.3 224 666-942 24-255 (257)
237 KOG0771 Prolactin regulatory e 99.2 2.8E-10 6E-15 123.5 14.6 197 124-341 148-354 (398)
238 cd05108 PTKc_EGFR Catalytic do 99.2 2.9E-13 6.3E-18 153.5 -8.9 223 667-942 39-268 (316)
239 KOG2139 WD40 repeat protein [G 99.2 5.8E-09 1.3E-13 110.7 23.6 254 120-406 98-388 (445)
240 KOG1524 WD40 repeat-containing 99.2 1.1E-10 2.4E-15 128.7 11.1 184 6-293 99-283 (737)
241 cd05111 PTK_HER3 Pseudokinase 99.2 4.4E-13 9.6E-18 149.1 -8.2 204 685-942 58-268 (279)
242 PF02239 Cytochrom_D1: Cytochr 99.2 4.6E-08 9.9E-13 112.1 32.2 292 5-342 30-348 (369)
243 KOG2111 Uncharacterized conser 99.2 2.3E-08 5.1E-13 104.9 26.7 244 12-297 6-257 (346)
244 cd05080 PTKc_Tyk2_rpt2 Catalyt 99.1 6.9E-13 1.5E-17 147.9 -7.4 238 664-942 33-281 (283)
245 cd05076 PTK_Tyk2_rpt1 Pseudoki 99.1 6.6E-13 1.4E-17 147.3 -7.8 217 663-939 43-273 (274)
246 cd05106 PTKc_CSF-1R Catalytic 99.1 5.1E-13 1.1E-17 155.1 -9.1 234 665-942 69-372 (374)
247 KOG2394 WD40 protein DMR-N9 [G 99.1 1.7E-09 3.6E-14 120.0 18.8 212 90-324 138-384 (636)
248 KOG0198 MEKK and related serin 99.1 1E-12 2.2E-17 144.1 -6.4 224 664-936 42-274 (313)
249 cd05104 PTKc_Kit Catalytic dom 99.1 7.2E-13 1.6E-17 153.9 -8.1 152 748-942 221-374 (375)
250 cd05116 PTKc_Syk Catalytic dom 99.1 5.7E-13 1.2E-17 146.3 -8.7 225 664-942 22-255 (257)
251 cd05097 PTKc_DDR_like Catalyti 99.1 4.5E-13 9.9E-18 150.3 -9.7 229 667-940 47-294 (295)
252 KOG1334 WD40 repeat protein [G 99.1 8.6E-10 1.9E-14 121.1 15.9 271 115-402 138-425 (559)
253 PF02239 Cytochrom_D1: Cytochr 99.1 1.4E-08 3E-13 116.3 26.5 324 25-410 8-356 (369)
254 KOG3881 Uncharacterized conser 99.1 3.7E-09 8E-14 113.6 19.6 254 10-304 54-328 (412)
255 cd05048 PTKc_Ror Catalytic Dom 99.1 8E-13 1.7E-17 147.3 -8.7 223 666-941 37-282 (283)
256 KOG1026 Nerve growth factor re 99.1 7.2E-13 1.6E-17 156.6 -10.0 232 663-943 515-763 (774)
257 KOG1095 Protein tyrosine kinas 99.1 1.4E-12 3E-17 159.8 -8.0 220 667-941 725-960 (1025)
258 KOG3881 Uncharacterized conser 99.1 3.6E-09 7.8E-14 113.7 18.6 227 7-273 101-341 (412)
259 cd08228 STKc_Nek6 Catalytic do 99.1 1.3E-12 2.9E-17 144.1 -8.0 228 664-943 27-266 (267)
260 cd05114 PTKc_Tec_Rlk Catalytic 99.1 1.5E-12 3.2E-17 142.8 -7.9 218 667-939 31-255 (256)
261 cd05105 PTKc_PDGFR_alpha Catal 99.1 1.6E-12 3.5E-17 151.7 -8.1 151 749-942 245-397 (400)
262 KOG1240 Protein kinase contain 99.1 8.9E-09 1.9E-13 124.2 22.2 270 38-342 1034-1335(1431)
263 cd05060 PTKc_Syk_like Catalyti 99.1 2.5E-12 5.5E-17 141.1 -7.4 224 666-942 25-255 (257)
264 PRK03629 tolB translocation pr 99.1 2.2E-08 4.7E-13 118.1 25.4 172 123-325 245-428 (429)
265 PF08662 eIF2A: Eukaryotic tra 99.1 1.2E-08 2.6E-13 106.3 20.2 156 124-304 9-186 (194)
266 cd05148 PTKc_Srm_Brk Catalytic 99.1 1.8E-12 3.8E-17 142.6 -9.1 223 664-941 30-260 (261)
267 cd05087 PTKc_Aatyk1_Aatyk3 Cat 99.1 2.1E-12 4.6E-17 142.8 -8.8 216 683-940 42-268 (269)
268 cd05056 PTKc_FAK Catalytic dom 99.1 2.5E-12 5.5E-17 142.2 -8.2 223 666-942 36-265 (270)
269 cd05107 PTKc_PDGFR_beta Cataly 99.1 2.7E-12 5.9E-17 149.7 -8.4 151 749-942 247-399 (401)
270 cd06649 PKc_MEK2 Catalytic dom 99.0 2E-12 4.3E-17 147.7 -9.7 166 664-862 30-203 (331)
271 KOG2111 Uncharacterized conser 99.0 6E-08 1.3E-12 101.9 24.3 180 34-248 76-259 (346)
272 cd05052 PTKc_Abl Catalytic dom 99.0 3.6E-12 7.7E-17 140.4 -7.5 222 666-942 33-262 (263)
273 cd05092 PTKc_TrkA Catalytic do 99.0 2.8E-12 6.2E-17 142.7 -8.7 223 666-941 37-280 (280)
274 cd05058 PTKc_Met_Ron Catalytic 99.0 2.9E-12 6.3E-17 140.9 -8.7 225 666-942 25-259 (262)
275 cd05033 PTKc_EphR Catalytic do 99.0 3.5E-12 7.7E-17 140.7 -8.1 223 667-942 35-265 (266)
276 cd05063 PTKc_EphR_A2 Catalytic 99.0 3.8E-12 8.2E-17 140.6 -8.0 223 667-942 36-267 (268)
277 cd05110 PTKc_HER4 Catalytic do 99.0 2.2E-12 4.8E-17 145.4 -10.1 223 667-942 39-268 (303)
278 cd05038 PTKc_Jak_rpt2 Catalyti 99.0 8.7E-12 1.9E-16 138.8 -5.5 241 664-942 33-283 (284)
279 PRK03629 tolB translocation pr 99.0 3.9E-08 8.4E-13 116.0 24.7 205 94-335 178-395 (429)
280 KOG2321 WD40 repeat protein [G 99.0 4.7E-08 1E-12 109.5 23.4 195 166-395 135-338 (703)
281 cd05631 STKc_GRK4 Catalytic do 99.0 4E-12 8.7E-17 141.9 -8.8 231 663-948 24-273 (285)
282 KOG1064 RAVE (regulator of V-A 99.0 1.9E-09 4.2E-14 133.5 13.6 195 9-304 2206-2406(2439)
283 cd05082 PTKc_Csk Catalytic dom 99.0 4.7E-12 1E-16 138.9 -8.2 220 663-942 28-256 (256)
284 cd05042 PTKc_Aatyk Catalytic d 99.0 2.5E-12 5.4E-17 142.2 -10.4 215 683-939 42-267 (269)
285 cd05068 PTKc_Frk_like Catalyti 99.0 6.4E-12 1.4E-16 138.2 -7.2 222 665-941 31-260 (261)
286 cd05094 PTKc_TrkC Catalytic do 99.0 4E-12 8.7E-17 142.4 -8.9 223 667-942 38-282 (291)
287 cd06646 STKc_MAP4K5 Catalytic 99.0 6.6E-12 1.4E-16 138.6 -7.2 226 663-937 33-264 (267)
288 cd05085 PTKc_Fer Catalytic dom 99.0 4.3E-12 9.4E-17 138.5 -8.8 222 665-940 20-249 (250)
289 cd08224 STKc_Nek6_Nek7 Catalyt 99.0 7E-12 1.5E-16 138.2 -7.2 228 663-942 26-265 (267)
290 cd05084 PTKc_Fes Catalytic dom 99.0 1.8E-12 3.9E-17 141.8 -12.0 224 664-940 20-251 (252)
291 KOG0578 p21-activated serine/t 99.0 4.7E-12 1E-16 143.1 -8.8 235 663-956 297-537 (550)
292 cd05039 PTKc_Csk_like Catalyti 99.0 6.2E-12 1.3E-16 137.9 -7.9 220 663-941 28-255 (256)
293 cd05053 PTKc_FGFR Catalytic do 99.0 7.6E-12 1.7E-16 140.2 -7.4 224 666-942 44-291 (293)
294 cd05059 PTKc_Tec_like Catalyti 99.0 9.5E-12 2.1E-16 136.5 -6.5 218 667-939 31-255 (256)
295 PRK04922 tolB translocation pr 99.0 4.7E-08 1E-12 115.8 24.3 170 124-324 251-432 (433)
296 cd05086 PTKc_Aatyk2 Catalytic 99.0 5.5E-12 1.2E-16 139.4 -8.6 215 683-939 42-266 (268)
297 cd05101 PTKc_FGFR2 Catalytic d 99.0 5.7E-12 1.2E-16 142.1 -8.8 235 663-942 46-296 (304)
298 cd06643 STKc_SLK Catalytic dom 99.0 2.9E-12 6.3E-17 142.8 -11.0 224 665-936 31-260 (282)
299 cd05585 STKc_YPK1_like Catalyt 99.0 3.6E-12 7.8E-17 144.3 -10.6 221 664-941 18-247 (312)
300 cd05072 PTKc_Lyn Catalytic dom 99.0 8.1E-12 1.8E-16 137.4 -7.5 222 666-942 32-261 (261)
301 PLN00113 leucine-rich repeat r 99.0 2E-11 4.2E-16 160.0 -5.4 228 663-942 714-951 (968)
302 cd05093 PTKc_TrkB Catalytic do 99.0 2.9E-12 6.3E-17 143.2 -11.7 223 667-942 38-279 (288)
303 KOG0200 Fibroblast/platelet-de 99.0 2.5E-11 5.4E-16 148.5 -4.5 225 667-942 331-579 (609)
304 cd05045 PTKc_RET Catalytic dom 99.0 9.8E-12 2.1E-16 139.1 -7.8 224 666-942 32-286 (290)
305 cd05055 PTKc_PDGFR Catalytic d 99.0 3.1E-12 6.6E-17 144.2 -11.9 225 666-942 67-301 (302)
306 cd05054 PTKc_VEGFR Catalytic d 99.0 7.3E-12 1.6E-16 143.3 -9.0 152 748-942 180-333 (337)
307 cd05077 PTK_Jak1_rpt1 Pseudoki 99.0 3.1E-12 6.7E-17 141.0 -11.7 213 666-938 34-260 (262)
308 cd05600 STKc_Sid2p_Dbf2p Catal 99.0 7.2E-12 1.6E-16 143.3 -9.3 220 664-937 26-256 (333)
309 PTZ00267 NIMA-related protein 99.0 5.8E-12 1.3E-16 151.0 -10.8 218 666-936 95-321 (478)
310 cd06644 STKc_STK10_LOK Catalyt 99.0 5.8E-12 1.2E-16 141.2 -10.2 223 664-937 37-268 (292)
311 PLN00034 mitogen-activated pro 99.0 2.2E-11 4.8E-16 140.4 -5.8 222 664-937 99-327 (353)
312 cd06650 PKc_MEK1 Catalytic dom 99.0 5.8E-12 1.3E-16 144.0 -10.5 166 664-862 30-203 (333)
313 cd08229 STKc_Nek7 Catalytic do 99.0 5.3E-12 1.2E-16 139.3 -10.5 228 663-942 26-265 (267)
314 cd06655 STKc_PAK2 Catalytic do 99.0 5.9E-12 1.3E-16 141.4 -10.3 219 663-936 43-267 (296)
315 cd06651 STKc_MEKK3 Catalytic d 99.0 4.6E-12 9.9E-17 139.9 -11.2 171 663-862 26-210 (266)
316 cd05051 PTKc_DDR Catalytic dom 99.0 1.3E-11 2.8E-16 138.5 -7.7 233 664-940 46-295 (296)
317 cd06658 STKc_PAK5 Catalytic do 99.0 1.5E-12 3.2E-17 146.0 -15.3 220 663-937 46-271 (292)
318 cd06640 STKc_MST4 Catalytic do 98.9 8.2E-12 1.8E-16 138.8 -9.4 217 664-937 29-252 (277)
319 cd05090 PTKc_Ror1 Catalytic do 98.9 7.7E-12 1.7E-16 139.4 -9.7 226 663-941 33-282 (283)
320 cd06637 STKc_TNIK Catalytic do 98.9 7.5E-12 1.6E-16 138.5 -9.8 224 664-937 31-268 (272)
321 PRK05137 tolB translocation pr 98.9 1.6E-07 3.5E-12 111.3 26.5 154 123-300 248-416 (435)
322 cd05062 PTKc_IGF-1R Catalytic 98.9 1E-11 2.2E-16 138.0 -9.0 224 664-940 36-276 (277)
323 cd06612 STKc_MST1_2 Catalytic 98.9 5.9E-12 1.3E-16 137.9 -10.7 218 664-936 28-251 (256)
324 cd05091 PTKc_Ror2 Catalytic do 98.9 6.1E-12 1.3E-16 140.2 -10.8 226 663-941 34-282 (283)
325 cd06642 STKc_STK25-YSK1 Cataly 98.9 5.3E-12 1.1E-16 140.3 -11.3 217 664-937 29-252 (277)
326 cd05057 PTKc_EGFR_like Catalyt 98.9 1.2E-11 2.5E-16 137.6 -8.6 223 667-942 39-268 (279)
327 PRK04922 tolB translocation pr 98.9 9.4E-08 2E-12 113.2 24.1 210 95-341 184-409 (433)
328 PRK02889 tolB translocation pr 98.9 9E-08 2E-12 113.0 23.8 172 123-325 242-425 (427)
329 cd05065 PTKc_EphR_B Catalytic 98.9 1.1E-11 2.4E-16 137.0 -9.0 223 667-942 35-268 (269)
330 cd05067 PTKc_Lck_Blk Catalytic 98.9 2.1E-11 4.6E-16 134.0 -6.8 223 664-941 30-259 (260)
331 cd06611 STKc_SLK_like Catalyti 98.9 6.2E-12 1.3E-16 139.9 -11.2 225 664-936 30-260 (280)
332 cd06656 STKc_PAK3 Catalytic do 98.9 1.7E-11 3.6E-16 137.9 -8.0 220 663-937 43-268 (297)
333 cd05035 PTKc_Axl_like Catalyti 98.9 2.2E-11 4.7E-16 134.8 -7.0 225 665-942 28-272 (273)
334 cd05049 PTKc_Trk Catalytic dom 98.9 1.5E-11 3.3E-16 136.7 -8.3 225 664-941 35-280 (280)
335 cd05113 PTKc_Btk_Bmx Catalytic 98.9 1.4E-11 3E-16 135.2 -8.6 218 667-939 31-255 (256)
336 cd06626 STKc_MEKK4 Catalytic d 98.9 2.4E-11 5.2E-16 133.7 -6.8 226 663-936 24-259 (264)
337 cd05075 PTKc_Axl Catalytic dom 98.9 1.4E-11 3E-16 136.4 -8.7 221 667-941 29-270 (272)
338 cd05103 PTKc_VEGFR2 Catalytic 98.9 1.2E-11 2.5E-16 142.1 -9.7 237 662-942 35-339 (343)
339 cd05079 PTKc_Jak1_rpt2 Catalyt 98.9 2E-11 4.4E-16 136.1 -7.6 241 663-942 32-283 (284)
340 cd05070 PTKc_Fyn_Yrk Catalytic 98.9 2.5E-11 5.4E-16 133.4 -6.9 220 667-941 33-259 (260)
341 KOG2052 Activin A type IB rece 98.9 2.4E-11 5.3E-16 133.0 -6.8 252 659-942 229-503 (513)
342 cd05040 PTKc_Ack_like Catalyti 98.9 9E-12 1.9E-16 136.6 -10.6 223 666-940 25-256 (257)
343 cd05098 PTKc_FGFR1 Catalytic d 98.9 1.9E-11 4.1E-16 138.1 -8.3 224 666-942 52-299 (307)
344 cd06654 STKc_PAK1 Catalytic do 98.9 1.2E-11 2.6E-16 138.9 -9.8 219 664-937 45-269 (296)
345 cd06607 STKc_TAO Catalytic dom 98.9 8.4E-12 1.8E-16 141.0 -11.2 218 664-937 40-266 (307)
346 KOG0280 Uncharacterized conser 98.9 1.1E-07 2.4E-12 98.9 19.5 154 167-342 124-285 (339)
347 cd06645 STKc_MAP4K3 Catalytic 98.9 2.2E-11 4.9E-16 134.3 -8.2 224 664-936 34-263 (267)
348 cd07847 STKc_CDKL1_4 Catalytic 98.9 2.7E-11 5.9E-16 135.0 -7.7 170 663-862 25-202 (286)
349 cd06610 STKc_OSR1_SPAK Catalyt 98.9 1.8E-11 3.9E-16 134.9 -9.1 227 664-937 26-263 (267)
350 cd06634 STKc_TAO2 Catalytic do 98.9 2E-11 4.2E-16 138.0 -9.1 219 664-938 40-267 (308)
351 cd05571 STKc_PKB Catalytic dom 98.9 2.4E-11 5.1E-16 138.3 -8.5 169 663-862 19-196 (323)
352 cd06917 STKc_NAK1_like Catalyt 98.9 2.6E-11 5.7E-16 134.6 -8.1 219 663-937 25-254 (277)
353 cd05099 PTKc_FGFR4 Catalytic d 98.9 2.7E-11 5.8E-16 137.3 -8.2 233 665-942 45-293 (314)
354 cd05584 STKc_p70S6K Catalytic 98.9 3.1E-11 6.6E-16 137.4 -7.8 170 662-862 22-201 (323)
355 cd05066 PTKc_EphR_A Catalytic 98.9 2.4E-11 5.1E-16 134.3 -8.5 225 666-942 34-266 (267)
356 KOG0581 Mitogen-activated prot 98.9 1.5E-11 3.2E-16 132.8 -9.8 218 664-936 104-333 (364)
357 cd00192 PTKc Catalytic domain 98.9 1.9E-11 4.2E-16 134.0 -9.2 224 664-940 23-262 (262)
358 cd06609 STKc_MST3_like Catalyt 98.9 2.3E-11 5E-16 134.8 -8.7 217 664-936 26-249 (274)
359 KOG0974 WD-repeat protein WDR6 98.9 4.4E-08 9.5E-13 117.3 18.0 195 122-342 89-289 (967)
360 cd08221 STKc_Nek9 Catalytic do 98.9 2.7E-11 5.9E-16 132.7 -8.4 220 663-937 24-252 (256)
361 cd05593 STKc_PKB_gamma Catalyt 98.9 3E-11 6.4E-16 137.8 -8.5 169 663-862 19-196 (328)
362 cd05043 PTK_Ryk Pseudokinase d 98.9 2.3E-11 5E-16 135.3 -9.4 226 664-942 35-276 (280)
363 cd05100 PTKc_FGFR3 Catalytic d 98.9 3.8E-11 8.3E-16 137.3 -7.9 224 666-942 46-293 (334)
364 cd05595 STKc_PKB_beta Catalyti 98.9 2.6E-11 5.6E-16 138.0 -9.3 169 663-862 19-196 (323)
365 cd06629 STKc_MAPKKK_Bck1_like 98.9 2.7E-11 5.8E-16 134.1 -9.2 226 664-936 26-267 (272)
366 cd05083 PTKc_Chk Catalytic dom 98.9 3.7E-11 8E-16 131.6 -8.3 220 662-941 27-253 (254)
367 cd05626 STKc_LATS2 Catalytic d 98.9 2.1E-11 4.5E-16 142.2 -11.0 114 664-787 26-148 (381)
368 PTZ00263 protein kinase A cata 98.9 2.3E-11 5E-16 138.8 -10.4 165 664-862 43-216 (329)
369 cd06659 STKc_PAK6 Catalytic do 98.9 1E-11 2.3E-16 139.5 -13.1 227 663-944 45-279 (297)
370 cd06631 STKc_YSK4 Catalytic do 98.9 3.1E-11 6.6E-16 133.1 -9.1 225 664-936 24-260 (265)
371 cd05582 STKc_RSK_N N-terminal 98.9 4.3E-11 9.2E-16 135.9 -8.3 221 663-940 23-253 (318)
372 cd05073 PTKc_Hck Catalytic dom 98.9 5.6E-11 1.2E-15 130.7 -7.1 220 667-941 33-259 (260)
373 cd05601 STKc_CRIK Catalytic do 98.8 3.4E-11 7.4E-16 137.5 -9.2 238 663-946 25-273 (330)
374 KOG4547 WD40 repeat-containing 98.8 1.3E-07 2.8E-12 107.3 19.3 193 179-401 3-220 (541)
375 cd05044 PTKc_c-ros Catalytic d 98.8 6.1E-11 1.3E-15 131.0 -7.2 221 667-940 29-268 (269)
376 cd05594 STKc_PKB_alpha Catalyt 98.8 5.3E-11 1.1E-15 135.6 -8.0 169 663-862 19-197 (325)
377 KOG0595 Serine/threonine-prote 98.8 1.3E-11 2.8E-16 134.2 -12.1 167 663-862 34-215 (429)
378 cd05032 PTKc_InsR_like Catalyt 98.8 4.5E-11 9.6E-16 132.7 -8.4 223 665-940 37-276 (277)
379 cd05041 PTKc_Fes_like Catalyti 98.8 6.2E-11 1.4E-15 129.4 -7.2 224 664-940 19-250 (251)
380 cd05109 PTKc_HER2 Catalytic do 98.8 4.3E-11 9.3E-16 133.1 -8.8 223 667-942 39-268 (279)
381 cd06624 STKc_ASK Catalytic dom 98.8 4.4E-11 9.6E-16 132.1 -8.6 221 665-936 34-263 (268)
382 cd06657 STKc_PAK4 Catalytic do 98.8 4.5E-11 9.6E-16 134.0 -8.8 228 664-946 45-280 (292)
383 cd07839 STKc_CDK5 Catalytic do 98.8 4.6E-11 9.9E-16 133.2 -8.7 168 664-861 25-200 (284)
384 KOG4547 WD40 repeat-containing 98.8 1.3E-07 2.9E-12 107.2 18.9 216 20-297 2-221 (541)
385 PRK02889 tolB translocation pr 98.8 3.2E-07 6.9E-12 108.4 23.1 179 120-329 195-385 (427)
386 cd05078 PTK_Jak2_Jak3_rpt1 Pse 98.8 2.2E-11 4.9E-16 133.7 -11.4 216 665-939 28-257 (258)
387 cd05609 STKc_MAST Catalytic do 98.8 4.1E-11 8.8E-16 135.2 -9.7 231 664-941 26-273 (305)
388 cd06625 STKc_MEKK3_like Cataly 98.8 3.7E-11 8E-16 132.2 -9.9 221 664-937 27-259 (263)
389 cd05047 PTKc_Tie Catalytic dom 98.8 1.3E-10 2.7E-15 128.7 -5.7 202 685-942 44-268 (270)
390 cd05607 STKc_GRK7 Catalytic do 98.8 4.1E-11 8.8E-16 133.2 -9.7 218 663-934 17-246 (277)
391 cd05088 PTKc_Tie2 Catalytic do 98.8 1.5E-10 3.2E-15 130.5 -5.4 202 685-942 56-280 (303)
392 cd05069 PTKc_Yes Catalytic dom 98.8 8.5E-11 1.8E-15 129.3 -7.3 204 684-941 49-259 (260)
393 cd08220 STKc_Nek8 Catalytic do 98.8 7.3E-11 1.6E-15 129.2 -7.8 218 664-937 25-252 (256)
394 cd08216 PK_STRAD Pseudokinase 98.8 2.9E-11 6.3E-16 137.0 -11.3 180 663-863 24-212 (314)
395 cd05089 PTKc_Tie1 Catalytic do 98.8 1.1E-10 2.4E-15 131.1 -6.6 201 686-942 52-275 (297)
396 KOG0195 Integrin-linked kinase 98.8 1.9E-10 4.1E-15 117.8 -4.2 222 662-942 211-446 (448)
397 cd08219 STKc_Nek3 Catalytic do 98.8 1E-10 2.2E-15 128.2 -6.8 218 664-936 25-250 (255)
398 cd06647 STKc_PAK_I Catalytic d 98.8 6.4E-11 1.4E-15 132.8 -8.7 218 664-936 44-267 (293)
399 COG2706 3-carboxymuconate cycl 98.8 5.7E-06 1.2E-10 89.3 29.4 275 94-399 15-319 (346)
400 cd05037 PTK_Jak_rpt1 Pseudokin 98.8 3.2E-11 7E-16 132.3 -11.0 198 683-939 48-258 (259)
401 cd05608 STKc_GRK1 Catalytic do 98.8 4.5E-11 9.7E-16 133.1 -10.1 218 663-932 17-246 (280)
402 PRK05137 tolB translocation pr 98.8 1.4E-06 3.1E-11 103.3 27.5 212 144-401 184-412 (435)
403 cd05034 PTKc_Src_like Catalyti 98.8 1E-10 2.2E-15 128.5 -7.4 220 667-941 33-260 (261)
404 cd07859 STKc_TDY_MAPK_plant Ca 98.8 8.9E-11 1.9E-15 134.5 -8.2 173 663-862 24-209 (338)
405 cd06613 STKc_MAP4K3_like Catal 98.8 3E-11 6.4E-16 132.8 -11.8 224 665-936 29-258 (262)
406 cd06608 STKc_myosinIII_like Ca 98.8 5.3E-11 1.1E-15 131.7 -9.9 224 664-936 31-270 (275)
407 cd06605 PKc_MAPKK Catalytic do 98.8 1.5E-11 3.3E-16 135.4 -14.2 223 663-936 25-255 (265)
408 cd05112 PTKc_Itk Catalytic dom 98.8 9.9E-11 2.2E-15 128.2 -7.7 218 667-939 31-255 (256)
409 KOG1094 Discoidin domain recep 98.8 3.5E-11 7.6E-16 135.1 -11.3 231 665-943 563-805 (807)
410 cd08529 STKc_FA2-like Catalyti 98.8 7.1E-11 1.5E-15 129.3 -9.0 219 664-937 25-252 (256)
411 cd06628 STKc_MAPKKK_Byr2_like 98.8 1.2E-10 2.5E-15 128.6 -7.4 224 664-937 25-263 (267)
412 cd06614 STKc_PAK Catalytic dom 98.8 3.6E-11 7.8E-16 134.2 -11.6 217 664-936 44-268 (286)
413 PF08662 eIF2A: Eukaryotic tra 98.8 3.2E-07 6.9E-12 95.6 18.8 145 169-341 10-179 (194)
414 cd08223 STKc_Nek4 Catalytic do 98.8 8.5E-11 1.8E-15 128.8 -8.5 218 664-936 25-252 (257)
415 cd05605 STKc_GRK4_like Catalyt 98.8 6.2E-11 1.3E-15 132.4 -9.9 168 664-862 25-202 (285)
416 cd05614 STKc_MSK2_N N-terminal 98.8 1.3E-10 2.8E-15 132.8 -7.6 171 663-862 27-208 (332)
417 cd05071 PTKc_Src Catalytic dom 98.8 5.2E-11 1.1E-15 131.1 -10.5 220 667-941 33-259 (262)
418 cd06636 STKc_MAP4K4_6 Catalyti 98.8 7.2E-11 1.6E-15 131.5 -9.6 223 664-936 41-277 (282)
419 cd06648 STKc_PAK_II Catalytic 98.8 3.7E-11 8.1E-16 134.1 -11.9 216 664-936 44-267 (285)
420 cd05573 STKc_ROCK_NDR_like Cat 98.8 4.1E-11 8.8E-16 138.1 -12.1 231 663-937 25-284 (350)
421 cd05579 STKc_MAST_like Catalyt 98.8 3.4E-11 7.4E-16 132.3 -12.2 224 664-940 18-256 (265)
422 cd05095 PTKc_DDR2 Catalytic do 98.8 5.1E-11 1.1E-15 133.8 -11.1 228 666-940 48-295 (296)
423 cd07833 STKc_CDKL Catalytic do 98.8 6.6E-11 1.4E-15 132.1 -10.3 170 664-862 26-203 (288)
424 KOG0280 Uncharacterized conser 98.8 3.2E-07 7E-12 95.4 17.5 184 123-322 124-309 (339)
425 cd05591 STKc_nPKC_epsilon Cata 98.8 9.4E-11 2E-15 133.3 -9.3 168 664-862 20-197 (321)
426 PF10282 Lactonase: Lactonase, 98.8 2.3E-05 4.9E-10 89.9 34.9 252 123-400 39-321 (345)
427 cd08215 STKc_Nek Catalytic dom 98.8 1E-10 2.3E-15 127.8 -8.8 218 664-936 25-253 (258)
428 cd05575 STKc_SGK Catalytic dom 98.8 6.5E-11 1.4E-15 134.7 -10.8 169 663-862 19-197 (323)
429 cd06641 STKc_MST3 Catalytic do 98.8 9.8E-11 2.1E-15 130.1 -9.2 217 664-937 29-252 (277)
430 cd05036 PTKc_ALK_LTK Catalytic 98.8 8.2E-11 1.8E-15 130.7 -9.8 222 666-940 38-276 (277)
431 cd08218 STKc_Nek1 Catalytic do 98.8 1.6E-10 3.5E-15 126.6 -7.7 218 664-936 25-251 (256)
432 KOG4257 Focal adhesion tyrosin 98.7 3.6E-10 7.7E-15 127.8 -5.0 232 667-952 421-659 (974)
433 cd05050 PTKc_Musk Catalytic do 98.7 1.2E-10 2.5E-15 130.2 -9.0 224 665-941 36-288 (288)
434 cd05612 STKc_PRKX_like Catalyt 98.7 3.6E-11 7.9E-16 134.7 -13.2 165 664-862 26-199 (291)
435 cd05606 STKc_beta_ARK Catalyti 98.7 1.3E-10 2.8E-15 129.3 -8.8 168 663-862 18-197 (278)
436 cd07864 STKc_CDK12 Catalytic d 98.7 1.7E-10 3.8E-15 129.7 -7.9 170 664-862 32-219 (302)
437 cd06632 STKc_MEKK1_plant Catal 98.7 6.1E-11 1.3E-15 129.9 -11.4 219 663-936 24-253 (258)
438 cd06633 STKc_TAO3 Catalytic do 98.7 6.7E-11 1.5E-15 134.0 -11.4 220 662-937 44-272 (313)
439 cd05611 STKc_Rim15_like Cataly 98.7 6.5E-11 1.4E-15 130.1 -11.2 219 664-939 21-249 (260)
440 cd06652 STKc_MEKK2 Catalytic d 98.7 1.1E-10 2.3E-15 128.9 -9.6 170 664-862 27-210 (265)
441 KOG1354 Serine/threonine prote 98.7 3.2E-07 6.9E-12 97.2 16.8 191 202-400 154-358 (433)
442 KOG2315 Predicted translation 98.7 8.3E-06 1.8E-10 92.2 29.0 320 12-401 35-390 (566)
443 cd06619 PKc_MKK5 Catalytic dom 98.7 1.9E-10 4.2E-15 127.9 -7.7 220 663-936 25-251 (279)
444 cd07848 STKc_CDKL5 Catalytic d 98.7 6E-11 1.3E-15 132.5 -11.9 169 664-862 26-202 (287)
445 cd05570 STKc_PKC Catalytic dom 98.7 7.9E-11 1.7E-15 133.7 -11.2 212 664-932 20-241 (318)
446 cd05589 STKc_PKN Catalytic dom 98.7 1.6E-10 3.4E-15 131.7 -8.8 167 664-862 24-202 (324)
447 cd06615 PKc_MEK Catalytic doma 98.7 9.9E-11 2.1E-15 132.3 -10.4 165 665-862 27-199 (308)
448 smart00219 TyrKc Tyrosine kina 98.7 1.2E-10 2.6E-15 127.5 -9.5 222 664-939 28-258 (258)
449 cd06623 PKc_MAPKK_plant_like C 98.7 8.1E-11 1.8E-15 129.4 -11.2 220 664-937 26-255 (264)
450 cd05572 STKc_cGK_PKG Catalytic 98.7 2E-10 4.4E-15 126.3 -8.3 220 664-937 18-251 (262)
451 cd07840 STKc_CDK9_like Catalyt 98.7 1E-10 2.2E-15 130.3 -10.7 170 664-862 24-203 (287)
452 cd07846 STKc_CDKL2_3 Catalytic 98.7 1.4E-10 3.1E-15 129.3 -9.7 169 664-862 26-202 (286)
453 cd08528 STKc_Nek10 Catalytic d 98.7 4.3E-10 9.4E-15 124.2 -5.7 193 693-940 66-268 (269)
454 KOG4190 Uncharacterized conser 98.7 4.7E-08 1E-12 108.2 10.2 247 2-294 726-986 (1034)
455 cd06638 STKc_myosinIIIA Cataly 98.7 2.3E-10 5.1E-15 127.6 -8.0 225 664-937 43-282 (286)
456 cd05598 STKc_LATS Catalytic do 98.7 2.2E-10 4.7E-15 133.5 -8.7 115 663-787 25-148 (376)
457 TIGR02800 propeller_TolB tol-p 98.7 1.8E-06 3.9E-11 102.0 24.6 151 122-296 235-397 (417)
458 COG4946 Uncharacterized protei 98.7 5.4E-05 1.2E-09 83.6 33.2 207 93-329 285-503 (668)
459 cd08227 PK_STRAD_alpha Pseudok 98.7 2.1E-10 4.7E-15 130.7 -8.7 179 663-862 24-211 (327)
460 cd05632 STKc_GRK5 Catalytic do 98.7 3.3E-10 7.1E-15 126.5 -7.2 169 663-862 24-202 (285)
461 cd05590 STKc_nPKC_eta Catalyti 98.7 1.1E-10 2.4E-15 132.7 -11.2 169 663-862 19-197 (320)
462 cd05618 STKc_aPKC_iota Catalyt 98.7 8.7E-11 1.9E-15 134.0 -12.1 168 664-862 20-197 (329)
463 cd06620 PKc_MAPKK_Byr1_like Ca 98.7 1.1E-10 2.4E-15 130.2 -11.1 227 664-937 30-265 (284)
464 KOG0199 ACK and related non-re 98.7 4E-10 8.6E-15 129.1 -6.5 216 667-936 141-366 (1039)
465 cd07861 STKc_CDK1_euk Catalyti 98.7 3.5E-10 7.5E-15 126.1 -7.4 169 664-862 25-203 (285)
466 cd05061 PTKc_InsR Catalytic do 98.7 2E-10 4.4E-15 128.4 -9.4 231 664-942 36-278 (288)
467 cd06621 PKc_MAPKK_Pek1_like Ca 98.7 1.4E-10 2.9E-15 129.7 -10.8 226 664-937 26-265 (287)
468 cd05122 PKc_STE Catalytic doma 98.7 1E-10 2.2E-15 127.3 -11.6 219 664-936 25-249 (253)
469 cd05586 STKc_Sck1_like Catalyt 98.7 1.7E-10 3.8E-15 131.7 -10.6 170 663-862 17-198 (330)
470 cd06606 STKc_MAPKKK Catalytic 98.7 3.2E-10 6.9E-15 124.0 -8.2 221 664-936 25-255 (260)
471 cd05592 STKc_nPKC_theta_delta 98.7 3.5E-10 7.5E-15 128.3 -8.2 183 693-932 53-241 (316)
472 cd05588 STKc_aPKC Catalytic do 98.7 2.6E-10 5.7E-15 130.1 -9.3 169 664-863 20-198 (329)
473 KOG0309 Conserved WD40 repeat- 98.7 1.9E-07 4E-12 107.2 13.5 252 124-402 71-340 (1081)
474 cd08225 STKc_Nek5 Catalytic do 98.7 2.6E-10 5.7E-15 124.8 -9.2 219 664-937 25-253 (257)
475 PF10282 Lactonase: Lactonase, 98.7 8E-05 1.7E-09 85.4 35.4 256 12-301 37-329 (345)
476 cd05578 STKc_Yank1 Catalytic d 98.7 9E-11 2E-15 128.8 -13.2 214 664-933 25-248 (258)
477 cd05599 STKc_NDR_like Catalyti 98.7 2.6E-10 5.5E-15 132.2 -10.2 117 663-789 25-150 (364)
478 PRK04792 tolB translocation pr 98.7 3.2E-06 7E-11 100.2 24.2 170 124-324 265-446 (448)
479 PRK13184 pknD serine/threonine 98.7 2.9E-10 6.3E-15 140.7 -10.4 235 664-941 27-289 (932)
480 cd05596 STKc_ROCK Catalytic do 98.7 3.8E-10 8.3E-15 130.9 -8.9 173 663-862 67-248 (370)
481 PHA03209 serine/threonine kina 98.7 1.8E-10 3.8E-15 133.1 -11.8 146 684-861 105-256 (357)
482 cd07843 STKc_CDC2L1 Catalytic 98.6 6.9E-10 1.5E-14 124.3 -6.7 169 664-862 30-208 (293)
483 PRK00178 tolB translocation pr 98.6 4.1E-06 8.9E-11 99.4 25.1 171 123-324 245-427 (430)
484 cd05630 STKc_GRK6 Catalytic do 98.6 2.6E-10 5.6E-15 127.3 -10.2 168 664-862 25-202 (285)
485 cd06653 STKc_MEKK3_like_1 Cata 98.6 4.9E-10 1.1E-14 123.5 -8.0 170 664-862 27-210 (264)
486 cd05046 PTK_CCK4 Pseudokinase 98.6 1.7E-10 3.6E-15 128.0 -11.7 225 663-940 34-274 (275)
487 cd05620 STKc_nPKC_delta Cataly 98.6 1.9E-10 4.1E-15 130.5 -11.7 217 663-936 19-246 (316)
488 cd05587 STKc_cPKC Catalytic do 98.6 3.2E-10 7E-15 129.1 -9.9 168 664-862 25-202 (324)
489 cd05118 STKc_CMGC Catalytic do 98.6 2.2E-10 4.7E-15 127.5 -11.1 169 664-862 24-200 (283)
490 PHA03390 pk1 serine/threonine- 98.6 4.8E-10 1E-14 123.9 -8.4 186 694-936 67-260 (267)
491 cd07844 STKc_PCTAIRE_like Cata 98.6 6.2E-10 1.4E-14 124.5 -7.6 169 664-862 30-205 (291)
492 cd05627 STKc_NDR2 Catalytic do 98.6 7.3E-10 1.6E-14 128.1 -7.3 178 663-862 25-237 (360)
493 cd05633 STKc_GRK3 Catalytic do 98.6 4.3E-10 9.4E-15 125.1 -8.9 167 664-862 19-197 (279)
494 cd06618 PKc_MKK7 Catalytic dom 98.6 1.1E-10 2.3E-15 131.2 -14.0 224 664-937 40-272 (296)
495 cd05604 STKc_SGK3 Catalytic do 98.6 5.7E-10 1.2E-14 127.1 -8.2 169 663-862 19-197 (325)
496 cd07876 STKc_JNK2 Catalytic do 98.6 9E-10 1.9E-14 127.4 -6.9 165 663-862 45-223 (359)
497 cd05619 STKc_nPKC_theta Cataly 98.6 5.2E-10 1.1E-14 126.9 -8.7 167 665-862 21-197 (316)
498 cd05603 STKc_SGK2 Catalytic do 98.6 4.8E-10 1E-14 127.5 -9.1 168 664-862 20-197 (321)
499 cd07869 STKc_PFTAIRE1 Catalyti 98.6 5.4E-10 1.2E-14 126.0 -8.7 170 663-862 29-205 (303)
500 cd07871 STKc_PCTAIRE3 Catalyti 98.6 4.8E-10 1E-14 125.4 -9.1 169 664-862 30-205 (288)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-97 Score=812.56 Aligned_cols=747 Identities=21% Similarity=0.283 Sum_probs=619.1
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.++|..|+++|++++|||..+|++++..+|.|.|||++|+..+++|+...
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~------------------------------ 55 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE------------------------------ 55 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc------------------------------
Confidence 46788899999999999999999999999999999999999999998432
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~ 162 (1081)
- +|++..|.+.. .++++|+||..++ |+++|++ .+..++.
T Consensus 56 -~------------------------------------PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e--kV~~FeA 95 (794)
T KOG0276|consen 56 -V------------------------------------PVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE--KVKTFEA 95 (794)
T ss_pred -c------------------------------------chhhheeeecc-ceEEEecCCceEEEEecccce--eeEEeec
Confidence 2 34555566654 4999999999886 9999974 6788999
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC-CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~-~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
|.++|+|++. +|..++++++|+|.+|++||++ .+.+.++|+ ||.++|++++ ++|.|.+.|+|+|.|++|++
T Consensus 96 H~DyIR~iav-----HPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~--fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 96 HSDYIRSIAV-----HPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVA--FNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred cccceeeeee-----cCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEE--ecCCCccceeeeeccccEEE
Confidence 9999999999 5789999999999999999997 568888887 9999999998 38999999999999999999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEe
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~ 321 (1081)
|.+.+.. +.+++++|+++|+|++|.+. +|.++|+||++|.+|+|||+++.+|++++ .+|..+|.++.
T Consensus 168 Wslgs~~------~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk~CV~TL------eGHt~Nvs~v~ 234 (794)
T KOG0276|consen 168 WSLGSPH------PNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTKSCVQTL------EGHTNNVSFVF 234 (794)
T ss_pred EEcCCCC------CceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchHHHHHHh------hcccccceEEE
Confidence 9998876 67789999999999999984 57799999999999999999999998875 89999999999
Q ss_pred ecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 322 RAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 322 ~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
|||..+++ +||+|| |||+.. +++.+. ++. .+.+||||++.++. .+.++.|.++|.| .+=
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~--Ty~lE~-------------tLn-~gleRvW~I~~~k~-~~~i~vG~Deg~i-~v~ 296 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSK--TYKLEK-------------TLN-YGLERVWCIAAHKG-DGKIAVGFDEGSV-TVK 296 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCc--ceehhh-------------hhh-cCCceEEEEeecCC-CCeEEEeccCCcE-EEE
Confidence 99999965 899998 689876 444332 343 34459999999997 6668999999997 333
Q ss_pred CCCCCCCCcccCCCCCCCCceEEEEecCcEEEEEEeecCCCCCCCCCCcccCCCCCcCCCchhHHhhhhcccccccccCC
Q 001416 399 DPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPH 478 (1081)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 478 (1081)
-.++.|.+. .+....++|...++++-.+...-.. .. --.+|.......+++ .-+..+|
T Consensus 297 lgreeP~vs------Md~~gKIiwa~~~ei~~~~~ks~~~-------~~-ev~DgErL~LsvKeL-------gs~eiyP- 354 (794)
T KOG0276|consen 297 LGREEPAVS------MDSNGKIIWAVHSEIQAVNLKSVGA-------QK-EVTDGERLPLSVKEL-------GSVEIYP- 354 (794)
T ss_pred ccCCCCcee------ecCCccEEEEcCceeeeeeceeccC-------cc-cccCCccccchhhhc-------cccccch-
Confidence 234333333 3334458999999987555432211 11 123454443333332 1233455
Q ss_pred CCCCeEEEccCCCEEEEecCCCCceEEEEecCeEEeecCceeEEEEecCcccceecccccCCCCCCCCCCCCchhHHHHH
Q 001416 479 DSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAA 558 (1081)
Q Consensus 479 ~~~~~l~~S~~G~~lav~~~~~~~~~i~~~~~~~~~~~G~~~~~aW~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1081)
+.++|||+|||++|| |+|+|+||+..+||++++|+++.|+|+.++|.||++|+....++ +|+|||.+
T Consensus 355 ---q~L~hsPNGrfV~Vc--gdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~vki--------~knfke~k 421 (794)
T KOG0276|consen 355 ---QTLAHSPNGRFVVVC--GDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKI--------FKNFKEHK 421 (794)
T ss_pred ---HHhccCCCCcEEEEe--cCccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCceEE--------Eecceecc
Confidence 589999999999998 99999999999999999999999999999999999998655543 56677772
Q ss_pred HHHHHHHHHHHHhhccccEEEEEEecCCccceEEeecCCCCCCceeeecceeEEEEEeeccccCcccccccccccccccc
Q 001416 559 AAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLS 638 (1081)
Q Consensus 559 ~~~~~~~~a~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1081)
++..+ ...+.||||+||||++.
T Consensus 422 ---------------------si~~~---------------~~~e~i~gg~Llg~~ss---------------------- 443 (794)
T KOG0276|consen 422 ---------------------SIRPD---------------MSAEGIFGGPLLGVRSS---------------------- 443 (794)
T ss_pred ---------------------ccccc---------------cceeeecCCceEEEEeC----------------------
Confidence 11111 23578999999999998
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEeeeeEEEEEecCccccc
Q 001416 639 GFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRY 718 (1081)
Q Consensus 639 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~~~~~~~v~~y~~~~gs 718 (1081)
.+++||||++++|+|+|++.+|+++|+++|.+|+++..+++||++|+.. ..
T Consensus 444 ----------------------------~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d-~v 494 (794)
T KOG0276|consen 444 ----------------------------DFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNAD-AV 494 (794)
T ss_pred ----------------------------CeEEEEEcccceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHH-HH
Confidence 7999999999999999999999999999999999999999999999876 21
Q ss_pred ccccccccccceeeEeeeeeEeccCceEEEeeeCCccccchhhhhhhhhhhhHHhhhhHhhhccceeeeeecccchhhhc
Q 001416 719 LGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD 798 (1081)
Q Consensus 719 l~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~ 798 (1081)
+.-+ +.-...++++|+.+|.+- -+-+++|..|.|| +|+++|+
T Consensus 495 ~~a~------------e~g~~v~eeGiedAfevL-------------gE~sE~v~tg~Wv---gD~fiyt---------- 536 (794)
T KOG0276|consen 495 ANAV------------EQGIEVTEEGIEDAFEVL-------------GEVSESVKTGKWV---GDCFIYT---------- 536 (794)
T ss_pred HHHH------------hcCCCCcchhHHHHHHHH-------------hhhhhheeeceee---eeEEEEe----------
Confidence 1110 111123566777777662 2447899999999 6887664
Q ss_pred ccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcE
Q 001416 799 RIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLV 878 (1081)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 878 (1081)
-..++++|++||+.+++.|++ +|+|
T Consensus 537 ------------------------------------------------ts~nrlnY~vgGe~~~v~h~~-------~~my 561 (794)
T KOG0276|consen 537 ------------------------------------------------TSNNRLNYLVGGETYTVAHLD-------RIMY 561 (794)
T ss_pred ------------------------------------------------ecccceeEEcCCceEEEEEec-------cchh
Confidence 233456789999999999999 9999
Q ss_pred Eeee--ecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhcCcHHHHhccccchH
Q 001416 879 VVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISK 956 (1081)
Q Consensus 879 ~~~~--~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~~~~yA~~le~lv~ 956 (1081)
++|+ +++++||.||++++++|.+.+.+++||++++++|+..+...++.++++++.++++||+++||.+.|++|. .++
T Consensus 562 lLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s-~D~ 640 (794)
T KOG0276|consen 562 LLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELS-TDP 640 (794)
T ss_pred heeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcC-CCh
Confidence 9996 8999999999999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred HHHHHHHHhhhhHHHHhhhhcccchhhhcCC--------------CCCcccccccccccccccchHHHHhhhHHHH----
Q 001416 957 RLEFDLAMQSNDLKRALQCLITMSNSRDIGQ--------------DHPGLDLNDILTLTTKKENIVEAVQGIVKFA---- 1018 (1081)
Q Consensus 957 ert~~L~~ek~k~~~ll~~~lp~~va~~l~~--------------~~~ti~fsdivgft~~~s~p~~vv~~ln~ly---- 1018 (1081)
++||+|+++.|+++.+...++..+...+|+| .+|.-..-|.+|+.-.++.--.. ++|+.|.
T Consensus 641 d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~-~~l~~la~~~~ 719 (794)
T KOG0276|consen 641 DQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNA-EGLAVLASLAK 719 (794)
T ss_pred hhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCCh-hHHHHHHHHHH
Confidence 9999999999999999999999999888888 57888899999998222222222 4455554
Q ss_pred ------HHHHHHhhhhhhhchhhhHHHHHHHHhhcccchhhccchhhccccccccccccceeeeccc
Q 001416 1019 ------KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSVRF 1079 (1081)
Q Consensus 1019 ------t~fd~ii~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1081)
..|.+-...-|+.+|.+|+.+..|.|+|+.+++.||++.+.+.+.| |+-.|++.+.++
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~---wk~~l~k~~~k~ 783 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVEL---WKEDLSKVSEKA 783 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHH---HHHHhhhhhhhh
Confidence 6899999999999999999999999999999999999999999999 888888776654
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-62 Score=552.49 Aligned_cols=686 Identities=18% Similarity=0.293 Sum_probs=540.7
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
+..|...+.+|++++|||..+|++++..+|.|++||++.+.++..|..|
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH------------------------------- 50 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH------------------------------- 50 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-------------------------------
Confidence 3568889999999999999999999999999999999998888877743
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
.++|+.++|+|+++ +|++|+||..+ +|++++. +++.++.+
T Consensus 51 ------------------------------------dGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~r--rclftL~G 91 (1202)
T KOG0292|consen 51 ------------------------------------DGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTR--RCLFTLLG 91 (1202)
T ss_pred ------------------------------------CCccceeeecCCCC-eEEecCCccEEEEEecccc--eehhhhcc
Confidence 44577888999988 99999999998 4999986 57888999
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|.++|+.+.| ++.-++|+++|+|.+|+||+|++++++..++ ||.++|+|.+ |+|..++++|+|.|.+||||
T Consensus 92 HlDYVRt~~F-----HheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAq---FhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 92 HLDYVRTVFF-----HHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQ---FHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ccceeEEeec-----cCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeec---cCCccceEEEecccceEEEE
Confidence 9999999999 5789999999999999999999999999998 9999999998 69999999999999999999
Q ss_pred EcCCCCc--------------------cc---ccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc
Q 001416 243 SADHGQD--------------------SR---ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1081)
Q Consensus 243 d~~~~~~--------------------~~---~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~ 299 (1081)
|+..-+. +. ....++.++||+.+|+.++|+| .-++|+||++|+.|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp---TlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP---TLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC---CcceEEecCCcceeeEEEecccc
Confidence 9963110 00 2234567899999999999999 89999999999999999998776
Q ss_pred eeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEE
Q 001416 300 ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMV 376 (1081)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~ 376 (1081)
... +.++++|.++|.++-|||...+| +.|+|. ||||++. ..+++++..... +.|+++
T Consensus 240 aWE----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k---------------Rt~v~tfrrend-RFW~la 299 (1202)
T KOG0292|consen 240 AWE----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK---------------RTSVQTFRREND-RFWILA 299 (1202)
T ss_pred cee----ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc---------------ccceeeeeccCC-eEEEEE
Confidence 653 36789999999999999988855 889995 8999986 566778876666 999999
Q ss_pred EeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCCCCCCCceEEEEecCcEEEEEEeecCCCCCCCCCCcccCCCCCcC
Q 001416 377 AHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLK 456 (1081)
Q Consensus 377 ~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~l~~~~~~~~~g~~~ 456 (1081)
.||. .+++|+|.+.|.+++..+ |++|..+.. ....+|++++.++.++|....+.. +.
T Consensus 300 ahP~-lNLfAAgHDsGm~VFkle-RErpa~~v~-------~n~LfYvkd~~i~~~d~~t~~d~~-v~------------- 356 (1202)
T KOG0292|consen 300 AHPE-LNLFAAGHDSGMIVFKLE-RERPAYAVN-------GNGLFYVKDRFIRSYDLRTQKDTA-VA------------- 356 (1202)
T ss_pred ecCC-cceeeeecCCceEEEEEc-ccCceEEEc-------CCEEEEEccceEEeeeccccccce-eE-------------
Confidence 9998 899999999999866665 556655433 456899999999988886422211 00
Q ss_pred CCchhHHhhhhcccccccccCCCCCCeEEEccCCCEEEEecC-CCCceEEEEecCe-------EEeecCceeEEEEecCc
Q 001416 457 GDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWP-DIPYFSVYKVSDW-------SIVDSGSARLLAWDTCR 528 (1081)
Q Consensus 457 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~S~~G~~lav~~~-~~~~~~i~~~~~~-------~~~~~G~~~~~aW~~~~ 528 (1081)
..+..++++.++ ..++++|...-+.++++ +.++|.+|.+.+. .....|++....| ..+
T Consensus 357 -----------~lr~~g~~~~~~--~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~f-var 422 (1202)
T KOG0292|consen 357 -----------SLRRPGTLWQPP--RSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALF-VAR 422 (1202)
T ss_pred -----------eccCCCcccCCc--ceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEE-EEe
Confidence 011122222222 37999999999988876 7799999998754 2234778899999 789
Q ss_pred ccceecccccCCCCCCCCCCCCchh-HHHHHHHHHHHHHHHHHhhccccEEEEEEecCCccceEEeecCCCCCCceeeec
Q 001416 529 DRFAILESALTPRLPIIPKGGSSRK-AKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHG 607 (1081)
Q Consensus 529 ~~~a~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 607 (1081)
|+||+++++.. .+.+++.+|...| .+.+ + ....++..|+++++..+ .
T Consensus 423 Nrfavl~k~~~-~v~ik~l~N~vtkkl~~~------------------~-~~~~IF~ag~g~lll~~-----~------- 470 (1202)
T KOG0292|consen 423 NRFAVLDKSNE-QVVIKNLKNKVTKKLLLP------------------E-STDDIFYAGTGNLLLRS-----P------- 470 (1202)
T ss_pred cceEEEEecCc-ceEEecccchhhhcccCc------------------c-cccceeeccCccEEEEc-----C-------
Confidence 99999998633 3445666665443 1111 0 12334455555554442 1
Q ss_pred ceeEEEEEeeccccCccccccccccccccccccCCCCCccccccCCCCCCCCCCCCCCCccEEEEeeccccccCCCCC-C
Q 001416 608 GALLGVAYRTSRRISPIAATAISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLP-Q 686 (1081)
Q Consensus 608 g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~ 686 (1081)
..|.+||-++...+..+-. .
T Consensus 471 -----------------------------------------------------------~~v~lfdvQq~~~~~si~~s~ 491 (1202)
T KOG0292|consen 471 -----------------------------------------------------------DSVTLFDVQQKKKVGSIKVSK 491 (1202)
T ss_pred -----------------------------------------------------------CeEEEEEeecceEEEEEecCc
Confidence 5788999999888888654 6
Q ss_pred cceeeecccCceEEEeeeeEEEEEecCccccccccccccc-ccceeeEeeeeeE-eccCceEEEeeeCCccccchhhhhh
Q 001416 687 PEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQLFV-VTPTTIECVFVDAGVAAIDVETMKM 764 (1081)
Q Consensus 687 ~k~v~w~~~~~~~~~~~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~~~-~t~~~i~~~~~~~gm~~lh~s~~hg 764 (1081)
+|+|.|+.+...+||++.|.++|...... -++.+.++- .+++.|+....|| +|.+||++++..
T Consensus 492 vkyvvws~dm~~vAll~Kh~i~i~~kkL~--l~~sihEtiriksgawde~gVfiYtT~nHikYal~~------------- 556 (1202)
T KOG0292|consen 492 VKYVVWSNDMSRVALLSKHTITIADKKLE--LLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALEN------------- 556 (1202)
T ss_pred eeEEEEcCccchhhhcccceEEEEecchh--heecchheeEeeeceeccCceEEEEehhhhhhhhcc-------------
Confidence 89999999999999999999999876654 344333332 5679999998888 999999998844
Q ss_pred hhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccc
Q 001416 765 KEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDI 844 (1081)
Q Consensus 765 ~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dv 844 (1081)
+|.|+.
T Consensus 557 -----------------GD~GIi--------------------------------------------------------- 562 (1202)
T KOG0292|consen 557 -----------------GDSGII--------------------------------------------------------- 562 (1202)
T ss_pred -----------------CCcceE---------------------------------------------------------
Confidence 343321
Q ss_pred cccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhh
Q 001416 845 EERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWA 924 (1081)
Q Consensus 845 ys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 924 (1081)
..|+ .|+|+..++++.||++||+..+..++++++.++|+.+..++++.+..-..
T Consensus 563 -------------------kTLd-------~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI 616 (1202)
T KOG0292|consen 563 -------------------KTLD-------KPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLI 616 (1202)
T ss_pred -------------------Eecc-------cceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHH
Confidence 1466 89999999999999999999999999999999999999999888876655
Q ss_pred c---ccCcccHHHHHHHHHhcCcHHHHhccccchHHHHHHHHHhhhhHHHHhhhhcccchhh---hcCC-----------
Q 001416 925 S---RLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSR---DIGQ----------- 987 (1081)
Q Consensus 925 ~---~~~r~~~~~i~~~l~~~~~~~yA~~le~lv~ert~~L~~ek~k~~~ll~~~lp~~va~---~l~~----------- 987 (1081)
. ..++ .|..+|++.|+.+.|+|+.. ++..||+|++|.|++|.+|+.+....-++ +|++
T Consensus 617 ~ns~LvGq----aiIaYLqKkgypeiAL~FVk-D~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~Ia 691 (1202)
T KOG0292|consen 617 KNSNLVGQ----AIIAYLQKKGYPEIALHFVK-DERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIA 691 (1202)
T ss_pred HhcCcccH----HHHHHHHhcCCcceeeeeec-CcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHH
Confidence 4 3555 89999999999999999984 99999999999999999999887655554 4443
Q ss_pred C---CCccccccccccc-------ccccchHHHHhhhHHHHHHHHHHhhhhhhhchhhhHHHH
Q 001416 988 D---HPGLDLNDILTLT-------TKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREA 1040 (1081)
Q Consensus 988 ~---~~ti~fsdivgft-------~~~s~p~~vv~~ln~lyt~fd~ii~~~d~~~~~~~~~~~ 1040 (1081)
| +-|-+|- =+.|. -..+..|..++.=||.-+.|..-+=+-||.+-..|+..+
T Consensus 692 Em~yQ~~knfe-kLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 692 EMCYQRTKNFE-KLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENG 753 (1202)
T ss_pred HHHHHHhhhhh-heeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhc
Confidence 1 1122332 23333 246777888888888888888888888888877777654
No 3
>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-62 Score=555.95 Aligned_cols=340 Identities=14% Similarity=0.062 Sum_probs=285.3
Q ss_pred eeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEeccCceEEEeeeCCccccchhhh--
Q 001416 690 TAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-- 762 (1081)
Q Consensus 690 v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-- 762 (1081)
++..+|+|++.|+ .++.++|++||++ |||+|++.++.+++||.|+.+| ..|+++||.|||.|+|
T Consensus 1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~r-Gsl~D~i~~~~~~~d~~F~~s~--------~rdi~~Gl~ylh~s~i~~ 71 (484)
T KOG1023|consen 1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSR-GSLLDILSNEDIKLDYFFILSF--------IRDISKGLAYLHNSPIGY 71 (484)
T ss_pred CcccchhhhhhheeeEecCCceEEEEeeecC-ccHHhHHhccccCccHHHHHHH--------HHHHHHHHHHHhcCccee
Confidence 4567899999999 7999999999999 9999999999999999999999 9999999999999999
Q ss_pred hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcc
Q 001416 763 KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPK 842 (1081)
Q Consensus 763 hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 842 (1081)
||+|+++||+||+||++|++||||..++............+..+| |+|||+++....+... ....++|
T Consensus 72 hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~l--------w~aPellr~~~~~~~~----~~~~~~g 139 (484)
T KOG1023|consen 72 HGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALL--------WTAPELLRGALSQSLE----SALTQKG 139 (484)
T ss_pred eeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHh--------ccCHHHhccccccccc----ccccccC
Confidence 999999999999999999999999998643111112222334556 9999999986544431 2245567
Q ss_pred cccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccce-ecccccccHHHHH
Q 001416 843 DIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRC-RCLAAYGDSVSAV 921 (1081)
Q Consensus 843 dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 921 (1081)
|||||+||++|++.|.+||....+.... ..-.+. +.++ -..++++.+... ........++++|
T Consensus 140 diYs~~ii~~ei~~r~~~~~~~~~~~~~---~eii~~--~~~~-----------~~~~~rP~i~~~~e~~~~l~~l~~~c 203 (484)
T KOG1023|consen 140 DIYSFGIIMYEILFRSGPFDLRNLVEDP---DEIILR--VKKG-----------GSNPFRPSIELLNELPPELLLLVARC 203 (484)
T ss_pred CeehHHHHHHHHHhccCccccccccCCh---HHHHHH--HHhc-----------CCCCcCcchhhhhhcchHHHHHHHHh
Confidence 8999999999999999999876554210 000000 1110 011122222211 3444567899999
Q ss_pred hhhcccCcccHHHHHHHHHhcC----------------cHHHHhccccchHHHHHHHHHhhhhHHHHhhhhcccchhhhc
Q 001416 922 KWASRLGREHHDDLAQFMLGMG----------------YATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDI 985 (1081)
Q Consensus 922 ~~~~~~~r~~~~~i~~~l~~~~----------------~~~yA~~le~lv~ert~~L~~ek~k~~~ll~~~lp~~va~~l 985 (1081)
|.++|+.||.+.+|+..++.++ ||+||+|||.+|+|||.+|.+|++|+|.||++|||++||++|
T Consensus 204 w~e~P~~rPs~~~i~~~~~~~~~~~~~~~nl~D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~l 283 (484)
T KOG1023|consen 204 WEEIPEKRPSIEQIRSKLLTINKGGSSKGNLMDSLFRMLESYADNLEKLVDERTAELEEEKKKTDTLLGQMLPKSVAESL 283 (484)
T ss_pred cccChhhCccHHHHHhhhhhhcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHh
Confidence 9999999999999999988543 899999999999999999999999999999999999999999
Q ss_pred CC---------CCCccccccccccc--ccccchHHHHhhhHHHHHHHHHHhhhhhhhchhhhHHHHHHHHhhcccchhhc
Q 001416 986 GQ---------DHPGLDLNDILTLT--TKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGAL 1054 (1081)
Q Consensus 986 ~~---------~~~ti~fsdivgft--~~~s~p~~vv~~ln~lyt~fd~ii~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1081)
|. ++|||||||||||| |+.|+|+|||++||||||+||.||+.+|+|++++|++ |||++|++|..+|..
T Consensus 284 k~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGD-aYmvvSglp~~n~~~ 362 (484)
T KOG1023|consen 284 KLGKTVDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGD-AYMVVSGLPIRNGYR 362 (484)
T ss_pred hcCCcCCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccCc-ceeecccCceecHhH
Confidence 88 89999999999999 9999999999999999999999999999999999999 999999999999999
Q ss_pred cchhhcccccccc
Q 001416 1055 QGHELRGLALRLA 1067 (1081)
Q Consensus 1055 ~~~~~~~~~~~~~ 1067 (1081)
|..+++.|||.+-
T Consensus 363 H~~eia~msl~~~ 375 (484)
T KOG1023|consen 363 HAREIASMALGLR 375 (484)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-41 Score=353.67 Aligned_cols=325 Identities=21% Similarity=0.301 Sum_probs=280.3
Q ss_pred eeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeec
Q 001416 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.+.||.+.|.|++|+|+|..|+||+.|.++|+||+.|..+..+.+ +|.+++.++ +||++.||+|+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~------------ 176 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGS------------ 176 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccc------------
Confidence 578999999999999999999999999999999999999999999 678999998 99999999986
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCC-----CCCeEEEEEecCcEE-EEEecCCCcccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGRHFLVICCVNKAI-FLDLVTMRGRDI 157 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp-----~g~~~l~s~s~d~~i-~wd~~t~~~~~~ 157 (1081)
.||+|++||..+++. .-..+.+| ..+|++++|.| ..+ .+++++.|+.+ +||...+ .++
T Consensus 177 ---------~dg~I~lwdpktg~~---~g~~l~gH-~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~--~~~ 240 (480)
T KOG0271|consen 177 ---------KDGSIRLWDPKTGQQ---IGRALRGH-KKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLG--TCV 240 (480)
T ss_pred ---------cCCeEEEecCCCCCc---ccccccCc-ccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCc--eEE
Confidence 699999999999986 34566777 88999999976 444 67777777666 5999875 467
Q ss_pred cccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEe---------eeCCCCC
Q 001416 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF---------MASSGEA 228 (1081)
Q Consensus 158 ~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~---------~~s~d~~ 228 (1081)
....+|..+|+|+.| ....++++||.|++|++|+...|.+.+.+. ||.+.|+.++ + .|.+.++
T Consensus 241 ~~lsgHT~~VTCvrw------GG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~la-lsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRW------GGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLA-LSTDYVLRTGAFDHTGR 312 (480)
T ss_pred EEeccCccceEEEEE------cCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeee-ccchhhhhccccccccc
Confidence 778999999999999 345689999999999999999999999998 9999999997 3 1223333
Q ss_pred -------------------------EEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEE
Q 001416 229 -------------------------LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1081)
Q Consensus 229 -------------------------~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvs 283 (1081)
.+++||.|.++.+|+....+ +|...+.+|..-|+.+.|+| |+.++++
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSP---d~r~IAS 384 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSP---DGRYIAS 384 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECC---CccEEEE
Confidence 49999999999999976544 23445789999999999999 9999999
Q ss_pred EECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCC
Q 001416 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVP 360 (1081)
Q Consensus 284 gs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~ 360 (1081)
+|.|+.|++||.++|+.+.++ ++|-..|+.++|+.|.++| +||.|. ++|++++ .+.
T Consensus 385 aSFDkSVkLW~g~tGk~lasf------RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---------------kKl 443 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASF------RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---------------KKL 443 (480)
T ss_pred eecccceeeeeCCCcchhhhh------hhccceeEEEEeccCccEEEEcCCCceEEEEEeee---------------eee
Confidence 999999999999999988765 8999999999999999976 788886 6899986 233
Q ss_pred CeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 361 ~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
..-+.+|.+ .|.++.|+|| +..+++|+.|..+ ++|.
T Consensus 444 ~~DLpGh~D-EVf~vDwspD-G~rV~sggkdkv~-~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHAD-EVFAVDWSPD-GQRVASGGKDKVL-RLWR 479 (480)
T ss_pred cccCCCCCc-eEEEEEecCC-CceeecCCCceEE-Eeec
Confidence 345678988 9999999999 6677999999995 9994
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=299.95 Aligned_cols=287 Identities=20% Similarity=0.234 Sum_probs=244.5
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
-++|+||.++|.++.|++|.+.|++++.||.+.|||.-|...++-+...
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------------------------------- 96 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------------------------------- 96 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-------------------------------
Confidence 4789999999999999999999999999999999998876655554411
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCc----cccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----RDIP 158 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~----~~~~ 158 (1081)
..+|..++|+|.|+ ++++|+-|... +|++.+.+. ....
T Consensus 97 ------------------------------------s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 97 ------------------------------------SSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred ------------------------------------ceeEEEEEECCCCC-eEEecCcCceeEEEecccccccccceeee
Confidence 45688999999998 77777766655 798876521 2233
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCC-CCCEEEEEeCCC
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDG 237 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~-d~~~l~sgs~Dg 237 (1081)
.+.+|..++.|+.| .+...|+|+|.|.+..+||+++++.+..|. ||.+.|+++. .+| +++.|+||+.|+
T Consensus 140 ~l~gHtgylScC~f------~dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sls---l~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRF------LDDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLS---LSPSDGNTFVSGGCDK 209 (343)
T ss_pred eecCccceeEEEEE------cCCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEe---cCCCCCCeEEeccccc
Confidence 46789999999999 457789999999999999999999999997 9999999998 577 999999999999
Q ss_pred cEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCe
Q 001416 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1081)
Q Consensus 238 ~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v 317 (1081)
+.++||++.+.+.+ ++.+|+..|++|.|+| +|.-+++|++|+++++||++..+.+..+.. ..-..+|
T Consensus 210 ~aklWD~R~~~c~q------tF~ghesDINsv~ffP---~G~afatGSDD~tcRlyDlRaD~~~a~ys~----~~~~~gi 276 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQ------TFEGHESDINSVRFFP---SGDAFATGSDDATCRLYDLRADQELAVYSH----DSIICGI 276 (343)
T ss_pred ceeeeeccCcceeE------eecccccccceEEEcc---CCCeeeecCCCceeEEEeecCCcEEeeecc----CcccCCc
Confidence 99999999998665 4799999999999999 999999999999999999999999888743 3334589
Q ss_pred EEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 318 WCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 318 ~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
++++||-.|++| +|..|. .+||.-. ...+..+.+|.+ +|+|+..+|+ +..+++|+.|..+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk---------------~e~vg~L~GHeN-RvScl~~s~D-G~av~TgSWDs~l 339 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK---------------GERVGVLAGHEN-RVSCLGVSPD-GMAVATGSWDSTL 339 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc---------------cceEEEeeccCC-eeEEEEECCC-CcEEEecchhHhe
Confidence 999999999988 555564 6999765 344567889999 9999999999 7778999999996
Q ss_pred EEEeC
Q 001416 395 ISEFD 399 (1081)
Q Consensus 395 l~iwd 399 (1081)
+||.
T Consensus 340 -riW~ 343 (343)
T KOG0286|consen 340 -RIWA 343 (343)
T ss_pred -eecC
Confidence 9994
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-36 Score=312.77 Aligned_cols=296 Identities=22% Similarity=0.259 Sum_probs=251.0
Q ss_pred CCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccC
Q 001416 52 GGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS 129 (1081)
Q Consensus 52 ~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fs 129 (1081)
+|...+.++ +|++..|++|+ .|.++|+||+.+... ..+..+| ..+|.+++|+
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGs---------------------GD~TvR~WD~~TeTp----~~t~KgH-~~WVlcvaws 166 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGS---------------------GDTTVRLWDLDTETP----LFTCKGH-KNWVLCVAWS 166 (480)
T ss_pred CCCCcEEEEEecCCCceEEecC---------------------CCceEEeeccCCCCc----ceeecCC-ccEEEEEEEC
Confidence 566666666 89999999986 589999999999874 6677888 9999999999
Q ss_pred CCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEe
Q 001416 130 TKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT 208 (1081)
Q Consensus 130 p~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~ 208 (1081)
|||+ .|++|+.++.+ +||.++++. ....+.+|...|++++|.|.+..|...++++++.||.|+|||...++++..+.
T Consensus 167 PDgk-~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 167 PDGK-KIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred CCcc-hhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 9998 88888888777 599998863 34567899999999999999888899999999999999999999999999997
Q ss_pred cccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeee--------------
Q 001416 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV-------------- 274 (1081)
Q Consensus 209 ~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~-------------- 274 (1081)
||+.+|+|++|- ...++++||.|++|++|+...|.+.++ +++|..+|+.++.+..
T Consensus 245 -gHT~~VTCvrwG----G~gliySgS~DrtIkvw~a~dG~~~r~------lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 245 -GHTASVTCVRWG----GEGLIYSGSQDRTIKVWRALDGKLCRE------LKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred -cCccceEEEEEc----CCceEEecCCCceEEEEEccchhHHHh------hcccchheeeeeccchhhhhcccccccccc
Confidence 999999999972 456999999999999999999887765 7999999999988720
Q ss_pred -------------------cCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECC
Q 001416 275 -------------------MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKD 334 (1081)
Q Consensus 275 -------------------~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D 334 (1081)
.+.++.|++|++|.++.+|+-...+ +++..+.+|..-|+.+.||||+++| ++|.|
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 0133569999999999999965332 2344569999999999999999988 67888
Q ss_pred c--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 335 S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 335 ~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
. ++|+-++ ++.+.+|.+|-. .|+.++|+.| .+|+++|+.|.++ ++||+++.+....+
T Consensus 389 kSVkLW~g~t---------------Gk~lasfRGHv~-~VYqvawsaD-sRLlVS~SkDsTL-Kvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 389 KSVKLWDGRT---------------GKFLASFRGHVA-AVYQVAWSAD-SRLLVSGSKDSTL-KVWDVRTKKLKQDL 447 (480)
T ss_pred cceeeeeCCC---------------cchhhhhhhccc-eeEEEEeccC-ccEEEEcCCCceE-EEEEeeeeeecccC
Confidence 5 7999987 455668889998 9999999998 8999999999995 99998876554444
No 7
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=9.3e-37 Score=350.28 Aligned_cols=376 Identities=19% Similarity=0.250 Sum_probs=264.7
Q ss_pred CeEEEccCCCEEEEecCCCCceEEEEecCeEEeecCceeEEEEecCcccceecccccCCCCCCCCCCCCchhHHHHHHHH
Q 001416 482 SILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAAAAA 561 (1081)
Q Consensus 482 ~~l~~S~~G~~lav~~~~~~~~~i~~~~~~~~~~~G~~~~~aW~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1081)
+.++|||+||+++|+ |+|+|.||+..+|+++.+|++.+++|.. +++||++++..+.+| +++++++
T Consensus 36 ~~ls~npngr~v~V~--g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~~~~I~I--------~kn~~~~---- 100 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVC--GDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLESSSTIKI--------YKNFKNE---- 100 (443)
T ss_dssp SEEEE-TTSSEEEEE--ETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-TTS-EEE--------EETTEE-----
T ss_pred eeEEECCCCCEEEEE--cCCEEEEEEccCCcccccCceeEEEEec-CccEEEEECCCeEEE--------EEcCccc----
Confidence 489999999999997 9999999999999999999999999976 899999998544443 2333333
Q ss_pred HHHHHHHHHhhccccEEEEEEecCCccceEEeecCCCCCCceeeecceeEEEEEeeccccCccccccccccccccccccC
Q 001416 562 AAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGFG 641 (1081)
Q Consensus 562 ~~~~~a~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1081)
.+ .++..+ .+++.||||.|||++..
T Consensus 101 --------------~~-k~i~~~---------------~~~~~If~G~LL~~~~~------------------------- 125 (443)
T PF04053_consen 101 --------------VV-KSIKLP---------------FSVEKIFGGNLLGVKSS------------------------- 125 (443)
T ss_dssp --------------TT------S---------------S-EEEEE-SSSEEEEET-------------------------
T ss_pred --------------cc-eEEcCC---------------cccceEEcCcEEEEECC-------------------------
Confidence 10 011111 35688999999999988
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCccEEEEeeccccccCCCCCCc-ceeeecccCceEEEeeeeEEEEEecCccccccc
Q 001416 642 SSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQP-EWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLG 720 (1081)
Q Consensus 642 ~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-k~v~w~~~~~~~~~~~~~~~~v~~y~~~~gsl~ 720 (1081)
.+|+||||++.+++|+|...+ |.|.|++++++|++++.+.++|++|..+ -..+
T Consensus 126 -------------------------~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~-~~~~ 179 (443)
T PF04053_consen 126 -------------------------DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLE-AVAA 179 (443)
T ss_dssp -------------------------TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH-HHHH
T ss_pred -------------------------CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecch-hccc
Confidence 689999999999999999985 9999999999999999999999999876 2211
Q ss_pred ccccccccceeeEeeeeeEeccCceEEEeeeCCccccchhhhhhhhhhhhHHhhhhHhhhccceeeeeecccchhhhccc
Q 001416 721 DVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRI 800 (1081)
Q Consensus 721 d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~ 800 (1081)
.++.+.+-.|... .+.+..+.++.|+ .|+++|+ +..
T Consensus 180 ----~~~~g~e~~f~~~----------------------------~E~~~~IkSg~W~---~d~fiYt------T~~--- 215 (443)
T PF04053_consen 180 ----IPEEGVEDAFELI----------------------------HEISERIKSGCWV---EDCFIYT------TSN--- 215 (443)
T ss_dssp ----BTTTB-GGGEEEE----------------------------EEE-S--SEEEEE---TTEEEEE-------TT---
T ss_pred ----ccccCchhceEEE----------------------------EEecceeEEEEEE---cCEEEEE------cCC---
Confidence 1122222222210 1113467778888 5677765 111
Q ss_pred ccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEe
Q 001416 801 KLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVV 880 (1081)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 880 (1081)
.+.|+.+|+...+.+++ +|+|++
T Consensus 216 --------------------------------------------------~lkYl~~Ge~~~i~~ld-------~~~yll 238 (443)
T PF04053_consen 216 --------------------------------------------------HLKYLVNGETGIIAHLD-------KPLYLL 238 (443)
T ss_dssp --------------------------------------------------EEEEEETTEEEEEEE-S-------S--EEE
T ss_pred --------------------------------------------------eEEEEEcCCcceEEEcC-------CceEEE
Confidence 23456688888899999 899999
Q ss_pred eeec--CeEEEEeccccccccCCCCcccceecccccccHHH------HHhhhcccCcccHHHHHHHHHhcCcHHHHhccc
Q 001416 881 GVKD--GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVS------AVKWASRLGREHHDDLAQFMLGMGYATEALHLP 952 (1081)
Q Consensus 881 ~~~~--~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~r~~~~~i~~~l~~~~~~~yA~~le 952 (1081)
|+.. +++|++||+.++.+++|++++++|++++.++|+.+ +-...+.+|.++.+++++||+++||.+.|+++.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc
Confidence 9977 99999999999999999999999999999999999 366666799999999999999999999999999
Q ss_pred cchHHHHHHHHHhhhhHHHHhhhhcccchhhhcCC--------------CCCccccccccccc---ccc------cchHH
Q 001416 953 GISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQ--------------DHPGLDLNDILTLT---TKK------ENIVE 1009 (1081)
Q Consensus 953 ~lv~ert~~L~~ek~k~~~ll~~~lp~~va~~l~~--------------~~~ti~fsdivgft---~~~------s~p~~ 1009 (1081)
.++++||+|++|.|++|.|++.+......++|+| +.|---..|.-|+. ++. +..++
T Consensus 319 -~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 319 -TDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -S-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHH
T ss_pred -CChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHH
Confidence 6999999999999999999999999998888888 34444456777766 221 12222
Q ss_pred HHhhhHHHHHHHHHHhhhhhhhchhhhHHHHHHHHhhcccchhhcc
Q 001416 1010 AVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQ 1055 (1081)
Q Consensus 1010 vv~~ln~lyt~fd~ii~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1081)
.-.-=+|+=..|-+-+-.-|+.+|.+|+.++.+.|+|+.+++.|.+
T Consensus 398 ~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 398 IAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 2222234456788888889999999999999999999999998753
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.9e-35 Score=310.02 Aligned_cols=278 Identities=22% Similarity=0.282 Sum_probs=247.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccC--CCeEEEeecCCCCCceeeecC
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAK--LEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~--~~~lasg~~d~~~~~~~~l~g 84 (1081)
|-+.+|..+.|++++..|+||+.+|.++||+..+...+.+|. +|...+..+ .|. +..+|+++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s------------- 238 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATAS------------- 238 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeec-------------
Confidence 567899999999999999999999999999999999999998 455555554 554 66888876
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~ 163 (1081)
.||++++|++.+... +..+.+| ...|..++|+|+|+ ++.+++.|..-+ ||+.+.. .+..+++|
T Consensus 239 --------~Dgtvklw~~~~e~~----l~~l~gH-~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~--ElL~QEGH 302 (459)
T KOG0272|consen 239 --------ADGTVKLWKLSQETP----LQDLEGH-LARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS--ELLLQEGH 302 (459)
T ss_pred --------cCCceeeeccCCCcc----hhhhhcc-hhhheeeeecCCCc-eeeecccccchhhcccccch--hhHhhccc
Confidence 699999999998763 6677888 68999999999998 888888888885 9999964 66678999
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
...|.+++| ++||.++++|+.|..=+|||+++++++..+. ||...|.++. ++|+|..++|||.|++++|||
T Consensus 303 s~~v~~iaf-----~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~---fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 303 SKGVFSIAF-----QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVA---FSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred ccccceeEe-----cCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEe---ECCCceEEeecCCCCcEEEee
Confidence 999999999 6899999999999999999999999999997 8999999999 599999999999999999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeec
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~s 323 (1081)
++..+. ..++.+|.+-|+.|.|+| ..|.+|+|+|.|++++||...++++++.+ .+|.+.|.++..+
T Consensus 374 LR~r~~------ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~~~~ksL------aGHe~kV~s~Dis 439 (459)
T KOG0272|consen 374 LRMRSE------LYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTWSPLKSL------AGHEGKVISLDIS 439 (459)
T ss_pred eccccc------ceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCcccchhh------cCCccceEEEEec
Confidence 998875 345799999999999999 58999999999999999999999988765 9999999999999
Q ss_pred CCCCEE-EEECCc--eEEE
Q 001416 324 PNLDIL-TCVKDS--HIWA 339 (1081)
Q Consensus 324 pd~~ll-s~s~D~--~IWd 339 (1081)
|+++.+ ++|.|. ++|.
T Consensus 440 ~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCceEEEeccCceeeecc
Confidence 999966 788885 6784
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=292.28 Aligned_cols=269 Identities=20% Similarity=0.219 Sum_probs=237.9
Q ss_pred ccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCC-CCeEEEEE
Q 001416 61 GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK-GRHFLVIC 139 (1081)
Q Consensus 61 s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~-g~~~l~s~ 139 (1081)
+.+++.|++|+ .+|.+++|+..+.. ...++.+| ...|.++.|+|. ...-+++|
T Consensus 184 S~ds~~laT~s---------------------wsG~~kvW~~~~~~----~~~~l~gH-~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 184 SRDSKHLATGS---------------------WSGLVKVWSVPQCN----LLQTLRGH-TSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred ecCCCeEEEee---------------------cCCceeEeecCCcc----eeEEEecc-ccceeeEEEccCCCccceeee
Confidence 78888888876 58999999998875 46788899 889999999998 35578888
Q ss_pred ecCcEEE-EEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEE
Q 001416 140 CVNKAIF-LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCL 218 (1081)
Q Consensus 140 s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l 218 (1081)
+.|+.+. |++.+. ..+..+.+|...|..++| +|+|++|+|+|.|.+-++||+++++.+...+ ||...|.++
T Consensus 238 s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~Vaf-----HPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~i 309 (459)
T KOG0272|consen 238 SADGTVKLWKLSQE--TPLQDLEGHLARVSRVAF-----HPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSI 309 (459)
T ss_pred ccCCceeeeccCCC--cchhhhhcchhhheeeee-----cCCCceeeecccccchhhcccccchhhHhhc-cccccccee
Confidence 8888775 988875 466778999999999999 6899999999999999999999988877665 999999999
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC
Q 001416 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1081)
Q Consensus 219 ~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~ 298 (1081)
+ +.+||.+++||+.|..-||||++++.++ ..|.+|.+.|.+|+|+| +|..|+|||.|++++|||++..
T Consensus 310 a---f~~DGSL~~tGGlD~~~RvWDlRtgr~i------m~L~gH~k~I~~V~fsP---NGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 310 A---FQPDGSLAATGGLDSLGRVWDLRTGRCI------MFLAGHIKEILSVAFSP---NGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred E---ecCCCceeeccCccchhheeecccCcEE------EEecccccceeeEeECC---CceEEeecCCCCcEEEeeeccc
Confidence 9 5999999999999999999999999854 45899999999999999 9999999999999999999998
Q ss_pred ceeeEecCCCccccCCCCeEEEeecC-CCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEE
Q 001416 299 KELRRIKPVPKLACHSVASWCHPRAP-NLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC 374 (1081)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~v~~sp-d~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~ 374 (1081)
+++.++ .+|.+-|+.+.|+| .|.+| ++|.|+ +||.... ..+++++.+|.. +|.+
T Consensus 378 ~~ly~i------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---------------~~~~ksLaGHe~-kV~s 435 (459)
T KOG0272|consen 378 SELYTI------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---------------WSPLKSLAGHEG-KVIS 435 (459)
T ss_pred ccceec------ccccchhhheEecccCCeEEEEcccCcceeeecCCC---------------cccchhhcCCcc-ceEE
Confidence 887665 89999999999999 55554 899997 6898775 677788999999 9999
Q ss_pred EEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 375 MVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 375 l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
+..+|+ +..+++++.|.++ ++|.
T Consensus 436 ~Dis~d-~~~i~t~s~DRT~-KLW~ 458 (459)
T KOG0272|consen 436 LDISPD-SQAIATSSFDRTI-KLWR 458 (459)
T ss_pred EEeccC-CceEEEeccCcee-eecc
Confidence 999998 7778999999997 9995
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-29 Score=285.98 Aligned_cols=430 Identities=17% Similarity=0.249 Sum_probs=304.2
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EEecCCccce-EEe-ccCCCeEEEeecCCCCCc
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY--ELKAGGVDQR-RLV-GAKLEKLAEGELEHKGKP 78 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~--~~~~~~~~~v-~~v-s~~~~~lasg~~d~~~~~ 78 (1081)
.-+++.||.+.|+++.|+.|.++|++|+.|-+++||+++..+-.. .+. +|.+.+ .+. ..+...+.+-+
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvs------- 208 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVS------- 208 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEe-------
Confidence 346789999999999999999999999999999999998665533 333 343333 232 44444444432
Q ss_pred eeeecCCceEEEEEeCCeEEEEEcCCCcccccc-------------------------c----cccccCCCCCeeecccC
Q 001416 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAE-------------------------A----PTAVSNVTSGFASPPPS 129 (1081)
Q Consensus 79 ~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~-------------------------~----~~~~~h~~~~V~sl~fs 129 (1081)
.||.+.+|........... . ...-......|++.+|+
T Consensus 209 --------------kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH 274 (893)
T KOG0291|consen 209 --------------KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH 274 (893)
T ss_pred --------------cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc
Confidence 5888888887621100000 0 00011113689999999
Q ss_pred CCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECC-CeEEEEEcCCCeEEEEE
Q 001416 130 TKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRVLSMISWKLVRRY 207 (1081)
Q Consensus 130 p~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D-g~I~lwd~~~~~~~~~~ 207 (1081)
+... +++++-..+.. .|.+... ..+..+.....+|..++| +..|.+|+.|+.. |.+-+|+|++...+...
T Consensus 275 ~~t~-~lvvgFssG~f~LyelP~f--~lih~LSis~~~I~t~~~-----N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 275 KGTN-LLVVGFSSGEFGLYELPDF--NLIHSLSISDQKILTVSF-----NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred CCce-EEEEEecCCeeEEEecCCc--eEEEEeecccceeeEEEe-----cccCCEEEEcCCccceEEEEEeeccceeeec
Confidence 9765 88888888887 5777654 344455666789999999 6789999999865 89999999988888777
Q ss_pred ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC
Q 001416 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1081)
Q Consensus 208 ~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D 287 (1081)
+ +|...+++++ ++|||.++++|+.||.|+|||..++-|.. ++..|+++|+.+.|+. .++.+++.|-|
T Consensus 347 Q-gH~~~i~~l~---YSpDgq~iaTG~eDgKVKvWn~~SgfC~v------TFteHts~Vt~v~f~~---~g~~llssSLD 413 (893)
T KOG0291|consen 347 Q-GHSDRITSLA---YSPDGQLIATGAEDGKVKVWNTQSGFCFV------TFTEHTSGVTAVQFTA---RGNVLLSSSLD 413 (893)
T ss_pred c-ccccceeeEE---ECCCCcEEEeccCCCcEEEEeccCceEEE------EeccCCCceEEEEEEe---cCCEEEEeecC
Confidence 6 9999999998 69999999999999999999999988654 5789999999999999 99999999999
Q ss_pred CeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc---eEEEeccCCcccccccccccCCCCCCeE
Q 001416 288 KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQV 363 (1081)
Q Consensus 288 g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~---~IWdi~~~~~~~~~~~~~~~~~~~~~~~ 363 (1081)
|+|+.||+...+..+++.... .....|++..|.|.++ +|+.|. .||++++ +..+-.
T Consensus 414 GtVRAwDlkRYrNfRTft~P~-----p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT---------------GqllDi 473 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPE-----PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT---------------GQLLDI 473 (893)
T ss_pred CeEEeeeecccceeeeecCCC-----ceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---------------Ceeeeh
Confidence 999999999999888874322 1234599999999987 566663 6899986 334446
Q ss_pred EccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCC-CcccCC--------CCCCCCceEEEEecCcEEEEEEe
Q 001416 364 LAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA-VAPLPT--------PSGSRDHSAVYIVERELKLVNFQ 434 (1081)
Q Consensus 364 l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~l~l~~~~ 434 (1081)
+.+|.. +|.+++|+|+ +.+|++|+.|.+| ++||+-.... +-+++. +...++.-++...++++.+++.+
T Consensus 474 LsGHEg-PVs~l~f~~~-~~~LaS~SWDkTV-RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 474 LSGHEG-PVSGLSFSPD-GSLLASGSWDKTV-RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred hcCCCC-cceeeEEccc-cCeEEeccccceE-EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 789999 9999999998 6688999999997 9999866422 112211 12234555666777888887765
Q ss_pred ecCCCCCCCCCCcccCCCCCcCCCchhHHhhhhcccccccccCCCCCCeEEEccCCCEEEEecCCCCceEEEEecCe
Q 001416 435 LSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDW 511 (1081)
Q Consensus 435 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~S~~G~~lav~~~~~~~~~i~~~~~~ 511 (1081)
...... +.+|+.....++.-+.....+ ..........+.+|+||.++... +.+..+-+|.+..-
T Consensus 551 ~~~q~~---------~IdgrkD~~~gR~~~D~~ta~---~sa~~K~Ftti~ySaDG~~IlAg-G~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 551 EAVQVG---------SIDGRKDLSGGRKETDRITAE---NSAKGKTFTTICYSADGKCILAG-GESNSICIYDVPEG 614 (893)
T ss_pred hceeec---------cccchhhccccccccceeehh---hcccCCceEEEEEcCCCCEEEec-CCcccEEEEECchh
Confidence 432211 122322221111111000000 01111222579999999999443 34455668887653
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1e-30 Score=259.99 Aligned_cols=282 Identities=17% Similarity=0.269 Sum_probs=241.7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCC
Q 001416 25 WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWR 104 (1081)
Q Consensus 25 ~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~ 104 (1081)
+|+|+++|.+||+|...+|.|.++++-.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~---------------------------------------------------- 39 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHP---------------------------------------------------- 39 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecC----------------------------------------------------
Confidence 8889999999999999999988888711
Q ss_pred CccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEE
Q 001416 105 NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLV 184 (1081)
Q Consensus 105 ~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l 184 (1081)
++.|+.+...|+++ .|++++.-++.+||+++.+...+..+++|.+.|+.+.| .-+|+++
T Consensus 40 ---------------dsqVNrLeiTpdk~-~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF-----~~dgrWM 98 (311)
T KOG0315|consen 40 ---------------DSQVNRLEITPDKK-DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF-----QCDGRWM 98 (311)
T ss_pred ---------------ccceeeEEEcCCcc-hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE-----eecCeEE
Confidence 33467788889887 88888999998999999887788889999999999999 6799999
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCC
Q 001416 185 AFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1081)
Q Consensus 185 ~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~ 264 (1081)
++|++||+++|||++...+.+.+ .|..+|+++. .+|+...|++|..+|.|++||+....+..++. ..-..
T Consensus 99 yTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vv---lhpnQteLis~dqsg~irvWDl~~~~c~~~li-----Pe~~~ 168 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVV---LHPNQTELISGDQSGNIRVWDLGENSCTHELI-----PEDDT 168 (311)
T ss_pred EecCCCceEEEEeccCcccchhc--cCCCCcceEE---ecCCcceEEeecCCCcEEEEEccCCccccccC-----CCCCc
Confidence 99999999999999997777777 4889999997 68999999999999999999999887666542 23346
Q ss_pred cEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEec
Q 001416 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIE 341 (1081)
Q Consensus 265 ~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~ 341 (1081)
.|.++...| ++.+++.+...|++.+|++.+.+....+.|+.++..|..-+..+.+|||+++| ++|.|. +||+.+
T Consensus 169 ~i~sl~v~~---dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 169 SIQSLTVMP---DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred ceeeEEEcC---CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 799999999 99999999999999999999988888889999999999999999999999988 677785 789987
Q ss_pred cCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 342 HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
.- . +....+.+|.. .+|..+||.+ +.+|++|+.|+.+ ++||+...+.+...
T Consensus 246 ~~-~-------------kle~~l~gh~r-WvWdc~FS~d-g~YlvTassd~~~-rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 246 DF-F-------------KLELVLTGHQR-WVWDCAFSAD-GEYLVTASSDHTA-RLWDLSAGKEVRQY 296 (311)
T ss_pred Cc-e-------------eeEEEeecCCc-eEEeeeeccC-ccEEEecCCCCce-eecccccCceeeec
Confidence 52 1 22246778887 9999999998 6677999999996 99998876655443
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.5e-28 Score=265.62 Aligned_cols=439 Identities=15% Similarity=0.163 Sum_probs=290.5
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EEecCCccceEEe--ccCCCeEEEeecCCCCCce
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY--ELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~--~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~ 79 (1081)
.-.+..|...++-..|+|.|-|+|+|+..|+|||||....+.+- +|+.- ...+.-+ +.+++.|+..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGE------- 123 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGE------- 123 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEec-------
Confidence 34678999999999999999999999999999999986544332 33321 1223333 566666655431
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccc
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~ 158 (1081)
|.= .=|.+-+|| ++.. .-...+| ...|.++.|-|..+..+++|++|..+- |+-.-. +-..
T Consensus 124 -----Gre-----rfg~~F~~D--SG~S----vGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF--KFk~ 184 (603)
T KOG0318|consen 124 -----GRE-----RFGHVFLWD--SGNS----VGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF--KFKS 184 (603)
T ss_pred -----Ccc-----ceeEEEEec--CCCc----cceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe--eeee
Confidence 110 113334455 4432 3456677 788999999999999999999999985 643322 2223
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEe--cccccceEEEEEeeeCCCCCEEEEEeCC
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~--~~h~~~V~~l~w~~~s~d~~~l~sgs~D 236 (1081)
....|...|+|+.| +|||.++++.+.||+|.+||-.+++.+..+. .+|++.|.++.| +||+..|+|+|.|
T Consensus 185 s~r~HskFV~~VRy-----sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW---sPDs~~~~T~SaD 256 (603)
T KOG0318|consen 185 SFREHSKFVNCVRY-----SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW---SPDSTQFLTVSAD 256 (603)
T ss_pred cccccccceeeEEE-----CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE---CCCCceEEEecCC
Confidence 35678889999999 7899999999999999999999999998884 479999999997 8999999999999
Q ss_pred CcEEEEEcCCCCccccc-------------------------------------ccceeecccCCcEEEEEEeeecCCCC
Q 001416 237 GLLILWSADHGQDSREL-------------------------------------VPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 237 g~V~vWd~~~~~~~~~~-------------------------------------~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
.++||||+.+.++++++ .+...+.||.+.|+++..+| ++.
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~---d~~ 333 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP---DGK 333 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC---CCC
Confidence 99999999876543222 12344679999999999999 889
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCceEEEecc--CCcccccccccccCC
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH--PTYSALTRPLCELSS 357 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~~IWdi~~--~~~~~~~~~~~~~~~ 357 (1081)
+|.+|+.||.|.-||..++..-+.. -.+|+..|.+++-+..+.++++|.|..||-+.- ..+....
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~~~~-----g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~-------- 400 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSDRLA-----GKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE-------- 400 (603)
T ss_pred EEEeeccCceEEEEecCCccccccc-----cccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc--------
Confidence 9999999999999999988753321 267999999999999899999999987766542 1111110
Q ss_pred CCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCCCC------CCCceEEEEecCcEEEE
Q 001416 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSG------SRDHSAVYIVERELKLV 431 (1081)
Q Consensus 358 ~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~l~ 431 (1081)
...+ +.++. +++..++ +.+++..+.++.+ .+=|.+. +..++.-.. +....-+.+...+-++.
T Consensus 401 ---~~~l---g~QP~-~lav~~d-~~~avv~~~~~iv-~l~~~~~---~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 401 ---VVKL---GSQPK-GLAVLSD-GGTAVVACISDIV-LLQDQTK---VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred ---eeec---CCCce-eEEEcCC-CCEEEEEecCcEE-EEecCCc---ceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 0001 11122 4555555 3333444444443 2322221 111111000 11111222222222222
Q ss_pred EEeecCCCCCCCCCCcccCCCCCcCCCchhHHhhhhcccccccccCCCCCCeEEEccCCCEEEEecCCCCceEEEEecCe
Q 001416 432 NFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDW 511 (1081)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~S~~G~~lav~~~~~~~~~i~~~~~~ 511 (1081)
-|.++.... . ++ ..... +.... +.+++||||.|+|++ .-.++..+|++...
T Consensus 469 vysl~g~~l---------~----------ee------~~~~~-h~a~i--T~vaySpd~~yla~~-Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 469 VYSLSGDEL---------K----------EE------AKLLE-HRAAI--TDVAYSPDGAYLAAG-DASRKVVLYDVASR 519 (603)
T ss_pred EEEecCCcc---------c----------ce------eeeec-ccCCc--eEEEECCCCcEEEEe-ccCCcEEEEEcccC
Confidence 232221100 0 00 00000 00111 479999999999887 45688999998664
Q ss_pred EEe------ecCceeEEEEecCcccceec
Q 001416 512 SIV------DSGSARLLAWDTCRDRFAIL 534 (1081)
Q Consensus 512 ~~~------~~G~~~~~aW~~~~~~~a~l 534 (1081)
..+ ..++.+.++|+|....+|.=
T Consensus 520 ~~~~~~w~FHtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 520 EVKTNRWAFHTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred ceecceeeeeeeeEEEEEeCCCceEEEec
Confidence 322 37789999999987766643
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.1e-30 Score=259.15 Aligned_cols=296 Identities=15% Similarity=0.200 Sum_probs=235.0
Q ss_pred ccceeeCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc---EEEEEecCCccceEEeccCCCeEEEeecCCCCC
Q 001416 2 LRLKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQ---VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~lafsp~-g~~Lasgs~dg~I~IWd~~t~~---~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~ 77 (1081)
..++.++||+++|..++|||. |..||||+.|..||||+...+. +...+.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld--------------------------- 57 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD--------------------------- 57 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc---------------------------
Confidence 346789999999999999998 8899999999999999986321 111111
Q ss_pred ceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccc
Q 001416 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD 156 (1081)
Q Consensus 78 ~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~ 156 (1081)
.+| ...|++++|+|.|+ ++++++.|... +|.-..++..+
T Consensus 58 --------------------------------------~~h-krsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efec 97 (312)
T KOG0645|consen 58 --------------------------------------DGH-KRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFEC 97 (312)
T ss_pred --------------------------------------ccc-hheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeE
Confidence 122 56789999999998 88888888877 58666677778
Q ss_pred ccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC---CeEEEEEecccccceEEEEEeeeCCCCCEEEEE
Q 001416 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS---WKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1081)
Q Consensus 157 ~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~---~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sg 233 (1081)
+..+++|...|.|++| +++|.+||+++.|..|-||.... ..+...++ +|...|..+.| +|...+|+|+
T Consensus 98 v~~lEGHEnEVK~Vaw-----s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~W---HPt~dlL~S~ 168 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAW-----SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIW---HPTEDLLFSC 168 (312)
T ss_pred EeeeeccccceeEEEE-----cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEE---cCCcceeEEe
Confidence 8889999999999999 78999999999999999999863 46777887 99999999986 7888899999
Q ss_pred eCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccC
Q 001416 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1081)
Q Consensus 234 s~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h 313 (1081)
|.|++|++|+-..+. .+....++.+|+..|.+++|+| .|..|+++++|++|+||...+.- ...|
T Consensus 169 SYDnTIk~~~~~~dd---dW~c~~tl~g~~~TVW~~~F~~---~G~rl~s~sdD~tv~Iw~~~~~~----------~~~~ 232 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDD---DWECVQTLDGHENTVWSLAFDN---IGSRLVSCSDDGTVSIWRLYTDL----------SGMH 232 (312)
T ss_pred ccCCeEEEEeecCCC---CeeEEEEecCccceEEEEEecC---CCceEEEecCCcceEeeeeccCc----------chhc
Confidence 999999999877422 2345667899999999999999 89999999999999999976322 2467
Q ss_pred CCCeEEEeecCCCCEEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECC
Q 001416 314 SVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNV 391 (1081)
Q Consensus 314 ~~~v~~v~~spd~~lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~d 391 (1081)
+..++.++|. ++-+.++++|+ +|+.-....-.+....+. ..-..|.. .|++++|.|..+++|++|++|
T Consensus 233 sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~--------~~~~aHe~-dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 233 SRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLA--------KKEGAHEV-DVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred ccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHH--------hhhccccc-ccceEEEcCCCCCceeecCCC
Confidence 8889999998 66677888886 566544311111110000 01234666 999999999768889999999
Q ss_pred CeEEEEeCC
Q 001416 392 GVIISEFDP 400 (1081)
Q Consensus 392 G~Il~iwd~ 400 (1081)
|.+ ++|.+
T Consensus 303 G~v-~~W~l 310 (312)
T KOG0645|consen 303 GIV-NFWEL 310 (312)
T ss_pred ceE-EEEEe
Confidence 996 99974
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.1e-31 Score=274.81 Aligned_cols=288 Identities=19% Similarity=0.281 Sum_probs=248.5
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..+.||...|+.+-|||+...+++++.|++|++||+.++++...++.+
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-------------------------------- 149 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-------------------------------- 149 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc--------------------------------
Confidence 346789999999999999999999999999999999998876666632
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~ 163 (1081)
.+.+..+.|+..|+ .+++++.|-.+ .||..+. ..++....+|
T Consensus 150 -----------------------------------t~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh 192 (406)
T KOG0295|consen 150 -----------------------------------TDSVFDISFDASGK-YLATCSSDLSAKLWDFDTF-FRCIKSLIGH 192 (406)
T ss_pred -----------------------------------ccceeEEEEecCcc-EEEecCCccchhheeHHHH-HHHHHHhcCc
Confidence 22356777777887 78888888755 6998875 4577778899
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
...|.+++|. |.|.+|++++.|.+|+.|+..++-++.++. +|...|..++ ...||.++++++.|.+|++|-
T Consensus 193 ~h~vS~V~f~-----P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~---v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 193 EHGVSSVFFL-----PLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVR---VNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred ccceeeEEEE-----ecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEE---ecCCeeEEEecCCCceEEEEE
Confidence 9999999996 468999999999999999999999999998 9999999998 699999999999999999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeec------------CCCCEEEEEECCCeEEEEECCCCceeeEecCCCccc
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVM------------GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~------------~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~ 311 (1081)
+.++++..+ +..|+.+|.+++|.|.. +.++++.+++.|++|++||+.++.++-++ .
T Consensus 264 ~~t~~~k~~------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL------~ 331 (406)
T KOG0295|consen 264 VATKQCKAE------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL------V 331 (406)
T ss_pred eccchhhhh------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE------e
Confidence 999876554 68999999999998731 23479999999999999999999999876 8
Q ss_pred cCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEE
Q 001416 312 CHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1081)
Q Consensus 312 ~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatg 388 (1081)
+|.++|..++|+|.|++| ++.+|. ++||++. ..++.++..|.. -|+++.|+.+.+ ++++|
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~---------------~~cmk~~~ah~h-fvt~lDfh~~~p-~VvTG 394 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN---------------LQCMKTLEAHEH-FVTSLDFHKTAP-YVVTG 394 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc---------------ceeeeccCCCcc-eeEEEecCCCCc-eEEec
Confidence 999999999999999977 777776 7999997 455667777777 899999999855 67999
Q ss_pred ECCCeEEEEeCC
Q 001416 389 TNVGVIISEFDP 400 (1081)
Q Consensus 389 s~dG~Il~iwd~ 400 (1081)
+-|..+ ++|..
T Consensus 395 sVdqt~-KvwEc 405 (406)
T KOG0295|consen 395 SVDQTV-KVWEC 405 (406)
T ss_pred ccccee-eeeec
Confidence 999996 99974
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=7.7e-30 Score=258.31 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=231.4
Q ss_pred ccceeeCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCcee
Q 001416 2 LRLKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~ 80 (1081)
+..-+++||++.|+.++..+.++ .+++++.|.++.+|++.... .+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----~~------------------------------ 51 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----IK------------------------------ 51 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----cc------------------------------
Confidence 34557899999999999999854 89999999999999986420 00
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
.+. ..+.+.+| ...|..+..++||+ ++++++.|+.++ ||+.+++ ....
T Consensus 52 -----------------------~G~----~~r~~~GH-sH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~--~t~~ 100 (315)
T KOG0279|consen 52 -----------------------YGV----PVRRLTGH-SHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE--STRR 100 (315)
T ss_pred -----------------------cCc----eeeeeecc-ceEecceEEccCCc-eEEeccccceEEEEEecCCc--EEEE
Confidence 000 12233444 55678888999998 666777666665 9999974 5566
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCC--CCEEEEEeCCC
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG--EALLVSGGSDG 237 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d--~~~l~sgs~Dg 237 (1081)
+.+|...|.+++| ++|...+++||.|.+|++||............+|.+.|.|++ |+|+ ..+++++|.|+
T Consensus 101 f~GH~~dVlsva~-----s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr---fsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 101 FVGHTKDVLSVAF-----STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR---FSPNESNPIIVSASWDK 172 (315)
T ss_pred EEecCCceEEEEe-----cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE---EcCCCCCcEEEEccCCc
Confidence 8999999999999 789999999999999999999865444444434589999999 3555 78999999999
Q ss_pred cEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCe
Q 001416 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1081)
Q Consensus 238 ~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v 317 (1081)
+|++||+++-+... .+.||++.++.++++| ||.++++|+.||.+.+||++.++.++.+ .|...|
T Consensus 173 tvKvWnl~~~~l~~------~~~gh~~~v~t~~vSp---DGslcasGgkdg~~~LwdL~~~k~lysl-------~a~~~v 236 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRT------TFIGHSGYVNTVTVSP---DGSLCASGGKDGEAMLWDLNEGKNLYSL-------EAFDIV 236 (315)
T ss_pred eEEEEccCCcchhh------ccccccccEEEEEECC---CCCEEecCCCCceEEEEEccCCceeEec-------cCCCeE
Confidence 99999999876443 4689999999999999 9999999999999999999999998875 788899
Q ss_pred EEEeecCCCCEEEEECC--ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEE
Q 001416 318 WCHPRAPNLDILTCVKD--SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1081)
Q Consensus 318 ~~v~~spd~~lls~s~D--~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il 395 (1081)
.+++|+|+...|....+ .+|||+.....-.... .+..+. ... .......+++|+++ +..|.+|..|+.|
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~--~d~~g~----s~~-~~~~~clslaws~d-G~tLf~g~td~~i- 307 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK--LDGIGP----SSK-AGDPICLSLAWSAD-GQTLFAGYTDNVI- 307 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhhhhcc--cccccc----ccc-cCCcEEEEEEEcCC-CcEEEeeecCCcE-
Confidence 99999999987754433 5899998632111100 000000 111 12225677899999 4555999999996
Q ss_pred EEeCCC
Q 001416 396 SEFDPR 401 (1081)
Q Consensus 396 ~iwd~~ 401 (1081)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999754
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=289.88 Aligned_cols=350 Identities=22% Similarity=0.310 Sum_probs=269.6
Q ss_pred ceeeCC-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--cc--CCCeEEEeecCCCCCc
Q 001416 4 LKAFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GA--KLEKLAEGELEHKGKP 78 (1081)
Q Consensus 4 l~~l~g-H~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~--~~~~lasg~~d~~~~~ 78 (1081)
++.+++ |+.+|.-++|+|.+..|++|+.||.++|||+..+.+...|+.+ ...+..+ .| ....|++|.
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~-gGvVssl~F~~~~~~~lL~sg~------- 168 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH-GGVVSSLLFHPHWNRWLLASGA------- 168 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC-CceEEEEEeCCccchhheeecC-------
Confidence 345556 9999999999999999999999999999999999999999953 3444444 33 333455543
Q ss_pred eeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCccc-c
Q 001416 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD-I 157 (1081)
Q Consensus 79 ~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~-~ 157 (1081)
.|+++++||+.+... +..+...| .+.|++++|++|+..++.+|.+.-+++||+.+.+... +
T Consensus 169 --------------~D~~v~vwnl~~~~t---cl~~~~~H-~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 169 --------------TDGTVRVWNLNDKRT---CLHTMILH-KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred --------------CCceEEEEEcccCch---HHHHHHhh-hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence 499999999997664 46677777 8889999999998865555555555579874321100 0
Q ss_pred c-------------------------------------------------------------------------------
Q 001416 158 P------------------------------------------------------------------------------- 158 (1081)
Q Consensus 158 ~------------------------------------------------------------------------------- 158 (1081)
+
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 0
Q ss_pred -------ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEE
Q 001416 159 -------KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1081)
Q Consensus 159 -------~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~ 231 (1081)
.+.+..+.|..+.|. .|+.+++++++..+.+|+|+..+..+. +..||+..|+++. ...+|.+|+
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l----G~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~---~~~~g~lla 381 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL----GPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLD---VWSSGDLLA 381 (775)
T ss_pred cccEEehhhcCCchhheeeeec----CCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeee---ecccCcEEE
Confidence 000233456667765 578899999999999999999887666 4459999999998 345678999
Q ss_pred EEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceee---EecCCC
Q 001416 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR---RIKPVP 308 (1081)
Q Consensus 232 sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~---~~~~~~ 308 (1081)
|||.|+++++|.++.+.... .+.....+|++.|.+++++. ....+|+++|.|+++++|++...++-. .+..-.
T Consensus 382 t~sKD~svilWr~~~~~~~~--~~~a~~~gH~~svgava~~~--~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKS--LCVAQANGHTNSVGAVAGSK--LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EecCCceEEEEEecCCcchh--hhhhhhcccccccceeeecc--cCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 99999999999995544322 13444679999999999987 467899999999999999997633221 111222
Q ss_pred ccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEE
Q 001416 309 KLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLV 385 (1081)
Q Consensus 309 ~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~ll 385 (1081)
....|...|+|++.+|+..++ +||.|. +||++.. .....++.+|.. .|||+.|+|. .+++
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---------------~~l~~vLsGH~R-Gvw~V~Fs~~-dq~l 520 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---------------LRLLGVLSGHTR-GVWCVSFSKN-DQLL 520 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccC---------------ceEEEEeeCCcc-ceEEEEeccc-ccee
Confidence 457899999999999999988 678885 7999984 445568999999 9999999998 8889
Q ss_pred EEEECCCeEEEEeCCCCCCCCcccC
Q 001416 386 ATGTNVGVIISEFDPRSLPAVAPLP 410 (1081)
Q Consensus 386 atgs~dG~Il~iwd~~~~~~~~~~~ 410 (1081)
+|++.|++| +||.+.++..+.++.
T Consensus 521 aT~SgD~Tv-KIW~is~fSClkT~e 544 (775)
T KOG0319|consen 521 ATCSGDKTV-KIWSISTFSCLKTFE 544 (775)
T ss_pred EeccCCceE-EEEEeccceeeeeec
Confidence 999999997 999999887777664
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=289.92 Aligned_cols=349 Identities=17% Similarity=0.237 Sum_probs=267.4
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-ccceEEe----ccCCCeEEEeecCC----
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGG-VDQRRLV----GAKLEKLAEGELEH---- 74 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~-~~~v~~v----s~~~~~lasg~~d~---- 74 (1081)
+.++.+|.+.|++++|++++.-+++++.|..+.|||+.+.+..+++.... ...+..+ +..+.++.+.+.++
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~ 264 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY 264 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence 45678999999999999999999999999999999997766655444211 1111111 01122333322211
Q ss_pred -----------------------------------------------CCCceeeecC--CceEEEEE------------e
Q 001416 75 -----------------------------------------------KGKPTEAMRG--GSVKQVNF------------Y 93 (1081)
Q Consensus 75 -----------------------------------------------~~~~~~~l~g--~~V~~v~f------------~ 93 (1081)
+.++...+.| ..|.+++| .
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 0011111122 44555555 5
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCC--cccccccccCCCCeeEE
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMR--GRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~--~~~~~~~~~~~~~I~~i 170 (1081)
...+|++++.+..+ ....+| ...|.++....+| .++++|+.|+.++ |.++... ..++....+|...|.++
T Consensus 345 s~~lr~y~~~~~~c-----~ii~GH-~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav 417 (775)
T KOG0319|consen 345 SPELRLYTLPTSYC-----QIIPGH-TEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV 417 (775)
T ss_pred CCceEEEecCCCce-----EEEeCc-hhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee
Confidence 67889998888775 367777 8888998855556 4899999888875 9774432 23455567899999999
Q ss_pred EEeeccccCCCCEEEEEECCCeEEEEEcCCCe-----EEE---EEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-----LVR---RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~-----~~~---~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
+++ .....+++++|.|+++++|++...+ .+. .....|...|+|++ .+|+..+++|||.|++.++|
T Consensus 418 a~~----~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va---ia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 418 AGS----KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA---IAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred eec----ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE---ecCCCceEEecccccceeee
Confidence 994 2345689999999999999996521 111 11247999999999 69999999999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
++..... ..++.||+.+|.||.|+| ..+.++|+|.|++|+||.+.++.|++++ .+|+..|..+.|
T Consensus 491 ~le~~~l------~~vLsGH~RGvw~V~Fs~---~dq~laT~SgD~TvKIW~is~fSClkT~------eGH~~aVlra~F 555 (775)
T KOG0319|consen 491 DLEQLRL------LGVLSGHTRGVWCVSFSK---NDQLLATCSGDKTVKIWSISTFSCLKTF------EGHTSAVLRASF 555 (775)
T ss_pred cccCceE------EEEeeCCccceEEEEecc---ccceeEeccCCceEEEEEeccceeeeee------cCccceeEeeee
Confidence 9996553 346899999999999999 7889999999999999999999999987 899999999999
Q ss_pred cCCCC-EEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 323 APNLD-ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 323 spd~~-lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
-.++. +++++.|| +||++++ ..+..++..|.+ +||+++.+|. ...+++|+.||.| .+|.
T Consensus 556 ~~~~~qliS~~adGliKlWnikt---------------~eC~~tlD~H~D-rvWaL~~~~~-~~~~~tgg~Dg~i-~~wk 617 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKT---------------NECEMTLDAHND-RVWALSVSPL-LDMFVTGGGDGRI-IFWK 617 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccc---------------hhhhhhhhhccc-eeEEEeecCc-cceeEecCCCeEE-EEee
Confidence 98887 66999998 7999997 566778889999 9999999998 5588999999997 6884
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=277.20 Aligned_cols=350 Identities=15% Similarity=0.179 Sum_probs=270.8
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe-ccCCCeEEEeecCCCCCceeeec
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV-GAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v-s~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
..|......|++.+||+....|++|=.+|...++++....+++.+..+........ +..|..||.|+
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~------------ 326 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC------------ 326 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC------------
Confidence 44555668999999999999999999999999999999999999886543322222 77799999875
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
+ .-|.+-+|++.+... .-..++| ...+.+++++|||+ ++++|++|+.+ +||.+++ .++.++..
T Consensus 327 -~-------klgQLlVweWqsEsY----VlKQQgH-~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg--fC~vTFte 390 (893)
T KOG0291|consen 327 -S-------KLGQLLVWEWQSESY----VLKQQGH-SDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG--FCFVTFTE 390 (893)
T ss_pred -C-------ccceEEEEEeeccce----eeecccc-ccceeeEEECCCCc-EEEeccCCCcEEEEeccCc--eEEEEecc
Confidence 1 257899999998764 4455667 78899999999998 77777777666 6998875 68888999
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCC-cEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG-LLIL 241 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg-~V~v 241 (1081)
|...|+.+.| +..++.+++.|-||+|+.||+...+..++|+....-...|++ ..|.|.++.+|+.|. .|.+
T Consensus 391 Hts~Vt~v~f-----~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva---vD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 391 HTSGVTAVQF-----TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA---VDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred CCCceEEEEE-----EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE---EcCCCCEEEeeccceEEEEE
Confidence 9999999999 678999999999999999999999999999866666677787 689999999999987 5999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC-ceeeEecCCCccccCCCCeEEE
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~-~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
|++++|+.+.. +.||+++|.+++|+| .+..|+|+|.|++||+||+-.. ..+.++ .+...+..+
T Consensus 463 WS~qTGqllDi------LsGHEgPVs~l~f~~---~~~~LaS~SWDkTVRiW~if~s~~~vEtl-------~i~sdvl~v 526 (893)
T KOG0291|consen 463 WSVQTGQLLDI------LSGHEGPVSGLSFSP---DGSLLASGSWDKTVRIWDIFSSSGTVETL-------EIRSDVLAV 526 (893)
T ss_pred EEeecCeeeeh------hcCCCCcceeeEEcc---ccCeEEeccccceEEEEEeeccCceeeeE-------eeccceeEE
Confidence 99999986653 799999999999999 9999999999999999998543 223332 456678899
Q ss_pred eecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCC-eEEc---cCCCccEEEEEEeCCCCeEEEEEECCCe
Q 001416 321 PRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPP-QVLA---HHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1081)
Q Consensus 321 ~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~-~~l~---~~~~~~V~~l~~sp~~~~llatgs~dG~ 393 (1081)
+|+|+|+-| +++-|| .+||+.............+..++... -.+. .......+.+++++| +..|.+|+....
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD-G~~IlAgG~sn~ 605 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD-GKCILAGGESNS 605 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC-CCEEEecCCccc
Confidence 999999966 556675 68998864222111112222221111 1111 112238999999999 556678888888
Q ss_pred EEEEeCCCCCCCCcc
Q 001416 394 IISEFDPRSLPAVAP 408 (1081)
Q Consensus 394 Il~iwd~~~~~~~~~ 408 (1081)
| .++|+.+.-.+..
T Consensus 606 i-CiY~v~~~vllkk 619 (893)
T KOG0291|consen 606 I-CIYDVPEGVLLKK 619 (893)
T ss_pred E-EEEECchhheeee
Confidence 6 8999887544443
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=276.46 Aligned_cols=277 Identities=18% Similarity=0.247 Sum_probs=229.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEE
Q 001416 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1081)
Q Consensus 11 ~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v 90 (1081)
...|..|.|.|+|+.|++|+..|.+.+|+..+ |.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~------fn---------------------------------------- 129 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS------FN---------------------------------------- 129 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce------ee----------------------------------------
Confidence 35788999999999999999999999999632 11
Q ss_pred EEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCC-CCee
Q 001416 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDN-KSLV 168 (1081)
Q Consensus 91 ~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~-~~I~ 168 (1081)
...+...| ++.|+++.|++++. ++++|..++.+. |+.+-. .++....|. ..|+
T Consensus 130 --------------------FEtilQaH-Ds~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 130 --------------------FETILQAH-DSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIR 184 (464)
T ss_pred --------------------HHHHhhhh-cccceeEEEccCCC-EEEEcCCCceEEecccchh---hhHHhhHhhhhhhh
Confidence 01233444 78899999999997 889999888885 876643 344444554 8999
Q ss_pred EEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 001416 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~ 248 (1081)
+++| +|+...++++|+||+|+|||....+.-..+. ||.-.|.|++| +|...++++||.|..|++||.++++
T Consensus 185 dlaf-----SpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdW---HP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 185 DLAF-----SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDW---HPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred eecc-----CCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceecc---CCccceeEEccCCceeEeecCCCcc
Confidence 9999 7788899999999999999998877777776 99999999998 6888899999999999999999999
Q ss_pred cccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-
Q 001416 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD- 327 (1081)
Q Consensus 249 ~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~- 327 (1081)
++.. +.+|+..|..+.|+| ++++|+|+|.|..++++|+++.+.++++ ++|...|+++.|||-..
T Consensus 256 cl~t------lh~HKntVl~~~f~~---n~N~Llt~skD~~~kv~DiR~mkEl~~~------r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 256 CLAT------LHGHKNTVLAVKFNP---NGNWLLTGSKDQSCKVFDIRTMKELFTY------RGHKKDVTSLTWHPLNES 320 (464)
T ss_pred hhhh------hhhccceEEEEEEcC---CCCeeEEccCCceEEEEehhHhHHHHHh------hcchhhheeecccccccc
Confidence 7764 789999999999999 8899999999999999999988877665 89999999999999665
Q ss_pred EE-EEECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 328 IL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 328 ll-s~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
++ +++.|+. .|.+.. .+|+..+.......||+++|||- ++++|+|++|.++ +.|.
T Consensus 321 lftsgg~Dgsvvh~~v~~---------------~~p~~~i~~AHd~~iwsl~~hPl-Ghil~tgsnd~t~-rfw~ 378 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGL---------------EEPLGEIPPAHDGEIWSLAYHPL-GHILATGSNDRTV-RFWT 378 (464)
T ss_pred ceeeccCCCceEEEeccc---------------cccccCCCcccccceeeeecccc-ceeEeecCCCcce-eeec
Confidence 55 6888885 466652 22223333333349999999998 8999999999997 9997
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=8.1e-29 Score=266.47 Aligned_cols=326 Identities=19% Similarity=0.246 Sum_probs=258.1
Q ss_pred eeeCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC--cEEE--EEe---------cCCccceEEe--ccCCCeEE
Q 001416 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHR--QVIY--ELK---------AGGVDQRRLV--GAKLEKLA 68 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~--~~i~--~~~---------~~~~~~v~~v--s~~~~~la 68 (1081)
+.+. |..+|.+.+|+|-.. .+++|+.|-..++|++... .+.. .++ ......+..+ +.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3344 999999999999877 9999999999999998741 1111 111 0011234444 55677777
Q ss_pred EeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEE
Q 001416 69 EGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLD 148 (1081)
Q Consensus 69 sg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd 148 (1081)
+|+ +||.+|+|+..... ..++..| .++|.++.|+.+|.+++.++-++.+++||
T Consensus 252 tG~---------------------~~G~~riw~~~G~l-----~~tl~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 252 TGS---------------------EDGEARIWNKDGNL-----ISTLGQH-KGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred Eee---------------------cCcEEEEEecCchh-----hhhhhcc-CCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 764 79999999998775 4455556 89999999999998666666666666799
Q ss_pred ecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCC
Q 001416 149 LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA 228 (1081)
Q Consensus 149 ~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~ 228 (1081)
..++.. ...+..|..+-..+.| .+..-+++++.||.|+++-+....++.++. ||.+.|.++.| .|.+.
T Consensus 305 ~~~g~~--~q~f~~~s~~~lDVdW------~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~---n~tg~ 372 (524)
T KOG0273|consen 305 AHTGTV--KQQFEFHSAPALDVDW------QSNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKW---NPTGS 372 (524)
T ss_pred ccCceE--EEeeeeccCCccceEE------ecCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEE---CCCCc
Confidence 988753 3446777777788999 456779999999999999999889999998 89999999995 89999
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeec------CCCCEEEEEECCCeEEEEECCCCceee
Q 001416 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM------GGSPQLITIGADKTLAIWDTVSFKELR 302 (1081)
Q Consensus 229 ~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~------~~~~~Lvsgs~Dg~V~iWDl~t~~~~~ 302 (1081)
+|+|+|.|+|++||......+... +.+|+..|..+.|+|.. ..+..+++++.|++|++||+..+.++.
T Consensus 373 LLaS~SdD~TlkiWs~~~~~~~~~------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQSNSVHD------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH 446 (524)
T ss_pred eEEEecCCCeeEeeecCCCcchhh------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE
Confidence 999999999999999988775554 78999999999999831 245689999999999999999999998
Q ss_pred EecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeC
Q 001416 303 RIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1081)
Q Consensus 303 ~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp 379 (1081)
++ ..|..+|++++|+|+|+++ +|+.|+ .||+++.. ...+.+.+ ...|..++|+.
T Consensus 447 ~f------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~---------------~l~~s~~~--~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 447 TL------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG---------------KLVKSYQG--TGGIFELCWNA 503 (524)
T ss_pred ee------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccch---------------heeEeecC--CCeEEEEEEcC
Confidence 86 8999999999999999988 577787 58998852 23333432 23699999999
Q ss_pred CCCeEEEEEECCCeEEEEeCCC
Q 001416 380 LQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 380 ~~~~llatgs~dG~Il~iwd~~ 401 (1081)
+ +..|..+..||.+ .+.|+|
T Consensus 504 ~-G~kl~~~~sd~~v-cvldlr 523 (524)
T KOG0273|consen 504 A-GDKLGACASDGSV-CVLDLR 523 (524)
T ss_pred C-CCEEEEEecCCCc-eEEEec
Confidence 8 4677888888886 777765
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=256.72 Aligned_cols=334 Identities=16% Similarity=0.135 Sum_probs=273.1
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~ 81 (1081)
+..|..|++.|.+++.||+.++++||+.|..-.||++.+|....++. +|.+.+.++ +.++.+||+|.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGd---------- 125 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGD---------- 125 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecC----------
Confidence 57899999999999999999999999999999999999999888887 555666666 89999999986
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~ 160 (1081)
.+|.|++|+..++... ..+. ..-..+.=+.|+|.+. ++++|++|+.+ +|.+.+. ...+..
T Consensus 126 -----------msG~v~v~~~stg~~~----~~~~-~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~ 186 (399)
T KOG0296|consen 126 -----------MSGKVLVFKVSTGGEQ----WKLD-QEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVM 186 (399)
T ss_pred -----------CCccEEEEEcccCceE----EEee-cccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEe
Confidence 6899999999988741 1121 2245567788999887 77777777776 5988775 345567
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
.+|..+++|-.| .|+|+.+++|..||+|++||.++++++..+.........++. .+..+..+++|+.++.++
T Consensus 187 ~Gh~~~ct~G~f-----~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~---~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 187 SGHNSPCTCGEF-----IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS---LNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred cCCCCCcccccc-----cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc---cccccceeEeccCCccEE
Confidence 889999999999 578999999999999999999999999988755566677776 588889999999999999
Q ss_pred EEEcCCCCccccccc--ceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeE
Q 001416 241 LWSADHGQDSRELVP--KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~--~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~ 318 (1081)
+-+..+++.+....+ ......|+..+.|+.+.|.+..-++.++|+-||+|.|||+...+..+. ..|..+|.
T Consensus 259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-------c~he~~V~ 331 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-------CEHEDGVT 331 (399)
T ss_pred EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-------ccCCCceE
Confidence 998888875543221 111235677788888877655778999999999999999987665333 57888999
Q ss_pred EEeecCCCCEEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEE
Q 001416 319 CHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1081)
Q Consensus 319 ~v~~spd~~lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~ 396 (1081)
.+.|-++..+++++.++ ++||.++ +....++.+|.. .|.+++++|+ .++++++++|++- +
T Consensus 332 ~l~w~~t~~l~t~c~~g~v~~wDaRt---------------G~l~~~y~GH~~-~Il~f~ls~~-~~~vvT~s~D~~a-~ 393 (399)
T KOG0296|consen 332 KLKWLNTDYLLTACANGKVRQWDART---------------GQLKFTYTGHQM-GILDFALSPQ-KRLVVTVSDDNTA-L 393 (399)
T ss_pred EEEEcCcchheeeccCceEEeeeccc---------------cceEEEEecCch-heeEEEEcCC-CcEEEEecCCCeE-E
Confidence 99999966677888887 6799987 455668889998 9999999998 8888999999995 8
Q ss_pred EeCC
Q 001416 397 EFDP 400 (1081)
Q Consensus 397 iwd~ 400 (1081)
+|+.
T Consensus 394 VF~v 397 (399)
T KOG0296|consen 394 VFEV 397 (399)
T ss_pred EEec
Confidence 8874
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.9e-27 Score=253.65 Aligned_cols=452 Identities=17% Similarity=0.214 Sum_probs=306.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEE
Q 001416 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1081)
Q Consensus 15 ~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f 92 (1081)
.-|.-.|.+..++-+ ....|.+-++++......+..| ...+... +|.|.++|+|.
T Consensus 22 ~~ig~dpkgd~ilY~-nGksv~ir~i~~~~~~~iYtEH-~~~vtVAkySPsG~yiASGD--------------------- 78 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYT-NGKSVIIRNIDNPASVDIYTEH-AHQVTVAKYSPSGFYIASGD--------------------- 78 (603)
T ss_pred eEeccCCCCCeEEEe-CCCEEEEEECCCccceeeeccc-cceeEEEEeCCCceEEeecC---------------------
Confidence 345566777766555 3346788888887777666644 4454444 99999999975
Q ss_pred eCCeEEEEEcCCCc-cccccccccccCCCCCeeecccCCCCCeEEEEEecCc----EEEEEecCCCcccccccccCCCCe
Q 001416 93 YDDDVRFWQLWRNR-AAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK----AIFLDLVTMRGRDIPKQELDNKSL 167 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~-~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~----~i~wd~~t~~~~~~~~~~~~~~~I 167 (1081)
..|.|||||..... .++.+.+.+ .++|..++|++++++++++|.... +..||.-+ .+-.+.+|...|
T Consensus 79 ~sG~vRIWdtt~~~hiLKnef~v~----aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~----SvGei~GhSr~i 150 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHILKNEFQVL----AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN----SVGEITGHSRRI 150 (603)
T ss_pred CcCcEEEEeccCcceeeeeeeeec----ccccccceeCCCCcEEEEEecCccceeEEEEecCCC----ccceeeccceeE
Confidence 47999999987643 222233333 456999999999997777765432 22466543 344578999999
Q ss_pred eEEEEeeccccCCCC-EEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 168 VCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 168 ~~ia~~p~~~sp~~~-~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
++++| -|..+ .+++|++|++|.+|+-...+-..++. .|...|.|++ ++|||..|+|++.||+|.+||-.+
T Consensus 151 ns~~~-----KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VR---ysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 151 NSVDF-----KPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVR---YSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeec-----cCCCceEEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEE---ECCCCCeEEEecCCccEEEEcCCC
Confidence 99999 45555 49999999999999987777777776 8999999998 699999999999999999999999
Q ss_pred CCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCC
Q 001416 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~ 326 (1081)
++.+.++.. -.+|++.|.+++|+| |+..++|+|.|.+++|||+.+.++++++....++. ...+ .+.|- ..
T Consensus 222 ge~vg~l~~---~~aHkGsIfalsWsP---Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~--dqqv-G~lWq-kd 291 (603)
T KOG0318|consen 222 GEKVGELED---SDAHKGSIFALSWSP---DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE--DQQV-GCLWQ-KD 291 (603)
T ss_pred ccEEEEecC---CCCccccEEEEEECC---CCceEEEecCCceEEEEEeeccceEEEeecCCchh--ceEE-EEEEe-CC
Confidence 986665321 248999999999999 99999999999999999999999999985544321 1223 33444 55
Q ss_pred CEEEEECCceE--EEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCC
Q 001416 327 DILTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1081)
Q Consensus 327 ~lls~s~D~~I--Wdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~ 404 (1081)
.+|+.|-+|.| ++... ..++.++.+|.+ .|++++.+|++ ..|.+|+.||.| ..||..+..
T Consensus 292 ~lItVSl~G~in~ln~~d---------------~~~~~~i~GHnK-~ITaLtv~~d~-~~i~SgsyDG~I-~~W~~~~g~ 353 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSD---------------PSVLKVISGHNK-SITALTVSPDG-KTIYSGSYDGHI-NSWDSGSGT 353 (603)
T ss_pred eEEEEEcCcEEEEecccC---------------CChhheeccccc-ceeEEEEcCCC-CEEEeeccCceE-EEEecCCcc
Confidence 68888888754 55443 336678899999 99999999995 667999999997 899987754
Q ss_pred CCcccCCCCC--------CCCceEEEE-ecCcEEEEEEeecCCCCC---CCCCC----cccCCCCCcCCCchhHHhhhhc
Q 001416 405 AVAPLPTPSG--------SRDHSAVYI-VERELKLVNFQLSSAANP---SLGNN----GSLSETGRLKGDLPDALQIKQI 468 (1081)
Q Consensus 405 ~~~~~~~~~~--------~~~~~~~~~-~~~~l~l~~~~~~~~~~~---~l~~~----~~~~~~g~~~~~~~~~~~~~~~ 468 (1081)
.-........ .....++.+ -++.++..++..+.-... .++.. .....++..+-.+...+.+.+.
T Consensus 354 ~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 354 SDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred ccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 4322211111 111111212 234455554432222111 01100 0011001111111122211111
Q ss_pred cccc-ccccCCCCCCeEEEccCCCEEEEecCCCCceEEEEecCeE-------EeecCceeEEEEecCcccceeccc
Q 001416 469 KKHI-STPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWS-------IVDSGSARLLAWDTCRDRFAILES 536 (1081)
Q Consensus 469 ~~~i-~~~~~~~~~~~l~~S~~G~~lav~~~~~~~~~i~~~~~~~-------~~~~G~~~~~aW~~~~~~~a~l~~ 536 (1081)
...+ ..+..... +.++++|+|.+++|- +.++.+.||++.+.. ...+|....++++++...+|+-+.
T Consensus 434 ~~~~~~~~~~y~~-s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 434 QTKVSSIPIGYES-SAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred CCcceeecccccc-ceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence 1111 11111111 479999999999886 566779999998743 245889999999999888877765
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=255.82 Aligned_cols=292 Identities=15% Similarity=0.271 Sum_probs=235.3
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.+.+.||.+.|+|+++.|...|++||+.|++++|||+.+|++..++..+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh------------------------------- 192 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH------------------------------- 192 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-------------------------------
Confidence 3568899999999999999999999999999999999999887777632
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
...|..+++|+... ++.++++|+.+ .||+...+ -+....+
T Consensus 193 ------------------------------------i~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nk--vIR~YhG 233 (460)
T KOG0285|consen 193 ------------------------------------IETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNK--VIRHYHG 233 (460)
T ss_pred ------------------------------------hheeeeeeecccCc-eEEEecCCCeeEEEechhhh--hHHHhcc
Confidence 22356677787777 56666666666 59998753 4455678
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|-..|.|++. +|.-..|++|+.|.++|+||+++...+..+. ||..+|.++. +.|-...+++||.|++|++|
T Consensus 234 HlS~V~~L~l-----hPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~---~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 234 HLSGVYCLDL-----HPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVM---CQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred ccceeEEEec-----cccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEE---eecCCCceEEecCCceEEEe
Confidence 8899999999 5678899999999999999999999999997 9999999997 46666789999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
|+..++. ..++..|+..|.+++.+| ....++++|.|. |+-|++..|..++.+ .+|...+.+++.
T Consensus 305 Dl~agkt------~~tlt~hkksvral~lhP---~e~~fASas~dn-ik~w~~p~g~f~~nl------sgh~~iintl~~ 368 (460)
T KOG0285|consen 305 DLRAGKT------MITLTHHKKSVRALCLHP---KENLFASASPDN-IKQWKLPEGEFLQNL------SGHNAIINTLSV 368 (460)
T ss_pred eeccCce------eEeeecccceeeEEecCC---chhhhhccCCcc-ceeccCCccchhhcc------ccccceeeeeee
Confidence 9999873 345788999999999999 888999998875 799999999877654 899999999999
Q ss_pred cCCCCEEEEECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 323 APNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 323 spd~~lls~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
..|+.+++|++.+. .||.+++-.- ...........+. ....|.+.+|... +..|++|..|.+| ++|.-
T Consensus 369 nsD~v~~~G~dng~~~fwdwksg~ny------Q~~~t~vqpGSl~--sEagI~as~fDkt-g~rlit~eadKtI-k~~ke 438 (460)
T KOG0285|consen 369 NSDGVLVSGGDNGSIMFWDWKSGHNY------QRGQTIVQPGSLE--SEAGIFASCFDKT-GSRLITGEADKTI-KMYKE 438 (460)
T ss_pred ccCceEEEcCCceEEEEEecCcCccc------ccccccccCCccc--cccceeEEeeccc-CceEEeccCCcce-EEEec
Confidence 99999999988875 5887763110 0001111112232 2236899999998 4455999999997 89963
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=4.8e-29 Score=284.94 Aligned_cols=319 Identities=18% Similarity=0.226 Sum_probs=242.9
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
.++.--...++|..|++++..||.|-.|..|++|.+...+ ++.++... . ...+-..+
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~--~-------l~~~d~~s------------- 428 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS--D-------LSNIDTES------------- 428 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh--h-------hccccccc-------------
Confidence 3454555789999999999999999999999999997543 22222110 0 00000000
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~ 163 (1081)
.|-.+..-|..+.. ......+| .++|..+.|+|+.+ +|++++.|..++ |.+.+. .++....+|
T Consensus 429 --------ad~~~~~~D~~~~~----~~~~L~GH-~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~--s~~V~y~GH 492 (707)
T KOG0263|consen 429 --------ADVDVDMLDDDSSG----TSRTLYGH-SGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTW--SCLVIYKGH 492 (707)
T ss_pred --------cchhhhhccccCCc----eeEEeecC-CCceeeeeeccccc-ceeeccCCcceeeeecccc--eeEEEecCC
Confidence 11112222322222 23346777 89999999999987 888999888886 998885 355567799
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
..+|+++.| +|.|-|+||+|.|++-++|.....++++.+. ||.+.|.|+. |+|+..++++||.|.+||+||
T Consensus 493 ~~PVwdV~F-----~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~---FHPNs~Y~aTGSsD~tVRlWD 563 (707)
T KOG0263|consen 493 LAPVWDVQF-----APRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVS---FHPNSNYVATGSSDRTVRLWD 563 (707)
T ss_pred CcceeeEEe-----cCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEE---ECCcccccccCCCCceEEEEE
Confidence 999999999 6889999999999999999999889999887 9999999998 799999999999999999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeec
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~s 323 (1081)
+.+|..++. +.||.++|.+++|+| +|.+|++|+.||.|++||+.+++.+..+ .+|++.|.++.|+
T Consensus 564 v~~G~~VRi------F~GH~~~V~al~~Sp---~Gr~LaSg~ed~~I~iWDl~~~~~v~~l------~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 564 VSTGNSVRI------FTGHKGPVTALAFSP---CGRYLASGDEDGLIKIWDLANGSLVKQL------KGHTGTIYSLSFS 628 (707)
T ss_pred cCCCcEEEE------ecCCCCceEEEEEcC---CCceEeecccCCcEEEEEcCCCcchhhh------hcccCceeEEEEe
Confidence 999986554 689999999999999 9999999999999999999999987665 8999999999999
Q ss_pred CCCCEE-EEECCc--eEEEeccCCccccccccc---------ccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEE
Q 001416 324 PNLDIL-TCVKDS--HIWAIEHPTYSALTRPLC---------ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1081)
Q Consensus 324 pd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatg 388 (1081)
.+|.+| ++|.|+ ++||+...........+. .-.....+.++..... +|.++.|... ..++++|
T Consensus 629 ~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t-pv~~l~Ftrr-Nl~L~~g 703 (707)
T KOG0263|consen 629 RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT-PVVGLHFTRR-NLLLAVG 703 (707)
T ss_pred cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCc-eEEEEEEecc-ceeEEec
Confidence 999977 677786 789998643321110000 0011234455654444 8999999875 4555555
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-27 Score=242.45 Aligned_cols=254 Identities=19% Similarity=0.208 Sum_probs=209.8
Q ss_pred cccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCc---ccccccccCCCCeeEEEEeeccccCCCCEEEEEE
Q 001416 113 PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRG---RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1081)
Q Consensus 113 ~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~---~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs 188 (1081)
.++.+| .+.|..++..+.+..++++++.|..++ |++..... ..+..+.+|...|..+.. +++|++.++++
T Consensus 9 ~tl~gh-~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~-----s~dg~~alS~s 82 (315)
T KOG0279|consen 9 GTLEGH-TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL-----SSDGNFALSAS 82 (315)
T ss_pred eeecCC-CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE-----ccCCceEEecc
Confidence 355666 889999999998888999999998885 98875432 245667899999999999 78999999999
Q ss_pred CCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecc--cCCcE
Q 001416 189 SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA--HDGGV 266 (1081)
Q Consensus 189 ~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~--h~~~V 266 (1081)
.|+++++||+.+++..+.|. ||...|++++ +++|.+.++|||.|++|++|++-... ++++.. |.+.|
T Consensus 83 wD~~lrlWDl~~g~~t~~f~-GH~~dVlsva---~s~dn~qivSGSrDkTiklwnt~g~c-------k~t~~~~~~~~WV 151 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFV-GHTKDVLSVA---FSTDNRQIVSGSRDKTIKLWNTLGVC-------KYTIHEDSHREWV 151 (315)
T ss_pred ccceEEEEEecCCcEEEEEE-ecCCceEEEE---ecCCCceeecCCCcceeeeeeecccE-------EEEEecCCCcCcE
Confidence 99999999999999999998 9999999999 69999999999999999999987653 222333 37899
Q ss_pred EEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccC
Q 001416 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHP 343 (1081)
Q Consensus 267 ~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~ 343 (1081)
+|+.|+|. .+.++|+++|.|++|++||+++.+..+.+ .+|+..++.+++||||.++ +|+.|+ .+||++.
T Consensus 152 scvrfsP~-~~~p~Ivs~s~DktvKvWnl~~~~l~~~~------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~- 223 (315)
T KOG0279|consen 152 SCVRFSPN-ESNPIIVSASWDKTVKVWNLRNCQLRTTF------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE- 223 (315)
T ss_pred EEEEEcCC-CCCcEEEEccCCceEEEEccCCcchhhcc------ccccccEEEEEECCCCCEEecCCCCceEEEEEccC-
Confidence 99999993 23799999999999999999998877665 7899999999999999988 567787 4899986
Q ss_pred CcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccC
Q 001416 344 TYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP 410 (1081)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~ 410 (1081)
.+.+.++ .+.. .|.+++|+|+ ...|+.+...+ | +|||......+..+.
T Consensus 224 --------------~k~lysl-~a~~-~v~sl~fspn-rywL~~at~~s-I-kIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 224 --------------GKNLYSL-EAFD-IVNSLCFSPN-RYWLCAATATS-I-KIWDLESKAVVEELK 271 (315)
T ss_pred --------------CceeEec-cCCC-eEeeEEecCC-ceeEeeccCCc-e-EEEeccchhhhhhcc
Confidence 2333444 3455 8999999998 66657666666 3 899988776666654
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-27 Score=261.15 Aligned_cols=241 Identities=17% Similarity=0.249 Sum_probs=206.4
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.+.|.-..-+|++..|-+..+|+++|+.|..|||+++.|++.++.|+.|
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH------------------------------- 96 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH------------------------------- 96 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc-------------------------------
Confidence 4556666778999999999999999999999999999999999999955
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~ 162 (1081)
.+.|++++.+|..+ ++.+++||..+. ||++.. ..+...+++
T Consensus 97 ------------------------------------~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~-wa~~qtfeG 138 (794)
T KOG0276|consen 97 ------------------------------------SDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE-WACEQTFEG 138 (794)
T ss_pred ------------------------------------ccceeeeeecCCCC-eEEecCCccEEEEeeccCc-eeeeeEEcC
Confidence 33467888889887 888999999985 998854 456777899
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|...|.+++|.| .|.+.++++|-|++|++|.+.+..+..+++ ||...|+|++++ ...|..+|+||+.|.+|+||
T Consensus 139 H~HyVMqv~fnP----kD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy-~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 139 HEHYVMQVAFNP----KDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYY-TGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred cceEEEEEEecC----CCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEec-cCCCcceEEecCCCceEEEe
Confidence 999999999987 467789999999999999999999999998 999999999943 55667899999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
|.++.+|++. |+||...|..+.|+| .-++++|||.||+||||+..+-+...++ ...-..+||++-
T Consensus 213 DyQtk~CV~T------LeGHt~Nvs~v~fhp---~lpiiisgsEDGTvriWhs~Ty~lE~tL------n~gleRvW~I~~ 277 (794)
T KOG0276|consen 213 DYQTKSCVQT------LEGHTNNVSFVFFHP---ELPIIISGSEDGTVRIWNSKTYKLEKTL------NYGLERVWCIAA 277 (794)
T ss_pred ecchHHHHHH------hhcccccceEEEecC---CCcEEEEecCCccEEEecCcceehhhhh------hcCCceEEEEee
Confidence 9999987764 799999999999999 9999999999999999998877655443 555678999998
Q ss_pred cCCCCEEEEECC
Q 001416 323 APNLDILTCVKD 334 (1081)
Q Consensus 323 spd~~lls~s~D 334 (1081)
.+....++.|.|
T Consensus 278 ~k~~~~i~vG~D 289 (794)
T KOG0276|consen 278 HKGDGKIAVGFD 289 (794)
T ss_pred cCCCCeEEEecc
Confidence 887665554443
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-26 Score=262.48 Aligned_cols=413 Identities=14% Similarity=0.227 Sum_probs=278.9
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
+..|..|.++|++++|||++++++||+.|-.|+||++.+.+|+.++..|
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH------------------------------- 92 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH------------------------------- 92 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc-------------------------------
Confidence 5678999999999999999999999999999999999998888877732
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~ 162 (1081)
-+.|+.+.|++.-+ ||+++|||..++ ||+++.+ ++....+
T Consensus 93 ------------------------------------lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~--~iavltG 133 (1202)
T KOG0292|consen 93 ------------------------------------LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK--CIAVLTG 133 (1202)
T ss_pred ------------------------------------cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc--eEEEEec
Confidence 33466777888776 999999999996 9999874 6777899
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC--------C--------------------eEEEEEecccccc
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------W--------------------KLVRRYTGGHKGS 214 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~--------~--------------------~~~~~~~~~h~~~ 214 (1081)
|..+|.|..| +|....++++|-|.+||+||+.. + ..++.+..||...
T Consensus 134 HnHYVMcAqF-----hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 134 HNHYVMCAQF-----HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred CceEEEeecc-----CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 9999999999 56788999999999999999842 1 1223334589999
Q ss_pred eEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEE
Q 001416 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1081)
Q Consensus 215 V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWD 294 (1081)
|+-++ |+|.-.+++||+.|+.|++|.++..+.- ..-+..||.+.|.++-|+| ..++++|.|.|++|+|||
T Consensus 209 VNwaA---fhpTlpliVSG~DDRqVKlWrmnetKaW----EvDtcrgH~nnVssvlfhp---~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 209 VNWAA---FHPTLPLIVSGADDRQVKLWRMNETKAW----EVDTCRGHYNNVSSVLFHP---HQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred cceEE---ecCCcceEEecCCcceeeEEEeccccce----eehhhhcccCCcceEEecC---ccceeEecCCCccEEEEe
Confidence 98776 7999999999999999999998765421 2345789999999999999 889999999999999999
Q ss_pred CCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCc--eEEEeccCCc--ccc--------cccc--cccCC--C
Q 001416 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTY--SAL--------TRPL--CELSS--L 358 (1081)
Q Consensus 295 l~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~--~IWdi~~~~~--~~~--------~~~~--~~~~~--~ 358 (1081)
+...+.++++ +.....-|+++-||...+++++.|+ -||.+..... ... .+.+ .++.. .
T Consensus 279 m~kRt~v~tf------rrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 279 MTKRTSVQTF------RRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred cccccceeee------eccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc
Confidence 9999998887 4455688999999999999988885 4666653111 000 0001 11111 1
Q ss_pred CCCeEEccCC--CccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccC-CCCCCCCceEEEEecCcEEEEEEee
Q 001416 359 VPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP-TPSGSRDHSAVYIVERELKLVNFQL 435 (1081)
Q Consensus 359 ~~~~~l~~~~--~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~ 435 (1081)
.++..+...+ ..++.++.++|..+-.+++...++..--+..+.+.+...... ....+....++|+..+..-.++-
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k-- 430 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDK-- 430 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEe--
Confidence 2223333222 347889999998555555544444322344443332222221 11112234466766665433332
Q ss_pred cCCCCCCCCCCcccCCCCCcCCCchhHHhhhhcccccccccCCCCCCeEEEccCCCEEEEecCCCCceEEEEecCeEE--
Q 001416 436 SSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI-- 513 (1081)
Q Consensus 436 ~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~S~~G~~lav~~~~~~~~~i~~~~~~~~-- 513 (1081)
++. +-.+. +...+. .+.+.. + +....+-+.-.|..+.+ ....+.+|.++....
T Consensus 431 ~~~-~v~ik------------~l~N~v------tkkl~~--~-~~~~~IF~ag~g~lll~---~~~~v~lfdvQq~~~~~ 485 (1202)
T KOG0292|consen 431 SNE-QVVIK------------NLKNKV------TKKLLL--P-ESTDDIFYAGTGNLLLR---SPDSVTLFDVQQKKKVG 485 (1202)
T ss_pred cCc-ceEEe------------cccchh------hhcccC--c-ccccceeeccCccEEEE---cCCeEEEEEeecceEEE
Confidence 111 00010 000000 011111 1 11124555556655533 455688899876553
Q ss_pred -eecCceeEEEEecCcccceec
Q 001416 514 -VDSGSARLLAWDTCRDRFAIL 534 (1081)
Q Consensus 514 -~~~G~~~~~aW~~~~~~~a~l 534 (1081)
+......-++|+.+...-|.+
T Consensus 486 si~~s~vkyvvws~dm~~vAll 507 (1202)
T KOG0292|consen 486 SIKVSKVKYVVWSNDMSRVALL 507 (1202)
T ss_pred EEecCceeEEEEcCccchhhhc
Confidence 345568889997665444444
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.5e-26 Score=252.91 Aligned_cols=285 Identities=20% Similarity=0.291 Sum_probs=228.0
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
++.|.+|.++|++++|+|++++|++++.||.|++||+.+++....+..+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------------------------------- 50 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------------------------------- 50 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-------------------------------
Confidence 4568899999999999999999999999999999999876644444311
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccC
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~ 163 (1081)
...+..+.|+|+++.+++++.++.+.+||..+.+ .......|
T Consensus 51 ------------------------------------~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~ 92 (289)
T cd00200 51 ------------------------------------TGPVRDVAASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGH 92 (289)
T ss_pred ------------------------------------CcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc--ceEEEecc
Confidence 2234677788888644444445555579988753 34445677
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
...+.++.| ++++.++++++.||.|++||+.+++....+. .|...+.++. ++|++.++++++.|+.|++||
T Consensus 93 ~~~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 93 TSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVA---FSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred CCcEEEEEE-----cCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEE---EcCcCCEEEEEcCCCcEEEEE
Confidence 789999999 5678888888889999999999888888887 8999999998 478788898888899999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeec
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~s 323 (1081)
+++++... .+..|...+.+++|+| ++..+++++.|+.|++||+++++.+..+ ..|...+.++.|+
T Consensus 164 ~~~~~~~~------~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~ 228 (289)
T cd00200 164 LRTGKCVA------TLTGHTGEVNSVAFSP---DGEKLLSSSSDGTIKLWDLSTGKCLGTL------RGHENGVNSVAFS 228 (289)
T ss_pred ccccccce------eEecCccccceEEECC---CcCEEEEecCCCcEEEEECCCCceecch------hhcCCceEEEEEc
Confidence 98776443 3568888999999999 8889999999999999999988776654 5778899999999
Q ss_pred CCCCEEEEEC-Cc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 324 PNLDILTCVK-DS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 324 pd~~lls~s~-D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
|++.+++++. |+ ++|++.. ..+...+..|.. .|.+++|+|+ +.++++++.||.+ ++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~---------------~~~~~~~~~~~~-~i~~~~~~~~-~~~l~~~~~d~~i-~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRT---------------GECVQTLSGHTN-SVTSLAWSPD-GKRLASGSADGTI-RIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCC---------------ceeEEEccccCC-cEEEEEECCC-CCEEEEecCCCeE-EecC
Confidence 9988775554 76 5788874 223334555666 8999999998 6677999999996 8996
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.7e-27 Score=272.23 Aligned_cols=243 Identities=18% Similarity=0.232 Sum_probs=210.0
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccc-----------------------------ccccccCCCCeeE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD-----------------------------IPKQELDNKSLVC 169 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~-----------------------------~~~~~~~~~~I~~ 169 (1081)
...++|..|++|+. ++|.|..|..+ +|.+...+.+. .....+|.++|..
T Consensus 378 ~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 45689999999998 88888877776 59776322110 1124589999999
Q ss_pred EEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCc
Q 001416 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1081)
Q Consensus 170 ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~ 249 (1081)
+.| +|+.++|+++|.|++||+|.+.++.++..+. ||..+|+.+. |+|.|-+|+|+|.|++-++|.......
T Consensus 457 ~sF-----sPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~---F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 457 CSF-----SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQ---FAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred eee-----cccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEE---ecCCceEEEecCCCceeeeeecccCCc
Confidence 999 7899999999999999999999999999998 9999999998 689999999999999999999988664
Q ss_pred ccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE
Q 001416 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1081)
Q Consensus 250 ~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll 329 (1081)
. ..+.+|-+.|.|+.|+| +..|+++||.|++|++||..+|..++.| .||..+|.+++|||+|++|
T Consensus 528 l------RifaghlsDV~cv~FHP---Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF------~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 528 L------RIFAGHLSDVDCVSFHP---NSNYVATGSSDRTVRLWDVSTGNSVRIF------TGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred h------hhhcccccccceEEECC---cccccccCCCCceEEEEEcCCCcEEEEe------cCCCCceEEEEEcCCCceE
Confidence 4 45789999999999999 9999999999999999999999999887 8999999999999999988
Q ss_pred -EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCC
Q 001416 330 -TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1081)
Q Consensus 330 -s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~ 405 (1081)
+|++|+ .|||+.+ +.++..+.+|.+ -|.++.|+.+ +.++|+|+.|..| ++||......
T Consensus 593 aSg~ed~~I~iWDl~~---------------~~~v~~l~~Ht~-ti~SlsFS~d-g~vLasgg~DnsV-~lWD~~~~~~ 653 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLAN---------------GSLVKQLKGHTG-TIYSLSFSRD-GNVLASGGADNSV-RLWDLTKVIE 653 (707)
T ss_pred eecccCCcEEEEEcCC---------------CcchhhhhcccC-ceeEEEEecC-CCEEEecCCCCeE-EEEEchhhcc
Confidence 577776 5899986 556667888966 9999999998 7778999999996 9999876433
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=252.80 Aligned_cols=278 Identities=20% Similarity=0.321 Sum_probs=230.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceE
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~ 88 (1081)
...+.|.|+.+. ...+++|..|++|+|||..+..+++.+. +|...+.++.-+.+.|++|+
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd~rviisGS----------------- 254 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYDERVIVSGS----------------- 254 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeeccceEEEecC-----------------
Confidence 345789999997 4579999999999999999988888887 67788888888888888875
Q ss_pred EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcc-cccccccCCCC
Q 001416 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-DIPKQELDNKS 166 (1081)
Q Consensus 89 ~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~-~~~~~~~~~~~ 166 (1081)
.|.+|++||++++++ +.+..+| ...|..+.|+. .++++++.|..+ +||+.+.... ....+.+|...
T Consensus 255 ----SDsTvrvWDv~tge~----l~tlihH-ceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 255 ----SDSTVRVWDVNTGEP----LNTLIHH-CEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ----CCceEEEEeccCCch----hhHHhhh-cceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 599999999999996 5566666 77888999964 378888888877 5998875422 23346789999
Q ss_pred eeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 167 I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
|+.+.| +.++++++|.|.+|++|+..++++++++. ||+..|.|+.+ .++++++||.|.+|++||+..
T Consensus 323 VNvVdf-------d~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQY-----r~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 323 VNVVDF-------DDKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred eeeecc-------ccceEEEecCCceEEEEeccceeeehhhh-cccccceehhc-----cCeEEEecCCCceEEEEeccc
Confidence 999999 67799999999999999999999999997 99999999972 688999999999999999999
Q ss_pred CCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEe---cCCCccccCCCCeEEEeec
Q 001416 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI---KPVPKLACHSVASWCHPRA 323 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~---~~~~~~~~h~~~v~~v~~s 323 (1081)
|.+++. ++||+.-|.|+.| +.+.+++|+.||+|+|||+.++...+.. -.+.++..|++.|..+.|.
T Consensus 390 G~cLRv------LeGHEeLvRciRF-----d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 390 GACLRV------LEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred cHHHHH------HhchHHhhhheee-----cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 997764 7999999999999 5589999999999999999876532211 1233457899999999995
Q ss_pred CCCCEEEEECCc--eEEEeccC
Q 001416 324 PNLDILTCVKDS--HIWAIEHP 343 (1081)
Q Consensus 324 pd~~lls~s~D~--~IWdi~~~ 343 (1081)
. -++++++.|. -|||+...
T Consensus 459 ~-fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 459 E-FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred c-eEEEeccCCCeEEEEEcCCC
Confidence 3 4577888775 58998763
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=236.89 Aligned_cols=286 Identities=19% Similarity=0.233 Sum_probs=234.9
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWE-HRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~-t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
+..+.||.+.|..+.|+|+|.++|||+.|..|.+|++. .-+-...++ +|...+.-+ ..++..+.+++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~g--------- 109 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCG--------- 109 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEec---------
Confidence 34578999999999999999999999999999999954 323344444 566666666 78888888875
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
.|.+++.||..++++ .....+| ..-|+++..+.-|..++.++++|+.++ ||.++... ..
T Consensus 110 ------------tDk~v~~wD~~tG~~----~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~ 169 (338)
T KOG0265|consen 110 ------------TDKTVRGWDAETGKR----IRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IK 169 (338)
T ss_pred ------------CCceEEEEeccccee----eehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccch---hh
Confidence 599999999999985 5566777 778888887778888999999999996 99987432 22
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcE
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V 239 (1081)
.....-.++++.| ...+..+.+|+-|+.|++||++.......+. ||...|+.+. .+++|..+.+-+.|.++
T Consensus 170 t~~~kyqltAv~f-----~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~ls---ls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 170 TFENKYQLTAVGF-----KDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLS---LSRYGSFLLSNSMDNTV 240 (338)
T ss_pred ccccceeEEEEEe-----cccccceeeccccCceeeeccccCcceEEee-cccCceeeEE---eccCCCccccccccceE
Confidence 2334567899999 6788899999999999999999999999997 9999999997 69999999999999999
Q ss_pred EEEEcCCCCcccccccceeecccC----CcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHD----GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1081)
Q Consensus 240 ~vWd~~~~~~~~~~~~~~~l~~h~----~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~ 315 (1081)
++||++.-...+. ....+.+|. ......+|+| ++..+-.|+.|+.+.+||..+...+..+ .+|..
T Consensus 241 rvwd~rp~~p~~R--~v~if~g~~hnfeknlL~cswsp---~~~~i~ags~dr~vyvwd~~~r~~lykl------pGh~g 309 (338)
T KOG0265|consen 241 RVWDVRPFAPSQR--CVKIFQGHIHNFEKNLLKCSWSP---NGTKITAGSADRFVYVWDTTSRRILYKL------PGHYG 309 (338)
T ss_pred EEEEecccCCCCc--eEEEeecchhhhhhhcceeeccC---CCCccccccccceEEEeecccccEEEEc------CCcce
Confidence 9999986443332 122344443 3346778999 9999999999999999999888877765 89999
Q ss_pred CeEEEeecCCCCEE-EEECCceEEE
Q 001416 316 ASWCHPRAPNLDIL-TCVKDSHIWA 339 (1081)
Q Consensus 316 ~v~~v~~spd~~ll-s~s~D~~IWd 339 (1081)
.|.++.|+|..++| +++.|.+||-
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999999966 8999988763
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=249.54 Aligned_cols=291 Identities=16% Similarity=0.167 Sum_probs=231.8
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.+.|..|++.|.-+.||++|++|||++.|.+..||++.....
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-------------------------------------- 258 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-------------------------------------- 258 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--------------------------------------
Confidence 456889999999999999999999999999999999753221
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccC
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~ 163 (1081)
+++ ..+..+| ..+|..+.||||.++++++|.++.+.+||..++....... ..+
T Consensus 259 -------------~kl------------~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~ 311 (519)
T KOG0293|consen 259 -------------FKL------------KKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGL 311 (519)
T ss_pred -------------eee------------eeeeecc-cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCc
Confidence 111 2344455 6678999999999977777777777789999987554332 236
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
...+.|++| .|||..+++|+.|++|..||+. |.....++.-....|.+++ ..+||+++++.+.|..|++++
T Consensus 312 ~~S~~sc~W-----~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dla---it~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 312 GFSVSSCAW-----CPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLA---ITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred CCCcceeEE-----ccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEE---EcCCCcEEEEEecccceeeec
Confidence 788999999 5799999999999999999986 4555555533446788888 699999999999999999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC--CeEEEe
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV--ASWCHP 321 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~--~v~~v~ 321 (1081)
..+..... +..-..+|++++.+. +++++++.-.+..+++||++..+.++++ .||.. .+..-+
T Consensus 383 ~e~~~dr~-------lise~~~its~~iS~---d~k~~LvnL~~qei~LWDl~e~~lv~kY------~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 383 REARVDRG-------LISEEQPITSFSISK---DGKLALVNLQDQEIHLWDLEENKLVRKY------FGHKQGHFIIRSC 446 (519)
T ss_pred hhhhhhhc-------cccccCceeEEEEcC---CCcEEEEEcccCeeEEeecchhhHHHHh------hcccccceEEEec
Confidence 88765432 223447899999998 9999999999999999999987777665 56655 333445
Q ss_pred ecCCC-CEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEE
Q 001416 322 RAPNL-DIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1081)
Q Consensus 322 ~spd~-~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~i 397 (1081)
|-... .++ +||+|+ +||+..+ ++++.++.+|.+ .|+|++|+|..+.++|++++||+| +|
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~s---------------gkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtI-RI 509 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRIS---------------GKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTI-RI 509 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccC---------------CceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeE-EE
Confidence 54433 344 788997 5788776 677889999999 999999999999999999999997 99
Q ss_pred eCCC
Q 001416 398 FDPR 401 (1081)
Q Consensus 398 wd~~ 401 (1081)
|.+.
T Consensus 510 Wg~~ 513 (519)
T KOG0293|consen 510 WGPS 513 (519)
T ss_pred ecCC
Confidence 9865
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=4e-26 Score=245.79 Aligned_cols=270 Identities=16% Similarity=0.225 Sum_probs=224.0
Q ss_pred eCCeEEEEEcCCCcccccc-----ccc----cccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccccc
Q 001416 93 YDDDVRFWQLWRNRAAAAE-----APT----AVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~-----~~~----~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~ 162 (1081)
.|-+.|+|++......... ... ........|++++|+.+|. +|++|+.++.++ |+... ..+..+..
T Consensus 199 ~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G---~l~~tl~~ 274 (524)
T KOG0273|consen 199 GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG---NLISTLGQ 274 (524)
T ss_pred CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEeecCcEEEEEecCc---hhhhhhhc
Confidence 5778899998752111100 011 1122246899999999998 899999888886 98764 35666889
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|.++|.++.| +..|.+|++++-|+++.+||..++...+.+. -|..+-..+.|. +...|++++.|+.|+|+
T Consensus 275 HkgPI~slKW-----nk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~----~~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 275 HKGPIFSLKW-----NKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQ----SNDEFATSSTDGCIHVC 344 (524)
T ss_pred cCCceEEEEE-----cCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEe----cCceEeecCCCceEEEE
Confidence 9999999999 7899999999999999999999999999987 788887788885 45689999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
.+.... |..++.+|.+.|+++.|+| .+.+|+|+|+|++++||......+...+ ..|+..|..+.|
T Consensus 345 kv~~~~------P~~t~~GH~g~V~alk~n~---tg~LLaS~SdD~TlkiWs~~~~~~~~~l------~~Hskei~t~~w 409 (524)
T KOG0273|consen 345 KVGEDR------PVKTFIGHHGEVNALKWNP---TGSLLASCSDDGTLKIWSMGQSNSVHDL------QAHSKEIYTIKW 409 (524)
T ss_pred EecCCC------cceeeecccCceEEEEECC---CCceEEEecCCCeeEeeecCCCcchhhh------hhhccceeeEee
Confidence 998776 5566899999999999999 9999999999999999999887776554 899999999999
Q ss_pred cCCCC----------EEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEEC
Q 001416 323 APNLD----------ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1081)
Q Consensus 323 spd~~----------lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~ 390 (1081)
+|+|. +++++.|+ ++||+.. ++|+.+|..|.. +|++++|+|+ +.++|+|+.
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---------------gv~i~~f~kH~~-pVysvafS~~-g~ylAsGs~ 472 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVES---------------GVPIHTLMKHQE-PVYSVAFSPN-GRYLASGSL 472 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccC---------------CceeEeeccCCC-ceEEEEecCC-CcEEEecCC
Confidence 99754 45788886 6899986 678888988888 9999999998 667799999
Q ss_pred CCeEEEEeCCCCCCCCccc
Q 001416 391 VGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 391 dG~Il~iwd~~~~~~~~~~ 409 (1081)
||.| .+|+++....++..
T Consensus 473 dg~V-~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 473 DGCV-HIWSTKTGKLVKSY 490 (524)
T ss_pred CCee-EeccccchheeEee
Confidence 9997 99999887766654
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4e-26 Score=269.50 Aligned_cols=290 Identities=22% Similarity=0.323 Sum_probs=233.6
Q ss_pred eeCCC-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 6 AFRPT-NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 6 ~l~gH-~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
.+.+| ...|.++.|+|+|.++++++.|+.+++|+..+++. .
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~------------------------------------ 194 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--N------------------------------------ 194 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--h------------------------------------
Confidence 44454 88999999999999999999999999999865442 0
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~ 163 (1081)
......+| ...|..++|+|+++ +++++++|+.++ ||+... ...+..+.+|
T Consensus 195 --------------------------~~~~l~~h-~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~-~~~~~~l~gH 245 (456)
T KOG0266|consen 195 --------------------------LLRELSGH-TRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD-GRNLKTLKGH 245 (456)
T ss_pred --------------------------hhcccccc-ccceeeeEECCCCc-EEEEecCCceEEEeeccCC-CeEEEEecCC
Confidence 01111233 66789999999998 888888888885 999332 3567778899
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
...|++++| +|+++++++|+.|++|++||+++++++..+. +|.+.|.+++ +++++++|++++.|+.|++||
T Consensus 246 ~~~v~~~~f-----~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~---f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 246 STYVTSVAF-----SPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLA---FSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred CCceEEEEe-----cCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEE---ECCCCCEEEEcCCCccEEEEE
Confidence 999999999 6789999999999999999999999999998 9999999998 799999999999999999999
Q ss_pred cCCCCcccccccceeecccCCc--EEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCC---eE
Q 001416 244 ADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA---SW 318 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~--V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~---v~ 318 (1081)
+.++... ....+.++... +++++|+| ++.++++++.|+++++||+..++++..+ .+|... +.
T Consensus 317 ~~~~~~~----~~~~~~~~~~~~~~~~~~fsp---~~~~ll~~~~d~~~~~w~l~~~~~~~~~------~~~~~~~~~~~ 383 (456)
T KOG0266|consen 317 LETGSKL----CLKLLSGAENSAPVTSVQFSP---NGKYLLSASLDRTLKLWDLRSGKSVGTY------TGHSNLVRCIF 383 (456)
T ss_pred CCCCcee----eeecccCCCCCCceeEEEECC---CCcEEEEecCCCeEEEEEccCCcceeee------cccCCcceeEe
Confidence 9998732 11124555544 99999999 9999999999999999999999988776 455553 33
Q ss_pred EEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEE--CCCe
Q 001416 319 CHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT--NVGV 393 (1081)
Q Consensus 319 ~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs--~dG~ 393 (1081)
+...++.+.++ +++.|+ .+|++.+ ...+..+.+|....+..+.++|. .+++++++ .|+.
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s---------------~~~~~~l~~h~~~~~~~~~~~~~-~~~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSS---------------GGILQRLEGHSKAAVSDLSSHPT-ENLIASSSFEGDGL 447 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCc---------------cchhhhhcCCCCCceeccccCCC-cCeeeecCcCCCce
Confidence 44557788866 788886 5899885 23334566773448899999997 77888888 7888
Q ss_pred EEEEeCCC
Q 001416 394 IISEFDPR 401 (1081)
Q Consensus 394 Il~iwd~~ 401 (1081)
+ ++|...
T Consensus 448 ~-~~w~~~ 454 (456)
T KOG0266|consen 448 I-RLWKYD 454 (456)
T ss_pred E-EEecCC
Confidence 6 899743
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.2e-27 Score=256.70 Aligned_cols=286 Identities=14% Similarity=0.208 Sum_probs=233.6
Q ss_pred ceeeCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCce
Q 001416 4 LKAFRPTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp-~g~~Lasgs~dg~I~IWd~~t-~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~ 79 (1081)
++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|. +|...++.+ +.++..+.+++
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~s-------- 277 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSAS-------- 277 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeee--------
Confidence 567899999999999999 888999999999999999876 89999998 566666666 77788777765
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCc-EEEEEecCCCccccc
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~-~i~wd~~t~~~~~~~ 158 (1081)
+|+.+++||..+|++ ....+....++++.|+|++++++++|+.++ ++.||+++++ -+.
T Consensus 278 -------------fD~~lKlwDtETG~~------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvq 336 (503)
T KOG0282|consen 278 -------------FDRFLKLWDTETGQV------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQ 336 (503)
T ss_pred -------------cceeeeeeccccceE------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHH
Confidence 699999999999987 334444667899999999955655555555 5559999975 444
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCc
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~ 238 (1081)
....|-..|..+.|. +++.++++.++|++++||+++..-.++.....+.....|+. .+|++++++.=+.|+.
T Consensus 337 eYd~hLg~i~~i~F~-----~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~---~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 337 EYDRHLGAILDITFV-----DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLT---LHPNGKWFAAQSMDNY 408 (503)
T ss_pred HHHhhhhheeeeEEc-----cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCccee---cCCCCCeehhhccCce
Confidence 456788999999994 68999999999999999999987777665545666667776 6899999999999999
Q ss_pred EEEEEcCCCCcccccccceeecccC--CcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCC
Q 001416 239 LILWSADHGQDSRELVPKLSLKAHD--GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1081)
Q Consensus 239 V~vWd~~~~~~~~~~~~~~~l~~h~--~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~ 316 (1081)
|.++.+...-. ......++||. +.-..+.|+| |+.+|++|+.||.+.+||.++.+.+.++ ..|...
T Consensus 409 i~ifs~~~~~r---~nkkK~feGh~vaGys~~v~fSp---DG~~l~SGdsdG~v~~wdwkt~kl~~~l------kah~~~ 476 (503)
T KOG0282|consen 409 IAIFSTVPPFR---LNKKKRFEGHSVAGYSCQVDFSP---DGRTLCSGDSDGKVNFWDWKTTKLVSKL------KAHDQP 476 (503)
T ss_pred EEEEecccccc---cCHhhhhcceeccCceeeEEEcC---CCCeEEeecCCccEEEeechhhhhhhcc------ccCCcc
Confidence 99998754322 12344578886 3456789999 9999999999999999999998877665 889999
Q ss_pred eEEEeecCCCC--EEEEECCc--eEEE
Q 001416 317 SWCHPRAPNLD--ILTCVKDS--HIWA 339 (1081)
Q Consensus 317 v~~v~~spd~~--lls~s~D~--~IWd 339 (1081)
+..+.|||... +++||.|| ++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 99999999765 77899887 5675
No 36
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=7e-26 Score=230.77 Aligned_cols=251 Identities=18% Similarity=0.248 Sum_probs=204.3
Q ss_pred cccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 113 PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 113 ~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
.++.+| ...|.++.|++|.++++.+.-++.+++||.-|.. ++.........|..++| +|.++++|+|+-|+.
T Consensus 49 r~LkGH-~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~haipl~s~WVMtCA~-----sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 49 RTLKGH-LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAY-----SPSGNFVACGGLDNK 120 (343)
T ss_pred EEeccc-ccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ceeEEecCceeEEEEEE-----CCCCCeEEecCcCce
Confidence 567777 8889999999999855444445556679988764 34456777889999999 789999999999999
Q ss_pred EEEEEcCCC------eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcE
Q 001416 193 IRVLSMISW------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1081)
Q Consensus 193 I~lwd~~~~------~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V 266 (1081)
..||++.+. +..+.+. +|.+++.|+. |.+ ...|+|+|.|.++-+||+++++.+. .+.+|.+.|
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~---f~d-D~~ilT~SGD~TCalWDie~g~~~~------~f~GH~gDV 189 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCR---FLD-DNHILTGSGDMTCALWDIETGQQTQ------VFHGHTGDV 189 (343)
T ss_pred eEEEecccccccccceeeeeec-CccceeEEEE---EcC-CCceEecCCCceEEEEEcccceEEE------EecCCcccE
Confidence 999999754 3444555 9999999998 344 4588999999999999999998555 468999999
Q ss_pred EEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccC
Q 001416 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHP 343 (1081)
Q Consensus 267 ~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~ 343 (1081)
.+++++| .+++.++||+-|+.-++||++.+.+.++| .+|..-|+++.|+|+|.-+ +||+|+ |+||++..
T Consensus 190 ~slsl~p--~~~ntFvSg~cD~~aklWD~R~~~c~qtF------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 190 MSLSLSP--SDGNTFVSGGCDKSAKLWDVRSGQCVQTF------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred EEEecCC--CCCCeEEecccccceeeeeccCcceeEee------cccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 9999999 48999999999999999999999999987 8999999999999999955 777776 89999963
Q ss_pred CcccccccccccCCCCCCeEEc-cCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCc
Q 001416 344 TYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1081)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~ 407 (1081)
. .+..+. .....+|++++|+.. ++|+.+|.+|..+ .+||.-+...+.
T Consensus 262 ~---------------~~a~ys~~~~~~gitSv~FS~S-GRlLfagy~d~~c-~vWDtlk~e~vg 309 (343)
T KOG0286|consen 262 Q---------------ELAVYSHDSIICGITSVAFSKS-GRLLFAGYDDFTC-NVWDTLKGERVG 309 (343)
T ss_pred c---------------EEeeeccCcccCCceeEEEccc-ccEEEeeecCCce-eEeeccccceEE
Confidence 1 111222 122448999999998 7888999999996 999966544333
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2e-25 Score=283.05 Aligned_cols=310 Identities=14% Similarity=0.165 Sum_probs=222.1
Q ss_pred eCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCc
Q 001416 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1081)
Q Consensus 7 l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~ 86 (1081)
+.+|.+.|.+++|+|++++||||+.|+.|+|||..+... .-...+ .+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~~-------------------------------~~ 525 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDIH-------------------------------YP 525 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccccc-------------------------------cc
Confidence 556999999999999999999999999999999754110 000000 00
Q ss_pred eEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCC
Q 001416 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1081)
Q Consensus 87 V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~ 165 (1081)
+. ... + ...+.+++|+|.....+++++.|+.+ +||+.+++ .+..+..|.+
T Consensus 526 ~~-------------------------~~~-~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~ 576 (793)
T PLN00181 526 VV-------------------------ELA-S-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEK 576 (793)
T ss_pred eE-------------------------Eec-c-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCC
Confidence 00 000 0 23567888887644577888777777 59998753 4555678999
Q ss_pred CeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcC
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~ 245 (1081)
.|++++|+| +++.+|++|+.||+|++||++++..+..+. . ...|.++.| .++++.+|++|+.||+|++||++
T Consensus 577 ~V~~l~~~p----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~~v~~--~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 577 RVWSIDYSS----ADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-KANICCVQF--PSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CEEEEEEcC----CCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeEEEEE--eCCCCCEEEEEeCCCeEEEEECC
Confidence 999999942 378899999999999999999998888886 3 467899984 47789999999999999999998
Q ss_pred CCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCC
Q 001416 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1081)
Q Consensus 246 ~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd 325 (1081)
+.+. +...+.+|...|.++.|. ++.+|++++.|++|++||+..+.......++..+.+|...+.++.|+|+
T Consensus 649 ~~~~-----~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 649 NPKL-----PLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred CCCc-----cceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 7542 233467899999999996 5679999999999999999753211011122335789999999999999
Q ss_pred CCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 326 LDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 326 ~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
+.+| +++.|+ +||+....... ....+.... ...-.....+.. .|.+++|+|+ +..+++|+.||.| ++||+
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~-~s~~~~~~~-~~~~~~~~~~~~-~V~~v~ws~~-~~~lva~~~dG~I-~i~~~ 792 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPV-LSYKFKTID-PVSGLEVDDASQ-FISSVCWRGQ-SSTLVAANSTGNI-KILEM 792 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCce-EEEecccCC-cccccccCCCCc-EEEEEEEcCC-CCeEEEecCCCcE-EEEec
Confidence 9977 677787 57886542110 000000000 000011222333 7999999998 6667999999997 99984
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=240.16 Aligned_cols=254 Identities=19% Similarity=0.232 Sum_probs=218.8
Q ss_pred ccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECC
Q 001416 112 APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD 190 (1081)
Q Consensus 112 ~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D 190 (1081)
.....+| .++|.++++.|.++ +|++|+.|+.+ +||+.+++++ ..+.+|-..|+.+++ |+..+|+++++.|
T Consensus 144 ~rVi~gH-lgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lk--ltltGhi~~vr~vav-----S~rHpYlFs~ged 214 (460)
T KOG0285|consen 144 YRVISGH-LGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLK--LTLTGHIETVRGVAV-----SKRHPYLFSAGED 214 (460)
T ss_pred hhhhhhc-cceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEE--Eeecchhheeeeeee-----cccCceEEEecCC
Confidence 3455677 89999999999765 99999999998 5999998643 446789999999999 6788999999999
Q ss_pred CeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEE
Q 001416 191 GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1081)
Q Consensus 191 g~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~ 270 (1081)
+.|+.||++..+.++.+. ||-+.|.|++ .+|.-+.|++|+.|.++|+||+++.. +...+.||+.+|.++.
T Consensus 215 k~VKCwDLe~nkvIR~Yh-GHlS~V~~L~---lhPTldvl~t~grDst~RvWDiRtr~------~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYH-GHLSGVYCLD---LHPTLDVLVTGGRDSTIRVWDIRTRA------SVHVLSGHTNPVASVM 284 (460)
T ss_pred CeeEEEechhhhhHHHhc-cccceeEEEe---ccccceeEEecCCcceEEEeeecccc------eEEEecCCCCcceeEE
Confidence 999999999999999987 9999999998 68888999999999999999999987 4556899999999999
Q ss_pred EeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc-eEEEeccCCcccc
Q 001416 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS-HIWAIEHPTYSAL 348 (1081)
Q Consensus 271 fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~-~IWdi~~~~~~~~ 348 (1081)
+.| ..+.++|||.|++|++||+..|+...++ ..|...|.+++.+|....+ ++|.|+ +-|++..
T Consensus 285 ~~~---~dpqvit~S~D~tvrlWDl~agkt~~tl------t~hkksvral~lhP~e~~fASas~dnik~w~~p~------ 349 (460)
T KOG0285|consen 285 CQP---TDPQVITGSHDSTVRLWDLRAGKTMITL------THHKKSVRALCLHPKENLFASASPDNIKQWKLPE------ 349 (460)
T ss_pred eec---CCCceEEecCCceEEEeeeccCceeEee------ecccceeeEEecCCchhhhhccCCccceeccCCc------
Confidence 999 7789999999999999999999988775 7899999999999998866 566664 7898875
Q ss_pred cccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCC
Q 001416 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTP 412 (1081)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~ 412 (1081)
+..+..+.+|.. .|++++...| + .+++|++.|.+ ..||.++....+...+.
T Consensus 350 ---------g~f~~nlsgh~~-iintl~~nsD-~-v~~~G~dng~~-~fwdwksg~nyQ~~~t~ 400 (460)
T KOG0285|consen 350 ---------GEFLQNLSGHNA-IINTLSVNSD-G-VLVSGGDNGSI-MFWDWKSGHNYQRGQTI 400 (460)
T ss_pred ---------cchhhccccccc-eeeeeeeccC-c-eEEEcCCceEE-EEEecCcCccccccccc
Confidence 334445778888 8999998886 4 45899999996 89999998887776443
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=223.62 Aligned_cols=268 Identities=19% Similarity=0.305 Sum_probs=218.9
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCccceEEeccCCCeEEEeecCCCCCceeee
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~--i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l 82 (1081)
++++--...|+.+...|+++.||+++ ...||+||+.+++. +.+|.
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e-------------------------------- 80 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFE-------------------------------- 80 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEe--------------------------------
Confidence 44544556788899999988888775 45889999876542 23332
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccc
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQE 161 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~ 161 (1081)
+| ...|+++.|..+|+ +..+|++|+.++ ||++.. ...+.-
T Consensus 81 ----------------------------------~h-~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~---~~qR~~ 121 (311)
T KOG0315|consen 81 ----------------------------------GH-TKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSL---SCQRNY 121 (311)
T ss_pred ----------------------------------cc-CCceEEEEEeecCe-EEEecCCCceEEEEeccCc---ccchhc
Confidence 22 45678888999997 999999999885 999884 333445
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
.+..+|+++.. +|+...|++|..+|.|++||+....+.+.+.+....+|.++. ..|+|.+++.+...|++.+
T Consensus 122 ~~~spVn~vvl-----hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~---v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 122 QHNSPVNTVVL-----HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT---VMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred cCCCCcceEEe-----cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE---EcCCCcEEEEecCCccEEE
Confidence 56799999999 578889999999999999999988888888767778899998 6999999999999999999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC-ceeeEecCCCccccCCCCeEEE
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~-~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
|++-+.+....+.|...++.|++.+..+.++| ++++|+++|.|.+++||+.++. +.. ..+.+|..++|..
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP---d~k~lat~ssdktv~iwn~~~~~kle------~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSP---DVKYLATCSSDKTVKIWNTDDFFKLE------LVLTGHQRWVWDC 264 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECC---CCcEEEeecCCceEEEEecCCceeeE------EEeecCCceEEee
Confidence 99999888888889999999999999999999 9999999999999999999876 222 2358999999999
Q ss_pred eecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEE
Q 001416 321 PRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1081)
Q Consensus 321 ~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~ 377 (1081)
+||.|+++| ++|.|. ++|++.. .+.+....+|.+ ...|++.
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~---------------~k~v~qy~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSA---------------GKEVRQYQGHHK-AAVCVAL 308 (311)
T ss_pred eeccCccEEEecCCCCceeeccccc---------------CceeeecCCccc-ccEEEEe
Confidence 999999977 788886 7999986 344456677777 5555554
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.7e-26 Score=238.37 Aligned_cols=284 Identities=19% Similarity=0.247 Sum_probs=230.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe-----ccCCCeEEEeecCCCCCceeeec
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV-----GAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v-----s~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.|.+.|.+|... +++|+||++||.++|||. .|+++..+. +|...+..+ ++....+++++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas------------ 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSAS------------ 166 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEec------------
Confidence 578888888887 679999999999999996 588888887 444554432 33334556554
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCC----------
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM---------- 152 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~---------- 152 (1081)
.|.++++|.++.+...........|| ...|.++...++|. .+++|+.|..+ +|+..+.
T Consensus 167 ---------~Dqtl~Lw~~~~~~~~~~~~~~~~GH-k~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 167 ---------MDQTLRLWKWNVGENKVKALKVCRGH-KRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ---------CCceEEEEEecCchhhhhHHhHhccc-ccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccch
Confidence 69999999999988766666666788 88999999999997 67777777766 6982210
Q ss_pred -------------CcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEE
Q 001416 153 -------------RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLM 219 (1081)
Q Consensus 153 -------------~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~ 219 (1081)
....+..+.+|.++|.++.| ++...++++|.|.+|+.||+.+++.+.++. ....++|+.
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w------~d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~ 307 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW------SDATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCIS 307 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEE------cCCCceEeecccceEEEEEeecccceeeee--cCcceeEee
Confidence 01133446789999999999 347789999999999999999999998875 567889998
Q ss_pred EeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc
Q 001416 220 TFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1081)
Q Consensus 220 w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~ 299 (1081)
.+|..++|++||.|..+++||.+++.-. ....++.+|++.|.++.|+| .+..+|++|+.|+++++||+++.+
T Consensus 308 ---~~~~~~Ll~~gssdr~irl~DPR~~~gs---~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 308 ---YSPLSKLLASGSSDRHIRLWDPRTGDGS---VVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ---cccccceeeecCCCCceeecCCCCCCCc---eeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCC
Confidence 6889999999999999999999987532 25667899999999999999 477899999999999999999877
Q ss_pred -eeeEecCCCccccCCCCeEEEeecCCCCEEEEECCceEEEec
Q 001416 300 -ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1081)
Q Consensus 300 -~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~~IWdi~ 341 (1081)
++..+ .+|...|.++.|...+-+++||.|.+|.-.+
T Consensus 380 ~plydI------~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 380 APLYDI------AGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred Ccceee------ccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 66665 8999999999999888888999998654443
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.7e-27 Score=243.08 Aligned_cols=265 Identities=18% Similarity=0.260 Sum_probs=214.6
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCCCeeEEE
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVCME 171 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ia 171 (1081)
.|++|++||.++-.+ ..++.+| .+.|.|+.|. . +++++|+.|..++ ||.++++ .+.....|.+.|..+.
T Consensus 215 rDnTikiWD~n~~~c----~~~L~GH-tGSVLCLqyd--~-rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLEC----LKILTGH-TGSVLCLQYD--E-RVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLR 284 (499)
T ss_pred ccCceEEeccccHHH----HHhhhcC-CCcEEeeecc--c-eEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEE
Confidence 699999999998876 6678888 8889999984 3 4889998888875 9999975 6677888999999999
Q ss_pred EeeccccCCCCEEEEEECCCeEEEEEcCCCe---EEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 001416 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1081)
Q Consensus 172 ~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~---~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~ 248 (1081)
| ++.+++++|.|.+|.+||+.+.. +.+.+. ||...|+.+. | +.++++++|.|.+|++|++.+..
T Consensus 285 f-------~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVd-f----d~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 285 F-------SNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVD-F----DDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred E-------eCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeec-c----ccceEEEecCCceEEEEecccee
Confidence 9 46799999999999999997543 223344 9999999997 2 55699999999999999999998
Q ss_pred cccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCE
Q 001416 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI 328 (1081)
Q Consensus 249 ~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~l 328 (1081)
.++. +.+|..+|-|+.| .++++++||.|.+|++||+..|.+++.+ .+|..-|.|+.|.. .++
T Consensus 352 fvRt------l~gHkRGIAClQY-----r~rlvVSGSSDntIRlwdi~~G~cLRvL------eGHEeLvRciRFd~-krI 413 (499)
T KOG0281|consen 352 FVRT------LNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECGACLRVL------EGHEELVRCIRFDN-KRI 413 (499)
T ss_pred eehh------hhcccccceehhc-----cCeEEEecCCCceEEEEeccccHHHHHH------hchHHhhhheeecC-cee
Confidence 7664 7999999999998 5689999999999999999999998875 89999999999953 458
Q ss_pred EEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCC
Q 001416 329 LTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1081)
Q Consensus 329 ls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~ 406 (1081)
++|+.|| +|||+....-. ....+..++.++..|.+ +|..+.|.. ..|++.+.|.+| -+||....++.
T Consensus 414 VSGaYDGkikvWdl~aaldp------ra~~~~~Cl~~lv~hsg-RVFrLQFD~---fqIvsssHddtI-LiWdFl~~~~~ 482 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDP------RAPASTLCLRTLVEHSG-RVFRLQFDE---FQIISSSHDDTI-LIWDFLNGPPS 482 (499)
T ss_pred eeccccceEEEEecccccCC------cccccchHHHhhhhccc-eeEEEeecc---eEEEeccCCCeE-EEEEcCCCCcc
Confidence 8999998 68999863211 11112233445666777 999999954 457888888887 69998877665
Q ss_pred ccc
Q 001416 407 APL 409 (1081)
Q Consensus 407 ~~~ 409 (1081)
+..
T Consensus 483 ~~~ 485 (499)
T KOG0281|consen 483 AAE 485 (499)
T ss_pred ccc
Confidence 443
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=250.02 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=209.3
Q ss_pred CCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEc
Q 001416 119 VTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1081)
Q Consensus 119 ~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~ 198 (1081)
.+..|..+.|.|+|+++++++..+..-.|+..+...+. ....|+..|+++.| ++++.++++|+.+|.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt--ilQaHDs~Vr~m~w-----s~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET--ILQAHDSPVRTMKW-----SHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHH--HhhhhcccceeEEE-----ccCCCEEEEcCCCceEEeccc
Confidence 36789999999999977777777777789886643332 35789999999999 789999999999999999997
Q ss_pred CCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCC
Q 001416 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1081)
Q Consensus 199 ~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~ 278 (1081)
. ...++.+...|...|.+++ |+|+...|+++|.||+|+|||....+... .+.||.-.|.+++|+| ..
T Consensus 168 n-mnnVk~~~ahh~eaIRdla---fSpnDskF~t~SdDg~ikiWdf~~~kee~------vL~GHgwdVksvdWHP---~k 234 (464)
T KOG0284|consen 168 N-MNNVKIIQAHHAEAIRDLA---FSPNDSKFLTCSDDGTIKIWDFRMPKEER------VLRGHGWDVKSVDWHP---TK 234 (464)
T ss_pred c-hhhhHHhhHhhhhhhheec---cCCCCceeEEecCCCeEEEEeccCCchhh------eeccCCCCcceeccCC---cc
Confidence 6 3455555545669999998 68888999999999999999998876433 4799999999999999 88
Q ss_pred CEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCccccccccccc
Q 001416 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCEL 355 (1081)
Q Consensus 279 ~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~ 355 (1081)
.++++||.|+.|++||.++++|+.++ .+|...|..+.|.|++.+| ++|.|. +++|++.
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tl------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~------------- 295 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATL------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT------------- 295 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhh------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-------------
Confidence 89999999999999999999998765 8999999999999999966 888885 7999984
Q ss_pred CCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 356 SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 356 ~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
.+.+.++.+|.+ .|++++|||-...++.+|+.||.| ..|..-...++..+
T Consensus 296 --mkEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 296 --MKELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSV-VHWVVGLEEPLGEI 345 (464)
T ss_pred --hHHHHHhhcchh-hheeeccccccccceeeccCCCce-EEEeccccccccCC
Confidence 334457788999 999999999989999999999997 78987644444444
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.4e-25 Score=218.18 Aligned_cols=281 Identities=14% Similarity=0.199 Sum_probs=233.9
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
+++.+.+|.+.|..+.|+-+|++.+|++.|.+|++||...|.+++++..+. ..+.-+ +.+...+++++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s~Dnskf~s~G--------- 78 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALSSDNSKFASCG--------- 78 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC-ceeeeccccccccccccCC---------
Confidence 567889999999999999999999999999999999999999999999544 444443 66777777764
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
.|..+.+||+++++. .+.+.+| ...|+.+.|+.+.. ++++|+-|..++ ||-++....+++.
T Consensus 79 ------------gDk~v~vwDV~TGkv----~Rr~rgH-~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 79 ------------GDKAVQVWDVNTGKV----DRRFRGH-LAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ------------CCceEEEEEcccCee----eeecccc-cceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch
Confidence 489999999999984 6677888 88999999999886 899999888886 9999888778877
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcE
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V 239 (1081)
+....+.|.++.. .+..|++||-||++|.||++.|+...... .++|+|+. ++++++..+.++.|+++
T Consensus 141 ldea~D~V~Si~v-------~~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs---~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV-------AEHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVS---FSKDGNCSLASSLDSTL 207 (307)
T ss_pred hhhhcCceeEEEe-------cccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEE---ecCCCCEEEEeecccee
Confidence 8778899999998 46789999999999999999998876654 46899998 69999999999999999
Q ss_pred EEEEcCCCCcccccccceeecccCCcEEE--EEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCC-
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVA--VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA- 316 (1081)
Q Consensus 240 ~vWd~~~~~~~~~~~~~~~l~~h~~~V~~--v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~- 316 (1081)
++.|-.+|+.++. ++||.+.=.. .+++. ....+++||.||.|.+||+.....+..+ ..|...
T Consensus 208 rLlDk~tGklL~s------YkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~wdLvd~~~~sk~------~~~~~v~ 272 (307)
T KOG0316|consen 208 RLLDKETGKLLKS------YKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFWDLVDETQISKL------SVVSTVI 272 (307)
T ss_pred eecccchhHHHHH------hcccccceeeeeeeecc---cceeEEeccCCceEEEEEeccceeeeee------ccCCcee
Confidence 9999999997765 5788764433 34554 6789999999999999999988877665 455554
Q ss_pred eEEEeecCCCC-EEEEECCc-eEEE
Q 001416 317 SWCHPRAPNLD-ILTCVKDS-HIWA 339 (1081)
Q Consensus 317 v~~v~~spd~~-lls~s~D~-~IWd 339 (1081)
+..+.++|... ++++...+ ..|-
T Consensus 273 v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred EEeeecccCccceeEecCCceecee
Confidence 78999999776 55544433 4454
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-26 Score=239.82 Aligned_cols=249 Identities=16% Similarity=0.284 Sum_probs=215.1
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t-~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
.+.|+||++.|..|+|+..|++|++++.|-.+++||.++ .++++... +|...+..+ -|.+.++++++
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~s--------- 212 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCS--------- 212 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecc---------
Confidence 467899999999999999999999999999999999987 45565555 444555555 56678888765
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
.|.+|+.|++.++.+ ...+.+| ..+|..+..+.||. ++++++.+..++ |-..+++ +...
T Consensus 213 ------------rD~tik~We~~tg~c----v~t~~~h-~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~--~k~~ 272 (406)
T KOG0295|consen 213 ------------RDNTIKAWECDTGYC----VKTFPGH-SEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQ--CKAE 272 (406)
T ss_pred ------------cccceeEEeccccee----EEeccCc-hHhEEEEEecCCee-EEEecCCCceEEEEEeccch--hhhh
Confidence 799999999999986 6677888 66999999999996 999999998885 9888864 3445
Q ss_pred cccCCCCeeEEEEeeccccC----------CCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCE
Q 001416 160 QELDNKSLVCMEFLSRSAVG----------DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp----------~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~ 229 (1081)
+..|..+|.|++|-|....| .++++.+++.|++|++||+.++.++.++. ||...|..++ ++|.|++
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~a---f~p~Gky 348 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVA---FSPGGKY 348 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeE---EcCCCeE
Confidence 78899999999998765322 24689999999999999999999999997 9999999998 7999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEEC
Q 001416 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1081)
Q Consensus 230 l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl 295 (1081)
|+|+..|+++++||++++++... +..|+.-|++++|+. +.++++||+-|.++++|..
T Consensus 349 i~ScaDDktlrvwdl~~~~cmk~------~~ah~hfvt~lDfh~---~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCMKT------LEAHEHFVTSLDFHK---TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEecCCcEEEEEeccceeeec------cCCCcceeEEEecCC---CCceEEeccccceeeeeec
Confidence 99999999999999999987664 578999999999998 8899999999999999974
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.3e-25 Score=248.47 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=232.3
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..+.||...|.+++||.+...++|| ..+.++||+..+.++++++...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-------------------------------- 413 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG-------------------------------- 413 (888)
T ss_pred eeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--------------------------------
Confidence 4578999999999999988777776 5668999999999999998821
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCc-EEEEEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~-~i~wd~~t~~~~~~~~~~~~ 163 (1081)
.+.+..|-|.++ .++.|..++ +.+||+.+.. .+....+|
T Consensus 414 -------------------------------------y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~--l~Eti~AH 453 (888)
T KOG0306|consen 414 -------------------------------------YILASKFVPGDR-YIVLGTKNGELQVFDLASAS--LVETIRAH 453 (888)
T ss_pred -------------------------------------cEEEEEecCCCc-eEEEeccCCceEEEEeehhh--hhhhhhcc
Confidence 245566788776 555555554 5579998764 34456799
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC-----CeEEE--EEe----cccccceEEEEEeeeCCCCCEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-----WKLVR--RYT----GGHKGSISCLMTFMASSGEALLVS 232 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~-----~~~~~--~~~----~~h~~~V~~l~w~~~s~d~~~l~s 232 (1081)
.+.|+.++. +||+..+++||.|.+|++||..- +...+ .+. -.-...|.|+. ++||+++|+.
T Consensus 454 dgaIWsi~~-----~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~---~Spdgk~LaV 525 (888)
T KOG0306|consen 454 DGAIWSISL-----SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS---VSPDGKLLAV 525 (888)
T ss_pred ccceeeeee-----cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE---EcCCCcEEEE
Confidence 999999999 78999999999999999999841 21111 110 02457789998 7999999999
Q ss_pred EeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcccc
Q 001416 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 233 gs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
+-.|.+|+||-+++-+ -..++.||.-||.|++.+| |+.+++|||.|++|+||-++-|.|.+.+ -+
T Consensus 526 sLLdnTVkVyflDtlK------FflsLYGHkLPV~smDIS~---DSklivTgSADKnVKiWGLdFGDCHKS~------fA 590 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLK------FFLSLYGHKLPVLSMDISP---DSKLIVTGSADKNVKIWGLDFGDCHKSF------FA 590 (888)
T ss_pred EeccCeEEEEEeccee------eeeeecccccceeEEeccC---CcCeEEeccCCCceEEeccccchhhhhh------hc
Confidence 9999999999998865 4456899999999999999 9999999999999999999999998765 89
Q ss_pred CCCCeEEEeecCCCCE-EEEECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEE
Q 001416 313 HSVASWCHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1081)
Q Consensus 313 h~~~v~~v~~spd~~l-ls~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs 389 (1081)
|.+.|.++.|-|+..+ ++||.|++ -||-.. ...++++.+|.. .|||++.+|+ +.++++++
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---------------Fe~iq~L~~H~~-ev~cLav~~~-G~~vvs~s 653 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---------------FEEIQKLDGHHS-EVWCLAVSPN-GSFVVSSS 653 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhh---------------hhhheeeccchh-eeeeeEEcCC-CCeEEecc
Confidence 9999999999998774 49999985 488775 566778999998 9999999999 55669999
Q ss_pred CCCeEEEEeCCC
Q 001416 390 NVGVIISEFDPR 401 (1081)
Q Consensus 390 ~dG~Il~iwd~~ 401 (1081)
.|..| ++|.-.
T Consensus 654 hD~sI-RlwE~t 664 (888)
T KOG0306|consen 654 HDKSI-RLWERT 664 (888)
T ss_pred CCcee-Eeeecc
Confidence 99996 999843
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.7e-24 Score=242.71 Aligned_cols=278 Identities=17% Similarity=0.230 Sum_probs=219.9
Q ss_pred eCCeEEEEEcCC-Cccc----cccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCe
Q 001416 93 YDDDVRFWQLWR-NRAA----AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL 167 (1081)
Q Consensus 93 ~Dg~IriWdl~~-~~~~----~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I 167 (1081)
.++++.++.+.. .... ........+| ...|.+++++.+.. ++++++.+.+.+|+..+.+ ++.+. ...++
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GH-R~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~k--ciRTi--~~~y~ 415 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGH-RSDVRSLCVSSDSI-LLASGAGESIKIWNRDTLK--CIRTI--TCGYI 415 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccc-hhheeEEEeecCce-eeeecCCCcEEEEEccCcc--eeEEe--ccccE
Confidence 667777777665 1110 1111233455 88999999999875 8889999999999998864 44333 34489
Q ss_pred eEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 001416 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1081)
Q Consensus 168 ~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~ 247 (1081)
.|..| -|.+.++++|...|.+.+||+.+...+.++. +|.+.+++++ ..||+..+++||.|.+|++||..--
T Consensus 416 l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~---~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 416 LASKF-----VPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSIS---LSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred EEEEe-----cCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeee---ecCCCCceEEecCCcEEEEEeEEEE
Confidence 99999 4678999999999999999999998888887 9999999998 7999999999999999999997532
Q ss_pred Cc-----cc--ccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 248 QD-----SR--ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 248 ~~-----~~--~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
.. .+ .+....+++ -+..|.|+.++| |+.+|+.+--|++|+||-+++.+..-. +-||.-+|.|+
T Consensus 487 ~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp---dgk~LaVsLLdnTVkVyflDtlKFfls------LYGHkLPV~sm 556 (888)
T KOG0306|consen 487 VSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP---DGKLLAVSLLDNTVKVYFLDTLKFFLS------LYGHKLPVLSM 556 (888)
T ss_pred eccCcccceeeeeccceEEe-ccccEEEEEEcC---CCcEEEEEeccCeEEEEEecceeeeee------ecccccceeEE
Confidence 11 00 111112222 346799999999 999999999999999999988776544 48999999999
Q ss_pred eecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEE
Q 001416 321 PRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1081)
Q Consensus 321 ~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~i 397 (1081)
..+||+.++ +||.|- +||-++-+ .+-..+..|.+ .|.++.|.|. .+++.+++.||.| +-
T Consensus 557 DIS~DSklivTgSADKnVKiWGLdFG---------------DCHKS~fAHdD-Svm~V~F~P~-~~~FFt~gKD~kv-Kq 618 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLDFG---------------DCHKSFFAHDD-SVMSVQFLPK-THLFFTCGKDGKV-KQ 618 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccccc---------------hhhhhhhcccC-ceeEEEEccc-ceeEEEecCcceE-Ee
Confidence 999999966 888884 79998863 33345667888 9999999996 8889999999997 99
Q ss_pred eCCCCCCCCcccCCCC
Q 001416 398 FDPRSLPAVAPLPTPS 413 (1081)
Q Consensus 398 wd~~~~~~~~~~~~~~ 413 (1081)
||..+...+..++...
T Consensus 619 WDg~kFe~iq~L~~H~ 634 (888)
T KOG0306|consen 619 WDGEKFEEIQKLDGHH 634 (888)
T ss_pred echhhhhhheeeccch
Confidence 9999888888776443
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9.6e-26 Score=231.15 Aligned_cols=294 Identities=16% Similarity=0.229 Sum_probs=238.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceE
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~ 88 (1081)
|...-+-|..|||||++|++|+.||.|.|||+.+|+..+.++-...
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------------------------------- 256 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------------------------------- 256 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh----------------------------------
Confidence 5667789999999999999999999999999999988776652110
Q ss_pred EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccc-cCCCC
Q 001416 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE-LDNKS 166 (1081)
Q Consensus 89 ~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~-~~~~~ 166 (1081)
|+ +-.+ ...|.|+.|+.|.. .+++|+.|+.+ +|.+.++. ++..+. .|...
T Consensus 257 -----d~-------------------fMMm-d~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~--ClRrFdrAHtkG 308 (508)
T KOG0275|consen 257 -----DN-------------------FMMM-DDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQ--CLRRFDRAHTKG 308 (508)
T ss_pred -----cc-------------------eeec-ccceEEEeecccHH-HhhccCcCCcEEEEEEecch--HHHHhhhhhccC
Confidence 00 0011 55788999999987 78888877776 69999974 555554 89999
Q ss_pred eeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 167 I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
|+|+.| +.|+..+++++.|.++++.-+++|++++.+. ||.++|+... |.++|..++++|.||+|++|+..+
T Consensus 309 vt~l~F-----SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~---ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 309 VTCLSF-----SRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEAT---FTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred eeEEEE-----ccCcchhhcccccceEEEeccccchhHHHhc-CccccccceE---EcCCCCeEEEecCCccEEEecCcc
Confidence 999999 7899999999999999999999999999998 9999999997 699999999999999999999999
Q ss_pred CCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCC
Q 001416 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~ 326 (1081)
.+|+..+++ .+.+-+|+++-.-| .+.+.++.+...++|.|-+++ |+.++.+..... ..+...+.+.+|.|
T Consensus 380 teC~~Tfk~----~~~d~~vnsv~~~P--Knpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR---EgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 380 TECLSTFKP----LGTDYPVNSVILLP--KNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR---EGGDFINAILSPKG 449 (508)
T ss_pred hhhhhhccC----CCCcccceeEEEcC--CCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc---cCCceEEEEecCCC
Confidence 998877543 34567899999888 477899999999999999986 677777743222 22334477899999
Q ss_pred CEE-EEECCceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 327 DIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 327 ~ll-s~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
.++ ..++|+.+|-+.... +....++..|.+ .|-.++-||. .+++|+-+.||.. ++|.
T Consensus 450 ewiYcigED~vlYCF~~~s-------------G~LE~tl~VhEk-dvIGl~HHPH-qNllAsYsEDgll-KLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLS-------------GKLERTLPVHEK-DVIGLTHHPH-QNLLASYSEDGLL-KLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeec-------------Cceeeeeecccc-cccccccCcc-cchhhhhcccchh-hhcC
Confidence 988 678898776554321 333456777877 7888999998 8899999999995 9995
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=4.9e-24 Score=223.51 Aligned_cols=287 Identities=16% Similarity=0.194 Sum_probs=230.4
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~ 81 (1081)
+..+.||++.|+|+.|+.+|.+||||+.+|.|+||+..++.....+... ...+..+ .|.+..|+.|+
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-~~dieWl~WHp~a~illAG~---------- 167 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-VEDIEWLKWHPRAHILLAGS---------- 167 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc-cCceEEEEecccccEEEeec----------
Confidence 3467899999999999999999999999999999999999998888632 2333333 88888888875
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~ 160 (1081)
.||.+-.|.+.++. ..+.+.+| ..++++=.|.|+|+++ +++.+++.+ +||+.+++......
T Consensus 168 -----------~DGsvWmw~ip~~~----~~kv~~Gh-~~~ct~G~f~pdGKr~-~tgy~dgti~~Wn~ktg~p~~~~~- 229 (399)
T KOG0296|consen 168 -----------TDGSVWMWQIPSQA----LCKVMSGH-NSPCTCGEFIPDGKRI-LTGYDDGTIIVWNPKTGQPLHKIT- 229 (399)
T ss_pred -----------CCCcEEEEECCCcc----eeeEecCC-CCCcccccccCCCceE-EEEecCceEEEEecCCCceeEEec-
Confidence 58999999998853 35677787 8899999999999955 555555555 69999985332222
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEec-------ccccceEEEEEeeeCCCCCEEEEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-------GHKGSISCLMTFMASSGEALLVSG 233 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~-------~h~~~V~~l~w~~~s~d~~~l~sg 233 (1081)
........|+.+ +..+..++.|+.++.+++-+..+++.+..... .|...+.|+....++..-.+.|+|
T Consensus 230 ~~e~~~~~~~~~-----~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 230 QAEGLELPCISL-----NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred ccccCcCCcccc-----ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 223456788888 67888999999999999999999988877652 566667777633345666789999
Q ss_pred eCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccC
Q 001416 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1081)
Q Consensus 234 s~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h 313 (1081)
+.||+|.|||+...+... .-.|..+|+.+.|-+ ..+|++++.||.|+.||.++|+++.++ .+|
T Consensus 305 ~vdG~i~iyD~a~~~~R~-------~c~he~~V~~l~w~~----t~~l~t~c~~g~v~~wDaRtG~l~~~y------~GH 367 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRH-------ICEHEDGVTKLKWLN----TDYLLTACANGKVRQWDARTGQLKFTY------TGH 367 (399)
T ss_pred cccceEEEEecccchhhe-------eccCCCceEEEEEcC----cchheeeccCceEEeeeccccceEEEE------ecC
Confidence 999999999998765322 245889999999975 479999999999999999999998886 899
Q ss_pred CCCeEEEeecCCCCEE-EEECCc--eEEEec
Q 001416 314 SVASWCHPRAPNLDIL-TCVKDS--HIWAIE 341 (1081)
Q Consensus 314 ~~~v~~v~~spd~~ll-s~s~D~--~IWdi~ 341 (1081)
...|.+++++|+.+++ ++|.|+ +|+.+.
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999965 888887 577653
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=219.74 Aligned_cols=279 Identities=16% Similarity=0.235 Sum_probs=218.3
Q ss_pred cCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeeccc
Q 001416 51 AGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP 128 (1081)
Q Consensus 51 ~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~f 128 (1081)
.+|...+..+ +|+|.++++|+ +|..|.+|++..... ......+| .+.|..+.|
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG---------------------~Dr~I~LWnv~gdce---N~~~lkgH-sgAVM~l~~ 98 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGG---------------------SDRAIVLWNVYGDCE---NFWVLKGH-SGAVMELHG 98 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecC---------------------CcceEEEEecccccc---ceeeeccc-cceeEeeee
Confidence 3666777766 89999999986 699999999766542 23455577 889999999
Q ss_pred CCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001416 129 STKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1081)
Q Consensus 129 sp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~ 207 (1081)
.+|+. .+++++.|+.+ .||.++++ .+.+...|.+.++.+. |. .....++.+|++|+++++||+++...++++
T Consensus 99 ~~d~s-~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~--p~--rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 99 MRDGS-HILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLD--PS--RRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred ccCCC-EEEEecCCceEEEEecccce--eeehhccccceeeecC--cc--ccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 99998 45555555555 59999974 6777889999999887 32 234456889999999999999999998887
Q ss_pred ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC
Q 001416 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1081)
Q Consensus 208 ~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D 287 (1081)
+ .+..++++. +...+..+.+|+-|+.|++||++.+... +++.||.+.|+.+..+| ++.++.+-+-|
T Consensus 172 ~--~kyqltAv~---f~d~s~qv~sggIdn~ikvWd~r~~d~~------~~lsGh~DtIt~lsls~---~gs~llsnsMd 237 (338)
T KOG0265|consen 172 E--NKYQLTAVG---FKDTSDQVISGGIDNDIKVWDLRKNDGL------YTLSGHADTITGLSLSR---YGSFLLSNSMD 237 (338)
T ss_pred c--cceeEEEEE---ecccccceeeccccCceeeeccccCcce------EEeecccCceeeEEecc---CCCcccccccc
Confidence 4 667889998 4788889999999999999999887744 45899999999999999 99999999999
Q ss_pred CeEEEEECCCCc----eeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCC
Q 001416 288 KTLAIWDTVSFK----ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVP 360 (1081)
Q Consensus 288 g~V~iWDl~t~~----~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~ 360 (1081)
.++++||++-.. ++..+... ......+...++|+|++..+ +++.|. .+||... ...
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~--~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~---------------r~~ 300 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGH--IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS---------------RRI 300 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecc--hhhhhhhcceeeccCCCCccccccccceEEEeeccc---------------ccE
Confidence 999999997543 34443210 11112355688999999988 566775 5788764 334
Q ss_pred CeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 361 ~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
+..+++|.. .|++++|||. ..+|.+++.|.+|
T Consensus 301 lyklpGh~g-svn~~~Fhp~-e~iils~~sdk~i 332 (338)
T KOG0265|consen 301 LYKLPGHYG-SVNEVDFHPT-EPIILSCSSDKTI 332 (338)
T ss_pred EEEcCCcce-eEEEeeecCC-CcEEEEeccCcee
Confidence 457788988 9999999998 5566788888885
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=248.28 Aligned_cols=253 Identities=19% Similarity=0.297 Sum_probs=201.6
Q ss_pred cccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeE
Q 001416 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1081)
Q Consensus 115 ~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I 193 (1081)
...+....|.++.|+++|+. +++++.++.+ +|+..+.+.........|...|++++| +|++.++++|+.|++|
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~f-----s~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAF-----SPDGSYLLSGSDDKTL 227 (456)
T ss_pred ecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccceeeeEE-----CCCCcEEEEecCCceE
Confidence 34444678899999999995 6666666665 598855431133334789999999999 7899999999999999
Q ss_pred EEEEc-CCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEe
Q 001416 194 RVLSM-ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1081)
Q Consensus 194 ~lwd~-~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fs 272 (1081)
++||+ ..+.+++++. +|...|++++ |+|+++++++|+.|++|++||++++++.. .+.+|..+|++++|+
T Consensus 228 riwd~~~~~~~~~~l~-gH~~~v~~~~---f~p~g~~i~Sgs~D~tvriWd~~~~~~~~------~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLK-GHSTYVTSVA---FSPDGNLLVSGSDDGTVRIWDVRTGECVR------KLKGHSDGISGLAFS 297 (456)
T ss_pred EEeeccCCCeEEEEec-CCCCceEEEE---ecCCCCEEEEecCCCcEEEEeccCCeEEE------eeeccCCceEEEEEC
Confidence 99999 5568899998 9999999998 68888999999999999999999987544 579999999999999
Q ss_pred eecCCCCEEEEEECCCeEEEEECCCCc--eeeEecCCCccccCCC--CeEEEeecCCCCEE-EEECCc--eEEEeccCCc
Q 001416 273 RVMGGSPQLITIGADKTLAIWDTVSFK--ELRRIKPVPKLACHSV--ASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTY 345 (1081)
Q Consensus 273 p~~~~~~~Lvsgs~Dg~V~iWDl~t~~--~~~~~~~~~~~~~h~~--~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~ 345 (1081)
+ ++.+|++++.|+.|+|||+.++. ++..+ ..+.. .++++.|+|++.++ +++.|+ ++|++..
T Consensus 298 ~---d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~--- 365 (456)
T KOG0266|consen 298 P---DGNLLVSASYDGTIRVWDLETGSKLCLKLL------SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS--- 365 (456)
T ss_pred C---CCCEEEEcCCCccEEEEECCCCceeeeecc------cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---
Confidence 9 99999999999999999999998 44443 34444 58999999999976 666664 7899986
Q ss_pred ccccccccccCCCCCCeEEccCCCc--cEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 346 SALTRPLCELSSLVPPQVLAHHKKL--RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~--~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
...+..+.+|... .+.+...++. +.++.+|+.|+.| .+||+.+...++.+
T Consensus 366 ------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~sg~~d~~v-~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 366 ------------GKSVGTYTGHSNLVRCIFSPTLSTG-GKLIYSGSEDGSV-YVWDSSSGGILQRL 417 (456)
T ss_pred ------------CcceeeecccCCcceeEecccccCC-CCeEEEEeCCceE-EEEeCCccchhhhh
Confidence 3333455566653 3344445565 7788999999997 99998865555444
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-23 Score=221.07 Aligned_cols=261 Identities=16% Similarity=0.225 Sum_probs=206.1
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCC--eEEEEEecCcEEE-EEecCCCc--ccccccccCCCCe
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR--HFLVICCVNKAIF-LDLVTMRG--RDIPKQELDNKSL 167 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~--~~l~s~s~d~~i~-wd~~t~~~--~~~~~~~~~~~~I 167 (1081)
+||++|+||..... .....+| .++|.+++|.-..+ ..|++++.|+.++ |-.+.++. ..+..-.+|...|
T Consensus 123 YDg~~riWd~~Gk~-----~~~~~Gh-t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKS-----IKTIVGH-TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred cCCeeEEEecCCce-----EEEEecC-CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 79999999987653 4566777 88888888754332 3588899888885 76665542 2333445999999
Q ss_pred eEEEEeeccccCCCCEEEEEECCCeEEEEEcC-------------------------CCeEEEEEecccccceEEEEEee
Q 001416 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-------------------------SWKLVRRYTGGHKGSISCLMTFM 222 (1081)
Q Consensus 168 ~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~-------------------------~~~~~~~~~~~h~~~V~~l~w~~ 222 (1081)
-|++. .+++..+++||.|.+|++|+.. ++.++.++. ||..+|.++.|
T Consensus 197 ~sVsv-----~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w-- 268 (423)
T KOG0313|consen 197 DSVSV-----DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVW-- 268 (423)
T ss_pred eEEEe-----cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEE--
Confidence 99999 6899999999999999999931 112344555 99999999996
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceee
Q 001416 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1081)
Q Consensus 223 ~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~ 302 (1081)
++ ...+.++|.|.+|+.||+.++.+..+ +. .....+|++++| ...+|++|+.|+.+++||.+++.---
T Consensus 269 -~d-~~v~yS~SwDHTIk~WDletg~~~~~------~~-~~ksl~~i~~~~---~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 269 -SD-ATVIYSVSWDHTIKVWDLETGGLKST------LT-TNKSLNCISYSP---LSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred -cC-CCceEeecccceEEEEEeecccceee------ee-cCcceeEeeccc---ccceeeecCCCCceeecCCCCCCCce
Confidence 33 66899999999999999999986654 22 346789999999 89999999999999999998764211
Q ss_pred EecCCCccccCCCCeEEEeecCCCC--EEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEe
Q 001416 303 RIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1081)
Q Consensus 303 ~~~~~~~~~~h~~~v~~v~~spd~~--lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~s 378 (1081)
...++.+|.+.|.++.|+|... ++++|.|+ ++||+++. ..|+..+.+|.. +|.++.|.
T Consensus 337 ---v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~D-Kvl~vdW~ 398 (423)
T KOG0313|consen 337 ---VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHND-KVLSVDWN 398 (423)
T ss_pred ---eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCc-eEEEEecc
Confidence 1234689999999999999877 45889997 69999973 346778888988 99999998
Q ss_pred CCCCeEEEEEECCCeEEEEeCC
Q 001416 379 SLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 379 p~~~~llatgs~dG~Il~iwd~ 400 (1081)
. +.+|++|+.|..+ +++..
T Consensus 399 ~--~~~IvSGGaD~~l-~i~~~ 417 (423)
T KOG0313|consen 399 E--GGLIVSGGADNKL-RIFKG 417 (423)
T ss_pred C--CceEEeccCcceE-EEecc
Confidence 6 4578999999996 88753
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=208.19 Aligned_cols=240 Identities=17% Similarity=0.251 Sum_probs=193.9
Q ss_pred ccccccCCCCCeeecccCCC-CCeEEEEEecCcEEE-EEecCCCccccc--ccccCCCCeeEEEEeeccccCCCCEEEEE
Q 001416 112 APTAVSNVTSGFASPPPSTK-GRHFLVICCVNKAIF-LDLVTMRGRDIP--KQELDNKSLVCMEFLSRSAVGDVPLVAFG 187 (1081)
Q Consensus 112 ~~~~~~h~~~~V~sl~fsp~-g~~~l~s~s~d~~i~-wd~~t~~~~~~~--~~~~~~~~I~~ia~~p~~~sp~~~~l~sg 187 (1081)
.....+| .+.+..++|+|- |. +|++|+.|+.++ |+...+...... .-.+|...|++++| +|.|++|++|
T Consensus 7 ~~~~~gh-~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-----sp~g~~La~a 79 (312)
T KOG0645|consen 7 EQKLSGH-KDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-----SPHGRYLASA 79 (312)
T ss_pred EEeecCC-CCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee-----cCCCcEEEEe
Confidence 3455666 668999999998 54 899999998886 988743222111 23578999999999 7899999999
Q ss_pred ECCCeEEEEEcC--CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCc
Q 001416 188 SSDGVIRVLSMI--SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1081)
Q Consensus 188 s~Dg~I~lwd~~--~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~ 265 (1081)
|.|.++.||.-. ..+++..++ ||...|.|++| +++|++||++|.|++|-||.+..+.. +.....|+.|+..
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaw---s~sG~~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqD 152 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLE-GHENEVKCVAW---SASGNYLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQD 152 (312)
T ss_pred eccceEEEeecCCCceeEEeeee-ccccceeEEEE---cCCCCEEEEeeCCCeEEEEEecCCCc---EEEEeeecccccc
Confidence 999999999875 458888987 99999999995 99999999999999999999986553 3345568999999
Q ss_pred EEEEEEeeecCCCCEEEEEECCCeEEEEECC---CCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEECCc--eEEE
Q 001416 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTV---SFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDS--HIWA 339 (1081)
Q Consensus 266 V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~---t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~--~IWd 339 (1081)
|..+.|+| ...+|+|+|.|++|++|+-. ...++++ +.+|...|++++|+|.|. +.+++.|+ +||.
T Consensus 153 VK~V~WHP---t~dlL~S~SYDnTIk~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 153 VKHVIWHP---TEDLLFSCSYDNTIKVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccEEEEcC---CcceeEEeccCCeEEEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999 88999999999999999876 3345555 489999999999999986 56888887 6887
Q ss_pred eccCCcccccccccccCCCCCCeEEc-cCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 340 IEHPTYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 340 i~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
... .+. .|.. .++.++|. + -+||+|+.|+.| +++.
T Consensus 224 ~~~--------------------~~~~~~sr-~~Y~v~W~-~--~~IaS~ggD~~i-~lf~ 259 (312)
T KOG0645|consen 224 LYT--------------------DLSGMHSR-ALYDVPWD-N--GVIASGGGDDAI-RLFK 259 (312)
T ss_pred ecc--------------------Ccchhccc-ceEeeeec-c--cceEeccCCCEE-EEEE
Confidence 553 112 2444 89999998 3 367999999997 6664
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.2e-23 Score=208.02 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=225.8
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
+...++||..+++.|.|+.+|.+|+|++.|.+..||-..+|+.+.++. +|...++++ +.+.+.+.+|+
T Consensus 2 rpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGS--------- 71 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGS--------- 71 (327)
T ss_pred CccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeecc---------
Confidence 345689999999999999999999999999999999999999999999 677888888 77788888876
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCc------EEEEEecCCC-
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK------AIFLDLVTMR- 153 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~------~i~wd~~t~~- 153 (1081)
.|.++++||+.+++... .-....+|..+.|+++|. +++.+.++. +-++|++...
T Consensus 72 ------------AD~t~kLWDv~tGk~la------~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ------------ADQTAKLWDVETGKQLA------TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ------------ccceeEEEEcCCCcEEE------EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChh
Confidence 59999999999998632 222366899999999998 444444432 2257776322
Q ss_pred ----cccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCE
Q 001416 154 ----GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1081)
Q Consensus 154 ----~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~ 229 (1081)
..+..+...+.+.++.+-| +|-+..|++|.+||.|.+||.++++....-...|...|+.++ ++++..+
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~W-----g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q---~s~d~T~ 204 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALW-----GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ---FSRDRTY 204 (327)
T ss_pred hhcccCceEEecCCccceeeeee-----cccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccc---ccCCcce
Confidence 1234445667789999999 788999999999999999999998665555448999999998 7999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCC--eEEEEECCCCceeeEe---
Q 001416 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK--TLAIWDTVSFKELRRI--- 304 (1081)
Q Consensus 230 l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg--~V~iWDl~t~~~~~~~--- 304 (1081)
|+++|.|.+-++||..+-+.++. + ..+.+|++.+++| -.+.++.|+... -|.-=+.+.++.-.++
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kt------y-~te~PvN~aaisP---~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~ 274 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKT------Y-TTERPVNTAAISP---LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL 274 (327)
T ss_pred EEecccCccceeeeccceeeEEE------e-eecccccceeccc---ccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence 99999999999999998775554 2 2457899999999 556666655432 2333333444322222
Q ss_pred ---cCCCccccCCCCeEEEeecCCCC-EEEEECCc--eEEEec
Q 001416 305 ---KPVPKLACHSVASWCHPRAPNLD-ILTCVKDS--HIWAIE 341 (1081)
Q Consensus 305 ---~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~--~IWdi~ 341 (1081)
+......+|-++|++++|||+|+ +.+|++|| ||..+.
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 22345689999999999999999 55888998 555444
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.3e-24 Score=226.20 Aligned_cols=251 Identities=16% Similarity=0.225 Sum_probs=205.6
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEE-e-ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRL-V-GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~-v-s~~~~~lasg~~d~~~~~~~~ 81 (1081)
.+++.||..+|..+.||||.++|++++.|..+++||+.+|.+...+..++...+.+ . .||+..+++|+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs---------- 331 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS---------- 331 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC----------
Confidence 56889999999999999999999999999999999999999999888663333333 3 89999998875
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE 161 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~ 161 (1081)
.|+++..||++.+.. ..-.+.....|.+++.++||+.+++++.+..+..++..+...+. ..
T Consensus 332 -----------~dr~i~~wdlDgn~~-----~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~---li 392 (519)
T KOG0293|consen 332 -----------PDRTIIMWDLDGNIL-----GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG---LI 392 (519)
T ss_pred -----------CCCcEEEecCCcchh-----hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc---cc
Confidence 389999999987652 22223324568999999999988888877777778877642221 33
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
....+|+++.. |.+++++++.-.+..|++||++.++.++.+. ||+..-.-+.-+|--.+..+++|||+|+.|+|
T Consensus 393 se~~~its~~i-----S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 393 SEEQPITSFSI-----SKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred cccCceeEEEE-----cCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 45678999999 7899999999999999999999999998887 88766555543334566689999999999999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCC
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t 297 (1081)
|+..+++.+. .+.||...|+||+|+| .+..+++|+|+||+||||-...
T Consensus 467 Whr~sgkll~------~LsGHs~~vNcVswNP--~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 467 WHRISGKLLA------VLSGHSKTVNCVSWNP--ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEccCCceeE------eecCCcceeeEEecCC--CCHHHhhccCCCCeEEEecCCc
Confidence 9999998554 5899999999999999 4889999999999999998753
No 55
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.2e-21 Score=212.56 Aligned_cols=336 Identities=17% Similarity=0.227 Sum_probs=233.9
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCC
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASD--------HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEH 74 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg--------~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~ 74 (1081)
.+|.+.||++.|.|++.||+.-.+++|-..| .++|||..+-+.+..+... ..++.++ +++.. +
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f-~~GV~~v-------aFsk~-~ 166 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFF-DRGVTCV-------AFSKI-N 166 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccc-cccceee-------eeccc-C
Confidence 3677899999999999999988888876555 5999997776555555422 2233333 22211 1
Q ss_pred CCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCc
Q 001416 75 KGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG 154 (1081)
Q Consensus 75 ~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~ 154 (1081)
.+..+..+..+ .+..+.+||+..+.... ...-....|..+.|+|.+..++++++.+++.+|+...+..
T Consensus 167 ~G~~l~~vD~s-------~~h~lSVWdWqk~~~~~-----~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l 234 (626)
T KOG2106|consen 167 GGSLLCAVDDS-------NPHMLSVWDWQKKAKLG-----PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL 234 (626)
T ss_pred CCceEEEecCC-------CccccchhhchhhhccC-----cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce
Confidence 11122222223 37788999998776321 1111245678899999999999999999999999887643
Q ss_pred ccc-cccc-cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEE
Q 001416 155 RDI-PKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1081)
Q Consensus 155 ~~~-~~~~-~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~s 232 (1081)
... -.++ ...+.|.|++| .++|. +++|.++|.|.||+..+.+..++.. .|.+.|.+++ .-.+|. |+|
T Consensus 235 ~k~~~~fek~ekk~Vl~v~F-----~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~---~lr~Gt-llS 303 (626)
T KOG2106|consen 235 VKRQGIFEKREKKFVLCVTF-----LENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLC---MLRDGT-LLS 303 (626)
T ss_pred EEEeeccccccceEEEEEEE-----cCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEE---EecCcc-Eee
Confidence 211 1122 22378999999 45665 7899999999999998888888877 9999999998 466774 556
Q ss_pred EeCCCcEEEEEcCCCCcc-----------c---------------------ccc--cceeecccCCcEEEEEEeeecCCC
Q 001416 233 GGSDGLLILWSADHGQDS-----------R---------------------ELV--PKLSLKAHDGGVVAVELSRVMGGS 278 (1081)
Q Consensus 233 gs~Dg~V~vWd~~~~~~~-----------~---------------------~~~--~~~~l~~h~~~V~~v~fsp~~~~~ 278 (1081)
|+.|+.|..||-+-.+.. + .+. ......+|......++.+| +.
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp---s~ 380 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP---SK 380 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC---Ch
Confidence 999999999994311100 0 000 0122357888899999999 89
Q ss_pred CEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCceEEEeccCCcccccccccccCCC
Q 001416 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSL 358 (1081)
Q Consensus 279 ~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~~IWdi~~~~~~~~~~~~~~~~~~ 358 (1081)
++++|++.|+.+++|+ ..+.+.+. .-..++.|+.|+|.|.++.++..|+.+-++..+
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~-------~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~-------------- 437 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTK-------IIEDPAECADFHPSGVVAVGTATGRWFVLDTET-------------- 437 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEE-------EecCceeEeeccCcceEEEeeccceEEEEeccc--------------
Confidence 9999999999999999 44444332 224566799999999555677778754444311
Q ss_pred CCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 359 VPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 359 ~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
..+.++... .++++++.|+|+ +.++|.|+.|+.| ++|-
T Consensus 438 ~~lv~~~~d-~~~ls~v~ysp~-G~~lAvgs~d~~i-yiy~ 475 (626)
T KOG2106|consen 438 QDLVTIHTD-NEQLSVVRYSPD-GAFLAVGSHDNHI-YIYR 475 (626)
T ss_pred ceeEEEEec-CCceEEEEEcCC-CCEEEEecCCCeE-EEEE
Confidence 111233334 459999999999 6677999999997 6664
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.5e-23 Score=205.82 Aligned_cols=242 Identities=21% Similarity=0.298 Sum_probs=196.1
Q ss_pred CeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC
Q 001416 122 GFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1081)
Q Consensus 122 ~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~ 200 (1081)
.+..++|+++....+++++.|+.+ +||. ++...++..++.|...|.++.|.+ .++..++++|.|++|++||..-
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~-~~~s~Pi~~~kEH~~EV~Svdwn~----~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDL-TMPSKPIHKFKEHKREVYSVDWNT----VRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEecc-CCCCcchhHHHhhhhheEEecccc----ccceeEEeeccCCceEeecCCC
Confidence 356778888766666666655555 6994 344467888899999999999964 4567789999999999999998
Q ss_pred CeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCE
Q 001416 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1081)
Q Consensus 201 ~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~ 280 (1081)
.+.+.++. ||..-|....| .+..+++|+++|.|+++++||++... ....+..|...+.|+.|+. -+...
T Consensus 137 ~~Sv~Tf~-gh~~~Iy~a~~--sp~~~nlfas~Sgd~~l~lwdvr~~g------k~~~i~ah~~Eil~cdw~k--y~~~v 205 (311)
T KOG0277|consen 137 PNSVQTFN-GHNSCIYQAAF--SPHIPNLFASASGDGTLRLWDVRSPG------KFMSIEAHNSEILCCDWSK--YNHNV 205 (311)
T ss_pred CcceEeec-CCccEEEEEec--CCCCCCeEEEccCCceEEEEEecCCC------ceeEEEeccceeEeecccc--cCCcE
Confidence 99999998 99999999995 57788999999999999999998754 2334789999999999998 48889
Q ss_pred EEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EE-EEECCc--eEEEeccCCcccccccccccC
Q 001416 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDS--HIWAIEHPTYSALTRPLCELS 356 (1081)
Q Consensus 281 Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~ 356 (1081)
++||+.|+.|++||+++-+ .|+..+.+|.-.|..+.|||... +| +++.|- ||||...+.
T Consensus 206 l~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------ 268 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------ 268 (311)
T ss_pred EEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch------------
Confidence 9999999999999998754 24455689999999999999766 44 788884 899987532
Q ss_pred CCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 357 ~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
..+.+...|.. -|..+.|++..+..+|..+-|+.+ ++|++
T Consensus 269 --s~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l-~Vw~p 308 (311)
T KOG0277|consen 269 --SAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELL-YVWNP 308 (311)
T ss_pred --hhhhhhhccce-EEeccccccccCceeeecccccce-eeecc
Confidence 12223333444 889999999888999999999996 99984
No 57
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.1e-22 Score=194.27 Aligned_cols=310 Identities=16% Similarity=0.179 Sum_probs=228.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceE
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~ 88 (1081)
.-+..|.+++|||.|.+.+.|+...+.+|--+..-...+. .|... ....
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~---~hea~----------------------------~~pp 78 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH---AHEAA----------------------------KQPP 78 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCccc---ccccc----------------------------cCCC
Confidence 3457899999999999999999999999987653111111 11000 0000
Q ss_pred EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE---EEecCCCcc-cccccccCC
Q 001416 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF---LDLVTMRGR-DIPKQELDN 164 (1081)
Q Consensus 89 ~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~---wd~~t~~~~-~~~~~~~~~ 164 (1081)
+| ......|+.+.|.|.+|+|+|+ ++++|++|+.+. |+..+.+.. .-..+..|.
T Consensus 79 ~v---------------------~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhd 136 (350)
T KOG0641|consen 79 SV---------------------LCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD 136 (350)
T ss_pred eE---------------------EeeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecC
Confidence 00 1123345688999999999998 999999999884 444443211 223467899
Q ss_pred CCeeEEEEeeccccCCCCEEEEEE-CCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs-~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
+.|+.++|.... +..+..+++++ .|..|.+-|-..++..+.+. ||++-|.++- +-++-+|++||.|.+||+||
T Consensus 137 gtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilaly----swn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 137 GTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILALY----SWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred CceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEEE----EecCcEEEccCCCceEEEEe
Confidence 999999997532 23355666654 57788888999999999987 9999999884 66788999999999999999
Q ss_pred cCCCCcccccccceeecc-cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 244 ADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
++-..++..+...+.-.+ ..+.|.+++..| .+++|++|-.|....+||++.++.++++ ..|+..|.|+.|
T Consensus 211 lrv~~~v~~l~~~~~~~glessavaav~vdp---sgrll~sg~~dssc~lydirg~r~iq~f------~phsadir~vrf 281 (350)
T KOG0641|consen 211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDP---SGRLLASGHADSSCMLYDIRGGRMIQRF------HPHSADIRCVRF 281 (350)
T ss_pred eeccceeeeccCcccCCCcccceeEEEEECC---CcceeeeccCCCceEEEEeeCCceeeee------CCCccceeEEEe
Confidence 998776654321111111 125789999999 9999999999999999999999999987 679999999999
Q ss_pred cCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 323 APNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 323 spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
+|...++ +||.|. ++-|+.- ++....++.....|+. .+..+.|||+ ..-+++.+.|.++ .+|-
T Consensus 282 sp~a~yllt~syd~~ikltdlqg-----------dla~el~~~vv~ehkd-k~i~~rwh~~-d~sfisssadkt~-tlwa 347 (350)
T KOG0641|consen 282 SPGAHYLLTCSYDMKIKLTDLQG-----------DLAHELPIMVVAEHKD-KAIQCRWHPQ-DFSFISSSADKTA-TLWA 347 (350)
T ss_pred CCCceEEEEecccceEEEeeccc-----------chhhcCceEEEEeccC-ceEEEEecCc-cceeeeccCcceE-EEec
Confidence 9998855 899996 4566653 2222445556667777 7777899998 7777889999996 7996
Q ss_pred C
Q 001416 400 P 400 (1081)
Q Consensus 400 ~ 400 (1081)
+
T Consensus 348 ~ 348 (350)
T KOG0641|consen 348 L 348 (350)
T ss_pred c
Confidence 4
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=1.8e-23 Score=226.63 Aligned_cols=249 Identities=18% Similarity=0.250 Sum_probs=203.8
Q ss_pred cccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCC
Q 001416 113 PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1081)
Q Consensus 113 ~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg 191 (1081)
....+| ...|+++.|.|..-+++++++.|+.+ +|++.. ...++.++.+|..+|..++| +.+|..+++++.|+
T Consensus 208 ~~~~gH-~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~-----s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 208 HNLSGH-TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASF-----NNCGTSFLSASFDR 280 (503)
T ss_pred eeccCC-ccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhc-----cccCCeeeeeecce
Confidence 445677 78899999999555688888888877 599887 34688889999999999999 78999999999999
Q ss_pred eEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCC-CEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEE
Q 001416 192 VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1081)
Q Consensus 192 ~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~-~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~ 270 (1081)
.|++||.++|+++..+. ....++|+. +.|++ +.|++|+.|+.|+.||+++++.+++ +..|-+.|..+.
T Consensus 281 ~lKlwDtETG~~~~~f~--~~~~~~cvk---f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------Yd~hLg~i~~i~ 349 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH--LDKVPTCVK---FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------YDRHLGAILDIT 349 (503)
T ss_pred eeeeeccccceEEEEEe--cCCCceeee---cCCCCCcEEEEecCCCcEEEEeccchHHHHH------HHhhhhheeeeE
Confidence 99999999999999985 455678887 57776 8999999999999999999997765 577889999999
Q ss_pred EeeecCCCCEEEEEECCCeEEEEECCCCceeeEecC----------------------------------------CCcc
Q 001416 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP----------------------------------------VPKL 310 (1081)
Q Consensus 271 fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~----------------------------------------~~~~ 310 (1081)
|-+ ++.+++++++|++++||+.+..-.++.+.. ....
T Consensus 350 F~~---~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 350 FVD---EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred Ecc---CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh
Confidence 999 999999999999999999875443322110 0133
Q ss_pred ccCCC--CeEEEeecCCCCEE-EEECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEE
Q 001416 311 ACHSV--ASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLV 385 (1081)
Q Consensus 311 ~~h~~--~v~~v~~spd~~ll-s~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~ll 385 (1081)
.+|.. -...+.|||||.+| +|..||+ +||.++ .+.+..+..|.. ++..+.|||....-+
T Consensus 427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---------------~kl~~~lkah~~-~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---------------TKLVSKLKAHDQ-PCIGVDWHPVEPSKV 490 (503)
T ss_pred cceeccCceeeEEEcCCCCeEEeecCCccEEEeechh---------------hhhhhccccCCc-ceEEEEecCCCccee
Confidence 45543 34478999999977 7778886 688875 333446777866 999999999988899
Q ss_pred EEEECCCeEEEEeC
Q 001416 386 ATGTNVGVIISEFD 399 (1081)
Q Consensus 386 atgs~dG~Il~iwd 399 (1081)
|+++.||.| ++||
T Consensus 491 at~~w~G~I-kiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLI-KIWD 503 (503)
T ss_pred EecccCcee-EecC
Confidence 999999997 9997
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=1e-21 Score=249.28 Aligned_cols=274 Identities=19% Similarity=0.245 Sum_probs=204.5
Q ss_pred EeCCeEEEEEcCCCccccccc-cccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCC--ccc--cc-ccccCC
Q 001416 92 FYDDDVRFWQLWRNRAAAAEA-PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR--GRD--IP-KQELDN 164 (1081)
Q Consensus 92 f~Dg~IriWdl~~~~~~~~~~-~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~--~~~--~~-~~~~~~ 164 (1081)
|.+|-+++|+..+.+...... .....| ...|.+++|+|+|+ ++++|+.|+.+ +||..+.. ... .. ....+.
T Consensus 455 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~ 532 (793)
T PLN00181 455 FLEGLCKYLSFSKLRVKADLKQGDLLNS-SNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR 532 (793)
T ss_pred hhhhhhhhhcccceEEEEeeccccccCC-CCcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEeccc
Confidence 346778888877654321111 112234 78899999999998 66666666655 69975421 000 00 112234
Q ss_pred CCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
..+.+++|+| +++.+|++++.||+|++||+.+++.+..+. +|...|++++| .++++.+|++|+.|++|++||+
T Consensus 533 ~~v~~l~~~~----~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 533 SKLSGICWNS----YIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDY--SSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred CceeeEEecc----CCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEE--cCCCCCEEEEEcCCCEEEEEEC
Confidence 6789999953 457899999999999999999999998887 99999999994 3458899999999999999999
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc-eeeEecCCCccccCCCCeEEEeec
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRA 323 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~-~~~~~~~~~~~~~h~~~v~~v~~s 323 (1081)
+++..+.. +..| ..|.++.|++ +++.+|++|+.|+.|++||+++.+ .+.. +.+|...|.++.|.
T Consensus 606 ~~~~~~~~------~~~~-~~v~~v~~~~--~~g~~latgs~dg~I~iwD~~~~~~~~~~------~~~h~~~V~~v~f~ 670 (793)
T PLN00181 606 NQGVSIGT------IKTK-ANICCVQFPS--ESGRSLAFGSADHKVYYYDLRNPKLPLCT------MIGHSKTVSYVRFV 670 (793)
T ss_pred CCCcEEEE------EecC-CCeEEEEEeC--CCCCEEEEEeCCCeEEEEECCCCCccceE------ecCCCCCEEEEEEe
Confidence 98765433 3433 5799999976 478999999999999999998765 3333 36899999999998
Q ss_pred CCCCEEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 324 PNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 324 pd~~lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
+...+++++.|+ +|||+..... .....++..+.+|.. .+++++|+|+ +.+|++|+.||.| ++|+..
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~---------~~~~~~l~~~~gh~~-~i~~v~~s~~-~~~lasgs~D~~v-~iw~~~ 738 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSIS---------GINETPLHSFMGHTN-VKNFVGLSVS-DGYIATGSETNEV-FVYHKA 738 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCcc---------ccCCcceEEEcCCCC-CeeEEEEcCC-CCEEEEEeCCCEE-EEEECC
Confidence 555567889987 6899874210 001344567778877 8999999998 5678999999996 999955
No 60
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=207.20 Aligned_cols=299 Identities=16% Similarity=0.195 Sum_probs=202.3
Q ss_pred ccceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceee
Q 001416 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~ 81 (1081)
|.+..|+||.+.|++++|+.||+.|+|++.|++|+||++...+. +.|. +
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr-----~---------------------- 125 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR-----C---------------------- 125 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-----H----------------------
Confidence 45667999999999999999999999999999999999875211 1000 0
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCC---Ccc--
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM---RGR-- 155 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~---~~~-- 155 (1081)
+| .....+| -+.+.|+||-+.+++++..+..+ +|-.... ...
T Consensus 126 ---------------~R-------------~nve~dh----pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~ 173 (420)
T KOG2096|consen 126 ---------------IR-------------QNVEYDH----PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHH 173 (420)
T ss_pred ---------------hh-------------ccccCCC----ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcc
Confidence 00 0011112 36788999998888877766665 4643221 110
Q ss_pred --cc---cccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEE
Q 001416 156 --DI---PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALL 230 (1081)
Q Consensus 156 --~~---~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l 230 (1081)
.. ...+.|...+..+-. ..++.+|++++.|..|.+|+++ |+.+..+. ..+..-+..+ .+|+|+++
T Consensus 174 ~v~~D~~~f~~kh~v~~i~iGi-----A~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aa---vSP~GRFi 243 (420)
T KOG2096|consen 174 FVHIDNLEFERKHQVDIINIGI-----AGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAA---VSPDGRFI 243 (420)
T ss_pred cccccccccchhcccceEEEee-----cCCceEEEEecCCCcEEEEecC-Cceeeeec-ccccccccee---eCCCCcEE
Confidence 00 011223345555555 4678899999999999999999 88888775 3333333333 59999999
Q ss_pred EEEeCCCcEEEEEcCCCC--cccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCC----CceeeEe
Q 001416 231 VSGGSDGLLILWSADHGQ--DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS----FKELRRI 304 (1081)
Q Consensus 231 ~sgs~Dg~V~vWd~~~~~--~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t----~~~~~~~ 304 (1081)
++++-.-.|++|.+--++ ..++....+.|+||.+.|.+++|++ +...++|.|.||+++|||++- ++--+.+
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC---CcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 999999999999974332 3455556788999999999999999 999999999999999999852 1211122
Q ss_pred cCC-CccccCCCCeEEEeecCCCCEEEEE--CCceEEEeccCCcccccccccccCCCCCCeEEc-cCCCccEEEEEEeCC
Q 001416 305 KPV-PKLACHSVASWCHPRAPNLDILTCV--KDSHIWAIEHPTYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSL 380 (1081)
Q Consensus 305 ~~~-~~~~~h~~~v~~v~~spd~~lls~s--~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~V~~l~~sp~ 380 (1081)
+.. ..+..-......+..+|+|+.++.+ .|.+++..+.+.- ...+. .|.. .|.|++|+++
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~---------------~~~~e~~h~~-~Is~is~~~~ 384 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD---------------YPELEDIHST-TISSISYSSD 384 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc---------------chhHHHhhcC-ceeeEEecCC
Confidence 111 1122223344489999999988654 4557777664211 11222 3444 8999999999
Q ss_pred CCeEEEEEECCCe
Q 001416 381 QPHLVATGTNVGV 393 (1081)
Q Consensus 381 ~~~llatgs~dG~ 393 (1081)
+..++++++.-.
T Consensus 385 -g~~~atcGdr~v 396 (420)
T KOG2096|consen 385 -GKYIATCGDRYV 396 (420)
T ss_pred -CcEEeeecceee
Confidence 555566655443
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=4.5e-23 Score=205.56 Aligned_cols=281 Identities=12% Similarity=0.138 Sum_probs=225.6
Q ss_pred eeCCCCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 6 AFRPTNDKIVKIQLHP---THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp---~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
+-.||+.+|..++||| +|-+|++++.||.-.+-+-+||..+.+|. +|...++.. +.+...-|+++
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaa--------- 78 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAA--------- 78 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhc---------
Confidence 4569999999999996 67799999999999999999999999999 455555554 33333334432
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
.|-+.++||.-++.. +..+ .| ...|.+++|+.|.+ .+++|+.+++++ ||++..+ .+...
T Consensus 79 ------------adftakvw~a~tgde----lhsf-~h-khivk~~af~~ds~-~lltgg~ekllrvfdln~p~-App~E 138 (334)
T KOG0278|consen 79 ------------ADFTAKVWDAVTGDE----LHSF-EH-KHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPK-APPKE 138 (334)
T ss_pred ------------ccchhhhhhhhhhhh----hhhh-hh-hheeeeEEecccch-hhhccchHHHhhhhhccCCC-CCchh
Confidence 477889999888763 2222 22 56789999999987 778888888885 8998765 34455
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcE
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V 239 (1081)
...|...|+.+-|+ ...+.|+++++|++||+||.+++..++++. .+.+|+++. .+++|+++.+ ..-+.|
T Consensus 139 ~~ghtg~Ir~v~wc-----~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlE---vs~dG~ilTi-a~gssV 207 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWC-----HEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLE---VSQDGRILTI-AYGSSV 207 (334)
T ss_pred hcCCCCcceeEEEe-----ccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCccee---eccCCCEEEE-ecCcee
Confidence 78899999999995 566778888999999999999999999986 778999998 6899977665 557789
Q ss_pred EEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEE
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 240 ~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
++||..+-..++.. + ..-.|.+...+| +...++.|+.|..++.||+.++..+..+ ..+|.++|.|
T Consensus 208 ~Fwdaksf~~lKs~------k-~P~nV~SASL~P---~k~~fVaGged~~~~kfDy~TgeEi~~~-----nkgh~gpVhc 272 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSY------K-MPCNVESASLHP---KKEFFVAGGEDFKVYKFDYNTGEEIGSY-----NKGHFGPVHC 272 (334)
T ss_pred EEeccccccceeec------c-CccccccccccC---CCceEEecCcceEEEEEeccCCceeeec-----ccCCCCceEE
Confidence 99999886655432 1 224588899999 8899999999999999999999987663 4789999999
Q ss_pred EeecCCCCEE-EEECCc--eEEEecc
Q 001416 320 HPRAPNLDIL-TCVKDS--HIWAIEH 342 (1081)
Q Consensus 320 v~~spd~~ll-s~s~D~--~IWdi~~ 342 (1081)
+.|+|+|.+. +||+|| |||....
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecC
Confidence 9999999965 788997 6898764
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=1e-22 Score=221.28 Aligned_cols=304 Identities=17% Similarity=0.246 Sum_probs=212.3
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..|++|+..|.++++.|.|-.++||+.|-.|++||+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd---------------------------------------- 200 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD---------------------------------------- 200 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEeccccc----------------------------------------
Confidence 4688999999999999999999999999999999986321
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCc----------
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG---------- 154 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~---------- 154 (1081)
.+.+-+. .+.-.. ...|.++.|++.|..+|+..+.....++|-...+.
T Consensus 201 ----------as~~~fr---------~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 201 ----------ASMRSFR---------QLQPCE---THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred ----------ccchhhh---------ccCccc---ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 0000000 000111 34678899999999888888888777787543221
Q ss_pred ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEe----cccccceEEEEEeeeCCCCCE
Q 001416 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYT----GGHKGSISCLMTFMASSGEAL 229 (1081)
Q Consensus 155 ~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~----~~h~~~V~~l~w~~~s~d~~~ 229 (1081)
..+....+|-..++|.+|||. +...+++++.||++|+||+... +....+. .+..-+++.++ +++++++
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~---~nrdg~~ 331 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA---WNRDGKL 331 (641)
T ss_pred hhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee---cCCCcch
Confidence 123345688899999999763 4557999999999999999753 2333332 24455677787 4999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcccccccceeecccCC--cEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC-ceeeEecC
Q 001416 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKP 306 (1081)
Q Consensus 230 l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~--~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~-~~~~~~~~ 306 (1081)
||+|+.||.|.+|+..+..... ....-.+|.. .|+||.|++ +|++|+|-|.|+++++||++.. +++.....
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p---~~~vk~AH~~g~~Itsi~FS~---dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRP---VMKVKDAHLPGQDITSISFSY---DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred hhhcccCCceeeeecCCccccc---ceEeeeccCCCCceeEEEecc---ccchhhhccCCCceeeeeccccccchhhhcC
Confidence 9999999999999985543211 1122357877 899999999 9999999999999999999864 44444322
Q ss_pred CCccccCCCCeEEEeecCCCCEE-EEECC------ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeC
Q 001416 307 VPKLACHSVASWCHPRAPNLDIL-TCVKD------SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1081)
Q Consensus 307 ~~~~~~h~~~v~~v~~spd~~ll-s~s~D------~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp 379 (1081)
+.+. ..-+.++|||+.++| +|+.- +.++-+...+ ...+..+..... .|..+.|||
T Consensus 406 L~t~----~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t-------------~d~v~ki~i~~a-Svv~~~Whp 467 (641)
T KOG0772|consen 406 LPTP----FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT-------------LDTVYKIDISTA-SVVRCLWHP 467 (641)
T ss_pred CCcc----CCCCccccCCCceEEEecccccCCCCCceEEEEeccc-------------eeeEEEecCCCc-eEEEEeecc
Confidence 2221 133468999999977 44321 2443333211 222234433344 788899999
Q ss_pred CCCeEEEEEECCCeEEEEeCCCC
Q 001416 380 LQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 380 ~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
. -+.|.+|+.||.+-..||...
T Consensus 468 k-LNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 468 K-LNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred h-hhheeeecCCCceEEEECccc
Confidence 7 667789999999866778654
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=236.09 Aligned_cols=275 Identities=20% Similarity=0.318 Sum_probs=228.0
Q ss_pred eeCC-CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeee
Q 001416 6 AFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 6 ~l~g-H~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l 82 (1081)
.+.+ |...+.+..|+ ..++++++.|++|++||..++..+..--.+|...++.+ ...+..|.+|+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS----------- 268 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS----------- 268 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-----------
Confidence 3444 56778999999 56899999999999999999999988444788888887 22477788775
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccc
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~ 161 (1081)
.|.++++||..+++| ...+.+| .+.|.++...+ ..+++|+.|..+ +|++.++. .+..+.
T Consensus 269 ----------~D~t~rvWd~~sg~C----~~~l~gh-~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~--~l~l~~ 328 (537)
T KOG0274|consen 269 ----------TDKTERVWDCSTGEC----THSLQGH-TSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA--CLNLLR 328 (537)
T ss_pred ----------cCCcEEeEecCCCcE----EEEecCC-CceEEEEEccC---ceEeeccCCceEEEEeccCcc--eEEEec
Confidence 599999999999997 5667777 77788887743 467777877777 59999864 555566
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
+|..+|+|+.. ++.++++|+.|++|++||..++++++.+. ||.+.|.++. +... ..+++|+.|++|++
T Consensus 329 ~h~~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~---~~~~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 329 GHTGPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLI---VDSE-NRLLSGSLDTTIKV 396 (537)
T ss_pred cccccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEE---ecCc-ceEEeeeeccceEe
Confidence 79999999999 48899999999999999999999999998 8999999996 3443 89999999999999
Q ss_pred EEcCCC-CcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcccc-CCCCeEE
Q 001416 242 WSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC-HSVASWC 319 (1081)
Q Consensus 242 Wd~~~~-~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~-h~~~v~~ 319 (1081)
||+++. +++ .++.+|..-|.++.+ .+++|++++.|++|++||..++++++++ .+ |...|++
T Consensus 397 Wdl~~~~~c~------~tl~~h~~~v~~l~~-----~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~------~~~~~~~v~~ 459 (537)
T KOG0274|consen 397 WDLRTKRKCI------HTLQGHTSLVSSLLL-----RDNFLVSSSADGTIKLWDAEEGECLRTL------EGRHVGGVSA 459 (537)
T ss_pred ecCCchhhhh------hhhcCCccccccccc-----ccceeEeccccccEEEeecccCceeeee------ccCCcccEEE
Confidence 999998 544 457999998887776 5589999999999999999999999887 33 6778888
Q ss_pred EeecCCCCEEEEECCc--eEEEeccC
Q 001416 320 HPRAPNLDILTCVKDS--HIWAIEHP 343 (1081)
Q Consensus 320 v~~spd~~lls~s~D~--~IWdi~~~ 343 (1081)
+++. +..+++++.|+ ++||+++.
T Consensus 460 l~~~-~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 460 LALG-KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eecC-cceEEEEecCCeeEEEecccC
Confidence 8876 44577888887 58999864
No 64
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.6e-20 Score=209.60 Aligned_cols=285 Identities=13% Similarity=0.198 Sum_probs=206.4
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-EecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYE-LKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~-~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
.|.+.--...|+++||+.+.+.||.+-.||.|.||++..+-+... +..+....+..+ .+.
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~----------------- 80 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG----------------- 80 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-----------------
Confidence 344555567899999999999999999999999999987655443 443332233332 222
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
+..+++. .+|+|.-||+.+.+.. .......+.|++++.+|.+. .++.|++++++. ++...+.......
T Consensus 81 ----~RLFS~g-~sg~i~EwDl~~lk~~-----~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 81 ----GRLFSSG-LSGSITEWDLHTLKQK-----YNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred ----CeEEeec-CCceEEEEecccCcee-----EEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEee
Confidence 2333333 4899999999998742 22233367899999999987 777777777553 5555543333233
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEe-------cccccceEEEEEeeeCCCCCEEEE
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-------GGHKGSISCLMTFMASSGEALLVS 232 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~-------~~h~~~V~~l~w~~~s~d~~~l~s 232 (1081)
+....+++.+++| +|++..+++|+.||.|++||..+++.++... .+...-|+++. +-. ...+++
T Consensus 150 l~rq~sRvLslsw-----~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~---~Lr-d~tI~s 220 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW-----NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL---FLR-DSTIAS 220 (691)
T ss_pred cccccceEEEEEe-----cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE---Eee-cCcEEE
Confidence 4445689999999 7899999999999999999999887766221 12334466666 233 348999
Q ss_pred EeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcccc
Q 001416 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 233 gs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
|..-|+|.+||...+..++. ...|...|.+++..+ +++++++++.|+.|..+...+.+.. +........
T Consensus 221 gDS~G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~---~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~ 289 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQS------HSCHDADVLALAVAD---NEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDL 289 (691)
T ss_pred ecCCceEEEEcccCcchhhh------hhhhhcceeEEEEcC---CCCeEEEccCCCceEEEEecCCccc--eeeeccccC
Confidence 99999999999999987664 578999999999998 8899999999999999988776441 111223467
Q ss_pred CCCCeEEEeecCCCCEEEEECCceE
Q 001416 313 HSVASWCHPRAPNLDILTCVKDSHI 337 (1081)
Q Consensus 313 h~~~v~~v~~spd~~lls~s~D~~I 337 (1081)
|...+.+++..++ .++++|.|..+
T Consensus 290 h~hdvrs~av~~~-~l~sgG~d~~l 313 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN-ALISGGRDFTL 313 (691)
T ss_pred Ccccceeeeeecc-eEEecceeeEE
Confidence 8888888888877 45577777643
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.9e-22 Score=201.47 Aligned_cols=271 Identities=19% Similarity=0.242 Sum_probs=211.8
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-CCccce-EEe--ccCCCeEEEeecCCCCCcee
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKA-GGVDQR-RLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~-~~~~~v-~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
+.+++|...|.+|+|+-+|..|++|+.|+++++|+++.......... +|.+.+ ... .+....+++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas--------- 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS--------- 84 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec---------
Confidence 67889999999999999999999999999999999988765554432 222222 222 22333444432
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCccccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~ 160 (1081)
.|.+|++||...+++..... . ...=.-+.|+|+|+++++++.+|.+..+|.++.+ +...
T Consensus 85 ------------~dk~ir~wd~r~~k~~~~i~----~--~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~---~~~~ 143 (313)
T KOG1407|consen 85 ------------GDKTIRIWDIRSGKCTARIE----T--KGENINITWSPDGEYIAVGNKDDRITFIDARTYK---IVNE 143 (313)
T ss_pred ------------CCceEEEEEeccCcEEEEee----c--cCcceEEEEcCCCCEEEEecCcccEEEEEecccc---eeeh
Confidence 58999999999998633111 1 1112457899999977777778888889988753 2223
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
......+.-++| +.++.+++.-+..|+|.|..+...+++..+. +|.....|+. ++|+|++|++|+.|-.+.
T Consensus 144 ~~~~~e~ne~~w-----~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~---f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 144 EQFKFEVNEISW-----NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIE---FDPDGRYFATGSADALVS 214 (313)
T ss_pred hcccceeeeeee-----cCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEE---ECCCCceEeeccccceee
Confidence 334456778888 4566677666678999999999999999997 9998877887 799999999999999999
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
+||++.--+.+ .+..++-+|..+.|+. ++++|+++|.|..|-|=++++|..+..+ .+.++-..+
T Consensus 215 LWD~~ELiC~R------~isRldwpVRTlSFS~---dg~~lASaSEDh~IDIA~vetGd~~~eI-------~~~~~t~tV 278 (313)
T KOG1407|consen 215 LWDVDELICER------CISRLDWPVRTLSFSH---DGRMLASASEDHFIDIAEVETGDRVWEI-------PCEGPTFTV 278 (313)
T ss_pred ccChhHhhhhe------eeccccCceEEEEecc---CcceeeccCccceEEeEecccCCeEEEe-------eccCCceeE
Confidence 99998765544 3577889999999998 9999999999999999999999998876 456777899
Q ss_pred eecCCCCEEE
Q 001416 321 PRAPNLDILT 330 (1081)
Q Consensus 321 ~~spd~~lls 330 (1081)
+|||...+|+
T Consensus 279 AWHPk~~LLA 288 (313)
T KOG1407|consen 279 AWHPKRPLLA 288 (313)
T ss_pred EecCCCceee
Confidence 9999999885
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=2.1e-22 Score=206.18 Aligned_cols=311 Identities=15% Similarity=0.191 Sum_probs=226.4
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..+..|+..+++.+|+|||.++|||+.|-.|+|.|++..--....+ ....|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~-----------------------------em~~~ 156 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPK-----------------------------EMISG 156 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh-----------------------------hhccC
Confidence 4577899999999999999999999999999999987321000000 00001
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~ 163 (1081)
++ +.....++++-.| ...|+.+.|+|... ++++++.|+.+. ||+.....+.-.+....
T Consensus 157 ~~-------------------qa~hPvIRTlYDH-~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd 215 (430)
T KOG0640|consen 157 DT-------------------QARHPVIRTLYDH-VDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQD 215 (430)
T ss_pred Cc-------------------ccCCceEeehhhc-cCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence 11 0001124455566 77899999999876 999999998885 89875444444344456
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEe--cccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~--~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
..+|+|+.| +|.|.+++.|.+-.++++||+.+.++...-. .+|++.|+++. +++.+++.++||.||.|++
T Consensus 216 ~~~vrsiSf-----HPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~---Ys~t~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 216 TEPVRSISF-----HPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR---YSSTGSLYVTASKDGAIKL 287 (430)
T ss_pred cceeeeEee-----cCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE---ecCCccEEEEeccCCcEEe
Confidence 689999999 6789999999999999999999988876542 46999999998 6999999999999999999
Q ss_pred EEcCCCCcccccccceeecccC-CcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 242 WSADHGQDSRELVPKLSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~-~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
||--+++|+..+ -.+|. ..|.+..|.. +++++++.+.|..|++|.+.+++++..+..... .+....-+..
T Consensus 288 wDGVS~rCv~t~-----~~AH~gsevcSa~Ftk---n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~-tgrq~~rtqA 358 (430)
T KOG0640|consen 288 WDGVSNRCVRTI-----GNAHGGSEVCSAVFTK---NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT-TGRQKHRTQA 358 (430)
T ss_pred eccccHHHHHHH-----HhhcCCceeeeEEEcc---CCeEEeecCCcceeeeeeecCCceEEEEecCCc-ccchhhhhhh
Confidence 999998888764 25675 4689999998 999999999999999999999999998844211 1111112233
Q ss_pred eecCCCCEEE-EECC-c--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEE
Q 001416 321 PRAPNLDILT-CVKD-S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1081)
Q Consensus 321 ~~spd~~lls-~s~D-~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~ 396 (1081)
.|.....++- --+- + --||.++...... .. -+|.+ .+.++.-+|.++- +.++++|-.. +
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l-------------~s-lgHn~-a~R~i~HSP~~p~-FmTcsdD~ra-R 421 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADRVAL-------------LS-LGHNG-AVRWIVHSPVEPA-FMTCSDDFRA-R 421 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhhhhh-------------cc-cCCCC-CceEEEeCCCCCc-eeeeccccee-e
Confidence 4554444432 1111 1 2488775321111 11 25777 8999999998554 5899999996 9
Q ss_pred EeC
Q 001416 397 EFD 399 (1081)
Q Consensus 397 iwd 399 (1081)
.|-
T Consensus 422 FWy 424 (430)
T KOG0640|consen 422 FWY 424 (430)
T ss_pred eee
Confidence 995
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=231.91 Aligned_cols=210 Identities=12% Similarity=0.113 Sum_probs=161.9
Q ss_pred ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEe
Q 001416 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1081)
Q Consensus 155 ~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs 234 (1081)
+.+..+.+|.+.|..+.|+ ...+|+++|.|.+||||++...+|+..|. |...|+|++ |+|.|.++|++||
T Consensus 360 kP~~ef~GHt~DILDlSWS------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVa--FnPvDDryFiSGS 429 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWS------KNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVA--FNPVDDRYFISGS 429 (712)
T ss_pred cchhhhhccchhheecccc------cCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEE--ecccCCCcEeecc
Confidence 4566688999999999993 46789999999999999999999999995 999999999 3789999999999
Q ss_pred CCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecC----CCcc
Q 001416 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP----VPKL 310 (1081)
Q Consensus 235 ~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~----~~~~ 310 (1081)
.||.||||++...+... ...-..-|++++|.| +|++.+.|+.+|.+++|++...+......- .++.
T Consensus 430 LD~KvRiWsI~d~~Vv~-------W~Dl~~lITAvcy~P---dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVD-------WNDLRDLITAVCYSP---DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred cccceEEeecCcCeeEe-------ehhhhhhheeEEecc---CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 99999999998765332 233347799999999 899999999999999999988776655421 1111
Q ss_pred ccCCCCeEEEeecCCCC--EEEEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCC-ccEEEEEEeCCCCeEE
Q 001416 311 ACHSVASWCHPRAPNLD--ILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLV 385 (1081)
Q Consensus 311 ~~h~~~v~~v~~spd~~--lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~V~~l~~sp~~~~ll 385 (1081)
. |. .|+.+.|.|... +|..+.|. ||+|.+.. ..+..|.+... ..=....|+.+ +..|
T Consensus 500 ~-~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~D-gk~I 561 (712)
T KOG0283|consen 500 Q-GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---------------DLVHKFKGFRNTSSQISASFSSD-GKHI 561 (712)
T ss_pred c-Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccch---------------hhhhhhcccccCCcceeeeEccC-CCEE
Confidence 2 22 799999998665 88889985 68988541 11122332221 11234588887 5566
Q ss_pred EEEECCCeEEEEeCCCCC
Q 001416 386 ATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 386 atgs~dG~Il~iwd~~~~ 403 (1081)
++|++|..| ++|+....
T Consensus 562 Vs~seDs~V-YiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWV-YIWKNDSF 578 (712)
T ss_pred EEeecCceE-EEEeCCCC
Confidence 888899996 99996543
No 68
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-22 Score=205.94 Aligned_cols=328 Identities=13% Similarity=0.195 Sum_probs=236.2
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~ 81 (1081)
.+.|.||.+.|..++-....+.+.+++.|.+.+||.+++|.|+.++. +|...+.++ ++.+..+++++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaS---------- 209 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTAS---------- 209 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEcc----------
Confidence 46788999999999999999999999999999999999999999998 566777766 77788888765
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCC-CCeeecc-cCCCCCeEEEEEecCcEEEEEecCCCcccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVT-SGFASPP-PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPK 159 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~-~~V~sl~-fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~ 159 (1081)
.|++..||...-+-... ......+|.. ..+.+-. -.++-. -..-+++..++. .+..
T Consensus 210 -----------GD~taHIW~~av~~~vP-~~~a~~~hSsEeE~e~sDe~~~d~d--~~~~sD~~tiRv--------Pl~~ 267 (481)
T KOG0300|consen 210 -----------GDETAHIWKAAVNWEVP-SNNAPSDHSSEEEEEHSDEHNRDTD--SSEKSDGHTIRV--------PLMR 267 (481)
T ss_pred -----------CCcchHHHHHhhcCcCC-CCCCCCCCCchhhhhcccccccccc--cccccCCceeee--------eeee
Confidence 47778888632110000 0000111100 0000000 000000 001122223222 3445
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcE
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V 239 (1081)
+.+|...|.|..|+ ..|+.++++|.|.+-.+||++++..+..+. ||....+-++ .+|..++++++|.|.+.
T Consensus 268 ltgH~~vV~a~dWL-----~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcs---tHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 268 LTGHRAVVSACDWL-----AGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCS---THPTQRLVVTSSRDTTF 338 (481)
T ss_pred eeccccceEehhhh-----cCcceeeeeeccccceeeeeccCceecccc-Ccchhccccc---cCCcceEEEEeccCcee
Confidence 67899999999995 578999999999999999999999999997 9999999887 68999999999999999
Q ss_pred EEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc-eeeEecCCCccccCCCCeE
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASW 318 (1081)
Q Consensus 240 ~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~-~~~~~~~~~~~~~h~~~v~ 318 (1081)
++||++.. +. ....++||+..|+++.|.. +..+++|++|++|+|||+++.. ++.++ + -..+++
T Consensus 339 RLWDFRea--I~---sV~VFQGHtdtVTS~vF~~----dd~vVSgSDDrTvKvWdLrNMRsplATI------R-tdS~~N 402 (481)
T KOG0300|consen 339 RLWDFREA--IQ---SVAVFQGHTDTVTSVVFNT----DDRVVSGSDDRTVKVWDLRNMRSPLATI------R-TDSPAN 402 (481)
T ss_pred Eeccchhh--cc---eeeeecccccceeEEEEec----CCceeecCCCceEEEeeeccccCcceee------e-cCCccc
Confidence 99999832 22 3456899999999999985 5689999999999999997643 44443 2 245677
Q ss_pred EEeecCCCCEEEEECCc---eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCC-eEEEEEECCCeE
Q 001416 319 CHPRAPNLDILTCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGVI 394 (1081)
Q Consensus 319 ~v~~spd~~lls~s~D~---~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~-~llatgs~dG~I 394 (1081)
.++.+..+++|+.-.|+ |+||++-.... ..|...-.+|.. .|.|++|..+.+ +-+++++-|..+
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~Rla-----------RlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA-----------RLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecCCCccc-----------cCCcccccccce-eeeeeeccccCccccccccccccee
Confidence 88999889999988886 68998742111 122223457777 899999986522 234777888886
Q ss_pred EEEeCCCC
Q 001416 395 ISEFDPRS 402 (1081)
Q Consensus 395 l~iwd~~~ 402 (1081)
.-|.++.
T Consensus 471 -~gW~in~ 477 (481)
T KOG0300|consen 471 -AGWKINT 477 (481)
T ss_pred -eeeEecc
Confidence 7898764
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.4e-23 Score=212.49 Aligned_cols=245 Identities=18% Similarity=0.269 Sum_probs=199.2
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccc------ccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP------KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~------~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
.+.+.|..|+|||+ ++++|+.|+.+ +||+.+++.+.-. .+..+.+.|.|+.| +.|...+++|+.||.
T Consensus 213 KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-----SRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 213 KSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-----SRDSEMLASGSQDGK 286 (508)
T ss_pred ccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-----cccHHHhhccCcCCc
Confidence 56788999999998 88999999988 6999998754322 23456789999999 789999999999999
Q ss_pred EEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEe
Q 001416 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1081)
Q Consensus 193 I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fs 272 (1081)
|++|.+++|+|++.|..+|...|+|+. |+.|+..++++|.|.++|+-.+.+|+++++ +.||++.|+...|.
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~---FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE------frGHsSyvn~a~ft 357 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLS---FSRDNSQILSASFDQTVRIHGLKSGKCLKE------FRGHSSYVNEATFT 357 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEE---EccCcchhhcccccceEEEeccccchhHHH------hcCccccccceEEc
Confidence 999999999999999889999999998 699999999999999999999999998876 59999999999999
Q ss_pred eecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC--EEEEECCceEEEeccCCcccccc
Q 001416 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHIWAIEHPTYSALTR 350 (1081)
Q Consensus 273 p~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~--lls~s~D~~IWdi~~~~~~~~~~ 350 (1081)
+ +|.++++++.||+|++|+..+.+|+.++++. +..-+|..+..-|.++ ++.|-..+.++-.+..
T Consensus 358 ~---dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q------- 423 (508)
T KOG0275|consen 358 D---DGHHIISASSDGTVKVWHGKTTECLSTFKPL----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ------- 423 (508)
T ss_pred C---CCCeEEEecCCccEEEecCcchhhhhhccCC----CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-------
Confidence 8 9999999999999999999999999999763 3455778888888765 6677776776665532
Q ss_pred cccccCCCCCCeEEc---cCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 351 PLCELSSLVPPQVLA---HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 351 ~~~~~~~~~~~~~l~---~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
+.-+.++. ..++ ..-+.+.+|. +..+.+.+.|+.. +-|...+.
T Consensus 424 -------GQvVrsfsSGkREgG-dFi~~~lSpk-GewiYcigED~vl-YCF~~~sG 469 (508)
T KOG0275|consen 424 -------GQVVRSFSSGKREGG-DFINAILSPK-GEWIYCIGEDGVL-YCFSVLSG 469 (508)
T ss_pred -------ceEEeeeccCCccCC-ceEEEEecCC-CcEEEEEccCcEE-EEEEeecC
Confidence 11112221 1223 5556678998 4555788888884 66654433
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=216.53 Aligned_cols=273 Identities=17% Similarity=0.226 Sum_probs=214.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceE
Q 001416 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1081)
Q Consensus 11 ~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~ 88 (1081)
.+.|.+++|+|..|+=+.....-.+.|++..+...++++.... +.+..+ -.||+.++.|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD----------------- 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGD----------------- 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhc-cceeEEEeecCCeEEEccC-----------------
Confidence 3789999999988743333344579999998877766554221 233333 56788888875
Q ss_pred EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCCCe
Q 001416 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSL 167 (1081)
Q Consensus 89 ~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I 167 (1081)
..|.|+++|..+.. .+.....| ..+|..+.|+|+++.++++|+||+++. ||+.+... .....+|.++|
T Consensus 88 ----~sG~V~vfD~k~r~----iLR~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYV 156 (487)
T KOG0310|consen 88 ----ESGHVKVFDMKSRV----ILRQLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYV 156 (487)
T ss_pred ----CcCcEEEeccccHH----HHHHHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCccee
Confidence 47999999955422 35566677 889999999999999999999999996 89887642 44678999999
Q ss_pred eEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 168 ~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
+|.+|+| .++..++||+.||.|++||.++. ..+..+ .|..+|..+. +-|.|.++++++ ...|++||+.+
T Consensus 157 R~g~~~~----~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl---~lpsgs~iasAg-Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 157 RCGDISP----ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL---ALPSGSLIASAG-GNSVKVWDLTT 226 (487)
T ss_pred Eeecccc----CCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE---EcCCCCEEEEcC-CCeEEEEEecC
Confidence 9999975 35668999999999999999876 666666 6999999997 577888999877 45899999996
Q ss_pred CCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCC
Q 001416 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~ 326 (1081)
|...- ..+..|...|+|+++.. ++..|+|||-|+.|++||+.+.+.+..+ .-.++|.+++.+|++
T Consensus 227 G~qll-----~~~~~H~KtVTcL~l~s---~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-------~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 227 GGQLL-----TSMFNHNKTVTCLRLAS---DSTRLLSGSLDRHVKVFDTTNYKVVHSW-------KYPGPVLSIAVSPDD 291 (487)
T ss_pred Cceeh-----hhhhcccceEEEEEeec---CCceEeecccccceEEEEccceEEEEee-------ecccceeeEEecCCC
Confidence 65321 12345999999999998 8899999999999999999998888775 456789999999998
Q ss_pred CEE-EEECCceE
Q 001416 327 DIL-TCVKDSHI 337 (1081)
Q Consensus 327 ~ll-s~s~D~~I 337 (1081)
+.+ .|..+|-+
T Consensus 292 ~t~viGmsnGlv 303 (487)
T KOG0310|consen 292 QTVVIGMSNGLV 303 (487)
T ss_pred ceEEEeccccee
Confidence 865 56667654
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6e-22 Score=196.13 Aligned_cols=252 Identities=14% Similarity=0.130 Sum_probs=199.6
Q ss_pred ccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeE
Q 001416 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1081)
Q Consensus 114 ~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I 193 (1081)
.+..+ .+.|.++.|+-+|++.+.+|++..+..|++..+ ..+....+|+..|..++. +.|+..+++|+.|..|
T Consensus 12 ~l~~~-qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~-----s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 12 ILDCA-QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAAL-----SSDNSKFASCGGDKAV 83 (307)
T ss_pred eeccc-ccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccc-----cccccccccCCCCceE
Confidence 33444 778999999999996555555555556998876 467778899999999998 6789999999999999
Q ss_pred EEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 194 ~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
.+||+.+|+.++.+. +|.+.|+.++ |+.+...+++||.|.++++||.++.. +.|...+..-...|.++...
T Consensus 84 ~vwDV~TGkv~Rr~r-gH~aqVNtV~---fNeesSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFR-GHLAQVNTVR---FNEESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVA- 154 (307)
T ss_pred EEEEcccCeeeeecc-cccceeeEEE---ecCcceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEec-
Confidence 999999999999998 9999999998 68889999999999999999998865 34666677778899999984
Q ss_pred ecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEECCce--EEEeccCCcccccc
Q 001416 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTR 350 (1081)
Q Consensus 274 ~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~~--IWdi~~~~~~~~~~ 350 (1081)
+..|++||.||+++.||++.|+.... ....+|+|++|++|++ .|+++-|+. +-|-.+
T Consensus 155 ----~heIvaGS~DGtvRtydiR~G~l~sD--------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t-------- 214 (307)
T KOG0316|consen 155 ----EHEIVAGSVDGTVRTYDIRKGTLSSD--------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET-------- 214 (307)
T ss_pred ----ccEEEeeccCCcEEEEEeecceeehh--------hcCCcceeEEecCCCCEEEEeeccceeeecccch--------
Confidence 57899999999999999999987543 3345899999999999 558888874 455443
Q ss_pred cccccCCCCCCeEEccCCCccEE--EEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCC
Q 001416 351 PLCELSSLVPPQVLAHHKKLRVY--CMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTP 412 (1081)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~V~--~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~ 412 (1081)
++.++.+.+|.+ .-. ..++... ...+++|+.||.| ++||+-....+..++.+
T Consensus 215 -------GklL~sYkGhkn-~eykldc~l~qs-dthV~sgSEDG~V-y~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 215 -------GKLLKSYKGHKN-MEYKLDCCLNQS-DTHVFSGSEDGKV-YFWDLVDETQISKLSVV 268 (307)
T ss_pred -------hHHHHHhccccc-ceeeeeeeeccc-ceeEEeccCCceE-EEEEeccceeeeeeccC
Confidence 334445566654 222 2344444 5678999999997 99998877666665543
No 72
>KOG4171 consensus Adenylate/guanylate kinase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.1e-24 Score=249.39 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=108.2
Q ss_pred chHHHHHHHHHhhhhHHHHhhhhcccchhhhcCC---------CCCccccccccccc--ccccchHHHHhhhHHHHHHHH
Q 001416 954 ISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQ---------DHPGLDLNDILTLT--TKKENIVEAVQGIVKFAKEFL 1022 (1081)
Q Consensus 954 lv~ert~~L~~ek~k~~~ll~~~lp~~va~~l~~---------~~~ti~fsdivgft--~~~s~p~~vv~~ln~lyt~fd 1022 (1081)
..++-+++|.+||+|+|.|||+|+|++||+||++ ++|||-|||||||| |+..||+|||++||+|||.||
T Consensus 398 ~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD 477 (671)
T KOG4171|consen 398 KLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFD 477 (671)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999998 89999999999999 999999999999999999999
Q ss_pred HHhhhhhhhchhhhHHHHHHHHhhcccchhhccchhhcccccccccc
Q 001416 1023 DLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANH 1069 (1081)
Q Consensus 1023 ~ii~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1081)
.||+.+||||+|||++ |||+++|+|.+.. .|+..++.|||++..+
T Consensus 478 ~~i~~~~VYKVETIGD-aYm~vsG~P~~~~-~HAe~i~~~AL~Mm~~ 522 (671)
T KOG4171|consen 478 RIIDTHDVYKVETIGD-AYMVVSGLPDASD-YHAEHIADLALGMMEE 522 (671)
T ss_pred HhhcccCeEEEeeccc-hheeecCCCCCCh-hHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999887 8999999999987643
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=4.6e-21 Score=210.93 Aligned_cols=242 Identities=22% Similarity=0.346 Sum_probs=197.9
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
...+.+|...+.++.|+|+++++++++.||.|++||+.+++.+..+..+
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~------------------------------- 92 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH------------------------------- 92 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-------------------------------
Confidence 3567889999999999999999999999999999999876544444411
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEe-cCcEEEEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s-~d~~i~wd~~t~~~~~~~~~~~ 162 (1081)
...+.++.|+|+++ ++++++ ++.+.+||+.+.+ .......
T Consensus 93 ------------------------------------~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~~~~ 133 (289)
T cd00200 93 ------------------------------------TSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK--CLTTLRG 133 (289)
T ss_pred ------------------------------------CCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE--EEEEecc
Confidence 23467788888866 777777 6666679988653 3334557
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|...+.+++| +|++.++++++.|+.|++||+++++.+..+. .|...+.++. ++|+++.+++++.|+.|++|
T Consensus 134 ~~~~i~~~~~-----~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 134 HTDWVNSVAF-----SPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVA---FSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred CCCcEEEEEE-----cCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEE---ECCCcCEEEEecCCCcEEEE
Confidence 7889999999 5778888888889999999999888888887 8999999998 48888899999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
|+..++... .+..|...+.+++|+| ++.++++++.|+.|++||+.+++....+ ..|...+.++.|
T Consensus 205 d~~~~~~~~------~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~i~~~~~~~~~~~~------~~~~~~i~~~~~ 269 (289)
T cd00200 205 DLSTGKCLG------TLRGHENGVNSVAFSP---DGYLLASGSEDGTIRVWDLRTGECVQTL------SGHTNSVTSLAW 269 (289)
T ss_pred ECCCCceec------chhhcCCceEEEEEcC---CCcEEEEEcCCCcEEEEEcCCceeEEEc------cccCCcEEEEEE
Confidence 998876443 3457888999999999 7888888888999999999988877765 578889999999
Q ss_pred cCCCCEE-EEECCc--eEEE
Q 001416 323 APNLDIL-TCVKDS--HIWA 339 (1081)
Q Consensus 323 spd~~ll-s~s~D~--~IWd 339 (1081)
+|++.++ +++.|+ ++|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 9998855 677776 4664
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=8.5e-22 Score=233.14 Aligned_cols=305 Identities=13% Similarity=0.126 Sum_probs=224.8
Q ss_pred eCCC-CCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 7 FRPT-NDKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 7 l~gH-~~~V~~lafsp~g~~Lasgs--~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
+.+| ...|.+|+.||++..++||+ .||.++||+.+. ...+..
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~~~--------------------------------- 52 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP--VLDEKE--------------------------------- 52 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeecccc--ccchhh---------------------------------
Confidence 4444 56789999999999999999 899999999753 111111
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecC----------C
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------M 152 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t----------~ 152 (1081)
.||.. ....+.....| .+.|.|+.|+|||+ .|++|++|+++ +|.... +
T Consensus 53 ---------------~~~~~----l~k~l~~m~~h-~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g 111 (942)
T KOG0973|consen 53 ---------------EKNEN----LPKHLCTMDDH-DGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTG 111 (942)
T ss_pred ---------------hhhcc----cchhheeeccc-cCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccc
Confidence 01111 01112233344 77899999999998 89999999998 497762 0
Q ss_pred C------cccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCC
Q 001416 153 R------GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1081)
Q Consensus 153 ~------~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d 226 (1081)
. .+.+..+.+|...|..++| +|++.++++++.|++|.+||.++.+.+..+. +|.+.|..+.| .|-
T Consensus 112 ~~~~vE~wk~~~~l~~H~~DV~Dv~W-----sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~---DP~ 182 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGHDSDVLDVNW-----SPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSW---DPI 182 (942)
T ss_pred cccccceeeEEEEEecCCCccceecc-----CCCccEEEEecccceEEEEccccceeeeeee-cccccccceEE---CCc
Confidence 0 1234456789999999999 7899999999999999999999999999987 99999999994 999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEEC----CCeEEEEECCCCceee
Q 001416 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA----DKTLAIWDTVSFKELR 302 (1081)
Q Consensus 227 ~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~----Dg~V~iWDl~t~~~~~ 302 (1081)
|++|+|-+.|++|++|++.+....+.+...+.-..-+..+..+.|+| ||.+|++... -.++.|.+-.+.+.-.
T Consensus 183 Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP---DG~~las~nA~n~~~~~~~IieR~tWk~~~ 259 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP---DGHHLASPNAVNGGKSTIAIIERGTWKVDK 259 (942)
T ss_pred cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC---CcCeecchhhccCCcceeEEEecCCceeee
Confidence 99999999999999999777554433222221122334578899999 9999998753 4568888877777554
Q ss_pred EecCCCccccCCCCeEEEeecCC------C---------C--EE-EEECCc--eEEEeccCCcccccccccccCCCCCCe
Q 001416 303 RIKPVPKLACHSVASWCHPRAPN------L---------D--IL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQ 362 (1081)
Q Consensus 303 ~~~~~~~~~~h~~~v~~v~~spd------~---------~--ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~ 362 (1081)
. +.+|..++.++.|+|. . . ++ +||.|. .||.... .+|+.
T Consensus 260 ~------LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~---------------~RPl~ 318 (942)
T KOG0973|consen 260 D------LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL---------------PRPLF 318 (942)
T ss_pred e------eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC---------------CCchh
Confidence 4 4899999999999982 1 1 33 466786 5898754 23333
Q ss_pred EEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 363 VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 363 ~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
....-....|..++|+|| +..|.+++.||+| .+....+
T Consensus 319 vi~~lf~~SI~DmsWspd-G~~LfacS~DGtV-~~i~Fee 356 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPD-GFSLFACSLDGTV-ALIHFEE 356 (942)
T ss_pred hhhhhhcCceeeeeEcCC-CCeEEEEecCCeE-EEEEcch
Confidence 332223348999999999 7777999999997 6766544
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.7e-21 Score=219.08 Aligned_cols=238 Identities=18% Similarity=0.235 Sum_probs=194.8
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc-CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~-~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd 197 (1081)
...|+++.|+++|. .|++|..++.+ +||..+.+ .+..... |...|.|++| ++..+.+|+.|+.|..+|
T Consensus 217 ~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW-------~~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAW-------NSSVLSSGSRDGKILNHD 286 (484)
T ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEec-------cCceEEEecCCCcEEEEE
Confidence 45689999999998 55555555555 79988753 4555666 8999999999 477899999999999999
Q ss_pred cCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCC
Q 001416 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1081)
Q Consensus 198 ~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~ 277 (1081)
++..+.......+|...|..++| ++++.+|++|+.|+.+.|||..... +.+.+..|...|..++|+|. .
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLkw---s~d~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~--q 355 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLKW---SPDGNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPW--Q 355 (484)
T ss_pred EecchhhhhhhhcccceeeeeEE---CCCCCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEeeeCCC--c
Confidence 98776555423489999999996 8999999999999999999995544 56678999999999999994 7
Q ss_pred CCEEEEEE--CCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEEC--C--ceEEEeccCCcccccc
Q 001416 278 SPQLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVK--D--SHIWAIEHPTYSALTR 350 (1081)
Q Consensus 278 ~~~Lvsgs--~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~--D--~~IWdi~~~~~~~~~~ 350 (1081)
..+||+|+ .|++|++||..+++.++.+ .-...|..+.|++..+ ++++.+ + .+||++.+
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-------- 420 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSV-------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-------- 420 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEeccc-------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--------
Confidence 78999987 5999999999999988765 3456789999999876 665433 2 37999875
Q ss_pred cccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
..++..+.+|.. +|..++++|+ +..+++|+.|.++ ++|++-..
T Consensus 421 -------~~~~~~l~gH~~-RVl~la~SPd-g~~i~t~a~DETl-rfw~~f~~ 463 (484)
T KOG0305|consen 421 -------MKLVAELLGHTS-RVLYLALSPD-GETIVTGAADETL-RFWNLFDE 463 (484)
T ss_pred -------cceeeeecCCcc-eeEEEEECCC-CCEEEEecccCcE-EeccccCC
Confidence 455567889998 9999999999 6677999999995 99986653
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.2e-22 Score=212.62 Aligned_cols=283 Identities=14% Similarity=0.166 Sum_probs=211.5
Q ss_pred eeeCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 5 KAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g-~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
..|.||.+.|.|++=||.. ..++||+.||.|+|||+.+..++.+++.+ ...+..+.-+...+.+++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-~G~V~Gi~v~~~~~~tvg------------ 126 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-EGLVRGICVTQTSFFTVG------------ 126 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-cCceeeEEecccceEEec------------
Confidence 4578999999999999987 69999999999999999999999999954 344444422223333322
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccC
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~ 163 (1081)
.|.+|+.|-+.... . ..-+..+.+..+.-+..+. .+++|+. .+-+||.+.. .++......
T Consensus 127 ---------dDKtvK~wk~~~~p-----~--~tilg~s~~~gIdh~~~~~-~FaTcGe-~i~IWD~~R~--~Pv~smswG 186 (433)
T KOG0268|consen 127 ---------DDKTVKQWKIDGPP-----L--HTILGKSVYLGIDHHRKNS-VFATCGE-QIDIWDEQRD--NPVSSMSWG 186 (433)
T ss_pred ---------CCcceeeeeccCCc-----c--eeeeccccccccccccccc-cccccCc-eeeecccccC--CccceeecC
Confidence 58999999877631 2 2222244555665555454 5666554 3557988754 355566777
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
.+.|.|+.|+|. ....|++|..|+.|.+||+++.++++.+. -...-+.++| +|++.-|++|+.|..++.+|
T Consensus 187 ~Dti~svkfNpv----ETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~Isw---nPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 187 ADSISSVKFNPV----ETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICW---NPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred CCceeEEecCCC----cchheeeeccCCceEEEecccCCccceee--eeccccceec---Cccccceeeccccccceehh
Confidence 889999999542 34467778899999999999998887764 4455577886 66999999999999999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeec
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~s 323 (1081)
++.-+ .|.....+|.+.|.+++|+| .|.-+++||.|++|+||..+.+..-..+ ..---..|.|+.||
T Consensus 258 mR~l~-----~p~~v~~dhvsAV~dVdfsp---tG~EfvsgsyDksIRIf~~~~~~SRdiY-----htkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 258 MRNLS-----RPLNVHKDHVSAVMDVDFSP---TGQEFVSGSYDKSIRIFPVNHGHSRDIY-----HTKRMQHVFCVKYS 324 (433)
T ss_pred hhhhc-----ccchhhcccceeEEEeccCC---CcchhccccccceEEEeecCCCcchhhh-----hHhhhheeeEEEEe
Confidence 98754 25556789999999999999 9999999999999999999876643221 01112478999999
Q ss_pred CCCCEE-EEECCc--eEEEecc
Q 001416 324 PNLDIL-TCVKDS--HIWAIEH 342 (1081)
Q Consensus 324 pd~~ll-s~s~D~--~IWdi~~ 342 (1081)
-|.+++ +||.|+ |+|..+.
T Consensus 325 ~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 325 MDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred ccccEEEecCCCcceeeeecch
Confidence 999976 677775 7898764
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=230.25 Aligned_cols=243 Identities=20% Similarity=0.300 Sum_probs=208.2
Q ss_pred eCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCc
Q 001416 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1081)
Q Consensus 7 l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~ 86 (1081)
|.||.+.|.+++|..-+..|++|+.|.+++|||..+|+++..+. +|.+.+++++.....+.+|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs--------------- 308 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGS--------------- 308 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeecc---------------
Confidence 89999999999999888899999999999999999999999999 67788888877776776654
Q ss_pred eEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCC
Q 001416 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1081)
Q Consensus 87 V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~ 165 (1081)
.|.+|++|++.++.+ +....+| ...|.++..+ +. ++++|+.++.+ +||+.++ +++..+.+|..
T Consensus 309 ------~D~tVkVW~v~n~~~----l~l~~~h-~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~ 372 (537)
T KOG0274|consen 309 ------RDNTVKVWDVTNGAC----LNLLRGH-TGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG--KCLKSLSGHTG 372 (537)
T ss_pred ------CCceEEEEeccCcce----EEEeccc-cccEEEEEec--CC-EEEEEecCceEEEEEhhhc--eeeeeecCCcc
Confidence 599999999998885 5566665 8999999997 44 67777777755 6999975 57788899999
Q ss_pred CeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
+|.++.+ .+. ..+++|+.|++|++||+.+. +++.++. +|...|+++. ..++.|++++.|++|++||.
T Consensus 373 ~V~sl~~-----~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~-----~~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 373 RVYSLIV-----DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLL-----LRDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred eEEEEEe-----cCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccc-----cccceeEeccccccEEEeec
Confidence 9999988 222 89999999999999999999 9999997 9999998775 45789999999999999999
Q ss_pred CCCCcccccccceeecc-cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEe
Q 001416 245 DHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~ 304 (1081)
..+++.+. +++ |...|..+++. .+.+++++.||++++||++++++.+.+
T Consensus 441 ~~~~~~~~------~~~~~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 441 EEGECLRT------LEGRHVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccCceeee------eccCCcccEEEeecC-----cceEEEEecCCeeEEEecccCchhhhh
Confidence 99987664 555 66888888874 368999999999999999999988765
No 78
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=1.7e-20 Score=220.69 Aligned_cols=206 Identities=18% Similarity=0.215 Sum_probs=158.7
Q ss_pred ccccCCCCeeEEEEeeccccC-CCCEEEEEECCCeEEEEEcCCC-------eEEEEEecccccceEEEEEeeeCCC-CCE
Q 001416 159 KQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSG-EAL 229 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp-~~~~l~sgs~Dg~I~lwd~~~~-------~~~~~~~~~h~~~V~~l~w~~~s~d-~~~ 229 (1081)
.+.+|.+.|++++| +| ++.+|++|+.|++|++||+.++ ..+..+. +|...|.+++| +|+ +++
T Consensus 70 ~l~GH~~~V~~v~f-----sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f---~P~~~~i 140 (493)
T PTZ00421 70 ILLGQEGPIIDVAF-----NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSF---HPSAMNV 140 (493)
T ss_pred eEeCCCCCEEEEEE-----cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEe---CcCCCCE
Confidence 46789999999999 56 7889999999999999999754 3456666 89999999994 665 479
Q ss_pred EEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCc
Q 001416 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK 309 (1081)
Q Consensus 230 l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~ 309 (1081)
|++|+.|++|++||+.+++.. ..+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+
T Consensus 141 LaSgs~DgtVrIWDl~tg~~~------~~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~rsg~~v~tl----- 206 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKAV------EVIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPRDGTIVSSV----- 206 (493)
T ss_pred EEEEeCCCEEEEEECCCCeEE------EEEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECCCCcEEEEE-----
Confidence 999999999999999987643 34688999999999999 9999999999999999999999887765
Q ss_pred cccCCCC-eEEEeecCCCCE-EEEEC----Cc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCC
Q 001416 310 LACHSVA-SWCHPRAPNLDI-LTCVK----DS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQ 381 (1081)
Q Consensus 310 ~~~h~~~-v~~v~~spd~~l-ls~s~----D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~ 381 (1081)
.+|... +..+.|.|++.. ++++. |+ ++||++... .+......+....+....|++++
T Consensus 207 -~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------------~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 207 -EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--------------SPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred -ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--------------CceeEeccCCCCceEEEEEcCCC
Confidence 567654 346778888764 45542 43 689997521 12222322333356677889985
Q ss_pred CeEEEEEE-CCCeEEEEeCCCCCC
Q 001416 382 PHLVATGT-NVGVIISEFDPRSLP 404 (1081)
Q Consensus 382 ~~llatgs-~dG~Il~iwd~~~~~ 404 (1081)
. ++++|+ .||.| ++||++...
T Consensus 272 ~-~L~lggkgDg~I-riwdl~~~~ 293 (493)
T PTZ00421 272 N-LLYIGSKGEGNI-RCFELMNER 293 (493)
T ss_pred C-EEEEEEeCCCeE-EEEEeeCCc
Confidence 4 445554 69996 999987543
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=210.04 Aligned_cols=261 Identities=16% Similarity=0.201 Sum_probs=199.9
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccc--------ccccccCCCCeeEEEEeeccccCCCCEEEEEECC
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD--------IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD 190 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~--------~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D 190 (1081)
.+.|+.+..-|+...++++.+.++-+ +||+....... -.++.+|.+.-..++|++ .....+++|+.|
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~----~~~g~Lls~~~d 199 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR----QQEGTLLSGSDD 199 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc----ccceeEeeccCC
Confidence 67788899999999888887777655 69987543222 124667877788899964 244579999999
Q ss_pred CeEEEEEcCCCe-------EEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccC
Q 001416 191 GVIRVLSMISWK-------LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1081)
Q Consensus 191 g~I~lwd~~~~~-------~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~ 263 (1081)
++|++||+.... ....+ .+|...|..++|. ..+..+|++++.|+.+.|||+++++ . ++.....+|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h--~~h~~lF~sv~dd~~L~iwD~R~~~--~--~~~~~~~ah~ 272 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWH--PLHEDLFGSVGDDGKLMIWDTRSNT--S--KPSHSVKAHS 272 (422)
T ss_pred CcEEEEeccccccCCccccceEEe-ecCCcceehhhcc--ccchhhheeecCCCeEEEEEcCCCC--C--CCcccccccC
Confidence 999999996421 22344 4999999999975 6677899999999999999999731 1 2445678999
Q ss_pred CcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EE-EEECCce--EEE
Q 001416 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH--IWA 339 (1081)
Q Consensus 264 ~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-ll-s~s~D~~--IWd 339 (1081)
+.|+|++|+| -++..|+|||.|++|++||+++-+. +..++.+|...|.++.|+|... ++ ++|.|++ |||
T Consensus 273 ~~vn~~~fnp--~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 273 AEVNCVAFNP--FNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred CceeEEEeCC--CCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 9999999999 4789999999999999999987543 3455699999999999999877 55 5677875 899
Q ss_pred eccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 340 IEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 340 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
+..-... ....-.+-.+..++..-.||.. .|..+.|+|..+..|++.++|+. |.||...
T Consensus 346 ls~ig~e-q~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~-LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEE-QSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNI-LQIWQMA 404 (422)
T ss_pred ccccccc-cChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCce-EEEeecc
Confidence 9853211 1111122222344455677888 89999999999999999999998 5999855
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=217.37 Aligned_cols=247 Identities=15% Similarity=0.219 Sum_probs=197.0
Q ss_pred CCCCceE---EEEEcC-CCCEEEEEeCCCcEEEEECCCCc------EEEEEecCCccceEEe--ccCCCeEEEeecCCCC
Q 001416 9 PTNDKIV---KIQLHP-THPWLVTADASDHVSVWNWEHRQ------VIYELKAGGVDQRRLV--GAKLEKLAEGELEHKG 76 (1081)
Q Consensus 9 gH~~~V~---~lafsp-~g~~Lasgs~dg~I~IWd~~t~~------~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~ 76 (1081)
.|...|. .+..++ .+++|+||+.||.|++|+..... ++.+++ +|.+++.-+ ..+++.+.+++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~S----- 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISAS----- 92 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEec-----
Confidence 4555555 555554 56689999999999999986432 244454 556665544 55666777765
Q ss_pred CceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcc
Q 001416 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1081)
Q Consensus 77 ~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~ 155 (1081)
.|-+|++|+...+. .....+...| .+.|.+++.....+.++++|+-|+-+ +||++++...
T Consensus 93 ----------------sDtTVK~W~~~~~~--~~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 93 ----------------SDTTVKVWNAHKDN--TFCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred ----------------CCceEEEeecccCc--chhHhhhhcc-cchheeeeecccCceeEEecCCCccEEEEEccCcchh
Confidence 69999999998875 2345666677 89999999944444588888877766 5999976321
Q ss_pred c--------cccc-ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCC
Q 001416 156 D--------IPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1081)
Q Consensus 156 ~--------~~~~-~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d 226 (1081)
. .... .++...|++++. ++.|..|++|+..+.+++||.++.+.+..+. ||+..|.++. .++|
T Consensus 154 l~~s~n~~t~~sl~sG~k~siYSLA~-----N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll---~~dD 224 (735)
T KOG0308|consen 154 LVASFNNVTVNSLGSGPKDSIYSLAM-----NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLL---VNDD 224 (735)
T ss_pred hhhhccccccccCCCCCccceeeeec-----CCcceEEEecCcccceEEeccccccceeeee-ccccceEEEE---EcCC
Confidence 1 1112 267789999999 6788999999999999999999999999998 9999999997 6999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC
Q 001416 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1081)
Q Consensus 227 ~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~ 298 (1081)
|..++|+|.||+|++||+...+++.. +..|+.+|+++..+| +-.++.+|+.||.|..=|+++.
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T------~~vH~e~VWaL~~~~---sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLAT------YIVHKEGVWALQSSP---SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeee------EEeccCceEEEeeCC---CcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999887664 688999999999998 8899999999999999999884
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=4.9e-22 Score=211.36 Aligned_cols=286 Identities=13% Similarity=0.149 Sum_probs=219.8
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..+..|.+.|..+.|-++...|+||+.|..|++|+....+ .++.
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~---------------------------------- 212 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELI---------------------------------- 212 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhh----------------------------------
Confidence 4567899999999999998999999999999999986433 1110
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~ 164 (1081)
.++.+. .+.|+++.|.++++++|+++.++...+|+....+ ...++.+|.
T Consensus 213 ----------------------------~tLaGs-~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~~TLsGHt 261 (459)
T KOG0288|consen 213 ----------------------------STLAGS-LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LRHTLSGHT 261 (459)
T ss_pred ----------------------------hhhhcc-CCCcceeeecCCCceEEeecCCCceeeeeccchh--hhhhhcccc
Confidence 111111 4567888999999988888887778889998864 455678899
Q ss_pred CCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
+.|+++.|. .....+++|+.|.+|++||+....|.++.. ....+..+. .. +..++||-.|++||+||+
T Consensus 262 dkVt~ak~~-----~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~---~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 262 DKVTAAKFK-----LSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIV---CS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred cceeeehhh-----ccccceeeccccchhhhhhhhhhheecccc--ccccccceE---ec--ceeeeecccccceEEEec
Confidence 999999993 444459999999999999999988888775 334555554 12 567899999999999999
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
++.....+ ...+ +.|+++..++ ++..|.+++.|.++.+.|+++....+.+.......+|. .+.+.|||
T Consensus 330 Rs~~~~~s------v~~g-g~vtSl~ls~---~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSp 397 (459)
T KOG0288|consen 330 RSADKTRS------VPLG-GRVTSLDLSM---DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSP 397 (459)
T ss_pred cCCceeeE------eecC-cceeeEeecc---CCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECC
Confidence 99875543 3444 4899999999 89999999999999999999998888775433334443 67899999
Q ss_pred CCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCC-ccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 325 NLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 325 d~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
++.|+ +||.|+ .||++.++ +....+...+. ..|++++|+|.|..+ ++++.++.+ .+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tg---------------KlE~~l~~s~s~~aI~s~~W~~sG~~L-lsadk~~~v-~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTG---------------KLEKVLSLSTSNAAITSLSWNPSGSGL-LSADKQKAV-TLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCc---------------eEEEEeccCCCCcceEEEEEcCCCchh-hcccCCcce-Eec
Confidence 99988 678887 58998863 22233333333 269999999996555 777778886 788
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.7e-19 Score=202.21 Aligned_cols=456 Identities=14% Similarity=0.152 Sum_probs=284.9
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs--~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
+.+..|...++|++|+++|++++||- ....++||++.+-..+.+|..|. -.+.++ +|.++++++.+
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHK-Y~vtcvaFsp~~kyvvSVG--------- 141 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHK-YNVTCVAFSPGNKYVVSVG--------- 141 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhcc-ccceeeeecCCCcEEEeec---------
Confidence 34567888999999999999999985 66789999999988888888554 444555 88888888753
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcc--ccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DIP 158 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~--~~~ 158 (1081)
.. +|..|.+||+..+-. .......+.|..++|+.+|. ++++.+..++..|.++..+.- .++
T Consensus 142 ----sQ------HDMIVnv~dWr~N~~------~asnkiss~Vsav~fsEdgS-YfvT~gnrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 142 ----SQ------HDMIVNVNDWRVNSS------GASNKISSVVSAVAFSEDGS-YFVTSGNRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred ----cc------cceEEEhhhhhhccc------ccccccceeEEEEEEccCCc-eeeeeeeeeEEEEEeeccccccCCcc
Confidence 33 788999999876542 23334467899999999998 888888888888977644310 000
Q ss_pred cc--------------------c-------------cC-----------------CCCeeEEEEeeccccCCCCEEEEEE
Q 001416 159 KQ--------------------E-------------LD-----------------NKSLVCMEFLSRSAVGDVPLVAFGS 188 (1081)
Q Consensus 159 ~~--------------------~-------------~~-----------------~~~I~~ia~~p~~~sp~~~~l~sgs 188 (1081)
.. . +| .....||+. +..+|++|+
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV-------s~r~I~cgC 277 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV-------SSRLIACGC 277 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee-------ecceEEEee
Confidence 00 0 00 011234444 578999999
Q ss_pred CCCeEEEEEcCCCeEEEEEecccc---------------------cceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 001416 189 SDGVIRVLSMISWKLVRRYTGGHK---------------------GSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1081)
Q Consensus 189 ~Dg~I~lwd~~~~~~~~~~~~~h~---------------------~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~ 247 (1081)
.+|.|++|+..+...+.++...|. ..--+++ +.|++....|...-.|..++|||++.-
T Consensus 278 a~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA-~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 278 AKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA-CQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred ccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE-EEecCCCceEEEEEcCceEEEEecccc
Confidence 999999999877655544432221 0112333 237888889999999999999999886
Q ss_pred CcccccccceeecccCCcEEEEEEeee-cC-------CCCEEEEEECCCeEEEEECCCCceeeEec--CC----------
Q 001416 248 QDSRELVPKLSLKAHDGGVVAVELSRV-MG-------GSPQLITIGADKTLAIWDTVSFKELRRIK--PV---------- 307 (1081)
Q Consensus 248 ~~~~~~~~~~~l~~h~~~V~~v~fsp~-~~-------~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~--~~---------- 307 (1081)
+.+. ....+--|...|+++.-.|- .. -...++|++.|++|++||+..+..-+.+. .+
T Consensus 357 ~kvg---k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 357 NKVG---KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred cccc---ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 5443 23345568888888876661 00 12358999999999999997632111110 00
Q ss_pred -------------------CccccCCCCeEEEeecCCCCEEEEECC---ceEEEeccCCcccccccccccCCCCCCeEEc
Q 001416 308 -------------------PKLACHSVASWCHPRAPNLDILTCVKD---SHIWAIEHPTYSALTRPLCELSSLVPPQVLA 365 (1081)
Q Consensus 308 -------------------~~~~~h~~~v~~v~~spd~~lls~s~D---~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (1081)
.........+.+++.+|+|+.|+.|.- .|||++... .....+.
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l---------------~~~~~~e 498 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL---------------EYTCFME 498 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh---------------hhhhhee
Confidence 011122347889999999999976654 389999852 2222456
Q ss_pred cCCCccEEEEEEeCC--CCeEEEEEECCCeEEEEeCCCC-CCCCcccCCCCCCCCceEEEEecC-cEEEEEEeecCCCCC
Q 001416 366 HHKKLRVYCMVAHSL--QPHLVATGTNVGVIISEFDPRS-LPAVAPLPTPSGSRDHSAVYIVER-ELKLVNFQLSSAANP 441 (1081)
Q Consensus 366 ~~~~~~V~~l~~sp~--~~~llatgs~dG~Il~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~~~~ 441 (1081)
.|.. .|.|+.|+-- +..|||+++.|..| +++|... ...++++...+.+- .++-|+..+ ..++....- ...
T Consensus 499 AHes-EilcLeyS~p~~~~kLLASasrdRlI-HV~Dv~rny~l~qtld~HSssI-TsvKFa~~gln~~MiscGA---Dks 572 (1080)
T KOG1408|consen 499 AHES-EILCLEYSFPVLTNKLLASASRDRLI-HVYDVKRNYDLVQTLDGHSSSI-TSVKFACNGLNRKMISCGA---DKS 572 (1080)
T ss_pred cccc-eeEEEeecCchhhhHhhhhccCCceE-EEEecccccchhhhhcccccce-eEEEEeecCCceEEEeccC---chh
Confidence 6777 8999999842 35688999999997 9999764 34444444333222 223333222 222222110 000
Q ss_pred CCCCCcccCCCCCcCCCchhHHhhhhcccccccccCCCCCCeEEEccCCCEEEEecCCCCceEEEEecCeEEee------
Q 001416 442 SLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD------ 515 (1081)
Q Consensus 442 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~S~~G~~lav~~~~~~~~~i~~~~~~~~~~------ 515 (1081)
.+-....-..+|.. ..+.-.+. .+...-.+.+-|+.++++.++ .+..+.||.+..-+.+.
T Consensus 573 imFr~~qk~~~g~~------------f~r~t~t~-~ktTlYDm~Vdp~~k~v~t~c-QDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 573 IMFRVNQKASSGRL------------FPRHTQTL-SKTTLYDMAVDPTSKLVVTVC-QDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred hheehhccccCcee------------cccccccc-ccceEEEeeeCCCcceEEEEe-cccceEEEeccccceeeeecccc
Confidence 00000000001100 00000000 111111478899999998774 77889999987654322
Q ss_pred --cCceeEEEEecCccccee
Q 001416 516 --SGSARLLAWDTCRDRFAI 533 (1081)
Q Consensus 516 --~G~~~~~aW~~~~~~~a~ 533 (1081)
.|.-.-+.-+|.+...|.
T Consensus 639 ~~eG~lIKv~lDPSgiY~at 658 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLAT 658 (1080)
T ss_pred cCCCceEEEEECCCccEEEE
Confidence 355555555665544443
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=203.76 Aligned_cols=310 Identities=15% Similarity=0.199 Sum_probs=228.8
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
++.+..|.-.|.|++++|+..++++++.||+|.=|++.+|+...-+-... .+ +- .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev---------~k-------------~~ 190 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EV---------LK-------------SH 190 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hh---------hh-------------hc
Confidence 46678899999999999999999999999999999999887553222110 00 00 00
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
+.+ ..... ..| ...+.+++.++||+ +|++|+.|..+ +||.++.+ .+..+..
T Consensus 191 ~~~-----------------------~k~~r-~~h-~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t~e--hv~~~~g 242 (479)
T KOG0299|consen 191 GNP-----------------------LKESR-KGH-VKEILTLAVSSDGK-YLATGGRDRHVQIWDCDTLE--HVKVFKG 242 (479)
T ss_pred cCC-----------------------CCccc-ccc-cceeEEEEEcCCCc-EEEecCCCceEEEecCcccc--hhhcccc
Confidence 000 00111 244 66789999999998 77777777766 79999975 5666899
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|.+.|.+++| -.....+++++.|++|++|++.....+.++. ||++.|.++. ...-++.+-+|+.|+++++|
T Consensus 243 hr~~V~~L~f-----r~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~Id---aL~reR~vtVGgrDrT~rlw 313 (479)
T KOG0299|consen 243 HRGAVSSLAF-----RKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGID---ALSRERCVTVGGRDRTVRLW 313 (479)
T ss_pred cccceeeeee-----ecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeec---hhcccceEEeccccceeEEE
Confidence 9999999999 3445579999999999999999888888887 9999999998 35556677777799999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcc------ccCCCC
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL------ACHSVA 316 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~------~~h~~~ 316 (1081)
++.... ...+.+|.+.+-|++|- +...+++||+||.|.+|++.+.+++.+....+.. ..+..+
T Consensus 314 Ki~ees-------qlifrg~~~sidcv~~I----n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W 382 (479)
T KOG0299|consen 314 KIPEES-------QLIFRGGEGSIDCVAFI----NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW 382 (479)
T ss_pred eccccc-------eeeeeCCCCCeeeEEEe----cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc
Confidence 995432 34578999999999997 5689999999999999999999988776443322 122348
Q ss_pred eEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCe
Q 001416 317 SWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1081)
Q Consensus 317 v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~ 393 (1081)
|++++..|...++ ++|.+| |+|-+..+ .+. ..++..++ -.+-|++++|++++..+++..+.+-.
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g-~r~----------i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDG-LRA----------INLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCC-ccc----------cceeeecc--cccEEEEEEEccCCCEEEEecccccc
Confidence 9999999999987 677776 89999863 111 12222332 22389999999996656555444444
Q ss_pred EEEEeC
Q 001416 394 IISEFD 399 (1081)
Q Consensus 394 Il~iwd 399 (1081)
+--|-
T Consensus 450 -lGRW~ 454 (479)
T KOG0299|consen 450 -LGRWW 454 (479)
T ss_pred -cceee
Confidence 34443
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=212.81 Aligned_cols=274 Identities=16% Similarity=0.264 Sum_probs=212.7
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-CCccceEE-e---ccCCCeEEEeecCCCCCce
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKA-GGVDQRRL-V---GAKLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~-~~~~~v~~-v---s~~~~~lasg~~d~~~~~~ 79 (1081)
+.+.||+..|+.+++.+.. ++++++.||++++|+-..++.+.+... ++...+.. + ..+.-.+.+|+
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-------- 78 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-------- 78 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec--------
Confidence 5688999999999988754 899999999999999876666553222 22222211 1 11222233332
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccc
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~ 158 (1081)
.|.++.+|...+... ..++.+| .+.|.++.-..++. +++||.|... +|-... ...
T Consensus 79 -------------~D~~i~v~~~~~~~P----~~~LkgH-~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~----l~~ 134 (745)
T KOG0301|consen 79 -------------MDTTIIVFKLSQAEP----LYTLKGH-KSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE----LVY 134 (745)
T ss_pred -------------ccceEEEEecCCCCc----hhhhhcc-ccceeeeecCCcCc--eEecccccceEEecchh----hhc
Confidence 699999999988874 7788899 88899998777764 7888888777 595443 344
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCc
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~ 238 (1081)
...+|...|++++.+| ++ .++|||.|.+|++|.- ++++++|. ||++.|..++. -+ +..|+|++.||.
T Consensus 135 ~l~gH~asVWAv~~l~-----e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~v---l~-~~~flScsNDg~ 201 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLP-----EN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAV---LD-DSHFLSCSNDGS 201 (745)
T ss_pred ccCCcchheeeeeecC-----CC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEE---ec-CCCeEeecCCce
Confidence 4789999999999964 44 7999999999999975 78888997 99999999983 33 347999999999
Q ss_pred EEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeE
Q 001416 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1081)
Q Consensus 239 V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~ 318 (1081)
|++|++ ++.++. .+.+|++-|.+++..+ ++..++|++.|++++||+.. .+.+.+ .-....+|
T Consensus 202 Ir~w~~-~ge~l~------~~~ghtn~vYsis~~~---~~~~Ivs~gEDrtlriW~~~--e~~q~I------~lPttsiW 263 (745)
T KOG0301|consen 202 IRLWDL-DGEVLL------EMHGHTNFVYSISMAL---SDGLIVSTGEDRTLRIWKKD--ECVQVI------TLPTTSIW 263 (745)
T ss_pred EEEEec-cCceee------eeeccceEEEEEEecC---CCCeEEEecCCceEEEeecC--ceEEEE------ecCccceE
Confidence 999999 555444 3689999999999777 78899999999999999986 666665 44455899
Q ss_pred EEeecCCCCEEEEECCce--EEEecc
Q 001416 319 CHPRAPNLDILTCVKDSH--IWAIEH 342 (1081)
Q Consensus 319 ~v~~spd~~lls~s~D~~--IWdi~~ 342 (1081)
++.+-++|++++|+.||+ ||..+.
T Consensus 264 sa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 264 SAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEeeCCCEEEeccCceEEEEEecc
Confidence 999999999999999985 666553
No 85
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=5.7e-20 Score=216.36 Aligned_cols=294 Identities=12% Similarity=0.071 Sum_probs=203.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEE
Q 001416 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1081)
Q Consensus 10 H~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~ 89 (1081)
|-..|+....++++..+++++.+.....|+...+..+..+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 44567777888888888899889888899865433221111
Q ss_pred EEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCC-CCCeEEEEEecCcEE-EEEecCCCc-----cccccccc
Q 001416 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRG-----RDIPKQEL 162 (1081)
Q Consensus 90 v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp-~g~~~l~s~s~d~~i-~wd~~t~~~-----~~~~~~~~ 162 (1081)
..++. ....+.+.+| .+.|.+++|+| +++ ++++++.|+.+ +||+.+... ..+..+.+
T Consensus 60 -------------~~G~~-~~~~~~l~GH-~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 60 -------------DYGKL-ASNPPILLGQ-EGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred -------------ccccC-CCCCceEeCC-CCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecC
Confidence 11111 0012345566 78899999999 665 77888877777 599876421 23445678
Q ss_pred CCCCeeEEEEeeccccCCC-CEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~-~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
|...|.+++| +|++ .+|++|+.|++|+|||+++++.+..+. +|...|.+++| +|++.+|++++.|++|++
T Consensus 124 H~~~V~~l~f-----~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~---spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 124 HTKKVGIVSF-----HPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEW---NLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred CCCcEEEEEe-----CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEE---ECCCCEEEEecCCCEEEE
Confidence 9999999999 4554 689999999999999999999888886 89999999994 789999999999999999
Q ss_pred EEcCCCCcccccccceeecccCCc-EEEEEEeeecCCCCEEEEEE----CCCeEEEEECCCCc-eeeEecCCCccccCCC
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGG-VVAVELSRVMGGSPQLITIG----ADKTLAIWDTVSFK-ELRRIKPVPKLACHSV 315 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~-V~~v~fsp~~~~~~~Lvsgs----~Dg~V~iWDl~t~~-~~~~~~~~~~~~~h~~ 315 (1081)
||+++++.+. ++.+|.+. +..+.|.+ ++..+++++ .|+.|++||+++.. ++.... ..+..
T Consensus 195 wD~rsg~~v~------tl~~H~~~~~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----~d~~~ 260 (493)
T PTZ00421 195 IDPRDGTIVS------SVEAHASAKSQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----LDQSS 260 (493)
T ss_pred EECCCCcEEE------EEecCCCCcceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----cCCCC
Confidence 9999887443 46778764 45678888 666777654 48999999998754 322220 12234
Q ss_pred CeEEEeecCCCCEE-EEE-CCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECC
Q 001416 316 ASWCHPRAPNLDIL-TCV-KDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNV 391 (1081)
Q Consensus 316 ~v~~v~~spd~~ll-s~s-~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~d 391 (1081)
.+....|+|++.++ +++ .|+ ++|++.... +..........++.+++|.|. . ++--.+
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---------------~~~~~~~~s~~~~~g~~~~pk-~---~~dv~~ 321 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---------------LTFCSSYSSVEPHKGLCMMPK-W---SLDTRK 321 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---------------eEEEeeccCCCCCcceEeccc-c---cccccc
Confidence 56667789999865 555 476 689998631 112222223336777888886 1 223333
Q ss_pred CeEEEEeCC
Q 001416 392 GVIISEFDP 400 (1081)
Q Consensus 392 G~Il~iwd~ 400 (1081)
.-|.+++.+
T Consensus 322 ~Ei~r~~~l 330 (493)
T PTZ00421 322 CEIARFYAL 330 (493)
T ss_pred eeeeEEEEe
Confidence 444455543
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=200.20 Aligned_cols=282 Identities=13% Similarity=0.164 Sum_probs=220.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEE
Q 001416 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1081)
Q Consensus 12 ~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~ 91 (1081)
..++++...|..+.++||+.|..+.++|..+++.+..++++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--------------------------------------- 260 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGH--------------------------------------- 260 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCc---------------------------------------
Confidence 56888999988789999999999999999887777777632
Q ss_pred EeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEE
Q 001416 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 92 f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~i 170 (1081)
.-.|+.+.|+|+.. .+++++.+..+ +|...... .......|..+|+.+
T Consensus 261 ----------------------------~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 261 ----------------------------TKKITSVKFHKDLD-TVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGL 309 (506)
T ss_pred ----------------------------ceEEEEEEeccchh-heeecCCcceEEeecccccc--Cccccccccccceee
Confidence 23367777888876 56666666666 58765543 444567899999999
Q ss_pred EEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecc-cccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCc
Q 001416 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~-h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~ 249 (1081)
.. +|+|.||+++++|++..+.|++++.++...... ..-.+++.+ ++|||.+|.+|..|+.|+|||+..+..
T Consensus 310 s~-----h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~---fHpDgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 310 SL-----HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA---FHPDGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ee-----ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee---EcCCceEEeccCCCceEEEEEcCCccc
Confidence 99 678999999999999999999999888776521 223477777 799999999999999999999999875
Q ss_pred ccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE
Q 001416 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1081)
Q Consensus 250 ~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll 329 (1081)
... +.+|+++|..++|+. +|.+|+++++|+.|++||++.-+..+++.. .....+.++.|.+.|.++
T Consensus 382 ~a~------Fpght~~vk~i~FsE---NGY~Lat~add~~V~lwDLRKl~n~kt~~l-----~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 382 VAK------FPGHTGPVKAISFSE---NGYWLATAADDGSVKLWDLRKLKNFKTIQL-----DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred ccc------CCCCCCceeEEEecc---CceEEEEEecCCeEEEEEehhhcccceeec-----cccccceeEEEcCCCCeE
Confidence 554 689999999999998 999999999999999999998887766622 122368899999999977
Q ss_pred -EEECCceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 330 -TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 330 -s~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
.+|.|.+||-....+. ....+..+..|.+ ..+++.|... ..++++++.|.. ++++.
T Consensus 448 ~~~g~~l~Vy~~~k~~k-----------~W~~~~~~~~~sg-~st~v~Fg~~-aq~l~s~smd~~-l~~~a 504 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTK-----------SWTEIKELADHSG-LSTGVRFGEH-AQYLASTSMDAI-LRLYA 504 (506)
T ss_pred EeecceeEEEEEecccc-----------cceeeehhhhccc-ccceeeeccc-ceEEeeccchhh-eEEee
Confidence 5677878877663210 0223334555665 7889999887 778899999888 46653
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-19 Score=188.53 Aligned_cols=287 Identities=15% Similarity=0.217 Sum_probs=221.6
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--CccceEEeccCCCeEEEeecCCCCCcee
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG--GVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~--~~~~v~~vs~~~~~lasg~~d~~~~~~~ 80 (1081)
.-+.|..-.++|.++.|+++|..|++++.|.+++|||..+++.++++... ..+.+++.+++...+.+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--------- 76 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--------- 76 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---------
Confidence 34567777899999999999999999999999999999999999998865 3445555566666666532
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~ 159 (1081)
. .|.+||..++.+++. ++.+.|| ...|.+++.+|-++ .+++++.|+.+ .||++..+...
T Consensus 77 -----k------~d~tIryLsl~dNky----lRYF~GH-~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg--- 136 (311)
T KOG1446|consen 77 -----K------EDDTIRYLSLHDNKY----LRYFPGH-KKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQG--- 136 (311)
T ss_pred -----C------CCCceEEEEeecCce----EEEcCCC-CceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCce---
Confidence 1 488999999999985 7788999 89999999999887 56666666555 69999754222
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC--eEEEEEe--cccccceEEEEEeeeCCCCCEEEEEeC
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGS 235 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~--~~~~~~~--~~h~~~V~~l~w~~~s~d~~~l~sgs~ 235 (1081)
..+...-..++| +|.|-++|++.....|++||++.. .+..++. .+.....+.+. |+|+|+.++.+..
T Consensus 137 -~l~~~~~pi~Af-----Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~---FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 137 -LLNLSGRPIAAF-----DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE---FSPDGKSILLSTN 207 (311)
T ss_pred -EEecCCCcceeE-----CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE---EcCCCCEEEEEeC
Confidence 223334456788 789999999998889999999853 3334442 23456777887 7999999999999
Q ss_pred CCcEEEEEcCCCCcccccccceeecccCCcE---EEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcccc
Q 001416 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGV---VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 236 Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V---~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
.+.+++.|.-+|..... +.++...- .+..|.| +++++++|+.||+|.+|++++++.+..+.. .
T Consensus 208 ~s~~~~lDAf~G~~~~t------fs~~~~~~~~~~~a~ftP---ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-----~ 273 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKST------FSGYPNAGNLPLSATFTP---DSKFVLSGSDDGTIHVWNLETGKKVAVLRG-----P 273 (311)
T ss_pred CCcEEEEEccCCcEeee------EeeccCCCCcceeEEECC---CCcEEEEecCCCcEEEEEcCCCcEeeEecC-----C
Confidence 99999999999885443 34443221 5678899 999999999999999999999999888732 1
Q ss_pred CCCCeEEEeecCCCCEE-EEECCceEEEec
Q 001416 313 HSVASWCHPRAPNLDIL-TCVKDSHIWAIE 341 (1081)
Q Consensus 313 h~~~v~~v~~spd~~ll-s~s~D~~IWdi~ 341 (1081)
+...+.|+.|.|.-.++ +++..-..|-..
T Consensus 274 ~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCCccccccCCceeeeeecCceEEEEecc
Confidence 67788899999987755 444444678665
No 88
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.3e-21 Score=192.13 Aligned_cols=263 Identities=19% Similarity=0.198 Sum_probs=194.6
Q ss_pred CccceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCccceEEeccCCCeEEEeecCCCCC
Q 001416 1 MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV---IYELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1081)
Q Consensus 1 ml~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~---i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~ 77 (1081)
|..++.-.+|.+-|..+...-.|+.|||++.|++|+|+..+.... +.++.
T Consensus 1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--------------------------- 53 (299)
T KOG1332|consen 1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--------------------------- 53 (299)
T ss_pred CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec---------------------------
Confidence 455667789999999999999999999999999999999875432 22222
Q ss_pred ceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccC-C-CCCeEEEEEecCcEE-EEEecCCCc
Q 001416 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-T-KGRHFLVICCVNKAI-FLDLVTMRG 154 (1081)
Q Consensus 78 ~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fs-p-~g~~~l~s~s~d~~i-~wd~~t~~~ 154 (1081)
+| .++|+.++|. | .|. +|++++.|+.+ +|...+++.
T Consensus 54 ---------------------------------------Gh-~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 54 ---------------------------------------GH-SGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred ---------------------------------------CC-CCCeeEEeecccccCc-EeeEeecCceEEEEecCCCch
Confidence 22 3444444443 3 354 88888866655 699888876
Q ss_pred ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC--eEEEEEecccccceEEEEEeeeCCCC-----
Q 001416 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGE----- 227 (1081)
Q Consensus 155 ~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~--~~~~~~~~~h~~~V~~l~w~~~s~d~----- 227 (1081)
.+......|...|++++|-| +..|-.|++++.||.|.|.+.++. -....+...|.-.|+++.|......|
T Consensus 93 ~k~~e~~~h~~SVNsV~wap---heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 93 TKAYEHAAHSASVNSVAWAP---HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred hhhhhhhhhcccceeecccc---cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc
Confidence 66666788999999999977 566888999999999999998642 33334445899999999985222223
Q ss_pred ------CEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecC-CCCEEEEEECCCeEEEEECCCCce
Q 001416 228 ------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-GSPQLITIGADKTLAIWDTVSFKE 300 (1081)
Q Consensus 228 ------~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~-~~~~Lvsgs~Dg~V~iWDl~t~~~ 300 (1081)
+.|+||+.|..|+||+.++++ +....+|.+|++.|..++|.|..+ ...+|+++|.||+|.||..+....
T Consensus 170 ~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 170 GPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred CcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999999874 333445899999999999999432 236899999999999998763222
Q ss_pred eeEecCCCccccCCCCeEEEeecCCCCEEEE-ECCc--eEEEec
Q 001416 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTC-VKDS--HIWAIE 341 (1081)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~v~~spd~~lls~-s~D~--~IWdi~ 341 (1081)
..+.+. +......++.+.||+.|.+|+. ++|+ ++|.-+
T Consensus 246 ~wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 222211 2334568999999999999964 4555 467654
No 89
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=7.5e-20 Score=216.08 Aligned_cols=242 Identities=10% Similarity=0.117 Sum_probs=173.8
Q ss_pred ceeeCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE-EEEEecCCccceEEeccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQV-IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~-g~~Lasgs~dg~I~IWd~~t~~~-i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~ 81 (1081)
+..+.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++.. +..+.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------------------------- 115 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------------------------- 115 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-------------------------------
Confidence 4678999999999999997 78999999999999999976421 11000
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~ 160 (1081)
. ....+.+| ...|.+++|+|++..++++++.|+.+ +||+.+++. ....
T Consensus 116 ---~-------------------------p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i 164 (568)
T PTZ00420 116 ---D-------------------------PQCILKGH-KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQI 164 (568)
T ss_pred ---c-------------------------ceEEeecC-CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEE
Confidence 0 01112233 56789999999998777887776666 699988652 2222
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEe--eeCCCCCEEEEEeCCC-
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--MASSGEALLVSGGSDG- 237 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~--~~s~d~~~l~sgs~Dg- 237 (1081)
.+...|.+++| +|+|.+|++++.|+.|+|||+++++.+..+. +|.+.+.+..++ .+++++.++++++.|+
T Consensus 165 -~~~~~V~Slsw-----spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 165 -NMPKKLSSLKW-----NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred -ecCCcEEEEEE-----CCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 25578999999 7899999999999999999999999998887 898876554421 1357888999988774
Q ss_pred ---cEEEEEcCCC-CcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccC
Q 001416 238 ---LLILWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1081)
Q Consensus 238 ---~V~vWd~~~~-~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h 313 (1081)
+|++||++.. +.+.. ..+..+.+.+.. .|.+ +++.++++|+.|++|++|++..+. +..+.. -.+
T Consensus 238 ~~R~VkLWDlr~~~~pl~~----~~ld~~~~~L~p-~~D~--~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~----~~s 305 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVT----MSIDNASAPLIP-HYDE--STGLIYLIGKGDGNCRYYQHSLGS-IRKVNE----YKS 305 (568)
T ss_pred CccEEEEEECCCCCCceEE----EEecCCccceEE-eeeC--CCCCEEEEEECCCeEEEEEccCCc-EEeecc----ccc
Confidence 7999999863 32221 122333333322 3444 378899999999999999998764 333321 225
Q ss_pred CCCeEEEeecCCC
Q 001416 314 SVASWCHPRAPNL 326 (1081)
Q Consensus 314 ~~~v~~v~~spd~ 326 (1081)
..+..+++|.|..
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 5677788999863
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.6e-21 Score=210.41 Aligned_cols=241 Identities=18% Similarity=0.243 Sum_probs=196.4
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~ 199 (1081)
.+.|.+++|+|..++-+++.+.-++-+|+..+.. ....+.--.+.+.+++| ..||.+++.|...|.|+++|.+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~--~~k~~srFk~~v~s~~f-----R~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS--VRKTFSRFKDVVYSVDF-----RSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhh--hhhhHHhhccceeEEEe-----ecCCeEEEccCCcCcEEEeccc
Confidence 4679999999988888888888888889887753 22334445678999999 6899999999999999999987
Q ss_pred CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 200 ~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
+...++.+. +|+.+|..+. +.+.++..|++|+.|+.+++||+.+... ...+.+|++.|.|.+|+| .++.
T Consensus 99 ~r~iLR~~~-ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v------~~~l~~htDYVR~g~~~~--~~~h 167 (487)
T KOG0310|consen 99 SRVILRQLY-AHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYV------QAELSGHTDYVRCGDISP--ANDH 167 (487)
T ss_pred cHHHHHHHh-hccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEE------EEEecCCcceeEeecccc--CCCe
Confidence 766777776 9999999997 2566778899999999999999998763 335899999999999999 4778
Q ss_pred EEEEEECCCeEEEEECCCC-ceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECC-ceEEEeccCCcccccccccccC
Q 001416 280 QLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKD-SHIWAIEHPTYSALTRPLCELS 356 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~-~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D-~~IWdi~~~~~~~~~~~~~~~~ 356 (1081)
+++|||.||+|++||+++. ..+..+ .|..+|-.+.+-|.|.+| ++|+. .+|||+..+
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G------------- 227 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG------------- 227 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------------
Confidence 9999999999999999887 444443 788899999999998866 55544 599999853
Q ss_pred CCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 357 ~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
+..+..+..|.+ .|+|+.+..+ +..|.+|+-||.| ++||+..
T Consensus 228 -~qll~~~~~H~K-tVTcL~l~s~-~~rLlS~sLD~~V-KVfd~t~ 269 (487)
T KOG0310|consen 228 -GQLLTSMFNHNK-TVTCLRLASD-STRLLSGSLDRHV-KVFDTTN 269 (487)
T ss_pred -ceehhhhhcccc-eEEEEEeecC-CceEeecccccce-EEEEccc
Confidence 222334445788 9999999998 4666999999997 9999553
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.1e-21 Score=193.36 Aligned_cols=242 Identities=15% Similarity=0.252 Sum_probs=194.5
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CcEEEEEecCCccceEEe--cc-CCCeEEEeecCCCCCceeeecCC
Q 001416 11 NDKIVKIQLHPTH-PWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLV--GA-KLEKLAEGELEHKGKPTEAMRGG 85 (1081)
Q Consensus 11 ~~~V~~lafsp~g-~~Lasgs~dg~I~IWd~~t-~~~i~~~~~~~~~~v~~v--s~-~~~~lasg~~d~~~~~~~~l~g~ 85 (1081)
.+.+..++|+++. +.+++++.||+++|||... ..++..++ .|...+..+ ++ ..+.+.+++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsS-------------- 124 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSS-------------- 124 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeec--------------
Confidence 5788999999975 5899999999999999642 34566666 455666666 32 233344432
Q ss_pred ceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCC
Q 001416 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDN 164 (1081)
Q Consensus 86 ~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~ 164 (1081)
-|++|++|+...++. +.++.+| ...|....|+|....++++++.|+..+ ||++... +.+. ++.|.
T Consensus 125 -------WD~TiKLW~~~r~~S----v~Tf~gh-~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~-i~ah~ 190 (311)
T KOG0277|consen 125 -------WDGTIKLWDPNRPNS----VQTFNGH-NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMS-IEAHN 190 (311)
T ss_pred -------cCCceEeecCCCCcc----eEeecCC-ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-ceeE-EEecc
Confidence 499999999998886 5567887 889999999999888999999988885 9988763 3333 78899
Q ss_pred CCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
..|.|+.|+ ..+...++||+.|+.|+.||+++. .++..+. +|.-.|..++| .+....+|+|++.|-++||||
T Consensus 191 ~Eil~cdw~----ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~--Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 191 SEILCCDWS----KYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKF--SPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ceeEeeccc----ccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEec--CcchhhHhhhccccceEEecc
Confidence 999999996 357778999999999999999864 5566775 99999999994 455567999999999999999
Q ss_pred cCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEEC
Q 001416 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1081)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl 295 (1081)
...+....+ +...|+.-|..++|++. +..++++++.|..+.||+.
T Consensus 264 ~~~~ds~~e-----~~~~HtEFv~g~Dws~~--~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIE-----TVDHHTEFVCGLDWSLF--DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhh-----hhhccceEEeccccccc--cCceeeecccccceeeecc
Confidence 986553322 35779999999999994 8889999999999999984
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3.8e-20 Score=190.03 Aligned_cols=276 Identities=12% Similarity=0.106 Sum_probs=201.9
Q ss_pred CCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCce
Q 001416 10 TNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1081)
Q Consensus 10 H~~~V~~lafsp-~g~~Lasgs~dg~I~IWd~~t-~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V 87 (1081)
-.+.|.+|+||| ...++++++.||+||+|+++. |..+..
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--------------------------------------- 66 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--------------------------------------- 66 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch---------------------------------------
Confidence 457899999999 455777999999999999875 221111
Q ss_pred EEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCe
Q 001416 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL 167 (1081)
Q Consensus 88 ~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I 167 (1081)
....| .++|.+++|+.||..++++++++...+||+.+++ +.....|..+|
T Consensus 67 --------------------------a~~~~-~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pv 116 (347)
T KOG0647|consen 67 --------------------------AQQSH-DGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPV 116 (347)
T ss_pred --------------------------hhhcc-CCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccce
Confidence 11112 5678888899999878888888888889999974 44567899999
Q ss_pred eEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 001416 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1081)
Q Consensus 168 ~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~ 247 (1081)
.++.|.+ .+..+.|+|||.|.+|+.||.+...++.++. -...++++. -...+++.+..++.|.+++++++
T Consensus 117 kt~~wv~---~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~D-----v~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 117 KTCHWVP---GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAAD-----VLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eEEEEec---CCCcceeEecccccceeecccCCCCeeeeee--ccceeeehh-----ccCceeEEEecCCcEEEEEcCCC
Confidence 9999976 3445689999999999999999988888875 556777775 23458888999999999999876
Q ss_pred CcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC---------CeE
Q 001416 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV---------ASW 318 (1081)
Q Consensus 248 ~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~---------~v~ 318 (1081)
.....- .-..-+-.+.||+..+ +....+.|+-.|.+-|..+..+.+...+ +++.|.. .|+
T Consensus 187 ~te~k~----~~SpLk~Q~R~va~f~---d~~~~alGsiEGrv~iq~id~~~~~~nF----tFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 187 PTEFKR----IESPLKWQTRCVACFQ---DKDGFALGSIEGRVAIQYIDDPNPKDNF----TFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred cchhhh----hcCcccceeeEEEEEe---cCCceEeeeecceEEEEecCCCCccCce----eEEEeccCCCCCCceEEec
Confidence 532210 0011223478999988 7777899999999999999876443322 2234431 577
Q ss_pred EEeecCCCC-EEEEECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECC
Q 001416 319 CHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNV 391 (1081)
Q Consensus 319 ~v~~spd~~-lls~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~d 391 (1081)
+++|+|... ++++|.||+ .||-+.. ..+.+.+.+.. +|+|.+|+.+|..+..+.+.|
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar---------------~kLk~s~~~~q-pItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDAR---------------TKLKTSETHPQ-PITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhh---------------hhhhccCcCCC-ccceeEecCCCCEEEEEeecc
Confidence 899999655 568999996 6998752 22233445666 999999999966654444443
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=3.7e-20 Score=207.42 Aligned_cols=340 Identities=18% Similarity=0.178 Sum_probs=237.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--cCCccceEEe--------ccCCCeEEEeecCCCCCceeeec
Q 001416 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELK--AGGVDQRRLV--------GAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 14 V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~--~~~~~~v~~v--------s~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
.-++.|+|+..+|...-.|..++|||++.-+.+.... ..|...++.+ ++...+|.-+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~------------- 393 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG------------- 393 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-------------
Confidence 4578899999999999999999999998654433211 1344444444 2222222111
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccc---------cc---------ccc--------------ccCCCCCeeecccCCC
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAA---------EA---------PTA--------------VSNVTSGFASPPPSTK 131 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~---------~~---------~~~--------------~~h~~~~V~sl~fsp~ 131 (1081)
.+-.+-.|++||+|++..+..... .. +.. .-.....+++++.+|+
T Consensus 394 ---cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 394 ---CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred ---ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 011112699999999976321110 00 000 0011457999999999
Q ss_pred CCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC-CCeEEEEEec
Q 001416 132 GRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWKLVRRYTG 209 (1081)
Q Consensus 132 g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~-~~~~~~~~~~ 209 (1081)
|+ .+++|...+.+ +|++...+ .....+.|...|.|+.|+.. .-..++|++++.|.-|.++|.. +..+++++.
T Consensus 471 gq-hLAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p--~~~~kLLASasrdRlIHV~Dv~rny~l~qtld- 544 (1080)
T KOG1408|consen 471 GQ-HLASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFP--VLTNKLLASASRDRLIHVYDVKRNYDLVQTLD- 544 (1080)
T ss_pred cc-eecccCccCceEEEEehhhh--hhhheecccceeEEEeecCc--hhhhHhhhhccCCceEEEEecccccchhhhhc-
Confidence 98 66777666655 59998753 55568899999999999521 1235679999999999999996 456667776
Q ss_pred ccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCe
Q 001416 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1081)
Q Consensus 210 ~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~ 289 (1081)
+|...|+++. |..+--...+++++.|+.|. |+......-...-+..+-.-....+..++..| ...++++++.|+.
T Consensus 545 ~HSssITsvK-Fa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp---~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 545 GHSSSITSVK-FACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP---TSKLVVTVCQDRN 619 (1080)
T ss_pred ccccceeEEE-EeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC---CcceEEEEecccc
Confidence 9999999999 32333347899999999874 45443211111101111111234578999999 8899999999999
Q ss_pred EEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEE-CCc--eEEEeccCCcccccccccccCCCCCCeEEcc
Q 001416 290 LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAH 366 (1081)
Q Consensus 290 V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s-~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (1081)
|+|||+++++..+.|+. -.+|.+....+...|.|.++++| .|. .++|+-+ +.++..+.+
T Consensus 620 irif~i~sgKq~k~FKg---s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s---------------gEcvA~m~G 681 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKG---SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS---------------GECVAQMTG 681 (1080)
T ss_pred eEEEeccccceeeeecc---cccCCCceEEEEECCCccEEEEeecCCceEEEEecc---------------chhhhhhcC
Confidence 99999999999998854 45677777799999999999655 343 4788876 566667788
Q ss_pred CCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 367 HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 367 ~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
|.. .|+.+.|.+|-.++ ++.+.||.| ++|.+.
T Consensus 682 HsE-~VTG~kF~nDCkHl-ISvsgDgCI-FvW~lp 713 (1080)
T KOG1408|consen 682 HSE-AVTGVKFLNDCKHL-ISVSGDGCI-FVWKLP 713 (1080)
T ss_pred cch-heeeeeecccchhh-eeecCCceE-EEEECc
Confidence 988 99999999996655 888899997 999754
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=2.8e-19 Score=205.00 Aligned_cols=332 Identities=14% Similarity=0.150 Sum_probs=240.3
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~ 81 (1081)
+.+|+++.++|+++.=+|--..+|.|..+|+|.|+|+..++.+.+|+.. ...+..+ ..||+.+...+
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p~las~---------- 263 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNPLLASG---------- 263 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCeeEEec----------
Confidence 5789999999999999999999999999999999999999999999943 3444444 33454433321
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEe-cCcEEEE--EecCCCccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFL--DLVTMRGRDIP 158 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s-~d~~i~w--d~~t~~~~~~~ 158 (1081)
. ..|.+-+||++..+. ......-+.+.|....|-|..+ ++++.+ |+...+| |...+..+.+.
T Consensus 264 ---~-------~~G~m~~wDLe~kkl----~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 264 ---R-------SNGDMAFWDLEKKKL----INVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred ---c-------CCceEEEEEcCCCee----eeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchhee
Confidence 1 469999999998774 2223322266788888988777 555555 5444456 54444345555
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC---------------------------------------
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI--------------------------------------- 199 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~--------------------------------------- 199 (1081)
...+|..+..|+.|. ..++..+.+++.|++.+.+++.
T Consensus 329 ~R~GHs~Pp~~irfy----~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFY----GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred eccCCCCCchheeee----ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 668899999999996 3567777888877777666542
Q ss_pred --------------------------CCeE-EEEEecccc------cceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 200 --------------------------SWKL-VRRYTGGHK------GSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 200 --------------------------~~~~-~~~~~~~h~------~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
+... ...+ .+. ..+++++ .++.|++.+.|+..|+|-+|++++
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L--~~~~~~~~~~~~~av~---vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL--DPKRFKKDDINATAVC---VSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEe--cCccccccCcceEEEE---EeccCceEEEeccCCeEEEEEccc
Confidence 1111 0011 122 4456665 688999999999999999999999
Q ss_pred CCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCC
Q 001416 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~ 326 (1081)
|-....+. .-..|.++|++++... -++.+++++.||.++.||..+...+..+.. ...+.++.+|...
T Consensus 480 Gi~r~sf~---~~~ah~~~V~gla~D~---~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 480 GIHRKSFG---DSPAHKGEVTGLAVDG---TNRLLVSAGADGILKFWDFKKKVLKKSLRL-------GSSITGIVYHRVS 546 (910)
T ss_pred Ceeecccc---cCccccCceeEEEecC---CCceEEEccCcceEEEEecCCcceeeeecc-------CCCcceeeeeehh
Confidence 86544321 1258999999999976 778999999999999999998876665522 2345567777777
Q ss_pred CEEE-EECC--ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 327 DILT-CVKD--SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 327 ~lls-~s~D--~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
.+++ +.+| ++++|..+ .+-+..|.+|++ +|+.++|||+ +..|++++.|++| ++||+.
T Consensus 547 ~l~a~~~ddf~I~vvD~~t---------------~kvvR~f~gh~n-ritd~~FS~D-grWlisasmD~tI-r~wDlp 606 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVT---------------RKVVREFWGHGN-RITDMTFSPD-GRWLISASMDSTI-RTWDLP 606 (910)
T ss_pred hhhhhhcCceeEEEEEchh---------------hhhhHHhhcccc-ceeeeEeCCC-CcEEEEeecCCcE-EEEecc
Confidence 6664 4444 36788764 333456778999 9999999999 5556999999997 999965
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.2e-21 Score=211.67 Aligned_cols=269 Identities=17% Similarity=0.276 Sum_probs=208.6
Q ss_pred eCCeEEEEEcCCCcccc--ccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeE
Q 001416 93 YDDDVRFWQLWRNRAAA--AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~--~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ 169 (1081)
.||.|++|+........ ......+.| .++|+.+...-+++ .+++++.|..+ +|+...+...+...+..|.++|.|
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~H-sDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkc 122 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHH-SDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKC 122 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhh-HhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhhhhcccchhee
Confidence 59999999997665421 122333444 88999999988887 55566666655 699887655677888999999999
Q ss_pred EEEeeccccCCCCEEEEEECCCeEEEEEcCCC--eEEEEE--------ecccccceEEEEEeeeCCCCCEEEEEeCCCcE
Q 001416 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRY--------TGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 170 ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~--~~~~~~--------~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V 239 (1081)
+++. .++...+|+|+-|+.|.+||++++ +.+.++ ..|+..+|++++ ..+.|..+++|+..+.+
T Consensus 123 la~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA---~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 123 LAYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA---MNQTGTIIVSGGTEKDL 195 (735)
T ss_pred eeec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee---cCCcceEEEecCcccce
Confidence 9994 367889999999999999999876 233222 238899999998 58888999999999999
Q ss_pred EEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEE
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 240 ~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
++||.++.+. ...+.||+..|..+-.++ ||..++|+|.||+|++||+...+|+.++ ..|...||+
T Consensus 196 r~wDprt~~k------imkLrGHTdNVr~ll~~d---DGt~~ls~sSDgtIrlWdLgqQrCl~T~------~vH~e~VWa 260 (735)
T KOG0308|consen 196 RLWDPRTCKK------IMKLRGHTDNVRVLLVND---DGTRLLSASSDGTIRLWDLGQQRCLATY------IVHKEGVWA 260 (735)
T ss_pred EEeccccccc------eeeeeccccceEEEEEcC---CCCeEeecCCCceEEeeeccccceeeeE------EeccCceEE
Confidence 9999999874 345789999999999998 9999999999999999999999999886 789999999
Q ss_pred EeecCCCCEE-EEECCceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 320 HPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 320 v~~spd~~ll-s~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
+..+|+-..+ +|+.|+.|+..+...+... ++-.....+|..+..+.. .+-+-+++.|+.| +-|
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~--------------tlick~daPv~~l~~~~~-~~~~WvtTtds~I-~rW 324 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKS--------------TLICKEDAPVLKLHLHEH-DNSVWVTTTDSSI-KRW 324 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhh--------------eEeecCCCchhhhhhccc-cCCceeeeccccc-eec
Confidence 9999998866 8889998876553222111 111122236666666644 2234778889997 888
Q ss_pred CCC
Q 001416 399 DPR 401 (1081)
Q Consensus 399 d~~ 401 (1081)
...
T Consensus 325 ~~~ 327 (735)
T KOG0308|consen 325 KLE 327 (735)
T ss_pred CCc
Confidence 744
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=2e-20 Score=202.44 Aligned_cols=262 Identities=13% Similarity=0.204 Sum_probs=193.7
Q ss_pred eeeCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEE----------EEecCCccceEEe-ccCCCeEEEeec
Q 001416 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIY----------ELKAGGVDQRRLV-GAKLEKLAEGEL 72 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~i~----------~~~~~~~~~v~~v-s~~~~~lasg~~ 72 (1081)
..---|.+.|+.+.+-|..+ .+||++.++.|.|||+.+..-.. ++..|...+.... ++..
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~-------- 189 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ-------- 189 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc--------
Confidence 34457999999999999877 77778889999999987543222 2222211111111 1110
Q ss_pred CCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccc---cccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEE
Q 001416 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA---AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLD 148 (1081)
Q Consensus 73 d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~---~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd 148 (1081)
...++.++ .|++|++||++..... ......+.+| ...|..++|++....+|+++++|+.+ +||
T Consensus 190 -----~g~Lls~~-------~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 190 -----EGTLLSGS-------DDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred -----ceeEeecc-------CCCcEEEEeccccccCCccccceEEeecC-CcceehhhccccchhhheeecCCCeEEEEE
Confidence 11112223 4999999999876542 2233445566 88999999999988899999998887 599
Q ss_pred ecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEecccccceEEEEEeeeCCCC
Q 001416 149 LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGE 227 (1081)
Q Consensus 149 ~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~~~h~~~V~~l~w~~~s~d~ 227 (1081)
.++...+......+|...|.|++|+| .++..||+||.|++|++||+++. +++.++. +|...|.++.| .+...
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp----~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~W--SPh~e 329 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNP----FNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEW--SPHNE 329 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCC----CCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEe--CCCCC
Confidence 99643445556788999999999976 45778999999999999999864 5677886 99999999997 46667
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccc--------ccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECC
Q 001416 228 ALLVSGGSDGLLILWSADHGQDSR--------ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1081)
Q Consensus 228 ~~l~sgs~Dg~V~vWd~~~~~~~~--------~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~ 296 (1081)
..|+|++.|+.+.+||+..-...+ -....+.-.||+..|..+.|+| .....++|.+.|+.+.||++.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp--~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP--NEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC--CCCeEEEEecCCceEEEeecc
Confidence 789999999999999997533221 0112356679999999999999 356678899999999999975
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=6.2e-20 Score=185.30 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=199.4
Q ss_pred ccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 114 ~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
.+.+| ..+++.+.++.+|. +|.+++.|... +|-..++ ..+-...+|.+.|+|++. +-+.+.+++|+.|.+
T Consensus 5 ~l~GH-ERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Di-----d~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 5 LLQGH-ERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDI-----DWDSKHLITGSADQT 75 (327)
T ss_pred ccccC-ccccceEEecCCCc-EEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEe-----cCCcceeeeccccce
Confidence 34566 88899999999998 77777777766 6755444 356668899999999999 678899999999999
Q ss_pred EEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCC-----CcEEEEEcCCCCc-ccccccceeecccCCcE
Q 001416 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADHGQD-SRELVPKLSLKAHDGGV 266 (1081)
Q Consensus 193 I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~D-----g~V~vWd~~~~~~-~~~~~~~~~l~~h~~~V 266 (1081)
+++||+++|+++.++. ...+|..+. |+++|++++....+ +.|.++|++.... +..-.|...+..+.+.+
T Consensus 76 ~kLWDv~tGk~la~~k--~~~~Vk~~~---F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 76 AKLWDVETGKQLATWK--TNSPVKRVD---FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred eEEEEcCCCcEEEEee--cCCeeEEEe---eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 9999999999999985 778899998 69999888876543 5799999985431 11113566677888999
Q ss_pred EEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCE-EEEECCc--eEEEeccC
Q 001416 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI-LTCVKDS--HIWAIEHP 343 (1081)
Q Consensus 267 ~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~l-ls~s~D~--~IWdi~~~ 343 (1081)
+.+-|.| -+++|++|..||.|.+||.++++.+.. ....|+..|+.+.++||..+ |++|.|. ++||..+.
T Consensus 151 t~a~Wg~---l~~~ii~Ghe~G~is~~da~~g~~~v~-----s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 151 TSALWGP---LGETIIAGHEDGSISIYDARTGKELVD-----SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred eeeeecc---cCCEEEEecCCCcEEEEEcccCceeee-----chhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 9999999 899999999999999999999876543 34778889999999999995 5888885 69998753
Q ss_pred Cc-------ccc----ccccc------------ccCC-----C------------CCCeEEccCCCccEEEEEEeCCCCe
Q 001416 344 TY-------SAL----TRPLC------------ELSS-----L------------VPPQVLAHHKKLRVYCMVAHSLQPH 383 (1081)
Q Consensus 344 ~~-------~~~----~~~~~------------~~~~-----~------------~~~~~l~~~~~~~V~~l~~sp~~~~ 383 (1081)
.. ++. ..++. ++.. + ..+....+|-. +|++++|||+ +.
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPd-Gk 300 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPD-GK 300 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCC-Cc
Confidence 21 000 00100 0000 0 01345667777 9999999999 55
Q ss_pred EEEEEECCCeEEEEe
Q 001416 384 LVATGTNVGVIISEF 398 (1081)
Q Consensus 384 llatgs~dG~Il~iw 398 (1081)
..++|+.||.| ++.
T Consensus 301 sYsSGGEDG~V-R~h 314 (327)
T KOG0643|consen 301 SYSSGGEDGYV-RLH 314 (327)
T ss_pred ccccCCCCceE-EEE
Confidence 56999999997 664
No 98
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=6.4e-20 Score=206.42 Aligned_cols=347 Identities=14% Similarity=0.156 Sum_probs=248.2
Q ss_pred cceeeCCCCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEE------------------------------EE
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIY------------------------------EL 49 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~---~Lasgs~dg~I~IWd~~t~~~i~------------------------------~~ 49 (1081)
+...+.||.+.|++++|...+. +|+|+++|..||||.+.-+.... .+
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 4677899999999999987654 99999999999999875333111 11
Q ss_pred ecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCcccc---ccccccccCCCCCee
Q 001416 50 KAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAA---AEAPTAVSNVTSGFA 124 (1081)
Q Consensus 50 ~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~---~~~~~~~~h~~~~V~ 124 (1081)
..+|.+.+..+ .|.+..|.+++ .|.++-+|...+....- ..+-. .++....+.
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSAS---------------------aDksmiiW~pd~~tGiWv~~vRlGe-~gg~a~GF~ 320 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSAS---------------------ADKSMIIWKPDENTGIWVDVVRLGE-VGGSAGGFW 320 (764)
T ss_pred hcCcccceEEEEEccchhhheecc---------------------cCcceEEEecCCccceEEEEEEeec-cccccccee
Confidence 12455555555 45554444433 68889999876653110 01111 123355688
Q ss_pred ecccCCCCCeEEEEEecCcEEEEEecC-CCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC----
Q 001416 125 SPPPSTKGRHFLVICCVNKAIFLDLVT-MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI---- 199 (1081)
Q Consensus 125 sl~fsp~g~~~l~s~s~d~~i~wd~~t-~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~---- 199 (1081)
+..|+|++..+++-+..++...|-.+. ......+...+|-+.|+.++| +|.|.++++.+.|.+-|++-.-
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W-----~psGeflLsvs~DQTTRlFa~wg~q~ 395 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDW-----DPSGEFLLSVSLDQTTRLFARWGRQQ 395 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeee-----cCCCCEEEEeccccceeeeccccccc
Confidence 999999998777778888888896222 222344557899999999999 7889999999999999998653
Q ss_pred CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC---------------------------------
Q 001416 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH--------------------------------- 246 (1081)
Q Consensus 200 ~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~--------------------------------- 246 (1081)
++..+.+-+ -|...++|++ +-+....|++|.....+|+|+...
T Consensus 396 ~wHEiaRPQ-iHGyDl~c~~---~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 396 EWHEIARPQ-IHGYDLTCLS---FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ceeeecccc-cccccceeee---hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 223333333 6889999998 234367899999999999998731
Q ss_pred ----------CCc----c-----------------------cccccceeecccCCcEEEEEEeeecCCCCEEEEEECC--
Q 001416 247 ----------GQD----S-----------------------RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-- 287 (1081)
Q Consensus 247 ----------~~~----~-----------------------~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D-- 287 (1081)
+.. . ..+.....+.||.-.|.+++.+| ++++++|++..
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~---~gnliASaCKS~~ 548 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP---TGNLIASACKSSL 548 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC---CCCEEeehhhhCC
Confidence 000 0 00111333568999999999999 99999999864
Q ss_pred ---CeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCC
Q 001416 288 ---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPP 361 (1081)
Q Consensus 288 ---g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~ 361 (1081)
..|++|+..+....+.+ .+|+-.|+.++||||+++| +.|.|. .+|..... .....+ .
T Consensus 549 ~ehAvI~lw~t~~W~~~~~L------~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~-~~~e~~----------f 611 (764)
T KOG1063|consen 549 KEHAVIRLWNTANWLQVQEL------EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED-IKDEFR----------F 611 (764)
T ss_pred ccceEEEEEeccchhhhhee------cccceEEEEEEECCCCcEEEEeecCceEEeeeeecc-cchhhh----------h
Confidence 36999999988877654 8999999999999999966 889886 47887542 111111 1
Q ss_pred eEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 362 ~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
.....|.. -||...|+|+ ...++|++.|..| ++|.....
T Consensus 612 a~~k~HtR-IIWdcsW~pd-e~~FaTaSRDK~V-kVW~~~~~ 650 (764)
T KOG1063|consen 612 ACLKAHTR-IIWDCSWSPD-EKYFATASRDKKV-KVWEEPDL 650 (764)
T ss_pred ccccccce-EEEEcccCcc-cceeEEecCCceE-EEEeccCc
Confidence 23556887 8999999999 5557999999997 89986543
No 99
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.1e-20 Score=198.58 Aligned_cols=289 Identities=19% Similarity=0.265 Sum_probs=213.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceE
Q 001416 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR--QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1081)
Q Consensus 11 ~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~--~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~ 88 (1081)
.++|++|.|||..+.|++|+.||+++|+.+... ..+.++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-------------------------------------- 254 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-------------------------------------- 254 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee--------------------------------------
Confidence 478999999999999999999999999987521 1111111
Q ss_pred EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCC-CC
Q 001416 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KS 166 (1081)
Q Consensus 89 ~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~-~~ 166 (1081)
| ...+|.+.+|.|+|...+++++....+ .||+.+.+...+....++. ..
T Consensus 255 ---l--------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 255 ---L--------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ---e--------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 0 045678888999998555555555554 6999988766655555544 45
Q ss_pred eeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 167 I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
+...+. +|++++|+..+..|.|.+....+++.+..+. -.+.|..+. ++.+++.|++++.+|.|.+||++.
T Consensus 306 ~e~FeV-----Shd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~---fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 306 MERFEV-----SHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFT---FSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hheeEe-----cCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEE---EecCCcEEEEEcCCceEEEEecCC
Confidence 677777 7899999999999999999999999998885 678899998 368889999999999999999999
Q ss_pred CCcccccccceeecccCCcE--EEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 247 GQDSRELVPKLSLKAHDGGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V--~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
..++..+. -.+.| ++++.++ ++.||++||+.|.|.|||.++.-.-..-+|+..+..-...|+++.|+|
T Consensus 376 ~~~~~rf~-------D~G~v~gts~~~S~---ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 376 NSCLHRFV-------DDGSVHGTSLCISL---NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred cceEEEEe-------ecCccceeeeeecC---CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 87766542 12333 5666667 889999999999999999876554444456666666777899999999
Q ss_pred CCCEEE-EECC--c--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 325 NLDILT-CVKD--S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 325 d~~lls-~s~D--~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
|.++|+ ||.- . |+-.+.+-+. +.. -| + .......|+||+|+|.++ ++|.|...|.+ .+|.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TV------FsN----fP--~-~n~~vg~vtc~aFSP~sG-~lAvGNe~grv-~l~k 510 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTV------FSN----FP--T-SNTKVGHVTCMAFSPNSG-YLAVGNEAGRV-HLFK 510 (514)
T ss_pred chhhhhhhhhccccceEEEeccceee------ecc----CC--C-CCCcccceEEEEecCCCc-eEEeecCCCce-eeEe
Confidence 999884 4432 2 4544443110 000 00 0 122334899999999855 56999999996 8997
Q ss_pred CC
Q 001416 400 PR 401 (1081)
Q Consensus 400 ~~ 401 (1081)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 43
No 100
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=8.7e-20 Score=183.77 Aligned_cols=234 Identities=16% Similarity=0.232 Sum_probs=196.0
Q ss_pred eeCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 6 AFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
...||++.|-.+.|+|..+ .+++++.|.+|++||..+++++........+....-+|++++++.+.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~------------- 125 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN------------- 125 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-------------
Confidence 4679999999999999765 99999999999999999999999888554444344499999999875
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~ 164 (1081)
.|..|.+.|..+.+.... .+....+.-++|+.++..++++.+.+.+-+..+.. ++.+..+..|.
T Consensus 126 --------kdD~it~id~r~~~~~~~------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkpv~si~AH~ 189 (313)
T KOG1407|consen 126 --------KDDRITFIDARTYKIVNE------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--LKPVQSIKAHP 189 (313)
T ss_pred --------CcccEEEEEecccceeeh------hcccceeeeeeecCCCCEEEEecCCceEEEEeccc--cccccccccCC
Confidence 477888888877664222 12234466788888888788888888877766654 46788889999
Q ss_pred CCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
....||+| +|+|+++|+|+.|..+.+||+...-|++.+. .+.-+|..+. |+-+|++|++||+|..|-|=++
T Consensus 190 snCicI~f-----~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlS---FS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 190 SNCICIEF-----DPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLS---FSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cceEEEEE-----CCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEE---eccCcceeeccCccceEEeEec
Confidence 99999999 7999999999999999999999999999997 8999999998 6999999999999999999999
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D 287 (1081)
.+|..+.+ -.|+++-..|+|+| ..++|+-+++|
T Consensus 261 etGd~~~e-------I~~~~~t~tVAWHP---k~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETGDRVWE-------IPCEGPTFTVAWHP---KRPLLAYACDD 293 (313)
T ss_pred ccCCeEEE-------eeccCCceeEEecC---CCceeeEEecC
Confidence 99987665 34778899999999 88999988775
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=8.1e-20 Score=216.51 Aligned_cols=255 Identities=19% Similarity=0.216 Sum_probs=195.0
Q ss_pred cccccCCCCCeeecccCCCCCeEEEEEe---cCcEEEEEecCC----C------cccccccccCCCCeeEEEEeeccccC
Q 001416 113 PTAVSNVTSGFASPPPSTKGRHFLVICC---VNKAIFLDLVTM----R------GRDIPKQELDNKSLVCMEFLSRSAVG 179 (1081)
Q Consensus 113 ~~~~~h~~~~V~sl~fsp~g~~~l~s~s---~d~~i~wd~~t~----~------~~~~~~~~~~~~~I~~ia~~p~~~sp 179 (1081)
+....|....|.++..+|+|. .+++|+ +++.++|+...- + .+.+.....|...|+|+.| +|
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-----S~ 79 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-----SP 79 (942)
T ss_pred ccccccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE-----CC
Confidence 345566677799999999998 555555 556667865321 0 1233445678899999999 89
Q ss_pred CCCEEEEEECCCeEEEEEcC------------------CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 180 DVPLVAFGSSDGVIRVLSMI------------------SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 180 ~~~~l~sgs~Dg~I~lwd~~------------------~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
||.+||+||+|+.|.+|... .|+++..+. +|...|..++| +|++.+|+++|.|++|.+
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~W---sp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNW---SPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceecc---CCCccEEEEecccceEEE
Confidence 99999999999999999876 235677776 99999999997 889999999999999999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEe
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~ 321 (1081)
||..+.+.+. .+.+|.+.|-.+.|.| -|+||+|-++|++|+||++.+....+.+.....-..-+.....+.
T Consensus 156 wn~~tF~~~~------vl~~H~s~VKGvs~DP---~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTFELLK------VLRGHQSLVKGVSWDP---IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccceeee------eeecccccccceEECC---ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 9998875443 4799999999999999 999999999999999999888777777644333233344677999
Q ss_pred ecCCCCEEEEEC--Cc-----eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC------C------C
Q 001416 322 RAPNLDILTCVK--DS-----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL------Q------P 382 (1081)
Q Consensus 322 ~spd~~lls~s~--D~-----~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~------~------~ 382 (1081)
|||||++|+... .+ .|.+-. + .+....|-+|.. ++.++.|+|. + +
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~--t-------------Wk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERG--T-------------WKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecC--C-------------ceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence 999999985432 21 232211 1 222236778999 9999999983 1 1
Q ss_pred ----eEEEEEECCCeEEEEeCCCCC
Q 001416 383 ----HLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 383 ----~llatgs~dG~Il~iwd~~~~ 403 (1081)
..+|+|+.|+.+ .||.....
T Consensus 291 ~~~y~i~AvgSqDrSl-SVW~T~~~ 314 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSL-SVWNTALP 314 (942)
T ss_pred CcceEEEEEecCCccE-EEEecCCC
Confidence 278999999996 89985443
No 102
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=7.4e-19 Score=207.66 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=174.7
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCc------ccccccccCCCC
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG------RDIPKQELDNKS 166 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~------~~~~~~~~~~~~ 166 (1081)
++.+++|+..... ....+.+| ...|.+++|+|+...++++|+.|+.+ +||+.+... ..+..+..|...
T Consensus 53 ~gvI~L~~~~r~~----~v~~L~gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 53 IGAIRLENQMRKP----PVIKLKGH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred eeEEEeeecCCCc----eEEEEcCC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 7788899876643 24456677 78999999999744588888888777 599876421 122245678899
Q ss_pred eeEEEEeeccccCCCCE-EEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcC
Q 001416 167 LVCMEFLSRSAVGDVPL-VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1081)
Q Consensus 167 I~~ia~~p~~~sp~~~~-l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~ 245 (1081)
|.+++| +|++.. +++|+.|++|++||+++++.+..+. |...|.+++| +++|.+|++++.|++|++||++
T Consensus 128 V~sVaf-----~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~Slsw---spdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 128 ISIIDW-----NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKW---NIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEEE-----CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEE---CCCCCEEEEEecCCEEEEEECC
Confidence 999999 567765 5789999999999999988877764 6678999984 8999999999999999999999
Q ss_pred CCCcccccccceeecccCCcEEEEE-----EeeecCCCCEEEEEECCC----eEEEEECCC-CceeeEecCCCccccCCC
Q 001416 246 HGQDSRELVPKLSLKAHDGGVVAVE-----LSRVMGGSPQLITIGADK----TLAIWDTVS-FKELRRIKPVPKLACHSV 315 (1081)
Q Consensus 246 ~~~~~~~~~~~~~l~~h~~~V~~v~-----fsp~~~~~~~Lvsgs~Dg----~V~iWDl~t-~~~~~~~~~~~~~~~h~~ 315 (1081)
+++.+. ++.+|.+.+.+.. |++ ++.+|++++.|+ +|+|||+++ .+++..+ .+..+..
T Consensus 198 sg~~i~------tl~gH~g~~~s~~v~~~~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~----~ld~~~~ 264 (568)
T PTZ00420 198 KQEIAS------SFHIHDGGKNTKNIWIDGLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTM----SIDNASA 264 (568)
T ss_pred CCcEEE------EEecccCCceeEEEEeeeEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEE----EecCCcc
Confidence 887443 4678887654433 345 788999988774 799999985 5555543 1233334
Q ss_pred CeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC
Q 001416 316 ASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1081)
Q Consensus 316 ~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~ 380 (1081)
.+......+++.++ +|++|+ ++|++..... .. +..+ ....++.+++|.|.
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-------~~------l~~~--~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-------RK------VNEY--KSCSPFRSFGFLPK 317 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-------Ee------eccc--ccCCCccceEEccc
Confidence 44344445567755 777886 7899875311 00 0111 22237788999997
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=8.5e-21 Score=194.51 Aligned_cols=257 Identities=17% Similarity=0.265 Sum_probs=193.8
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeee
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l 82 (1081)
.+|+|-.|.+.|++++|||....|++|+.|++|+++|+..-...+-++.
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------- 212 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------- 212 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH-------------------------------
Confidence 4789999999999999999999999999999999999864222111110
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccc-cccc
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRD-IPKQ 160 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~-~~~~ 160 (1081)
+. ...+|.++.|+|.|. +++.|.+.-+.+ ||++|.+... ....
T Consensus 213 --------------------------------~q--d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 213 --------------------------------FQ--DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred --------------------------------hh--ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcc
Confidence 00 034688999999998 677777777665 9999865321 1124
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
..|.+.|+++.+ ++.+++.++||.||.|++||--+++|+.++..+|.+.--|-+ .|..+++++++.+.|..++
T Consensus 258 ~qht~ai~~V~Y-----s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa--~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 258 DQHTGAITQVRY-----SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA--VFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred cccccceeEEEe-----cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--EEccCCeEEeecCCcceee
Confidence 578899999999 789999999999999999999999999999888876544444 2799999999999999999
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEE-CCCeEEEEECCCCceeeEecCCCccccCCCCeEE
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs-~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
+|.+.++..+.++.-.. ..+....-+...|+. ...+++.-. ..+.++-||.++...+..+ ..+|.+.+.+
T Consensus 331 LWEi~t~R~l~~YtGAg-~tgrq~~rtqAvFNh---tEdyVl~pDEas~slcsWdaRtadr~~l~-----slgHn~a~R~ 401 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAG-TTGRQKHRTQAVFNH---TEDYVLFPDEASNSLCSWDARTADRVALL-----SLGHNGAVRW 401 (430)
T ss_pred eeeecCCceEEEEecCC-cccchhhhhhhhhcC---ccceEEccccccCceeeccccchhhhhhc-----ccCCCCCceE
Confidence 99999998765531110 001111123445665 555665544 3678999999998766544 3699999999
Q ss_pred EeecCCCC-EEEEECCc--eEEEec
Q 001416 320 HPRAPNLD-ILTCVKDS--HIWAIE 341 (1081)
Q Consensus 320 v~~spd~~-lls~s~D~--~IWdi~ 341 (1081)
+.-+|.+. +++||.|- |.|--+
T Consensus 402 i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEeCCCCCceeeecccceeeeeeec
Confidence 99999998 66899885 678543
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-19 Score=205.57 Aligned_cols=238 Identities=16% Similarity=0.291 Sum_probs=191.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEE
Q 001416 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1081)
Q Consensus 11 ~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v 90 (1081)
.+.|+++.|+++|.+|+.|..+|.|.|||..+.+.+.++..+|
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h------------------------------------- 259 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH------------------------------------- 259 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc-------------------------------------
Confidence 7889999999999999999999999999988766666555322
Q ss_pred EEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCCCeeE
Q 001416 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVC 169 (1081)
Q Consensus 91 ~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ 169 (1081)
...|.+++|. + ..+.+|+.++.+. +|++..+.. +.....|...|..
T Consensus 260 -----------------------------~~rvg~laW~--~-~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 260 -----------------------------ASRVGSLAWN--S-SVLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCG 306 (484)
T ss_pred -----------------------------CceeEEEecc--C-ceEEEecCCCcEEEEEEecchhh-hhhhhcccceeee
Confidence 4557778886 3 3677777777664 899876422 2247889999999
Q ss_pred EEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEe--CCCcEEEEEcCCC
Q 001416 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG--SDGLLILWSADHG 247 (1081)
Q Consensus 170 ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs--~Dg~V~vWd~~~~ 247 (1081)
++| ++++.++|+|+.|+.+.|||.....++..+. .|.+.|.+++|+ +-...+||+|+ .|++|++||..++
T Consensus 307 Lkw-----s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awc--P~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 307 LKW-----SPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWC--PWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred eEE-----CCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeC--CCccCceEEcCCCcccEEEEEEcCCC
Confidence 999 7899999999999999999998888888887 899999999985 66667899875 5999999999998
Q ss_pred CcccccccceeecccCCcEEEEEEeeecCCCCEEEEE-E-CCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCC
Q 001416 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-G-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1081)
Q Consensus 248 ~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsg-s-~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd 325 (1081)
..+.. ..-...|.++.|++ ..+-|+++ + .++.|.||++.+.+.+.. +.+|...|..++++||
T Consensus 379 ~~i~~-------vdtgsQVcsL~Wsk---~~kEi~sthG~s~n~i~lw~~ps~~~~~~------l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 379 ARIDS-------VDTGSQVCSLIWSK---KYKELLSTHGYSENQITLWKYPSMKLVAE------LLGHTSRVLYLALSPD 442 (484)
T ss_pred cEecc-------cccCCceeeEEEcC---CCCEEEEecCCCCCcEEEEeccccceeee------ecCCcceeEEEEECCC
Confidence 86654 23457899999999 55444443 3 477899999998776655 4899999999999999
Q ss_pred CCEE-EEECCc--eEEEecc
Q 001416 326 LDIL-TCVKDS--HIWAIEH 342 (1081)
Q Consensus 326 ~~ll-s~s~D~--~IWdi~~ 342 (1081)
|..+ +++.|. ++|++-.
T Consensus 443 g~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 443 GETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCEEEEecccCcEEeccccC
Confidence 9955 777785 6888764
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=9.4e-19 Score=200.78 Aligned_cols=354 Identities=15% Similarity=0.156 Sum_probs=227.8
Q ss_pred ceeeCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCC----
Q 001416 4 LKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKG---- 76 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~---- 76 (1081)
+..|+.-.++|++++|..||+ .+++|+..|.+.+||++..+.+......|...+... -+....+.+.+.|...
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 345555569999999999997 888888899999999999998888876654443332 2222233333222111
Q ss_pred --------Cceeeec--CCceEEEEEeCCeEEEEEcCC-Ccccccc----------ccc---c-----ccC------CCC
Q 001416 77 --------KPTEAMR--GGSVKQVNFYDDDVRFWQLWR-NRAAAAE----------APT---A-----VSN------VTS 121 (1081)
Q Consensus 77 --------~~~~~l~--g~~V~~v~f~Dg~IriWdl~~-~~~~~~~----------~~~---~-----~~h------~~~ 121 (1081)
+.++.-. ..|..+++|++...+.--... ....... ... . .+. .-.
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 1111111 133344444433322221111 1100000 000 0 000 011
Q ss_pred CeeecccCCCC----CeEEEEEecCcEE-EEEecCCCc-ccc---cccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 122 GFASPPPSTKG----RHFLVICCVNKAI-FLDLVTMRG-RDI---PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 122 ~V~sl~fsp~g----~~~l~s~s~d~~i-~wd~~t~~~-~~~---~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
+|..+++.... .+++++.-++... .|+.+.... +.+ ..+......+++++. ++.|++.+.|+..|.
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v-----s~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV-----SFCGNFVFIGYSKGT 471 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE-----eccCceEEEeccCCe
Confidence 23333332210 1133333333333 366554321 100 001112346777777 688999999999999
Q ss_pred EEEEEcCCCeEEEEE--ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEE
Q 001416 193 IRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1081)
Q Consensus 193 I~lwd~~~~~~~~~~--~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~ 270 (1081)
|-+||+++|-....+ ...|..+|++++ ...-++.++|++.+|-+++||......+.. +. -...+.++.
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla---~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~------l~-l~~~~~~iv 541 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLA---VDGTNRLLVSAGADGILKFWDFKKKVLKKS------LR-LGSSITGIV 541 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEE---ecCCCceEEEccCcceEEEEecCCcceeee------ec-cCCCcceee
Confidence 999999999888888 348999999998 577788999999999999999988764433 22 235678889
Q ss_pred EeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCccc
Q 001416 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSA 347 (1081)
Q Consensus 271 fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~ 347 (1081)
++. ....++.+.+|-.|+++|..+.+.++.+ .+|++.++.++|||||++| +++.|+ |+||+-+..
T Consensus 542 ~hr---~s~l~a~~~ddf~I~vvD~~t~kvvR~f------~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~--- 609 (910)
T KOG1539|consen 542 YHR---VSDLLAIALDDFSIRVVDVVTRKVVREF------WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT--- 609 (910)
T ss_pred eee---hhhhhhhhcCceeEEEEEchhhhhhHHh------hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc---
Confidence 988 7889999999999999999998887765 8999999999999999965 888886 789998632
Q ss_pred ccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 348 LTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
.+-.+ +-..+...+.|+|+ +.++||.+.|+.=+++|.
T Consensus 610 ------------lID~~--~vd~~~~sls~SPn-gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 610 ------------LIDGL--LVDSPCTSLSFSPN-GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ------------eeeeE--ecCCcceeeEECCC-CCEEEEEEecCceEEEEE
Confidence 11122 12337889999999 556699999866568996
No 106
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=99.84 E-value=9.5e-24 Score=237.83 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=176.3
Q ss_pred CCCCCCCC-ccEEEEeeccccc--cCCCCCCcceeeecccCceEEEe-----ee-eEEEEEecCcccccccccccc-ccc
Q 001416 659 KSPAEAAP-QNFQLYSWETFQP--VGGLLPQPEWTAWDQTVEYCAFA-----YQ-HYIVISSLCPQYRYLGDVAIP-YAT 728 (1081)
Q Consensus 659 ~~~~~~~~-~~i~~~~~~~~~l--~~~~~~~~k~v~w~~~~~~~~~~-----~~-~~~~v~~y~~~~gsl~d~~~~-~~~ 728 (1081)
.+.|+|.. +|||.+++....- .+.+..|++.+.=.+|.|+|+|. ++ +.|+||||.|. |+|.+++.. ...
T Consensus 59 ~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~-GsL~~~l~~~~~~ 137 (362)
T KOG0192|consen 59 KGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPG-GSLSVLLHKKRKR 137 (362)
T ss_pred EEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCC-CcHHHHHhhcccC
Confidence 57788999 9999998865332 33577788888889999999999 44 58999999999 999999977 356
Q ss_pred ceeeEeeeeeEeccCceEEEeeeCCccccchhh-h-hhhhhhhhHHhhhhH-hhhccceeeeeecccchhhhcccccCCc
Q 001416 729 GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVET-M-KMKEEMKLKEVQSRA-VAEHGELALIAVESSQTAAQDRIKLRPP 805 (1081)
Q Consensus 729 ~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~-~-hg~l~s~nc~vd~rw-v~k~~d~gl~~~~~~~~~~~~~~~~~~~ 805 (1081)
.++|..+..+ +.||++||.|||... | |.-||+.|+++|..| .+||+||||...+...... ......
T Consensus 138 ~l~~~~~l~~--------aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~---~~~~~G 206 (362)
T KOG0192|consen 138 KLPLKVRLRI--------ALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTS---MTSVAG 206 (362)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeecccccc---ccCCCC
Confidence 7888887777 889999999999988 6 999999999999999 9999999999876542100 010112
Q ss_pred chhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecC
Q 001416 806 MLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDG 885 (1081)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 885 (1081)
.+ -|.|||+.+.. +..-..+.|||||||++.|+++|..||...+.- + ..+. +
T Consensus 207 T~-------~wMAPEv~~~~---------~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~--~-----~~~~--v--- 258 (362)
T KOG0192|consen 207 TY-------RWMAPEVLRGE---------KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPV--Q-----VASA--V--- 258 (362)
T ss_pred Cc-------cccChhhhcCC---------CCcCCccchhhhHHHHHHHHHHCCCCCCCCCHH--H-----HHHH--H---
Confidence 22 19999998754 111234579999999999999999999733221 0 0000 0
Q ss_pred eEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 886 VLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 886 ~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...-.+|.+...|+.....+++.||..+|..||.|..|...|+.+
T Consensus 259 ------------~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~ 303 (362)
T KOG0192|consen 259 ------------VVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESI 303 (362)
T ss_pred ------------HhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHH
Confidence 011122333334888889999999999999999999999998865
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=2.7e-19 Score=201.59 Aligned_cols=252 Identities=16% Similarity=0.239 Sum_probs=191.4
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeee-cccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEE
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFAS-PPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~s-l~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~i 170 (1081)
.|+++++|+-...+.. ......+| .+.|.. +++-+..+..++.|+.|..+ +|...+. .....+.+|...|+|+
T Consensus 33 Rd~t~~vw~~~~~~~l--~~~~~~~~-~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~l 107 (745)
T KOG0301|consen 33 RDGTVKVWAKKGKQYL--ETHAFEGP-KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSL 107 (745)
T ss_pred CCCceeeeeccCcccc--cceecccC-cceeeccceeccccCcceEeecccceEEEEecCCC--Cchhhhhccccceeee
Confidence 5999999998766531 12334445 444444 77776444457777777776 5876664 4667789999999999
Q ss_pred EEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001416 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~ 250 (1081)
+. ..++. +++||.|.++++|-. +++...+. +|+..|+++. .-|++ .++|||.|.+||+|.- ++.+
T Consensus 108 s~-----~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~---~l~e~-~~vTgsaDKtIklWk~--~~~l 172 (745)
T KOG0301|consen 108 SI-----GEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVA---SLPEN-TYVTGSADKTIKLWKG--GTLL 172 (745)
T ss_pred ec-----CCcCc-eEecccccceEEecc--hhhhcccC-Ccchheeeee---ecCCC-cEEeccCcceeeeccC--Cchh
Confidence 97 34454 999999999999975 56666676 9999999998 23444 8999999999999975 4433
Q ss_pred cccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEe-ecCCCCEE
Q 001416 251 RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP-RAPNLDIL 329 (1081)
Q Consensus 251 ~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~-~spd~~ll 329 (1081)
+ ++.+|++.|..+++-+ ...++|++.||.|+.|++ ++.++.+. .+|+..++++. .++++.++
T Consensus 173 ~------tf~gHtD~VRgL~vl~----~~~flScsNDg~Ir~w~~-~ge~l~~~------~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 173 K------TFSGHTDCVRGLAVLD----DSHFLSCSNDGSIRLWDL-DGEVLLEM------HGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred h------hhccchhheeeeEEec----CCCeEeecCCceEEEEec-cCceeeee------eccceEEEEEEecCCCCeEE
Confidence 3 4799999999999986 457999999999999999 67777665 79999999999 55555577
Q ss_pred EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 330 TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 330 s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
++|+|+ +||+... +.+.+. +....||++.+-++ +. |++|+.||.| ++|...+
T Consensus 236 s~gEDrtlriW~~~e-----------------~~q~I~-lPttsiWsa~~L~N-gD-Ivvg~SDG~V-rVfT~~k 289 (745)
T KOG0301|consen 236 STGEDRTLRIWKKDE-----------------CVQVIT-LPTTSIWSAKVLLN-GD-IVVGGSDGRV-RVFTVDK 289 (745)
T ss_pred EecCCceEEEeecCc-----------------eEEEEe-cCccceEEEEEeeC-CC-EEEeccCceE-EEEEecc
Confidence 999997 6898752 223443 33348999999987 44 4899999996 9997553
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=3.9e-18 Score=192.15 Aligned_cols=350 Identities=16% Similarity=0.161 Sum_probs=228.8
Q ss_pred cceeeCCCCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEE--EEEecCCccceEEeccCCCeEEEeecCCCCC
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVI--YELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~---~Lasgs~dg~I~IWd~~t~~~i--~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~ 77 (1081)
....+.||.++|+|+.|-|+.. ++++|+.|+.|++|.++....+ .+++. +...+.++...
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~-------------- 110 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVAR-------------- 110 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEee--------------
Confidence 4567899999999999999887 8999999999999999854443 34443 22232222111
Q ss_pred ceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCC-CCCeeecccCC-CCCeEEEEEecCcEEE-EEecCCCc
Q 001416 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNV-TSGFASPPPST-KGRHFLVICCVNKAIF-LDLVTMRG 154 (1081)
Q Consensus 78 ~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~-~~~V~sl~fsp-~g~~~l~s~s~d~~i~-wd~~t~~~ 154 (1081)
..+..+.-.|+++.+||.+..+. .......... ...-.++++.| .+..+++.|+.+..+. +.-.+.+.
T Consensus 111 -------~~~~~~~~ad~~v~vw~~~~~e~--~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 111 -------SSVMTCKAADGTVSVWDKQQDEV--FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred -------eeEEEeeccCceEEEeecCCCce--eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 11111123699999999955541 1111111111 11224556666 4555666666666664 43334455
Q ss_pred ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe---------------------EE---E-----
Q 001416 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---------------------LV---R----- 205 (1081)
Q Consensus 155 ~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~---------------------~~---~----- 205 (1081)
..+....+|.+.|++++|... ..+.-+++++|.|..||||.+.-+. .. .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~--~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARL--GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred eEEEEeeccchhhhhhhhhcc--CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 667778999999999999421 2234479999999999999884221 11 1
Q ss_pred -EEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccc-cceeecccCCcEEEEEEeeecCCCCEEEE
Q 001416 206 -RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELV-PKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1081)
Q Consensus 206 -~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~-~~~~l~~h~~~V~~v~fsp~~~~~~~Lvs 283 (1081)
.+..||.+.|+++.| +|.+..|+|+|.|.++.+|......-+..-. ....+.+...+....-|+| +++.+++
T Consensus 260 eall~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~---n~~~ii~ 333 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP---NSNVIIA 333 (764)
T ss_pred hhhhcCcccceEEEEE---ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC---CCCEEEE
Confidence 112399999999997 7888899999999999999887654332211 1112234456789999999 8899999
Q ss_pred EECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCC
Q 001416 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVP 360 (1081)
Q Consensus 284 gs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~ 360 (1081)
-+.-|-.++|......... ....+.+|...|..++|+|.|.+| +.|.|- ||+.--.. ... ..++ .
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~---~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~--q~~---wHEi--a-- 401 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWT---QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR--QQE---WHEI--A-- 401 (764)
T ss_pred ecccCcEEEEeccCcccee---eccccccccccceeeeecCCCCEEEEeccccceeeeccccc--ccc---eeee--c--
Confidence 9999999999944322222 223468999999999999999955 889885 67543310 000 1110 1
Q ss_pred CeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 361 ~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
.-.-|+- .++|+++-+. +..+++|.++.. +|+|+..
T Consensus 402 --RPQiHGy-Dl~c~~~vn~-~~~FVSgAdEKV-lRvF~aP 437 (764)
T KOG1063|consen 402 --RPQIHGY-DLTCLSFVNE-DLQFVSGADEKV-LRVFEAP 437 (764)
T ss_pred --ccccccc-cceeeehccC-Cceeeeccccee-eeeecCc
Confidence 1123444 7899999885 445455555555 6999854
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=171.50 Aligned_cols=255 Identities=17% Similarity=0.262 Sum_probs=188.8
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
+.-+.|.+.|.|.+|+|+|.+|+||+.|.+|++--+....+..+ +| ..-..++.
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~---g~-----------------------dle~nmhd 136 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT---GH-----------------------DLEFNMHD 136 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---Cc-----------------------ceeeeecC
Confidence 34567999999999999999999999999999876543222110 00 00112334
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEE--EecCCCccccccccc
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL--DLVTMRGRDIPKQEL 162 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~w--d~~t~~~~~~~~~~~ 162 (1081)
+.|+.++|.|+. ..+..++++++.+...+| |-.++ .......+
T Consensus 137 gtirdl~fld~~---------------------------------~s~~~il~s~gagdc~iy~tdc~~g--~~~~a~sg 181 (350)
T KOG0641|consen 137 GTIRDLAFLDDP---------------------------------ESGGAILASAGAGDCKIYITDCGRG--QGFHALSG 181 (350)
T ss_pred CceeeeEEecCC---------------------------------CcCceEEEecCCCcceEEEeecCCC--CcceeecC
Confidence 666666664431 123347777776655554 54444 45566788
Q ss_pred CCCCeeEE-EEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecc-c-----ccceEEEEEeeeCCCCCEEEEEeC
Q 001416 163 DNKSLVCM-EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-H-----KGSISCLMTFMASSGEALLVSGGS 235 (1081)
Q Consensus 163 ~~~~I~~i-a~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~-h-----~~~V~~l~w~~~s~d~~~l~sgs~ 235 (1081)
|.+.|.++ .| ++-.+++|+.|.+|++||++-..++.++... | ...|.+++ ..|.|++|++|-.
T Consensus 182 htghilalysw-------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~---vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 182 HTGHILALYSW-------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA---VDPSGRLLASGHA 251 (350)
T ss_pred CcccEEEEEEe-------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE---ECCCcceeeeccC
Confidence 98888876 45 6889999999999999999988888776311 2 35678887 6999999999999
Q ss_pred CCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC
Q 001416 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1081)
Q Consensus 236 Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~ 315 (1081)
|....+||++.+..++. +..|+..|.|+.|+| ...|+++++.|..|++-|++. ..-+.+ +......|..
T Consensus 252 dssc~lydirg~r~iq~------f~phsadir~vrfsp---~a~yllt~syd~~ikltdlqg-dla~el-~~~vv~ehkd 320 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQR------FHPHSADIRCVRFSP---GAHYLLTCSYDMKIKLTDLQG-DLAHEL-PIMVVAEHKD 320 (350)
T ss_pred CCceEEEEeeCCceeee------eCCCccceeEEEeCC---CceEEEEecccceEEEeeccc-chhhcC-ceEEEEeccC
Confidence 99999999999986654 688999999999999 889999999999999999874 222222 2233467888
Q ss_pred CeEEEeecCCCC-EEEEECCc--eEEEec
Q 001416 316 ASWCHPRAPNLD-ILTCVKDS--HIWAIE 341 (1081)
Q Consensus 316 ~v~~v~~spd~~-lls~s~D~--~IWdi~ 341 (1081)
.+..+.|+|..- +|+.|.|. .+|.++
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 888999999655 77888885 588764
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=193.08 Aligned_cols=241 Identities=19% Similarity=0.294 Sum_probs=188.5
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
+.+|.||+..|+.+.|||+...+++++.|..|+||..........
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~----------------------------------- 298 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS----------------------------------- 298 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc-----------------------------------
Confidence 567899999999999999999999999999999999865331111
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
...| ..+|+.+..+|.|+ +|+++++++.. +.|+.++........+.
T Consensus 299 -------------------------------~~~h-~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 299 -------------------------------SRPH-EEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred -------------------------------cccc-cccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 1122 56788888999998 66666766666 46888875433322233
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
..-.+++.+| +|||-.+.+|+.||.|++||++++..+..|. +|.++|..++ |+.+|.+|++++.|+.|++|
T Consensus 346 s~v~~ts~~f-----HpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~---FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 346 SDVEYTSAAF-----HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAIS---FSENGYWLATAADDGSVKLW 416 (506)
T ss_pred ccceeEEeeE-----cCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEE---eccCceEEEEEecCCeEEEE
Confidence 3456899999 6899999999999999999999999999997 8999999998 79999999999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECC--CCceeeEecCCCccccCCCCeEEE
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--SFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~--t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
|++..+....+ .+. ...+|.+++|.+ .|.+|+.++.|=+|.+++-. ++.++. .+..|.+..+++
T Consensus 417 DLRKl~n~kt~----~l~-~~~~v~s~~fD~---SGt~L~~~g~~l~Vy~~~k~~k~W~~~~------~~~~~sg~st~v 482 (506)
T KOG0289|consen 417 DLRKLKNFKTI----QLD-EKKEVNSLSFDQ---SGTYLGIAGSDLQVYICKKKTKSWTEIK------ELADHSGLSTGV 482 (506)
T ss_pred Eehhhccccee----ecc-ccccceeEEEcC---CCCeEEeecceeEEEEEecccccceeee------hhhhccccccee
Confidence 99987754432 232 234799999998 99999999888777777643 333333 346788888899
Q ss_pred eecCCCCEE-EEECCc
Q 001416 321 PRAPNLDIL-TCVKDS 335 (1081)
Q Consensus 321 ~~spd~~ll-s~s~D~ 335 (1081)
.|....+++ ++|.|.
T Consensus 483 ~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 483 RFGEHAQYLASTSMDA 498 (506)
T ss_pred eecccceEEeeccchh
Confidence 998888877 555553
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=1.6e-20 Score=187.37 Aligned_cols=247 Identities=16% Similarity=0.221 Sum_probs=200.0
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~ 81 (1081)
+-+|.||.+.|.+..++.+-..-|+++.|-+-+|||.-+|..+.+|+-. ..++.+ +.+.+.|.+|+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hk--hivk~~af~~ds~~lltgg---------- 119 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHK--HIVKAVAFSQDSNYLLTGG---------- 119 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhh--heeeeEEecccchhhhccc----------
Confidence 4579999999999999999889999999999999999999999999844 444444 78888888865
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQ 160 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~ 160 (1081)
.+..+|++|++..+. ......+| .+.|..+.|....+ .|.+.++++.++ ||.+++. .+..+
T Consensus 120 -----------~ekllrvfdln~p~A---pp~E~~gh-tg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt--~v~sL 181 (334)
T KOG0278|consen 120 -----------QEKLLRVFDLNRPKA---PPKEISGH-TGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT--EVQSL 181 (334)
T ss_pred -----------hHHHhhhhhccCCCC---CchhhcCC-CCcceeEEEeccCc-eEEeeccCCceEEEEeccCc--EEEEE
Confidence 578899999998875 33344555 77889999988777 455557777665 9999974 23222
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
.-..+|+++.+ +++|.+|.++ ..+.|++||..+...++.+. -...|.+.. .+|+...++.|+.|..++
T Consensus 182 -~~~s~VtSlEv-----s~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SAS---L~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 182 -EFNSPVTSLEV-----SQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESAS---LHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred -ecCCCCcceee-----ccCCCEEEEe-cCceeEEeccccccceeecc--Ccccccccc---ccCCCceEEecCcceEEE
Confidence 33568999999 6788765554 77889999999999988875 455677766 588889999999999999
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCce
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~ 300 (1081)
.||..++..+..+ .++|-++|.|+.|+| +|...++||.||+|++|.+..++.
T Consensus 250 kfDy~TgeEi~~~-----nkgh~gpVhcVrFSP---dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 250 KFDYNTGEEIGSY-----NKGHFGPVHCVRFSP---DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEeccCCceeeec-----ccCCCCceEEEEECC---CCceeeccCCCceEEEEEecCCCc
Confidence 9999999866542 389999999999999 999999999999999999876654
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-19 Score=193.46 Aligned_cols=229 Identities=17% Similarity=0.228 Sum_probs=182.8
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
-.+++.|++- +|+|.+++.|+..|.|++|.+.+|..+..+. +|-..|+|+. |+-|+.+|+|||.||.|.+|
T Consensus 80 ~Pg~v~al~s-----~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~---fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 80 LPGPVHALAS-----SNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLK---FSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred cccceeeeec-----CCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEE---EeCCCcEEEecCCCccEEEE
Confidence 4578999998 7899999999999999999999999999886 9999999998 69999999999999999999
Q ss_pred EcCCC---CcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEE
Q 001416 243 SADHG---QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 243 d~~~~---~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
++..- ...+...|...+..|+-+|+++...+. +...+|+|+|.|+++|+||+..+..+.++ .....+.+
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~D~t~k~wdlS~g~LLlti-------~fp~si~a 222 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASEDRTIKLWDLSLGVLLLTI-------TFPSSIKA 222 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecCCceEEEEEeccceeeEEE-------ecCCccee
Confidence 87531 112234577788999999999998872 24579999999999999999999988876 23456779
Q ss_pred EeecCCCCEE-EEECCceEEEeccCCccccccc---ccccCCCCCCeEEccCCC-ccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 320 HPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRP---LCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 320 v~~spd~~ll-s~s~D~~IWdi~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
++.+|....+ .|+++|.||-.......+.... -..+........+.+|.. ..|+|++++-| +.++++|+.||.|
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D-gtlLlSGd~dg~V 301 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD-GTLLLSGDEDGKV 301 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC-ccEEEeeCCCCCE
Confidence 9999988865 7888999886654333322211 111122444556777765 58999999998 8889999999997
Q ss_pred EEEeCCCCCCCCcccC
Q 001416 395 ISEFDPRSLPAVAPLP 410 (1081)
Q Consensus 395 l~iwd~~~~~~~~~~~ 410 (1081)
.+||+.+++.+.++.
T Consensus 302 -cvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 302 -CVWDIYSKQCIRTLQ 316 (476)
T ss_pred -EEEecchHHHHHHHh
Confidence 899999888777664
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.6e-19 Score=199.84 Aligned_cols=307 Identities=15% Similarity=0.205 Sum_probs=218.5
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe----ccCCCeEEEeecCCCCCcee
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV----GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v----s~~~~~lasg~~d~~~~~~~ 80 (1081)
..+.||++.|+||..+|.|.||++|+.||+|+||.+.||.|++++.... .+.++ .++...||.+-.+. +.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~~~~----~~ 467 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAVGEC----VL 467 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEecCc----eE
Confidence 3578999999999999999999999999999999999999999998643 55555 44455566543221 11
Q ss_pred ee---cCC---------ceE---EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecC---
Q 001416 81 AM---RGG---------SVK---QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--- 142 (1081)
Q Consensus 81 ~l---~g~---------~V~---~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d--- 142 (1081)
++ .|. ... .-.+-+..+..|.-...+...........| ...|..+.|+-.|.++.+++.++
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceEEEeccCCCcc
Confidence 11 110 000 112256777888765443322223344444 67899999999999665555433
Q ss_pred cEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEee
Q 001416 143 KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222 (1081)
Q Consensus 143 ~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~ 222 (1081)
.+++.++...+. ...+....+.|.++.| +|...++++++. ..|++||+.....++.+. .....|.+++
T Consensus 547 ~VliHQLSK~~s--Q~PF~kskG~vq~v~F-----HPs~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~ms--- 614 (733)
T KOG0650|consen 547 SVLIHQLSKRKS--QSPFRKSKGLVQRVKF-----HPSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMS--- 614 (733)
T ss_pred eEEEEecccccc--cCchhhcCCceeEEEe-----cCCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeee---
Confidence 344566654322 2234455678999999 567788888865 569999998777766665 4456677777
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc-ee
Q 001416 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-EL 301 (1081)
Q Consensus 223 ~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~-~~ 301 (1081)
.+|.|+.|+.|+.|+.+..+|++-.. +|..++.-|...|++|+||+ .-+++++|++||++.|+--.--. .+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~---ryPLfas~sdDgtv~Vfhg~VY~Dl~ 686 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHK---RYPLFASGSDDGTVIVFHGMVYNDLL 686 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcc---ccceeeeecCCCcEEEEeeeeehhhh
Confidence 69999999999999999999998765 24556889999999999999 89999999999999998532110 00
Q ss_pred --eEecCCCccccCCCC----eEEEeecCCCCEE-EEECCc--eEE
Q 001416 302 --RRIKPVPKLACHSVA----SWCHPRAPNLDIL-TCVKDS--HIW 338 (1081)
Q Consensus 302 --~~~~~~~~~~~h~~~----v~~v~~spd~~ll-s~s~D~--~IW 338 (1081)
-.+.|+..+.+|... |..+.|||....| ++|.|+ ++|
T Consensus 687 qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 687 QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 012355667888775 8899999999965 888886 566
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.8e-19 Score=179.85 Aligned_cols=252 Identities=16% Similarity=0.178 Sum_probs=186.6
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCc-ccccccccCCCCeeEEEEeeccccC-CCCEEEEEECCCeEEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-RDIPKQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVL 196 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~-~~~~~~~~~~~~I~~ia~~p~~~sp-~~~~l~sgs~Dg~I~lw 196 (1081)
.+.|..+...--|+ .|++++.|+.+ ++....... ..+..+.+|.++|..++|. +| -|.+|++++.||.|.||
T Consensus 11 ~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa----hPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA----HPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec----ccccCcEeeEeecCceEEEE
Confidence 56666766666787 55666666655 587765543 5667789999999999994 22 58899999999999999
Q ss_pred EcCCC--eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeee
Q 001416 197 SMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1081)
Q Consensus 197 d~~~~--~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 274 (1081)
.-.++ .....+. .|...|++++|- .+.-|..|++++.||.|.|.+.+.... +........|.-+|++++|.|.
T Consensus 86 ke~~g~w~k~~e~~-~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 86 KEENGRWTKAYEHA-AHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred ecCCCchhhhhhhh-hhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCc
Confidence 98766 3344554 899999999973 556688999999999999999887521 1122335789999999999994
Q ss_pred cCCC-----------CEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-----EEEEECCce--
Q 001416 275 MGGS-----------PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-----ILTCVKDSH-- 336 (1081)
Q Consensus 275 ~~~~-----------~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-----lls~s~D~~-- 336 (1081)
.-.+ ..|+||+-|+.|+||+..+++ .....++.+|.+.|..++|.|... +.+||.|++
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 3223 579999999999999998762 222344799999999999999642 458999986
Q ss_pred EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 337 IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
||..+. .+..-. .+ .+..... .+|.+.|++. +++|++++.|+.| .+|..
T Consensus 237 Iwt~~~-e~e~wk--------~t---ll~~f~~-~~w~vSWS~s-Gn~LaVs~GdNkv-tlwke 285 (299)
T KOG1332|consen 237 IWTKDE-EYEPWK--------KT---LLEEFPD-VVWRVSWSLS-GNILAVSGGDNKV-TLWKE 285 (299)
T ss_pred EEEecC-ccCccc--------cc---ccccCCc-ceEEEEEecc-ccEEEEecCCcEE-EEEEe
Confidence 576653 211110 11 1222233 8999999998 7888999999996 89963
No 115
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.3e-19 Score=209.97 Aligned_cols=211 Identities=19% Similarity=0.181 Sum_probs=161.4
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC--------------------------------C--------
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------------------------------W-------- 201 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~--------------------------------~-------- 201 (1081)
.|.+.|+++.| ++||+|||+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKF-----S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGAIWAMKF-----SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCcEEEEEe-----CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 88999999999 89999999999999999998754 0
Q ss_pred --------------------eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecc
Q 001416 202 --------------------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1081)
Q Consensus 202 --------------------~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~ 261 (1081)
++++.+. ||.+.|..+.| +.+ ++|+|+|.|.|||+|++...+++.. ..
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~-GHt~DILDlSW---SKn-~fLLSSSMDKTVRLWh~~~~~CL~~-------F~ 407 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFK-GHTADILDLSW---SKN-NFLLSSSMDKTVRLWHPGRKECLKV-------FS 407 (712)
T ss_pred ccccCCccccCCCccccccccchhhhh-ccchhheeccc---ccC-CeeEeccccccEEeecCCCcceeeE-------Ee
Confidence 0112223 89999999998 554 5899999999999999999888764 46
Q ss_pred cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEE
Q 001416 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIW 338 (1081)
Q Consensus 262 h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IW 338 (1081)
|..-|+||+|+|. |.+|+++||-|+.|+||++...+.+.-. .-..-|++++|.|||+.. .|+.+| ++|
T Consensus 408 HndfVTcVaFnPv--DDryFiSGSLD~KvRiWsI~d~~Vv~W~-------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 408 HNDFVTCVAFNPV--DDRYFISGSLDGKVRLWSISDKKVVDWN-------DLRDLITAVCYSPDGKGAVIGTFNGYCRFY 478 (712)
T ss_pred cCCeeEEEEeccc--CCCcEeecccccceEEeecCcCeeEeeh-------hhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence 9999999999995 8899999999999999999877654322 222678999999999955 777777 678
Q ss_pred EeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCc
Q 001416 339 AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1081)
Q Consensus 339 di~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~ 407 (1081)
+.....+.. ...+..... + ...+. +|+++.|.|....-+.+.++|..| +|+|.+....+.
T Consensus 479 ~t~~lk~~~-~~~I~~~~~-K-----k~~~~-rITG~Q~~p~~~~~vLVTSnDSrI-RI~d~~~~~lv~ 538 (712)
T KOG0283|consen 479 DTEGLKLVS-DFHIRLHNK-K-----KKQGK-RITGLQFFPGDPDEVLVTSNDSRI-RIYDGRDKDLVH 538 (712)
T ss_pred EccCCeEEE-eeeEeeccC-c-----cccCc-eeeeeEecCCCCCeEEEecCCCce-EEEeccchhhhh
Confidence 776432211 111111111 0 11234 899999999877667888999997 999987554444
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=204.92 Aligned_cols=235 Identities=21% Similarity=0.281 Sum_probs=188.9
Q ss_pred eecccCCCCCeEEEEEecCcEE-EEEecCC-CcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC
Q 001416 124 ASPPPSTKGRHFLVICCVNKAI-FLDLVTM-RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1081)
Q Consensus 124 ~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~-~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~ 201 (1081)
..++|+.-..++|++++.++.+ +||+... +.+.+..+..|...+++++||+ ....+|++||.||+|++||++..
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~----tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS----TEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc----CCccEEEecCCCceEEEEeeecc
Confidence 4566766556688988888887 5999752 2345556788999999999974 45678999999999999999988
Q ss_pred eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEE
Q 001416 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281 (1081)
Q Consensus 202 ~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~L 281 (1081)
+...++. +....|..++| .+..++.|+++...|.+.+||++.... +...+.+|.++|.|+.|+| ++.+|
T Consensus 167 ~S~~t~~-~nSESiRDV~f--sp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP---nr~~l 235 (839)
T KOG0269|consen 167 KSKSTFR-SNSESIRDVKF--SPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP---NREWL 235 (839)
T ss_pred ccccccc-ccchhhhceee--ccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecC---CCcee
Confidence 8888887 78899999995 466789999999999999999998652 3445789999999999999 99999
Q ss_pred EEEECCCeEEEEECCCCceeeEecCCCccccC-CCCeEEEeecCCCCE-E-EEE--CC--ceEEEeccCCcccccccccc
Q 001416 282 ITIGADKTLAIWDTVSFKELRRIKPVPKLACH-SVASWCHPRAPNLDI-L-TCV--KD--SHIWAIEHPTYSALTRPLCE 354 (1081)
Q Consensus 282 vsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h-~~~v~~v~~spd~~l-l-s~s--~D--~~IWdi~~~~~~~~~~~~~~ 354 (1081)
+|||.|+.|+|||+.+.+.-... .-+ ..+|.++.|-|+.++ | +|+ .| .+|||++.+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~------tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP----------- 298 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKH------TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP----------- 298 (839)
T ss_pred eecCCCccEEEEeccCCCcccee------EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-----------
Confidence 99999999999999865432111 122 347889999998873 3 444 23 379999964
Q ss_pred cCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 355 LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 355 ~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
..|-.++..|.. -++.++|.......+.+++.||++
T Consensus 299 ---YIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 299 ---YIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ---cccceeeeccCc-cccceeccCCCceeeEeecCccHH
Confidence 677778888988 899999987667788999999996
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.7e-18 Score=178.08 Aligned_cols=262 Identities=13% Similarity=0.110 Sum_probs=185.1
Q ss_pred CCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEE
Q 001416 119 VTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1081)
Q Consensus 119 ~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd 197 (1081)
..+.|.+++|||....++++++.|+.++ |+++......-+....|.++|.+++| +.+|..+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~W-----sddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCW-----SDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEE-----ccCCceEEeeccCCceEEEE
Confidence 3678999999997777888888888775 99886422222445678899999999 78999999999999999999
Q ss_pred cCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCC
Q 001416 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1081)
Q Consensus 198 ~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~ 277 (1081)
+.+++.... . .|.++|.++.|+ ....-..|+|||.|.+||.||++....+.. +. -...|.+++. .
T Consensus 101 L~S~Q~~~v-~-~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t------~~-LPeRvYa~Dv-----~ 165 (347)
T KOG0647|consen 101 LASGQVSQV-A-AHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSNPVAT------LQ-LPERVYAADV-----L 165 (347)
T ss_pred ccCCCeeee-e-ecccceeEEEEe-cCCCcceeEecccccceeecccCCCCeeee------ee-ccceeeehhc-----c
Confidence 999966544 3 799999999986 444567999999999999999998774433 22 2356777766 4
Q ss_pred CCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEECCceE--EEeccCCcccccccccc
Q 001416 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTRPLCE 354 (1081)
Q Consensus 278 ~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~~I--Wdi~~~~~~~~~~~~~~ 354 (1081)
.++++.+..++.|.+|+++.+....+- ... .-.-.+.|++..+|.+ ++.||-+||+ ..++.+.. ...-.++.
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~--~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkC 240 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKR--IES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKC 240 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhh--hcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEE
Confidence 479999999999999999765432211 010 1122467888888877 5567888874 45554211 11112222
Q ss_pred cCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCC
Q 001416 355 LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPT 411 (1081)
Q Consensus 355 ~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~ 411 (1081)
+....+. ...-..|++|+|||. -..++|.+.||+. ..||-..+..+...++
T Consensus 241 HR~~~~~----~~~VYaVNsi~FhP~-hgtlvTaGsDGtf-~FWDkdar~kLk~s~~ 291 (347)
T KOG0647|consen 241 HRSTNSV----NDDVYAVNSIAFHPV-HGTLVTAGSDGTF-SFWDKDARTKLKTSET 291 (347)
T ss_pred eccCCCC----CCceEEecceEeecc-cceEEEecCCceE-EEecchhhhhhhccCc
Confidence 2211110 001236889999998 4456999999997 8999776655555443
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.1e-19 Score=183.32 Aligned_cols=221 Identities=22% Similarity=0.361 Sum_probs=185.0
Q ss_pred cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeC
Q 001416 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1081)
Q Consensus 156 ~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~ 235 (1081)
.+..+.+|.+.|+.++. ....+.+.++|.|.+-+||.+++++|+.++. ||.+.|++++ |++.+.+++++|.
T Consensus 140 lvre~~GHkDGiW~Vaa-----~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsik---fh~s~~L~lTaSG 210 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAA-----DSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIK---FHNSGLLLLTASG 210 (481)
T ss_pred ehhhhcccccceeeehh-----hcCCcceeecccccceeEEeeccccceeeec-ccccceeeEE---eccccceEEEccC
Confidence 34457899999999998 5567789999999999999999999999998 9999999998 6999999999999
Q ss_pred CCcEEEEEc------CC------------------------------CCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 236 DGLLILWSA------DH------------------------------GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 236 Dg~V~vWd~------~~------------------------------~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
|++-.||.. .. +..++ .|...+.+|...|.+..|-. .++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR--vPl~~ltgH~~vV~a~dWL~---gg~ 285 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR--VPLMRLTGHRAVVSACDWLA---GGQ 285 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee--eeeeeeeccccceEehhhhc---Ccc
Confidence 999999972 11 00011 25677889999999999998 899
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccC
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELS 356 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~ 356 (1081)
.+++++.|++-.+||++++..++.+ .+|....+.++-||..+++ +.|.|. |+||++..
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~L------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea------------- 346 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNIL------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA------------- 346 (481)
T ss_pred eeeeeeccccceeeeeccCceeccc------cCcchhccccccCCcceEEEEeccCceeEeccchhh-------------
Confidence 9999999999999999999988765 8999999999999999976 677785 79999842
Q ss_pred CCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC-CCCcccCCCCC
Q 001416 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL-PAVAPLPTPSG 414 (1081)
Q Consensus 357 ~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~-~~~~~~~~~~~ 414 (1081)
-..+..|.+|.. .|+++.|.-+ .+ +++|++|.+| ++||++.+ .+++++.+.+.
T Consensus 347 -I~sV~VFQGHtd-tVTS~vF~~d-d~-vVSgSDDrTv-KvWdLrNMRsplATIRtdS~ 400 (481)
T KOG0300|consen 347 -IQSVAVFQGHTD-TVTSVVFNTD-DR-VVSGSDDRTV-KVWDLRNMRSPLATIRTDSP 400 (481)
T ss_pred -cceeeeeccccc-ceeEEEEecC-Cc-eeecCCCceE-EEeeeccccCcceeeecCCc
Confidence 233457899999 9999999886 44 5999999997 99999874 56777766553
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=4.4e-19 Score=192.09 Aligned_cols=260 Identities=16% Similarity=0.179 Sum_probs=196.8
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEe
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFL 173 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~ 173 (1081)
.|-|+|||+..........+...-.....|+++...|||+.+|+.|....+-+||+.+...+-...+....-...+++.
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~- 517 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI- 517 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc-
Confidence 6889999998764322222222222366899999999999777777766666899987643221111222234566777
Q ss_pred eccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 001416 174 SRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL 253 (1081)
Q Consensus 174 p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~ 253 (1081)
+||.+..++++.||.|.|||+.+...++.|. ||+..+.|+. .+++|..|-||+.|++||.||++.+..+.+
T Consensus 518 ----spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascId---is~dGtklWTGGlDntvRcWDlregrqlqq- 588 (705)
T KOG0639|consen 518 ----SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCID---ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ- 588 (705)
T ss_pred ----CCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEE---ecCCCceeecCCCccceeehhhhhhhhhhh-
Confidence 7899999999999999999999999999998 9999999998 699999999999999999999999875432
Q ss_pred ccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEE
Q 001416 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCV 332 (1081)
Q Consensus 254 ~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s 332 (1081)
..-.+.|.++.++| .+.+++.|-..+.+.|-.....+. . .+..|..-|.++.|.+.|+++ +.|
T Consensus 589 ------hdF~SQIfSLg~cP---~~dWlavGMens~vevlh~skp~k-y------qlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 589 ------HDFSSQIFSLGYCP---TGDWLAVGMENSNVEVLHTSKPEK-Y------QLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ------hhhhhhheecccCC---CccceeeecccCcEEEEecCCccc-e------eecccccEEEEEEecccCceeeecC
Confidence 12247799999999 999999999999988877654332 2 246788999999999999965 778
Q ss_pred CCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 333 KDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 333 ~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
.|+ ..|....+. . .|.......|.|+..+-+ ..+|+||+.|..- .+|
T Consensus 653 kDnlLnawrtPyGa---------------s--iFqskE~SsVlsCDIS~d-dkyIVTGSGdkkA-TVY 701 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGA---------------S--IFQSKESSSVLSCDISFD-DKYIVTGSGDKKA-TVY 701 (705)
T ss_pred chhhhhhccCcccc---------------c--eeeccccCcceeeeeccC-ceEEEecCCCcce-EEE
Confidence 887 468765421 1 233334448999999998 7788999999763 444
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.1e-18 Score=177.06 Aligned_cols=270 Identities=16% Similarity=0.193 Sum_probs=196.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEE
Q 001416 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1081)
Q Consensus 10 H~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~ 89 (1081)
-.+.|.+|.|+|.+..|+.++.||.+++||+........++..+ .-..+.-.+...+++|.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~-plL~c~F~d~~~~~~G~------------------ 72 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA-PLLDCAFADESTIVTGG------------------ 72 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC-ceeeeeccCCceEEEec------------------
Confidence 36789999999999999999999999999999876666665221 11111111222233322
Q ss_pred EEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCee
Q 001416 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLV 168 (1081)
Q Consensus 90 v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~ 168 (1081)
.||.|+.+|+++++. ...+.+...|.++.+++... .+++|+.|+.+ +||.+... ... .....+.|.
T Consensus 73 ---~dg~vr~~Dln~~~~------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~--~~~-~~d~~kkVy 139 (323)
T KOG1036|consen 73 ---LDGQVRRYDLNTGNE------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV--VVG-TFDQGKKVY 139 (323)
T ss_pred ---cCceEEEEEecCCcc------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc--ccc-ccccCceEE
Confidence 589999999999874 23333488999999998665 67777777766 59988621 121 222345899
Q ss_pred EEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEE-EecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 001416 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRR-YTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~-~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~ 247 (1081)
|+.. .+..|++|+.|..|.+||+++.....+ -...-+-.+.|++- -|++.-++.+|-||.|.+=.++..
T Consensus 140 ~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~---~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 140 CMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL---VPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE---ecCCCceEEEeecceEEEEccCCc
Confidence 9988 588999999999999999987644332 22345677889982 346677888999999998777766
Q ss_pred CcccccccceeecccC---------CcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeE
Q 001416 248 QDSRELVPKLSLKAHD---------GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1081)
Q Consensus 248 ~~~~~~~~~~~l~~h~---------~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~ 318 (1081)
...+. .++.++.|. -+|++++|+| -...|+||+.||.|.+||+.+.+.+..+ ..-...|.
T Consensus 210 ~~~~s--kkyaFkCHr~~~~~~~~~yPVNai~Fhp---~~~tfaTgGsDG~V~~Wd~~~rKrl~q~------~~~~~SI~ 278 (323)
T KOG1036|consen 210 EEAQS--KKYAFKCHRLSEKDTEIIYPVNAIAFHP---IHGTFATGGSDGIVNIWDLFNRKRLKQL------AKYETSIS 278 (323)
T ss_pred hHHhh--hceeEEeeecccCCceEEEEeceeEecc---ccceEEecCCCceEEEccCcchhhhhhc------cCCCCceE
Confidence 43332 455666664 3689999999 6789999999999999999998887765 33456788
Q ss_pred EEeecCCCCEEEEE
Q 001416 319 CHPRAPNLDILTCV 332 (1081)
Q Consensus 319 ~v~~spd~~lls~s 332 (1081)
+++|+.+|..|+.+
T Consensus 279 slsfs~dG~~LAia 292 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIA 292 (323)
T ss_pred EEEeccCCCeEEEE
Confidence 99999999988543
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.1e-18 Score=176.14 Aligned_cols=257 Identities=15% Similarity=0.171 Sum_probs=185.8
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~ 199 (1081)
...|.++.|+|.++.+++++.++.+.+||..... ....-.|..++.+++|. +...+++|+-||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---l~~~~~~~~plL~c~F~------d~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---LKLKFKHGAPLLDCAFA------DESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---hhhheecCCceeeeecc------CCceEEEeccCceEEEEEec
Confidence 6679999999998888888877777789988753 33345678999999993 46689999999999999999
Q ss_pred CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 200 ~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
++.....- .|...|.|+. ..+....+++||.|++|++||.+....... +. ..+.|.++.. .++
T Consensus 84 ~~~~~~ig--th~~~i~ci~---~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v-----~g~ 146 (323)
T KOG1036|consen 84 TGNEDQIG--THDEGIRCIE---YSYEVGCVISGSWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDV-----SGN 146 (323)
T ss_pred CCcceeec--cCCCceEEEE---eeccCCeEEEcccCccEEEEeccccccccc------cc-cCceEEEEec-----cCC
Confidence 87665443 6999999998 467778999999999999999987443222 22 3347888877 568
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEECCceEE-E-eccCCc-cccccccccc
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHIW-A-IEHPTY-SALTRPLCEL 355 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~~IW-d-i~~~~~-~~~~~~~~~~ 355 (1081)
.|+.|+.|..|.+||+++.....+.. ...-.-.+.|+++-|++. ++++|-||||. + ++.... ......+..|
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhc----cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999999999998866433211 122233677999999766 78889999863 1 221101 0111122222
Q ss_pred CCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCC
Q 001416 356 SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTP 412 (1081)
Q Consensus 356 ~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~ 412 (1081)
.....-. .-..+|++|+|||- -..+|||+.||.| .+||+..++.+..++..
T Consensus 223 r~~~~~~----~~~yPVNai~Fhp~-~~tfaTgGsDG~V-~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 223 RLSEKDT----EIIYPVNAIAFHPI-HGTFATGGSDGIV-NIWDLFNRKRLKQLAKY 273 (323)
T ss_pred ecccCCc----eEEEEeceeEeccc-cceEEecCCCceE-EEccCcchhhhhhccCC
Confidence 2111100 01238999999998 5567999999997 89999998888877655
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=7.2e-19 Score=190.50 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=220.6
Q ss_pred eCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecC-CccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR---QVIYELKAG-GVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 7 l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~---~~i~~~~~~-~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
...|..-|.+++.|...+.+.||+. |.|+|||+... ..+..+..- ..+-++.. .++++.|.+|+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG--------- 484 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG--------- 484 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc---------
Confidence 4479899999999998899999864 68999998632 233333321 12223333 88999988875
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCccccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~ 160 (1081)
+-.++.|||+......... ........+.+++.+||.+..|++++++.+.+||+.+. ..+..+
T Consensus 485 ------------eastlsiWDLAapTprika---eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~Vrqf 547 (705)
T KOG0639|consen 485 ------------EASTLSIWDLAAPTPRIKA---ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQF 547 (705)
T ss_pred ------------ccceeeeeeccCCCcchhh---hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecc
Confidence 4678999999887642211 11111235788999999998888888888889999875 356678
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
.+|.+.+.||.. +++|..|.||+-|++||.||+++++.+... .....|+++- ..|.+.+++.|-..+.+-
T Consensus 548 qGhtDGascIdi-----s~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg---~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 548 QGHTDGASCIDI-----SKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLG---YCPTGDWLAVGMENSNVE 617 (705)
T ss_pred cCCCCCceeEEe-----cCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecc---cCCCccceeeecccCcEE
Confidence 999999999999 789999999999999999999998877664 4678899997 689999999999999988
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
|......+ ++.+.-|++.|.++.|.+ .|+++++.+.|+.+..|.+.-|..+... .....|.++
T Consensus 618 vlh~skp~-------kyqlhlheScVLSlKFa~---cGkwfvStGkDnlLnawrtPyGasiFqs-------kE~SsVlsC 680 (705)
T KOG0639|consen 618 VLHTSKPE-------KYQLHLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSC 680 (705)
T ss_pred EEecCCcc-------ceeecccccEEEEEEecc---cCceeeecCchhhhhhccCccccceeec-------cccCcceee
Confidence 87765543 455788999999999999 9999999999999999999888766543 335688899
Q ss_pred eecCCCCEE-EEECCc--eEEEe
Q 001416 321 PRAPNLDIL-TCVKDS--HIWAI 340 (1081)
Q Consensus 321 ~~spd~~ll-s~s~D~--~IWdi 340 (1081)
..+-|.++| +||+|. .||.+
T Consensus 681 DIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 681 DISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccCceEEEecCCCcceEEEEE
Confidence 999999976 788874 57765
No 123
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=189.24 Aligned_cols=277 Identities=13% Similarity=0.171 Sum_probs=203.6
Q ss_pred CCccceEEe--ccCC-CeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeeccc
Q 001416 52 GGVDQRRLV--GAKL-EKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP 128 (1081)
Q Consensus 52 ~~~~~v~~v--s~~~-~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~f 128 (1081)
+|.+++.++ +|.. ..+++|+ .||.|++||+.+..+ ...+..| .+.|..+++
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs---------------------~DG~VkiWnlsqR~~----~~~f~AH-~G~V~Gi~v 117 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGS---------------------CDGEVKIWNLSQREC----IRTFKAH-EGLVRGICV 117 (433)
T ss_pred ccccccchhhcCcchhhhhhccc---------------------cCceEEEEehhhhhh----hheeecc-cCceeeEEe
Confidence 566777776 4443 4556554 699999999998775 5567777 888999999
Q ss_pred CCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001416 129 STKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1081)
Q Consensus 129 sp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~ 207 (1081)
.. . .++++++|+.+ .|-+... ... .......+..+.- +..+..++||+.+ |.|||.+-..++..+
T Consensus 118 ~~--~-~~~tvgdDKtvK~wk~~~~---p~~-tilg~s~~~gIdh-----~~~~~~FaTcGe~--i~IWD~~R~~Pv~sm 183 (433)
T KOG0268|consen 118 TQ--T-SFFTVGDDKTVKQWKIDGP---PLH-TILGKSVYLGIDH-----HRKNSVFATCGEQ--IDIWDEQRDNPVSSM 183 (433)
T ss_pred cc--c-ceEEecCCcceeeeeccCC---cce-eeecccccccccc-----ccccccccccCce--eeecccccCCcccee
Confidence 76 2 45666666666 5866542 111 1122344555655 3456678888654 999999888888888
Q ss_pred ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC
Q 001416 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1081)
Q Consensus 208 ~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D 287 (1081)
. --...|.++. +++-....|++|+.|+.|.+||+++++.++.. .+. ..-+.++|+| ....+++|+.|
T Consensus 184 s-wG~Dti~svk--fNpvETsILas~~sDrsIvLyD~R~~~Pl~KV----i~~---mRTN~IswnP---eafnF~~a~ED 250 (433)
T KOG0268|consen 184 S-WGADSISSVK--FNPVETSILASCASDRSIVLYDLRQASPLKKV----ILT---MRTNTICWNP---EAFNFVAANED 250 (433)
T ss_pred e-cCCCceeEEe--cCCCcchheeeeccCCceEEEecccCCcccee----eee---ccccceecCc---cccceeecccc
Confidence 7 4557788888 25666778888889999999999999876542 122 3357899999 88899999999
Q ss_pred CeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEECC--ceEEEeccCCcccccccccccCCCCCCeEE
Q 001416 288 KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKD--SHIWAIEHPTYSALTRPLCELSSLVPPQVL 364 (1081)
Q Consensus 288 g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D--~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l 364 (1081)
..+..+|++..+. ++....+|.+.|..+.|+|.|+ +++||.| +|||..+....+. .+
T Consensus 251 ~nlY~~DmR~l~~-----p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd---------------iY 310 (433)
T KOG0268|consen 251 HNLYTYDMRNLSR-----PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD---------------IY 310 (433)
T ss_pred ccceehhhhhhcc-----cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh---------------hh
Confidence 9999999986442 3344689999999999999998 7799998 4789887632111 12
Q ss_pred ccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 365 AHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 365 ~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
.....+.|.|+.|+-| ..+|++|++|+.| ++|..+..
T Consensus 311 htkRMq~V~~Vk~S~D-skyi~SGSdd~nv-RlWka~As 347 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYSMD-SKYIISGSDDGNV-RLWKAKAS 347 (433)
T ss_pred hHhhhheeeEEEEecc-ccEEEecCCCcce-eeeecchh
Confidence 2234558999999998 7788999999997 99986643
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=7.7e-19 Score=189.86 Aligned_cols=251 Identities=16% Similarity=0.240 Sum_probs=188.6
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcc-c-cc-------------cc-ccCCCCeeEEEEeeccccCCCCE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-D-IP-------------KQ-ELDNKSLVCMEFLSRSAVGDVPL 183 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~-~-~~-------------~~-~~~~~~I~~ia~~p~~~sp~~~~ 183 (1081)
.-.+.+++++|++++.+.++.++.+..|+..+++.. . ++ .. ..|.+.+.+++. ++|++|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av-----S~Dgky 216 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV-----SSDGKY 216 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-----cCCCcE
Confidence 678899999999985555555554556998776522 0 00 11 267788999999 799999
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccC
Q 001416 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1081)
Q Consensus 184 l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~ 263 (1081)
|++|..|..|.|||.++.+.++.+. +|.+.|.+++ |-.....++++|.|++|++|+++....+. ++.+|.
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~---fr~gt~~lys~s~Drsvkvw~~~~~s~ve------tlyGHq 286 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLA---FRKGTSELYSASADRSVKVWSIDQLSYVE------TLYGHQ 286 (479)
T ss_pred EEecCCCceEEEecCcccchhhccc-ccccceeeee---eecCccceeeeecCCceEEEehhHhHHHH------HHhCCc
Confidence 9999999999999999999999987 9999999998 56777789999999999999998765433 478999
Q ss_pred CcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCce--EEEec
Q 001416 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIE 341 (1081)
Q Consensus 264 ~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~~--IWdi~ 341 (1081)
+.|.++.-.. -...+-.|+.|+++++|++..-..+ + ..+|.+.+-|++|-.+..+++||.+|. +|++-
T Consensus 287 d~v~~IdaL~---reR~vtVGgrDrT~rlwKi~eesql--i-----frg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 287 DGVLGIDALS---RERCVTVGGRDRTVRLWKIPEESQL--I-----FRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred cceeeechhc---ccceEEeccccceeEEEecccccee--e-----eeCCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 9999998875 5555666669999999999543322 1 368888999999999999999999984 79887
Q ss_pred cCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 342 HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
.... .....+.......+ ... .+. .+|++++..|. ..++|+|+.+|.| ++|-+.
T Consensus 357 KKkp-lf~~~~AHgv~~~~-~~~-~~~-~Witsla~i~~-sdL~asGS~~G~v-rLW~i~ 410 (479)
T KOG0299|consen 357 KKKP-LFTSRLAHGVIPEL-DPV-NGN-FWITSLAVIPG-SDLLASGSWSGCV-RLWKIE 410 (479)
T ss_pred ccCc-eeEeeccccccCCc-ccc-ccc-cceeeeEeccc-CceEEecCCCCce-EEEEec
Confidence 5211 11111110000000 001 112 38999999996 8999999999996 999755
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.7e-18 Score=178.98 Aligned_cols=243 Identities=14% Similarity=0.211 Sum_probs=185.1
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCC--CeEEEeecCCCCCce
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKL--EKLAEGELEHKGKPT 79 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~--~~lasg~~d~~~~~~ 79 (1081)
+-.|..|.+.|++++.+ ++++|||+.|-+|+|||..+...+..+- .|...+..+ .+.. ..|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~s-------- 104 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGS-------- 104 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeec--------
Confidence 45688999999999998 8999999999999999999988887776 344555554 2222 2555554
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccc
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~ 158 (1081)
.||.|.+|+...-.+ ...+..| ...|+.++.+|.++ +..+.+.|+.+ .||+.+++...+.
T Consensus 105 -------------dDG~i~iw~~~~W~~----~~slK~H-~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 105 -------------DDGHIIIWRVGSWEL----LKSLKAH-KGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred -------------CCCcEEEEEcCCeEE----eeeeccc-ccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceee
Confidence 599999999887653 5677778 55599999999998 55555555555 5999988654433
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCc
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~ 238 (1081)
.+. ...+.+.| +|.|.+++.+..++ |-+|.+.+-.....+. ....+.|+.| -++..|++|+.|+.
T Consensus 166 ~L~---~~at~v~w-----~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~--~~~r~l~~~~----l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 166 NLK---NKATLVSW-----SPQGDHFVVSGRNK-IDIYQLDNASVFREIE--NPKRILCATF----LDGSELLVGGDNEW 230 (362)
T ss_pred ccC---CcceeeEE-----cCCCCEEEEEeccE-EEEEecccHhHhhhhh--ccccceeeee----cCCceEEEecCCce
Confidence 222 23344999 67899888887765 8899988766665553 3355677763 36778999999999
Q ss_pred EEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC
Q 001416 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1081)
Q Consensus 239 V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~ 298 (1081)
|++||.++.. +...+.+|+..|.++.+... +++.+|+|+|.||.|+|||++..
T Consensus 231 i~~~D~ds~~------~~~~~~AH~~RVK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ISLKDTDSDT------PLTEFLAHENRVKDIASYTN-PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCCCc------cceeeecchhheeeeEEEec-CCceEEEEeccCceEEEEEcccc
Confidence 9999998866 44457899999999986431 37789999999999999999865
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.2e-17 Score=173.78 Aligned_cols=251 Identities=15% Similarity=0.136 Sum_probs=182.6
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC--CCeEEEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS--DGVIRVLS 197 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~--Dg~I~lwd 197 (1081)
...|.++.|+++|..++++..+|.+.+||..+++ .+.....+.-.+..+.|. .....++.++. |.+||..+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~--~~~ti~skkyG~~~~~Ft-----h~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK--QVKTINSKKYGVDLACFT-----HHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc--eeeEeecccccccEEEEe-----cCCceEEEccCCCCCceEEEE
Confidence 5578999999999966666666677789998874 444555666678888883 34445555555 88999999
Q ss_pred cCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCC
Q 001416 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1081)
Q Consensus 198 ~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~ 277 (1081)
+.+.+.++.|. ||...|.+++ .+|-++.|+|+|.|++|++||++..++..- +. ..+-..++|.| .
T Consensus 87 l~dNkylRYF~-GH~~~V~sL~---~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------l~--~~~~pi~AfDp---~ 151 (311)
T KOG1446|consen 87 LHDNKYLRYFP-GHKKRVNSLS---VSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------LN--LSGRPIAAFDP---E 151 (311)
T ss_pred eecCceEEEcC-CCCceEEEEE---ecCCCCeEEecccCCeEEeeEecCCCCceE------Ee--cCCCcceeECC---C
Confidence 99999999997 9999999998 688889999999999999999998775442 12 22234579999 9
Q ss_pred CCEEEEEECCCeEEEEECCCC--ceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccc
Q 001416 278 SPQLITIGADKTLAIWDTVSF--KELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPL 352 (1081)
Q Consensus 278 ~~~Lvsgs~Dg~V~iWDl~t~--~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~ 352 (1081)
|-++|++.....|++||+++- .+.+++... .........+.|+|||+.| .+...+ .+.|.-.+
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G--------- 219 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG--------- 219 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---------
Confidence 999999998889999999864 344444221 1334567799999999965 444445 34444332
Q ss_pred cccCCCCCCeEEccCCCc--cEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCC
Q 001416 353 CELSSLVPPQVLAHHKKL--RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTP 412 (1081)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~--~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~ 412 (1081)
....++..+... ---..+|+|+ +..+.+|++||.| .+|+.++...++....+
T Consensus 220 ------~~~~tfs~~~~~~~~~~~a~ftPd-s~Fvl~gs~dg~i-~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 220 ------TVKSTFSGYPNAGNLPLSATFTPD-SKFVLSGSDDGTI-HVWNLETGKKVAVLRGP 273 (311)
T ss_pred ------cEeeeEeeccCCCCcceeEEECCC-CcEEEEecCCCcE-EEEEcCCCcEeeEecCC
Confidence 122233333221 1145689998 7778999999997 99999877776666544
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=3.8e-18 Score=174.22 Aligned_cols=310 Identities=17% Similarity=0.228 Sum_probs=209.4
Q ss_pred eeCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 6 AFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~-g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
.-+-|.+.|+++...+. |+++++|+.||.|.|||++..... +... +++
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~---e~s~------------li~---------------- 86 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY---EASG------------LIA---------------- 86 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccch---hhcc------------cee----------------
Confidence 34579999999999995 679999999999999999753210 0000 000
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~ 163 (1081)
..+ |. ...+...+| .-.|.++.|-|-...++.+++-|+.+ +||.+|.+.... + .-
T Consensus 87 ----------k~~---------c~-v~~~h~~~H-ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~--F-~m 142 (397)
T KOG4283|consen 87 ----------KHK---------CI-VAKQHENGH-KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD--F-KM 142 (397)
T ss_pred ----------hee---------ee-ccccCCccc-eeeeeeeEEeeecCceeecccccceEEEeecccceeeEE--e-ec
Confidence 000 00 001122233 55678888888777789999999888 599998653322 2 23
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd 243 (1081)
.+.|++-+++|.. ....++|+|..|-.|++.|+.+|.+.+.+. ||.+.|.++.| .+...-.|++||.||.||+||
T Consensus 143 e~~VYshamSp~a--~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~W--sp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 143 EGKVYSHAMSPMA--MSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEW--SPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred CceeehhhcChhh--hcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEe--ccCceeEEEecCCCceEEEEE
Confidence 4678888887763 346789999999999999999999999998 99999999998 366667899999999999999
Q ss_pred cCCCC-cccc-------cccc-eeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCC
Q 001416 244 ADHGQ-DSRE-------LVPK-LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1081)
Q Consensus 244 ~~~~~-~~~~-------~~~~-~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~ 314 (1081)
++... +... ..|. .+-.+|.+.|++++|.. ++.++++++.|..+++|+..+|+...+ +... ..|.
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS---d~~~l~~~gtd~r~r~wn~~~G~ntl~--~~g~-~~~n 291 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS---DARYLASCGTDDRIRVWNMESGRNTLR--EFGP-IIHN 291 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecc---cchhhhhccCccceEEeecccCccccc--cccc-cccc
Confidence 98641 2110 0111 12457999999999998 999999999999999999988764221 1111 1121
Q ss_pred CCeEEEee---cCCCCEEE-EECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEE
Q 001416 315 VASWCHPR---APNLDILT-CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1081)
Q Consensus 315 ~~v~~v~~---spd~~lls-~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatg 388 (1081)
... ..++ +-+...++ --.|+. ++.+-. +..+..+..|.+ +|.|.++.|+ =....+|
T Consensus 292 ~~~-~~~~~~~~~~s~vfv~~p~~~~lall~~~s---------------gs~ir~l~~h~k-~i~c~~~~~~-fq~~~tg 353 (397)
T KOG4283|consen 292 QTT-SFAVHIQSMDSDVFVLFPNDGSLALLNLLE---------------GSFVRRLSTHLK-RINCAAYRPD-FEQCFTG 353 (397)
T ss_pred ccc-cceEEEeecccceEEEEecCCeEEEEEccC---------------ceEEEeeecccc-eeeEEeecCc-hhhhhcc
Confidence 111 1111 11111111 111222 233222 444556777866 9999999998 4445899
Q ss_pred ECCCeEEEEeCC
Q 001416 389 TNVGVIISEFDP 400 (1081)
Q Consensus 389 s~dG~Il~iwd~ 400 (1081)
..|+.| ..|-+
T Consensus 354 ~~d~ni-~~w~p 364 (397)
T KOG4283|consen 354 DMNGNI-YMWSP 364 (397)
T ss_pred ccCCcc-ccccc
Confidence 999997 78864
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=182.90 Aligned_cols=269 Identities=19% Similarity=0.222 Sum_probs=180.6
Q ss_pred eCCCCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 7 FRPTNDKIVKIQLHPTH--PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 7 l~gH~~~V~~lafsp~g--~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..+|.+.++.+.-++-+ .+.++=+..|.|+|||+.. .++.+....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~------------------------------- 193 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAP--HLNALSEPG------------------------------- 193 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchh--hhhhhcCcc-------------------------------
Confidence 34677777777777754 4777778999999999853 112111000
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCe-EEEEEecCcEEEEEecCCCcc-ccccccc
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRH-FLVICCVNKAIFLDLVTMRGR-DIPKQEL 162 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~-~l~s~s~d~~i~wd~~t~~~~-~~~~~~~ 162 (1081)
..+ .+ .....+.+..+| ...=.+++|||-... ++..-+..++..|...++... ....+..
T Consensus 194 ~~~-----~~------------s~~~Pl~t~~gh-k~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g 255 (440)
T KOG0302|consen 194 LEV-----KD------------SEFRPLFTFNGH-KGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG 255 (440)
T ss_pred ccc-----cc------------cccCceEEeccc-CccceeeecccccccccccCccccceEeeeeccCceeecCccccc
Confidence 000 00 001123333444 333478899983222 454556677778988775422 2223456
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
|...|-.++|+| .....|++||.||+|+|||++.+ +....+...|.+.|+.+.| +....+|++|+.||+++|
T Consensus 256 H~~SVEDLqWSp----tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW---nr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 256 HTKSVEDLQWSP----TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW---NRREPLLASGGDDGTLSI 328 (440)
T ss_pred cccchhhhccCC----ccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc---cCCcceeeecCCCceEEE
Confidence 999999999965 24568999999999999999987 2222223589999999997 555559999999999999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCce-----------eeEecCCCcc
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-----------LRRIKPVPKL 310 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~-----------~~~~~~~~~~ 310 (1081)
||+++-+.- .|..+++-|..+|+++.|+| .+...|+++|.|.+|.|||+..-.- ++.+ |.+-+
T Consensus 329 wDLR~~~~~---~pVA~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl-PpQLL 402 (440)
T KOG0302|consen 329 WDLRQFKSG---QPVATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL-PPQLL 402 (440)
T ss_pred EEhhhccCC---CcceeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC-CceeE
Confidence 999875533 36677899999999999999 4778999999999999999853221 1111 11112
Q ss_pred ccCC--CCeEEEeecCCCC--EEEEECCc-eEEE
Q 001416 311 ACHS--VASWCHPRAPNLD--ILTCVKDS-HIWA 339 (1081)
Q Consensus 311 ~~h~--~~v~~v~~spd~~--lls~s~D~-~IWd 339 (1081)
--|. ..+.-+.||++.+ +++.+.|| .||.
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 2342 2566788998765 66778887 5764
No 129
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=188.74 Aligned_cols=266 Identities=15% Similarity=0.175 Sum_probs=188.5
Q ss_pred cCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccc--c-cccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 117 SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD--I-PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 117 ~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~--~-~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
.|+...|.++++.|.|. .|++|+-|..+ +||.+.+.... . .........|++++| ++.+..|++.+....
T Consensus 164 ~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y-----s~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY-----SVTGDQILVVSGSAQ 237 (641)
T ss_pred cCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeee-----cCCCCeEEEEecCcc
Confidence 45577899999999998 67777777777 59998654221 1 112345578999999 788999999999999
Q ss_pred EEEEEcCCCeEEEEE-----------ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecc
Q 001416 193 IRVLSMISWKLVRRY-----------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1081)
Q Consensus 193 I~lwd~~~~~~~~~~-----------~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~ 261 (1081)
.+|+|-...+.+... +.||...++|.+|. +.....|+|++.||++|+||++..+............+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~wh--P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWH--PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccc--cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 999996544433322 34899999999984 66677999999999999999987653322111111234
Q ss_pred cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC--CeEEEeecCCCCEE-EEECCc--e
Q 001416 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV--ASWCHPRAPNLDIL-TCVKDS--H 336 (1081)
Q Consensus 262 h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~--~v~~v~~spd~~ll-s~s~D~--~ 336 (1081)
..-++++++|+| ++++|++|+.||.|.+||..+...--.+ ..-..|.. .|+|+.||+||++| +-|.|+ +
T Consensus 316 ~Rv~~tsC~~nr---dg~~iAagc~DGSIQ~W~~~~~~v~p~~---~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 316 KRVPVTSCAWNR---DGKLIAAGCLDGSIQIWDKGSRTVRPVM---KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred cccCceeeecCC---CcchhhhcccCCceeeeecCCcccccce---EeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 455789999999 9999999999999999998543211111 11256766 89999999999966 678886 7
Q ss_pred EEEeccCCcccccccccccCCCCCCeEEcc-CCCccEEEEEEeCCCCeEEEEEEC------CCeEEEEeCCCCCCCCccc
Q 001416 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTN------VGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 337 IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~V~~l~~sp~~~~llatgs~------dG~Il~iwd~~~~~~~~~~ 409 (1081)
+||++... +|+.+..+ ....+-+.++|+|+ ..+|++|+. .|. |.++|..+...+..+
T Consensus 390 vWDLrq~k--------------kpL~~~tgL~t~~~~tdc~FSPd-~kli~TGtS~~~~~~~g~-L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 390 VWDLRQFK--------------KPLNVRTGLPTPFPGTDCCFSPD-DKLILTGTSAPNGMTAGT-LFFFDRMTLDTVYKI 453 (641)
T ss_pred eeeccccc--------------cchhhhcCCCccCCCCccccCCC-ceEEEecccccCCCCCce-EEEEeccceeeEEEe
Confidence 99998631 11111111 01114456899998 788899854 465 588888877777666
Q ss_pred CCC
Q 001416 410 PTP 412 (1081)
Q Consensus 410 ~~~ 412 (1081)
...
T Consensus 454 ~i~ 456 (641)
T KOG0772|consen 454 DIS 456 (641)
T ss_pred cCC
Confidence 543
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=185.80 Aligned_cols=242 Identities=17% Similarity=0.146 Sum_probs=184.0
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
+.+|.|-.+.|++++|.+++..+++++.|+.+++|++...+...++.. |
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-H------------------------------ 260 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-H------------------------------ 260 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-c------------------------------
Confidence 456778889999999999999999999999999999988776666663 3
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~ 162 (1081)
.+.|+++.|..... -+++|+.|..+. ||+.... +. +...
T Consensus 261 ------------------------------------tdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~--C~-kt~l 300 (459)
T KOG0288|consen 261 ------------------------------------TDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY--CS-KTVL 300 (459)
T ss_pred ------------------------------------ccceeeehhhcccc-ceeeccccchhhhhhhhhhh--ee-cccc
Confidence 33345555544333 277777777775 8877642 21 2223
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
....+..|.. ....+++|..|++|++||.++..+..... .+ +.|+++. .++++..+.+++.|.++.+.
T Consensus 301 ~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~---ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 301 PGSQCNDIVC-------SISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLD---LSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred ccccccceEe-------cceeeeecccccceEEEeccCCceeeEee-cC-cceeeEe---eccCCeEEeeecCCCceeee
Confidence 3445555655 24568899999999999999999998886 44 4999998 69999999999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC-CeEEEe
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-ASWCHP 321 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~-~v~~v~ 321 (1081)
|+++......+.......+|+ .+.+.|+| ++.|+++||.||.|+||++.++++...+.. .++. .|++++
T Consensus 369 DlRt~eI~~~~sA~g~k~asD--wtrvvfSp---d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-----s~s~~aI~s~~ 438 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASD--WTRVVFSP---DGSYVAAGSADGSVYIWSVFTGKLEKVLSL-----STSNAAITSLS 438 (459)
T ss_pred ecccccEEEEeeccccccccc--cceeEECC---CCceeeeccCCCcEEEEEccCceEEEEecc-----CCCCcceEEEE
Confidence 999877554433222223443 78999999 999999999999999999999998877632 2233 799999
Q ss_pred ecCCCCE-EEEECCc--eEE
Q 001416 322 RAPNLDI-LTCVKDS--HIW 338 (1081)
Q Consensus 322 ~spd~~l-ls~s~D~--~IW 338 (1081)
|+|.|.. ++++.+. .+|
T Consensus 439 W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EcCCCchhhcccCCcceEec
Confidence 9999995 4777664 466
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.3e-17 Score=181.61 Aligned_cols=272 Identities=17% Similarity=0.203 Sum_probs=202.6
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEE
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~ 172 (1081)
.||.|.+|++..+-. ......++....|.+++|++.++ ++.++.++.+.-||+.+.+ ...........|++++.
T Consensus 45 t~g~IEiwN~~~~w~---~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk--~~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWF---LEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLK--QKYNIDSNGGAIWSIAI 118 (691)
T ss_pred cCCcEEEEccCCCce---eeEEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCc--eeEEecCCCcceeEEEe
Confidence 699999999988654 34455667788999999997665 8888888888889999874 44456777889999999
Q ss_pred eeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEE-ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 001416 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1081)
Q Consensus 173 ~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~-~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~ 251 (1081)
+|.+..++.|++||.+..++...++..... ..-.++.|.++.| +|++..+++|+.||.|++||...++.+.
T Consensus 119 -----~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 119 -----NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred -----CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe---cCCccEEEecccCceEEEEEcCCCceEE
Confidence 577899999999998888888776655432 2245699999995 8999999999999999999999887554
Q ss_pred ccc-cceeecc-cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-E
Q 001416 252 ELV-PKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-I 328 (1081)
Q Consensus 252 ~~~-~~~~l~~-h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-l 328 (1081)
... ....+.. -.--|+++.|-. ...|++|..-|+|.+||...+..++.+ ..|...|.|++..+++. +
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lr----d~tI~sgDS~G~V~FWd~~~gTLiqS~------~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLR----DSTIASGDSAGTVTFWDSIFGTLIQSH------SCHDADVLALAVADNEDRV 260 (691)
T ss_pred EeeecccccccCCceEEEEEEEee----cCcEEEecCCceEEEEcccCcchhhhh------hhhhcceeEEEEcCCCCeE
Confidence 110 0111111 223467777764 358999999999999999999987765 78999999999999977 4
Q ss_pred EEEECCceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 329 LTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 329 ls~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
+++|.|++|..+...+...+ | +.......|.. .|.+++..++ .+.+|+.|+.+ .+--.++
T Consensus 261 fsaGvd~~ii~~~~~~~~~~----w-----v~~~~r~~h~h-dvrs~av~~~---~l~sgG~d~~l-~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSE----W-----VINSRRDLHAH-DVRSMAVIEN---ALISGGRDFTL-AICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccc----e-----eeeccccCCcc-cceeeeeecc---eEEecceeeEE-EEccccc
Confidence 58889998877664322111 1 11112234555 8899998876 77999999996 5544444
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=192.78 Aligned_cols=269 Identities=13% Similarity=0.144 Sum_probs=204.0
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCc
Q 001416 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1081)
Q Consensus 8 ~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~-~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~ 86 (1081)
.+|+..-+.|.|.|+|.+|.+++.||.|++|+...-. .-.++.. +...+..+......+++++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s--------------- 73 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGS--------------- 73 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEee---------------
Confidence 4899999999999999999999999999999976542 1112221 2233333444444555544
Q ss_pred eEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCC
Q 001416 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNK 165 (1081)
Q Consensus 87 V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~ 165 (1081)
.+++|..+.+..++. ......+.-+++.++|+-+|+ +++.|++|..+. .+.... .....+.+|..
T Consensus 74 ------~~~tv~~y~fps~~~-----~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~--s~~~~lrgh~a 139 (933)
T KOG1274|consen 74 ------EQNTVLRYKFPSGEE-----DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDS--SQEKVLRGHDA 139 (933)
T ss_pred ------ccceEEEeeCCCCCc-----cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEecccc--chheeecccCC
Confidence 689999999888763 333344466789999999998 888888888775 676654 35566889999
Q ss_pred CeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEec------c-cccceEEEEEeeeCCCCCEEEEEeCCCc
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------G-HKGSISCLMTFMASSGEALLVSGGSDGL 238 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~------~-h~~~V~~l~w~~~s~d~~~l~sgs~Dg~ 238 (1081)
+|.++.| +|++.+||+.+.||.|++||+.++.+..++.. . ....+..++| +|++..|+..+.|++
T Consensus 140 pVl~l~~-----~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW---~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 140 PVLQLSY-----DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW---HPKGGTLAVPPVDNT 211 (933)
T ss_pred ceeeeeE-----cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeee---cCCCCeEEeeccCCe
Confidence 9999999 68999999999999999999998877766531 1 1334555665 788888888999999
Q ss_pred EEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeE
Q 001416 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1081)
Q Consensus 239 V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~ 318 (1081)
|++|+..++.....+ ....|...+.++.|+| +|.||++++.||.|.|||.++... ......|+
T Consensus 212 Vkvy~r~~we~~f~L----r~~~~ss~~~~~~wsP---nG~YiAAs~~~g~I~vWnv~t~~~----------~~~~~~Vc 274 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKL----RDKLSSSKFSDLQWSP---NGKYIAASTLDGQILVWNVDTHER----------HEFKRAVC 274 (933)
T ss_pred EEEEccCCceeheee----cccccccceEEEEEcC---CCcEEeeeccCCcEEEEecccchh----------ccccceeE
Confidence 999999988755432 2234555699999999 899999999999999999987221 22245789
Q ss_pred EEeecCCCCEEEE
Q 001416 319 CHPRAPNLDILTC 331 (1081)
Q Consensus 319 ~v~~spd~~lls~ 331 (1081)
|++|.|+..-++.
T Consensus 275 ~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 275 CEAWKPNANAITL 287 (933)
T ss_pred EEecCCCCCeeEE
Confidence 9999999886654
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=8.1e-18 Score=181.72 Aligned_cols=300 Identities=16% Similarity=0.205 Sum_probs=202.0
Q ss_pred eeeCCCCCceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeee
Q 001416 5 KAFRPTNDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~--~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l 82 (1081)
...+-|.++|++++|||..+ ++|+|+..|.|-+||+.+.+...
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~----------------------------------- 224 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK----------------------------------- 224 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-----------------------------------
Confidence 34556889999999999865 89999999999999996322100
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccc
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQE 161 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~ 161 (1081)
|+. ..+..| ..+|.++.|+|.....+.+.+.|+.++ -|++......+....
T Consensus 225 -----------d~v----------------~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 225 -----------DGV----------------YLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred -----------Cce----------------EEeccC-CccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence 110 111222 556889999998777788888888886 588876555554444
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeE-EEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~-~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
.....+..+.| +.+...++.|..=|...+||.++... ...+. -|...|.+++ + ++-...+|+|+|.|++.+
T Consensus 277 ~d~~~fs~~d~-----~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~-~-NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 277 TDNIWFSSLDF-----SAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVA-L-NPVCPWFLATASLDQTAK 348 (498)
T ss_pred ccceeeeeccc-----cCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceee-c-CCCCchheeecccCccee
Confidence 45566777888 55667778887778999999987654 44444 7888999998 3 666778999999999999
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECC----CCceeeEecCCCccccCCC-
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV----SFKELRRIKPVPKLACHSV- 315 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~----t~~~~~~~~~~~~~~~h~~- 315 (1081)
|||++.-....+ |......|...|+++.|+| ++-.|+|.+.|..|+|||.. .-.+..++.. -..+..
T Consensus 349 IWD~R~l~~K~s--p~lst~~HrrsV~sAyFSP---s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H---n~~t~Rw 420 (498)
T KOG4328|consen 349 IWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSP---SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH---NNRTGRW 420 (498)
T ss_pred eeehhhhcCCCC--cceecccccceeeeeEEcC---CCCceEeeccCCceEEeecccccccCCccceeec---cCccccc
Confidence 999987554333 3445567999999999999 44459999999999999983 2233333311 011111
Q ss_pred -CeEEEeecCCCCEEEEECCc---eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEE-EEEeCCCCeEEEEEEC
Q 001416 316 -ASWCHPRAPNLDILTCVKDS---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC-MVAHSLQPHLVATGTN 390 (1081)
Q Consensus 316 -~v~~v~~spd~~lls~s~D~---~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~-l~~sp~~~~llatgs~ 390 (1081)
......|.|+..++..+.-. .|+|-+.. ..+..+.......|.+ ..|||.+..+++.|+.
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~---------------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG---------------QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred ccchhheeCCCccEEEEeccCcceeEEcCCCC---------------EEeeeccCccccccccceeecccccceeccCCc
Confidence 23467899988888766543 35554431 1111221111113333 4799984446555556
Q ss_pred CCeEEEEeC
Q 001416 391 VGVIISEFD 399 (1081)
Q Consensus 391 dG~Il~iwd 399 (1081)
.|.| ++|.
T Consensus 486 ~Gki-~vft 493 (498)
T KOG4328|consen 486 SGKI-YVFT 493 (498)
T ss_pred cceE-EEEe
Confidence 6664 7875
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=171.42 Aligned_cols=291 Identities=16% Similarity=0.188 Sum_probs=200.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEE
Q 001416 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1081)
Q Consensus 13 ~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f 92 (1081)
-.+++.|+|||..|++-+.|..+++|++...-.-.... .. . .+ ..-..++...|..|...+|
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~-~~----~--------~~-----~~~~~~r~~eg~tvydy~w 112 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD-GP----L--------NF-----SKHLSYRYQEGETVYDYCW 112 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCC-Cc----c--------cc-----ccceeEEeccCCEEEEEEe
Confidence 35788999999999999999999999986321100000 00 0 00 0000011111222222222
Q ss_pred ------------------eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEe-cCCC
Q 001416 93 ------------------YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDL-VTMR 153 (1081)
Q Consensus 93 ------------------~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~-~t~~ 153 (1081)
.+.-|++||..+++.............-..-.+++|+|||. .|.+|-...+.++|. +.++
T Consensus 113 Ys~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 113 YSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred eeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeecccceEEEeeccCCCC
Confidence 68899999999998533211111100112346899999998 667777777778998 5554
Q ss_pred cccccccccC-----CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCC
Q 001416 154 GRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA 228 (1081)
Q Consensus 154 ~~~~~~~~~~-----~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~ 228 (1081)
...+.....+ .+-|.|++|+| .+...++.|+....+-|+....+.++..+- +|.+.|+.++| .++|+
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP----~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~---~edGn 263 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSP----MDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQW---CEDGN 263 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccC----CCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEe---ccCcC
Confidence 3333332333 56789999976 355689999999999999998888888876 99999999995 78999
Q ss_pred EEEEEeC-CCcEEEEEcCCCCcccccccceeecccCC-cEEEEEEeeecCCCCEEEEEECCCeEEEEECCC-CceeeEec
Q 001416 229 LLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-FKELRRIK 305 (1081)
Q Consensus 229 ~l~sgs~-Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~-~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t-~~~~~~~~ 305 (1081)
.|.+|+. |-.|-.||++.... +...|..|.. .-..|-|.- .+++++|++|+.||.|++||+++ +..+..
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDl-d~~~~~LasG~tdG~V~vwdlk~~gn~~sv-- 335 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDL-DPKGEILASGDTDGSVRVWDLKDLGNEVSV-- 335 (406)
T ss_pred eecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEec-CCCCceeeccCCCccEEEEecCCCCCcccc--
Confidence 9999885 77899999987542 4455677755 223344432 12899999999999999999987 554443
Q ss_pred CCCccccCCCCeEEEeecCCCCEEEEECCceEEEecc
Q 001416 306 PVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH 342 (1081)
Q Consensus 306 ~~~~~~~h~~~v~~v~~spd~~lls~s~D~~IWdi~~ 342 (1081)
...|+..++.++++|--++++.+...+++...+
T Consensus 336 ----~~~~sd~vNgvslnP~mpilatssGqr~f~~~~ 368 (406)
T KOG2919|consen 336 ----TGNYSDTVNGVSLNPIMPILATSSGQRIFKYPK 368 (406)
T ss_pred ----cccccccccceecCcccceeeeccCceeecCCC
Confidence 367888899999999988998877778887654
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2e-17 Score=171.08 Aligned_cols=242 Identities=18% Similarity=0.267 Sum_probs=187.0
Q ss_pred ccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 114 ~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
....| .+.+++++. +++ ++++|+.|..+ +||+++. ........|.+.|+++.|.|. .....|++|++||.
T Consensus 38 ~~~aH-~~sitavAV--s~~-~~aSGssDetI~IYDm~k~--~qlg~ll~HagsitaL~F~~~---~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 38 AFSAH-AGSITALAV--SGP-YVASGSSDETIHIYDMRKR--KQLGILLSHAGSITALKFYPP---LSKSHLLSGSDDGH 108 (362)
T ss_pred ccccc-ccceeEEEe--cce-eEeccCCCCcEEEEeccch--hhhcceeccccceEEEEecCC---cchhheeeecCCCc
Confidence 34445 678888888 455 77777766655 6999875 355557788999999999542 12238999999999
Q ss_pred EEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEe
Q 001416 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1081)
Q Consensus 193 I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fs 272 (1081)
|.+|+...|.++..+. +|.+.|+.++ .+|.+++-++.+.|+.++.||+-.|+.-.. ..+. | .-+.+.|+
T Consensus 109 i~iw~~~~W~~~~slK-~H~~~Vt~ls---iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v----~~L~-~--~at~v~w~ 177 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLK-AHKGQVTDLS---IHPSGKLALSVGGDQVLRTWNLVRGRVAFV----LNLK-N--KATLVSWS 177 (362)
T ss_pred EEEEEcCCeEEeeeec-ccccccceeE---ecCCCceEEEEcCCceeeeehhhcCcccee----eccC-C--cceeeEEc
Confidence 9999999999999998 9999999998 699999999999999999999988874332 1122 2 23449999
Q ss_pred eecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCc--eEEEeccCCcccccc
Q 001416 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTR 350 (1081)
Q Consensus 273 p~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~--~IWdi~~~~~~~~~~ 350 (1081)
| .|.+++.++.+ .|-||.+.+.+....+. ....+.|+.|-..+.+++|+.|. ++||.++
T Consensus 178 ~---~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-------- 238 (362)
T KOG0294|consen 178 P---QGDHFVVSGRN-KIDIYQLDNASVFREIE-------NPKRILCATFLDGSELLVGGDNEWISLKDTDS-------- 238 (362)
T ss_pred C---CCCEEEEEecc-EEEEEecccHhHhhhhh-------ccccceeeeecCCceEEEecCCceEEEeccCC--------
Confidence 9 88988888765 47899998877665541 22456688888888788888875 6788875
Q ss_pred cccccCCCCCCeEEccCCCccEEEEE-EeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 351 PLCELSSLVPPQVLAHHKKLRVYCMV-AHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~V~~l~-~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
..+...+..|.. ||-.+. +......+|++.+.||.| ++||++..
T Consensus 239 -------~~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I-~vWd~~~~ 283 (362)
T KOG0294|consen 239 -------DTPLTEFLAHEN-RVKDIASYTNPEHEYLVTASSDGFI-KVWDIDME 283 (362)
T ss_pred -------Cccceeeecchh-heeeeEEEecCCceEEEEeccCceE-EEEEcccc
Confidence 455567778988 999998 433347899999999997 99998764
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.4e-17 Score=180.57 Aligned_cols=292 Identities=13% Similarity=0.094 Sum_probs=204.3
Q ss_pred EEeCCCcEEEEECCCCcEEEEEecCC-ccceEEeccC-CCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCC
Q 001416 28 TADASDHVSVWNWEHRQVIYELKAGG-VDQRRLVGAK-LEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRN 105 (1081)
Q Consensus 28 sgs~dg~I~IWd~~t~~~i~~~~~~~-~~~v~~vs~~-~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~ 105 (1081)
.++....++|||+...+....+..+. ..++..+... ...|++++. + .|..+++|.-...
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~------------~-------gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASM------------A-------GDKVMRIKEKDGK 67 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeec------------C-------CceeEEEecccCC
Confidence 33344479999998766555444221 1222222111 111333221 1 4788888876655
Q ss_pred ccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEE
Q 001416 106 RAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLV 184 (1081)
Q Consensus 106 ~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l 184 (1081)
...........+.....|.+..+ . .++++|+.++++ +||++.. .....+..|.+.|+|+.| +-...+|
T Consensus 68 ~~~Vp~~~k~~gd~~~Cv~~~s~---S-~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~Y-----N~~Deyi 136 (673)
T KOG4378|consen 68 TPEVPRVRKLTGDNAFCVACASQ---S-LYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDY-----NNTDEYI 136 (673)
T ss_pred CCccceeeccccchHHHHhhhhc---c-eeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEe-----cCCccee
Confidence 33222233333332223333334 3 477777877777 6999842 455667889999999999 5678899
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCC
Q 001416 185 AFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1081)
Q Consensus 185 ~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~ 264 (1081)
|+++..|.|.|..+.+++....|..+....|.-+. | .+....+|.+++.+|.|.+||+........+ .+.|..
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~-y-s~skr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~HsA 209 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR-Y-SPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHSA 209 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEee-c-ccccceeeEeeccCCeEEEEeccCCCcccch-----hhhccC
Confidence 99999999999999999888888644455666666 2 3344557788999999999999887755543 578999
Q ss_pred cEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEE-EECCceE--EEec
Q 001416 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT-CVKDSHI--WAIE 341 (1081)
Q Consensus 265 ~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls-~s~D~~I--Wdi~ 341 (1081)
+...++|+| .+..+|++.+.|+.|.+||+...+...++ ....+...++|.++|.+|+ |+..|+| ||++
T Consensus 210 P~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~~s~~~l-------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 210 PCRGICFSP--SNEALLVSVGYDKKINIYDIRSQASTDRL-------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CcCcceecC--CccceEEEecccceEEEeeccccccccee-------eecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 999999999 47789999999999999999987766554 2345667899999999885 5556775 7777
Q ss_pred cCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC
Q 001416 342 HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1081)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~ 380 (1081)
.. ..|+.++..|.. .|++++|.|.
T Consensus 281 ~~--------------k~Pv~v~sah~~-sVt~vafq~s 304 (673)
T KOG4378|consen 281 ST--------------KAPVAVRSAHDA-SVTRVAFQPS 304 (673)
T ss_pred cC--------------CCCceEeeeccc-ceeEEEeeec
Confidence 52 567778888888 7999999997
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.4e-18 Score=198.12 Aligned_cols=240 Identities=14% Similarity=0.197 Sum_probs=186.5
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CcEEEEEecCCccceEEe---ccCCCeEEEeecCCCCCceeeecCCc
Q 001416 14 IVKIQLHP-THPWLVTADASDHVSVWNWEH---RQVIYELKAGGVDQRRLV---GAKLEKLAEGELEHKGKPTEAMRGGS 86 (1081)
Q Consensus 14 V~~lafsp-~g~~Lasgs~dg~I~IWd~~t---~~~i~~~~~~~~~~v~~v---s~~~~~lasg~~d~~~~~~~~l~g~~ 86 (1081)
+..|.|+. +.++|||++.+|.|.+||+.. .+.+..|.. |...+..+ +..-..|.+|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGS--------------- 153 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGS--------------- 153 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecC---------------
Confidence 34566764 356999999999999999986 444445553 33444433 44455666654
Q ss_pred eEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCC
Q 001416 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNK 165 (1081)
Q Consensus 87 V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~ 165 (1081)
.||+|++||+...+. ..+..+. ...|+.++|+|.....|+++.+++.+. ||++..+ ++...+.+|.+
T Consensus 154 ------QDg~vK~~DlR~~~S----~~t~~~n-SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~~k~~AH~G 221 (839)
T KOG0269|consen 154 ------QDGTVKCWDLRSKKS----KSTFRSN-SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCEKKLTAHNG 221 (839)
T ss_pred ------CCceEEEEeeecccc----ccccccc-chhhhceeeccCCCceEEEecCCceEEEeeccCch-hHHHHhhcccC
Confidence 599999999998875 3334443 667999999998888999999999985 9999765 56777899999
Q ss_pred CeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe--EEEEEecccccceEEEEEeeeCCCCCEEEEEeC--CCcEEE
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK--LVRRYTGGHKGSISCLMTFMASSGEALLVSGGS--DGLLIL 241 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~--~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~--Dg~V~v 241 (1081)
+|.|+.| +|++.+||||+.|++|+|||+.+.+ .+.++ ....+|.+++| -+....+|++++. |-.|+|
T Consensus 222 pV~c~nw-----hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkW--RP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 222 PVLCLNW-----HPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKW--RPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred ceEEEee-----cCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeee--ccCccchhhhhhccccceEEE
Confidence 9999999 6789999999999999999998653 33444 36689999998 3555677888775 889999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCC
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t 297 (1081)
||++..- .|..++..|+..++.++|.. .+...|.+++.|++|..-.+++
T Consensus 293 WDvrRPY-----IP~~t~~eH~~~vt~i~W~~--~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 293 WDVRRPY-----IPYATFLEHTDSVTGIAWDS--GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred Eeecccc-----ccceeeeccCccccceeccC--CCceeeEeecCccHHHHhhhhc
Confidence 9998753 46778899999999999976 4778899999999987655544
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=2.3e-16 Score=171.82 Aligned_cols=353 Identities=16% Similarity=0.189 Sum_probs=229.9
Q ss_pred eeeCCCC-CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCC-----
Q 001416 5 KAFRPTN-DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKG----- 76 (1081)
Q Consensus 5 ~~l~gH~-~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~----- 76 (1081)
-.|.++. .-|.|++|.++|. ++||+.+|.|.||+..+.+..+... .|..++.++ -.+|..|- |+.|...
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~ 315 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD 315 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccc
Confidence 3455554 4589999999986 6799999999999998888888877 666777666 45555554 6543321
Q ss_pred -----Cceeee-cCCceEEEEEeCCeEEEEEcCC----CccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-
Q 001416 77 -----KPTEAM-RGGSVKQVNFYDDDVRFWQLWR----NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI- 145 (1081)
Q Consensus 77 -----~~~~~l-~g~~V~~v~f~Dg~IriWdl~~----~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i- 145 (1081)
+.+.+- .-|+++.++-..+.+.+=-.++ +...........+| ....+.++.+|+.+ .+++++.++.+
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~-q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSKN-QLLTCGQDKHVR 393 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCChh-heeeccCcceEE
Confidence 001110 0133333333222211100000 00000012233455 45778889999887 45555555554
Q ss_pred EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCC
Q 001416 146 FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS 225 (1081)
Q Consensus 146 ~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~ 225 (1081)
+|+-. .+.....-.+++.|++| +|.| .++.|+..|...+.|.++...+..-. . +.++++++ ++|
T Consensus 394 lW~~~-----k~~wt~~~~d~~~~~~f-----hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~---ysp 457 (626)
T KOG2106|consen 394 LWNDH-----KLEWTKIIEDPAECADF-----HPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVR---YSP 457 (626)
T ss_pred EccCC-----ceeEEEEecCceeEeec-----cCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEE---EcC
Confidence 69821 22223445678999999 5678 89999999999999999866665544 3 88999998 699
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEec
Q 001416 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1081)
Q Consensus 226 d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~ 305 (1081)
+|.+||.|+.|+.|.+|.+..+..... .. -+.|..+|+.++|++ |+++|.+-+.|-.|-.|.....+.....+
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~~y~--r~--~k~~gs~ithLDwS~---Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGRKYS--RV--GKCSGSPITHLDWSS---DSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCcEEE--Ee--eeecCceeEEeeecC---CCceEEeccCceEEEEEccccCcccceec
Confidence 999999999999999999987653221 11 123448999999999 99999999999999999554333222211
Q ss_pred CCC------------ccccCCCCeEEEeecCCCCEEEEECC-c--eEEEeccCCcccccccccccCCCCCCeEEccCCCc
Q 001416 306 PVP------------KLACHSVASWCHPRAPNLDILTCVKD-S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKL 370 (1081)
Q Consensus 306 ~~~------------~~~~h~~~v~~v~~spd~~lls~s~D-~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (1081)
.+. -...|...+..++.+.+.++++++.| + ++|...-. +...+...+.+|+.
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~------------s~rA~~he~~ghs~- 597 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS------------SPRAPSHEYGGHSS- 597 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC------------CCcccceeeccccc-
Confidence 111 01234456666777778888888777 4 45544321 11233446678888
Q ss_pred cEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 371 RVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 371 ~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
.|.+++|.-....++.+| .|..| ..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg-~D~Si-~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTG-KDTSI-MQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecC-CCceE-EEEEe
Confidence 999999998867776677 88886 79974
No 139
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=99.78 E-value=1.3e-20 Score=208.17 Aligned_cols=254 Identities=14% Similarity=0.089 Sum_probs=181.9
Q ss_pred eEEEEEeeccccCccccccccccccccc--cccCCCCCccccccCCCCCCCCCCCCCCCccEEEEeeccccccCCC-CCC
Q 001416 610 LLGVAYRTSRRISPIAATAISTIQSMPL--SGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGL-LPQ 686 (1081)
Q Consensus 610 ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~~~ 686 (1081)
++|-+|...-|.+-.+.|.|-|..|--+ .|+|.-.. .-.|..++..||||++ |++ .-+
T Consensus 102 ~iGk~~s~e~k~qq~e~WeiPFe~IsELeWlGSGaQGA-----------VF~Grl~netVAVKKV--------~elkETd 162 (904)
T KOG4721|consen 102 MIGKAYSTEHKQQQEELWEIPFEEISELEWLGSGAQGA-----------VFLGRLHNETVAVKKV--------RELKETD 162 (904)
T ss_pred HhccceeeehhhhhhhhccCCHHHhhhhhhhccCcccc-----------eeeeeccCceehhHHH--------hhhhhhh
Confidence 4555666566667788999999988776 44432221 1235567778888773 332 347
Q ss_pred cceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc-----eeeEeeeeeEeccCceEEEeeeCCccc
Q 001416 687 PEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG-----AVWHRRQLFVVTPTTIECVFVDAGVAA 756 (1081)
Q Consensus 687 ~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~-----~~w~~~~~~~~t~~~i~~~~~~~gm~~ 756 (1081)
+|++|=++|.|+.+|- .|-+|||||||++ |.|+.||.....- .+|. .-|+.||.|
T Consensus 163 IKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~-GqL~~VLka~~~itp~llv~Ws--------------k~IA~GM~Y 227 (904)
T KOG4721|consen 163 IKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQ-GQLYEVLKAGRPITPSLLVDWS--------------KGIAGGMNY 227 (904)
T ss_pred HHHHHhccCcceeeEeeeecCCceeEEeeecccc-ccHHHHHhccCccCHHHHHHHH--------------HHhhhhhHH
Confidence 8999999999999998 7999999999999 9999998764321 2342 246779999
Q ss_pred cchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccC
Q 001416 757 IDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEG 835 (1081)
Q Consensus 757 lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 835 (1081)
||...| |--|||-|.+|.-.=|+||+|||-..- ..+. .-.+.+.--.- |+|||+.+.. |
T Consensus 228 LH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e-~~~~--STkMSFaGTVa--------WMAPEvIrne--P------- 287 (904)
T KOG4721|consen 228 LHLHKIIHRDLKSPNILISYDDVVKISDFGTSKE-LSDK--STKMSFAGTVA--------WMAPEVIRNE--P------- 287 (904)
T ss_pred HHHhhHhhhccCCCceEeeccceEEeccccchHh-hhhh--hhhhhhhhhHh--------hhCHHHhhcC--C-------
Confidence 999999 999999999999999999999994321 0000 00111111112 9999997642 1
Q ss_pred CCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccccc
Q 001416 836 DDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYG 915 (1081)
Q Consensus 836 ~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 915 (1081)
..-+-|||||++.+.|+.+|.-||... + ..-.+-||-.+.|.| |+- -.|+.-..
T Consensus 288 --csEKVDIwSfGVVLWEmLT~EiPYkdV--d-------ssAIIwGVGsNsL~L--------------pvP-stcP~Gfk 341 (904)
T KOG4721|consen 288 --CSEKVDIWSFGVVLWEMLTGEIPYKDV--D-------SSAIIWGVGSNSLHL--------------PVP-STCPDGFK 341 (904)
T ss_pred --cccccceehhHHHHHHHHhcCCCcccc--c-------hheeEEeccCCcccc--------------cCc-ccCchHHH
Confidence 223468999999999999999999743 3 233456776663332 221 14777778
Q ss_pred cHHHHHhhhcccCcccHHHHHHHHHhcC
Q 001416 916 DSVSAVKWASRLGREHHDDLAQFMLGMG 943 (1081)
Q Consensus 916 ~~~~~~~~~~~~~r~~~~~i~~~l~~~~ 943 (1081)
-|++.||...|-.||.|.+|..-|.-.+
T Consensus 342 lL~Kqcw~sKpRNRPSFrqil~HldIa~ 369 (904)
T KOG4721|consen 342 LLLKQCWNSKPRNRPSFRQILLHLDIAS 369 (904)
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHhhcC
Confidence 8999999999999999999998887555
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=4e-16 Score=174.85 Aligned_cols=270 Identities=11% Similarity=0.106 Sum_probs=181.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEc
Q 001416 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1081)
Q Consensus 23 g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl 102 (1081)
+..++|++.|+.|++||..+++.+..+..+........+++++.++... + .++.|++||.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~-------------~-------~~~~v~~~d~ 60 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCA-------------S-------DSDTIQVIDL 60 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEE-------------C-------CCCeEEEEEC
Confidence 3578899999999999999999988887543222223377877664321 1 4789999999
Q ss_pred CCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCC
Q 001416 103 WRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDV 181 (1081)
Q Consensus 103 ~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~ 181 (1081)
.+++... ....+ ..+..++|+|+++.++++++.++.+ +||+.+.+ .+.... ....+.+++| +|++
T Consensus 61 ~~~~~~~----~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~-----~~dg 126 (300)
T TIGR03866 61 ATGEVIG----TLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAV-----SPDG 126 (300)
T ss_pred CCCcEEE----eccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEE-----CCCC
Confidence 8876422 11122 2245788999998777776655544 69998753 222222 2345688999 7899
Q ss_pred CEEEEEECCC-eEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEE-EeCCCcEEEEEcCCCCcccccccceee
Q 001416 182 PLVAFGSSDG-VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS-GGSDGLLILWSADHGQDSRELVPKLSL 259 (1081)
Q Consensus 182 ~~l~sgs~Dg-~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~s-gs~Dg~V~vWd~~~~~~~~~~~~~~~l 259 (1081)
.++++++.++ .+.+||..+++...... ......++. ++++++.|+. +..++.|++||+.+++....+.... .
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~---~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~ 200 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAE---FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-P 200 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEE---ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-c
Confidence 9999988775 56778998887776554 223446666 5888887754 4569999999999887544321000 0
Q ss_pred cccC--CcEEEEEEeeecCCCCEEE-EEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEE-CC
Q 001416 260 KAHD--GGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCV-KD 334 (1081)
Q Consensus 260 ~~h~--~~V~~v~fsp~~~~~~~Lv-sgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s-~D 334 (1081)
..+. .....++|+| ++++++ +.+.++.|.+||+++++.+..+ .+...+++++|+|+++.| +++ .+
T Consensus 201 ~~~~~~~~~~~i~~s~---dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTK---DGKTAFVALGPANRVAVVDAKTYEVLDYL-------LVGQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred ccccccCCccceEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEE-------EeCCCcceEEECCCCCEEEEEcCCC
Confidence 0011 1234688998 777754 4456778999999988876543 233468899999999976 433 34
Q ss_pred c--eEEEecc
Q 001416 335 S--HIWAIEH 342 (1081)
Q Consensus 335 ~--~IWdi~~ 342 (1081)
+ ++||+..
T Consensus 271 ~~i~v~d~~~ 280 (300)
T TIGR03866 271 NDVSVIDVAA 280 (300)
T ss_pred CeEEEEECCC
Confidence 4 6899886
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-17 Score=181.61 Aligned_cols=230 Identities=14% Similarity=0.140 Sum_probs=176.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEE
Q 001416 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1081)
Q Consensus 11 ~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v 90 (1081)
.+.|.|++-+|.|.||+.|...|.|++|.+.+|.++..+. .|
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aH------------------------------------- 122 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AH------------------------------------- 122 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-hh-------------------------------------
Confidence 4679999999999999999999999999999988877775 33
Q ss_pred EEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEec-------CCCccccccccc
Q 001416 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV-------TMRGRDIPKQEL 162 (1081)
Q Consensus 91 ~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~-------t~~~~~~~~~~~ 162 (1081)
...|+++.|+-||. .|++|+.|+.+ +|++. +...+....+..
T Consensus 123 -----------------------------YQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 123 -----------------------------YQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred -----------------------------ccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 23456666666666 44444444444 46442 112334555778
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
|.-+|+.+...+ .+...+++|+|.|.++++||+..+..+.++. ....++++. .+|.+..+..|+.+|.|.+.
T Consensus 173 HtlsITDl~ig~---Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~---lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 173 HTLSITDLQIGS---GGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVA---LDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred CcceeEEEEecC---CCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEE---EcccccEEEecCCcceEEee
Confidence 888999988844 3456789999999999999999999998885 778899998 69999999999999999998
Q ss_pred EcCCCCc--c--------cccccceeecccCC--cEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcc
Q 001416 243 SADHGQD--S--------RELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL 310 (1081)
Q Consensus 243 d~~~~~~--~--------~~~~~~~~l~~h~~--~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~ 310 (1081)
++..... . .+-.....+.||++ .|+|++++- |+.+|++|+.||.|+|||+.+.++++++
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~---DgtlLlSGd~dg~VcvWdi~S~Q~iRtl------ 315 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST---DGTLLLSGDEDGKVCVWDIYSKQCIRTL------ 315 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec---CccEEEeeCCCCCEEEEecchHHHHHHH------
Confidence 8765331 0 01113345678988 999999998 9999999999999999999999998876
Q ss_pred ccCCCCeEEEeecCC
Q 001416 311 ACHSVASWCHPRAPN 325 (1081)
Q Consensus 311 ~~h~~~v~~v~~spd 325 (1081)
....++|+.+.+.|-
T Consensus 316 ~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 316 QTSKGPVTNLQINPL 330 (476)
T ss_pred hhhccccceeEeecc
Confidence 224456777776553
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=9.8e-19 Score=197.67 Aligned_cols=210 Identities=20% Similarity=0.285 Sum_probs=174.4
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEE
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~ 172 (1081)
|..+-+|.+....+ ...+.+| .++|.++.|+++.. ++++|+.++.+ +||+... +.+..+.+|...+..+.|
T Consensus 49 ~~k~~L~~i~kp~~----i~S~~~h-espIeSl~f~~~E~-LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 49 DEKVNLWAIGKPNA----ITSLTGH-ESPIESLTFDTSER-LLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNITSVDF 120 (825)
T ss_pred ceeeccccccCCch----hheeecc-CCcceeeecCcchh-hhcccccCCceeeeehhhh--hhhhhhhccccCcceeee
Confidence 44444555444332 2224555 78899999999875 88888888777 5999975 456678899999999999
Q ss_pred eeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 001416 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1081)
Q Consensus 173 ~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~ 252 (1081)
+|-+.+.+.|+.|+.+++||.+...|.+.+. +|...|.++. ++|+|+++++|+.|.+++|||...|+...+
T Consensus 121 -----~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~---lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 121 -----HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLR---LSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred -----ccceEEeccccccccceehhhhccCceeeec-CCcceeEEEe---ecCCCceeeccCCcceeeeecccccccccc
Confidence 5789999999999999999999888999987 7999999998 799999999999999999999999987665
Q ss_pred cccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEE
Q 001416 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1081)
Q Consensus 253 ~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s 332 (1081)
+++|+..|.++.|+| ..-++++||.|++|++||+++.+.+... ......|.+..|+|++..+.+|
T Consensus 192 ------f~~~e~~v~sle~hp---~e~Lla~Gs~d~tv~f~dletfe~I~s~------~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 192 ------FKSHEGKVQSLEFHP---LEVLLAPGSSDRTVRFWDLETFEVISSG------KPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ------cccccccccccccCc---hhhhhccCCCCceeeeeccceeEEeecc------CCccCCceeeeecCCceeeecC
Confidence 689999999999999 8889999999999999999987776554 3346789999999999988766
Q ss_pred CCc
Q 001416 333 KDS 335 (1081)
Q Consensus 333 ~D~ 335 (1081)
...
T Consensus 257 ~q~ 259 (825)
T KOG0267|consen 257 EQI 259 (825)
T ss_pred chh
Confidence 554
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.2e-16 Score=162.95 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=191.4
Q ss_pred cccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCC--cccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR--GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 115 ~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~--~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
..+| .+.|.++.|.+.|+++..+.++..+.+||.+... ..+......|.+.|..+.|.+ ..-|+.+|++|.|++
T Consensus 9 ~s~h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh---PEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 9 DSGH-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH---PEFGQVVATCSYDRT 84 (361)
T ss_pred ccCC-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC---ccccceEEEEecCCc
Confidence 3445 6789999999999855444445555579965432 334455678999999999964 235889999999999
Q ss_pred EEEEEcC---------CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceee----
Q 001416 193 IRVLSMI---------SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL---- 259 (1081)
Q Consensus 193 I~lwd~~---------~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l---- 259 (1081)
+.||.-. .+....++. ...+.|+.+. |....-|-.+++++.||++|||+.-....+..+.....+
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~-FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVK-FAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred eeeeeecccccccccceeEEEEEee-cCCcceeEEE-ecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 9999862 233444554 6788999998 323345789999999999999987655444333222222
Q ss_pred ---cccCCcEEEEEEeeecCCCCEEEEEECC-----CeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC----
Q 001416 260 ---KAHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD---- 327 (1081)
Q Consensus 260 ---~~h~~~V~~v~fsp~~~~~~~Lvsgs~D-----g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~---- 327 (1081)
..+..+..|+.|+|..-..++|+.|+.+ +.++||...... ++...+.++.+|..+|+.++|.|+--
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 2567788999999855566889998876 588999875433 22233456789999999999999632
Q ss_pred EE-EEECCc-eEEEeccCCcccc------cccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 328 IL-TCVKDS-HIWAIEHPTYSAL------TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 328 ll-s~s~D~-~IWdi~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
+| +++.|| +||.+........ ...+.+++ -..+..+..|.. .||.+.|.-. +.+|++.++||.| ++|.
T Consensus 241 ~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~-v~~vs~~~~H~~-~VWrv~wNmt-GtiLsStGdDG~V-RLWk 316 (361)
T KOG2445|consen 241 LLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLP-VEKVSELDDHNG-EVWRVRWNMT-GTILSSTGDDGCV-RLWK 316 (361)
T ss_pred eEEEeecCcEEEEEEeeccchhhhhcccCCCCccccc-eEEeeeccCCCC-ceEEEEEeee-eeEEeecCCCcee-eehh
Confidence 45 678885 8999984210000 00011111 122344667777 9999999998 7788999999996 9997
Q ss_pred CC
Q 001416 400 PR 401 (1081)
Q Consensus 400 ~~ 401 (1081)
.+
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 43
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-16 Score=164.02 Aligned_cols=259 Identities=16% Similarity=0.221 Sum_probs=180.6
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEecCCccceEEe--c-cCCCeEEEeecCCCCCcee
Q 001416 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR----QVIYELKAGGVDQRRLV--G-AKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 8 ~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~----~~i~~~~~~~~~~v~~v--s-~~~~~lasg~~d~~~~~~~ 80 (1081)
.+|.+-|+++.|.+.|+.+|||+.|++|+|||..+. .+....+.+.....+.+ + .-|+.+|+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS--------- 80 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS--------- 80 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---------
Confidence 489999999999999999999999999999996433 44556665554444444 3 3466666654
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCc--c--ccccccccccCCCCCeeecccCCCCC-eEEEEEecCcEEE-EEecC---
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNR--A--AAAEAPTAVSNVTSGFASPPPSTKGR-HFLVICCVNKAIF-LDLVT--- 151 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~--~--~~~~~~~~~~h~~~~V~sl~fsp~g~-~~l~s~s~d~~i~-wd~~t--- 151 (1081)
+|++++||.-.... + ......+......+.|+.++|.|... ..+++++.|++++ |+.-.
T Consensus 81 ------------~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 81 ------------YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred ------------cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 79999999863221 1 11112222233377899999999532 3577888888875 75422
Q ss_pred CCcccccc--------cccCCCCeeEEEEeeccccCCCCEEEEEECC-----CeEEEEEcCC----CeEEEEEecccccc
Q 001416 152 MRGRDIPK--------QELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-----GVIRVLSMIS----WKLVRRYTGGHKGS 214 (1081)
Q Consensus 152 ~~~~~~~~--------~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D-----g~I~lwd~~~----~~~~~~~~~~h~~~ 214 (1081)
...+.+.. ...+..+..|+.|+|.. -..++|+.|+++ +.++||.... +..+..+. +|+.+
T Consensus 149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr--~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dp 225 (361)
T KOG2445|consen 149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR--MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDP 225 (361)
T ss_pred cccchhhhhhhhccCCcccccCcceEEeecccc--ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCc
Confidence 11121111 12345678999997642 245678888876 5788998743 34556676 99999
Q ss_pred eEEEEEeeeCCC---CCEEEEEeCCCcEEEEEcCCCC------------cccc--cccceeecccCCcEEEEEEeeecCC
Q 001416 215 ISCLMTFMASSG---EALLVSGGSDGLLILWSADHGQ------------DSRE--LVPKLSLKAHDGGVVAVELSRVMGG 277 (1081)
Q Consensus 215 V~~l~w~~~s~d---~~~l~sgs~Dg~V~vWd~~~~~------------~~~~--~~~~~~l~~h~~~V~~v~fsp~~~~ 277 (1081)
|+.++|- +.- -.+|++++.|| |+||.+.... ...+ +.....+.+|++.|..+.|+- .
T Consensus 226 I~di~wA--Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm---t 299 (361)
T KOG2445|consen 226 IRDISWA--PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM---T 299 (361)
T ss_pred ceeeeec--cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee---e
Confidence 9999963 322 35899999999 9999987411 1111 112334678999999999998 8
Q ss_pred CCEEEEEECCCeEEEEECC
Q 001416 278 SPQLITIGADKTLAIWDTV 296 (1081)
Q Consensus 278 ~~~Lvsgs~Dg~V~iWDl~ 296 (1081)
|..|.+.|+||.||+|...
T Consensus 300 GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 300 GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeEEeecCCCceeeehhhh
Confidence 9999999999999999864
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=4.6e-16 Score=174.37 Aligned_cols=264 Identities=17% Similarity=0.145 Sum_probs=179.3
Q ss_pred eeeCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeec
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWL-VTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~L-asgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~ 83 (1081)
+.+.+| ..+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+........+++++.++.+.
T Consensus 25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~------------ 91 (300)
T TIGR03866 25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIAN------------ 91 (300)
T ss_pred EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEc------------
Confidence 445555 447889999999876 677789999999999998888776443332233377877665432
Q ss_pred CCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccccc
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
. .++.+++||+.+.+... .... ...+.+++|+|+++.++++..++..+ .||..+++... . ..
T Consensus 92 -~-------~~~~l~~~d~~~~~~~~----~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~--~-~~ 154 (300)
T TIGR03866 92 -E-------DDNLVTVIDIETRKVLA----EIPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD--N-VL 154 (300)
T ss_pred -C-------CCCeEEEEECCCCeEEe----EeeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE--E-EE
Confidence 1 37899999998765321 1111 22357899999998544444443444 47877653221 1 12
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEE-ECCCeEEEEEcCCCeEEEEEeccc-----ccc--eEEEEEeeeCCCCCEEEE-E
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTGGH-----KGS--ISCLMTFMASSGEALLVS-G 233 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sg-s~Dg~I~lwd~~~~~~~~~~~~~h-----~~~--V~~l~w~~~s~d~~~l~s-g 233 (1081)
....+.+++| +|++.+++++ ..++.|++||+++++.+..+. .+ ... ...+. ++|+++.++. .
T Consensus 155 ~~~~~~~~~~-----s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~---~s~dg~~~~~~~ 225 (300)
T TIGR03866 155 VDQRPRFAEF-----TADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIK---LTKDGKTAFVAL 225 (300)
T ss_pred cCCCccEEEE-----CCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceE---ECCCCCEEEEEc
Confidence 2345678899 7889988555 469999999999988877664 22 112 23454 5899887544 4
Q ss_pred eCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEE-ECCCeEEEEECCCCceeeEecCCCcccc
Q 001416 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 234 s~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsg-s~Dg~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
+.++.+.+||+++++.... + .+...+.+++|+| ++.+|+++ +.++.|++||+++++++.+++ .
T Consensus 226 ~~~~~i~v~d~~~~~~~~~------~-~~~~~~~~~~~~~---~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~------~ 289 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDY------L-LVGQRVWQLAFTP---DEKYLLTTNGVSNDVSVIDVAALKVIKSIK------V 289 (300)
T ss_pred CCCCeEEEEECCCCcEEEE------E-EeCCCcceEEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEEE------c
Confidence 5677899999987664322 1 2345789999999 88888876 469999999999999988872 2
Q ss_pred CCCCeEEEeecC
Q 001416 313 HSVASWCHPRAP 324 (1081)
Q Consensus 313 h~~~v~~v~~sp 324 (1081)
....+.++++|
T Consensus 290 -~~~~~~~~~~~ 300 (300)
T TIGR03866 290 -GRLPWGVVVRP 300 (300)
T ss_pred -ccccceeEeCC
Confidence 24446777765
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3e-16 Score=182.60 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=184.2
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~ 199 (1081)
....+.++|.|+|+.++++++++.+.+|+..... ........++..|.+++. ++.+|++|+.+++|.+|.+.
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee-------cccceEEeeccceEEEeeCC
Confidence 4456899999999944445555555569776542 122223337888999987 56699999999999999998
Q ss_pred CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 200 ~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
+++.-..+. ..+-++.+++ ++-+|.+++.||.|-.|++-++..... ...+++|+.+|.++.|+| .++
T Consensus 85 s~~~~~iL~-Rftlp~r~~~---v~g~g~~iaagsdD~~vK~~~~~D~s~------~~~lrgh~apVl~l~~~p---~~~ 151 (933)
T KOG1274|consen 85 SGEEDTILA-RFTLPIRDLA---VSGSGKMIAAGSDDTAVKLLNLDDSSQ------EKVLRGHDAPVLQLSYDP---KGN 151 (933)
T ss_pred CCCccceee-eeeccceEEE---EecCCcEEEeecCceeEEEEeccccch------heeecccCCceeeeeEcC---CCC
Confidence 765443333 4557888887 688999999999999999999988763 345899999999999999 999
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccC--CCCeEEEeecCCC-CEEEEECCc--eEEEeccCCcccccccccc
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACH--SVASWCHPRAPNL-DILTCVKDS--HIWAIEHPTYSALTRPLCE 354 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h--~~~v~~v~~spd~-~lls~s~D~--~IWdi~~~~~~~~~~~~~~ 354 (1081)
+|++.+-||.|++||++++.+..++..+...... ...+..++|+|++ .+++.+.|+ ++|+...
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~------------ 219 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG------------ 219 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC------------
Confidence 9999999999999999999988887665544333 3456789999994 566666665 5666553
Q ss_pred cCCCCCCeEEcc-CCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 355 LSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 355 ~~~~~~~~~l~~-~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
......+.. +....+.+++|+|. +.+||+++-+|.| .+||..+
T Consensus 220 ---we~~f~Lr~~~~ss~~~~~~wsPn-G~YiAAs~~~g~I-~vWnv~t 263 (933)
T KOG1274|consen 220 ---WELQFKLRDKLSSSKFSDLQWSPN-GKYIAASTLDGQI-LVWNVDT 263 (933)
T ss_pred ---ceeheeecccccccceEEEEEcCC-CcEEeeeccCCcE-EEEeccc
Confidence 222223322 22225999999999 6677999999997 7999883
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=9.4e-17 Score=169.55 Aligned_cols=222 Identities=23% Similarity=0.295 Sum_probs=164.1
Q ss_pred ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEE---EEEecccccceEEEEEeeeCCCCCEEE
Q 001416 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV---RRYTGGHKGSISCLMTFMASSGEALLV 231 (1081)
Q Consensus 155 ~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~---~~~~~~h~~~V~~l~w~~~s~d~~~l~ 231 (1081)
+.+.++..|...=+.++|+|. ..| .+++|..-+.|++|...++.-. .-|. +|+..|..++| .+.....|+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~---~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqW--SptE~~vfa 274 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPI---KTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQW--SPTEDGVFA 274 (440)
T ss_pred CceEEecccCccceeeecccc---ccc-ccccCccccceEeeeeccCceeecCcccc-ccccchhhhcc--CCccCceEE
Confidence 356667788888899999652 233 4889988899999999765332 2344 79999999998 466778999
Q ss_pred EEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccc
Q 001416 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1081)
Q Consensus 232 sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~ 311 (1081)
|||.||+|+|||++.+.... -...++|.+.|+-+.|+. ..++|++|++||+++|||+++.+.- .++..+.
T Consensus 275 ScS~DgsIrIWDiRs~~~~~----~~~~kAh~sDVNVISWnr---~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk 344 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKA----AVSTKAHNSDVNVISWNR---REPLLASGGDDGTLSIWDLRQFKSG---QPVATFK 344 (440)
T ss_pred eeecCceEEEEEecCCCccc----eeEeeccCCceeeEEccC---CcceeeecCCCceEEEEEhhhccCC---CcceeEE
Confidence 99999999999999985332 223489999999999998 7779999999999999999875543 3455668
Q ss_pred cCCCCeEEEeecCCCC--EEEEECCc--eEEEeccCCcccc--cccccccCCCCCCeEEccC-CCccEEEEEEeCCCCeE
Q 001416 312 CHSVASWCHPRAPNLD--ILTCVKDS--HIWAIEHPTYSAL--TRPLCELSSLVPPQVLAHH-KKLRVYCMVAHSLQPHL 384 (1081)
Q Consensus 312 ~h~~~v~~v~~spd~~--lls~s~D~--~IWdi~~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~~~V~~l~~sp~~~~l 384 (1081)
.|..+|+++.|+|... ++++|.|. .|||+....-... ......+. ..|.+.+..| +...+--+.||++-+-+
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~-dlPpQLLFVHqGQke~KevhWH~QiPG~ 423 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ-DLPPQLLFVHQGQKEVKEVHWHRQIPGL 423 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh-cCCceeEEEecchhHhhhheeccCCCCe
Confidence 9999999999999654 55677775 6899975321000 01111111 2333344344 44478889999998888
Q ss_pred EEEEECCCeE
Q 001416 385 VATGTNVGVI 394 (1081)
Q Consensus 385 latgs~dG~I 394 (1081)
+++.+.||.-
T Consensus 424 lvsTa~dGfn 433 (440)
T KOG0302|consen 424 LVSTAIDGFN 433 (440)
T ss_pred EEEeccccee
Confidence 9999999984
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.4e-18 Score=194.58 Aligned_cols=230 Identities=20% Similarity=0.230 Sum_probs=187.0
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEc
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~ 198 (1081)
...+.++..-..++ .+++|+.+..+ .|..... ..+..+.+|..+|.|+.| +++..+|+.|+.+|+|++||+
T Consensus 28 saav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f-----~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTF-----DTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccce-eeccCCCceeeccccccCC--chhheeeccCCcceeeec-----CcchhhhcccccCCceeeeeh
Confidence 34455555534444 78888888887 6765543 455567899999999999 678899999999999999999
Q ss_pred CCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCC
Q 001416 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1081)
Q Consensus 199 ~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~ 278 (1081)
+..+.++++. ||...+.++. |+|-+.++++|+.|+.+++||++...+. +.+.+|...|..+.|+| +|
T Consensus 100 eeAk~vrtLt-gh~~~~~sv~---f~P~~~~~a~gStdtd~~iwD~Rk~Gc~------~~~~s~~~vv~~l~lsP---~G 166 (825)
T KOG0267|consen 100 EEAKIVRTLT-GHLLNITSVD---FHPYGEFFASGSTDTDLKIWDIRKKGCS------HTYKSHTRVVDVLRLSP---DG 166 (825)
T ss_pred hhhhhhhhhh-ccccCcceee---eccceEEeccccccccceehhhhccCce------eeecCCcceeEEEeecC---CC
Confidence 9999999998 9999999998 5899999999999999999999976644 45788999999999999 99
Q ss_pred CEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCccccccccccc
Q 001416 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCEL 355 (1081)
Q Consensus 279 ~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~ 355 (1081)
.+++++++|.+++|||...|+.+..| ..|...+..+.|||..-++ +||.|. ++||+++-
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------------ 228 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEF------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------------ 228 (825)
T ss_pred ceeeccCCcceeeeeccccccccccc------ccccccccccccCchhhhhccCCCCceeeeecccee------------
Confidence 99999999999999999999988776 7899999999999988877 577785 68999841
Q ss_pred CCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCe
Q 001416 356 SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1081)
Q Consensus 356 ~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~ 393 (1081)
..+....+... .|.|.+|.|+ +..+.+|..+..
T Consensus 229 ---e~I~s~~~~~~-~v~~~~fn~~-~~~~~~G~q~sl 261 (825)
T KOG0267|consen 229 ---EVISSGKPETD-GVRSLAFNPD-GKIVLSGEQISL 261 (825)
T ss_pred ---EEeeccCCccC-CceeeeecCC-ceeeecCchhhh
Confidence 11111222233 8999999998 666677766655
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.6e-15 Score=155.05 Aligned_cols=278 Identities=18% Similarity=0.185 Sum_probs=193.2
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecC--------cEEEEEecCCC-------cccc
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--------KAIFLDLVTMR-------GRDI 157 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d--------~~i~wd~~t~~-------~~~~ 157 (1081)
.|+.|.+.++....... ......|..+.|+.++-+|..+++++++..+ +..+|.+.... ..++
T Consensus 38 ~dNqVhll~~d~e~s~l--~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSEL--LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchh--hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 47888888877665321 2223345578899999999988899887762 23368654321 1122
Q ss_pred cccc-cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeE-EEEE----ecccccceEEEEEeeeCCCCCEEE
Q 001416 158 PKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRY----TGGHKGSISCLMTFMASSGEALLV 231 (1081)
Q Consensus 158 ~~~~-~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~-~~~~----~~~h~~~V~~l~w~~~s~d~~~l~ 231 (1081)
..+. .+-+.|.|+.| .|++..+++-. |..|.+|++..+.. +..+ ..+|....++-+|- .+.+++.++
T Consensus 116 ~~Ldteavg~i~cvew-----~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws-pHHdgnqv~ 188 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEW-----EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS-PHHDGNQVA 188 (370)
T ss_pred hcCCHHHhCceeeEEE-----cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccC-CCCccceEE
Confidence 2222 23358999999 56788777664 88899999986644 3333 22467778888873 335788887
Q ss_pred EEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccc
Q 001416 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1081)
Q Consensus 232 sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~ 311 (1081)
+ ..|+++..||+++.++...+ -.+|...|..++|+| ....+|+||++||.|+|||.+..+. ++..+.
T Consensus 189 t-t~d~tl~~~D~RT~~~~~sI-----~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~ 255 (370)
T KOG1007|consen 189 T-TSDSTLQFWDLRTMKKNNSI-----EDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTKF-----PVQELP 255 (370)
T ss_pred E-eCCCcEEEEEccchhhhcch-----hhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCCc-----cccccC
Confidence 6 45999999999987654432 367888999999999 3667899999999999999986542 455679
Q ss_pred cCCCCeEEEeecCCCC--EEEEECCce--EEEeccCCcccc-------c--------ccccccCCCCCCeEEccCCCccE
Q 001416 312 CHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSAL-------T--------RPLCELSSLVPPQVLAHHKKLRV 372 (1081)
Q Consensus 312 ~h~~~v~~v~~spd~~--lls~s~D~~--IWdi~~~~~~~~-------~--------~~~~~~~~~~~~~~l~~~~~~~V 372 (1081)
+|+.+||++.|+|... +|++|.|.+ +|...+...... . .....++ ...+.++..|.+ .|
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~-dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ-DGQLETYDEHED-SV 333 (370)
T ss_pred CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc-cccccccccccc-ce
Confidence 9999999999999665 558999975 455433210000 0 0000011 122446777888 99
Q ss_pred EEEEEeCCCCeEEEEEECCCeE
Q 001416 373 YCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 373 ~~l~~sp~~~~llatgs~dG~I 394 (1081)
++++|+.-.+.++|+-+.||.+
T Consensus 334 Y~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred EEEeeccCCCeeEEEeccCceE
Confidence 9999999889999999999997
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=5.3e-16 Score=173.68 Aligned_cols=285 Identities=17% Similarity=0.185 Sum_probs=195.2
Q ss_pred eEEEEEeCCeEEEEEcCCCccccc--cccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccC
Q 001416 87 VKQVNFYDDDVRFWQLWRNRAAAA--EAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 87 V~~v~f~Dg~IriWdl~~~~~~~~--~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~ 163 (1081)
+..++-.||.|.++|....+.... .+.....| ...|..+.|.| |+..|++.+.|..++ ||+++.+........+|
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccc-cceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 444444789999999876553211 12333445 78899999999 777889888888885 99998876555557899
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeE--E----EEEec--------------------ccccceEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL--V----RRYTG--------------------GHKGSISC 217 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~--~----~~~~~--------------------~h~~~V~~ 217 (1081)
...+.+++|+| -+...+++|+.||.|.|||++-... . ..+.. +|...|.+
T Consensus 144 ~~SvkS~cf~~----~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 144 TGSVKSECFMP----TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccchhhhcc----CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 99999999965 3455799999999999999853210 0 00000 23333333
Q ss_pred -EEEeeeCCCCCEEEEEeC-CCcEEEEEcCCCCccccccccee--eccc---CCcEEEEEEeeecCCCCEEEEEECCCeE
Q 001416 218 -LMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLS--LKAH---DGGVVAVELSRVMGGSPQLITIGADKTL 290 (1081)
Q Consensus 218 -l~w~~~s~d~~~l~sgs~-Dg~V~vWd~~~~~~~~~~~~~~~--l~~h---~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V 290 (1081)
+. ..+..|..+|+++|. |+.|+|||++......+..+... +..| ..++.++.... .|.+|...+.|++|
T Consensus 220 svT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs---sGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 220 SVT-VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS---SGTYLFASCTDNSI 295 (720)
T ss_pred eeE-EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC---CCCeEEEEecCCcE
Confidence 11 113578889999998 99999999998765443333222 2333 34677777766 67888888889999
Q ss_pred EEEECCCCceeeEecCCCccccCCCC--eEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEc
Q 001416 291 AIWDTVSFKELRRIKPVPKLACHSVA--SWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLA 365 (1081)
Q Consensus 291 ~iWDl~t~~~~~~~~~~~~~~~h~~~--v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (1081)
..|++.+... .+.....+|... -..-..+|++.++ +++.|. .+|.+++. ..+...+.
T Consensus 296 y~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~--------------e~~~~~l~ 357 (720)
T KOG0321|consen 296 YFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP--------------EAPPALLL 357 (720)
T ss_pred EEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc--------------cCChhhhh
Confidence 9999976432 122222333321 1244578999865 788886 58888864 34445667
Q ss_pred cCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 366 HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 366 ~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
+|.. .|++++|.|..-.=++++++|-.+ ++|++.
T Consensus 358 Ght~-eVt~V~w~pS~~t~v~TcSdD~~~-kiW~l~ 391 (720)
T KOG0321|consen 358 GHTR-EVTTVRWLPSATTPVATCSDDFRV-KIWRLS 391 (720)
T ss_pred Ccce-EEEEEeeccccCCCceeeccCcce-EEEecc
Confidence 8888 999999999755557888999996 999973
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.9e-15 Score=154.90 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=147.7
Q ss_pred ccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe-----EEE-EEecccccceEEEEEeeeCCCCCEE
Q 001416 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-----LVR-RYTGGHKGSISCLMTFMASSGEALL 230 (1081)
Q Consensus 157 ~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~-----~~~-~~~~~h~~~V~~l~w~~~s~d~~~l 230 (1081)
+..+.+|.+.|+|++| +.||++|++++.|++|++|+++... +++ .++.+|. +.+. |.||-+-+
T Consensus 79 ~~~LKgH~~~vt~~~F-----sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~---FapDc~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF-----SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVV---FAPDCKSV 147 (420)
T ss_pred hhhhhccCCceeeeEE-----cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc---eEEE---ECCCcceE
Confidence 3446789999999999 7899999999999999999997532 222 2222333 4444 57776654
Q ss_pred E-EEeCCCcEEEEEcCCCCcc---cccccce---eecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeE
Q 001416 231 V-SGGSDGLLILWSADHGQDS---RELVPKL---SLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1081)
Q Consensus 231 ~-sgs~Dg~V~vWd~~~~~~~---~~~~~~~---~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~ 303 (1081)
+ +.-...++++|-+...+.- ..+.+.- --+.|.-.+..+-... ++.+|+|++.|..|.+|+++ |+.++.
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC---CceEEEEecCCCcEEEEecC-Cceeee
Confidence 4 4455668999987643321 1100100 0123555555555543 78999999999999999998 888777
Q ss_pred ecCCCccccCCCCeEEEeecCCCCEEEEE---CCceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC
Q 001416 304 IKPVPKLACHSVASWCHPRAPNLDILTCV---KDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1081)
Q Consensus 304 ~~~~~~~~~h~~~v~~v~~spd~~lls~s---~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~ 380 (1081)
+ ......-+..+.||+|++++.+ -|.+||.+--..- ..++.-+.+..+.+|.. .|..++|+|+
T Consensus 224 i------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-------G~fqev~rvf~LkGH~s-aV~~~aFsn~ 289 (420)
T KOG2096|consen 224 I------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-------GTFQEVKRVFSLKGHQS-AVLAAAFSNS 289 (420)
T ss_pred e------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC-------cchhhhhhhheeccchh-heeeeeeCCC
Confidence 6 3333444567899999988543 3678998753211 01112334567889998 9999999998
Q ss_pred CCeEEEEEECCCeEEEEeCCC
Q 001416 381 QPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 381 ~~~llatgs~dG~Il~iwd~~ 401 (1081)
...+++.+.||.. ++||+.
T Consensus 290 -S~r~vtvSkDG~w-riwdtd 308 (420)
T KOG2096|consen 290 -STRAVTVSKDGKW-RIWDTD 308 (420)
T ss_pred -cceeEEEecCCcE-EEeecc
Confidence 6777999999997 999955
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.6e-16 Score=170.56 Aligned_cols=291 Identities=17% Similarity=0.183 Sum_probs=205.0
Q ss_pred cCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeeccc
Q 001416 51 AGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP 128 (1081)
Q Consensus 51 ~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~f 128 (1081)
.+|.+.++++ ++.|..|++|+ .||+||+|.+.+++|.. .-...+.|.+++|
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGs---------------------dDGtvriWEi~TgRcvr------~~~~d~~I~~vaw 449 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGS---------------------DDGTVRIWEIATGRCVR------TVQFDSEIRSVAW 449 (733)
T ss_pred eccCCeEEEEEecCCcceeeecC---------------------CCCcEEEEEeecceEEE------EEeecceeEEEEe
Confidence 3677778877 88999999986 59999999999999733 2223567999999
Q ss_pred CCCCCeEEEEEecCcE-EEEEecCCCc-----------------------------------ccccccccCCCCeeEEEE
Q 001416 129 STKGRHFLVICCVNKA-IFLDLVTMRG-----------------------------------RDIPKQELDNKSLVCMEF 172 (1081)
Q Consensus 129 sp~g~~~l~s~s~d~~-i~wd~~t~~~-----------------------------------~~~~~~~~~~~~I~~ia~ 172 (1081)
+|.+...+++.+.+.. .+.+..-+.. ..+.....|...|+.+.|
T Consensus 450 ~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 450 NPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred cCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 9987765544443333 3343321100 001112346678999999
Q ss_pred eeccccCCCCEEEEEECC---CeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCc
Q 001416 173 LSRSAVGDVPLVAFGSSD---GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1081)
Q Consensus 173 ~p~~~sp~~~~l~sgs~D---g~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~ 249 (1081)
+..|.||++...+ ..|.|.++...+...-|. -..+.|.++. |+|...+|+.++ ...|++||+.....
T Consensus 530 -----HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~---FHPs~p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 530 -----HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVK---FHPSKPYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred -----ecCCceEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEE---ecCCCceEEEEe-ccceEEEehhHHHH
Confidence 6889999998754 568889987665555554 4557788887 688888888766 56899999988654
Q ss_pred ccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE
Q 001416 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1081)
Q Consensus 250 ~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll 329 (1081)
+.. +......|.+++.+| .|..|+.|+.|+.++.+|+.-.. ++.+++..|...+.+++||+.-+++
T Consensus 600 vKk------L~tg~kwiS~msihp---~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 600 VKK------LLTGSKWISSMSIHP---NGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred HHH------HhcCCeeeeeeeecC---CCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcccccee
Confidence 443 344557899999999 89999999999999999997543 2445568999999999999999988
Q ss_pred -EEECCceEEEeccCCcccccccccccCCCCCCeEEccCCC---ccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 330 -TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 330 -s~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
+|+.|+.+.-....-|..+. ..+--+|+..+.+|.. ..|..+.|||..+++ ++++.||+| ++|
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl~----qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL-fsAGAd~ti-rlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDLL----QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL-FSAGADGTI-RLF 732 (733)
T ss_pred eeecCCCcEEEEeeeeehhhh----cCCceEeeeeccCceeecccceEeecccCCCceE-EecCCCceE-Eee
Confidence 56667754322221221111 1112456667777765 247888899997776 778889996 887
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=5.5e-16 Score=168.27 Aligned_cols=269 Identities=13% Similarity=0.169 Sum_probs=186.5
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccc-cCCCCeeEEE
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQE-LDNKSLVCME 171 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~-~~~~~I~~ia 171 (1081)
..++++||+..........+... ...+.+++|+......+++.+.+.+++ |. +.++...++... ...+.-.|++
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred CCceEEeecccccCccccccCCC---CCcceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHh
Confidence 56799999987664222222222 234889999876643444445566665 52 222212232222 2223444444
Q ss_pred EeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 001416 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1081)
Q Consensus 172 ~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~ 251 (1081)
. .....++++|+..++|+|||++...+.+.+ .+|+..|+++. +.-...+|++++..|.|.|..+.++....
T Consensus 87 ~-----~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~---YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 87 C-----ASQSLYEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVD---YNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred h-----hhcceeeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEE---ecCCcceeEEeccCCcEEEEecccCcccc
Confidence 4 223578999999999999999954444444 59999999998 46666799999999999999998876443
Q ss_pred ccccceeecc-cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCE-E
Q 001416 252 ELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI-L 329 (1081)
Q Consensus 252 ~~~~~~~l~~-h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~l-l 329 (1081)
+ +.. ....|.-+.|+| ....+|.+++++|.|.+||+....+...+ ...|..+...++|+|.+.. +
T Consensus 158 ~------f~~~sgqsvRll~ys~--skr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 158 T------FTIDSGQSVRLLRYSP--SKRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred c------eecCCCCeEEEeeccc--ccceeeEeeccCCeEEEEeccCCCcccch-----hhhccCCcCcceecCCccceE
Confidence 3 222 234567899999 36677889999999999999887766544 5789999999999998883 3
Q ss_pred -EEECCce--EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCC
Q 001416 330 -TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1081)
Q Consensus 330 -s~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~ 406 (1081)
+.|.|.+ +||+.+. ....++. ... +.++++|+++ +.+|++|...|.+ ..||+|..+..
T Consensus 225 vsVG~Dkki~~yD~~s~---------------~s~~~l~-y~~-Plstvaf~~~-G~~L~aG~s~G~~-i~YD~R~~k~P 285 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQ---------------ASTDRLT-YSH-PLSTVAFSEC-GTYLCAGNSKGEL-IAYDMRSTKAP 285 (673)
T ss_pred EEecccceEEEeecccc---------------cccceee-ecC-CcceeeecCC-ceEEEeecCCceE-EEEecccCCCC
Confidence 7788976 5777642 1112232 223 7899999998 7778999999996 79999986553
Q ss_pred c
Q 001416 407 A 407 (1081)
Q Consensus 407 ~ 407 (1081)
.
T Consensus 286 v 286 (673)
T KOG4378|consen 286 V 286 (673)
T ss_pred c
Confidence 3
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.3e-15 Score=155.53 Aligned_cols=284 Identities=16% Similarity=0.167 Sum_probs=200.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEE
Q 001416 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1081)
Q Consensus 14 V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~ 91 (1081)
-.|+.|++.|.+||.|+.||.|.|||+.|...-+.+. .|...+.++ +++|+.|.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS-------------------- 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSS-------------------- 84 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeec--------------------
Confidence 7899999999999999999999999999988655555 566777777 99999999976
Q ss_pred EeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEe-cCcEEEEEecCCCccccccccc-C-CCCee
Q 001416 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTMRGRDIPKQEL-D-NKSLV 168 (1081)
Q Consensus 92 f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s-~d~~i~wd~~t~~~~~~~~~~~-~-~~~I~ 168 (1081)
.|..+.+||+..+.+. ..-.+.++|+.+.|+|..++.++++- +..-++.+........++.-.. . .....
T Consensus 85 -~D~si~lwDl~~gs~l------~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 85 -RDWSIKLWDLLKGSPL------KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred -CCceeEEEeccCCCce------eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 5899999999988742 23334778999999997665555544 3333344444332222221111 1 12233
Q ss_pred EEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 001416 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~ 248 (1081)
+..| ++.|+++++|...|.+.++|..+.+++..+.......|..+. ++..|+.|+.-+.|+.||.|+++.-.
T Consensus 158 ~~~f-----dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~---~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 158 HGVF-----DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII---VSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccc-----cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE---EeccCcEEEEecCCceEEEEehhhhc
Confidence 4456 688999999999999999999999999888633336677775 79999999999999999999986311
Q ss_pred c---ccccccceeeccc--CCcEEEEEEeeecCCCCEEEEEEC-CCeEEEEECCCCceeeEecCCCccccCC-CCeEEEe
Q 001416 249 D---SRELVPKLSLKAH--DGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSFKELRRIKPVPKLACHS-VASWCHP 321 (1081)
Q Consensus 249 ~---~~~~~~~~~l~~h--~~~V~~v~fsp~~~~~~~Lvsgs~-Dg~V~iWDl~t~~~~~~~~~~~~~~~h~-~~v~~v~ 321 (1081)
. -.+..+...++.- .-.=.+++|+. +|.|++.++. ...+.||.-..|..++.+ .|.. .....+.
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~---dgeYv~a~s~~aHaLYIWE~~~GsLVKIL------hG~kgE~l~DV~ 300 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSG---DGEYVCAGSARAHALYIWEKSIGSLVKIL------HGTKGEELLDVN 300 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecC---CccEEEeccccceeEEEEecCCcceeeee------cCCchhheeecc
Confidence 1 1111122222211 11224678887 8999887774 567999999999988776 3433 3456889
Q ss_pred ecCCCCEEEEECC--ceEEEecc
Q 001416 322 RAPNLDILTCVKD--SHIWAIEH 342 (1081)
Q Consensus 322 ~spd~~lls~s~D--~~IWdi~~ 342 (1081)
|+|-..+++.-.. .+||....
T Consensus 301 whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 301 WHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred cccceeeeeeccCCceEEEEeec
Confidence 9998887743232 37887764
No 155
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=3.2e-15 Score=153.06 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=157.1
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcc----------c---ccccccCCCCeeEEEEeeccccCCCCEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR----------D---IPKQELDNKSLVCMEFLSRSAVGDVPLVA 185 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~----------~---~~~~~~~~~~I~~ia~~p~~~sp~~~~l~ 185 (1081)
.+.|+++...+...+++++|+.|+.+ +||++..... + ......|.-.|..+.|.| .|...+.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP----~DtGmFt 118 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP----IDTGMFT 118 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee----ecCceee
Confidence 56778888777544566666666555 7998754311 1 112345667899999987 4677899
Q ss_pred EEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCc
Q 001416 186 FGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1081)
Q Consensus 186 sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~ 265 (1081)
++|-|.++++||..+.+....|. -.+.|++-+|-......-++++|..|-.|++-|+.+|... .+|.||.++
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------H~LsGHr~~ 190 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------HTLSGHRDG 190 (397)
T ss_pred cccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------eeeccccCc
Confidence 99999999999999998888875 5566766664222233457888889999999999999844 458999999
Q ss_pred EEEEEEeeecCCCCEEEEEECCCeEEEEECCCC-ceeeEec--------CCCccccCCCCeEEEeecCCCCEE-EEECCc
Q 001416 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIK--------PVPKLACHSVASWCHPRAPNLDIL-TCVKDS 335 (1081)
Q Consensus 266 V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~-~~~~~~~--------~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~ 335 (1081)
|.++.|+| ...-.|++|+.||.|++||++.. .+...+. ..+.-..|.+.+..++|+.++.++ +++.|.
T Consensus 191 vlaV~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 191 VLAVEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred eEEEEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 99999999 35667889999999999999765 3443331 122346788899999999999966 788776
Q ss_pred --eEEEeccC
Q 001416 336 --HIWAIEHP 343 (1081)
Q Consensus 336 --~IWdi~~~ 343 (1081)
++|+..++
T Consensus 269 r~r~wn~~~G 278 (397)
T KOG4283|consen 269 RIRVWNMESG 278 (397)
T ss_pred ceEEeecccC
Confidence 68998764
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=6e-16 Score=158.07 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=158.1
Q ss_pred CCeeecccCCCCCeEEEEEecCcEEEEEecCCCcc--ccc--ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEE
Q 001416 121 SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DIP--KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1081)
Q Consensus 121 ~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~--~~~--~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lw 196 (1081)
+.|.++.|.|++. -+++-.++.+.+|++...... .+. ....+....++-+|+| ++++..+++. .|+++..|
T Consensus 124 g~i~cvew~Pns~-klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp---HHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 124 GKINCVEWEPNSD-KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP---HHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred CceeeEEEcCCCC-eeEEeccCceEEEEcccCcchheeecccccccccceecccccCC---CCccceEEEe-CCCcEEEE
Confidence 4789999999987 556666888889998765431 111 1123456788889987 6788888776 67899999
Q ss_pred EcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecC
Q 001416 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1081)
Q Consensus 197 d~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~ 276 (1081)
|.++.++...+..+|...|..+. | ++....+|+||+.||.|++||.+..+ .|..++.+|..+|.+|.|+|.
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlD-f-Npnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~-- 269 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLD-F-NPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPE-- 269 (370)
T ss_pred Eccchhhhcchhhhhcceeeecc-C-CCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCc--
Confidence 99999998888889999999999 2 56667789999999999999998765 266778999999999999994
Q ss_pred CCCEEEEEECCCeEEEEECCCCcee------------------eEecC-----CCccccCCCCeEEEeecCCCCEE--EE
Q 001416 277 GSPQLITIGADKTLAIWDTVSFKEL------------------RRIKP-----VPKLACHSVASWCHPRAPNLDIL--TC 331 (1081)
Q Consensus 277 ~~~~Lvsgs~Dg~V~iWDl~t~~~~------------------~~~~~-----~~~~~~h~~~v~~v~~spd~~ll--s~ 331 (1081)
...+++|||.|..|.+|...+-..- .+.++ +.+...|...|++++|+.-.+.+ +-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 6678999999999999976432210 11111 23567899999999999988855 45
Q ss_pred ECCceEE
Q 001416 332 VKDSHIW 338 (1081)
Q Consensus 332 s~D~~IW 338 (1081)
|.|||+-
T Consensus 350 SYDGRvi 356 (370)
T KOG1007|consen 350 SYDGRVI 356 (370)
T ss_pred ccCceEE
Confidence 7899864
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=1.3e-15 Score=158.58 Aligned_cols=303 Identities=11% Similarity=0.123 Sum_probs=203.0
Q ss_pred eeeCCCCCceEEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEecc-CCCeEEEeecCCCCCce
Q 001416 5 KAFRPTNDKIVKIQLHP----THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGA-KLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp----~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~-~~~~lasg~~d~~~~~~ 79 (1081)
+...+|+.+|..++|++ +.+.+++......+.+++......++-++..- ++ ..+.+.+++.....
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~-------D~d~~Esfytcsw~yd~--- 101 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYA-------DEDHDESFYTCSWSYDS--- 101 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeecc-------CCCCCcceEEEEEEecC---
Confidence 34568999999999995 34455555455688899886544333333110 11 01111111110000
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccc
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~ 158 (1081)
-.+.+...++=.-|.||+.|+.++++ .....+| ...|+.+.|+|+..+++++++.|..++ ||++++....+.
T Consensus 102 --~~~~p~la~~G~~GvIrVid~~~~~~----~~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 102 --NTGNPFLAAGGYLGVIRVIDVVSGQC----SKNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred --CCCCeeEEeecceeEEEEEecchhhh----ccceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 00122222222579999999999885 4566777 889999999999999999999999996 999997533322
Q ss_pred c-cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe------EE---------------------EEEecc
Q 001416 159 K-QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK------LV---------------------RRYTGG 210 (1081)
Q Consensus 159 ~-~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~------~~---------------------~~~~~~ 210 (1081)
- .++|.+.|.++.| ++++.+|++++.|.++++|++...+ +. .+...-
T Consensus 175 GG~egHrdeVLSvD~-----~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDF-----SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred cccccccCcEEEEEE-----cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 2 3689999999999 7899999999999999999997321 10 001235
Q ss_pred cccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcC-CCCccccccc-------ceeecccCCcEEEE--EEeeecCCCCE
Q 001416 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD-HGQDSRELVP-------KLSLKAHDGGVVAV--ELSRVMGGSPQ 280 (1081)
Q Consensus 211 h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~-~~~~~~~~~~-------~~~l~~h~~~V~~v--~fsp~~~~~~~ 280 (1081)
|..+|-|+.|| |++++|-|.++.|..|... -++.+.+..+ ...+.-....++-+ +|.| -+++
T Consensus 250 HrnyVDCvrw~-----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---~~~~ 321 (385)
T KOG1034|consen 250 HRNYVDCVRWF-----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---WQKM 321 (385)
T ss_pred ccchHHHHHHH-----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH---HHHH
Confidence 89999999987 6899999999999999873 2222111101 01111122334444 4556 7789
Q ss_pred EEEEECCCeEEEEECCCCceeeEecCCCccc--cCCCCeEEEeecCCCCEE-EEECCceEEEec
Q 001416 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLA--CHSVASWCHPRAPNLDIL-TCVKDSHIWAIE 341 (1081)
Q Consensus 281 Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~--~h~~~v~~v~~spd~~ll-s~s~D~~IWdi~ 341 (1081)
||.|.+.|.|.+||++...+... .++. .-...|...+|+.|+.+| ....|+.||.++
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~----ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKC----TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccC----ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 99999999999999988776321 1122 123468899999999966 677889998776
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.3e-15 Score=176.41 Aligned_cols=309 Identities=15% Similarity=0.226 Sum_probs=204.9
Q ss_pred eCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccc-----eEEe-ccCCCeEEEeecCCCCCcee
Q 001416 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQ-----RRLV-GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 7 l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~-----v~~v-s~~~~~lasg~~d~~~~~~~ 80 (1081)
..+....-+.+.|||-.+.+++++..-.|+|||++.++.+..|..+.... ...+ ..+...+.+++
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas--------- 1130 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS--------- 1130 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec---------
Confidence 34555567889999999999999988899999999999988887553222 1112 22333333332
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCccccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~ 160 (1081)
.||.||||+-..... ++.-++++... -++ ..
T Consensus 1131 ------------~dGvIRIwk~y~~~~------------------------~~~eLVTaw~~-------Ls~---~~--- 1161 (1387)
T KOG1517|consen 1131 ------------SDGVIRIWKDYADKW------------------------KKPELVTAWSS-------LSD---QL--- 1161 (1387)
T ss_pred ------------cCceEEEeccccccc------------------------CCceeEEeecc-------ccc---cC---
Confidence 477777776432210 11112222211 010 00
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
....+.=.-++| .....+|+++++-..|+|||...-++++.+..+....|+++.- ....|+.+++|..||.|+
T Consensus 1162 ~~~r~~~~v~dW-----qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1162 PGARGTGLVVDW-----QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred ccCCCCCeeeeh-----hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc--cccCCceEEEeecCCceE
Confidence 011111134567 3445566666678999999999888888887778888898872 566689999999999999
Q ss_pred EEEcCCCCcccccccceeecccCCc--EEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCC--C-
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS--V- 315 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~--V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~--~- 315 (1081)
+||.+..... ......+.|+.. |..+.+.+. .-..|++|+.||.|++||++... ..++ .++..|. +
T Consensus 1235 vyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~--G~~elvSgs~~G~I~~~DlR~~~-~e~~---~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1235 VYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQ--GLGELVSGSQDGDIQLLDLRMSS-KETF---LTIVAHWEYGS 1305 (1387)
T ss_pred EeecccCCcc---ccceeecccCCcccceeEEeecC--CCcceeeeccCCeEEEEecccCc-cccc---ceeeeccccCc
Confidence 9999875432 134456788877 999999882 22369999999999999999752 2222 1223333 2
Q ss_pred CeEEEeecCCCCEEEEECC--ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCe
Q 001416 316 ASWCHPRAPNLDILTCVKD--SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1081)
Q Consensus 316 ~v~~v~~spd~~lls~s~D--~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~ 393 (1081)
..+++..|+..+++++|.- .+||++.-..... +.. -..|.+.....+.|++|||. .-++|+|+.|.+
T Consensus 1306 ~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~----~k~------n~~F~~q~~gs~scL~FHP~-~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNI----IKY------NPGFMGQRIGSVSCLAFHPH-RLLLAAGSADST 1374 (1387)
T ss_pred cceeeeeccCCCeeeecCcceEEEEecChhhhcc----ccc------CcccccCcCCCcceeeecch-hHhhhhccCCce
Confidence 4889999999999976553 4799987422111 111 12344555568899999998 777899999999
Q ss_pred EEEEeCCC
Q 001416 394 IISEFDPR 401 (1081)
Q Consensus 394 Il~iwd~~ 401 (1081)
| .+|...
T Consensus 1375 V-~iYs~~ 1381 (1387)
T KOG1517|consen 1375 V-SIYSCE 1381 (1387)
T ss_pred E-EEeecC
Confidence 7 787643
No 159
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=99.69 E-value=4.8e-19 Score=198.70 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=155.7
Q ss_pred CCCCCCC-CccEEEEeeccccccCC-CCCCcceeeecccCceEEEe----e-eeEEEEEecCcccccccccccccc-cce
Q 001416 659 KSPAEAA-PQNFQLYSWETFQPVGG-LLPQPEWTAWDQTVEYCAFA----Y-QHYIVISSLCPQYRYLGDVAIPYA-TGA 730 (1081)
Q Consensus 659 ~~~~~~~-~~~i~~~~~~~~~l~~~-~~~~~k~v~w~~~~~~~~~~----~-~~~~~v~~y~~~~gsl~d~~~~~~-~~~ 730 (1081)
.|.|+|+ -+++|...=. .+.-. .+.|.+-|.=++|.++|++. - ..++|||||-++ |||.|-|..+. ..+
T Consensus 224 ~g~~~~~~~vavk~ik~~--~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~-GsLl~yLr~~~~~~l 300 (468)
T KOG0197|consen 224 LGKWNGSTKVAVKTIKEG--SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPK-GSLLDYLRTREGGLL 300 (468)
T ss_pred EEEEcCCCcccceEEecc--ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEeccc-CcHHHHhhhcCCCcc
Confidence 3445555 4566654332 11111 22578889999999999998 2 348999999999 99999888632 223
Q ss_pred eeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 731 VWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 731 ~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
+-..-..| +++|..||+||+.-.+ |--|--.||+|+..=++||+||||..+-. +.....+..-+-|.-
T Consensus 301 ~~~~Ll~~--------a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~-d~~Y~~~~~~kfPIk-- 369 (468)
T KOG0197|consen 301 NLPQLLDF--------AAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG-DDEYTASEGGKFPIK-- 369 (468)
T ss_pred chHHHHHH--------HHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccC-CCceeecCCCCCCce--
Confidence 33333445 7899999999999777 99999999999999999999999997421 111112222233444
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCccee-eecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAV-AVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
|||||...+.. =+.+.|||||||.+.|+++.|..- . ..+ ....+..+..+
T Consensus 370 ------WtAPEa~~~~~-----------FS~kSDVWSFGVlL~E~fT~G~~py~--~ms-------n~ev~~~le~G--- 420 (468)
T KOG0197|consen 370 ------WTAPEALNYGK-----------FSSKSDVWSFGVLLWELFTYGRVPYP--GMS-------NEEVLELLERG--- 420 (468)
T ss_pred ------ecCHHHHhhCC-----------cccccceeehhhhHHHHhccCCCCCC--CCC-------HHHHHHHHhcc---
Confidence 99999987643 234579999999999998754322 1 011 00001111222
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+.|..|. -|+...-++|..||.++|..||.|..+..+|+..
T Consensus 421 ----------yRlp~P~---~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~ 461 (468)
T KOG0197|consen 421 ----------YRLPRPE---GCPDEVYELMKSCWHEDPEDRPTFETLREVLEDF 461 (468)
T ss_pred ----------CcCCCCC---CCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHh
Confidence 2333332 3778888899999999999999999999988765
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=4.6e-15 Score=160.29 Aligned_cols=228 Identities=16% Similarity=0.198 Sum_probs=167.2
Q ss_pred eCCeEEEEEcCCCcccccc-----------------ccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCc
Q 001416 93 YDDDVRFWQLWRNRAAAAE-----------------APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRG 154 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~-----------------~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~ 154 (1081)
.|-.|.|||+.-....... -....+| .+.|.+++|+-.-+++|++|+.|+.++ ||+.+++
T Consensus 200 mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~- 277 (463)
T KOG0270|consen 200 MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK- 277 (463)
T ss_pred cCceeEEeccccccccccceeechhhhhhhhhhcccccccccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-
Confidence 6889999998543211100 0011234 778889999998889999999998885 9999986
Q ss_pred ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe-EEEEEecccccceEEEEEeeeCCCCCEEEEE
Q 001416 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1081)
Q Consensus 155 ~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~-~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sg 233 (1081)
+...+..|++.|.+++|+| .....|++||.|++|.+.|.+... .-..+ ...+.|-.+.|- +.....++++
T Consensus 278 -p~~s~~~~~k~Vq~l~wh~----~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~--~~se~~f~~~ 348 (463)
T KOG0270|consen 278 -PKSSITHHGKKVQTLEWHP----YEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWD--PHSENSFFVS 348 (463)
T ss_pred -cceehhhcCCceeEEEecC----CCceEEEeccccceEEeeeccCccccCceE--EeccceEEEEec--CCCceeEEEe
Confidence 4445668999999999985 467789999999999999998422 22222 356788899984 5556688889
Q ss_pred eCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccC
Q 001416 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1081)
Q Consensus 234 s~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h 313 (1081)
..||+|+-+|+++.. .+..++++|.++|.++++++ ....+++|++.|+.|++|++..-.+-..... ...
T Consensus 349 tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~--~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~----~~~ 417 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNI--QTPGLLSTASTDKVVKLWKFDVDSPKSVKEH----SFK 417 (463)
T ss_pred cCCceEEeeecCCCC-----CceeEEEeccCCcceEEecC--CCCcceeeccccceEEEEeecCCCCcccccc----ccc
Confidence 999999999999864 25667899999999999998 4678899999999999999875443221111 111
Q ss_pred CCCeEEEeecCCCC-EE-EEECCc--eEEEecc
Q 001416 314 SVASWCHPRAPNLD-IL-TCVKDS--HIWAIEH 342 (1081)
Q Consensus 314 ~~~v~~v~~spd~~-ll-s~s~D~--~IWdi~~ 342 (1081)
-+...|.++.|+-. ++ .||..+ +|||+..
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 12355778888776 33 445444 7999875
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.1e-15 Score=155.86 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=177.3
Q ss_pred eeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe
Q 001416 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~ 202 (1081)
-.++.|++.|..+.+++.++.+++||..|.+. -..+.+|-.+|+|++| |++|+.|+|+|.|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~W-----S~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCW-----SRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEe-----cCCCCEeeeecCCceeEEEeccCCC
Confidence 57889999998555555566666799998753 3447899999999999 8999999999999999999999998
Q ss_pred EEEEEecccccceEEEEEe--------------------------------------------eeCCCCCEEEEEeCCCc
Q 001416 203 LVRRYTGGHKGSISCLMTF--------------------------------------------MASSGEALLVSGGSDGL 238 (1081)
Q Consensus 203 ~~~~~~~~h~~~V~~l~w~--------------------------------------------~~s~d~~~l~sgs~Dg~ 238 (1081)
+++.+. ..++|+...|+ ++.+.|+++++|...|.
T Consensus 99 ~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 99 PLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred ceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 887774 44455444443 36778899999999999
Q ss_pred EEEEEcCCCCcccccccceeeccc-CCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCcee---eEecCCCccccC-
Q 001416 239 LILWSADHGQDSRELVPKLSLKAH-DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL---RRIKPVPKLACH- 313 (1081)
Q Consensus 239 V~vWd~~~~~~~~~~~~~~~l~~h-~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~---~~~~~~~~~~~h- 313 (1081)
+.++|..+-+++..+ +-. ...|..+.++. .+..|+.-+.|+.||.|+++.-... ....+.+++..-
T Consensus 177 llv~~a~t~e~vas~------rits~~~IK~I~~s~---~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 177 LLVYDAETLECVASF------RITSVQAIKQIIVSR---KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV 247 (405)
T ss_pred EEEEecchheeeeee------eechheeeeEEEEec---cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence 999999988776543 222 25688899988 9999999999999999998631110 011111111111
Q ss_pred -CCCeEEEeecCCCCEEEEECC-c---eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEE
Q 001416 314 -SVASWCHPRAPNLDILTCVKD-S---HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1081)
Q Consensus 314 -~~~v~~v~~spd~~lls~s~D-~---~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatg 388 (1081)
...=.+++|+.+|.++.++.. . .||.-.. +..++.+.+.+++..-.+.|||-.+.+ ++-
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~---------------GsLVKILhG~kgE~l~DV~whp~rp~i-~si 311 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI---------------GSLVKILHGTKGEELLDVNWHPVRPII-ASI 311 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCC---------------cceeeeecCCchhheeecccccceeee-eec
Confidence 011127889999998854443 2 4777665 455567777776688889999984443 444
Q ss_pred ECCCeEEEEeCCCCCCC
Q 001416 389 TNVGVIISEFDPRSLPA 405 (1081)
Q Consensus 389 s~dG~Il~iwd~~~~~~ 405 (1081)
..|.+ ++|.....+.
T Consensus 312 -~sg~v-~iw~~~~~en 326 (405)
T KOG1273|consen 312 -ASGVV-YIWAVVQVEN 326 (405)
T ss_pred -cCCce-EEEEeecccc
Confidence 77886 9998654433
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.4e-15 Score=164.26 Aligned_cols=236 Identities=17% Similarity=0.204 Sum_probs=176.6
Q ss_pred EEEEEecCcEE-EEEecCCCcc-------------------cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEE
Q 001416 135 FLVICCVNKAI-FLDLVTMRGR-------------------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIR 194 (1081)
Q Consensus 135 ~l~s~s~d~~i-~wd~~t~~~~-------------------~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~ 194 (1081)
+++.|..+..+ +||+.-.... .-....+|.+.|..++|+- -....|++||.|.+|+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~----~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR----NFRNVLASGSADKTVK 269 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc----ccceeEEecCCCceEE
Confidence 88888888877 6987522100 0001235777888888842 2356799999999999
Q ss_pred EEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeee
Q 001416 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1081)
Q Consensus 195 lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 274 (1081)
+||+.++++..++. .|...|.++.|+ +..+..|++||.|++|.+.|.+....... .++ -.+.|-.++|.|
T Consensus 270 lWD~~~g~p~~s~~-~~~k~Vq~l~wh--~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-----~wk-~~g~VEkv~w~~- 339 (463)
T KOG0270|consen 270 LWDVDTGKPKSSIT-HHGKKVQTLEWH--PYEPSVLLSGSYDGTVALKDCRDPSNSGK-----EWK-FDGEVEKVAWDP- 339 (463)
T ss_pred EEEcCCCCcceehh-hcCCceeEEEec--CCCceEEEeccccceEEeeeccCccccCc-----eEE-eccceEEEEecC-
Confidence 99999999999997 899999999985 77888999999999999999985332211 111 346799999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC-ceeeEecCCCccccCCCCeEEEeecCCCC-EE-EEECCc--eEEEeccCCccccc
Q 001416 275 MGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDS--HIWAIEHPTYSALT 349 (1081)
Q Consensus 275 ~~~~~~Lvsgs~Dg~V~iWDl~t~-~~~~~~~~~~~~~~h~~~v~~v~~spd~~-ll-s~s~D~--~IWdi~~~~~~~~~ 349 (1081)
.....++++.+||+|+-+|++.. +++.++ ..|...|.++++++..+ ++ ++|.|. ++|++.....+...
T Consensus 340 -~se~~f~~~tddG~v~~~D~R~~~~~vwt~------~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 340 -HSENSFFVSTDDGTVYYFDIRNPGKPVWTL------KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred -CCceeEEEecCCceEEeeecCCCCCceeEE------EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 36678888999999999999875 666654 89999999999999776 34 677786 68998753211110
Q ss_pred ccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCC
Q 001416 350 RPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1081)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~ 406 (1081)
... -...+..|.++.|+-...+|.|+..+. +++||+....++
T Consensus 413 -----------~~~---~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V 454 (463)
T KOG0270|consen 413 -----------EHS---FKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV 454 (463)
T ss_pred -----------ccc---ccccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence 001 122367888999998899999999996 599998765443
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.67 E-value=3.1e-15 Score=167.57 Aligned_cols=252 Identities=19% Similarity=0.229 Sum_probs=168.8
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-EecCCccceEEeccCCCeEEEeecCCCCCceeee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYE-LKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~-~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l 82 (1081)
++.+..|.+.|..+.|-|....|++++.|.++++||+.+.+++.. +-.+|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH----------------------------- 143 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH----------------------------- 143 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc-----------------------------
Confidence 567889999999999999667999999999999999998776554 11123
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCC--------
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-------- 153 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~-------- 153 (1081)
...|.+++|.|..+.+|++|+.|+.+ +||.+-..
T Consensus 144 -------------------------------------~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 144 -------------------------------------TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred -------------------------------------ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 23344555555555555555544444 35543110
Q ss_pred -----------------cccccccccCCC----CeeEEEEeeccccCCCCEEEEEEC-CCeEEEEEcCCCeEEEEEe---
Q 001416 154 -----------------GRDIPKQELDNK----SLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYT--- 208 (1081)
Q Consensus 154 -----------------~~~~~~~~~~~~----~I~~ia~~p~~~sp~~~~l~sgs~-Dg~I~lwd~~~~~~~~~~~--- 208 (1081)
.+.+.....+.. .|+.+.| .|...|++++. |+.|++||++.........
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeecccccccccCCCc
Confidence 011122233333 3555666 68889999987 9999999998654332221
Q ss_pred ----ccc---ccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcE--EEEEEeeecCCCC
Q 001416 209 ----GGH---KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV--VAVELSRVMGGSP 279 (1081)
Q Consensus 209 ----~~h---~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V--~~v~fsp~~~~~~ 279 (1081)
.-| ...+.++. ....|.+|.+.+.|++|.+|++.+-.. .+...+.+|-..- ..-..+| ++.
T Consensus 261 ~~~~~t~skrs~G~~nL~---lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSp---d~~ 330 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLI---LDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSP---DDC 330 (720)
T ss_pred ccCccCcccceeeeEEEE---ecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCC---CCc
Confidence 023 23455554 566677777777799999999987542 1333344443211 1123456 899
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCC--CCEEEEECCc--eEEEecc
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN--LDILTCVKDS--HIWAIEH 342 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd--~~lls~s~D~--~IWdi~~ 342 (1081)
++++|+.|....+|.+.+.+. +...+.+|...|++++|.|. .++++|+.|. +||++..
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~-----~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEA-----PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eEeccCCCcceeeeeecCccC-----ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 999999999999999987653 22346899999999999884 5699999886 6899964
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.1e-16 Score=187.05 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=187.6
Q ss_pred CCCeeecccCCCCCe---EEEEEecCcEE-EEEecCC----CcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCC
Q 001416 120 TSGFASPPPSTKGRH---FLVICCVNKAI-FLDLVTM----RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~---~l~s~s~d~~i-~wd~~t~----~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg 191 (1081)
...++.++|.+.|.. +|++|.+|+.+ +||.... +...+.....|.+.|+.++|+| -.++++|+|++||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~----~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP----FQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc----cCCceeeccCCCC
Confidence 557888999887776 68888888777 5987642 2234455678999999999953 2344999999999
Q ss_pred eEEEEEcCCCeEEEEE-ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccC--CcEEE
Q 001416 192 VIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD--GGVVA 268 (1081)
Q Consensus 192 ~I~lwd~~~~~~~~~~-~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~--~~V~~ 268 (1081)
.|.|||+.+-+.-... ...-...|.+++| +......|++++.+|++.|||++..+.+- .+..|. ..+..
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii------~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPII------KLSDTPGRMHCSV 211 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCccc------ccccCCCccceee
Confidence 9999999864433333 1135678999999 67888899999999999999999886443 234343 35789
Q ss_pred EEEeeecCCCCEEEEEECCC---eEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC--EEEEECCce--EEEec
Q 001416 269 VELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIE 341 (1081)
Q Consensus 269 v~fsp~~~~~~~Lvsgs~Dg---~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~--lls~s~D~~--IWdi~ 341 (1081)
++||| ++...|+++++|. .|.+||++.... +...+++|...|.++.|++... +|+++.|++ +|+.+
T Consensus 212 l~WhP--~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 212 LAWHP--DHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeeCC--CCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 99999 4667777777654 699999876442 3344689999999999999774 458999987 58877
Q ss_pred cCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 342 HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
+ ++.+..+...++ ++..+.|+|..+.++++.+-||.| -|+.+...
T Consensus 285 t---------------gEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI-~I~sl~~~ 329 (1049)
T KOG0307|consen 285 T---------------GEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKI-SIYSLQGT 329 (1049)
T ss_pred C---------------ceEeeecCCCCc-ceeeeeecCCCcchhhhheeccce-eeeeeecC
Confidence 5 233344545445 999999999989999999999997 89886653
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.7e-15 Score=157.29 Aligned_cols=326 Identities=12% Similarity=0.061 Sum_probs=213.7
Q ss_pred cceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeee
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l 82 (1081)
..+.+.+|.+.|+++.|+.+++||++|+.|..+++|+++..-.-++.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~--------------------------------- 94 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP--------------------------------- 94 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC---------------------------------
Confidence 35567899999999999999999999999999999998641110100
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccc
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~ 161 (1081)
..+.....|+.+.|.+++|..... ++.+|..++.+ .-|+.+.+...+....
T Consensus 95 ---------------------------KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V~~~~ 146 (609)
T KOG4227|consen 95 ---------------------------KPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYVANEN 146 (609)
T ss_pred ---------------------------CCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecccceeeeeeccc
Confidence 012233444467899999988665 66666666555 5899987655554444
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe-EEEEEec-ccccceEEEEEeeeCCCCCEEEEEeCCCcE
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~-~~~~~~~-~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V 239 (1081)
...+.|+.+.. +|..+.+++.+.++.|.+||.+..+ ....+.. ........+. +.+....+|++.+..+-+
T Consensus 147 ~~~~~VY~m~~-----~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~--F~P~~P~Li~~~~~~~G~ 219 (609)
T KOG4227|consen 147 NNRGDVYHMDQ-----HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE--FHPETPALILVNSETGGP 219 (609)
T ss_pred Ccccceeeccc-----CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee--ecCCCceeEEeccccCCC
Confidence 55568999999 5678899999999999999997644 2222211 2333444554 256667789999999999
Q ss_pred EEEEcCCCCc-ccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCcee-eEecCCCccccCCCCe
Q 001416 240 ILWSADHGQD-SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL-RRIKPVPKLACHSVAS 317 (1081)
Q Consensus 240 ~vWd~~~~~~-~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~-~~~~~~~~~~~h~~~v 317 (1081)
-+||.+.... +........|......-.++.|+| +|..|.+--.-..-.+||+-+..+. .++..-+.--.....+
T Consensus 220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~---~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~ 296 (609)
T KOG4227|consen 220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP---SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTI 296 (609)
T ss_pred CceeeccccchHHhhhccccCcccchhhhheeeCC---CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeee
Confidence 9999987542 111111111221112225678999 8888888777777778898775542 2211000001112245
Q ss_pred EEEeecCCCCEEEEECC--ceEEEeccCCcc-c---ccccccc----cCCCCCCeEEccCCCccEEEEEEeCCCCeEEEE
Q 001416 318 WCHPRAPNLDILTCVKD--SHIWAIEHPTYS-A---LTRPLCE----LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1081)
Q Consensus 318 ~~v~~spd~~lls~s~D--~~IWdi~~~~~~-~---~~~~~~~----~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llat 387 (1081)
.+++|..|-.+++||.+ ..+|.+....-. . ....-.+ +--.....++.+|.. -++.+.|+|. .++|++
T Consensus 297 KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H-~~~l~S 374 (609)
T KOG4227|consen 297 KSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQH-NNLLVS 374 (609)
T ss_pred eeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCC-cceEec
Confidence 67888888887888877 378988643211 1 1100000 011234567889988 8999999998 888899
Q ss_pred EECCCeEEEEeCCCC
Q 001416 388 GTNVGVIISEFDPRS 402 (1081)
Q Consensus 388 gs~dG~Il~iwd~~~ 402 (1081)
.+-+..+ ++|..-.
T Consensus 375 SGVE~~~-KlWS~~r 388 (609)
T KOG4227|consen 375 SGVENSF-KLWSDHR 388 (609)
T ss_pred cchhhhe-ecccccc
Confidence 9999986 9997543
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=2.8e-14 Score=158.79 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=110.0
Q ss_pred EEEEEEeeecCCCCEEEEEECCCeEEEEECCCCce-eeEecCCCccccCCCCeEEEeecCCCC--EEEEECCc--eEEEe
Q 001416 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDS--HIWAI 340 (1081)
Q Consensus 266 V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~-~~~~~~~~~~~~h~~~v~~v~~spd~~--lls~s~D~--~IWdi 340 (1081)
|+.+.|.| -|...|+.+++||.|++|.+..+.. .....+...+..|...|+++.|||=-. +++++.|. ++||+
T Consensus 630 vtDl~WdP--FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 630 VTDLHWDP--FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeecccCC--CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 56667777 3778999999999999999976432 223345556789999999999999433 44677774 79999
Q ss_pred ccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCC-CcccCCCCCCCCce
Q 001416 341 EHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA-VAPLPTPSGSRDHS 419 (1081)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~-~~~~~~~~~~~~~~ 419 (1081)
... ..-..+.+|.+ .|..++|+|+ ++++|+-+.||.+ +++.+++.+. +..-+.+-+.....
T Consensus 708 ~~~---------------~~~~~l~gHtd-qIf~~AWSpd-Gr~~AtVcKDg~~-rVy~Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 708 ANA---------------KLYSRLVGHTD-QIFGIAWSPD-GRRIATVCKDGTL-RVYEPRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred hhh---------------hhhheeccCcC-ceeEEEECCC-CcceeeeecCceE-EEeCCCCCCCccccCCCCccCccee
Confidence 863 22235778998 9999999999 7778999999996 9999988654 44444455555556
Q ss_pred EEEEecCcEE-EEEEe
Q 001416 420 AVYIVERELK-LVNFQ 434 (1081)
Q Consensus 420 ~~~~~~~~l~-l~~~~ 434 (1081)
+.|+.++.+. ...|+
T Consensus 770 i~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFD 785 (1012)
T ss_pred EEEEecCcEEEEeccc
Confidence 7888777754 34443
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=6.8e-13 Score=154.25 Aligned_cols=330 Identities=22% Similarity=0.330 Sum_probs=231.6
Q ss_pred eeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCccceEEe---ccCCC-eEEEeecCCCCCcee
Q 001416 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-VIYELKAGGVDQRRLV---GAKLE-KLAEGELEHKGKPTE 80 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~-~i~~~~~~~~~~v~~v---s~~~~-~lasg~~d~~~~~~~ 80 (1081)
.+.+|...+.++.|++.+..++.++.|+.+.+|+...+. .+..+...+...+..+ .+++. .+...
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 129 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS---------- 129 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc----------
Confidence 467899999999999999999999999999999998887 6666664332111111 22333 11111
Q ss_pred eecCCceEEEEEeCCeEEEEEcCC-CccccccccccccCCCCCeeecccCCCCCeEEEEEe--cCcEEEEEecCCCcccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWR-NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC--VNKAIFLDLVTMRGRDI 157 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~-~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s--~d~~i~wd~~t~~~~~~ 157 (1081)
+ ..|+.+++|+... .. .......| ...|..++|+|+++ .++.++ ++.+..|+..+. ..+
T Consensus 130 ----~------~~d~~~~~~~~~~~~~----~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 191 (466)
T COG2319 130 ----S------SLDGTVKLWDLSTPGK----LIRTLEGH-SESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTG--KPL 191 (466)
T ss_pred ----C------CCCccEEEEEecCCCe----EEEEEecC-cccEEEEEECCCCC-EEEecCCCCCceEEEEcCCC--ceE
Confidence 1 1488999999987 32 13344455 67788999999998 555555 444556998873 344
Q ss_pred cccccCCCCeeEEEEeeccccCCCC-EEEEEECCCeEEEEEcCCCeEEE-EEecccccceEEEEEeeeCCCCCEEEEEeC
Q 001416 158 PKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1081)
Q Consensus 158 ~~~~~~~~~I~~ia~~p~~~sp~~~-~l~sgs~Dg~I~lwd~~~~~~~~-~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~ 235 (1081)
.....|...+.+++| +|++. .+++++.|+.|++||...+..+. .+. +|...+ ... +++++..+++++.
T Consensus 192 ~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~ 261 (466)
T COG2319 192 STLAGHTDPVSSLAF-----SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSS---FSPDGSLLASGSS 261 (466)
T ss_pred EeeccCCCceEEEEE-----cCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEe---ECCCCCEEEEecC
Confidence 445668999999999 56777 55565999999999998787777 454 787775 333 5888889999999
Q ss_pred CCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC
Q 001416 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1081)
Q Consensus 236 Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~ 315 (1081)
|+.+++|+....... ...+.+|...|.++.|+| ++..+++++.|+.+++||..+........ ...|..
T Consensus 262 d~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~ 329 (466)
T COG2319 262 DGTIRLWDLRSSSSL-----LRTLSGHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEG 329 (466)
T ss_pred CCcEEEeeecCCCcE-----EEEEecCCccEEEEEECC---CCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCC
Confidence 999999999876641 112267889999999999 78888889999999999998887665542 246777
Q ss_pred CeEEEeecCCCCE-EEE-ECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEE-EEC
Q 001416 316 ASWCHPRAPNLDI-LTC-VKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT-GTN 390 (1081)
Q Consensus 316 ~v~~v~~spd~~l-ls~-s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llat-gs~ 390 (1081)
.+..+.+.+++.. ..+ ..|+ .+|+..... . .........+..+.+.+ . ..+.. +..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 390 (466)
T COG2319 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------------P--LKTLEGHSNVLSVSFSP-D-GRVVSSGST 390 (466)
T ss_pred ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------------e--eEEecCCceEEEEEECC-C-CCEEEEecC
Confidence 7888888434243 344 4554 457776421 0 11111121278899999 6 44444 788
Q ss_pred CCeEEEEeCCCCCCC
Q 001416 391 VGVIISEFDPRSLPA 405 (1081)
Q Consensus 391 dG~Il~iwd~~~~~~ 405 (1081)
++.+ .+|+......
T Consensus 391 ~~~~-~~~~~~~~~~ 404 (466)
T COG2319 391 DGTV-RLWDLSTGSL 404 (466)
T ss_pred CCce-EEEecccCee
Confidence 8886 8999775433
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.64 E-value=6.1e-15 Score=159.72 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=183.3
Q ss_pred CCCeeecccCCCCC-eEEEEEecCcEE-EEEecCCC--cccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEE
Q 001416 120 TSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVTMR--GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~-~~l~s~s~d~~i-~wd~~t~~--~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~l 195 (1081)
...|++++|+|..+ .++++|...+.+ +||+.+.+ ...+..+..|..+|.++.|+|. +...+++.|.||+|++
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----NTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC----ChhheeeeccCceeee
Confidence 67899999999876 688888887777 69996322 2345567789999999999763 4567999999999999
Q ss_pred EEcCCCeEEEEEec-ccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeee
Q 001416 196 LSMISWKLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1081)
Q Consensus 196 wd~~~~~~~~~~~~-~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 274 (1081)
-|++....-..+.. .......++. ++.+...++.+..=|...+||.+++....+ .+.-|+..|++|+++|.
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d---~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~-----~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLD---FSAESRSVLFGDNVGNFNVIDLRTDGSEYE-----NLRLHKKKITSVALNPV 333 (498)
T ss_pred eeecchhhHHHhhcCccceeeeecc---ccCCCccEEEeecccceEEEEeecCCccch-----hhhhhhcccceeecCCC
Confidence 99986533222210 2333444554 566667777788888999999998774222 35678899999999994
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EEEEECCc--eEEEeccCCccccccc
Q 001416 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDS--HIWAIEHPTYSALTRP 351 (1081)
Q Consensus 275 ~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~--~IWdi~~~~~~~~~~~ 351 (1081)
...+|+|+|.|++.+|||++.-..-.. |.-....|...|.+..|||++- +++.+.|. ||||...- ...
T Consensus 334 --~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~--sa~--- 404 (498)
T KOG4328|consen 334 --CPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI--SAK--- 404 (498)
T ss_pred --CchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc--ccc---
Confidence 778999999999999999976432221 2223467999999999999765 67778775 78998510 000
Q ss_pred ccccCCCCCCeEEccCCC---c--cEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 352 LCELSSLVPPQVLAHHKK---L--RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~---~--~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
..+..++ .|.. . -.....|+|+ .++|++|-.-.-| -++|....+.++.+
T Consensus 405 ------~~p~~~I-~Hn~~t~RwlT~fKA~W~P~-~~li~vg~~~r~I-Dv~~~~~~q~v~el 458 (498)
T KOG4328|consen 405 ------DEPLGTI-PHNNRTGRWLTPFKAAWDPD-YNLIVVGRYPRPI-DVFDGNGGQMVCEL 458 (498)
T ss_pred ------CCcccee-eccCcccccccchhheeCCC-ccEEEEeccCcce-eEEcCCCCEEeeec
Confidence 1111111 1111 0 1234689997 8899999888886 88887766655554
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.4e-16 Score=183.85 Aligned_cols=204 Identities=15% Similarity=0.233 Sum_probs=158.6
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEc
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~ 198 (1081)
.+.|..+.|++.+.+++++|++++-+ +||++..+...........+.|.|++|+ ......|++++.+|.+.|||+
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN----rkvqhILAS~s~sg~~~iWDl 191 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN----RKVSHILASGSPSGRAVIWDL 191 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc----hhhhHHhhccCCCCCceeccc
Confidence 77789999999988899999888777 5999875422111122345789999995 234557999999999999999
Q ss_pred CCCeEEEEEeccccc--ceEEEEEeeeCCCCCEEEEEeCCC---cEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 199 ISWKLVRRYTGGHKG--SISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 199 ~~~~~~~~~~~~h~~--~V~~l~w~~~s~d~~~l~sgs~Dg---~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
+..+.+-.+. .|.. .+..+.|+ +.+...+++++.|. .|.+||++... .+..++++|..+|.++.|++
T Consensus 192 r~~~pii~ls-~~~~~~~~S~l~Wh--P~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 192 RKKKPIIKLS-DTPGRMHCSVLAWH--PDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred cCCCcccccc-cCCCccceeeeeeC--CCCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCC
Confidence 9877776664 3433 46788884 55566777777664 68999998765 24556799999999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EE-EEECCce--EEEeccC
Q 001416 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH--IWAIEHP 343 (1081)
Q Consensus 274 ~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-ll-s~s~D~~--IWdi~~~ 343 (1081)
.|..+|+|++.|+.|.+|+.++++.+..+ ....+++..+.|.|... ++ +++-||+ |+.+...
T Consensus 264 --~D~~lllSsgkD~~ii~wN~~tgEvl~~~------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 264 --QDPRLLLSSGKDNRIICWNPNTGEVLGEL------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred --CCchhhhcccCCCCeeEecCCCceEeeec------CCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 47799999999999999999999988776 55677899999999888 55 5677875 7887653
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=2.6e-14 Score=146.47 Aligned_cols=255 Identities=16% Similarity=0.136 Sum_probs=178.6
Q ss_pred CeeecccC--CCCCeEEEEEec-----CcEEE--EEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCe
Q 001416 122 GFASPPPS--TKGRHFLVICCV-----NKAIF--LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1081)
Q Consensus 122 ~V~sl~fs--p~g~~~l~s~s~-----d~~i~--wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~ 192 (1081)
.+.++.|+ |+.+..++.|+- +++-+ .|-.+++...... ..|.-+++.+.|.|........+||+. +..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 35666666 455667787773 33333 4544443322222 356789999999874211122345555 446
Q ss_pred EEEEEcCC--CeEE--EEE----ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCC
Q 001416 193 IRVLSMIS--WKLV--RRY----TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1081)
Q Consensus 193 I~lwd~~~--~~~~--~~~----~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~ 264 (1081)
+|+|.+.. .+.. ..+ ...+..++++..| +.-+.+++.++|.|-++.|||++++..- ..+..|-+|.+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDK 197 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDK 197 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCc
Confidence 99999863 2111 111 2357789999999 5778889999999999999999987321 12446889999
Q ss_pred cEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-EE-EEECC---ceEEE
Q 001416 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKD---SHIWA 339 (1081)
Q Consensus 265 ~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-ll-s~s~D---~~IWd 339 (1081)
.|..++|.. +....++|.|.||.||++|++..+...-+-. -.....+...++|++... ++ +-..| ..|-|
T Consensus 198 EV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~leHSTIIYE---~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 198 EVYDIAFLK--GSRDVFASVGADGSVRMFDLRSLEHSTIIYE---DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred ceeEEEecc--CccceEEEecCCCcEEEEEecccccceEEec---CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 999999998 4678999999999999999987654333211 112144667888988665 44 33444 45788
Q ss_pred eccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCC
Q 001416 340 IEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1081)
Q Consensus 340 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~ 405 (1081)
++.+ ..|+..+.+|.. .|+.++|.|..+..|+++++|..+ .+||+...+.
T Consensus 273 iR~P--------------~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~ 322 (364)
T KOG0290|consen 273 IRVP--------------CTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPR 322 (364)
T ss_pred ecCC--------------CcceehhhcCcc-cccceEecCCCCceeeecCCcceE-EEEecccccc
Confidence 8864 677788999998 999999999989999999999997 6999876443
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.2e-14 Score=155.46 Aligned_cols=250 Identities=12% Similarity=0.115 Sum_probs=183.4
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEE
Q 001416 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1081)
Q Consensus 11 ~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~ 89 (1081)
..+|.+..|+|+|. .+++++....++.||+++.+..+--...
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~------------------------------------- 299 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY------------------------------------- 299 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC-------------------------------------
Confidence 46789999999998 9999999999999999876543322211
Q ss_pred EEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeE
Q 001416 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVC 169 (1081)
Q Consensus 90 v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ 169 (1081)
++....+.....+|+++.+++.|..+.+.+....|++... .-.-.+.|..
T Consensus 300 ---------------------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~---s~KieG~v~~ 349 (514)
T KOG2055|consen 300 ---------------------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT---SFKIEGVVSD 349 (514)
T ss_pred ---------------------------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh---eeeeccEEee
Confidence 0101223455567888855566666666677777654222 2223467899
Q ss_pred EEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCc
Q 001416 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1081)
Q Consensus 170 ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~ 249 (1081)
++| +.+++.|+.++.+|.|.+||++...+++.+. ..+.|..... ..++++.+||+||..|.|.|||.++-..
T Consensus 350 ~~f-----sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~--D~G~v~gts~-~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 350 FTF-----SSDSKELLASGGTGEVYVWNLRQNSCLHRFV--DDGSVHGTSL-CISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EEE-----ecCCcEEEEEcCCceEEEEecCCcceEEEEe--ecCccceeee-eecCCCceEEeccCcceEEEeccchhhc
Confidence 999 6789999999999999999999999999986 4445544431 2689999999999999999999776444
Q ss_pred ccccccceeecccCCcEEEEEEeeecCCCCEEEEEEC--CCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC
Q 001416 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA--DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1081)
Q Consensus 250 ~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~--Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ 327 (1081)
-....|..++..-...|+++.|+| +.++|+.+|. +..+|+-.+.+......+. .....-+.|+|++|+|.+.
T Consensus 422 s~~PkPik~~dNLtt~Itsl~Fn~---d~qiLAiaS~~~knalrLVHvPS~TVFsNfP---~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 422 STNPKPIKTVDNLTTAITSLQFNH---DAQILAIASRVKKNALRLVHVPSCTVFSNFP---TSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred cCCCCchhhhhhhheeeeeeeeCc---chhhhhhhhhccccceEEEeccceeeeccCC---CCCCcccceEEEEecCCCc
Confidence 334446666666678899999999 9999987775 7889999988776655552 2334445799999999999
Q ss_pred EEEEECC-ce--EEEec
Q 001416 328 ILTCVKD-SH--IWAIE 341 (1081)
Q Consensus 328 lls~s~D-~~--IWdi~ 341 (1081)
+++.|.+ ++ +|.+.
T Consensus 496 ~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 496 YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEeecCCCceeeEeec
Confidence 8876655 54 78765
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=2e-14 Score=149.77 Aligned_cols=253 Identities=16% Similarity=0.187 Sum_probs=177.0
Q ss_pred CCCeeecccCCC---CCeEEEEEecCcEEE-EEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEE
Q 001416 120 TSGFASPPPSTK---GRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1081)
Q Consensus 120 ~~~V~sl~fsp~---g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~l 195 (1081)
......++|+-+ ++.++++++.-++++ +|+.+++ ......+|+..|+.+.++| .+.++++++|.|..||+
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p----~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHP----DRPQLVLSASKDHSVRL 162 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--hccceeccCccchhhhcCC----CCCcEEEEecCCceEEE
Confidence 445666677543 445777777777775 8998864 5566889999999999976 34578999999999999
Q ss_pred EEcCCCeEEEEEe--cccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccc---------------------c
Q 001416 196 LSMISWKLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR---------------------E 252 (1081)
Q Consensus 196 wd~~~~~~~~~~~--~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~---------------------~ 252 (1081)
||+++..++..|- .||.+.|.++. ++.++..++|++.|.++++|++...+... .
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD---~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVD---FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEE---EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 9999999998873 37999999999 59999999999999999999998432110 0
Q ss_pred cccce-eecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEEC-CCCceeeEecCCC-------ccccCCCCeEEEee-
Q 001416 253 LVPKL-SLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT-VSFKELRRIKPVP-------KLACHSVASWCHPR- 322 (1081)
Q Consensus 253 ~~~~~-~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl-~t~~~~~~~~~~~-------~~~~h~~~v~~v~~- 322 (1081)
.-|.+ +-.-|...|-|+.|. +++++|-|-++.|..|.. +-++.+...++.. .+.-....+|-+.|
T Consensus 240 ~fp~fst~diHrnyVDCvrw~-----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWF-----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred ccccccccccccchHHHHHHH-----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 00111 224578888888884 479999999999999987 3233322222211 12223345665554
Q ss_pred -cCCCCEEEEECC-c--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 323 -APNLDILTCVKD-S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 323 -spd~~lls~s~D-~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
.|-+++|+++.. + .+||++........ ..........|...+|+.+ +.+|+..++||+| .-|
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t------------tl~~s~~~~tVRQ~sfS~d-gs~lv~vcdd~~V-wrw 380 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCT------------TLTHSKSGSTVRQTSFSRD-GSILVLVCDDGTV-WRW 380 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCccCc------------eEEeccccceeeeeeeccc-CcEEEEEeCCCcE-EEE
Confidence 556677766544 4 57999864221111 1122233447888999998 6677888999997 788
Q ss_pred CC
Q 001416 399 DP 400 (1081)
Q Consensus 399 d~ 400 (1081)
|.
T Consensus 381 dr 382 (385)
T KOG1034|consen 381 DR 382 (385)
T ss_pred Ee
Confidence 83
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=2e-14 Score=152.88 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=162.7
Q ss_pred cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-------eEEEEEecccccceEEEEEeeeCCCCC
Q 001416 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1081)
Q Consensus 156 ~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-------~~~~~~~~~h~~~V~~l~w~~~s~d~~ 228 (1081)
..+...+|..+|..++|+| .+...||+||+|.+|.||++..+ +.+..+. ||...|.-++|+ +.-.+
T Consensus 73 ~~P~v~GHt~~vLDi~w~P----fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wH--PtA~N 145 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCP----FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWH--PTAPN 145 (472)
T ss_pred CCCCccCccccccccccCc----cCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeec--ccchh
Confidence 5566789999999999987 46678999999999999999543 4456666 999999999985 66677
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCC
Q 001416 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1081)
Q Consensus 229 ~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~ 308 (1081)
.|+|++.|.+|.+||+.++..+- ++. |..-|.++.|+. +|.+|+|++.|+.|+|||.++++.+..-
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali------~l~-hpd~i~S~sfn~---dGs~l~TtckDKkvRv~dpr~~~~v~e~---- 211 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALI------TLD-HPDMVYSMSFNR---DGSLLCTTCKDKKVRVIDPRRGTVVSEG---- 211 (472)
T ss_pred hHhhccCCceEEEEeccCCceee------ecC-CCCeEEEEEecc---CCceeeeecccceeEEEcCCCCcEeeec----
Confidence 99999999999999999998543 345 999999999998 9999999999999999999999988763
Q ss_pred ccccCCC-CeEEEeecCCCCEEEEECCc------eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCC
Q 001416 309 KLACHSV-ASWCHPRAPNLDILTCVKDS------HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQ 381 (1081)
Q Consensus 309 ~~~~h~~-~v~~v~~spd~~lls~s~D~------~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~ 381 (1081)
.+|.+ .-..+.|-.+|.+++.|... .+||-..- ..|+....-.....|.-=-|.|+.
T Consensus 212 --~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl--------------~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 212 --VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL--------------EEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred --ccccCCCcceeEEeccCceeeeccccccccceeccCcccc--------------cCcceeEEeccCCceEEeeecCCC
Confidence 45655 23366788888887765431 37887652 112111111222245555677886
Q ss_pred CeEEEEEECCCeEEEEeCCCCCCC
Q 001416 382 PHLVATGTNVGVIISEFDPRSLPA 405 (1081)
Q Consensus 382 ~~llatgs~dG~Il~iwd~~~~~~ 405 (1081)
+.+..+|-.||.| +.|.+...++
T Consensus 276 ~ivYl~GKGD~~I-RYyEit~d~P 298 (472)
T KOG0303|consen 276 SIVYLCGKGDSSI-RYFEITNEPP 298 (472)
T ss_pred CEEEEEecCCcce-EEEEecCCCc
Confidence 7777899999997 9998775443
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-12 Score=152.98 Aligned_cols=233 Identities=12% Similarity=0.154 Sum_probs=161.0
Q ss_pred ccceeeCCCCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe-------------ccCCC
Q 001416 2 LRLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV-------------GAKLE 65 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~lafsp~g~---~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v-------------s~~~~ 65 (1081)
+.++.|.+|...++++.+.|... ++.+++.||.|++||+..+.+++++..+-.-.+... +....
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~ 127 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY 127 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence 34678999999999999998754 778999999999999999999998875321111111 11111
Q ss_pred e-EEEeecCC---------------CC---------CceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCC
Q 001416 66 K-LAEGELEH---------------KG---------KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVT 120 (1081)
Q Consensus 66 ~-lasg~~d~---------------~~---------~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~ 120 (1081)
. +...+.+- .+ +++....++.+..+. .+..+.+|...+.. .........-|+.
T Consensus 128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHT 205 (792)
T ss_pred eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhc
Confidence 1 11110000 00 111222234444443 57778889888765 2222233333336
Q ss_pred CCeeecccCCCCCeEEEEEecCcEEEE-Eec-CCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEc
Q 001416 121 SGFASPPPSTKGRHFLVICCVNKAIFL-DLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1081)
Q Consensus 121 ~~V~sl~fsp~g~~~l~s~s~d~~i~w-d~~-t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~ 198 (1081)
..+++.++||.++.+.++..++++.+| |.. .........+..|.+.|.+++| +++|.+|++|+..|.+.+|.+
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f-----S~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF-----SSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE-----ecCCceEeecccceEEEEEee
Confidence 668999999999855555556666678 444 2333445567889999999999 789999999999999999999
Q ss_pred CCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC
Q 001416 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1081)
Q Consensus 199 ~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~ 246 (1081)
.+++ ++|.+.-.++|..+. .+||+++.+....|+.|.+-...+
T Consensus 281 ~T~~--kqfLPRLgs~I~~i~---vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 281 ETGK--KQFLPRLGSPILHIV---VSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred cCCC--cccccccCCeeEEEE---EcCCCCeEEEEecCceEEEEeccc
Confidence 9887 555556788999998 589999999999999999987744
No 175
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=187.17 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=155.6
Q ss_pred ccEEEEeecccccc--CCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 667 QNFQLYSWETFQPV--GGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~--~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
||||+++-+..+.- .....|+-..+--+|.|++-|. -|...|||..|-- .||..-+---.+++|-.
T Consensus 417 VAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AIiTqwCeG-sSLY~hlHv~etkfdm~------- 488 (678)
T KOG0193|consen 417 VAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPLAIITQWCEG-SSLYTHLHVQETKFDMN------- 488 (678)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCceeeeehhccC-chhhhhccchhhhhhHH-------
Confidence 89999988765543 1133566678888999999999 5666999999976 56763222112222211
Q ss_pred ccCceE-EEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccC
Q 001416 741 TPTTIE-CVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 741 t~~~i~-~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+.|. +--|.+||-|||--.| |--|||.|...+..=.+|||||||.+.+..=.-...-....--++ |.|
T Consensus 489 --~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsil--------wmA 558 (678)
T KOG0193|consen 489 --TTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLL--------WMA 558 (678)
T ss_pred --HHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchh--------hhc
Confidence 0111 2245679999999888 999999999999989999999999998543211100000111234 999
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
||+.|+... ..-+++.|||+|||.+||+.+|..||.+..-+ ..++.+|- + |
T Consensus 559 PEvIRmqd~--------nPfS~qSDVYaFGiV~YELltg~lPysi~~~d-------qIifmVGr--G--~---------- 609 (678)
T KOG0193|consen 559 PEVIRMQDD--------NPFSFQSDVYAFGIVWYELLTGELPYSIQNRD-------QIIFMVGR--G--Y---------- 609 (678)
T ss_pred HHHHhhccc--------CCCCcccchhhhhHHHHHHHhCcCCcCCCChh-------heEEEecc--c--c----------
Confidence 999885321 11345589999999999999999999733222 33444431 1 0
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...++..+.-.|+-+..+|...||.-.+.+||.|.+|-..|+.+
T Consensus 610 l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l 653 (678)
T KOG0193|consen 610 LMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEEL 653 (678)
T ss_pred cCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHh
Confidence 11222334447888899999999999999999999998766644
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.4e-14 Score=146.70 Aligned_cols=290 Identities=16% Similarity=0.216 Sum_probs=185.8
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~ 81 (1081)
+..|++|.+.|+|+-|..+++ |.+|...|.|++|++++...+..+...+...+..+ -|++.+..-
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tq------------ 73 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQ------------ 73 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhc------------
Confidence 345779999999999998875 88999999999999999888777775544433333 222222222
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCC-----CCC---eEEEEEecCcEE--EEEecC
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGR---HFLVICCVNKAI--FLDLVT 151 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp-----~g~---~~l~s~s~d~~i--~wd~~t 151 (1081)
+ .|..+.+|++..+.... .| .-.++++.|.+ +++ .+++.-+.+.-. +-|.-.
T Consensus 74 ---g-------Rd~~L~lw~ia~s~~i~-------i~-Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~ 135 (323)
T KOG0322|consen 74 ---G-------RDPLLILWTIAYSAFIS-------IH-SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD 135 (323)
T ss_pred ---C-------CCceEEEEEccCcceEE-------Ee-eeeccccccccceeccCCCcchhheecCCcccchhhhhccCc
Confidence 2 48889999987754321 11 11223333322 211 112211111111 111111
Q ss_pred CCccccc--ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEe---------cccccceEEEEE
Q 001416 152 MRGRDIP--KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT---------GGHKGSISCLMT 220 (1081)
Q Consensus 152 ~~~~~~~--~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~---------~~h~~~V~~l~w 220 (1081)
.....+. ......+.+.|..+--. .....+++.|-++|.+.+||+.++..+-.+. ..|..+|+++.
T Consensus 136 ~tqv~i~dd~~~~Klgsvmc~~~~~~--c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld- 212 (323)
T KOG0322|consen 136 TTQVQIADDSERSKLGSVMCQDKDHA--CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD- 212 (323)
T ss_pred cceeEccCchhccccCceeeeecccc--ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee-
Confidence 0000111 11234467888876211 1122357788899999999998874333221 26999999998
Q ss_pred eeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCce
Q 001416 221 FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1081)
Q Consensus 221 ~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~ 300 (1081)
+.+.-+.=++|+.+..+..|+++.....-.... .+.-.+-+|..+...| |++.++|++.|+.||||..++.++
T Consensus 213 --yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~--e~~lknpGv~gvrIRp---D~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 213 --YASSCDRGISGGADDKLVMYSLNHSTGSLQIRK--EITLKNPGVSGVRIRP---DGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred --echhhcCCcCCCccccceeeeeccccCcccccc--eEEecCCCccceEEcc---CCcEEeecccCCcEEEEEeccCCc
Confidence 345555567788888999999876422111111 1222345688899999 999999999999999999998887
Q ss_pred eeEecCCCccccCCCCeEEEeecCCCCEE-EEECCce--EEEe
Q 001416 301 LRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1081)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~~--IWdi 340 (1081)
+.. +..|...|.+++|+|+..++ ++|.|.+ +|++
T Consensus 286 LAV------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAV------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhh------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 765 48899999999999998877 6888976 6875
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.9e-14 Score=146.74 Aligned_cols=243 Identities=16% Similarity=0.242 Sum_probs=157.0
Q ss_pred EEEEEecCcEE-EEEecCCCcccccccccCC-CCeeEEEEeeccccCCCCEEEEEE----CCCeEEEEEcCCCeE-EEEE
Q 001416 135 FLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KSLVCMEFLSRSAVGDVPLVAFGS----SDGVIRVLSMISWKL-VRRY 207 (1081)
Q Consensus 135 ~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~-~~I~~ia~~p~~~sp~~~~l~sgs----~Dg~I~lwd~~~~~~-~~~~ 207 (1081)
.+.+++.|+.+ .||+++...........+. .+..|++- +-+++.+++|+ .|-.|.+||++..+. +..+
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~-----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~ 160 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL-----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL 160 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec-----cCcCCeEEeccccccCceEEEEEEeccccchhhhh
Confidence 44444444444 4777765433333334443 46677776 34677888886 467899999998766 7888
Q ss_pred ecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC
Q 001416 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1081)
Q Consensus 208 ~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D 287 (1081)
...|...|+++++ .+.+.++|+|||.||.|.++|+....... +....-.|...|.++.|.. +..+.|.+-+..
T Consensus 161 ~eSH~DDVT~lrF--HP~~pnlLlSGSvDGLvnlfD~~~d~EeD---aL~~viN~~sSI~~igw~~--~~ykrI~clTH~ 233 (376)
T KOG1188|consen 161 NESHNDDVTQLRF--HPSDPNLLLSGSVDGLVNLFDTKKDNEED---ALLHVINHGSSIHLIGWLS--KKYKRIMCLTHM 233 (376)
T ss_pred hhhccCcceeEEe--cCCCCCeEEeecccceEEeeecCCCcchh---hHHHhhcccceeeeeeeec--CCcceEEEEEcc
Confidence 7799999999992 68888999999999999999998764322 2223345778899999987 244578888899
Q ss_pred CeEEEEECCCCceeeEecCCCcccc----CCCCeEEEe-ecCCC-CE-EEEECC---ceEEEeccCCcccccccccccCC
Q 001416 288 KTLAIWDTVSFKELRRIKPVPKLAC----HSVASWCHP-RAPNL-DI-LTCVKD---SHIWAIEHPTYSALTRPLCELSS 357 (1081)
Q Consensus 288 g~V~iWDl~t~~~~~~~~~~~~~~~----h~~~v~~v~-~spd~-~l-ls~s~D---~~IWdi~~~~~~~~~~~~~~~~~ 357 (1081)
.+..+|+++.+.+...+........ ....-+-+. .+|.+ .. ..++.+ ++++-+.... ....
T Consensus 234 Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~---------s~~~ 304 (376)
T KOG1188|consen 234 ETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTS---------SGSL 304 (376)
T ss_pred CceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecc---------cccc
Confidence 9999999999887655422110000 000000111 22332 22 233332 3555544211 1111
Q ss_pred CCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 358 ~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
..++..+.+++.+-|..+.|... +.++.+|+.||.+ .+|..
T Consensus 305 ~~~~a~l~g~~~eiVR~i~~~~~-~~~l~TGGEDG~l-~~Wk~ 345 (376)
T KOG1188|consen 305 LTEPAILQGGHEEIVRDILFDVK-NDVLYTGGEDGLL-QAWKV 345 (376)
T ss_pred cCccccccCCcHHHHHHHhhhcc-cceeeccCCCceE-EEEec
Confidence 34445666766657888888765 7788999999996 89973
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-13 Score=162.82 Aligned_cols=357 Identities=14% Similarity=0.149 Sum_probs=206.7
Q ss_pred ceeeCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-------EEEEEecCCccceEEe--ccCCCeEEEeecC
Q 001416 4 LKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQ-------VIYELKAGGVDQRRLV--GAKLEKLAEGELE 73 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g-~~Lasgs~dg~I~IWd~~t~~-------~i~~~~~~~~~~v~~v--s~~~~~lasg~~d 73 (1081)
+..+..|+..|..++.++.. .+++||+.||+|++||...-. ...++.. ....+..+ -+.++.+|.++
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t-- 1117 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST-- 1117 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc--
Confidence 55678899999999988766 899999999999999986321 1111221 11112222 34455555543
Q ss_pred CCCCceeeecCCceEEEEEeCCeEEEEEcCCCccc---cccccccccCCCC-CeeecccCCCCCe-EEEEEe-cCcEEEE
Q 001416 74 HKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA---AAEAPTAVSNVTS-GFASPPPSTKGRH-FLVICC-VNKAIFL 147 (1081)
Q Consensus 74 ~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~---~~~~~~~~~h~~~-~V~sl~fsp~g~~-~l~s~s-~d~~i~w 147 (1081)
.||.|++.++.-.+.. .........+..+ .|..-+|....+. .++.+. .++++.|
T Consensus 1118 -------------------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1118 -------------------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred -------------------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 6888888887652211 1111122222223 3444445443332 444444 4555569
Q ss_pred EecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCC
Q 001416 148 DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1081)
Q Consensus 148 d~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~ 227 (1081)
|................+.|++++. +|.++++++|+..|.+.+||++-+..+..+..++..+++.+..+...+..
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~i-----dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVI-----DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEe-----cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC
Confidence 9987654334445556689999999 78899999999999999999999899988887888888888643344544
Q ss_pred CEEEEEe--CCCcEEEEEcCCCCccccccc-----ceee--c------ccCCcEEEEEEeeecCCCCEEEEEECCCeEEE
Q 001416 228 ALLVSGG--SDGLLILWSADHGQDSRELVP-----KLSL--K------AHDGGVVAVELSRVMGGSPQLITIGADKTLAI 292 (1081)
Q Consensus 228 ~~l~sgs--~Dg~V~vWd~~~~~~~~~~~~-----~~~l--~------~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~i 292 (1081)
...++++ ..+.|.+|++.++.+...+.. .... . .+.-......+.. .+..+.+|+.|..|+.
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~---~~~~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE---KNGFLLTGGSDMKIRK 1330 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc---CCceeeecCCccceee
Confidence 5555554 478899999998865332211 0000 0 1111112223332 5678999999999999
Q ss_pred EECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCc--eE-EEeccCCcccccccccccCCCCCCeEEccCCC
Q 001416 293 WDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--HI-WAIEHPTYSALTRPLCELSSLVPPQVLAHHKK 369 (1081)
Q Consensus 293 WDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~--~I-Wdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (1081)
||........ + ...+.+........+.+..++.++.-. .| .-.... .....++..... ..+...-..|..
T Consensus 1331 wD~~~p~~ss-~----~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~-~t~~~~~~~~~~-~~~~~ps~~H~d 1403 (1431)
T KOG1240|consen 1331 WDPTRPEISS-Y----AVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVG-LTEALRENQKLR-PGPSDPSTYHHD 1403 (1431)
T ss_pred ccCCCccccc-c----cccCccccccccchhccccccCCCccchhhhhhhhhcC-chhhcccccccc-cCCCCCcccccc
Confidence 9987654321 1 012222222223333333334333211 11 111110 000000000001 001111234666
Q ss_pred ccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 370 LRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 370 ~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
.|+.+++......++++++.||.| ++|.
T Consensus 1404 -~Itdma~~~~~q~llvs~s~dG~I-kiWk 1431 (1431)
T KOG1240|consen 1404 -PITDMATLKSEQPLLVSSSRDGVI-KIWK 1431 (1431)
T ss_pred -hhhhhhhhccCccEEEEecCCCee-eecC
Confidence 899999887766788999999997 9993
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.2e-12 Score=131.11 Aligned_cols=247 Identities=14% Similarity=0.223 Sum_probs=162.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEE
Q 001416 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1081)
Q Consensus 12 ~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~ 91 (1081)
..|.+-+++|.+++|+.|..+|.|-+..+.+- .+++..+.++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl------------------------~s~sa~~~gk-------------- 52 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSL------------------------DSGSAEPPGK-------------- 52 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhh------------------------hccccCCCCC--------------
Confidence 45667789999999999999999999887541 1111111100
Q ss_pred EeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCc-------ccccc--c--
Q 001416 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG-------RDIPK--Q-- 160 (1081)
Q Consensus 92 f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~-------~~~~~--~-- 160 (1081)
. .......| +.+++.++|+. .++.+|+++.+.-|..+.... +.+.. .
T Consensus 53 -----~-------------~iv~eqah-dgpiy~~~f~d---~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 53 -----L-------------KIVPEQAH-DGPIYYLAFHD---DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred -----c-------------ceeecccc-CCCeeeeeeeh---hheeeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 0 11112334 67788888862 377888886666565543321 11110 0
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
...-..|+++-. .|..+-+++++.|+.++-||+++|+..+.+. ||+++|.++. .......+.||+.||++|
T Consensus 111 ~~evPeINam~l-----dP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv---~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 111 AVEVPEINAMWL-----DPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVV---GRNANGQILSGAEDGTVR 181 (325)
T ss_pred cccCCccceeEe-----ccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeee---ecccCcceeecCCCccEE
Confidence 112246788877 5566667777799999999999999999998 9999999997 344556799999999999
Q ss_pred EEEcCCCCcccccccce---eeccc-CCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCC
Q 001416 241 LWSADHGQDSRELVPKL---SLKAH-DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~---~l~~h-~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~ 316 (1081)
+||.++++++..+.+.. .+..| .++|-+++- +..+|+.|+ ...+.+|.+++.++.+.+. +.+ .
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-----~edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa---~ 248 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-----NEDWLVCGG-GPKLSLWHLRSSESTCVFP----IPA---R 248 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEec-----cCceEEecC-CCceeEEeccCCCceEEEe----ccc---c
Confidence 99999998766543221 12333 346777776 456887765 4568999999999888772 233 3
Q ss_pred eEEEeecCCCCEEEEECCc--eEEEec
Q 001416 317 SWCHPRAPNLDILTCVKDS--HIWAIE 341 (1081)
Q Consensus 317 v~~v~~spd~~lls~s~D~--~IWdi~ 341 (1081)
+..+.|..| .++++|+.. .-|.++
T Consensus 249 v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 249 VHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eeEeeeecc-eEEEeccccceeeeeec
Confidence 445566544 344555443 345554
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=1.9e-13 Score=150.12 Aligned_cols=206 Identities=19% Similarity=0.238 Sum_probs=144.8
Q ss_pred CeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccc
Q 001416 133 RHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK 212 (1081)
Q Consensus 133 ~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~ 212 (1081)
..++++.+|+++.+.+-. + +-......|...+.|-.| +|+|.-++++++||.|++|.- +|-.-.++. ...
T Consensus 76 d~~~i~s~DGkf~il~k~-~--rVE~sv~AH~~A~~~gRW-----~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~ 145 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-A--RVERSISAHAAAISSGRW-----SPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNE 145 (737)
T ss_pred ceEEEEcCCceEEEeccc-c--hhhhhhhhhhhhhhhccc-----CCCCceeeeecCCceEEEEec-cchHHHHHh-hcC
Confidence 346666666666666433 2 233346789999999999 789999999999999999984 343322332 466
Q ss_pred cceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEE
Q 001416 213 GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI 292 (1081)
Q Consensus 213 ~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~i 292 (1081)
.+|.|++|- +...+.+.+.+ +.+.|=.+.... .....++|++-|.+++|+| ..++++||+.|-..+|
T Consensus 146 ~~v~c~~W~--p~S~~vl~c~g--~h~~IKpL~~n~------k~i~WkAHDGiiL~~~W~~---~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 146 ESIRCARWA--PNSNSIVFCQG--GHISIKPLAANS------KIIRWRAHDGLVLSLSWST---QSNIIASGGEDFRFKI 212 (737)
T ss_pred ceeEEEEEC--CCCCceEEecC--CeEEEeeccccc------ceeEEeccCcEEEEeecCc---cccceeecCCceeEEe
Confidence 799999982 43444444333 344444443332 2344689999999999999 8899999999999999
Q ss_pred EECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCceEEEeccCCcccccccccccCCCCCCeEEccCCCccE
Q 001416 293 WDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRV 372 (1081)
Q Consensus 293 WDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V 372 (1081)
||-.. ..+.+ -..|.-+|++++|.|+..++. |..+.. .+.....+.|
T Consensus 213 WD~~G-~~Lf~------S~~~ey~ITSva~npd~~~~v-------~S~nt~-------------------R~~~p~~GSi 259 (737)
T KOG1524|consen 213 WDAQG-ANLFT------SAAEEYAITSVAFNPEKDYLL-------WSYNTA-------------------RFSSPRVGSI 259 (737)
T ss_pred ecccC-ccccc------CChhccceeeeeeccccceee-------eeeeee-------------------eecCCCccce
Confidence 99764 33333 267888999999999955554 443321 1222333489
Q ss_pred EEEEEeCCCCeEEEEEECCCeEE
Q 001416 373 YCMVAHSLQPHLVATGTNVGVII 395 (1081)
Q Consensus 373 ~~l~~sp~~~~llatgs~dG~Il 395 (1081)
..++|+|| +..+++|+..|.++
T Consensus 260 fnlsWS~D-GTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 260 FNLSWSAD-GTQATCGTSTGQLI 281 (737)
T ss_pred EEEEEcCC-CceeeccccCceEE
Confidence 99999999 55669999999974
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=1.5e-13 Score=147.10 Aligned_cols=291 Identities=14% Similarity=0.160 Sum_probs=193.0
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEE
Q 001416 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1081)
Q Consensus 11 ~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~ 89 (1081)
..+|.++.|+++.. .++||+.|..|+||-+..+..- +.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~--------------------------------------~~--- 51 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG--------------------------------------GG--- 51 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC--------------------------------------CC---
Confidence 36899999999877 9999999999999998653210 00
Q ss_pred EEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEec--------C-----CCcc
Q 001416 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLV--------T-----MRGR 155 (1081)
Q Consensus 90 v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~--------t-----~~~~ 155 (1081)
+..|.. ...+..| ...|+.+.|+|+|+ ++++|++++.++ |-.. + .+.+
T Consensus 52 ----~~~V~y------------~s~Ls~H-~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w 113 (434)
T KOG1009|consen 52 ----DMKVEY------------LSSLSRH-TRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKW 113 (434)
T ss_pred ----ceeEEE------------eecccCC-cceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccce
Confidence 111111 2233344 77899999999998 999999998885 8544 2 1111
Q ss_pred -cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEe
Q 001416 156 -DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1081)
Q Consensus 156 -~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs 234 (1081)
......+|.+.|..++| +|++.++++|+-|..+++||+..|+....+. +|.++|..++| .|.++++++-+
T Consensus 114 ~v~k~lr~h~~diydL~W-----s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvaw---Dpl~qyv~s~s 184 (434)
T KOG1009|consen 114 VVKKVLRGHRDDIYDLAW-----SPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAW---DPLNQYVASKS 184 (434)
T ss_pred EEEEEecccccchhhhhc-----cCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceeec---chhhhhhhhhc
Confidence 12234678899999999 7899999999999999999999999999886 99999999997 88999999999
Q ss_pred CCCcEEEEEcCCCCccccccc--------------ceeecccC----CcEEEEEEeeecCCCCEEEEEEC----CCeE--
Q 001416 235 SDGLLILWSADHGQDSRELVP--------------KLSLKAHD----GGVVAVELSRVMGGSPQLITIGA----DKTL-- 290 (1081)
Q Consensus 235 ~Dg~V~vWd~~~~~~~~~~~~--------------~~~l~~h~----~~V~~v~fsp~~~~~~~Lvsgs~----Dg~V-- 290 (1081)
.|...+.+++...+.+..... ...+. |+ .-...++|+| +|.+|++.+. ++.+
T Consensus 185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf-hDeTlksFFrRlsfTP---dG~llvtPag~~~~g~~~~~ 260 (434)
T KOG1009|consen 185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF-HDETLKSFFRRLSFTP---DGSLLVTPAGLFKVGGGVFR 260 (434)
T ss_pred cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee-ecCchhhhhhhcccCC---CCcEEEcccceeeeCCceee
Confidence 999888887765443322110 00000 21 1234567888 8888887642 3333
Q ss_pred ---EEEECCCCceeeEecCCCccccCCCCeEEEeecCC------------------CCEEE-EECCc-eEEEeccCCccc
Q 001416 291 ---AIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN------------------LDILT-CVKDS-HIWAIEHPTYSA 347 (1081)
Q Consensus 291 ---~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd------------------~~lls-~s~D~-~IWdi~~~~~~~ 347 (1081)
.+++- +.+. +|...+.+....+..+.|+|= +-+++ ++.+. .|||.+.
T Consensus 261 n~tYvfsr---k~l~--rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~----- 330 (434)
T KOG1009|consen 261 NTSYVFSR---KDLK--RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT----- 330 (434)
T ss_pred ceeEeecc---cccc--CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-----
Confidence 23332 1111 233334455555556666551 11222 33332 4666553
Q ss_pred ccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 348 LTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
..|.....+-+-..++.++|+++ +..++..+.||..
T Consensus 331 ----------~~P~~~v~nihy~~iTDiaws~d-g~~l~vSS~DGyC 366 (434)
T KOG1009|consen 331 ----------LEPLAVVDNIHYSAITDIAWSDD-GSVLLVSSTDGFC 366 (434)
T ss_pred ----------ccceEEEeeeeeeeecceeecCC-CcEEEEeccCCce
Confidence 34444444434348999999998 5666888889873
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=164.77 Aligned_cols=278 Identities=14% Similarity=0.162 Sum_probs=199.4
Q ss_pred ccceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceee
Q 001416 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~ 81 (1081)
..++.+.||.+.|.|+.|...|.+++||+.|..++||..+++.++.+...+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh----------------------------- 231 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH----------------------------- 231 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-----------------------------
Confidence 346778999999999999999999999999999999999887766655532
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQ 160 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~ 160 (1081)
.+.|+.++.+.+. .++++++.|.+++ |.+..+. .+..+
T Consensus 232 --------------------------------------s~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--pvsvL 270 (1113)
T KOG0644|consen 232 --------------------------------------SGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--PVSVL 270 (1113)
T ss_pred --------------------------------------ccccchhccchhh-hhhhhcccCceEEEEecCCCc--hHHHH
Confidence 3334555555544 4889999999996 9888764 56668
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEE----ecccccceEEEEEeeeCCCCCEEEEEeCC
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY----TGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~----~~~h~~~V~~l~w~~~s~d~~~l~sgs~D 236 (1081)
.+|.+.|++++|.| - .+.+.||++++||++ +...... ......-+.++. +-..+.-++||+.|
T Consensus 271 rghtgavtaiafsP-----~----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~---~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 271 RGHTGAVTAIAFSP-----R----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSIL---FENNGDRFLTGSRD 337 (1113)
T ss_pred hccccceeeeccCc-----c----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeee---ccccccccccccCC
Confidence 89999999999955 2 277899999999997 2222111 111234455554 56778889999999
Q ss_pred CcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCC
Q 001416 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1081)
Q Consensus 237 g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~ 316 (1081)
+.-..|.+.. +..|...+.-+.++. +...+.+++-.+-.+++|++.+|..++.+ .+|...
T Consensus 338 ~ea~n~e~~~------------l~~~~~~lif~t~ss--d~~~~~~~ar~~~~~~vwnl~~g~l~H~l------~ghsd~ 397 (1113)
T KOG0644|consen 338 GEARNHEFEQ------------LAWRSNLLIFVTRSS--DLSSIVVTARNDHRLCVWNLYTGQLLHNL------MGHSDE 397 (1113)
T ss_pred cccccchhhH------------hhhhccceEEEeccc--cccccceeeeeeeEeeeeecccchhhhhh------cccccc
Confidence 9999887654 233444443344433 23357777888999999999999877654 899999
Q ss_pred eEEEeecCCCCEE--EEECCce--EEEeccCCcccccccccccCCCCCCeEEc-cCCCccEEEEEEeCCCCeEEEEEECC
Q 001416 317 SWCHPRAPNLDIL--TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSLQPHLVATGTNV 391 (1081)
Q Consensus 317 v~~v~~spd~~ll--s~s~D~~--IWdi~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~V~~l~~sp~~~~llatgs~d 391 (1081)
+..+.+||-+..+ +++.|+. |||+-. +.|++... +|. .+..-+|+++ +.-++...+-
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~e---------------g~pik~y~~gh~--kl~d~kFSqd-gts~~lsd~h 459 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWE---------------GIPIKHYFIGHG--KLVDGKFSQD-GTSIALSDDH 459 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeeccc---------------CCcceeeecccc--eeeccccCCC-CceEecCCCC
Confidence 9999999988754 7888874 899875 33333332 322 4566688888 4445666666
Q ss_pred CeEEEEeCCC
Q 001416 392 GVIISEFDPR 401 (1081)
Q Consensus 392 G~Il~iwd~~ 401 (1081)
|.+ .|....
T Consensus 460 gql-~i~g~g 468 (1113)
T KOG0644|consen 460 GQL-YILGTG 468 (1113)
T ss_pred Cce-EEeccC
Confidence 774 666533
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.54 E-value=5.2e-13 Score=149.53 Aligned_cols=269 Identities=16% Similarity=0.216 Sum_probs=200.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEE
Q 001416 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1081)
Q Consensus 13 ~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v 90 (1081)
.|..++|-|||..|+.+. +..+.|+|...|..+.+++ +|.+.+.++ +.+|+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~------------------- 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGS------------------- 72 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCC-------------------
Confidence 899999999999777764 4578899999999999999 667888888 99999999985
Q ss_pred EEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEE
Q 001416 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 91 ~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~i 170 (1081)
.|..|.+|+-.-.. .+...+.+.|.|+.|+|-.. .+++++-+..-.|..... .+.+ ......+.|+
T Consensus 73 --aDK~VI~W~~klEG-------~LkYSH~D~IQCMsFNP~~h-~LasCsLsdFglWS~~qK---~V~K-~kss~R~~~C 138 (1081)
T KOG1538|consen 73 --ADKSVIIWTSKLEG-------ILKYSHNDAIQCMSFNPITH-QLASCSLSDFGLWSPEQK---SVSK-HKSSSRIICC 138 (1081)
T ss_pred --CceeEEEecccccc-------eeeeccCCeeeEeecCchHH-HhhhcchhhccccChhhh---hHHh-hhhheeEEEe
Confidence 58999999854322 33333488999999999876 788888888778865542 2211 1223578899
Q ss_pred EEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEE--ecccccceEEEEEeeeCCC----CCEEEEEeCCCcEEEEEc
Q 001416 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSG----EALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~--~~~h~~~V~~l~w~~~s~d----~~~l~sgs~Dg~V~vWd~ 244 (1081)
+| ..||++++.|-.||+|.+-+-. ++....+ ..|.+.+|++++|. +.. .+.++......++.++.+
T Consensus 139 sW-----tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~--p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 139 SW-----TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWN--PSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred ee-----cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEec--CCCCCCccceEEEEeccceeEEEEe
Confidence 99 7899999999999999998754 3332222 34688999999964 322 247888888889988888
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
.....-.+ +.-.-...|+.|.| +|.+++.|+.|+.+++|-- .|-.+-++ .....+||.++.+|
T Consensus 211 sG~~Igk~-------r~L~FdP~CisYf~---NGEy~LiGGsdk~L~~fTR-~GvrLGTv------g~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 211 SGKQIGKD-------RALNFDPCCISYFT---NGEYILLGGSDKQLSLFTR-DGVRLGTV------GEQDSWIWTVQAKP 273 (1081)
T ss_pred cceeeccc-------ccCCCCchhheecc---CCcEEEEccCCCceEEEee-cCeEEeec------cccceeEEEEEEcc
Confidence 65332111 11223356899999 9999999999999999974 34444443 44667999999999
Q ss_pred CCCEE-EEECCceE--EEec
Q 001416 325 NLDIL-TCVKDSHI--WAIE 341 (1081)
Q Consensus 325 d~~ll-s~s~D~~I--Wdi~ 341 (1081)
+++.+ .|..||+| |++-
T Consensus 274 NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCceEEEEEccCeeehhhhH
Confidence 99976 57788864 4443
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=9.6e-13 Score=135.13 Aligned_cols=286 Identities=12% Similarity=0.126 Sum_probs=188.6
Q ss_pred CceEEEEEcC--C-CCEEEEEeC----CCcEEEEEC--CCCcEEEEEecCCccceE-Ee-ccCC-----CeEEEeecCCC
Q 001416 12 DKIVKIQLHP--T-HPWLVTADA----SDHVSVWNW--EHRQVIYELKAGGVDQRR-LV-GAKL-----EKLAEGELEHK 75 (1081)
Q Consensus 12 ~~V~~lafsp--~-g~~Lasgs~----dg~I~IWd~--~t~~~i~~~~~~~~~~v~-~v-s~~~-----~~lasg~~d~~ 75 (1081)
-.+.++.|+. + +.+||.|+. .+.|.|-.+ ++++.+..-...|.-.+. .. .|+. ..||+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT------ 118 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT------ 118 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc------
Confidence 3567888883 3 348888864 345655443 455555444333322221 11 2221 23444
Q ss_pred CCceeeecCCceEEEEEeCCeEEEEEcCCCcccccc----ccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEec
Q 001416 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAE----APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV 150 (1081)
Q Consensus 76 ~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~----~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~ 150 (1081)
.+..+|+|.+......... ......++..++++..|+.-..+++.+++-|... +||++
T Consensus 119 -----------------s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 119 -----------------SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred -----------------ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 3678999998753321111 1112344567899999998778899999988877 69999
Q ss_pred CCCcccc-cccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEE-eccc-ccceEEEEEeeeCCCC
Q 001416 151 TMRGRDI-PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGH-KGSISCLMTFMASSGE 227 (1081)
Q Consensus 151 t~~~~~~-~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~-~~~h-~~~V~~l~w~~~s~d~ 227 (1081)
++....+ ..+..|.+.|..|+|.. ..-+.+++.+.||.||+||++...-...+ +... ..+...++| +..|.
T Consensus 182 ~~~~~~vkTQLIAHDKEV~DIaf~~----~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw--nkqDp 255 (364)
T KOG0290|consen 182 TGVSGTVKTQLIAHDKEVYDIAFLK----GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW--NKQDP 255 (364)
T ss_pred eccccceeeEEEecCcceeEEEecc----CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc--CcCCc
Confidence 8732222 33578999999999942 23457999999999999999875433322 2222 567888888 57788
Q ss_pred CEEEEEeCC-CcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecC
Q 001416 228 ALLVSGGSD-GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306 (1081)
Q Consensus 228 ~~l~sgs~D-g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~ 306 (1081)
+++++-..| ..|.+.|++... .+...|++|.+.|+.++|.| .....|.|+++|..+-|||+.+--.-....|
T Consensus 256 nymATf~~dS~~V~iLDiR~P~-----tpva~L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVPC-----TPVARLRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred hHHhhhhcCCceEEEEEecCCC-----cceehhhcCcccccceEecC--CCCceeeecCCcceEEEEecccccccCCCCc
Confidence 888887665 468899998764 35667899999999999999 5788999999999999999975321111112
Q ss_pred CCccccCCCCeEEEeecCCCC-EEEEECC
Q 001416 307 VPKLACHSVASWCHPRAPNLD-ILTCVKD 334 (1081)
Q Consensus 307 ~~~~~~h~~~v~~v~~spd~~-lls~s~D 334 (1081)
..... ....|..+.|+|... .++...+
T Consensus 329 ilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 11112 445788899987544 6654433
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.4e-13 Score=144.42 Aligned_cols=263 Identities=10% Similarity=0.083 Sum_probs=182.4
Q ss_pred cceeeCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEEecCCcc--ceEEe--ccCCCeEEEeecCCCC
Q 001416 3 RLKAFRPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVD--QRRLV--GAKLEKLAEGELEHKG 76 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~lafsp~--g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~--~v~~v--s~~~~~lasg~~d~~~ 76 (1081)
.+..|++|...++.++|..+ ...+.+|+.||+|++||+++...+..+.....+ ...++ +.+.+.++.|..-
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~--- 138 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL--- 138 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc---
Confidence 35678999999999999874 458999999999999999988777666654333 22333 3355666665211
Q ss_pred CceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcc
Q 001416 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1081)
Q Consensus 77 ~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~ 155 (1081)
.. .+-.|.+||++..+. .+......+.+.|+++.|+|..+.++++|+.|+++ +||.+.....
T Consensus 139 -------~~-------s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 139 -------TR-------SDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred -------cc-------CceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 01 366789999988764 13334344488999999999999999999999999 6998765322
Q ss_pred -cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecc-----------cccc-eEEEEEee
Q 001416 156 -DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-----------HKGS-ISCLMTFM 222 (1081)
Q Consensus 156 -~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~-----------h~~~-V~~l~w~~ 222 (1081)
.+.....+...|.++.|+ ++..+.|.+-+...+..+|+++.+.+...+... -..+ |.+.
T Consensus 202 DaL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~---- 273 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH---- 273 (376)
T ss_pred hhHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc----
Confidence 222234456789999996 455567999999999999999887765544311 0112 2222
Q ss_pred eCCCCCEEEEEeC-CCcEEEEEcCCCCcccccccceeecc-cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECC
Q 001416 223 ASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1081)
Q Consensus 223 ~s~d~~~l~sgs~-Dg~V~vWd~~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~ 296 (1081)
.+.+...++.++. -++..++-+..........+...+.+ |..-|.++.|.. .+..+.||+.||.+++|...
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~---~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV---KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc---ccceeeccCCCceEEEEecC
Confidence 3556666666665 66777765553221111223445666 667788888876 78899999999999999963
No 186
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=99.53 E-value=3.7e-16 Score=178.60 Aligned_cols=221 Identities=9% Similarity=0.034 Sum_probs=158.6
Q ss_pred ccEEEEee---ccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 667 QNFQLYSW---ETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 667 ~~i~~~~~---~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
||+|.-.= .+-.-+.++..|.+-|+-.+|.|+|+|. -+-..+|+|+|+- |+|+|-|......+....+..|
T Consensus 189 VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~g-GsL~~~L~k~~~~v~~~ek~~~ 267 (474)
T KOG0194|consen 189 VAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNG-GSLDDYLKKNKKSLPTLEKLRF 267 (474)
T ss_pred eEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCC-CcHHHHHHhCCCCCCHHHHHHH
Confidence 57765432 1223344477888999999999999999 4678999999999 9999888775445777777778
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+.+.++||.|||...+ |--+-..||+++.-+++||+||||-.......... ..-.-|.= |.
T Consensus 268 --------~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~--~~~klPir--------WL 329 (474)
T KOG0194|consen 268 --------CYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKK--FLKKLPIR--------WL 329 (474)
T ss_pred --------HHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcceeecc--ccccCcce--------ec
Confidence 8899999999999888 99999999999999999999999976533111111 01123444 99
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCC-cceeeecCCCCCCCCCCCCcEEeee-ecCeEEEEecccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGG-GVAVAVTRFPTEQKRPIGPLVVVGV-KDGVLWLIDRYMC 895 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~d~~~~ 895 (1081)
|||..... .-+.+.|||||||.+.|++.. .+||. .+...+.+. .+ .++
T Consensus 330 APEtl~~~-----------~~s~kTDV~sfGV~~~Eif~~g~~Py~--g~~~~~v~~-------kI~~~~---------- 379 (474)
T KOG0194|consen 330 APETLNTG-----------IFSFKTDVWSFGVLLWEIFENGAEPYP--GMKNYEVKA-------KIVKNG---------- 379 (474)
T ss_pred ChhhhccC-----------ccccccchhheeeeEEeeeccCCCCCC--CCCHHHHHH-------HHHhcC----------
Confidence 99997432 123457999999999999874 44543 121101110 01 111
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
++...|. .++.+...+++.||..+|..||.+..|.+.|+..
T Consensus 380 ---~r~~~~~---~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~ 420 (474)
T KOG0194|consen 380 ---YRMPIPS---KTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEAL 420 (474)
T ss_pred ---ccCCCCC---CCHHHHHHHHHHhccCChhhccCHHHHHHHHHHH
Confidence 1111111 5677788899999999999999999999999876
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.52 E-value=2.2e-13 Score=141.64 Aligned_cols=230 Identities=15% Similarity=0.162 Sum_probs=169.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-Cccce---EEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEEeC
Q 001416 21 PTHPWLVTADASDHVSVWNWEHRQVIYELKAG-GVDQR---RLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYD 94 (1081)
Q Consensus 21 p~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~-~~~~v---~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~D 94 (1081)
|+..++++.+.+.-|++||.-+|+...++... |.+.+ .++ +|+|..|..| +.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----------------------yk 178 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----------------------YK 178 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----------------------cc
Confidence 66779999999999999999999998887652 33322 222 9999999887 58
Q ss_pred CeEEEEEcCCCccccccccccc---cCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEE
Q 001416 95 DDVRFWQLWRNRAAAAEAPTAV---SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 95 g~IriWdl~~~~~~~~~~~~~~---~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~i 170 (1081)
..||++|............+.. ....+.+.+++|+|-....+++++-+..+ ++.-..+ ..+..+.+|...|+.+
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHL 256 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeE
Confidence 8999999944322111111111 11256789999999887789999887766 4544433 3555677899999999
Q ss_pred EEeeccccCCCCEEEEEEC-CCeEEEEEcCC-CeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC-C
Q 001416 171 EFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-G 247 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs~-Dg~I~lwd~~~-~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~-~ 247 (1081)
.| .++|+.|++|+. |-.|..||++. ..++..+. .|...-+.--.|...|++++|++|+.||.|++||+.. +
T Consensus 257 ~~-----~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 257 QW-----CEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred Ee-----ccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 99 689999999984 77899999974 45666665 6665333222245789999999999999999999987 4
Q ss_pred CcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCe
Q 001416 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1081)
Q Consensus 248 ~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~ 289 (1081)
. +...+..|+..|+.++++| --+++++++..+.
T Consensus 331 n------~~sv~~~~sd~vNgvslnP---~mpilatssGqr~ 363 (406)
T KOG2919|consen 331 N------EVSVTGNYSDTVNGVSLNP---IMPILATSSGQRI 363 (406)
T ss_pred C------cccccccccccccceecCc---ccceeeeccCcee
Confidence 3 2334577889999999999 7888888876543
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.52 E-value=3.5e-13 Score=150.86 Aligned_cols=246 Identities=14% Similarity=0.162 Sum_probs=168.3
Q ss_pred CeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC
Q 001416 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW 201 (1081)
Q Consensus 122 ~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~ 201 (1081)
.|..++|-|||. -++.+.++++++||.+.+. .+..+.+|.+.|+|++| +.+|+.+++|+.|..|.+|+.+-
T Consensus 14 ci~d~afkPDGs-qL~lAAg~rlliyD~ndG~--llqtLKgHKDtVycVAy-----s~dGkrFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGT-QLILAAGSRLLVYDTSDGT--LLQPLKGHKDTVYCVAY-----AKDGKRFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chheeEECCCCc-eEEEecCCEEEEEeCCCcc--cccccccccceEEEEEE-----ccCCceeccCCCceeEEEecccc-
Confidence 578899999998 4555667888899998864 56678999999999999 79999999999999999998653
Q ss_pred eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEE
Q 001416 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281 (1081)
Q Consensus 202 ~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~L 281 (1081)
-..+...|...|.|+. |+|-...|+|++.. ..-+|........+ ......|.+.+|.. ||.+|
T Consensus 85 --EG~LkYSH~D~IQCMs---FNP~~h~LasCsLs-dFglWS~~qK~V~K--------~kss~R~~~CsWtn---DGqyl 147 (1081)
T KOG1538|consen 85 --EGILKYSHNDAIQCMS---FNPITHQLASCSLS-DFGLWSPEQKSVSK--------HKSSSRIICCSWTN---DGQYL 147 (1081)
T ss_pred --cceeeeccCCeeeEee---cCchHHHhhhcchh-hccccChhhhhHHh--------hhhheeEEEeeecC---CCcEE
Confidence 2223337999999998 68999999998865 35688876543221 11235688899997 99999
Q ss_pred EEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC-----EEEEECCc---eEEEeccCCc--------
Q 001416 282 ITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-----ILTCVKDS---HIWAIEHPTY-------- 345 (1081)
Q Consensus 282 vsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~-----lls~s~D~---~IWdi~~~~~-------- 345 (1081)
+.|-.||+|.|-+-. +++.-.+ ....+...+||+++|+|... +++.-.=+ ..+.++-...
T Consensus 148 alG~~nGTIsiRNk~-gEek~~I---~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F 223 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN-GEEKVKI---ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF 223 (1081)
T ss_pred EEeccCceEEeecCC-CCcceEE---eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC
Confidence 999999999998643 3333332 22356677999999998532 33221111 1222221000
Q ss_pred ccc------ccccccc-----------CCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 346 SAL------TRPLCEL-----------SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 346 ~~~------~~~~~~~-----------~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
.+. ..++.-+ ..+..+.++.. -+.+||+++.+|+ ++.++.|+.||++ .-+++
T Consensus 224 dP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-~D~WIWtV~~~PN-sQ~v~~GCqDGTi-ACyNl 292 (1081)
T KOG1538|consen 224 DPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-QDSWIWTVQAKPN-SQYVVVGCQDGTI-ACYNL 292 (1081)
T ss_pred CchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-cceeEEEEEEccC-CceEEEEEccCee-ehhhh
Confidence 000 0000000 01222334433 4459999999998 7777999999997 56654
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.4e-13 Score=152.96 Aligned_cols=258 Identities=15% Similarity=0.205 Sum_probs=181.3
Q ss_pred eeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CcEEEEEecCCccceEEe--ccCCCeEEEeecCCC
Q 001416 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--------RQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHK 75 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t--------~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~ 75 (1081)
++..|.+.|+.++|+|..+.|++++.||+|++|+++. -+++.+|.. |...+.++ ..+++.+.+|+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg---- 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGG---- 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeec----
Confidence 6778999999999999999999999999999999932 245777774 44555554 78888888875
Q ss_pred CCceeeecCCceEEEEEeCCeEEEEEcCCCcc------ccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEE
Q 001416 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRA------AAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLD 148 (1081)
Q Consensus 76 ~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~------~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd 148 (1081)
.||+|+.|++..+.- ......++.|| .+.|+.+++|+...+ |++++.|+.+ .|+
T Consensus 364 -----------------~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~~~-Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 364 -----------------IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTKDR-LLSCSSDGTVRLWE 424 (577)
T ss_pred -----------------cCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeecccccc-eeeecCCceEEeec
Confidence 699999997653221 11233456677 888999999998875 5555555555 598
Q ss_pred ecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecc------cccceEEEEEee
Q 001416 149 LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG------HKGSISCLMTFM 222 (1081)
Q Consensus 149 ~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~------h~~~V~~l~w~~ 222 (1081)
...... +........+....+++- +..-...++...-+.--+.++...+.+..+... -...+.-+.
T Consensus 425 ~~~~~~-~~f~~~~e~g~Plsvd~~----ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV--- 496 (577)
T KOG0642|consen 425 PTEESP-CTFGEPKEHGYPLSVDRT----SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV--- 496 (577)
T ss_pred cCCcCc-cccCCccccCCcceEeec----cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE---
Confidence 776543 222333344567777772 111122222223333334444444444444211 112344454
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceee
Q 001416 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1081)
Q Consensus 223 ~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~ 302 (1081)
..|.+.+.+++..|+.|+++|..++..+.. ...|...|+++++.| ++.+|++++.|+.+++|.+....++.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s------~~a~~~svtslai~~---ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHS------MVAHKDSVTSLAIDP---NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchh------eeeccceecceeecC---CCceEEeecCCceeehhhccchheee
Confidence 478889999999999999999999986554 578999999999999 99999999999999999998877765
Q ss_pred Ee
Q 001416 303 RI 304 (1081)
Q Consensus 303 ~~ 304 (1081)
..
T Consensus 568 es 569 (577)
T KOG0642|consen 568 ES 569 (577)
T ss_pred cc
Confidence 54
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=150.23 Aligned_cols=300 Identities=17% Similarity=0.235 Sum_probs=208.5
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccce---EEe-ccCCCeEEEeecCCCCCce
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQR---RLV-GAKLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v---~~v-s~~~~~lasg~~d~~~~~~ 79 (1081)
...|.+|.+.|..|.|+..|.+|+||+.|..|.+||+.+++.+..|..+|...+ .++ ..+.+.++.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-------- 206 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-------- 206 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc--------
Confidence 457889999999999999999999999999999999999999999887775432 233 33344444433
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCccccc
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~ 158 (1081)
.||.+|+=.+...... +.....+.+.+.|.-++.-|+...-|.+++.+..+. +|+.+.......
T Consensus 207 -------------~dgqvr~s~i~~t~~~--e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 207 -------------RDGQVRVSEILETGYV--ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred -------------ccCceeeeeeccccce--ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 4777776555332211 112233334777888888888888888888888886 898876543332
Q ss_pred cc-ccCCC---CeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe------EEEEEecc-----cccceEEEEEeee
Q 001416 159 KQ-ELDNK---SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK------LVRRYTGG-----HKGSISCLMTFMA 223 (1081)
Q Consensus 159 ~~-~~~~~---~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~------~~~~~~~~-----h~~~V~~l~w~~~ 223 (1081)
.. ..+.. ....++..|. +...+++|+.|..+++||.+.-. .+..+.+. ..-.|+|++ +
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~----nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~---Y 344 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPR----NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV---Y 344 (559)
T ss_pred eeeccCCccceeeeeEecCCC----CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE---e
Confidence 22 22233 5677888542 33379999999999999986422 23444322 245688887 5
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCc-------ccccccceeecccCC--cEEEEEEeeecCCCCEEEEEECCCeEEEEE
Q 001416 224 SSGEALLVSGGSDGLLILWSADHGQD-------SRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1081)
Q Consensus 224 s~d~~~l~sgs~Dg~V~vWd~~~~~~-------~~~~~~~~~l~~h~~--~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWD 294 (1081)
+.++.-+.++-.|-.|+++.-..+.- ..+...+..++||.. .|.++-|.- +...++++||+=|.|.||+
T Consensus 345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG--PrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG--PRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc--CccceEEecCccceEEEEe
Confidence 65666666677888999995543321 011112234788864 477777753 3789999999999999999
Q ss_pred CCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEEC---CceEEEec
Q 001416 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK---DSHIWAIE 341 (1081)
Q Consensus 295 l~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~---D~~IWdi~ 341 (1081)
-.+++.++-+ .+...-|+|+.-||--++|++|+ |.+||.-.
T Consensus 423 K~t~eii~~M------egDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 423 KKTGEIIRFM------EGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred cchhHHHHHh------hcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 9999877654 44444889999999999886553 57999764
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.8e-12 Score=129.90 Aligned_cols=233 Identities=16% Similarity=0.175 Sum_probs=154.6
Q ss_pred eeecccCCCCCeEEEEEecCcE-EEEEecCCC--------cccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeE
Q 001416 123 FASPPPSTKGRHFLVICCVNKA-IFLDLVTMR--------GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~~-i~wd~~t~~--------~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I 193 (1081)
|.+-+++|.++ ++++|...+. .++.+++.. ...+....+|..+++.++|+ ..+|++|+ ||.|
T Consensus 13 vf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-------d~~Lls~g-dG~V 83 (325)
T KOG0649|consen 13 VFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-------DDFLLSGG-DGLV 83 (325)
T ss_pred HHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-------hhheeecc-CceE
Confidence 45567899988 5555555554 456654311 12334457899999999993 45667665 4999
Q ss_pred EEEEcCCCeE-------EEEEecccc-----cceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecc
Q 001416 194 RVLSMISWKL-------VRRYTGGHK-----GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1081)
Q Consensus 194 ~lwd~~~~~~-------~~~~~~~h~-----~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~ 261 (1081)
+-|.++.... .....+-|. ..|+++ | ..|..+-++.++.|+.++-||+++|+... +++|
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam-~--ldP~enSi~~AgGD~~~y~~dlE~G~i~r------~~rG 154 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM-W--LDPSENSILFAGGDGVIYQVDLEDGRIQR------EYRG 154 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCcccee-E--eccCCCcEEEecCCeEEEEEEecCCEEEE------EEcC
Confidence 9999864211 111111232 346776 3 35566666667789999999999998544 4799
Q ss_pred cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccc---cCC-CCeEEEeecCCCCEEEEECCc--
Q 001416 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA---CHS-VASWCHPRAPNLDILTCVKDS-- 335 (1081)
Q Consensus 262 h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~---~h~-~~v~~v~~spd~~lls~s~D~-- 335 (1081)
|++.|.++.-.. ....+.||+.||++|+||++++++++++.+..... .|. .+|-+++ -+...+.||...
T Consensus 155 HtDYvH~vv~R~---~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 155 HTDYVHSVVGRN---ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKL 229 (325)
T ss_pred Ccceeeeeeecc---cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCce
Confidence 999999998754 66789999999999999999999999997765432 222 2344444 445577666553
Q ss_pred eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 336 HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 336 ~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
.+|++++ ..+..+++ ... ++..+.|-.+ .+.+++....| .-|.
T Consensus 230 slwhLrs---------------se~t~vfp-ipa-~v~~v~F~~d---~vl~~G~g~~v-~~~~ 272 (325)
T KOG0649|consen 230 SLWHLRS---------------SESTCVFP-IPA-RVHLVDFVDD---CVLIGGEGNHV-QSYT 272 (325)
T ss_pred eEEeccC---------------CCceEEEe-ccc-ceeEeeeecc---eEEEeccccce-eeee
Confidence 6999987 33333442 333 6777888665 45566655554 4554
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=1.6e-10 Score=134.12 Aligned_cols=328 Identities=23% Similarity=0.367 Sum_probs=222.4
Q ss_pred ceeeCCCC-CceEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEEecCCccceEEe--ccCCCeEEEeecCCCC
Q 001416 4 LKAFRPTN-DKIVKIQL-HPTHP-WLVTADA-SDHVSVWNWEH-RQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKG 76 (1081)
Q Consensus 4 l~~l~gH~-~~V~~laf-sp~g~-~Lasgs~-dg~I~IWd~~t-~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~ 76 (1081)
+..+.++. ..+..+.+ ++++. .++..+. |+.+.+||... ...+..+.. |...+..+ ++++..++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----- 174 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGS----- 174 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCCEEEecC-----
Confidence 34455544 37788887 88887 5555444 99999999987 666666663 44444433 77777666642
Q ss_pred CceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcc
Q 001416 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1081)
Q Consensus 77 ~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~ 155 (1081)
. .|+.+++|+...+.. .....+| ...|.+++|+|++..++++++.++.+ +||...+.
T Consensus 175 --------~-------~~~~~~~~~~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-- 232 (466)
T COG2319 175 --------S-------LDGTIKLWDLRTGKP----LSTLAGH-TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-- 232 (466)
T ss_pred --------C-------CCCceEEEEcCCCce----EEeeccC-CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--
Confidence 1 289999999987442 3334444 78899999999987456664555555 59777432
Q ss_pred ccc-ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeE-EEEEecccccceEEEEEeeeCCCCCEEEEE
Q 001416 156 DIP-KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1081)
Q Consensus 156 ~~~-~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~-~~~~~~~h~~~V~~l~w~~~s~d~~~l~sg 233 (1081)
... ....|.... ...| ++++..+++++.|+.+++||...... +..+ .+|...+.++. +.|++..++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~---~~~~~~~~~~~ 302 (466)
T COG2319 233 LLRSTLSGHSDSV-VSSF-----SPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVA---FSPDGKLLASG 302 (466)
T ss_pred EEeeecCCCCcce-eEeE-----CCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEE---ECCCCCEEEEe
Confidence 232 355666554 3367 67788899999999999999986554 4444 48899999997 47788888889
Q ss_pred eCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEE-ECCCeEEEEECCCCceeeEecCCCcccc
Q 001416 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 234 s~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsg-s~Dg~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
+.|+.+++||........... ...|...+..+.| + .++..++.+ ..|+.+.+|++......... ..
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~ 369 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSF-S--PDGSLLVSGGSDDGTIRLWDLRTGKPLKTL------EG 369 (466)
T ss_pred eCCCcEEEEEcCCCceEEEee----ecccCCceEEEEE-C--CCCCEEEEeecCCCcEEeeecCCCceeEEe------cC
Confidence 999999999888776443311 2467778999999 5 144555555 68899999999887632222 11
Q ss_pred CCCCeEEEeecCCCCEE-E-EECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEE
Q 001416 313 HSVASWCHPRAPNLDIL-T-CVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1081)
Q Consensus 313 h~~~v~~v~~spd~~ll-s-~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatg 388 (1081)
+ ..+..+.+.+ .... . ++.++ .+|+....... .....+. ..+....+.++ +..++.+
T Consensus 370 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~-~~~~~~~ 430 (466)
T COG2319 370 H-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL---------------RNLDGHT-SRVTSLDFSPD-GKSLASG 430 (466)
T ss_pred C-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeee---------------eeccCCC-CcEEEEEECCC-CcEEEEe
Confidence 1 1277888888 5433 3 35554 68998753211 1111111 37888899998 6666778
Q ss_pred ECCCeEEEEeCCCC
Q 001416 389 TNVGVIISEFDPRS 402 (1081)
Q Consensus 389 s~dG~Il~iwd~~~ 402 (1081)
+.++.+ +.|+...
T Consensus 431 ~~~~~~-~~~~~~~ 443 (466)
T COG2319 431 SSDNTI-RLWDLKT 443 (466)
T ss_pred cCCCcE-EEEeccC
Confidence 888886 8999765
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=9.6e-12 Score=145.57 Aligned_cols=294 Identities=14% Similarity=0.149 Sum_probs=199.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--cEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeee
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--R--QVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t--~--~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l 82 (1081)
.|+-.++|.++||+++++|+|..||.|.+|.--. + .....++-|+ +.+.++ +++|.+|.+|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG----------- 270 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH-DEVNSLSFSSDGAYLLSGG----------- 270 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc-cccceeEEecCCceEeecc-----------
Confidence 4667799999999999999999999999997432 1 1233455444 344444 88999999875
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcc-cccccc
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR-DIPKQE 161 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~-~~~~~~ 161 (1081)
..+.+.+|.+.+++. .+-....++|..+.++||+..+.++..|+.++.....++..+ .+..+.
T Consensus 271 ----------~E~VLv~Wq~~T~~k------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 271 ----------REGVLVLWQLETGKK------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ----------cceEEEEEeecCCCc------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 488999999998872 223333677999999999998888888888887755443221 111111
Q ss_pred --------cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEe----cc------cccceEEEEEeee
Q 001416 162 --------LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT----GG------HKGSISCLMTFMA 223 (1081)
Q Consensus 162 --------~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~----~~------h~~~V~~l~w~~~ 223 (1081)
...+-.+.+++ +|.-+.++-.+..|.|.+||+.+...+..+. .. +.-.++++. .
T Consensus 335 ~~~~~~k~~~~~l~t~~~i-----dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~---~ 406 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSI-----DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA---R 406 (792)
T ss_pred CCCccccccccccceeEEE-----cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh---h
Confidence 12345567777 5655667778899999999998766555442 11 223345554 4
Q ss_pred CCCCCEEEEEe--------CC--CcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEE
Q 001416 224 SSGEALLVSGG--------SD--GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1081)
Q Consensus 224 s~d~~~l~sgs--------~D--g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iW 293 (1081)
+..|.+++|.- .| ..+|+|..........+.... ...|...+...++.+. .....+++++.||.++||
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I-~~PH~~~~vat~~~~~-~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI-NNPHGNAFVATIFLNP-TRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE-ecCCCceeEEEEEecC-cccceeEEeccCCeEEEE
Confidence 55688888763 23 357889877665433332222 3468877777776652 133389999999999999
Q ss_pred ECCCCceee------EecCCCccccCCCCeEEEeecCCCCEEEEECCc--eEEEecc
Q 001416 294 DTVSFKELR------RIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEH 342 (1081)
Q Consensus 294 Dl~t~~~~~------~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~--~IWdi~~ 342 (1081)
-+...+.+. +...+. ..|..++.+.+|+.||.+|++|.|+ .|||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~--sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIG--SYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeeee--ccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 984333221 211111 2477788999999999999998886 5899886
No 194
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=99.47 E-value=2e-17 Score=181.98 Aligned_cols=224 Identities=10% Similarity=0.056 Sum_probs=145.2
Q ss_pred CCCCccEEEEe-eccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEee
Q 001416 663 EAAPQNFQLYS-WETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~-~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~ 735 (1081)
++..++||.+. ..+.+....+..|++.++-.+|.|++.+. ....++|+|||+. |+|.+.+... ...++|..+
T Consensus 27 ~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~-g~L~~~L~~~~~~~~~~~~~ 105 (259)
T PF07714_consen 27 KNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPG-GSLDDYLKSKNKEPLSEQQR 105 (259)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TT-EBHHHHHHHTCTTTSBHHHH
T ss_pred CCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 34447888872 22222344566788888888999999998 3468999999999 9999988765 456777777
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +.++++||.|||...+ ||+|+++||++++...+|++|||+..................+.
T Consensus 106 ~~i--------~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~-------- 169 (259)
T PF07714_consen 106 LSI--------AIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPL-------- 169 (259)
T ss_dssp HHH--------HHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGG--------
T ss_pred ccc--------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence 666 7899999999999888 99999999999999999999999987641110000000011122
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.|.|||+..... .+.+.||||||++++|+++++ .|+. .++.+++ ...+.++.
T Consensus 170 ~~~aPE~~~~~~-----------~~~ksDVysfG~~l~ei~~~~~~p~~--~~~~~~~-------~~~~~~~~------- 222 (259)
T PF07714_consen 170 RYLAPEVLKDGE-----------YTKKSDVYSFGMLLYEILTLGKFPFS--DYDNEEI-------IEKLKQGQ------- 222 (259)
T ss_dssp GGS-HHHHHHSE-----------ESHHHHHHHHHHHHHHHHTTSSGTTT--TSCHHHH-------HHHHHTTE-------
T ss_pred cccccccccccc-----------cccccccccccccccccccccccccc--ccccccc-------cccccccc-------
Confidence 277888753221 344579999999999999854 5543 2221100 00011110
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
.+ ...-.|+....+++..||..+|..||++..|.+.|
T Consensus 223 ------~~---~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 223 ------RL---PIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp ------ET---TSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred ------cc---eeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 00 01113455667899999999999999999998765
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=7.6e-13 Score=147.30 Aligned_cols=213 Identities=19% Similarity=0.302 Sum_probs=147.8
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC--------CeEEEEEecccccceEEEEEeeeCCCCCEEE
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------WKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~--------~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~ 231 (1081)
...|.+.|+.++| +|..+.|++++.||+|++|+++. -+++.+|. +|.++|.|++ .++++..+.
T Consensus 290 l~s~~d~ir~l~~-----~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~---v~~n~~~~y 360 (577)
T KOG0642|consen 290 LRSHDDCIRALAF-----HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVV---VPSNGEHCY 360 (577)
T ss_pred eecchhhhhhhhc-----CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEE---ecCCceEEE
Confidence 3567788999999 56788999999999999999931 26677887 9999999998 699999999
Q ss_pred EEeCCCcEEEEEcCCCCcccc-c---ccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCC
Q 001416 232 SGGSDGLLILWSADHGQDSRE-L---VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1081)
Q Consensus 232 sgs~Dg~V~vWd~~~~~~~~~-~---~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~ 307 (1081)
+|+.||+|+.|++.....-.. . .-...+.||++.|+.+++++ ....|++++.||++++|+.....+ .++...
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc---cccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999999997653221100 0 12335789999999999998 788899999999999999876554 222110
Q ss_pred Cccc------------cCC----------------------------------CCeEEEeecCCCCEE-EEECCc--eEE
Q 001416 308 PKLA------------CHS----------------------------------VASWCHPRAPNLDIL-TCVKDS--HIW 338 (1081)
Q Consensus 308 ~~~~------------~h~----------------------------------~~v~~v~~spd~~ll-s~s~D~--~IW 338 (1081)
.... .|. ..+..+.++|.+.+. ++.+|. +++
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 0000 000 012223333333322 222222 223
Q ss_pred EeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 339 AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 339 di~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
|.. .+.++.....|.. .++++++.|+|++ +.+|+.||.+ ++|.....
T Consensus 517 dn~---------------~~~~l~s~~a~~~-svtslai~~ng~~-l~s~s~d~sv-~l~kld~k 563 (577)
T KOG0642|consen 517 DNK---------------TGKILHSMVAHKD-SVTSLAIDPNGPY-LMSGSHDGSV-RLWKLDVK 563 (577)
T ss_pred ccc---------------ccccchheeeccc-eecceeecCCCce-EEeecCCcee-ehhhccch
Confidence 332 2455555566666 8999999999555 5999999997 89986543
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.46 E-value=4.7e-11 Score=136.33 Aligned_cols=277 Identities=9% Similarity=0.014 Sum_probs=162.4
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEe-cCcEEEEEecC-CCcccccccccCCCCeeEE
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVT-MRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s-~d~~i~wd~~t-~~~~~~~~~~~~~~~I~~i 170 (1081)
.++.|++|++.+..... ...... ..+....++++|+++.+++++. ++.+..|++.. ++....... .....+..+
T Consensus 10 ~~~~I~~~~~~~~g~l~-~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i 85 (330)
T PRK11028 10 ESQQIHVWNLNHEGALT-LLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHI 85 (330)
T ss_pred CCCCEEEEEECCCCcee-eeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEE
Confidence 58999999996432111 111111 1344677899999986666655 44455688862 222222111 123356789
Q ss_pred EEeeccccCCCCEEEEEE-CCCeEEEEEcCC-C---eEEEEEecccccceEEEEEeeeCCCCCEEEEE-eCCCcEEEEEc
Q 001416 171 EFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS-W---KLVRRYTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSA 244 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs-~Dg~I~lwd~~~-~---~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sg-s~Dg~V~vWd~ 244 (1081)
++ +|+++++++++ .++.|.+||+.+ + +.+..+. +.....+++ ++|++++++++ ..++.|.+||+
T Consensus 86 ~~-----~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~---~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 86 ST-----DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSAN---IDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred EE-----CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeE---eCCCCCEEEEeeCCCCEEEEEEE
Confidence 99 78999888877 488999999963 2 2333332 223345555 58888877554 45799999999
Q ss_pred CCCCccccc-ccceeecccCCcEEEEEEeeecCCCCEEEEEEC-CCeEEEEECCC--Cc--eeeEecCCCccccCCCCeE
Q 001416 245 DHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVS--FK--ELRRIKPVPKLACHSVASW 318 (1081)
Q Consensus 245 ~~~~~~~~~-~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~-Dg~V~iWDl~t--~~--~~~~~~~~~~~~~h~~~v~ 318 (1081)
++...+... ....... .......++|+| ++++++++.. +++|.+||+.. ++ .++.+.....-..+.....
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p---dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP---NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECC---CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 864322110 0001111 124467899999 8888877776 99999999973 32 2333321111011122334
Q ss_pred EEeecCCCCEEEEE-C-Cc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 319 CHPRAPNLDILTCV-K-DS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 319 ~v~~spd~~lls~s-~-D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
.+.++|+++++..+ . ++ .+|+++..... . ........ .. ..+.++++|++.+++++...++.|
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~--~---------~~~~~~~~-~~-~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSV--L---------SFEGHQPT-ET-QPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--E---------EEeEEEec-cc-cCCceEECCCCCEEEEEEccCCcE
Confidence 68899999976333 2 33 57888642110 0 00111111 11 345689999988887777778886
Q ss_pred EEEeCCC
Q 001416 395 ISEFDPR 401 (1081)
Q Consensus 395 l~iwd~~ 401 (1081)
.+|++.
T Consensus 299 -~v~~~~ 304 (330)
T PRK11028 299 -SVYEID 304 (330)
T ss_pred -EEEEEc
Confidence 888653
No 197
>PHA02988 hypothetical protein; Provisional
Probab=99.45 E-value=7.6e-16 Score=171.73 Aligned_cols=227 Identities=9% Similarity=-0.040 Sum_probs=155.4
Q ss_pred CCCCCCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe---------eeeEEEEEecCcccccccccccccc
Q 001416 660 SPAEAAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA---------YQHYIVISSLCPQYRYLGDVAIPYA 727 (1081)
Q Consensus 660 ~~~~~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~---------~~~~~~v~~y~~~~gsl~d~~~~~~ 727 (1081)
+.++|+.++||.+....... +.....|++.++-.+|.|++.+. .+..++|+|||+. |+|.+.+.+ .
T Consensus 39 ~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~-g~L~~~l~~-~ 116 (283)
T PHA02988 39 GIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTR-GYLREVLDK-E 116 (283)
T ss_pred EEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCC-CcHHHHHhh-C
Confidence 44577889999887643222 33344678888888999999998 1357899999999 999988765 3
Q ss_pred cceeeEeeeeeEeccCceEEEeeeCCccccchh-hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCc
Q 001416 728 TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVE-TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPP 805 (1081)
Q Consensus 728 ~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s-~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~ 805 (1081)
..+.|.....+ +.++.+||.|||.. .+ |+.++++|++++....+|++|||+...-..... .. ...
T Consensus 117 ~~~~~~~~~~i--------~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~-~~----~~~ 183 (283)
T PHA02988 117 KDLSFKTKLDM--------AIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPF-KN----VNF 183 (283)
T ss_pred CCCChhHHHHH--------HHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccccc-cc----cCc
Confidence 34556555555 66889999999974 45 999999999999999999999998653111000 00 001
Q ss_pred chhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecC
Q 001416 806 MLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDG 885 (1081)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 885 (1081)
. -|+|||+..... ..-+.+.||||||++++|+++|..||...... + ++..-...+
T Consensus 184 ~--------~y~aPE~~~~~~---------~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~--~------~~~~i~~~~ 238 (283)
T PHA02988 184 M--------VYFSYKMLNDIF---------SEYTIKDDIYSLGVVLWEIFTGKIPFENLTTK--E------IYDLIINKN 238 (283)
T ss_pred c--------cccCHHHhhhcc---------ccccchhhhhHHHHHHHHHHHCCCCCCCCCHH--H------HHHHHHhcC
Confidence 1 278888875321 11234579999999999999998888522110 0 000000000
Q ss_pred eEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 886 VLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 886 ~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..++ +...|+....+++..||..+|..||+++.|-+.|+..
T Consensus 239 -----------~~~~-----~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~ 279 (283)
T PHA02988 239 -----------NSLK-----LPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLY 279 (283)
T ss_pred -----------CCCC-----CCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence 0011 1124566778999999999999999999998888753
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.45 E-value=9.5e-12 Score=145.96 Aligned_cols=274 Identities=16% Similarity=0.134 Sum_probs=187.7
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccc----cccccCCCCee
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI----PKQELDNKSLV 168 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~----~~~~~~~~~I~ 168 (1081)
++.+.+|++.... .+...-+....|.+++|+|....++++|..++.+ +||...+..... .....|..++.
T Consensus 221 ~~~~~vW~~~~p~-----~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-----TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT 295 (555)
T ss_pred CceEEEEecCCCC-----CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence 4578999998773 2334444577899999999999899999988877 599987654211 12346778999
Q ss_pred EEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeE-EEEE-----e-----cccccceEEEEEeeeCCCCCEEEEEeCCC
Q 001416 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRY-----T-----GGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~-~~~~-----~-----~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg 237 (1081)
.+.|.. ++.+.-++++|.||.|..|+++.-.. .... . ..-...+++++ | .+.+...|+.|+.+|
T Consensus 296 ~vvW~~---~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~-F-~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 296 AVVWLQ---NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK-F-EPTDPNHFIVGTEEG 370 (555)
T ss_pred EEEEec---cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe-e-ccCCCceEEEEcCCc
Confidence 999976 34446699999999999999864322 1111 0 01234577777 2 566777899999999
Q ss_pred cEEEEEcCCCCcc--cccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECC-CCceeeEecCCCccccCC
Q 001416 238 LLILWSADHGQDS--RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACHS 314 (1081)
Q Consensus 238 ~V~vWd~~~~~~~--~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~-t~~~~~~~~~~~~~~~h~ 314 (1081)
.|.-=+-...+.. ..+++...+..|.++|+++.++|. ....+.+++ |.+|+||... ...++.. ...+.
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~g-DW~vriWs~~~~~~Pl~~------~~~~~ 441 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVG-DWTVRIWSEDVIASPLLS------LDSSP 441 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCC--ccceeeeec-cceeEeccccCCCCcchh------hhhcc
Confidence 9876332222111 111233356678899999999993 445555555 9999999987 4444433 36677
Q ss_pred CCeEEEeecCCCCEE--EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEEC
Q 001416 315 VASWCHPRAPNLDIL--TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1081)
Q Consensus 315 ~~v~~v~~spd~~ll--s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~ 390 (1081)
..+++++|||...-+ ++..|| .|||+..... .|+.+...+ ....+.+.|++. +.++++|..
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~-~~~l~~~~~s~~-g~~lavGd~ 506 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVC-SPALTRVRWSPN-GKLLAVGDA 506 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCccccccc-ccccceeecCCC-CcEEEEecC
Confidence 779999999988833 444566 4899986432 333334333 336778888887 677899999
Q ss_pred CCeEEEEeCCCC
Q 001416 391 VGVIISEFDPRS 402 (1081)
Q Consensus 391 dG~Il~iwd~~~ 402 (1081)
.|.+ ++|++..
T Consensus 507 ~G~~-~~~~l~~ 517 (555)
T KOG1587|consen 507 NGTT-HILKLSE 517 (555)
T ss_pred CCcE-EEEEcCc
Confidence 9996 8998653
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.44 E-value=5.6e-12 Score=135.30 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=132.7
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCc-------ccccccccCCCCeeEEEEeeccccCCCCEEEEEECCC
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-------RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~-------~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg 191 (1081)
..+|.++.|.++....+++|+.|.-+ +|-++.... .-...+..|...|+++.| +|+|..+++|+++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-----~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-----SPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-----cCCcCeeeecCCCc
Confidence 55788889988877567766666555 597654332 123345678999999999 78999999999999
Q ss_pred eEEEEEcC--------C--------CeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccccccc
Q 001416 192 VIRVLSMI--------S--------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1081)
Q Consensus 192 ~I~lwd~~--------~--------~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~ 255 (1081)
.|.+|-.. + +...+.+. +|...|..++| +|++.++++++.|+++++||+..|+...
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~W---s~d~~~l~s~s~dns~~l~Dv~~G~l~~---- 159 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAW---SPDSNFLVSGSVDNSVRLWDVHAGQLLA---- 159 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhc---cCCCceeeeeeccceEEEEEeccceeEe----
Confidence 99999765 2 33444554 89999999998 7999999999999999999999998554
Q ss_pred ceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeE
Q 001416 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1081)
Q Consensus 256 ~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~ 303 (1081)
.+.+|...|..++|.| -..++++-+.|+..+.+++...+.++.
T Consensus 160 --~~~dh~~yvqgvawDp---l~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 160 --ILDDHEHYVQGVAWDP---LNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred --eccccccccceeecch---hhhhhhhhccCcccceeeeeeeeeeee
Confidence 3688999999999999 889999999999888888765554443
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.44 E-value=1.4e-13 Score=158.04 Aligned_cols=228 Identities=20% Similarity=0.262 Sum_probs=157.9
Q ss_pred cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeC
Q 001416 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1081)
Q Consensus 156 ~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~ 235 (1081)
.+..+.+|...|+|+.| ...|.++++|++|..++||...+..++.... ||.+.++.++ .+.+..+++++|.
T Consensus 182 ~ikrLlgH~naVyca~f-----Drtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdla---vs~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIF-----DRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLA---VSSNNTMIAAASN 252 (1113)
T ss_pred HHHHHHhhhhheeeeee-----ccccceEeecCccceeeeeeccchhhhccCC-CCccccchhc---cchhhhhhhhccc
Confidence 34456789999999999 7899999999999999999999999999997 9999999998 5888889999999
Q ss_pred CCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCC
Q 001416 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1081)
Q Consensus 236 Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~ 315 (1081)
|..|++|.+..+..+ ..+.+|++.|++++|+| - .+.+.||++++||.+ ..+........... ...
T Consensus 253 D~vIrvWrl~~~~pv------svLrghtgavtaiafsP---~----~sss~dgt~~~wd~r-~~~~~y~prp~~~~-~~~ 317 (1113)
T KOG0644|consen 253 DKVIRVWRLPDGAPV------SVLRGHTGAVTAIAFSP---R----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFT-EKD 317 (1113)
T ss_pred CceEEEEecCCCchH------HHHhccccceeeeccCc---c----ccCCCCCceEecccc-ccccccCCCCCCcc-ccc
Confidence 999999999998744 45799999999999999 2 278899999999987 22111110000111 112
Q ss_pred CeEEEeecCCCC-EEEEECCc--eEEEeccCCccccc----------------------ccccccCCCCCCeEEccCCCc
Q 001416 316 ASWCHPRAPNLD-ILTCVKDS--HIWAIEHPTYSALT----------------------RPLCELSSLVPPQVLAHHKKL 370 (1081)
Q Consensus 316 ~v~~v~~spd~~-lls~s~D~--~IWdi~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~ 370 (1081)
.+.++.|...+. .++++.|+ +.|.+....++... ...+.+..+.....+.+|..
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd- 396 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD- 396 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-
Confidence 233344433333 33444443 12221111110000 00011111222344566777
Q ss_pred cEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 371 RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 371 ~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
.+..+.+||-++.+..+++.||.+ .|||+-+..++...
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst-~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGST-IIWDIWEGIPIKHY 434 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCce-EeeecccCCcceee
Confidence 899999999988888899999997 79999886665443
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=2.8e-12 Score=136.77 Aligned_cols=217 Identities=12% Similarity=0.165 Sum_probs=156.4
Q ss_pred eeCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 6 AFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~-g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
.+.||+++|..++|+|- ...||||++|.+|.||++..+.+...+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 47899999999999995 4599999999999999997654333222
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~ 163 (1081)
.+ ...+.+| ...|..++|+|...+++++++.|..+ +||..|++ .+..+. |
T Consensus 122 ep-------------------------vv~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-h 172 (472)
T KOG0303|consen 122 EP-------------------------VVELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-H 172 (472)
T ss_pred cc-------------------------eEEEeec-ceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-C
Confidence 11 2234445 55678899999887777766666555 69999975 333344 9
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEe---CCCcEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG---SDGLLI 240 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs---~Dg~V~ 240 (1081)
.+.|.++.| +.+|.++++.+.|..|||||.++++.+..-. +|.+.=..-+ .+-.++..+.||- .++.+-
T Consensus 173 pd~i~S~sf-----n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Ra--ifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 173 PDMVYSMSF-----NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARA--IFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred CCeEEEEEe-----ccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCccee--EEeccCceeeecccccccccee
Confidence 999999999 7899999999999999999999999998874 7766543333 1456777665553 478899
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEE-EEECCCeEEEEECCCCce
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFKE 300 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lv-sgs~Dg~V~iWDl~t~~~ 300 (1081)
+||..+-+.-. ...++. .+++|.---|.| +..++. .|-.|+.|+.|.+..-.+
T Consensus 245 Lwdp~nl~eP~---~~~elD-tSnGvl~PFyD~---dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 245 LWDPNNLEEPI---ALQELD-TSNGVLLPFYDP---DTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccCcccccCcc---eeEEec-cCCceEEeeecC---CCCEEEEEecCCcceEEEEecCCCc
Confidence 99987644211 112233 345676666777 555555 455799999999876553
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.43 E-value=9.4e-12 Score=146.01 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=171.2
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE-----EEEEecCCccceEEe----ccCCCeEEEeecCCCCCcee
Q 001416 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQV-----IYELKAGGVDQRRLV----GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 11 ~~~V~~lafsp~g~-~Lasgs~dg~I~IWd~~t~~~-----i~~~~~~~~~~v~~v----s~~~~~lasg~~d~~~~~~~ 80 (1081)
...|+|+.|+|..+ +|+.|.++|.|.+||+..+.. +......|...+..+ ++...-+++++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s--------- 312 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS--------- 312 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe---------
Confidence 46799999999765 888889999999999987654 122222333333222 22223333332
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCcccccc--cccc-----ccCCCCCeeecccCCCCCeEEEEEecCcEEEE-EecCC
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAE--APTA-----VSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTM 152 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~--~~~~-----~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~w-d~~t~ 152 (1081)
.||.|..|++..-...... .... ..+....+++++|.+.....++.|++.+.+.- +....
T Consensus 313 ------------sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 313 ------------SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ------------cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 4999999987654321111 0011 11224478899999988888899998887743 32222
Q ss_pred Cccc------ccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC-CCeEEEEEecccccceEEEEEeeeCC
Q 001416 153 RGRD------IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASS 225 (1081)
Q Consensus 153 ~~~~------~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~-~~~~~~~~~~~h~~~V~~l~w~~~s~ 225 (1081)
+... ......|.++|+++.++ |-+..++..+.|-+++||.-. ...++..+. .+...|++++| .+-
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~n-----PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaW--Spt 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRN-----PFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAW--SPT 452 (555)
T ss_pred cccccccccccccccccCcceEeeecC-----CCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEE--cCc
Confidence 2111 33456778999999995 445444444449999999987 556666665 78888999999 355
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCC
Q 001416 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1081)
Q Consensus 226 d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t 297 (1081)
....|+++..||.+.+||+...... |..+.+-+....+.+.|++ .+..|+.|...|++.+|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~----Pv~s~~~~~~~l~~~~~s~---~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEE----PVLSQKVCSPALTRVRWSP---NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccC----CcccccccccccceeecCC---CCcEEEEecCCCcEEEEEcCc
Confidence 5668999999999999999876532 3334444455667778887 899999999999999999853
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.43 E-value=2.9e-12 Score=130.08 Aligned_cols=248 Identities=18% Similarity=0.209 Sum_probs=172.1
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccc-cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~-~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd 197 (1081)
.+.|+++.|..+++ +.+|...+++ +|++++.+ ....+. .+...|+.+.-. |+ ..+.+-+.|+.+.+|+
T Consensus 14 ~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r--~~~~~r~~g~~~it~lq~~-----p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 14 SSSVTSVLFQANER--LMSGLSVGIVKMWVLQTER--DLPLIRLFGRLFITNLQSI-----PN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred cchheehhhccchh--hhcccccceEEEEEeecCc--cchhhhhhccceeeceeec-----CC-cchhhcCCCceEEEEE
Confidence 66789999988875 5555555555 69999975 444455 567788888874 33 5678888999999999
Q ss_pred cCCCeEE--EEE--------------------------------------------------ecccccceEEEEEeeeCC
Q 001416 198 MISWKLV--RRY--------------------------------------------------TGGHKGSISCLMTFMASS 225 (1081)
Q Consensus 198 ~~~~~~~--~~~--------------------------------------------------~~~h~~~V~~l~w~~~s~ 225 (1081)
+.-+..+ +.+ ..+..+.++|..|-+-..
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 8542111 000 012235677777521122
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCccccc----ccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCcee
Q 001416 226 GEALLVSGGSDGLLILWSADHGQDSREL----VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1081)
Q Consensus 226 d~~~l~sgs~Dg~V~vWd~~~~~~~~~~----~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~ 301 (1081)
..-++++|-++|.|.+||+..+..+-.+ +.......|..+|.++.|.+ ....=++|+.+..+..|.++....-
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas---~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS---SCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech---hhcCCcCCCccccceeeeeccccCc
Confidence 2336778889999999999987433222 12233467999999999998 5555678888888999988643111
Q ss_pred eEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEe
Q 001416 302 RRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1081)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~s 378 (1081)
-.+. ..+......|..+..-||++++ ++|.|+ |||..++ ..|+..+..|.. .|++++|+
T Consensus 241 lq~~--~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt---------------l~pLAVLkyHsa-gvn~vAfs 302 (323)
T KOG0322|consen 241 LQIR--KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT---------------LNPLAVLKYHSA-GVNAVAFS 302 (323)
T ss_pred cccc--ceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc---------------CCchhhhhhhhc-ceeEEEeC
Confidence 1110 1122233467788899999988 688896 6888886 566678888887 99999999
Q ss_pred CCCCeEEEEEECCCeEEEEeCC
Q 001416 379 SLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 379 p~~~~llatgs~dG~Il~iwd~ 400 (1081)
|+ ..++|+++.|+.| .+|++
T Consensus 303 pd-~~lmAaaskD~rI-SLWkL 322 (323)
T KOG0322|consen 303 PD-CELMAAASKDARI-SLWKL 322 (323)
T ss_pred CC-CchhhhccCCceE-Eeeec
Confidence 98 7888999999997 99973
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.9e-11 Score=126.87 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=139.4
Q ss_pred CCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
....++.++|| +.-..++++..|-.|++||-++ ++...++...+..|+|++|- +-.+..|+.|+.. -|.+|
T Consensus 97 s~~dlr~~aWh-----qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawR--PlsaselavgCr~-gIciW 167 (445)
T KOG2139|consen 97 SEIDLRGVAWH-----QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWR--PLSASELAVGCRA-GICIW 167 (445)
T ss_pred hhcceeeEeec-----hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEec--cCCcceeeeeecc-eeEEE
Confidence 34567889995 4445688999999999999776 66666665678899999983 5566677777755 57899
Q ss_pred EcCCCCcccc--------cccceeecccCCcEEEEEEeeecCCCCEEEEEEC-CCeEEEEECCCCceeeEecCCCccccC
Q 001416 243 SADHGQDSRE--------LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSFKELRRIKPVPKLACH 313 (1081)
Q Consensus 243 d~~~~~~~~~--------~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~-Dg~V~iWDl~t~~~~~~~~~~~~~~~h 313 (1081)
..+....... ........+| .+|+++.|++ |+..+++++. |..|+|||..++..+.-. ..-
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~------~~g 237 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLI------PKG 237 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCccccc------ccC
Confidence 8764322111 0122333556 7899999999 8999999985 789999999998765321 233
Q ss_pred CCCeEEEeecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEEC
Q 001416 314 SVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1081)
Q Consensus 314 ~~~v~~v~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~ 390 (1081)
.+.+.-+.||||+.++ +++-|. ++|..+. .+..+. +.--.+ +|...+|+|.|..++++.+.
T Consensus 238 lgg~slLkwSPdgd~lfaAt~davfrlw~e~q-~wt~er--------------w~lgsg-rvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 238 LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ-SWTKER--------------WILGSG-RVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred CCceeeEEEcCCCCEEEEecccceeeeehhcc-cceecc--------------eeccCC-ceeeeeecCCCCEEEEEEcC
Confidence 4567789999999966 777775 7996553 221111 111223 89999999999999888877
Q ss_pred CCeE
Q 001416 391 VGVI 394 (1081)
Q Consensus 391 dG~I 394 (1081)
+-.+
T Consensus 302 sp~l 305 (445)
T KOG2139|consen 302 SPRL 305 (445)
T ss_pred CceE
Confidence 7774
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.39 E-value=2.2e-12 Score=140.15 Aligned_cols=272 Identities=17% Similarity=0.242 Sum_probs=199.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEE
Q 001416 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1081)
Q Consensus 13 ~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f 92 (1081)
.-..+.++.+|+.|+.|+.-|.|--+|+.++++..++..-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------------------------------------- 170 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------------------------------------- 170 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh----------------------------------------
Confidence 4567889999999999999999999999998888877632
Q ss_pred eCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEE
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~ 172 (1081)
..|..+.|-.+.+ +++++-...+++||-...+..++. ....|..+.|
T Consensus 171 ----------------------------Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~GtElHClk----~~~~v~rLeF 217 (545)
T KOG1272|consen 171 ----------------------------ETVRDVTFLHNEQ-FFAVAQKKYVYVYDNNGTELHCLK----RHIRVARLEF 217 (545)
T ss_pred ----------------------------hhhhhhhhhcchH-HHHhhhhceEEEecCCCcEEeehh----hcCchhhhcc
Confidence 1234555555544 888888888889987654433332 2357888999
Q ss_pred eeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 001416 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1081)
Q Consensus 173 ~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~ 252 (1081)
+| ..-+|++++..|.++--|+.+|+.+..+. .-.+.+..++ .+|-+..+-+|...|+|.+|......
T Consensus 218 LP-----yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~---qNP~NaVih~GhsnGtVSlWSP~ske---- 284 (545)
T KOG1272|consen 218 LP-----YHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMK---QNPYNAVIHLGHSNGTVSLWSPNSKE---- 284 (545)
T ss_pred cc-----hhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhh---cCCccceEEEcCCCceEEecCCCCcc----
Confidence 75 45589999999999999999999998886 5667777776 47777789999999999999998877
Q ss_pred cccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEE
Q 001416 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1081)
Q Consensus 253 ~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s 332 (1081)
|...+..|.++|.++++.+ +|.|++|++.|+.|+|||+++...+.++. . ..+...+++|..|-+..+-
T Consensus 285 --PLvKiLcH~g~V~siAv~~---~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------t-p~~a~~ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 285 --PLVKILCHRGPVSSIAVDR---GGRYMATTGLDRKVKIWDLRNFYQLHTYR------T-PHPASNLSLSQKGLLALSY 352 (545)
T ss_pred --hHHHHHhcCCCcceEEECC---CCcEEeecccccceeEeeeccccccceee------c-CCCccccccccccceeeec
Confidence 4445678999999999999 99999999999999999999887666541 1 2344467787766554443
Q ss_pred CC-ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 333 KD-SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 333 ~D-~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
++ ..||.=.... .+.. ..|-. -..-.. .|..+.|.|- ..+|.+|...|.-
T Consensus 353 G~~v~iw~d~~~~-s~~~--------~~pYm-~H~~~~-~V~~l~FcP~-EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 353 GDHVQIWKDALKG-SGHG--------ETPYM-NHRCGG-PVEDLRFCPY-EDVLGIGHAGGIT 403 (545)
T ss_pred CCeeeeehhhhcC-CCCC--------Ccchh-hhccCc-ccccceeccH-HHeeeccccCCce
Confidence 44 4788532210 0000 01100 011123 8899999997 6677999888874
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.39 E-value=3.5e-11 Score=125.68 Aligned_cols=220 Identities=12% Similarity=0.101 Sum_probs=160.7
Q ss_pred CCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC---CeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEE
Q 001416 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS---WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 164 ~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~---~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~ 240 (1081)
..+|+|.+| ++++..++++.....|.||.... ++..+++. .|...|++++| .|..+.|++|+.|..-+
T Consensus 10 ~~pitchAw-----n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdW---ap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAW-----NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDW---APKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeee-----cCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEee---cCCCCceeEccCCCCcc
Confidence 478999999 78999999999999999999864 56788887 89999999997 78888999999999999
Q ss_pred EEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 241 vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
+|....+. +++|...+..|++.+++|.|+| ..+.|++||..+.|.||-++.......-+.+ -..+...|.++
T Consensus 81 Vw~~~~~~---~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWWVsKhi--kkPirStv~sl 152 (361)
T KOG1523|consen 81 VWTQPSGG---TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWWVSKHI--KKPIRSTVTSL 152 (361)
T ss_pred ccccCCCC---eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccceehhhhh--CCccccceeee
Confidence 99984432 3567777888999999999999 8999999999999999998765544322111 13456789999
Q ss_pred eecCCCCEE-EEECCc--eEEEeccC--CcccccccccccCC-CCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeE
Q 001416 321 PRAPNLDIL-TCVKDS--HIWAIEHP--TYSALTRPLCELSS-LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1081)
Q Consensus 321 ~~spd~~ll-s~s~D~--~IWdi~~~--~~~~~~~~~~~~~~-~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~I 394 (1081)
.|||++-++ +||.|+ ||+..--. +.++...+.....+ +..+..+..... .|..+.|+|+ ++.|+-.+.|+.+
T Consensus 153 dWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg-wvh~v~fs~s-G~~lawv~Hds~v 230 (361)
T KOG1523|consen 153 DWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG-WVHGVLFSPS-GNRLAWVGHDSTV 230 (361)
T ss_pred eccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC-ceeeeEeCCC-CCEeeEecCCCce
Confidence 999999988 577786 55543210 11111111100000 111222333344 9999999998 5566888888886
Q ss_pred EEEeCCCCC
Q 001416 395 ISEFDPRSL 403 (1081)
Q Consensus 395 l~iwd~~~~ 403 (1081)
.+=|....
T Consensus 231 -~~~da~~p 238 (361)
T KOG1523|consen 231 -SFVDAAGP 238 (361)
T ss_pred -EEeecCCC
Confidence 66665543
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.36 E-value=6.4e-12 Score=140.28 Aligned_cols=228 Identities=13% Similarity=0.067 Sum_probs=153.8
Q ss_pred cCcEEEEEecCCC-cc-cccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-------eEEEEEeccc
Q 001416 141 VNKAIFLDLVTMR-GR-DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGH 211 (1081)
Q Consensus 141 ~d~~i~wd~~t~~-~~-~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-------~~~~~~~~~h 211 (1081)
.+.+-+|+++... .. .+.-....+..|+.+.|.| -|...|+++++||.|++|.+..+ ..-..+. +|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdP----FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h 676 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDP----FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IH 676 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCC----CChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cc
Confidence 4444478876532 11 1112234567899999976 36778999999999999999643 3334555 89
Q ss_pred ccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEE
Q 001416 212 KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLA 291 (1081)
Q Consensus 212 ~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~ 291 (1081)
...|+++.|+ +--.+.|++++.|-+|++||+.+.+.. ..+.+|++.|.+++|+| +|+.+++.+.||+|+
T Consensus 677 ~eKI~slRfH--PLAadvLa~asyd~Ti~lWDl~~~~~~------~~l~gHtdqIf~~AWSp---dGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 677 GEKITSLRFH--PLAADVLAVASYDSTIELWDLANAKLY------SRLVGHTDQIFGIAWSP---DGRRIATVCKDGTLR 745 (1012)
T ss_pred cceEEEEEec--chhhhHhhhhhccceeeeeehhhhhhh------heeccCcCceeEEEECC---CCcceeeeecCceEE
Confidence 9999999964 555678999999999999999998743 35799999999999999 999999999999999
Q ss_pred EEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc------eEEEeccCCcccccccccccCCCCCCeEE
Q 001416 292 IWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS------HIWAIEHPTYSALTRPLCELSSLVPPQVL 364 (1081)
Q Consensus 292 iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~------~IWdi~~~~~~~~~~~~~~~~~~~~~~~l 364 (1081)
+|+-+++..- +.......+ ..--.+.|.-||+++ ..|.|. .+|+......+... +.
T Consensus 746 Vy~Prs~e~p--v~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~-------------t~ 808 (1012)
T KOG1445|consen 746 VYEPRSREQP--VYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY-------------TQ 808 (1012)
T ss_pred EeCCCCCCCc--cccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce-------------ee
Confidence 9999876531 111111122 122267788889966 455552 36776643222111 11
Q ss_pred ccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 365 AHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 365 ~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
.-.....+.--.+.+|.+.++.+|-.|..| ..|.+-.
T Consensus 809 ~lDvaps~LvP~YD~Ds~~lfltGKGD~~v-~~yEv~~ 845 (1012)
T KOG1445|consen 809 VLDVAPSPLVPHYDYDSNVLFLTGKGDRFV-NMYEVIY 845 (1012)
T ss_pred eecccCccccccccCCCceEEEecCCCceE-EEEEecC
Confidence 111110111113456667788999999996 8887654
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.3e-11 Score=136.33 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=158.8
Q ss_pred ccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCc
Q 001416 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1081)
Q Consensus 159 ~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~ 238 (1081)
.+.+|.+.|+|++| +.+|.+|++||+|-.+.|||.-..+.++.+..||...|.+++ |....+..+++||+.|..
T Consensus 45 eL~GH~GCVN~LeW-----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvK-FvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEW-----NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVK-FVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhccccceecceee-----cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEe-eeccCCCeEEEeccCcce
Confidence 46899999999999 789999999999999999999988999999889999999999 323445678999999999
Q ss_pred EEEEEcCCCCcc----cccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceee-Ee---cCCCcc
Q 001416 239 LILWSADHGQDS----RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR-RI---KPVPKL 310 (1081)
Q Consensus 239 V~vWd~~~~~~~----~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~-~~---~~~~~~ 310 (1081)
|+++|+...+.- .-..+...+..|...|..++-.| +..+.+.+++.||+|+-+|++....-. .. ......
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 999999853211 00113344678999999999998 244889999999999999997522100 00 000001
Q ss_pred ccCCCCeEEEeecCCCC-EE-EEECCc--eEEEeccCCcccc-cc--cccccCCCCCCeEE--------ccCCCc---cE
Q 001416 311 ACHSVASWCHPRAPNLD-IL-TCVKDS--HIWAIEHPTYSAL-TR--PLCELSSLVPPQVL--------AHHKKL---RV 372 (1081)
Q Consensus 311 ~~h~~~v~~v~~spd~~-ll-s~s~D~--~IWdi~~~~~~~~-~~--~~~~~~~~~~~~~l--------~~~~~~---~V 372 (1081)
...--...|+..+|... ++ .|+.|. ++||.+....... .. ..+......++.-+ .+.... .+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 11123566899999877 45 566664 8999653211000 00 00100001111111 111111 24
Q ss_pred EEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCccc
Q 001416 373 YCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1081)
Q Consensus 373 ~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~ 409 (1081)
+-++|+|+|..+|+.-+.+-+ +++|+...+...+.
T Consensus 277 t~vtfnpNGtElLvs~~gEhV--Ylfdvn~~~~~~~y 311 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHV--YLFDVNEDKSPTPY 311 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEE--EEEeecCCCCceee
Confidence 567899997777666555544 78998876555443
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.35 E-value=6.8e-11 Score=123.53 Aligned_cols=252 Identities=13% Similarity=0.083 Sum_probs=171.7
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEEEEEecCCC-cccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEc
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~-~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~ 198 (1081)
..+|++.+|++|+..+.++.....+.+|.....+ ......+..|...|++|+| +|..+.|++|+.|..-++|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW-----ap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW-----APKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee-----cCCCCceeEccCCCCcccccc
Confidence 4568999999999855555555566677666554 3456667889999999999 678999999999999999998
Q ss_pred C---CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeec
Q 001416 199 I---SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1081)
Q Consensus 199 ~---~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 275 (1081)
. ++++...+. .|+..++++.| +|.++.|++||.-+.|.||-++..+.-. ..+..-+.+.+.|++++|+|
T Consensus 85 ~~~~~WkptlvLl-RiNrAAt~V~W---sP~enkFAVgSgar~isVcy~E~ENdWW--VsKhikkPirStv~sldWhp-- 156 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL-RINRAATCVKW---SPKENKFAVGSGARLISVCYYEQENDWW--VSKHIKKPIRSTVTSLDWHP-- 156 (361)
T ss_pred CCCCeeccceeEE-EeccceeeEee---cCcCceEEeccCccEEEEEEEeccccee--hhhhhCCccccceeeeeccC--
Confidence 3 345555665 79999999997 8999999999999999999987755321 22333356778899999999
Q ss_pred CCCCEEEEEECCCeEEEEECC-----CCc---eeeEecCC----CccccCCCCeEEEeecCCCCEEE-EECCceEEEecc
Q 001416 276 GGSPQLITIGADKTLAIWDTV-----SFK---ELRRIKPV----PKLACHSVASWCHPRAPNLDILT-CVKDSHIWAIEH 342 (1081)
Q Consensus 276 ~~~~~Lvsgs~Dg~V~iWDl~-----t~~---~~~~~~~~----~~~~~h~~~v~~v~~spd~~lls-~s~D~~IWdi~~ 342 (1081)
++-+|+.||.|+.++|+..- ... +.-.-.+. .......+.+..+.|+|+|..|+ .+.|..+.-.+.
T Consensus 157 -nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 157 -NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred -CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 88999999999999999742 100 00000000 01123456889999999999774 677775544432
Q ss_pred CCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeC
Q 001416 343 PTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1081)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd 399 (1081)
...+. .+.+..... .+..++.|-.+ ..++++|.+-+-++...|
T Consensus 236 ~~p~~------------~v~~~~~~~-lP~ls~~~ise-~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 236 AGPSE------------RVQSVATAQ-LPLLSVSWISE-NSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred CCCch------------hccchhhcc-CCceeeEeecC-CceeecCCCCCceEEEec
Confidence 11100 011111112 25666666654 555555555466555544
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=2e-10 Score=120.02 Aligned_cols=312 Identities=16% Similarity=0.160 Sum_probs=191.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeCC
Q 001416 16 KIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDD 95 (1081)
Q Consensus 16 ~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg 95 (1081)
-..|||+|+++|+++.. .+.|-|.+|-+.+.-|.. .+.+..+ .+....-.+.++.+.|+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yi------------------eW~ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYI------------------EWKADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhhe------------------eeeccceeeeeeeeccc
Confidence 36799999999999877 778888877554332221 1111111 01111234556666899
Q ss_pred eEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEee
Q 001416 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1081)
Q Consensus 96 ~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p 174 (1081)
.|.+|++...+- ..........+.+++|||||+.++.+..-+--+ +|.+.+.+.-.+ ......+..++|
T Consensus 72 ~vqvwsl~Qpew-----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f-- 141 (447)
T KOG4497|consen 72 KVQVWSLVQPEW-----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAF-- 141 (447)
T ss_pred eEEEEEeeccee-----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEE--
Confidence 999999987762 233333366789999999999888887766555 799988653322 233345577888
Q ss_pred ccccCCCCEEEEEEC------------------------------------CCeEEEEEcCCCeEEEEEecccccceEEE
Q 001416 175 RSAVGDVPLVAFGSS------------------------------------DGVIRVLSMISWKLVRRYTGGHKGSISCL 218 (1081)
Q Consensus 175 ~~~sp~~~~l~sgs~------------------------------------Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l 218 (1081)
+|+|++.+..+. +..+.+||---.-.+..+ ...-.+..+
T Consensus 142 ---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v 216 (447)
T KOG4497|consen 142 ---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFV 216 (447)
T ss_pred ---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEE
Confidence 678888777664 233445553211111111 122456777
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcc------------------------------------------------
Q 001416 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDS------------------------------------------------ 250 (1081)
Q Consensus 219 ~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~------------------------------------------------ 250 (1081)
.| +|.+++|+.|+.|+.+|+.+--+.+..
T Consensus 217 ~w---sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se 293 (447)
T KOG4497|consen 217 EW---SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE 293 (447)
T ss_pred Ee---ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence 75 899999999999999998654211100
Q ss_pred ------------cccccceeecccCCcEEEEEEeeecCCCCEEEEEEC--CCeEEEEECCCCceeeEecCCCccccCCCC
Q 001416 251 ------------RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA--DKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1081)
Q Consensus 251 ------------~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~--Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~ 316 (1081)
...+|........-++--++|++ |..+++|-.+ -+.+-+||++..+....+ ....+
T Consensus 294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~---Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-------iQk~p 363 (447)
T KOG4497|consen 294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC---DSTYAATRNDKYPNALWLWDLQNLKLHAVL-------IQKHP 363 (447)
T ss_pred hhhhhhhcceeeecccCCCCCCCcccccceeeecC---CceEEeeecCCCCceEEEEechhhhhhhhh-------hhccc
Confidence 00001111111234567789998 8888888764 367999999876643332 34457
Q ss_pred eEEEeecCCCC-EEEEECCceE--EEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCe
Q 001416 317 SWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1081)
Q Consensus 317 v~~v~~spd~~-lls~s~D~~I--Wdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~ 393 (1081)
|....|+|... ++.+.+..|+ |...-. ...-.+..+-.|..+.|+-.|..+ +..+.|..
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~psg~-----------------~~V~vP~~GF~i~~l~W~~~g~~i-~l~~kDaf 425 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-----------------RVVGVPKKGFNIQKLQWLQPGEFI-VLCGKDAF 425 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCCCc-----------------eEEecCCCCceeeeEEecCCCcEE-EEEcCCce
Confidence 88999999887 4456666664 544310 011111223488999999986665 55555554
Q ss_pred E
Q 001416 394 I 394 (1081)
Q Consensus 394 I 394 (1081)
.
T Consensus 426 c 426 (447)
T KOG4497|consen 426 C 426 (447)
T ss_pred E
Confidence 3
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.1e-11 Score=134.19 Aligned_cols=198 Identities=21% Similarity=0.226 Sum_probs=140.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeC
Q 001416 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYD 94 (1081)
Q Consensus 15 ~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~D 94 (1081)
.+++|+++|..|++|+.||++|||++.+...+.....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~------------------------------------------ 185 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH------------------------------------------ 185 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh------------------------------------------
Confidence 78889999899999999999999998765444433322
Q ss_pred CeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEee
Q 001416 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1081)
Q Consensus 95 g~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p 174 (1081)
...|.++.|+|||+ ++++-+.+...+|+.+++...........+.....+.|
T Consensus 186 -------------------------~~eV~DL~FS~dgk-~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF-- 237 (398)
T KOG0771|consen 186 -------------------------HAEVKDLDFSPDGK-FLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRF-- 237 (398)
T ss_pred -------------------------cCccccceeCCCCc-EEEEecCCceEEEEeccCchhhhcCCcccchhhhhcee--
Confidence 34578899999998 66666666888899998743222222233345566777
Q ss_pred ccccCCC---CE--EEEEECCCeEEEEEcCCCeE-----EEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 175 RSAVGDV---PL--VAFGSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 175 ~~~sp~~---~~--l~sgs~Dg~I~lwd~~~~~~-----~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
+.++ .+ ++.-...+.|+.||+..++. .++.. .-...|.+++ .+.+|++++.|+.||.|-|++.
T Consensus 238 ---~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~---VS~dGkf~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 238 ---SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLA---VSDDGKFLALGTMDGSVAIYDA 310 (398)
T ss_pred ---cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEE---EcCCCcEEEEeccCCcEEEEEe
Confidence 3344 22 23333556777777654322 11111 2335788998 6999999999999999999999
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCC
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t 297 (1081)
.+-+..+- .-+.|..-|+.+.|+| +.+++++.+.|.+..|..+.-
T Consensus 311 ~~lq~~~~-----vk~aH~~~VT~ltF~P---dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 311 KSLQRLQY-----VKEAHLGFVTGLTFSP---DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ceeeeeEe-----ehhhheeeeeeEEEcC---CcCcccccccCCceeEEEEee
Confidence 87664432 3478999999999999 999999999999998887643
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=6.7e-10 Score=126.81 Aligned_cols=251 Identities=10% Similarity=0.080 Sum_probs=155.2
Q ss_pred CCCceEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCcE--EEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCC
Q 001416 10 TNDKIVKIQLHPTHPWLVTAD-ASDHVSVWNWE-HRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1081)
Q Consensus 10 H~~~V~~lafsp~g~~Lasgs-~dg~I~IWd~~-t~~~--i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~ 85 (1081)
+.+....++++|++++|+.++ .++.|.+|++. +++. +..............+|+++.+.++.
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-------------- 98 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-------------- 98 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE--------------
Confidence 446688899999999887664 57899999996 3432 23333221111122278887777653
Q ss_pred ceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCC-cccc--c-cc
Q 001416 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-GRDI--P-KQ 160 (1081)
Q Consensus 86 ~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~-~~~~--~-~~ 160 (1081)
+.++.|.+|++.+............+ .....+++++|+++.++++...+..+ +||+.+.. .... . ..
T Consensus 99 ------~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 99 ------YNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred ------cCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 24789999998743221111111111 22356788999999777777665544 69997632 1100 0 01
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEEEC-CCeEEEEEcCC--C--eEEEEEec--c---cccceEEEEEeeeCCCCCEE
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS--W--KLVRRYTG--G---HKGSISCLMTFMASSGEALL 230 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sgs~-Dg~I~lwd~~~--~--~~~~~~~~--~---h~~~V~~l~w~~~s~d~~~l 230 (1081)
......++.++| +|+++++++++. +++|.+||+.. + +.+..+.. . +......+. ++|+++++
T Consensus 171 ~~~g~~p~~~~~-----~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~---~~pdg~~l 242 (330)
T PRK11028 171 TVEGAGPRHMVF-----HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH---ITPDGRHL 242 (330)
T ss_pred cCCCCCCceEEE-----CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE---ECCCCCEE
Confidence 122455788999 789999988876 89999999973 3 33333320 1 111222344 68999998
Q ss_pred EEEeC-CCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEEC-CCeEEEEECC
Q 001416 231 VSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTV 296 (1081)
Q Consensus 231 ~sgs~-Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~-Dg~V~iWDl~ 296 (1081)
+++.. +++|.+|+++......++.. .... ......+.++| ++++|+++.. +++|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~--~~~~-~~~p~~~~~~~---dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEG--HQPT-ETQPRGFNIDH---SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeE--EEec-cccCCceEECC---CCCEEEEEEccCCcEEEEEEc
Confidence 88854 78999999976432211101 1111 12445789999 8888887775 8999999874
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=2.8e-11 Score=126.22 Aligned_cols=347 Identities=13% Similarity=0.143 Sum_probs=202.5
Q ss_pred ecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEE-EECCCeEEEEEcCCCeE
Q 001416 125 SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKL 203 (1081)
Q Consensus 125 sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~s-gs~Dg~I~lwd~~~~~~ 203 (1081)
-.+|||+|+ ++++.++-++++=|.++.+...+.. --+.|.-+.| ..+..++++ ...|+.|.+|++...+-
T Consensus 13 ~c~fSp~g~-yiAs~~~yrlviRd~~tlq~~qlf~---cldki~yieW-----~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGN-YIASLSRYRLVIRDSETLQLHQLFL---CLDKIVYIEW-----KADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCC-eeeeeeeeEEEEeccchhhHHHHHH---HHHHhhheee-----eccceeeeeeeeccceEEEEEeeccee
Confidence 357999998 8899988888877877754332221 1356777888 556666554 45788999999987777
Q ss_pred EEEEecccccceEEEEEeeeCCCCC-EEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEE
Q 001416 204 VRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI 282 (1081)
Q Consensus 204 ~~~~~~~h~~~V~~l~w~~~s~d~~-~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lv 282 (1081)
...+. ....++.+++| +|+|+ .|.+..-|-.|.+|.+.+.+... ++-.+..+..++|+| ++++.+
T Consensus 84 ~ckId-eg~agls~~~W---SPdgrhiL~tseF~lriTVWSL~t~~~~~-------~~~pK~~~kg~~f~~---dg~f~a 149 (447)
T KOG4497|consen 84 YCKID-EGQAGLSSISW---SPDGRHILLTSEFDLRITVWSLNTQKGYL-------LPHPKTNVKGYAFHP---DGQFCA 149 (447)
T ss_pred EEEec-cCCCcceeeeE---CCCcceEeeeecceeEEEEEEeccceeEE-------ecccccCceeEEECC---CCceee
Confidence 77776 56778888987 89985 55566679999999998876432 222234568899999 999988
Q ss_pred EEECCCeEEEEECC---CCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCceEEEeccCCcccccccccccCCCC
Q 001416 283 TIGADKTLAIWDTV---SFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLV 359 (1081)
Q Consensus 283 sgs~Dg~V~iWDl~---t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~~IWdi~~~~~~~~~~~~~~~~~~~ 359 (1081)
..+.-......++. ....++.+ ...+...+.+.|+|||..|+. ||.-- ++
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f------~~dT~DltgieWsPdg~~laV------wd~~L-ey-------------- 202 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEF------KLDTIDLTGIEWSPDGNWLAV------WDNVL-EY-------------- 202 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhc------CCCcccccCceECCCCcEEEE------ecchh-hh--------------
Confidence 87753221112222 22222222 233345567899999998864 66432 11
Q ss_pred CCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCCCCcccCCCCCCCCc--eEEEE-----ecCcEEEEE
Q 001416 360 PPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDH--SAVYI-----VERELKLVN 432 (1081)
Q Consensus 360 ~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~l~l~~ 432 (1081)
..+..+.+..+..++|+|. ++++++|+.|+.+ ++.+--+-+++..+.....-... .+++- ....+.-..
T Consensus 203 --kv~aYe~~lG~k~v~wsP~-~qflavGsyD~~l-rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 203 --KVYAYERGLGLKFVEWSPC-NQFLAVGSYDQML-RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred --eeeeeeeccceeEEEeccc-cceEEeeccchhh-hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1122344347888999997 7788999999995 88765544444443322211110 01111 001111111
Q ss_pred EeecCCCCCCCCCCcccCCCCCcCCCchhHH---hhhhcccccccccCCCC--CCeEEEccCCCEEEEecCCCCce-EEE
Q 001416 433 FQLSSAANPSLGNNGSLSETGRLKGDLPDAL---QIKQIKKHISTPVPHDS--YSILSVSSSGKYLAVVWPDIPYF-SVY 506 (1081)
Q Consensus 433 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~~~~~~~--~~~l~~S~~G~~lav~~~~~~~~-~i~ 506 (1081)
| .++.++ ..-+......-+. .++-...+-.+..|+|. ...+++|+|..|+|-....-+.. -++
T Consensus 279 f-----~p~~~~------a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 279 F-----TPTDLE------AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLW 347 (447)
T ss_pred c-----CCCccc------cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEE
Confidence 2 111111 0001111111111 11111111112233332 25799999999998873333322 255
Q ss_pred EecCeE----EeecCceeEEEEecCcccceeccc
Q 001416 507 KVSDWS----IVDSGSARLLAWDTCRDRFAILES 536 (1081)
Q Consensus 507 ~~~~~~----~~~~G~~~~~aW~~~~~~~a~l~~ 536 (1081)
++...+ +++.-..+.|.|+|++.+.++.-.
T Consensus 348 dlq~l~l~avLiQk~piraf~WdP~~prL~vctg 381 (447)
T KOG4497|consen 348 DLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG 381 (447)
T ss_pred echhhhhhhhhhhccceeEEEeCCCCceEEEEcC
Confidence 555544 345667899999999999888733
No 214
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=99.33 E-value=3.9e-14 Score=169.83 Aligned_cols=272 Identities=8% Similarity=-0.044 Sum_probs=172.9
Q ss_pred CCCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe----e---------eeEEEEEecCcccccccccccccc
Q 001416 663 EAAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA----Y---------QHYIVISSLCPQYRYLGDVAIPYA 727 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~----~---------~~~~~v~~y~~~~gsl~d~~~~~~ 727 (1081)
.|..+|||.++.+... -..+...|++.+.-.+|.|++.+. . ...++|++||+. |+|.+.+.+..
T Consensus 56 ~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~-gsL~~~l~~~~ 134 (496)
T PTZ00283 56 DGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANA-GDLRQEIKSRA 134 (496)
T ss_pred CCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCC-CcHHHHHHHhh
Confidence 3566899998765432 122234455566667788887754 1 126799999999 99887654311
Q ss_pred c---ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccC
Q 001416 728 T---GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLR 803 (1081)
Q Consensus 728 ~---~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~ 803 (1081)
. .+.......+ +..+..||.|||...+ |+.+|++|++++....+||+|||+.................
T Consensus 135 ~~~~~l~e~~~~~i--------~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~ 206 (496)
T PTZ00283 135 KTNRTFREHEAGLL--------FIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFC 206 (496)
T ss_pred ccCCCCCHHHHHHH--------HHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCeecccccccccccccc
Confidence 0 1111111111 4467889999999998 99999999999999999999999976422111110000001
Q ss_pred CcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeee
Q 001416 804 PPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVK 883 (1081)
Q Consensus 804 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 883 (1081)
. ...|.|||+.... ..+.+.||||+|++++|+++|..||...... +.. . ...
T Consensus 207 G--------t~~Y~aPE~~~~~-----------~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~--~~~------~-~~~ 258 (496)
T PTZ00283 207 G--------TPYYVAPEIWRRK-----------PYSKKADMFSLGVLLYELLTLKRPFDGENME--EVM------H-KTL 258 (496)
T ss_pred C--------CcceeCHHHhCCC-----------CCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHH------H-HHh
Confidence 1 1237888886421 1234579999999999999988887422111 000 0 000
Q ss_pred cCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHH--HHh-----------cC--cHHHH
Q 001416 884 DGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQF--MLG-----------MG--YATEA 948 (1081)
Q Consensus 884 ~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~--l~~-----------~~--~~~yA 948 (1081)
.+ ...+ +...+.....+++..|+..+|..||.+..+... ++. .. .....
T Consensus 259 ~~-----------~~~~-----~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~~~~~~~~~~~~~~~~~~~~ 322 (496)
T PTZ00283 259 AG-----------RYDP-----LPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLFISGLLEIVQTQPGFSGPLR 322 (496)
T ss_pred cC-----------CCCC-----CCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHhhhhHHHHHhhCcccccchh
Confidence 00 0000 111344566789999999999999999887542 110 00 22344
Q ss_pred hccccchHHHHHHHHHhhhhHHHHhhhhcccchhhhcCC
Q 001416 949 LHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQ 987 (1081)
Q Consensus 949 ~~le~lv~ert~~L~~ek~k~~~ll~~~lp~~va~~l~~ 987 (1081)
..++...++.+.++..|+++....+..+++..++.++..
T Consensus 323 ~~i~~~~~~~~~~l~~e~~~~~~~~~e~~~~~~~~~~~~ 361 (496)
T PTZ00283 323 DTISRQIQQTKQLLQVERRRIVRQMEESLSTAASTTILE 361 (496)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 456667788899999999999999999999888887765
No 215
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.31 E-value=2.8e-14 Score=162.42 Aligned_cols=236 Identities=12% Similarity=0.038 Sum_probs=154.2
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----ee-eEEEEEecCccccccccccccccc-ceeeEeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQ-HYIVISSLCPQYRYLGDVAIPYAT-GAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~-~~~~v~~y~~~~gsl~d~~~~~~~-~~~w~~~~ 736 (1081)
|..+|||.++-...+-.++...|+..+.=..|.|+|.++ .. +-++|.||-+. |||+|.|..... .++|..|+
T Consensus 99 ~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~n-GsL~d~L~~~~~~~L~W~~R~ 177 (361)
T KOG1187|consen 99 GTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPN-GSLEDHLHGKKGEPLDWETRL 177 (361)
T ss_pred CCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCC-CCHHHHhCCCCCCCCCHHHHH
Confidence 355899976654433245577788888888999999999 23 48999999999 999999888665 89999998
Q ss_pred eeEeccCceEEEeeeCCccccchhh---h-hhhhhhhhHHhhhhHhhhccceeeeeeccc-chhhhcccccCCcchhhhh
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVET---M-KMKEEMKLKEVQSRAVAEHGELALIAVESS-QTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~---~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~-~~~~~~~~~~~~~~~~~~~ 811 (1081)
.. +.++++|++|||... | |+.+||+|.+.|..|..|++||||..+-.. ++...... ..-.
T Consensus 178 kI--------a~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~---~gt~---- 242 (361)
T KOG1187|consen 178 KI--------ALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTV---MGTF---- 242 (361)
T ss_pred HH--------HHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeec---CCCC----
Confidence 88 889999999999943 5 999999999999999999999999854332 11111000 0000
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEE-eeeecCe-EEE
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVV-VGVKDGV-LWL 889 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~-~~~ 889 (1081)
-..|||.... | .-+.+.||||||++++|+++|..++.... +..+.. ...+. .-+.+++ ..+
T Consensus 243 ---gY~~PEy~~~----------g-~lt~KsDVySFGVvllElitgr~~~d~~~-~~~~~~--l~~w~~~~~~~~~~~ei 305 (361)
T KOG1187|consen 243 ---GYLAPEYAST----------G-KLTEKSDVYSFGVVLLELITGRKAVDQSR-PRGELS--LVEWAKPLLEEGKLREI 305 (361)
T ss_pred ---ccCChhhhcc----------C-CcCcccccccchHHHHHHHhCCcccCCCC-Cccccc--HHHHHHHHHHCcchhhe
Confidence 0234444321 1 12345799999999999999886664222 100000 00000 0011211 223
Q ss_pred EeccccccccCCCCcccce---ecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 890 IDRYMCAHALSLSHPGIRC---RCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 890 ~d~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+|..... -++ .+......+...|-..+|..||...++.+.|+.
T Consensus 306 iD~~l~~---------~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~ 351 (361)
T KOG1187|consen 306 VDPRLKE---------GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEG 351 (361)
T ss_pred eCCCccC---------CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHh
Confidence 4433211 111 223335566667878888999999998777744
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=4.4e-10 Score=119.79 Aligned_cols=243 Identities=14% Similarity=0.165 Sum_probs=160.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCc
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGS 86 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~ 86 (1081)
+....+..+.|+.+...|..|+.||. ++++.+....... ....++.++ -.....+|..+.+
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~---~~~~~~~IvEmLFSSSLvaiV~~~------------- 65 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFS---KDTEGVSIVEMLFSSSLVAIVSIK------------- 65 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhc---ccCCCeEEEEeecccceeEEEecC-------------
Confidence 34566788889999888888988874 5777654332111 111222222 1111122221110
Q ss_pred eEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccc-cccCCC
Q 001416 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPK-QELDNK 165 (1081)
Q Consensus 87 V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~-~~~~~~ 165 (1081)
....+++.++.....+. .-.....|.++.++. + .++++-.+.+++||+++++...... ...+..
T Consensus 66 ------qpr~Lkv~~~Kk~~~IC------e~~fpt~IL~VrmNr--~-RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 66 ------QPRKLKVVHFKKKTTIC------EIFFPTSILAVRMNR--K-RLVVCLEESIYIYDIKDMKLLHTIETTPPNPK 130 (391)
T ss_pred ------CCceEEEEEcccCceEE------EEecCCceEEEEEcc--c-eEEEEEcccEEEEecccceeehhhhccCCCcc
Confidence 12335555554433211 111244577777744 3 4566666678899999986432221 123444
Q ss_pred CeeEEEEeeccccCCCCEEEEEE--CCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCc-EEEE
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGS--SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILW 242 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs--~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~-V~vW 242 (1081)
.+.+++. ++.+.+++.-+ ..|.|.+||..+-+.+..+. .|.+.+-|++ ++++|.+|||+|..|+ |||+
T Consensus 131 gl~AlS~-----n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAala---fs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 131 GLCALSP-----NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALA---FSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred ceEeecc-----CCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEE---ECCCCCEEEEeccCceEEEEE
Confidence 4555555 56677877643 56899999999999999997 9999999999 6999999999999998 6899
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~ 299 (1081)
.+.+|+.+.++..-.. -..|.+++|+| ++++|.+.|..++|+|+.+....
T Consensus 202 ~v~~G~kl~eFRRG~~----~~~IySL~Fs~---ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 202 SVPEGQKLYEFRRGTY----PVSIYSLSFSP---DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EcCCccEeeeeeCCce----eeEEEEEEECC---CCCeEEEecCCCeEEEEEecccc
Confidence 9999987766521111 24588999999 99999999999999999987544
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=134.19 Aligned_cols=181 Identities=20% Similarity=0.278 Sum_probs=131.7
Q ss_pred EEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEE
Q 001416 205 RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1081)
Q Consensus 205 ~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsg 284 (1081)
+.++ ||++-|+|+.| +.+|.+|+|||.|-.+.|||.-..+.+..+ -.||...|.++.|-|. .+..+++||
T Consensus 44 ~eL~-GH~GCVN~LeW---n~dG~lL~SGSDD~r~ivWd~~~~KllhsI-----~TgHtaNIFsvKFvP~-tnnriv~sg 113 (758)
T KOG1310|consen 44 AELT-GHTGCVNCLEW---NADGELLASGSDDTRLIVWDPFEYKLLHSI-----STGHTANIFSVKFVPY-TNNRIVLSG 113 (758)
T ss_pred hhhc-cccceecceee---cCCCCEEeecCCcceEEeecchhcceeeee-----ecccccceeEEeeecc-CCCeEEEec
Confidence 3455 99999999998 889999999999999999999876654432 3689999999999994 355788999
Q ss_pred ECCCeEEEEECCCCcee----eEecCCCccccCCCCeEEEeecCCCC--EEEEECCce--EEEeccCCcccccccccccC
Q 001416 285 GADKTLAIWDTVSFKEL----RRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELS 356 (1081)
Q Consensus 285 s~Dg~V~iWDl~t~~~~----~~~~~~~~~~~h~~~v~~v~~spd~~--lls~s~D~~--IWdi~~~~~~~~~~~~~~~~ 356 (1081)
+.|..|+++|+...+.- ...........|...|..++-.|+++ +.++|+||. -+|++.+.........
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~---- 189 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC---- 189 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc----
Confidence 99999999999752211 01112223477888999999999986 559999984 5888764321111100
Q ss_pred CCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 357 SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 357 ~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
......+.+.- ....|++.+|..++++++|+.|-.. +++|.|.
T Consensus 190 -~~~l~ny~~~l-ielk~ltisp~rp~~laVGgsdpfa-rLYD~Rr 232 (758)
T KOG1310|consen 190 -PSILVNYNPQL-IELKCLTISPSRPYYLAVGGSDPFA-RLYDRRR 232 (758)
T ss_pred -cHHHHHhchhh-heeeeeeecCCCCceEEecCCCchh-hhhhhhh
Confidence 00001111122 2677999999999999999999996 9999543
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.4e-10 Score=136.81 Aligned_cols=168 Identities=12% Similarity=0.013 Sum_probs=112.2
Q ss_pred ecccCCCCCeEEEEEecCc-EE--EEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEE-CCCeEEEEEcCC
Q 001416 125 SPPPSTKGRHFLVICCVNK-AI--FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS 200 (1081)
Q Consensus 125 sl~fsp~g~~~l~s~s~d~-~i--~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs-~Dg~I~lwd~~~ 200 (1081)
.++|+|||+.++++.+.++ .- .||..+++.. ....+...+...+| +|+|+.|+..+ .+|...||++..
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~w-----SpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS---QLTSGAGNNTEPSW-----SPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE---eeccCCCCcCCEEE-----CCCCCEEEEEECCCCCceEEEEEC
Confidence 5679999986666655444 32 3566654322 23345556788999 78999877665 578889998753
Q ss_pred C-eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 201 W-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 201 ~-~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
. .....+ ++.. .+.. ++|+|+.++.++.++ +.+||+.+++.... ...+ ...++.|+| ++.
T Consensus 324 ~~~~~~~l--~~~~--~~~~---~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l------t~~~--~~~~~~~sP---dG~ 384 (429)
T PRK01742 324 SGGGASLV--GGRG--YSAQ---ISADGKTLVMINGDN-VVKQDLTSGSTEVL------SSTF--LDESPSISP---NGI 384 (429)
T ss_pred CCCCeEEe--cCCC--CCcc---CCCCCCEEEEEcCCC-EEEEECCCCCeEEe------cCCC--CCCCceECC---CCC
Confidence 2 222222 3433 3455 499999999888765 45599988763211 1111 234678999 999
Q ss_pred EEEEEECCCeEEEEEC--CCCceeeEecCCCccccCCCCeEEEeecCC
Q 001416 280 QLITIGADKTLAIWDT--VSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl--~t~~~~~~~~~~~~~~~h~~~v~~v~~spd 325 (1081)
+|+.++.++.+.+|++ .+++..+++ ..|...+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l------~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARL------PGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEc------cCCCCCCCCcccCCC
Confidence 9999999999888886 356666655 567777888899885
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.2e-10 Score=135.20 Aligned_cols=234 Identities=14% Similarity=0.067 Sum_probs=149.1
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecC---cEEEEEecCCCcccccccccCCCCeeEE
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d---~~i~wd~~t~~~~~~~~~~~~~~~I~~i 170 (1081)
+.+|.+||...... .....+ ...+.+..|+|||+.++.+..++ .+.+||+.+++...+..... ...++
T Consensus 183 ~~~i~i~d~dg~~~-----~~lt~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFNQ-----FIVNRS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAP 253 (429)
T ss_pred eEEEEEECCCCCCc-----eEeccC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCce
Confidence 57899999876542 222333 55788999999999665554333 35579998765444433332 23467
Q ss_pred EEeeccccCCCCEEEEEE-CCCeEEEE--EcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEe-CCCcEEEEEcCC
Q 001416 171 EFLSRSAVGDVPLVAFGS-SDGVIRVL--SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSADH 246 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sgs-~Dg~I~lw--d~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs-~Dg~V~vWd~~~ 246 (1081)
+| +|||+.|+.++ .+|.+.|| |+.+++. ..+. .|...+.+..| +|+|+.|+.++ .++...||+++.
T Consensus 254 ~w-----SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~w---SpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 254 AF-----SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSW---SPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred eE-----CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEE---CCCCCEEEEEECCCCCceEEEEEC
Confidence 89 78999888765 67876665 5555554 4454 56667778874 89999777655 578889998765
Q ss_pred CCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCC
Q 001416 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1081)
Q Consensus 247 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~ 326 (1081)
...... ...+.. .+..|+| ++.+|+..+.++ +.+||+.+++..... . .+ ....+.|+|+|
T Consensus 324 ~~~~~~------~l~~~~--~~~~~Sp---DG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~-----~~--~~~~~~~sPdG 383 (429)
T PRK01742 324 SGGGAS------LVGGRG--YSAQISA---DGKTLVMINGDN-VVKQDLTSGSTEVLS-S-----TF--LDESPSISPNG 383 (429)
T ss_pred CCCCeE------EecCCC--CCccCCC---CCCEEEEEcCCC-EEEEECCCCCeEEec-C-----CC--CCCCceECCCC
Confidence 332111 113333 4578999 899998888766 455999888754221 1 11 12357799999
Q ss_pred CEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC
Q 001416 327 DIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1081)
Q Consensus 327 ~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~ 380 (1081)
++| .++.++ .+|.+...+ +.....+..+.. .++..+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~-------------G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSAD-------------GRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-------------CCceEEccCCCC-CCCCcccCCC
Confidence 966 555554 467654211 233345555555 6788899885
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.6e-10 Score=137.62 Aligned_cols=192 Identities=17% Similarity=0.290 Sum_probs=152.9
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccccccccee
Q 001416 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1081)
Q Consensus 179 p~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~ 258 (1081)
-+...++.++.++.+.+||+..+.....+.........+..-...+++.-++++|+.-+.|.+|+....+ +...
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------~p~~ 170 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------KPIR 170 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------Ccce
Confidence 4677899999999999999988777776642222222222222378888899999999999999987322 1225
Q ss_pred ecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEEEEECCc--e
Q 001416 259 LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS--H 336 (1081)
Q Consensus 259 l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~--~ 336 (1081)
+.+|++.+.++.|+- ++.++++.|+|+++++|++.+.+... ...-+|+..+|.++|+|. .++++++|. +
T Consensus 171 l~GHeG~iF~i~~s~---dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n-~i~t~gedctcr 241 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSL---DGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN-RIITVGEDCTCR 241 (967)
T ss_pred ecccCCceEEEEEcc---CCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc-eeEEeccceEEE
Confidence 789999999999998 99999999999999999999987654 235799999999999999 788999996 7
Q ss_pred EEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCC
Q 001416 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 337 IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~ 403 (1081)
+|+.+- ....++..|....+|.++.++. ..+++|+++||.+ ++||...+
T Consensus 242 vW~~~~----------------~~l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~l-k~~~l~~r 290 (967)
T KOG0974|consen 242 VWGVNG----------------TQLEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTL-KLWDLNGR 290 (967)
T ss_pred EEeccc----------------ceehhhhhhhhcceeEEEEcCC-ceEEEeeccCcch-hhhhhhcc
Confidence 997663 2223566777779999999997 7788999999996 99997654
No 221
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=99.25 E-value=6.1e-14 Score=154.90 Aligned_cols=225 Identities=10% Similarity=0.019 Sum_probs=146.8
Q ss_pred CCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
+..+++|.+.-.. ....+.+..|++.++-.+|.|++.+. ....++|+|||+. |+|.+.+......+.|.....
T Consensus 33 ~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~l~~~~~~~ 111 (266)
T cd05064 33 ELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSN-GALDSFLRKHEGQLVAGQLMG 111 (266)
T ss_pred eeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCC-CcHHHHHHhCCCCCCHHHHHH
Confidence 4457888766432 12223355677777778899999887 4678999999999 999887754333445554444
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+++|+.|||...+ |+.++++|++++....+|++|||+......+..... .....+ ..|
T Consensus 112 ~--------~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~--------~~y 174 (266)
T cd05064 112 M--------LPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTT-MSGKSP--------VLW 174 (266)
T ss_pred H--------HHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccchhcc-cCCCCc--------eee
Confidence 4 5678899999999888 999999999999999999999997543221110000 000111 237
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
.|||+... ...+.+.||||||++++|+.. |..|+.. .+.++.. -.+.++
T Consensus 175 ~aPE~~~~-----------~~~~~~~Di~slG~~l~ell~~g~~p~~~--~~~~~~~-------~~~~~~---------- 224 (266)
T cd05064 175 AAPEAIQY-----------HHFSSASDVWSFGIVMWEVMSYGERPYWD--MSGQDVI-------KAVEDG---------- 224 (266)
T ss_pred cCHHHHhh-----------CCccchhHHHHHHHHHHHHhcCCCCCcCc--CCHHHHH-------HHHHCC----------
Confidence 88887531 112345799999999888654 6556531 1100000 000000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...+. ...|+....+++.+||..+|..||++.+|.+.|+++
T Consensus 225 -~~~~~-----~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 225 -FRLPA-----PRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred -CCCCC-----CCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 00111 113556678999999999999999999999988764
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=8.1e-10 Score=123.28 Aligned_cols=271 Identities=15% Similarity=0.189 Sum_probs=176.8
Q ss_pred CCCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCC-ccceEEe--ccCCCeEEEeecCCCCCceeeecC
Q 001416 9 PTNDKIVKIQLHPTHPW-LVTADASDHVSVWNWEHRQVIYELKAGG-VDQRRLV--GAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~-Lasgs~dg~I~IWd~~t~~~i~~~~~~~-~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
+|...-+.|..+|||++ ++||-+--.|++||+..-.+. |..|- ...+.+. +.+-..++.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~------------- 113 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQ------------- 113 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEee-------------
Confidence 67788889999999994 566778889999999764332 22111 1112211 22222221111
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCC
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDN 164 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~ 164 (1081)
.|.+|.+-.-.. ..- ...+ ...-..++++.-.--++++|+...++++++..++ -+..+....
T Consensus 114 --------~DR~IefHak~G-~hy--~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr--fL~P~~~~~ 175 (703)
T KOG2321|consen 114 --------NDRTIEFHAKYG-RHY--RTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR--FLNPFETDS 175 (703)
T ss_pred --------cCceeeehhhcC-eee--eeec-----CcCCccccccCCCccEEEeecCcceEEEEccccc--ccccccccc
Confidence 244443321110 000 0000 1111334444333338888888899999999875 344456666
Q ss_pred CCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEec-----cccc-----ceEEEEEeeeCCCCCEEEEEe
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-----GHKG-----SISCLMTFMASSGEALLVSGG 234 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~-----~h~~-----~V~~l~w~~~s~d~~~l~sgs 234 (1081)
..++++.. ++...+|++|+.+|.|..||.++...+.++.. .|.+ .|+++. |+.+|-.++.|.
T Consensus 176 ~~lN~v~i-----n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~---F~d~gL~~aVGt 247 (703)
T KOG2321|consen 176 GELNVVSI-----NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK---FRDDGLHVAVGT 247 (703)
T ss_pred ccceeeee-----cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEE---ecCCceeEEeec
Confidence 89999999 56788999999999999999988766655531 2333 388898 688899999999
Q ss_pred CCCcEEEEEcCCCCcccccccceeeccc--CCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCcccc
Q 001416 235 SDGLLILWSADHGQDSRELVPKLSLKAH--DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 235 ~Dg~V~vWd~~~~~~~~~~~~~~~l~~h--~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
.+|.|.|||+++.+.+. .+.| .-+|..+.|.+. ++.+.++| .+...++|||-.+|+....+.+
T Consensus 248 s~G~v~iyDLRa~~pl~-------~kdh~~e~pi~~l~~~~~-~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp------ 312 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLL-------VKDHGYELPIKKLDWQDT-DQQNKVVS-MDKRILKIWDECTGKPMASIEP------ 312 (703)
T ss_pred cCCcEEEEEcccCCcee-------ecccCCccceeeeccccc-CCCceEEe-cchHHhhhcccccCCceeeccc------
Confidence 99999999999987543 2344 467899999883 23445554 4577899999999998877643
Q ss_pred CCCCeEEEeecCCCCEE-EEECCce
Q 001416 313 HSVASWCHPRAPNLDIL-TCVKDSH 336 (1081)
Q Consensus 313 h~~~v~~v~~spd~~ll-s~s~D~~ 336 (1081)
+..+..+|+-|++-++ ++-+++.
T Consensus 313 -t~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 313 -TSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred -cCCcCceeeecCCceEEEecCCCc
Confidence 3346678888988766 4444443
No 223
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3e-10 Score=120.71 Aligned_cols=253 Identities=9% Similarity=0.004 Sum_probs=170.4
Q ss_pred cccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCC----cccccc-cccCCCCeeEEEEeeccccCCCCEEEEEE
Q 001416 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMR----GRDIPK-QELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1081)
Q Consensus 115 ~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~----~~~~~~-~~~~~~~I~~ia~~p~~~sp~~~~l~sgs 188 (1081)
..+| .+.|.++.|+.+++ ++++|++|.-.+ |++...- .+.+.. ...|...|.|++| ...+..+++|.
T Consensus 52 ~~~H-~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-----~~~N~~~~SG~ 124 (609)
T KOG4227|consen 52 VREH-TGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-----DLENRFLYSGE 124 (609)
T ss_pred hhhh-ccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE-----ccCCeeEecCC
Confidence 3455 77899999999976 999999998774 9875321 122222 2345589999999 56778899999
Q ss_pred CCCeEEEEEcCCCeEEEEEeccccc---ceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCc
Q 001416 189 SDGVIRVLSMISWKLVRRYTGGHKG---SISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1081)
Q Consensus 189 ~Dg~I~lwd~~~~~~~~~~~~~h~~---~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~ 265 (1081)
.+++|.+.|+++.+.+..+. |.. .|+.+. .+|-.+.|++.+.++.|.+||.+......+ .+-+....+.
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~--~~~~~~~VY~m~---~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN~~~~ 196 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVAN--ENNNRGDVYHMD---QHPTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPANSGKN 196 (609)
T ss_pred CcceeEeeecccceeeeeec--ccCcccceeecc---cCCCCceEEEEecCceEEEEeccCCCCCCc---eeeecCCCcc
Confidence 99999999999999888874 544 899887 578889999999999999999987652222 1112334456
Q ss_pred EEEEEEeeecCCCCEEEEEECCCeEEEEECCCCc-eeeEecCCCccccCCCCeEEEeecCCCCEEEEECCc---eEEEec
Q 001416 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS---HIWAIE 341 (1081)
Q Consensus 266 V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~-~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s~D~---~IWdi~ 341 (1081)
..++.|+|. ...+|++.+..+-+.+||.+..+ ++.+......+......-..+.|+|.|..+.+-..+ -+||+.
T Consensus 197 F~t~~F~P~--~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 197 FYTAEFHPE--TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ceeeeecCC--CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 788999993 66788899999999999997643 222221112222211112367899998855332222 367776
Q ss_pred cCCcccccccccccCCCCCCeEEc----cC-CCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 342 HPTYSALTRPLCELSSLVPPQVLA----HH-KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
+.. .++..+. +. ...-+.+++|-.+ +-+++|+++=.+ ++|.+.
T Consensus 275 S~R--------------~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i-~~WklP 322 (609)
T KOG4227|consen 275 SQR--------------CFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGI-HIWKLP 322 (609)
T ss_pred ccc--------------ceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccce-EEEecC
Confidence 421 1111111 00 1114566777765 347999999885 999754
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=3.7e-10 Score=133.58 Aligned_cols=247 Identities=14% Similarity=0.084 Sum_probs=160.6
Q ss_pred eeecccCCCCCeEEEEEecCcEEEEEecCCCcccc-cccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC-C
Q 001416 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDI-PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-S 200 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~-~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~-~ 200 (1081)
-..+.|+|-.+.++++...+.+.+||.+.++...- .........|+.+.+.. ..|..++++|+.||.||||+-. +
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN---e~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN---EQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeec---ccchhheeeeccCceEEEeccccc
Confidence 35567888777555555567777899987643211 11223456899999975 3567789999999999999752 2
Q ss_pred ----CeEEEEEe------cccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEE
Q 001416 201 ----WKLVRRYT------GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1081)
Q Consensus 201 ----~~~~~~~~------~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~ 270 (1081)
.+.+..+. .+-.+.-.-++| ....|. |+++|.-..|+|||.........+ ..+.+..|+++.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW--qQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~di-----P~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDW--QQQSGH-LLVTGDVRSIRIWDAHKEQVVADI-----PYGSSTLVTALS 1215 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeeh--hhhCCe-EEecCCeeEEEEEecccceeEeec-----ccCCCccceeec
Confidence 23333221 112222244556 244554 555555889999999987765543 233556678777
Q ss_pred EeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCC--eEEEeecCCCC--EEEEECCc--eEEEeccCC
Q 001416 271 LSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA--SWCHPRAPNLD--ILTCVKDS--HIWAIEHPT 344 (1081)
Q Consensus 271 fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~--v~~v~~spd~~--lls~s~D~--~IWdi~~~~ 344 (1081)
-+. ..++.++.|-.||.|++||.+....-. .+...+.|+.. |..+.+-+.|- +++++.|| ++||++..
T Consensus 1216 ~~~--~~gn~i~AGfaDGsvRvyD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~- 1289 (1387)
T KOG1517|consen 1216 ADL--VHGNIIAAGFADGSVRVYDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS- 1289 (1387)
T ss_pred ccc--cCCceEEEeecCCceEEeecccCCccc---cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-
Confidence 655 367999999999999999987644311 11223667765 88888877554 78999887 57999863
Q ss_pred cccccccccccCCCCCCeEEccCC--CccEEEEEEeCCCCeEEEEEECCCeEEEEeCCC
Q 001416 345 YSALTRPLCELSSLVPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~ 401 (1081)
. .+. ..+...|. +...+++..|++ ..++|+|+. +.| +||+..
T Consensus 1290 ~-~e~-----------~~~iv~~~~yGs~lTal~VH~h-apiiAsGs~-q~i-kIy~~~ 1333 (1387)
T KOG1517|consen 1290 S-KET-----------FLTIVAHWEYGSALTALTVHEH-APIIASGSA-QLI-KIYSLS 1333 (1387)
T ss_pred c-ccc-----------cceeeeccccCccceeeeeccC-CCeeeecCc-ceE-EEEecC
Confidence 1 111 01111222 225899999998 677899998 886 899854
No 225
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-12 Score=151.67 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=153.4
Q ss_pred CCCCccEEEEeec-cccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 663 EAAPQNFQLYSWE-TFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 663 ~~~~~~i~~~~~~-~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
+--.||||-..-- +.+.-|..+-|.-.|--=+|.|+..+. +.-+.|||||=-. |+|..-|.+.+-+..|..-.
T Consensus 656 re~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMEN-GsLDsFLR~~DGqftviQLV 734 (996)
T KOG0196|consen 656 REITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMEN-GSLDSFLRQNDGQFTVIQLV 734 (996)
T ss_pred cceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhC-CcHHHHHhhcCCceEeehHH
Confidence 3445788754211 112223367788888889999999998 6789999999888 99998887766554444322
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhc-ccccCCcchhhhhhhc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD-RIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 814 (1081)
-. ..-|..||.||-.-.- |--|--.|.+|++.-|||++||||..+...+.+... ..+=.-|.-
T Consensus 735 gM--------LrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiR------- 799 (996)
T KOG0196|consen 735 GM--------LRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIR------- 799 (996)
T ss_pred HH--------HHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCcccee-------
Confidence 11 3457789999955444 999999999999999999999999988433321110 001112333
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc-cee-eecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG-VAV-AVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
|||||--.+-.+ +.+.|||||||.+.|+..=| -|| .++..+ .+-.+.++
T Consensus 800 -WTAPEAIa~RKF-----------TsASDVWSyGIVmWEVmSyGERPYWdmSNQd----------VIkaIe~g------- 850 (996)
T KOG0196|consen 800 -WTAPEAIAYRKF-----------TSASDVWSYGIVMWEVMSYGERPYWDMSNQD----------VIKAIEQG------- 850 (996)
T ss_pred -ecChhHhhhccc-----------CchhhccccceEEEEecccCCCcccccchHH----------HHHHHHhc-------
Confidence 999999765322 23469999999999997533 333 222222 00001112
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
|.|++|. .|+...-.||..||..+...||.|.+|-..|.||
T Consensus 851 ------yRLPpPm---DCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDkl 891 (996)
T KOG0196|consen 851 ------YRLPPPM---DCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKL 891 (996)
T ss_pred ------cCCCCCC---CCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 3333322 6889999999999999999999999999998876
No 226
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=99.23 E-value=9.1e-14 Score=156.74 Aligned_cols=232 Identities=8% Similarity=-0.049 Sum_probs=138.5
Q ss_pred CCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc----------
Q 001416 665 APQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT---------- 728 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~---------- 728 (1081)
..+++|.+.-.... ....+..|++.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.....
T Consensus 47 ~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~ 125 (304)
T cd05096 47 LLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMEN-GDLNQFLSSHHLDDKEENGNDA 125 (304)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCceEEEEecCCC-CcHHHHHHhccccccccccccc
Confidence 34788877543211 112244567777778899999987 3568999999998 898876543110
Q ss_pred --------ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcc
Q 001416 729 --------GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDR 799 (1081)
Q Consensus 729 --------~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~ 799 (1081)
.+.|.....+ +.++++|+.|||...+ |+.+|++|++++....+|++|||+...-.........
T Consensus 126 ~~~~~~~~~~~~~~~~~i--------~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~ 197 (304)
T cd05096 126 VPPAHCLPAISYSSLLHV--------ALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQ 197 (304)
T ss_pred cccccccccccHHHHHHH--------HHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCceeEec
Confidence 0111111122 5578899999999988 9999999999999999999999987532111000000
Q ss_pred cccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCC-CCcE
Q 001416 800 IKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPI-GPLV 878 (1081)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ 878 (1081)
.....+.. |.|||+.... ..+.+.||||||++++|++.+..+.....++.++.... ...+
T Consensus 198 ~~~~~~~~--------y~aPE~~~~~-----------~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~ 258 (304)
T cd05096 198 GRAVLPIR--------WMAWECILMG-----------KFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFF 258 (304)
T ss_pred CcCCCCcc--------ccCHHHHhcC-----------CCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHh
Confidence 00000111 6788875321 12345799999999998875433222222221110000 0000
Q ss_pred EeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 879 VVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 879 ~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
... .. ...+. ....|+....+++..||..+|..||++..|.++|+.
T Consensus 259 ----~~~-------~~---~~~~~---~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~ 304 (304)
T cd05096 259 ----RDQ-------GR---QVYLF---RPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE 304 (304)
T ss_pred ----hhc-------cc---ccccc---CCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence 000 00 00000 011355667899999999999999999999998863
No 227
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=99.22 E-value=1.5e-13 Score=157.37 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=139.0
Q ss_pred CCCCccEEEEeeccc-cccCCCCCCcceeeec-ccCceEEEee------eeEEEEEecCcccccccccccccccce----
Q 001416 663 EAAPQNFQLYSWETF-QPVGGLLPQPEWTAWD-QTVEYCAFAY------QHYIVISSLCPQYRYLGDVAIPYATGA---- 730 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~-~~~~~~~~~~------~~~~~v~~y~~~~gsl~d~~~~~~~~~---- 730 (1081)
.++.+++|.+.-... .....+..|++.+.-. +|.|++.+.. ...++|+|||+. |+|.+.+.......
T Consensus 36 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~-g~L~~~l~~~~~~~~~~~ 114 (338)
T cd05102 36 SCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKY-GNLSNFLRAKREFFSPYR 114 (338)
T ss_pred cchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCC-CcHHHHHHhcchhccccc
Confidence 455688887753221 1122344566555555 7999998872 247889999999 99987664311000
Q ss_pred ---------------------------------------------------eeEeeeeeEeccCce--EEEeeeCCcccc
Q 001416 731 ---------------------------------------------------VWHRRQLFVVTPTTI--ECVFVDAGVAAI 757 (1081)
Q Consensus 731 ---------------------------------------------------~w~~~~~~~~t~~~i--~~~~~~~gm~~l 757 (1081)
.|..... ...+ -+..++.|+.||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~qi~~aL~~L 190 (338)
T cd05102 115 EKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLT----MEDLICYSFQVARGMEFL 190 (338)
T ss_pred ccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCC----HHHHHHHHHHHHHHHHHH
Confidence 0000000 0000 023688899999
Q ss_pred chhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCC
Q 001416 758 DVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGD 836 (1081)
Q Consensus 758 h~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 836 (1081)
|...+ |+.+|+.|+++|....+|++|||+..................+. .|.|||+....
T Consensus 191 H~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~--------~y~aPE~~~~~----------- 251 (338)
T cd05102 191 ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPL--------KWMAPESIFDK----------- 251 (338)
T ss_pred HHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCc--------cccCcHHhhcC-----------
Confidence 99888 99999999999999999999999875421110000000001111 27888876321
Q ss_pred CCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccccc
Q 001416 837 DSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYG 915 (1081)
Q Consensus 837 ~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 915 (1081)
.-+.+.||||||++++|+++ |..|+.....+. . +.....++ ..... ...+.....
T Consensus 252 ~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~-------~~~~~~~~-------------~~~~~---~~~~~~~l~ 307 (338)
T cd05102 252 VYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-E-------FCQRLKDG-------------TRMRA---PENATPEIY 307 (338)
T ss_pred CCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-H-------HHHHHhcC-------------CCCCC---CCCCCHHHH
Confidence 12345799999999999885 666664322110 0 00000001 00000 112344567
Q ss_pred cHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 916 DSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 916 ~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+++..||..+|..||++..|.+.|+.+
T Consensus 308 ~li~~cl~~dp~~RPs~~el~~~l~~~ 334 (338)
T cd05102 308 RIMLACWQGDPKERPTFSALVEILGDL 334 (338)
T ss_pred HHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 899999999999999999999998864
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.22 E-value=2.3e-10 Score=126.80 Aligned_cols=229 Identities=18% Similarity=0.226 Sum_probs=155.1
Q ss_pred eeecccCCCCCeEEEEEecCcEEEEEecCC--CcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC
Q 001416 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTM--RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~--~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~ 200 (1081)
+....++-.|+ .|+-.-.+.+++|+++.+ ..+.+.+.........|-+|.-....+.+--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd-~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGD-RLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCC-EEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 34444555666 444444556667877732 223444444555667777775444457777899999999999999865
Q ss_pred CeEEEEEe---cccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCc----------------------cccccc
Q 001416 201 WKLVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD----------------------SRELVP 255 (1081)
Q Consensus 201 ~~~~~~~~---~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~----------------------~~~~~~ 255 (1081)
.+..+.+. .-.+..|+|+.|. +-+...|+.+-.+|.+.++|....-. ...-.|
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 32222121 1235789999995 66667888889999999997642100 000012
Q ss_pred ceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECC
Q 001416 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKD 334 (1081)
Q Consensus 256 ~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D 334 (1081)
...+.--++.|+..+|+| |+.+|++.|.||.+||+|..+.+.+... ..--+...|++|||||++| +||+|
T Consensus 283 v~~w~~~~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~m------kSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVM------KSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred cceeEeccccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHH------HhhccceEEEEEcCCccEEEecCCc
Confidence 222333346789999999 9999999999999999999887655432 3445678899999999977 67888
Q ss_pred c--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeC
Q 001416 335 S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHS 379 (1081)
Q Consensus 335 ~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp 379 (1081)
. .||.+.. .+.+..=.+|+. +|+.|+|.|
T Consensus 354 DLVtVwSf~e---------------rRVVARGqGHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 354 DLVTVWSFEE---------------RRVVARGQGHKS-WVSVVAFDP 384 (636)
T ss_pred ceEEEEEecc---------------ceEEEecccccc-ceeeEeecc
Confidence 5 7999874 222233456777 999999987
No 229
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=6.5e-09 Score=111.07 Aligned_cols=236 Identities=12% Similarity=0.147 Sum_probs=163.2
Q ss_pred CeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECC--CeEEEEEcC
Q 001416 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD--GVIRVLSMI 199 (1081)
Q Consensus 122 ~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D--g~I~lwd~~ 199 (1081)
.+..+.|..+.. ++..|+.++..+|...... ........+..|--+=| ...++|..+.+ +.+++.+.+
T Consensus 7 ti~~~~~Nqd~~-~lsvGs~~Gyk~~~~~~~~--k~~~~~~~~~~IvEmLF-------SSSLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 7 TINFIGFNQDST-LLSVGSKDGYKIFSCSPFE--KCFSKDTEGVSIVEMLF-------SSSLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred ceeeeeecccee-EEEccCCCceeEEecCchH--HhhcccCCCeEEEEeec-------ccceeEEEecCCCceEEEEEcc
Confidence 345566877775 8999999998888665432 12222233344555555 34566665544 459999999
Q ss_pred CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 200 ~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
.+..+..+. ....|.++. .. .+.|+.+=.+ .|.|||+++-+.+..+ .+...+..++.++.+++ .+.
T Consensus 77 k~~~ICe~~--fpt~IL~Vr---mN--r~RLvV~Lee-~IyIydI~~MklLhTI---~t~~~n~~gl~AlS~n~---~n~ 142 (391)
T KOG2110|consen 77 KKTTICEIF--FPTSILAVR---MN--RKRLVVCLEE-SIYIYDIKDMKLLHTI---ETTPPNPKGLCALSPNN---ANC 142 (391)
T ss_pred cCceEEEEe--cCCceEEEE---Ec--cceEEEEEcc-cEEEEecccceeehhh---hccCCCccceEeeccCC---CCc
Confidence 888887774 667899987 23 3355554444 5999999998866543 22345667787777776 666
Q ss_pred EEEEEE--CCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc---eEEEeccCCccccccccc
Q 001416 280 QLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS---HIWAIEHPTYSALTRPLC 353 (1081)
Q Consensus 280 ~Lvsgs--~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~---~IWdi~~~~~~~~~~~~~ 353 (1081)
+++-=+ ..|.|.+||..+-+++..+ ..|.+.+-|++|+|+|.+| ++|+.| ||+.+..+
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~I------~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---------- 206 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNTI------NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---------- 206 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeEE------EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc----------
Confidence 777433 4689999999998887776 7999999999999999988 566666 56777642
Q ss_pred ccCCCCCCeEEc-cCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCCCCCC
Q 001416 354 ELSSLVPPQVLA-HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1081)
Q Consensus 354 ~~~~~~~~~~l~-~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~~~~~ 404 (1081)
..+..|+ +..-..|.+++|||+ ..+|++.++.++| ++|.+.+..
T Consensus 207 -----~kl~eFRRG~~~~~IySL~Fs~d-s~~L~~sS~TeTV-HiFKL~~~~ 251 (391)
T KOG2110|consen 207 -----QKLYEFRRGTYPVSIYSLSFSPD-SQFLAASSNTETV-HIFKLEKVS 251 (391)
T ss_pred -----cEeeeeeCCceeeEEEEEEECCC-CCeEEEecCCCeE-EEEEecccc
Confidence 1112221 222347899999999 6677999999997 899876544
No 230
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=99.21 E-value=3.4e-13 Score=151.13 Aligned_cols=222 Identities=11% Similarity=0.095 Sum_probs=150.3
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+|||-..=++.. +-+.++|.--|.+..|.|||++. -|-.+|||||-+- |.|-|-|..-+.++.-.--++. .
T Consensus 295 vAVKtLKEDtMe-veEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~y-GNLLdYLRecnr~ev~avvLly--M 370 (1157)
T KOG4278|consen 295 VAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCY-GNLLDYLRECNRSEVPAVVLLY--M 370 (1157)
T ss_pred eehhhhhhcchh-HHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccC-ccHHHHHHHhchhhcchhHHHH--H
Confidence 555544333322 33456677779999999999998 4778999999887 8877766542222111111111 1
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..|..||+||..-.. |--|--.||+|.-.-++|++||||..|-..++...+ .+..-|.- |||||
T Consensus 371 -----AtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAH-AGAKFPIK--------WTAPE 436 (1157)
T KOG4278|consen 371 -----ATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAH-AGAKFPIK--------WTAPE 436 (1157)
T ss_pred -----HHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecc-cCccCccc--------ccCcc
Confidence 3467789999988666 999999999999999999999999998665543332 22334445 99999
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEE-Eecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWL-IDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~d~~~~~~~~ 899 (1081)
-+.++++ +++.|||.|++.+.||++ |.++.++ |+.-.+||- +.+. |
T Consensus 437 sLAyNtF-----------SiKSDVWAFGVLLWEIAT----YGMsPYP-------------GidlSqVY~LLEkg-----y 483 (1157)
T KOG4278|consen 437 SLAYNTF-----------SIKSDVWAFGVLLWEIAT----YGMSPYP-------------GIDLSQVYGLLEKG-----Y 483 (1157)
T ss_pred ccccccc-----------ccchhhHHHHHHHHHHHh----cCCCCCC-------------CccHHHHHHHHhcc-----c
Confidence 9988754 345799999999999987 5544444 111111110 0000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
....| --|+...-+||.+||.-.|.+||.|..|-..++.|
T Consensus 484 RM~~P---eGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtm 523 (1157)
T KOG4278|consen 484 RMDGP---EGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETM 523 (1157)
T ss_pred cccCC---CCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHH
Confidence 00000 13777888999999999999999999999998877
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=1.3e-09 Score=114.97 Aligned_cols=250 Identities=18% Similarity=0.255 Sum_probs=163.3
Q ss_pred ceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCcee
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNW-EHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 4 l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~-~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~ 80 (1081)
++.++||.+.|+....-|..+-+++.+.|.++|||-- +.++.-..+........... .++...|..
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v----------- 85 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV----------- 85 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE-----------
Confidence 5678999999999999999999999999999999963 33443333322222222222 233333333
Q ss_pred eecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEe-cCCCcccccc
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDL-VTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~-~t~~~~~~~~ 159 (1081)
.+..|++.-+.+...-..-...+....| ...+..+-|+.... ++++.+.|+-+.|-- +.+....-..
T Consensus 86 ----------g~~ngtvtefs~sedfnkm~~~r~~~~h-~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~ 153 (404)
T KOG1409|consen 86 ----------GQDNGTVTEFALSEDFNKMTFLKDYLAH-QARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYN 153 (404)
T ss_pred ----------EEecceEEEEEhhhhhhhcchhhhhhhh-hcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceE
Confidence 3345555555443322111223333444 66788888887765 788888888887733 2221000000
Q ss_pred cccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC--CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCC
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI--SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1081)
Q Consensus 160 ~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~--~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg 237 (1081)
+ .....++.+ +-.+...|...|.|.+-.+. .-..+.++. +|.+.+.++.| .+....|.+|..|.
T Consensus 154 ~---~~~~t~~~~-------d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~W---d~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 154 F---ETPASALQF-------DALYAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKW---DPGQRLLFSGASDH 219 (404)
T ss_pred e---eccCCCCce-------eeEEEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEE---cCCCcEEEeccccC
Confidence 0 011112222 11145556666666665553 346667776 99999999997 77788999999999
Q ss_pred cEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCC
Q 001416 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1081)
Q Consensus 238 ~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~ 298 (1081)
.+.+||+...+.. ...+.+|.+.|..+.+-+ --..+++++.||.|.+||++..
T Consensus 220 ~vi~wdigg~~g~-----~~el~gh~~kV~~l~~~~---~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 220 SVIMWDIGGRKGT-----AYELQGHNDKVQALSYAQ---HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceEEEeccCCcce-----eeeeccchhhhhhhhhhh---hheeeeeccCCCeEEEEeccce
Confidence 9999999876533 345789999999999887 7789999999999999998753
No 232
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=99.20 E-value=2e-13 Score=154.94 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=158.8
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+.+..... ...+..|++.++-.+|.|++.+. ....++|++||+ |+|.+.+......++|...
T Consensus 50 ~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~--g~l~~~~~~~~~~l~~~~~ 127 (317)
T cd06635 50 NEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL--GSASDLLEVHKKPLQEVEI 127 (317)
T ss_pred CcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC--CCHHHHHHHhcCCCCHHHH
Confidence 4458888887653322 22355677777888899999988 356789999997 5676666543444555444
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..++.|+.|||...+ ||.++++|++++....+|++|||+.......... ... .
T Consensus 128 ~~i--------~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~------~~~--------~ 185 (317)
T cd06635 128 AAI--------THGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSF------VGT--------P 185 (317)
T ss_pred HHH--------HHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCcccc------cCC--------c
Confidence 333 5678899999999988 9999999999999999999999986542211100 011 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
+|.|||+..... +.....+.||||+|++++++++|..|+...... . ..+.. ....
T Consensus 186 ~y~aPE~~~~~~--------~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~--~-----~~~~~-~~~~--------- 240 (317)
T cd06635 186 YWMAPEVILAMD--------EGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--S-----ALYHI-AQNE--------- 240 (317)
T ss_pred cccChhhhhcCC--------CCCCCccccHHHHHHHHHHHHhCCCCCCCccHH--H-----HHHHH-Hhcc---------
Confidence 277888753211 111233479999999999999988776421100 0 00000 0000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhcC-------------cHHHHhccccchHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMG-------------YATEALHLPGISKRLEFD 961 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~-------------~~~yA~~le~lv~ert~~ 961 (1081)
.++...........+++..|+..+|..||.+..|.+.+.... +++++.+||.++.+|+.+
T Consensus 241 -------~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (317)
T cd06635 241 -------SPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERPETVLIDLIQRTKDAVRELDNLQYRKMKK 313 (317)
T ss_pred -------CCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhccCcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 000001122334578999999999999999999886432211 678888888888888877
Q ss_pred HH
Q 001416 962 LA 963 (1081)
Q Consensus 962 L~ 963 (1081)
|+
T Consensus 314 ~~ 315 (317)
T cd06635 314 LL 315 (317)
T ss_pred Hh
Confidence 65
No 233
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=99.20 E-value=1.5e-13 Score=153.16 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=152.8
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEee-------eeEEEEEecCcccccccccccccccceeeEee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAY-------QHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~~-------~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
.|..+++|.+...+....+.+..|++.+.-.+|.|++.+.. ...++|++|++. |+|.+.+.+....+.|...
T Consensus 32 ~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~l~~~~~ 110 (284)
T cd05081 32 TGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPY-GSLRDYLQKHRERLDHRKL 110 (284)
T ss_pred CCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCC-CCHHHHHHhcCcCCCHHHH
Confidence 45668899887665555555667777888889999999862 357899999999 9998877543333555544
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+++|+.|||...+ |+.+|++|++++....+|++|||+............ ...+ .....
T Consensus 111 ~~~--------~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~---~~~~----~~~~~ 175 (284)
T cd05081 111 LLY--------ASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYK---VREP----GESPI 175 (284)
T ss_pred HHH--------HHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCCccee---ecCC----CCCce
Confidence 444 5578899999999999 999999999999999999999998765322111000 0000 00123
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
+|.|||.... ...+.+.||||+|++++|++++..+..... ... ....+.......+.....
T Consensus 176 ~y~aPE~~~~-----------~~~~~~~Di~slG~~l~el~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~ 236 (284)
T cd05081 176 FWYAPESLTE-----------SKFSVASDVWSFGVVLYELFTYSDKSCSPP---AEF-----MRMMGNDKQGQMIVYHLI 236 (284)
T ss_pred EeeCHHHhcc-----------CCcChHHHHHHHHHHHHHHhhcCCcCCCcc---hhh-----hhhcccccccccchHHHH
Confidence 4778887532 113345799999999999987655432110 000 000000000000000000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+...-....+ ....++....+++..||..+|..||+...|.+.|+++
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~ 283 (284)
T cd05081 237 ELLKNNGRLP-APPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI 283 (284)
T ss_pred HHHhcCCcCC-CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence 0000000000 1123456678999999999999999999999998764
No 234
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=6e-13 Score=151.45 Aligned_cols=220 Identities=11% Similarity=0.044 Sum_probs=150.6
Q ss_pred CCCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+|+|.++++.+.- ..++..|++.-+-+.|.|+|.|. ..|+++|+|+|++ |||..++.. ...+.-..
T Consensus 42 tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~-~sL~el~Kr-rk~ltEpE 119 (592)
T KOG0575|consen 42 TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHR-GSLMELLKR-RKPLTEPE 119 (592)
T ss_pred CCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCC-ccHHHHHHh-cCCCCcHH
Confidence 46779999999965432 33478899999999999999999 7899999999999 999877653 23332222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
--.| ..-|+.|+.|||+..| |--||=+|...+....+||+||||-++-..+.. .+.++.--.-
T Consensus 120 ary~--------l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E--rk~TlCGTPN------ 183 (592)
T KOG0575|consen 120 ARYF--------LRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE--RKKTLCGTPN------ 183 (592)
T ss_pred HHHH--------HHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccc--ccceecCCCc------
Confidence 1223 4578899999999999 999999999999999999999999997321111 1111111111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.-|||++-. . | -++..||||-|.++|.+.+|..||.-..+. |.++. ++.+
T Consensus 184 --YIAPEVl~k-----~----g--HsfEvDiWSlGcvmYtLL~G~PPFetk~vk-ety~~--------Ik~~-------- 233 (592)
T KOG0575|consen 184 --YIAPEVLNK-----S----G--HSFEVDIWSLGCVMYTLLVGRPPFETKTVK-ETYNK--------IKLN-------- 233 (592)
T ss_pred --ccChhHhcc-----C----C--CCCchhhhhhhhHHHhhhhCCCCcccchHH-HHHHH--------HHhc--------
Confidence 347888641 1 2 345579999999999999999999755442 00000 0000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH--HHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA--QFM 939 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~--~~l 939 (1081)
.|..+ -....+..+|+...-..+|..||.-++|- .|+
T Consensus 234 ----~Y~~P-----~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff 272 (592)
T KOG0575|consen 234 ----EYSMP-----SHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFF 272 (592)
T ss_pred ----Ccccc-----cccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhh
Confidence 00000 02233456777777777889999888875 455
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.20 E-value=5.2e-11 Score=129.65 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=188.4
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEE
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~v 241 (1081)
...-....+.| +.+|.+++.|+..|.|-.+||.+++....+. -...|..+.|+ +. ..+|+ ......+.|
T Consensus 127 l~eFGPY~~~y-----trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~L--Hn-eq~~A-VAQK~y~yv 195 (545)
T KOG1272|consen 127 LPEFGPYHLDY-----TRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFL--HN-EQFFA-VAQKKYVYV 195 (545)
T ss_pred ccccCCeeeee-----cCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhh--cc-hHHHH-hhhhceEEE
Confidence 33445677888 7899999999999999999999999887774 56778888864 33 33444 567889999
Q ss_pred EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEe
Q 001416 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1081)
Q Consensus 242 Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~ 321 (1081)
||-.. ..+. .++.| ..|..+.|-| ..-+|++++..|.++.-|+.+|+.+..+ ..-.+.+..+.
T Consensus 196 YD~~G-tElH------Clk~~-~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~------~t~~G~~~vm~ 258 (545)
T KOG1272|consen 196 YDNNG-TELH------CLKRH-IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASI------RTGAGRTDVMK 258 (545)
T ss_pred ecCCC-cEEe------ehhhc-Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHH------HccCCccchhh
Confidence 99544 3332 23444 5689999999 7889999999999999999999987665 44556666788
Q ss_pred ecCCCCEE-EEECCc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEe
Q 001416 322 RAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1081)
Q Consensus 322 ~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iw 398 (1081)
-.|-+-++ .|...| .+|.-++ ..|+..+-.|.. +|.++++.++ ++++||.+-|..+ +||
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~s---------------kePLvKiLcH~g-~V~siAv~~~-G~YMaTtG~Dr~~-kIW 320 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNS---------------KEPLVKILCHRG-PVSSIAVDRG-GRYMATTGLDRKV-KIW 320 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCC---------------cchHHHHHhcCC-CcceEEECCC-CcEEeecccccce-eEe
Confidence 88887777 565666 5798776 344455557887 9999999998 7778999999996 999
Q ss_pred CCCCCCCCcccCCCCCCCCceEEEEecCcEEEEEEeecCCCCCCCCCCcccCCCCCcCCC-chhHHhhhhcccccccccC
Q 001416 399 DPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGD-LPDALQIKQIKKHISTPVP 477 (1081)
Q Consensus 399 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~l~~~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~~~~ 477 (1081)
|+|....+.++.++... +.+.++++.+.-..+..... +|... +..+|..... ..+.+...-.... +.|
T Consensus 321 DlR~~~ql~t~~tp~~a---~~ls~SqkglLA~~~G~~v~----iw~d~-~~~s~~~~~pYm~H~~~~~V~~l~---FcP 389 (545)
T KOG1272|consen 321 DLRNFYQLHTYRTPHPA---SNLSLSQKGLLALSYGDHVQ----IWKDA-LKGSGHGETPYMNHRCGGPVEDLR---FCP 389 (545)
T ss_pred eeccccccceeecCCCc---cccccccccceeeecCCeee----eehhh-hcCCCCCCcchhhhccCcccccce---ecc
Confidence 99998877776552221 12334444443333321111 11000 0000000000 0000000001111 236
Q ss_pred CCCCCeEEEccCCCEEEEecCCCCce
Q 001416 478 HDSYSILSVSSSGKYLAVVWPDIPYF 503 (1081)
Q Consensus 478 ~~~~~~l~~S~~G~~lav~~~~~~~~ 503 (1081)
+++ .|.+.+.|.+-+++.||.|+.
T Consensus 390 ~ED--vLGIGH~~G~tsilVPGsGeP 413 (545)
T KOG1272|consen 390 YED--VLGIGHAGGITSILVPGSGEP 413 (545)
T ss_pred HHH--eeeccccCCceeEeccCCCCC
Confidence 665 799999999999888877764
No 236
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=99.19 E-value=2.4e-13 Score=149.34 Aligned_cols=224 Identities=8% Similarity=-0.012 Sum_probs=141.5
Q ss_pred CccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 666 PQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 666 ~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
.+++|...-+... ....+..|...++-.+|.|++.+. .+..++|+||++. |+|.+.+......+.+.....+
T Consensus 24 ~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~-- 100 (257)
T cd05115 24 DVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASG-GPLNKFLSGKKDEITVSNVVEL-- 100 (257)
T ss_pred eEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCC-CCHHHHHHhCCCCCCHHHHHHH--
Confidence 3677766443221 112234455556667899999988 4678899999999 9998876542333444433334
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhc-ccccCCcchhhhhhhccccC
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD-RIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+..+..|+.|||...+ |+.+|++|++++....+|++|||+............ ...-..+.. |+|
T Consensus 101 ------~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~--------y~a 166 (257)
T cd05115 101 ------MHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLK--------WYA 166 (257)
T ss_pred ------HHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcc--------cCC
Confidence 6688899999999988 999999999999999999999998764221111000 000000112 677
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
||..... ..+.+.||||+|+++++++. |..|+... +..... .-+..+ .
T Consensus 167 PE~~~~~-----------~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~-------~~~~~~-----------~ 215 (257)
T cd05115 167 PECINFR-----------KFSSRSDVWSYGITMWEAFSYGQKPYKKM--KGPEVM-------SFIEQG-----------K 215 (257)
T ss_pred HHHHccC-----------CCCchhhHHHHHHHHHHHhcCCCCCcCcC--CHHHHH-------HHHHCC-----------C
Confidence 7764321 12234799999999999875 66665421 100000 000000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..+ ..-.+..+..+++..||..+|..||++.+|++.|+..
T Consensus 216 ~~~-----~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 216 RLD-----CPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred CCC-----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 000 0113456777899999999999999999999998764
No 237
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.8e-10 Score=123.53 Aligned_cols=197 Identities=17% Similarity=0.084 Sum_probs=141.2
Q ss_pred eecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCe
Q 001416 124 ASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1081)
Q Consensus 124 ~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~ 202 (1081)
..++|+.+|. .+++++.|+.++ |++.++. .+.....|...|.++.| +||++.|++-+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~F-----S~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDF-----SPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch--hhhhhHhhcCcccccee-----CCCCcEEEEecCC-ceEEEEeccCc
Confidence 6789999987 677777777664 9866543 45556788999999999 8999999999999 89999999997
Q ss_pred EEEEEecccccce-EEEEEeeeCCCC-----CEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecC
Q 001416 203 LVRRYTGGHKGSI-SCLMTFMASSGE-----ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1081)
Q Consensus 203 ~~~~~~~~h~~~V-~~l~w~~~s~d~-----~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~ 276 (1081)
.+....+....+. ..+. |..++ .+++.-..-+.|+.||+.....-... +..+...-...|.+++.++
T Consensus 219 ~~a~~t~~~k~~~~~~cR---F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l-~~~~~~~~~~siSsl~VS~--- 291 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCR---FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL-RLRKKIKRFKSISSLAVSD--- 291 (398)
T ss_pred hhhhcCCcccchhhhhce---ecccCCCceEEEEEecCCCCceeEEEeeeecccccc-chhhhhhccCcceeEEEcC---
Confidence 7776653233333 3333 45555 33344444567788777654321111 1111122235799999998
Q ss_pred CCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE-EEECCc--eEEEec
Q 001416 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIE 341 (1081)
Q Consensus 277 ~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll-s~s~D~--~IWdi~ 341 (1081)
+|++++.|+.||.|-|++..+.+.++-+ .+.|...|+.+.|+||.+.+ +.+.|. +|..+.
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq~~~~v-----k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQRLQYV-----KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceeeeeEee-----hhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999999999999988877765 36899999999999998866 455553 454443
No 238
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=99.18 E-value=2.9e-13 Score=153.55 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=144.3
Q ss_pred ccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|.+...+. ...+++..|+..+.-.+|.|++.+. .++.++|++|++. |+|.|.+......+.+.....+
T Consensus 39 vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~e~~~~-g~l~~~l~~~~~~~~~~~~~~~--- 114 (316)
T cd05108 39 VAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPF-GCLLDYVREHKDNIGSQYLLNW--- 114 (316)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeeeecCCC-CCHHHHHHhccccCCHHHHHHH---
Confidence 67777654322 2233455566677778899999988 4567899999999 9998876543333444433333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+.+++.|+.|||...+ |+.+|++|++++....+|++|||+...-..............+.. |.|||
T Consensus 115 -----~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~--------y~apE 181 (316)
T cd05108 115 -----CVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIK--------WMALE 181 (316)
T ss_pred -----HHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCcccee--------ecChH
Confidence 5688999999999998 999999999999999999999998865322111100000011112 77888
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
..... ..+.+.||||||++++|+++ |..|+.. .+.+++.. . ...+ ...
T Consensus 182 ~~~~~-----------~~~~~~Di~slGv~l~el~t~g~~p~~~--~~~~~~~~---~----~~~~-----------~~~ 230 (316)
T cd05108 182 SILHR-----------IYTHQSDVWSYGVTVWELMTFGSKPYDG--IPASEISS---I----LEKG-----------ERL 230 (316)
T ss_pred HhccC-----------CCCchhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHH---H----HhCC-----------CCC
Confidence 75321 12345799999999999876 5555531 11100000 0 0000 000
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+. ...|.....+++..||..+|..||.+..|...|.++
T Consensus 231 ~~-----~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~ 268 (316)
T cd05108 231 PQ-----PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 268 (316)
T ss_pred CC-----CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 10 113455667899999999999999999999887765
No 239
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=5.8e-09 Score=110.72 Aligned_cols=254 Identities=16% Similarity=0.227 Sum_probs=159.8
Q ss_pred CCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccc-ccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~-~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd 197 (1081)
+..+..++|++.-. -++++..|.++ +||-... +...+ ......|+|++|-|. .+..+++|+..| |.+|.
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPl----saselavgCr~g-IciW~ 168 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPL----SASELAVGCRAG-ICIWS 168 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccC----Ccceeeeeecce-eEEEE
Confidence 44677888988554 34444444444 5876552 22222 233468999999664 244678887765 88998
Q ss_pred cCC-C---eE--------EEEEe-cccccceEEEEEeeeCCCCCEEEEEeC-CCcEEEEEcCCCCcccccccceeecccC
Q 001416 198 MIS-W---KL--------VRRYT-GGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHD 263 (1081)
Q Consensus 198 ~~~-~---~~--------~~~~~-~~h~~~V~~l~w~~~s~d~~~l~sgs~-Dg~V~vWd~~~~~~~~~~~~~~~l~~h~ 263 (1081)
... . +. ...+. +|| .+|++++| .+||..+++++- |..|.|||.+++..+.- . .---
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw---n~dgt~l~tAS~gsssi~iWdpdtg~~~pL----~--~~gl 238 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW---NEDGTILVTASFGSSSIMIWDPDTGQKIPL----I--PKGL 238 (445)
T ss_pred cCcccccccccccccccchhheeCCCC-ceeeEEEE---cCCCCEEeecccCcceEEEEcCCCCCcccc----c--ccCC
Confidence 742 1 11 11222 245 79999997 788999998885 67899999999875432 1 1223
Q ss_pred CcEEEEEEeeecCCCCEEEEEECCCeEEEEEC-CCCceeeEecCCCccccCCCCeEEEeecCCCCEE--EEECCceEEEe
Q 001416 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDT-VSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSHIWAI 340 (1081)
Q Consensus 264 ~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl-~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll--s~s~D~~IWdi 340 (1081)
+++.-+.|+| |+.+|..+.-|+..++|+. ++....+- ..-++.|...+|+|+|..| +++...+||.+
T Consensus 239 gg~slLkwSP---dgd~lfaAt~davfrlw~e~q~wt~erw-------~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 239 GGFSLLKWSP---DGDVLFAATCDAVFRLWQENQSWTKERW-------ILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred CceeeEEEcC---CCCEEEEecccceeeeehhcccceecce-------eccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 6788999999 9999999999999999954 33333222 1223488899999999943 78888888888
Q ss_pred ccCCcccccc---------cccccCCCCCCeEEccC--CCccEEEEEEeCCCCeEEEEEECCCe-------EEEEeCCCC
Q 001416 341 EHPTYSALTR---------PLCELSSLVPPQVLAHH--KKLRVYCMVAHSLQPHLVATGTNVGV-------IISEFDPRS 402 (1081)
Q Consensus 341 ~~~~~~~~~~---------~~~~~~~~~~~~~l~~~--~~~~V~~l~~sp~~~~llatgs~dG~-------Il~iwd~~~ 402 (1081)
.......... .+.+++. +....+. -.+.+.+++|.|.|.++ |+-...+. .+.+||.+.
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e---~ti~ag~~l~cgeaq~lawDpsGeyL-av~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQE---VTICAGQRLCCGEAQCLAWDPSGEYL-AVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred eecCCCccccCcccceeeeeeccchh---hhhhcCcccccCccceeeECCCCCEE-EEEEcCCchhhhhhhhhhhhcccc
Confidence 7543222211 1111110 0011111 13378899999995555 55544332 225788776
Q ss_pred CCCC
Q 001416 403 LPAV 406 (1081)
Q Consensus 403 ~~~~ 406 (1081)
.+++
T Consensus 385 sp~v 388 (445)
T KOG2139|consen 385 SPPV 388 (445)
T ss_pred cCce
Confidence 5554
No 240
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=128.67 Aligned_cols=184 Identities=10% Similarity=0.056 Sum_probs=136.9
Q ss_pred eeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCC
Q 001416 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1081)
Q Consensus 6 ~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~ 85 (1081)
....|.+.|.|-.|+|+|.-|+|+++||.|++|+- +|-+-.
T Consensus 99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRS-------------------------------------- 139 (737)
T KOG1524|consen 99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRS-------------------------------------- 139 (737)
T ss_pred hhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHH--------------------------------------
Confidence 45689999999999999999999999999999983 221111
Q ss_pred ceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCC
Q 001416 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDN 164 (1081)
Q Consensus 86 ~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~ 164 (1081)
...+....|.|++|.|+.+.++.+.++...+. .-.+ ..+.....|+
T Consensus 140 -----------------------------tl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n----~k~i~WkAHD 186 (737)
T KOG1524|consen 140 -----------------------------TVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN----SKIIRWRAHD 186 (737)
T ss_pred -----------------------------HHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc----cceeEEeccC
Confidence 11111446889999999886666555443332 3222 2455678999
Q ss_pred CCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 165 ~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
+-|.|+.| ++..+.+++|++|-..++||.. |+.+..-. .|..+|++++| .|+ ..++.+| -++.|+=
T Consensus 187 GiiL~~~W-----~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~---npd-~~~~v~S-~nt~R~~-- 252 (737)
T KOG1524|consen 187 GLVLSLSW-----STQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAF---NPE-KDYLLWS-YNTARFS-- 252 (737)
T ss_pred cEEEEeec-----CccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeee---ccc-cceeeee-eeeeeec--
Confidence 99999999 6789999999999999999976 56666654 89999999995 777 5566555 3455521
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEE
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iW 293 (1081)
+...+.|..++|++ ||..++.|...|.+.+=
T Consensus 253 ---------------~p~~GSifnlsWS~---DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 253 ---------------SPRVGSIFNLSWSA---DGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------CCCccceEEEEEcC---CCceeeccccCceEEEe
Confidence 22346799999999 99999999998887653
No 241
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=99.16 E-value=4.4e-13 Score=149.14 Aligned_cols=204 Identities=13% Similarity=0.053 Sum_probs=132.1
Q ss_pred CCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEeccCceEEEeeeCCccccchh
Q 001416 685 PQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVE 760 (1081)
Q Consensus 685 ~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s 760 (1081)
.+...+.-.+|.|++.+. .+..++|++|++. |+|.+.+......+.|.....+ +..++.||.|||..
T Consensus 58 ~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~~-gsL~~~l~~~~~~~~~~~~~~i--------~~qi~~~l~~lH~~ 128 (279)
T cd05111 58 DHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSPL-GSLLDHVRQHRDSLDPQRLLNW--------CVQIAKGMYYLEEH 128 (279)
T ss_pred HHHHHHhcCCCCCcceEEEEECCCccEEEEEeCCC-CcHHHHHHhcccCCCHHHHHHH--------HHHHHHHHHHHHHC
Confidence 334344556899998887 4567899999999 9998877543334445443334 56788999999998
Q ss_pred hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCC
Q 001416 761 TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSM 839 (1081)
Q Consensus 761 ~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 839 (1081)
.+ |+.+|++|++++....+|++|||+...-..............+.. |.|||.... ...+
T Consensus 129 ~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~--------y~~pE~~~~-----------~~~~ 189 (279)
T cd05111 129 RMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIK--------WMALESILF-----------GRYT 189 (279)
T ss_pred CEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCccc--------ccCHHHhcc-----------CCcC
Confidence 88 999999999999999999999998764221110000000111222 677776531 1123
Q ss_pred CcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEee-eecCeEEEEeccccccccCCCCcccceecccccccH
Q 001416 840 MPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVG-VKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDS 917 (1081)
Q Consensus 840 ~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~ 917 (1081)
.++||||||++++|+++ |..|+...+.. + ... +..+ ..+..+ ..|.....++
T Consensus 190 ~~~Dv~slG~il~el~t~g~~p~~~~~~~--~--------~~~~~~~~-------------~~~~~~---~~~~~~~~~l 243 (279)
T cd05111 190 HQSDVWSYGVTVWEMMSYGAEPYAGMRPH--E--------VPDLLEKG-------------ERLAQP---QICTIDVYMV 243 (279)
T ss_pred chhhHHHHHHHHHHHHcCCCCCCCCCCHH--H--------HHHHHHCC-------------CcCCCC---CCCCHHHHHH
Confidence 45799999999999986 65555321110 0 000 0000 000000 1244556678
Q ss_pred HHHHhhhcccCcccHHHHHHHHHhc
Q 001416 918 VSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 918 ~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+..||..+|..||.+..+.+.|+.+
T Consensus 244 i~~c~~~~p~~Rps~~el~~~l~~~ 268 (279)
T cd05111 244 MVKCWMIDENVRPTFKELANEFTRM 268 (279)
T ss_pred HHHHcCCCcccCcCHHHHHHHHHHH
Confidence 9999999999999999998887764
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.15 E-value=4.6e-08 Score=112.13 Aligned_cols=292 Identities=14% Similarity=0.101 Sum_probs=171.1
Q ss_pred eeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecC
Q 001416 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1081)
Q Consensus 5 ~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g 84 (1081)
..+..+.+.-..+.|+|||+++..++.||.|.++|+.+++.+.+++.+....-..++++|++++.+.
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n------------- 96 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVAN------------- 96 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEE-------------
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEe-------------
Confidence 4454444444457899999999999999999999999999999999876555555599999988763
Q ss_pred CceEEEEEeCCeEEEEEcCCCccccccccccc---cCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCccccccc
Q 001416 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAV---SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 85 ~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~---~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~ 160 (1081)
+.++.+.++|..+.+..... +... ....+.+.++..+|..+.++++--+..-+ +.|+...+.... ..
T Consensus 97 -------~~~~~v~v~D~~tle~v~~I-~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~ 167 (369)
T PF02239_consen 97 -------YEPGTVSVIDAETLEPVKTI-PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TT 167 (369)
T ss_dssp -------EETTEEEEEETTT--EEEEE-E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EE
T ss_pred -------cCCCceeEeccccccceeec-ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-ee
Confidence 25899999999887753311 1110 01245677888888887666666654433 467765432211 22
Q ss_pred ccCCCCeeEEEEeeccccCCCCEEEEE-ECCCeEEEEEcCCCeEEEEEec---ccccceEEEEEeeeCCCC-C-------
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTG---GHKGSISCLMTFMASSGE-A------- 228 (1081)
Q Consensus 161 ~~~~~~I~~ia~~p~~~sp~~~~l~sg-s~Dg~I~lwd~~~~~~~~~~~~---~h~~~V~~l~w~~~s~d~-~------- 228 (1081)
...........| +|++++++++ ..++.|-++|.++++.+..+.. .|..++..+- +|.. .
T Consensus 168 i~~g~~~~D~~~-----dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p----hp~~g~vw~~~~~ 238 (369)
T PF02239_consen 168 IKVGRFPHDGGF-----DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP----HPGFGPVWATSGL 238 (369)
T ss_dssp EE--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE----ETTTEEEEEEEBS
T ss_pred eccccccccccc-----CcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc----CCCcceEEeeccc
Confidence 234456778888 7899987665 4677999999999988876642 3554544432 2322 1
Q ss_pred --EEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEE----ECCCeEEEEECCCCceee
Q 001416 229 --LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI----GADKTLAIWDTVSFKELR 302 (1081)
Q Consensus 229 --~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsg----s~Dg~V~iWDl~t~~~~~ 302 (1081)
..++.-....+.+||..+.+.++ ++.....+ .-+.-+| +++++... ...++|.++|.++.+.+.
T Consensus 239 ~~~~~~~ig~~~v~v~d~~~wkvv~------~I~~~G~g-lFi~thP---~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 239 GYFAIPLIGTDPVSVHDDYAWKVVK------TIPTQGGG-LFIKTHP---DSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp SSSEEEEEE--TTT-STTTBTSEEE------EEE-SSSS---EE--T---T-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred cceecccccCCccccchhhcCeEEE------EEECCCCc-ceeecCC---CCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 22122222344456655555433 34555555 6778899 88898887 456899999999987776
Q ss_pred EecCCCccccCCCCeEEEeecCCCCEE--EEECCc-e--EEEecc
Q 001416 303 RIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDS-H--IWAIEH 342 (1081)
Q Consensus 303 ~~~~~~~~~~h~~~v~~v~~spd~~ll--s~s~D~-~--IWdi~~ 342 (1081)
++.. +....+..+.|+++|+.+ |.-.+. + |||..+
T Consensus 309 ~i~~-----~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 309 TITP-----GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp -HHH-----HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred EEec-----cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 6522 112247789999999944 443332 4 577654
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.15 E-value=2.3e-08 Score=104.94 Aligned_cols=244 Identities=16% Similarity=0.241 Sum_probs=155.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEE
Q 001416 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1081)
Q Consensus 12 ~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~ 89 (1081)
....+++|+.|..-++.|..+| .+|++.+--+...+-+. ...+...+ -...++|| ++-|+. .
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~la------------LVGGg~--~ 69 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLA------------LVGGGS--R 69 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEE------------EecCCC--C
Confidence 3456699999998888886665 68999865222111111 11111111 11112222 222211 0
Q ss_pred EEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCC-CcccccccccCCCCee
Q 001416 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTM-RGRDIPKQELDNKSLV 168 (1081)
Q Consensus 90 v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~-~~~~~~~~~~~~~~I~ 168 (1081)
-.|..+.+-|||=...++ ...-.....|.++.+.++ .+++.-.+.+.+|...+. +...............
T Consensus 70 pky~pNkviIWDD~k~~~------i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERC------IIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred CCCCCceEEEEecccCcE------EEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceE
Confidence 123468899999444433 222233667899999765 477778888888876632 2111111122233333
Q ss_pred EEEEeeccccCCCCEEEE-EECCCeEEEEEcCCCeE--EEEEecccccceEEEEEeeeCCCCCEEEEEeCCCc-EEEEEc
Q 001416 169 CMEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILWSA 244 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~s-gs~Dg~I~lwd~~~~~~--~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~-V~vWd~ 244 (1081)
+++- +.+..+|+. |-.-|.|+|-|+...+. ...+. +|.+.|.|++ .+.+|.++||+|..|| |||||.
T Consensus 141 ~~~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~---Ln~~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 141 SLCP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVA---LNLQGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred eecC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEE---EcCCccEEEEeccCcEEEEEEEc
Confidence 3332 233444444 34569999999975444 24444 9999999998 6999999999999998 799999
Q ss_pred CCCCcccccccceeecc-cCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCC
Q 001416 245 DHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t 297 (1081)
.+++.+.++. .| ....|.+++|+| +..+|+.+|+.|+|+|+.++.
T Consensus 212 ~~g~~l~E~R-----RG~d~A~iy~iaFSp---~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 212 EDGTLLQELR-----RGVDRADIYCIAFSP---NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCcEeeeee-----cCCchheEEEEEeCC---CccEEEEEcCCCeEEEEEeec
Confidence 9999777642 22 235699999999 999999999999999999865
No 244
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=99.15 E-value=6.9e-13 Score=147.86 Aligned_cols=238 Identities=13% Similarity=0.012 Sum_probs=147.2
Q ss_pred CCCccEEEEeeccccc-cCCCCCCcceeeecccCceEEEee-------eeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQP-VGGLLPQPEWTAWDQTVEYCAFAY-------QHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l-~~~~~~~~k~v~w~~~~~~~~~~~-------~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
+..+++|.+.-..... ......|++.++=.+|.|++.+.. ...++|+|||+. |+|.+.+... .+.|...
T Consensus 33 ~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~--~l~~~~~ 109 (283)
T cd05080 33 GEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPL-GSLRDYLPKH--KLNLAQL 109 (283)
T ss_pred CceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCC-CCHHHHHHHc--CCCHHHH
Confidence 4457888876543211 122344666666778999998772 236899999998 8888776542 3444444
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ ...+.+|+.|||...+ |+.+|++|++++....+|++|||+...-....... .. ... .....
T Consensus 110 ~~i--------~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~-~~--~~~----~~~~~ 174 (283)
T cd05080 110 LLF--------AQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY-RV--RED----GDSPV 174 (283)
T ss_pred HHH--------HHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhh-cc--CCC----CCCCc
Confidence 334 5678899999999888 99999999999999999999999876422111100 00 000 01122
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCC-CCCCCC-cEEeeeecCeEEEEec
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQ-KRPIGP-LVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~p-~~~~~~~~~~~~~~d~ 892 (1081)
+|.|||.... ...+.+.||||+|++++|+++|..|+....-..+. ..+... ....... -++++
T Consensus 175 ~~~~PE~~~~-----------~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 239 (283)
T cd05080 175 FWYAVECLKE-----------NKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLI----ELLER 239 (283)
T ss_pred eeeCHhHhcc-----------cCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhh----hhhhc
Confidence 3778886532 11234579999999999999988776421111000 000000 0000000 00011
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.. ..+ ....++....+++..||..+|..||+++.|..+|+.+
T Consensus 240 ~~---~~~-----~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 240 GM---RLP-----CPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred CC---CCC-----CCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 00 011 1123556778999999999999999999999999875
No 245
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=99.14 E-value=6.6e-13 Score=147.32 Aligned_cols=217 Identities=6% Similarity=-0.052 Sum_probs=137.9
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
+...+++|.++-+..+..+....+...++-.+|.|++.+. .+..++|+|||+. |+|.+.+......+.+.....
T Consensus 43 ~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~-g~L~~~l~~~~~~~~~~~~~~ 121 (274)
T cd05076 43 RELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEH-GPLDVCLRKEKGRVPVAWKIT 121 (274)
T ss_pred eeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCC-CcHHHHHHhcCCCCCHHHHHH
Confidence 3444788888765544444444455566677899999988 3567899999999 999887755333445554444
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhh-------HhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSR-------AVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~r-------wv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
+ +..+++||.|||...+ |+.+|++|++++.. ..+|++|||+........ .. ...
T Consensus 122 i--------~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~---~~---~~~---- 183 (274)
T cd05076 122 V--------AQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSRE---ER---VER---- 183 (274)
T ss_pred H--------HHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccccccc---cc---ccC----
Confidence 4 6688999999999988 99999999999754 358999999753211100 00 011
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeec-CCcceeeecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVG-GGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
..|.|||..... ...+.+.||||||++++|++ .|..|+... .+.+.. .+...
T Consensus 184 ----~~~~aPe~~~~~----------~~~~~~~Dv~slG~~l~el~~~g~~p~~~~--~~~~~~--------~~~~~--- 236 (274)
T cd05076 184 ----IPWIAPECVPGG----------NSLSTAADKWSFGTTLLEICFDGEVPLKER--TPSEKE--------RFYEK--- 236 (274)
T ss_pred ----CcccCchhhcCC----------CCCCcHHHHHHHHHHHHHHHhCCCCCcccc--ChHHHH--------HHHHh---
Confidence 127788865321 11234579999999988874 454444311 100000 00000
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
..++.. .......+++..||..+|..||++.+|.+-|
T Consensus 237 ---------~~~~~~-----~~~~~~~~li~~cl~~~p~~Rps~~~il~~L 273 (274)
T cd05076 237 ---------KHRLPE-----PSCKELATLISQCLTYEPTQRPSFRTILRDL 273 (274)
T ss_pred ---------ccCCCC-----CCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence 000000 1112456899999999999999999987654
No 246
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=99.14 E-value=5.1e-13 Score=155.06 Aligned_cols=234 Identities=10% Similarity=-0.003 Sum_probs=138.4
Q ss_pred CCccEEEEeeccccc-cCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccccceee-----
Q 001416 665 APQNFQLYSWETFQP-VGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW----- 732 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l-~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w----- 732 (1081)
..+++|.+.-....- ...+..|++.++=. +|.|++.+. ....++|+|||+. |+|.+.+........+
T Consensus 69 ~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~-g~L~~~l~~~~~~~~~~~~~~ 147 (374)
T cd05106 69 LRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCCY-GDLLNFLRKKAETFLNFVMAL 147 (374)
T ss_pred ceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHhhccC-CcHHHHHHhhhhhhccccccc
Confidence 347888876433221 12244566666555 799999888 4678999999999 9988765431110000
Q ss_pred -------------EeeeeeEeccCc-----------------------------------------e--EEEeeeCCccc
Q 001416 733 -------------HRRQLFVVTPTT-----------------------------------------I--ECVFVDAGVAA 756 (1081)
Q Consensus 733 -------------~~~~~~~~t~~~-----------------------------------------i--~~~~~~~gm~~ 756 (1081)
.....++.++.+ + -+..++.|+.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~y 227 (374)
T cd05106 148 PEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDF 227 (374)
T ss_pred cccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 000000000000 0 02457789999
Q ss_pred cchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccC
Q 001416 757 IDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEG 835 (1081)
Q Consensus 757 lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 835 (1081)
||...+ |+.+|++|+++|...++|++|||+..................+. .|.|||+....
T Consensus 228 LH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~--------~y~aPE~~~~~---------- 289 (374)
T cd05106 228 LASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPV--------KWMAPESIFDC---------- 289 (374)
T ss_pred HHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCcc--------ceeCHHHhcCC----------
Confidence 999888 99999999999999999999999875321111000000001111 27788875321
Q ss_pred CCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceeccccc
Q 001416 836 DDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAY 914 (1081)
Q Consensus 836 ~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~ 914 (1081)
..+.+.||||+|++++|+++ |..|+...... ...+.. ...+ ++...+ ...+...
T Consensus 290 -~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~-------~~~~~~-~~~~-------------~~~~~~---~~~~~~l 344 (374)
T cd05106 290 -VYTVQSDVWSYGILLWEIFSLGKSPYPGILVN-------SKFYKM-VKRG-------------YQMSRP---DFAPPEI 344 (374)
T ss_pred -CCCccccHHHHHHHHHHHHhCCCCCCcccccc-------HHHHHH-HHcc-------------cCccCC---CCCCHHH
Confidence 12345799999999999885 66666422111 000000 0000 000000 0123456
Q ss_pred ccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 915 GDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 915 ~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++++.||..+|..||++..|.+.|+++
T Consensus 345 ~~li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 345 YSIMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 7899999999999999999999999874
No 247
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.14 E-value=1.7e-09 Score=120.04 Aligned_cols=212 Identities=16% Similarity=0.201 Sum_probs=138.8
Q ss_pred EEE-eCCeEEEEEcCCCccccccccccccCCCCCeeeccc-----CCCCCeEEEEEecCcEEEEEecCCCccccccc--c
Q 001416 90 VNF-YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP-----STKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ--E 161 (1081)
Q Consensus 90 v~f-~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~f-----sp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~--~ 161 (1081)
++| ....+.+|+...+......+........ .-.+-+| .|++-.+++.-..+.+..+|....+...+... .
T Consensus 138 lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~ 216 (636)
T KOG2394|consen 138 LCFNVGRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERL 216 (636)
T ss_pred EEEecCCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhccc
Confidence 444 3566888988854322212211111101 1122222 34555566666666666666654221111111 2
Q ss_pred cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC--------------CeEEEEEe-ccc------------ccc
Q 001416 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------------WKLVRRYT-GGH------------KGS 214 (1081)
Q Consensus 162 ~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~--------------~~~~~~~~-~~h------------~~~ 214 (1081)
.....++|+.|.| .+...++.+-.+|.+.+||..- +......+ ..+ ++.
T Consensus 217 i~ktsvT~ikWvp----g~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~ 292 (636)
T KOG2394|consen 217 INKSSVTCIKWVP----GSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGS 292 (636)
T ss_pred ccccceEEEEEEe----CCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccc
Confidence 2347899999987 3556778888999999997621 11111110 011 223
Q ss_pred eEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEE
Q 001416 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1081)
Q Consensus 215 V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWD 294 (1081)
|+..+ |+|||++||+.|.||.+||||..+.+.+.. ++..-++..|++|+| |++||++|+.|-.|.||.
T Consensus 293 in~f~---FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSP---DGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 293 INEFA---FSPDGKYLATVSQDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSP---DGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccee---EcCCCceEEEEecCceEEEeeccHHHHHHH------HHhhccceEEEEEcC---CccEEEecCCcceEEEEE
Confidence 44443 788999999999999999999988764432 345558899999999 999999999999999999
Q ss_pred CCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 295 TVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 295 l~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
+..++.+.+- .+|..+|..++|.|
T Consensus 361 f~erRVVARG------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARG------QGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEec------cccccceeeEeecc
Confidence 9998887663 89999999999998
No 248
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=99.14 E-value=1e-12 Score=144.15 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=146.5
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEeee-------eEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQ-------HYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~~~-------~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
|...|||-.+-.+..-...+..|.+.++-..|.|+|.+... .+++++||||. |||.+...+..-++.-..-.
T Consensus 42 g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~-GsL~~~~~~~g~~l~E~~v~ 120 (313)
T KOG0198|consen 42 GELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPG-GSLSDLIKRYGGKLPEPLVR 120 (313)
T ss_pred CcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCC-CcHHHHHHHcCCCCCHHHHH
Confidence 45567777666532223335667777888889999998843 69999999999 99998877632121111111
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhh-hHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQS-RAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~-rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
.+ ...|..|+.|||...+ |..+|.+|.++|. -|.+||+|||+-............. .-++..-
T Consensus 121 ~y--------tr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~-------~~~~Gtp 185 (313)
T KOG0198|consen 121 RY--------TRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSE-------LSVQGTP 185 (313)
T ss_pred HH--------HHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccccccccc-------ccccCCc
Confidence 12 4578899999999888 9999999999999 5999999999765322111110100 0112334
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
+|+|||+.+. |.....+.||||++...+|+++|..|+... +.. ...++..+....
T Consensus 186 ~~maPEvi~~----------g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~-----~~~~~~ig~~~~--------- 240 (313)
T KOG0198|consen 186 NYMAPEVIRN----------GEVARRESDIWSLGCTVVEMLTGKPPWSEF-FEE-----AEALLLIGREDS--------- 240 (313)
T ss_pred cccCchhhcC----------CCcCCccchhhhcCCEEEeccCCCCcchhh-cch-----HHHHHHHhccCC---------
Confidence 5999999753 111223479999999999999998888642 210 011122221111
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.|.+......+..+|+..|-..+|..||+...+-
T Consensus 241 --------~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL 274 (313)
T KOG0198|consen 241 --------LPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELL 274 (313)
T ss_pred --------CCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence 1122223455678999999999999999888764
No 249
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=99.14 E-value=7.2e-13 Score=153.93 Aligned_cols=152 Identities=11% Similarity=0.012 Sum_probs=95.8
Q ss_pred EeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcC
Q 001416 748 VFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLT 826 (1081)
Q Consensus 748 ~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 826 (1081)
..+++|+.|||...+ |+.+|+.|++++....+|++|||+..................+.. |.|||+....
T Consensus 221 ~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~~- 291 (375)
T cd05104 221 YQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVK--------WMAPESIFNC- 291 (375)
T ss_pred HHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcc--------eeChhHhcCC-
Confidence 477889999999888 999999999999999999999998764221111000000011112 7788876321
Q ss_pred CCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcc
Q 001416 827 MPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPG 905 (1081)
Q Consensus 827 ~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~ 905 (1081)
..+.+.||||||++++|+++ |..|+.....+ ...+. -+..+ .....+
T Consensus 292 ----------~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~-------~~~~~-~~~~~-------------~~~~~~- 339 (375)
T cd05104 292 ----------VYTFESDVWSYGILLWEIFSLGSSPYPGMPVD-------SKFYK-MIKEG-------------YRMLSP- 339 (375)
T ss_pred ----------CCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch-------HHHHH-HHHhC-------------ccCCCC-
Confidence 12345799999999999886 44454321111 00000 00000 000000
Q ss_pred cceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 906 IRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..++....+++..||..+|..||.+..|.+.|+++
T Consensus 340 --~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~ 374 (375)
T cd05104 340 --ECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ 374 (375)
T ss_pred --CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence 11234567999999999999999999999998863
No 250
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=99.14 E-value=5.7e-13 Score=146.27 Aligned_cols=225 Identities=8% Similarity=-0.028 Sum_probs=142.5
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
+..+++|.+.-+... ....+..|+..+.-.+|.|++.+. .+..++|++|++. |+|.+.+... ..+.+.....
T Consensus 22 ~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~~~~~ 99 (257)
T cd05116 22 EKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAEL-GPLNKFLQKN-KHVTEKNITE 99 (257)
T ss_pred ceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCC-CcHHHHHHhc-CCCCHHHHHH
Confidence 455788877544322 222344455566667899999887 4677899999998 8888776442 2233322222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhc-ccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD-RIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 815 (1081)
+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+...-........ ......+..
T Consensus 100 i--------~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~-------- 163 (257)
T cd05116 100 L--------VHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVK-------- 163 (257)
T ss_pred H--------HHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCcc--------
Confidence 3 5578889999999888 999999999999999999999998764221111000 000000112
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
|.|||..... ..+.+.|+||+|++++|+++ |..|+...... +.. -.+..+ .
T Consensus 164 y~aPE~~~~~-----------~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~-------~~i~~~--------~ 215 (257)
T cd05116 164 WYAPECMNYY-----------KFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN--EVT-------QMIESG--------E 215 (257)
T ss_pred ccCHhHhccC-----------CcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHH-------HHHHCC--------C
Confidence 6677765311 12234799999999999986 66666421110 000 000000 0
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++ +...++....++++.||..+|..||.++.|.+.|+..
T Consensus 216 ---~~~-----~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~ 255 (257)
T cd05116 216 ---RME-----CPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY 255 (257)
T ss_pred ---CCC-----CCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence 001 0113556677999999999999999999999998764
No 251
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=99.13 E-value=4.5e-13 Score=150.34 Aligned_cols=229 Identities=7% Similarity=-0.044 Sum_probs=137.7
Q ss_pred ccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc-----------c
Q 001416 667 QNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT-----------G 729 (1081)
Q Consensus 667 ~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~-----------~ 729 (1081)
+++|.+.-+.. .....+..|++.+.-.+|.|++.+. ....++|+|||+. ++|.+.+..... .
T Consensus 47 vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~~ 125 (295)
T cd05097 47 VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMEN-GDLNQFLSQREIESTFTHANNIPS 125 (295)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEEEecCCC-CcHHHHHHhccccccccccccCCc
Confidence 67777753311 1111244566677778899999887 5678999999999 899877643211 1
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.|.....+ +.++++|+.|||...+ |+.++++|++++..+.+|++|||+...-..............+..
T Consensus 126 ~~~~~~~~i--------~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~- 196 (295)
T cd05097 126 VSIANLLYM--------AVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIR- 196 (295)
T ss_pred ccHHHHHHH--------HHHHHHHHHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCcee-
Confidence 122222222 5578899999999988 999999999999999999999998753211100000000001122
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCC-CCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPI-GPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~ 887 (1081)
|.|||.... ...+.+.||||||+++++++++..+.....+..++.... ...+.. ....+
T Consensus 197 -------y~aPE~~~~-----------~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~ 256 (295)
T cd05097 197 -------WMAWESILL-----------GKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRN--QGRQI 256 (295)
T ss_pred -------ecChhhhcc-----------CCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhh--ccccc
Confidence 778886532 112345799999999999876433222212221110000 000000 00000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
+ ... ...++....+++..||..+|..||+++.|.++|+
T Consensus 257 ~-----------~~~----~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 257 Y-----------LSQ----TPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred c-----------CCC----CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 0 000 0023456779999999999999999999999886
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=8.6e-10 Score=121.08 Aligned_cols=271 Identities=14% Similarity=0.191 Sum_probs=180.6
Q ss_pred cccCCCCCeeecccCCCCCeEEEEEecCcEEE-EEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeE
Q 001416 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1081)
Q Consensus 115 ~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I 193 (1081)
+..| .+.|..+.|...|. ++++|+++..++ ||+...+. ......+|...|..-.|.|. .+..-+++++.||.+
T Consensus 138 L~~H-~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 138 LNKH-KGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQV 211 (559)
T ss_pred ccCC-CCccceeeecccCc-eeeccCccceEEeehhhccCc-ccccccccccchhhhhccCC---CCCcCceeccccCce
Confidence 3445 78899999999997 899999998875 99987652 33345678888888889885 445679999999999
Q ss_pred EEEEcC-CCeEE-EEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCC---cEEE
Q 001416 194 RVLSMI-SWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG---GVVA 268 (1081)
Q Consensus 194 ~lwd~~-~~~~~-~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~---~V~~ 268 (1081)
++=.+. ++.+. ......|.++|.-++. -+-....|.|++.|+.+.-+|++.+.....+. .-+.+.. ...+
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CREADEKERVGLYT 286 (559)
T ss_pred eeeeeccccceecceecccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceee---eeccCCccceeeee
Confidence 987774 34333 1222479999999882 45556789999999999999999876544321 2233444 5688
Q ss_pred EEEeeecCCCCEEEEEECCCeEEEEECCCCce------eeEecCCCccccCCCCeEEEeecCCCC-EEEEECCceEEEec
Q 001416 269 VELSRVMGGSPQLITIGADKTLAIWDTVSFKE------LRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHIWAIE 341 (1081)
Q Consensus 269 v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~------~~~~~~~~~~~~h~~~v~~v~~spd~~-lls~s~D~~IWdi~ 341 (1081)
++.+| .+...+++++.|..+++||.+.-.. +.++-+-.-.......|+|+.|+.++. ++++=.|.-||-.+
T Consensus 287 Ia~~P--~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDP--RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCC--CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 89998 4667999999999999999875332 233322222222334789999996655 77666665554443
Q ss_pred cCCccccccccccc--CCCCCCeEEccCCC-ccEEEEEE-eCCCCeEEEEEECCCeEEEEeCCCC
Q 001416 342 HPTYSALTRPLCEL--SSLVPPQVLAHHKK-LRVYCMVA-HSLQPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 342 ~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~V~~l~~-sp~~~~llatgs~dG~Il~iwd~~~ 402 (1081)
. .......+...- .... .+.+.+|.+ .-|.++-| -|. ..++++|++.|.| +||+-..
T Consensus 365 ~-~~~~G~~p~~~s~~~~~~-k~vYKGHrN~~TVKgVNFfGPr-sEyVvSGSDCGhI-FiW~K~t 425 (559)
T KOG1334|consen 365 K-SMGDGSEPDPSSPREQYV-KRVYKGHRNSRTVKGVNFFGPR-SEYVVSGSDCGHI-FIWDKKT 425 (559)
T ss_pred c-ccccCCCCCCCcchhhcc-chhhcccccccccceeeeccCc-cceEEecCccceE-EEEecch
Confidence 3 221111111100 0111 123566653 23556655 454 7889999999997 9999543
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.13 E-value=1.4e-08 Score=116.34 Aligned_cols=324 Identities=13% Similarity=0.086 Sum_probs=183.4
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCccce-EEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcC
Q 001416 25 WLVTADASDHVSVWNWEHRQVIYELKAGGVDQR-RLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1081)
Q Consensus 25 ~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v-~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~ 103 (1081)
++++-..+|.|.|.|..+.+.+.++..+..... ...+++++++...+ .|+.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~---------------------rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN---------------------RDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE---------------------TTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc---------------------CCCeEEEEECC
Confidence 345666789999999999999999986543222 23389999887754 48999999999
Q ss_pred CCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccc-cccc----cCCCCeeEEEEeeccc
Q 001416 104 RNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI-PKQE----LDNKSLVCMEFLSRSA 177 (1081)
Q Consensus 104 ~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~-~~~~----~~~~~I~~ia~~p~~~ 177 (1081)
+.+... ..+. ...-.++++++||+.+++++.....+ ++|.++.+.... .... .....+..+..
T Consensus 67 ~~~~v~-~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~----- 135 (369)
T PF02239_consen 67 TGKVVA-TIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA----- 135 (369)
T ss_dssp SSSEEE-EEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-----
T ss_pred cccEEE-EEec-----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe-----
Confidence 988422 1111 23457899999999777777655555 699988653321 1111 12346667766
Q ss_pred cCCCCEEEEE-ECCCeEEEEEcCCCeEEE-EEecccccceEEEEEeeeCCCCCEEEEE-eCCCcEEEEEcCCCCcccccc
Q 001416 178 VGDVPLVAFG-SSDGVIRVLSMISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADHGQDSRELV 254 (1081)
Q Consensus 178 sp~~~~l~sg-s~Dg~I~lwd~~~~~~~~-~~~~~h~~~V~~l~w~~~s~d~~~l~sg-s~Dg~V~vWd~~~~~~~~~~~ 254 (1081)
+|..+.++.. -+.+.|-+.|....+.+. ... .......... ++|++++++.+ ..++.|-++|..+++....+.
T Consensus 136 s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i-~~g~~~~D~~---~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 136 SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI-KVGRFPHDGG---FDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp -SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE-E--TTEEEEE---E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cCCCCEEEEEEccCCeEEEEEeccccccceeee-cccccccccc---cCcccceeeecccccceeEEEeeccceEEEEee
Confidence 5667755544 455889888987653332 222 2334445554 58999887664 557789999988876443211
Q ss_pred cceeecccCCcEEEE-------EEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC
Q 001416 255 PKLSLKAHDGGVVAV-------ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1081)
Q Consensus 255 ~~~~l~~h~~~V~~v-------~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ 327 (1081)
. --..|..++..+ .|... ..+...++.-....+.+||..+++.++++ .....+ ..+..||+++
T Consensus 212 ~--g~~p~~~~~~~~php~~g~vw~~~-~~~~~~~~~ig~~~v~v~d~~~wkvv~~I------~~~G~g-lFi~thP~s~ 281 (369)
T PF02239_consen 212 T--GKKPHPGPGANFPHPGFGPVWATS-GLGYFAIPLIGTDPVSVHDDYAWKVVKTI------PTQGGG-LFIKTHPDSR 281 (369)
T ss_dssp ---SSSBEETTEEEEEETTTEEEEEEE-BSSSSEEEEEE--TTT-STTTBTSEEEEE------E-SSSS---EE--TT-S
T ss_pred c--cccccccccccccCCCcceEEeec-cccceecccccCCccccchhhcCeEEEEE------ECCCCc-ceeecCCCCc
Confidence 0 012233333322 12221 12333333333446678999999998887 333444 5778899999
Q ss_pred EEEEE----CC-c--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCC-eEEEEeC
Q 001416 328 ILTCV----KD-S--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG-VIISEFD 399 (1081)
Q Consensus 328 lls~s----~D-~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG-~Il~iwd 399 (1081)
++-.. .+ . .|+|.++. ....++......++..+.|+++|..+.++..+.+ .| .++|
T Consensus 282 ~vwvd~~~~~~~~~v~viD~~tl---------------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i-~v~D 345 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVIDKKTL---------------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI-VVYD 345 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEECCGT---------------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE-EEEE
T ss_pred cEEeeccCCCCCceEEEEECcCc---------------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE-EEEE
Confidence 77433 33 2 46776642 1112222222226899999999888777666666 75 7999
Q ss_pred CCCCCCCcccC
Q 001416 400 PRSLPAVAPLP 410 (1081)
Q Consensus 400 ~~~~~~~~~~~ 410 (1081)
..+.+....++
T Consensus 346 ~~Tl~~~~~i~ 356 (369)
T PF02239_consen 346 AKTLKEKKRIP 356 (369)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 99887777766
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=3.7e-09 Score=113.61 Aligned_cols=254 Identities=13% Similarity=0.112 Sum_probs=171.5
Q ss_pred CCCceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEEec---CCc--cceEEe-ccCCCeEEEeecCCCCCceee
Q 001416 10 TNDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKA---GGV--DQRRLV-GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 10 H~~~V~~lafsp~g~--~Lasgs~dg~I~IWd~~t~~~i~~~~~---~~~--~~v~~v-s~~~~~lasg~~d~~~~~~~~ 81 (1081)
...+|++++|.-+++ .+...+.|..+...+++...+...... .+. ..+... -.++..+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Lit------------- 120 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLIT------------- 120 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEE-------------
Confidence 446788888876654 555555777777777766655444310 000 000000 11111111
Q ss_pred ecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecC--cEE-EEEecCCCccccc
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KAI-FLDLVTMRGRDIP 158 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d--~~i-~wd~~t~~~~~~~ 158 (1081)
|..+|.+.+|....+......+..... ...+..+.-++..+.++++|+.. ..+ +||+++.+ ++.
T Consensus 121 ---------c~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw 187 (412)
T KOG3881|consen 121 ---------CVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIW 187 (412)
T ss_pred ---------EecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeecccce--eee
Confidence 125888999988755422111222222 24456666777777788878876 333 69998752 221
Q ss_pred ccc---------cCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCC-eEEEEEecccccceEEEEEeeeCCCCC
Q 001416 159 KQE---------LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1081)
Q Consensus 159 ~~~---------~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~-~~~~~~~~~h~~~V~~l~w~~~s~d~~ 228 (1081)
... .-.-.++.+.|.|. .....|++++.-+.+++||.+.+ +++.+|. --..+++++. ..|+++
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g---~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~---l~p~gn 260 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEG---SPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTG---LTPSGN 260 (412)
T ss_pred eccCCCCccccceeeeeeccceecCC---CCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeee---ecCCCc
Confidence 111 11235778899652 12567999999999999999865 6777776 5678899998 689999
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEe
Q 001416 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1081)
Q Consensus 229 ~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~ 304 (1081)
++++|..-+.+..||+++++.... .+++..+.|.++..+| ..++++++|-|+.|||+|+++.+.+...
T Consensus 261 ~Iy~gn~~g~l~~FD~r~~kl~g~-----~~kg~tGsirsih~hp---~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 261 FIYTGNTKGQLAKFDLRGGKLLGC-----GLKGITGSIRSIHCHP---THPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred EEEEecccchhheecccCceeecc-----ccCCccCCcceEEEcC---CCceEEeeccceeEEEeecccchhhhhh
Confidence 999999999999999999875432 3688889999999999 8999999999999999999997766543
No 255
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=99.12 E-value=8e-13 Score=147.27 Aligned_cols=223 Identities=9% Similarity=-0.068 Sum_probs=137.7
Q ss_pred CccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc----------
Q 001416 666 PQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG---------- 729 (1081)
Q Consensus 666 ~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~---------- 729 (1081)
.+++|.+...... ....+..|++.+.-.+|.|++.+. ....++++|||+. |+|.+.+......
T Consensus 37 ~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~ 115 (283)
T cd05048 37 SVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAH-GDLHEFLVRNSPHSDVGAESGDE 115 (283)
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCC-CcHHHHHHhcCCCcccccccccc
Confidence 3677766543211 111234466666777899988887 3468899999998 8888765432111
Q ss_pred -----eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccC
Q 001416 730 -----AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLR 803 (1081)
Q Consensus 730 -----~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~ 803 (1081)
+++.....+ +..+.+|+.|||...+ |+.+|++|++++....+|++|||+...-.............
T Consensus 116 ~~~~~l~~~~~~~~--------~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~ 187 (283)
T cd05048 116 TVKSSLDCSDFLHI--------AIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSL 187 (283)
T ss_pred cccCCCCHHHHHHH--------HHHHHHHHHHHHhCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCc
Confidence 111111112 4567889999999998 99999999999999999999999875421110000000000
Q ss_pred CcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeee
Q 001416 804 PPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGV 882 (1081)
Q Consensus 804 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~ 882 (1081)
.+. .|.|||..... ..+.+.||||+|++++|+++ |..|+.. .+.++.. . .+
T Consensus 188 ~~~--------~y~aPE~~~~~-----------~~~~~sDv~slG~il~el~~~g~~p~~~--~~~~~~~-----~--~i 239 (283)
T cd05048 188 LPV--------RWMPPEAILYG-----------KFTTESDIWSFGVVLWEIFSYGLQPYYG--FSNQEVI-----E--MI 239 (283)
T ss_pred ccc--------cccCHHHhccC-----------cCchhhhHHHHHHHHHHHHcCCCCCCCC--CCHHHHH-----H--HH
Confidence 011 27788865321 12345799999999999886 5555531 1110000 0 00
Q ss_pred ecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 883 ~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
... . .+.+...++....+++.+||..+|..||++..|.+.|++
T Consensus 240 ~~~--------------~--~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 240 RSR--------------Q--LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred HcC--------------C--cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 000 0 000112456677899999999999999999999999875
No 256
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.2e-13 Score=156.58 Aligned_cols=232 Identities=10% Similarity=0.034 Sum_probs=146.7
Q ss_pred CCCCccEEEEeeccccccCC-CCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE---
Q 001416 663 EAAPQNFQLYSWETFQPVGG-LLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH--- 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~-~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~--- 733 (1081)
+-..||||...-+.-.-.|. ...|+.-+...+|.|+|+|. -+-.|.|.||+.- |.|..-|.-..-..+-.
T Consensus 515 ~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~-GDL~eFLra~sP~a~~~~~g 593 (774)
T KOG1026|consen 515 DEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDH-GDLHEFLRARSPKADKLASG 593 (774)
T ss_pred cceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEeccc-ccHHHHHHhhCCccccccCC
Confidence 45668888765544432333 55677789999999999999 5678999999987 88875544321111111
Q ss_pred e--eeeeEeccCce-EEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccC-Ccchh
Q 001416 734 R--RQLFVVTPTTI-ECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLR-PPMLQ 808 (1081)
Q Consensus 734 ~--~~~~~~t~~~i-~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~-~~~~~ 808 (1081)
. +.-+ ++..-+ -++-|+.||.||=.... |--|--.||+|....++||+||||..= .-..+-...+ ..++=
T Consensus 594 ~~~~~~L-~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRd----iYssDYYk~~~~t~lP 668 (774)
T KOG1026|consen 594 QDTPPPL-STSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRD----IYSSDYYKVRGNTLLP 668 (774)
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchh----hhhhhhhcccCCceee
Confidence 0 0000 000000 04578899999977666 999999999999999999999999741 1111100001 11111
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
| =|++||--.+.. -+.+.||||||+++.||++ |-.|+. .++-+| .+--++.+++
T Consensus 669 I-----RWMppEsIly~k-----------FTteSDVWs~GVvLWEIFsyG~QPy~--glSn~E-------VIe~i~~g~l 723 (774)
T KOG1026|consen 669 I-----RWMPPESILYGK-----------FTTESDVWSFGVVLWEIFSYGKQPYY--GLSNQE-------VIECIRAGQL 723 (774)
T ss_pred e-----ecCCHHHhhcCc-----------ccchhhhhhhhhhhhhhhccccCccc--ccchHH-------HHHHHHcCCc
Confidence 1 188888754422 2334799999999999964 223332 122111 0001223322
Q ss_pred EEEeccccccccCCCCcccce--ecccccccHHHHHhhhcccCcccHHHHHHHHHhcC
Q 001416 888 WLIDRYMCAHALSLSHPGIRC--RCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMG 943 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~ 943 (1081)
++| .|+...-++|..||.+.|..||.|..|.+.|++..
T Consensus 724 ------------------L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~ 763 (774)
T KOG1026|consen 724 ------------------LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWA 763 (774)
T ss_pred ------------------ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHH
Confidence 122 48888899999999999999999999999999763
No 257
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=99.11 E-value=1.4e-12 Score=159.78 Aligned_cols=220 Identities=10% Similarity=-0.015 Sum_probs=142.8
Q ss_pred ccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc------ccceeeEe
Q 001416 667 QNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY------ATGAVWHR 734 (1081)
Q Consensus 667 ~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~------~~~~~w~~ 734 (1081)
++||....-+ .+-+...+.|...|.--+|+|+++++ .....||+||=.. |.|...+.+. ...|.-.+
T Consensus 725 vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~g-GDL~sflr~~r~~~~~~~~L~~~d 803 (1025)
T KOG1095|consen 725 VAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEG-GDLLSFLRESRPAPFQPSNLSMRD 803 (1025)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhccc-CcHHHHHHhcccccCCCCCCCHHH
Confidence 4555433321 22233356677789999999999999 6688999999888 8888766653 22222222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeee-ecccchhhhcccccCCcchhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIA-VESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
=..| +.||++||.||+.-.. |-.|--.||++|.|.++||+||||-. ....+-...+ ..-+-|.=
T Consensus 804 Ll~~--------a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~-~~a~lPvk----- 869 (1025)
T KOG1095|consen 804 LLAF--------ALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKH-GEAMLPVK----- 869 (1025)
T ss_pred HHHH--------HHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheecc-Ccccccee-----
Confidence 2234 6699999999999777 99999999999999999999999976 1111100000 00011222
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcc-eeeecCCCCCCCCCCCCcEEeee-ecCeEEEE
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGV-AVAVTRFPTEQKRPIGPLVVVGV-KDGVLWLI 890 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~ 890 (1081)
|+|||.+..- .=+.+.||||||+.+.|++++|. ||. +.+..+ .+.-+ .++
T Consensus 870 ---Wm~PEsl~d~-----------iFtskSDvWsFGVllWEifslG~~PY~--~~~n~~-------v~~~~~~gg----- 921 (1025)
T KOG1095|consen 870 ---WMPPESLKDG-----------IFTSKSDVWSFGVLLWEIFSLGATPYP--SRSNFE-------VLLDVLEGG----- 921 (1025)
T ss_pred ---cCCHHHHhhc-----------ccccccchhhhHHHHHHHHhCCCCCCC--CcchHH-------HHHHHHhCC-----
Confidence 9999987531 12345799999999999987765 443 111000 00001 122
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
.|..| .-|+...-++|+.||...|+.||+|..|-+.+..
T Consensus 922 ---------RL~~P---~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~ 960 (1025)
T KOG1095|consen 922 ---------RLDPP---SYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPA 960 (1025)
T ss_pred ---------ccCCC---CCCChHHHHHHHHHccCChhhCccHHHHHhhhhh
Confidence 11111 1366666699999999999999999998775543
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=3.6e-09 Score=113.68 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=152.3
Q ss_pred eCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEecCCccceEEe---ccCCCeEEEeecCCCCCce
Q 001416 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ----VIYELKAGGVDQRRLV---GAKLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 7 l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~----~i~~~~~~~~~~v~~v---s~~~~~lasg~~d~~~~~~ 79 (1081)
..+.+..|..++.. ..+|++|-.+|.+++|..+.+- .+..+..+ .++..+ ...-..+|+|+.+
T Consensus 101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke------ 170 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKE------ 170 (412)
T ss_pred cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchh------
Confidence 34445566666555 4589999999999999988443 12222222 222222 2223333444311
Q ss_pred eeecCCceEEEEEeCCeEEEEEcCCCccccc----cccccccCCCCCeeecccCCC--CCeEEEEEec-CcEEEEEecCC
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAA----EAPTAVSNVTSGFASPPPSTK--GRHFLVICCV-NKAIFLDLVTM 152 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~----~~~~~~~h~~~~V~sl~fsp~--g~~~l~s~s~-d~~i~wd~~t~ 152 (1081)
.-..+++||+...+.... ....+.-...-+++++.|-+. .. .|+++.. +.+.+||...+
T Consensus 171 -------------~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 171 -------------NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred -------------cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCccc
Confidence 126678888877642111 011111122346778888776 44 4555555 44556999866
Q ss_pred CcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEE
Q 001416 153 RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1081)
Q Consensus 153 ~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~s 232 (1081)
+ +++..+.....+++++.. .|+++++++|..-|.+..+|.+.++.......+-.+.+.++. .+|...++++
T Consensus 237 R-RPV~~fd~~E~~is~~~l-----~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih---~hp~~~~las 307 (412)
T KOG3881|consen 237 R-RPVAQFDFLENPISSTGL-----TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH---CHPTHPVLAS 307 (412)
T ss_pred C-cceeEeccccCcceeeee-----cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE---EcCCCceEEe
Confidence 4 677777788889999999 689999999999999999999999988885459999999997 6899999999
Q ss_pred EeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 233 gs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
+|.|+.|||+|+.+.+.+... -++ ...+++-+.+
T Consensus 308 ~GLDRyvRIhD~ktrkll~kv----YvK---s~lt~il~~~ 341 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKTRKLLHKV----YVK---SRLTFILLRD 341 (412)
T ss_pred eccceeEEEeecccchhhhhh----hhh---ccccEEEecC
Confidence 999999999999997655431 122 3456666654
No 259
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=99.10 E-value=1.3e-12 Score=144.06 Aligned_cols=228 Identities=10% Similarity=-0.044 Sum_probs=143.2
Q ss_pred CCCccEEEEeecc---ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc---cceee
Q 001416 664 AAPQNFQLYSWET---FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA---TGAVW 732 (1081)
Q Consensus 664 ~~~~~i~~~~~~~---~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~---~~~~w 732 (1081)
|+.++||.+.... .+.......|++.++-.+|.|++.+. ....+++++|++. |+|.+++.... ..+..
T Consensus 27 ~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~~ 105 (267)
T cd08228 27 RKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADA-GDLSQMIKYFKKQKRLIPE 105 (267)
T ss_pred CCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCC-CcHHHHHHHhhhccCCCCH
Confidence 4557887654321 12122234466666777899998888 4578999999998 88876653211 01111
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..+.+|+.|||...+ |+.++++|++++....++++|||+...-........ ......
T Consensus 106 ~~~~~~--------~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~--~~~~~~----- 170 (267)
T cd08228 106 RTVWKY--------FVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH--SLVGTP----- 170 (267)
T ss_pred HHHHHH--------HHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHh--cCCCCc-----
Confidence 111122 4578889999999998 999999999999999999999998765322111110 011112
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEe
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
.|.|||..... ....+.|+||+|++++++++|+.|+.....+...... .+...
T Consensus 171 ---~~~aPE~~~~~-----------~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~-------~~~~~------ 223 (267)
T cd08228 171 ---YYMSPERIHEN-----------GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQ-------KIEQC------ 223 (267)
T ss_pred ---cccChhhhccC-----------CCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHH-------HHhcC------
Confidence 27788875321 1234479999999999999988887422221000000 00000
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhcC
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMG 943 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~ 943 (1081)
. .++...........+++.+||..+|..||.+..|.++|+.|+
T Consensus 224 -----~----~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~ 266 (267)
T cd08228 224 -----D----YPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH 266 (267)
T ss_pred -----C----CCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence 0 001111123445679999999999999999999999999874
No 260
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=99.09 E-value=1.5e-12 Score=142.82 Aligned_cols=218 Identities=10% Similarity=0.025 Sum_probs=136.5
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|.+...... ...+..|++.++-.+|.|++.+. ....++|++||+. |+|.+.+......+.|.....+
T Consensus 31 ~a~K~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~--- 105 (256)
T cd05114 31 VAIKAINEGAMS-EEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN-GCLLNYLRQRQGKLSKDMLLSM--- 105 (256)
T ss_pred EEEEecccCCcc-HHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC-CcHHHHHHhCccCCCHHHHHHH---
Confidence 677765433221 12344566777778899999977 4468999999998 8888766432223444433333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+.+++.|+.|||...+ |+.++++|++++....+|++|||+............ .....+.. +.|||
T Consensus 106 -----~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~--------y~aPE 171 (256)
T cd05114 106 -----CQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSS-SGAKFPVK--------WSPPE 171 (256)
T ss_pred -----HHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceecc-CCCCCchh--------hCChh
Confidence 5678899999999998 999999999999999999999997754221111000 00011112 66777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
..... ..+.+.||||||++++++++ |..|+...... + ....+..+ .
T Consensus 172 ~~~~~-----------~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~--~-------~~~~i~~~-------------~ 218 (256)
T cd05114 172 VFNFS-----------KYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNY--E-------VVEMISRG-------------F 218 (256)
T ss_pred hcccC-----------ccchhhhhHHHHHHHHHHHcCCCCCCCCCCHH--H-------HHHHHHCC-------------C
Confidence 75321 12335799999999999987 55555321110 0 00000000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
+...+. .......+++..||..+|..||.+..|.+.|
T Consensus 219 ~~~~~~---~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 219 RLYRPK---LASMTVYEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred CCCCCC---CCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 000000 1123456999999999999999999997765
No 261
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=99.09 E-value=1.6e-12 Score=151.65 Aligned_cols=151 Identities=9% Similarity=-0.034 Sum_probs=95.7
Q ss_pred eeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCC
Q 001416 749 FVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTM 827 (1081)
Q Consensus 749 ~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 827 (1081)
.+++|+.|||...+ |+.+|++|++++....+|++|||+..................+.. |.|||+...
T Consensus 245 qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~--- 313 (400)
T cd05105 245 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK--------WMAPESIFD--- 313 (400)
T ss_pred HHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcc--------eEChhhhcC---
Confidence 46789999999888 999999999999999999999998764221111000000001111 678886521
Q ss_pred CccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCccc
Q 001416 828 PKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGI 906 (1081)
Q Consensus 828 ~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~ 906 (1081)
...+.+.||||||++++|+++ |+.|+.....+ ...+. .+..+ ..+. .
T Consensus 314 --------~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~-------~~~~~-~~~~~-------------~~~~---~ 361 (400)
T cd05105 314 --------NLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVD-------STFYN-KIKSG-------------YRMA---K 361 (400)
T ss_pred --------CCCCchhhHHHHHHHHHHHHHCCCCCCcccchh-------HHHHH-HHhcC-------------CCCC---C
Confidence 112345799999999999875 66665421111 00000 00000 0000 0
Q ss_pred ceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 907 RCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...+.....+++..||..+|..||++..|.+.|+++
T Consensus 362 ~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l 397 (400)
T cd05105 362 PDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESL 397 (400)
T ss_pred CccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHH
Confidence 113455677999999999999999999999998864
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.07 E-value=8.9e-09 Score=124.21 Aligned_cols=270 Identities=14% Similarity=0.169 Sum_probs=170.9
Q ss_pred EECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccc-cccc
Q 001416 38 WNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAA-EAPT 114 (1081)
Q Consensus 38 Wd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~-~~~~ 114 (1081)
|+. .|..+..+..|........ ++.+.++++|+ .||+||+|+...-..... ....
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS---------------------~DGtVKvW~~~k~~~~~~s~rS~ 1091 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGS---------------------DDGTVKVWNLRKLEGEGGSARSE 1091 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEec---------------------CCceEEEeeehhhhcCcceeeee
Confidence 664 4777777776554433333 56667888875 599999999875432210 1111
Q ss_pred cccC-CCCCeeecccCCCCCeEEEEEecCcEEE-EEecC--CCc-----ccccccccCCCCeeEEEEeeccccCCCC-EE
Q 001416 115 AVSN-VTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVT--MRG-----RDIPKQELDNKSLVCMEFLSRSAVGDVP-LV 184 (1081)
Q Consensus 115 ~~~h-~~~~V~sl~fsp~g~~~l~s~s~d~~i~-wd~~t--~~~-----~~~~~~~~~~~~I~~ia~~p~~~sp~~~-~l 184 (1081)
..-+ ....+..+.+.+.+.. ++++++|+.+. .++.. .+. ..++.....+..+.+-+|. ...+. .+
T Consensus 1092 ltys~~~sr~~~vt~~~~~~~-~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~----~~~~S~~l 1166 (1431)
T KOG1240|consen 1092 LTYSPEGSRVEKVTMCGNGDQ-FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT----AIVQSHVL 1166 (1431)
T ss_pred EEEeccCCceEEEEeccCCCe-EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc----ccccceeE
Confidence 1122 3667888888888874 55556666664 44443 111 1122223334455555663 23344 78
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEe-cccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccC
Q 001416 185 AFGSSDGVIRVLSMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1081)
Q Consensus 185 ~sgs~Dg~I~lwd~~~~~~~~~~~-~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~ 263 (1081)
+.+...+.|..||.++.....+++ ....+.|++++ .+|.+.+++.|+..|.+.+||++-+..+..|. .++.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~---idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-----~P~~ 1238 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV---IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-----HPAR 1238 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhhhcCccccceeEEE---ecCCceEEEEecCCceEEEEEeecCceeeccc-----Cccc
Confidence 889999999999998654443332 13457899998 69999999999999999999999988766652 3455
Q ss_pred CcEEEEEEeeecCCCCEEEEEEC--CCeEEEEECCCCceeeEecCC---Ccc----c------cC-CCCeEEEeecCCCC
Q 001416 264 GGVVAVELSRVMGGSPQLITIGA--DKTLAIWDTVSFKELRRIKPV---PKL----A------CH-SVASWCHPRAPNLD 327 (1081)
Q Consensus 264 ~~V~~v~fsp~~~~~~~Lvsgs~--Dg~V~iWDl~t~~~~~~~~~~---~~~----~------~h-~~~v~~v~~spd~~ 327 (1081)
.+++.+..+|..+.....++++. .+.|.+|++.+|.+.+.+... ..+ . .+ ...+.|..-.+.+-
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~ 1318 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGF 1318 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCce
Confidence 78888888885443356666554 788999999999877766322 000 0 01 11233444444555
Q ss_pred EEEEECCc--eEEEecc
Q 001416 328 ILTCVKDS--HIWAIEH 342 (1081)
Q Consensus 328 lls~s~D~--~IWdi~~ 342 (1081)
+++++.|. |.||...
T Consensus 1319 ~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1319 LLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred eeecCCccceeeccCCC
Confidence 67888885 5688775
No 263
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=99.07 E-value=2.5e-12 Score=141.09 Aligned_cols=224 Identities=10% Similarity=-0.023 Sum_probs=144.3
Q ss_pred CccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 666 PQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 666 ~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
.+++|.+.-.... ...++..|++.+...+|.|++.+. ....++|++||+. |+|.+.+.+.. .+.+.....+
T Consensus 25 ~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~-~~L~~~l~~~~-~~~~~~~~~~-- 100 (257)
T cd05060 25 EVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPL-GPLLKYLKKRR-EIPVSDLKEL-- 100 (257)
T ss_pred eEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCC-CcHHHHHHhCC-CCCHHHHHHH--
Confidence 3677776655442 222355567777888999999987 4567899999998 89988775422 3444443444
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCC
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAA 819 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 819 (1081)
+..++.|+.|||...+ ||.++++|++++.+..+|++|||+...-...... +....-. +...-|.||
T Consensus 101 ------~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~-----~~~~~~~--~~~~~y~aP 167 (257)
T cd05060 101 ------AHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY-----YRATTAG--RWPLKWYAP 167 (257)
T ss_pred ------HHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcc-----cccccCc--cccccccCH
Confidence 5678889999999999 9999999999999999999999987532111100 0000000 000116677
Q ss_pred CCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 820 SVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
|.... ...+.+.||||+|++++++++ |..|+... +..+.. ......
T Consensus 168 E~~~~-----------~~~~~~~Di~slG~~l~~~~~~g~~p~~~~--~~~~~~-------~~~~~~------------- 214 (257)
T cd05060 168 ECINY-----------GKFSSKSDVWSYGVTLWEAFSYGAKPYGEM--KGAEVI-------AMLESG------------- 214 (257)
T ss_pred HHhcC-----------CCCCccchHHHHHHHHHHHHcCCCCCcccC--CHHHHH-------HHHHcC-------------
Confidence 76531 113345799999999999986 66666421 100000 000000
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++. ....+.....+++.+|+..+|..||+...|.+.|++.
T Consensus 215 ~~~~---~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 215 ERLP---RPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred CcCC---CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 0000 0112445667999999999999999999999998764
No 264
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.2e-08 Score=118.14 Aligned_cols=172 Identities=14% Similarity=0.042 Sum_probs=110.1
Q ss_pred eeecccCCCCCeEEEEEecC---cEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECC-CeEEE--E
Q 001416 123 FASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRV--L 196 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d---~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D-g~I~l--w 196 (1081)
+....|+|||+.++++.+.+ .+.+||..+++...+ ..+...+....| +|+|+.|+..+++ +...+ +
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l---t~~~~~~~~~~w-----SPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---TDGRSNNTEPTW-----FPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc---cCCCCCcCceEE-----CCCCCEEEEEeCCCCCceEEEE
Confidence 34578999999776665433 255689887654332 223346678899 7899998877764 44444 4
Q ss_pred EcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCC---CcEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 197 d~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~D---g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
|+.+++.. .+. .+.....+.. ++|+|+.++..+.+ ..|.+||+.++.... +... .......|+|
T Consensus 317 d~~~g~~~-~lt-~~~~~~~~~~---~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-------Lt~~-~~~~~p~~Sp 383 (429)
T PRK03629 317 NINGGAPQ-RIT-WEGSQNQDAD---VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-------LTDT-FLDETPSIAP 383 (429)
T ss_pred ECCCCCeE-Eee-cCCCCccCEE---ECCCCCEEEEEEccCCCceEEEEECCCCCeEE-------eCCC-CCCCCceECC
Confidence 66665443 333 2334445565 48999998877654 358889998775221 2211 1234578999
Q ss_pred ecCCCCEEEEEECCCe---EEEEECCCCceeeEecCCCccccCCCCeEEEeecCC
Q 001416 274 VMGGSPQLITIGADKT---LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1081)
Q Consensus 274 ~~~~~~~Lvsgs~Dg~---V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd 325 (1081)
|+.+|+.++.++. +.++++. ++..+.+ ..|...+...+|+|-
T Consensus 384 ---DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l------~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 ---NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL------PATDGQVKFPAWSPY 428 (429)
T ss_pred ---CCCEEEEEEcCCCceEEEEEECC-CCCeEEC------ccCCCCcCCcccCCC
Confidence 9999999888764 6777774 4444443 567777777888873
No 265
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=1.2e-08 Score=106.32 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=107.9
Q ss_pred eecccCCCCCeEEEEEecC----------cEEEEEecCCCccccccccc-CCCCeeEEEEeeccccCCCCEEEEE--ECC
Q 001416 124 ASPPPSTKGRHFLVICCVN----------KAIFLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFG--SSD 190 (1081)
Q Consensus 124 ~sl~fsp~g~~~l~s~s~d----------~~i~wd~~t~~~~~~~~~~~-~~~~I~~ia~~p~~~sp~~~~l~sg--s~D 190 (1081)
..+.|+|+|+.+++....+ ..-+|.++... ........ ...+|.+++| +|++..+++. ..+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~W-----sP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAW-----SPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEE-----CcCCCEEEEEEccCC
Confidence 3567899998777666521 11233332221 22333333 3357999999 7889886554 466
Q ss_pred CeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCC---CcEEEEEcCCCCcccccccceeecccCCcEE
Q 001416 191 GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVV 267 (1081)
Q Consensus 191 g~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~D---g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~ 267 (1081)
+.|.+||.+ ++.+..+. ...++.+.| +|+|++|++|+.+ |.|.+||.++.+.+.. ..| ..++
T Consensus 83 ~~v~lyd~~-~~~i~~~~---~~~~n~i~w---sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-------~~~-~~~t 147 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG---TQPRNTISW---SPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-------FEH-SDAT 147 (194)
T ss_pred cccEEEcCc-ccEeEeec---CCCceEEEE---CCCCCEEEEEEccCCCcEEEEEECCCCEEeec-------ccc-CcEE
Confidence 799999997 66666653 466778884 9999999998754 6799999997664432 223 3478
Q ss_pred EEEEeeecCCCCEEEEEEC------CCeEEEEECCCCceeeEe
Q 001416 268 AVELSRVMGGSPQLITIGA------DKTLAIWDTVSFKELRRI 304 (1081)
Q Consensus 268 ~v~fsp~~~~~~~Lvsgs~------Dg~V~iWDl~t~~~~~~~ 304 (1081)
.++|+| +|++|+++.. |+.++||++. |+.+.+.
T Consensus 148 ~~~WsP---dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 148 DVEWSP---DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEcC---CCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 999999 9999998874 7899999985 6655543
No 266
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=99.06 E-value=1.8e-12 Score=142.61 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=142.1
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~~ 737 (1081)
++.+++|.+......-...+..|+..++-.+|.|++.+. ....++|+|||+. |+|.+.+.+.. ..+.|.....
T Consensus 30 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~ 108 (261)
T cd05148 30 RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEK-GSLLAFLRSPEGQVLPVASLID 108 (261)
T ss_pred CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeeccc-CCHHHHHhcCCCCCCCHHHHHH
Confidence 445788887665543333455566667777899988877 4567899999999 89887765421 2233333233
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ |+.++++|++++..+.+|++|||+...-........ ....+.. |
T Consensus 109 ~--------~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~--~~~~~~~--------~ 170 (261)
T cd05148 109 M--------ACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSS--DKKIPYK--------W 170 (261)
T ss_pred H--------HHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCcccccc--CCCCceE--------e
Confidence 3 4577889999999888 999999999999999999999998753211100000 0001111 5
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
++||.... ...+.+.||||+|++++++++ |..|+.. .+..+ .+.. ...+
T Consensus 171 ~~PE~~~~-----------~~~~~~~DiwslG~~l~~l~~~g~~p~~~--~~~~~------~~~~-~~~~---------- 220 (261)
T cd05148 171 TAPEAASH-----------GTFSTKSDVWSFGILLYEMFTYGQVPYPG--MNNHE------VYDQ-ITAG---------- 220 (261)
T ss_pred cCHHHHcc-----------CCCCchhhHHHHHHHHHHHHcCCCCCCCc--CCHHH------HHHH-HHhC----------
Confidence 66665421 112345799999999999887 4445531 11000 0000 0000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+... ....+.....+++..||..+|..||.+..|.+.|+.
T Consensus 221 ---~~~~---~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 221 ---YRMP---CPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred ---CcCC---CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 0000 012445566799999999999999999999999875
No 267
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=99.05 E-value=2.1e-12 Score=142.76 Aligned_cols=216 Identities=11% Similarity=0.039 Sum_probs=129.3
Q ss_pred CCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc----ccceeeEeeeeeEeccCceEEEeeeCC
Q 001416 683 LLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY----ATGAVWHRRQLFVVTPTTIECVFVDAG 753 (1081)
Q Consensus 683 ~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~----~~~~~w~~~~~~~~t~~~i~~~~~~~g 753 (1081)
+..|+..++-.+|.|++.+. ....++|+|||+. |+|.+.+... ....++.....+ +..+++|
T Consensus 42 ~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~~~~~~--------~~qi~~a 112 (269)
T cd05087 42 FLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPL-GDLKGYLRSCRKAELMTPDPTTLQRM--------ACEIALG 112 (269)
T ss_pred HHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCC-CcHHHHHHHhhhcccccccHHHHHHH--------HHHHHHH
Confidence 33455566667899999887 3567899999998 9998776531 111222211122 4578899
Q ss_pred ccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCcccc
Q 001416 754 VAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTK 832 (1081)
Q Consensus 754 m~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 832 (1081)
+.|||...+ |+.+|+.|++++....+|++|||+..................+.. |.|||+.........
T Consensus 113 l~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~~~~~~~-- 182 (269)
T cd05087 113 LLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLR--------WIAPELVDEVHGNLL-- 182 (269)
T ss_pred HHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCccc--------ccCHhHhcccccccc--
Confidence 999999888 999999999999999999999998653221110000000011111 678887642111100
Q ss_pred ccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecc
Q 001416 833 VEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCL 911 (1081)
Q Consensus 833 ~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~ 911 (1081)
.-..+.+.|+||||++++|+++ |..|+... ..++... + .+... ...+..+.+.....
T Consensus 183 --~~~~~~~~DiwslG~~l~el~~~g~~p~~~~--~~~~~~~----~--~~~~~------------~~~~~~~~~~~~~~ 240 (269)
T cd05087 183 --VVDQTKESNVWSLGVTIWELFELGSQPYRHL--SDEQVLT----Y--TVREQ------------QLKLPKPRLKLPLS 240 (269)
T ss_pred --ccCCCccchhHHHHHHHHHHHhCCCCCCCCC--ChHHHHH----H--Hhhcc------------cCCCCCCccCCCCC
Confidence 0012345799999999999875 66566421 1111000 0 00000 01111122222233
Q ss_pred cccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 912 AAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 912 ~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
....++++.|| .+|..||.++.|.+.|.
T Consensus 241 ~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~ 268 (269)
T cd05087 241 DRWYEVMQFCW-LQPEQRPSAEEVHLLLS 268 (269)
T ss_pred hHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence 45567999998 57999999999988763
No 268
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=99.05 E-value=2.5e-12 Score=142.21 Aligned_cols=223 Identities=10% Similarity=0.000 Sum_probs=145.3
Q ss_pred CccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 666 PQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 666 ~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
.++||.+.... .+...++..|+..++-.+|.|++.+. .+..++|+|||+. |+|.+.+......++|.....+
T Consensus 36 ~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~-- 112 (270)
T cd05056 36 AVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPL-GELRSYLQVNKYSLDLASLILY-- 112 (270)
T ss_pred ceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCCC-CcHHHHHHhCCCCCCHHHHHHH--
Confidence 36888876554 22223344466666667889999887 4567899999998 8998877653334555544444
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCC
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAA 819 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 819 (1081)
+.++..|+.|||...+ ||.++.+|++++..-.+|++|||+............. ....+.. +.||
T Consensus 113 ------~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~-~~~~~~~--------y~aP 177 (270)
T cd05056 113 ------SYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKAS-KGKLPIK--------WMAP 177 (270)
T ss_pred ------HHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccceecC-CCCcccc--------ccCh
Confidence 6688999999999888 9999999999999999999999987653221111000 0011111 5677
Q ss_pred CCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 820 SVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
|..... ..+.+.||||+|+++++++. |..|+...... +.. ...... ..
T Consensus 178 E~~~~~-----------~~~~~~Di~slG~il~el~~~g~~pf~~~~~~-~~~--------~~~~~~-----------~~ 226 (270)
T cd05056 178 ESINFR-----------RFTSASDVWMFGVCMWEILMLGVKPFQGVKNN-DVI--------GRIENG-----------ER 226 (270)
T ss_pred hhhccC-----------CCCchhhhHHHHHHHHHHHHcCCCCCCCCCHH-HHH--------HHHHcC-----------Cc
Confidence 764221 12345799999999998764 65565321110 000 000000 00
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.+ +...++....+++..|+..+|..||+...+...|+..
T Consensus 227 ~~-----~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~ 265 (270)
T cd05056 227 LP-----MPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDI 265 (270)
T ss_pred CC-----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 00 1124566788999999999999999999999888765
No 269
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=99.05 E-value=2.7e-12 Score=149.73 Aligned_cols=151 Identities=8% Similarity=-0.039 Sum_probs=95.3
Q ss_pred eeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCC
Q 001416 749 FVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTM 827 (1081)
Q Consensus 749 ~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 827 (1081)
.+++|+.|||...+ |+.+|++|++++....+|++|||+...-..............+.. |.|||.....
T Consensus 247 qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~~-- 316 (401)
T cd05107 247 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLK--------WMAPESIFNN-- 316 (401)
T ss_pred HHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCc--------eeChHHhcCC--
Confidence 57789999999888 999999999999999999999998764211110000000011111 6677765321
Q ss_pred CccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCccc
Q 001416 828 PKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGI 906 (1081)
Q Consensus 828 ~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~ 906 (1081)
..+.+.||||||++++|+.. |+.|+...... +. .+.. +..+ .++. .
T Consensus 317 ---------~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~--~~-----~~~~-~~~~-------------~~~~---~ 363 (401)
T cd05107 317 ---------LYTTLSDVWSFGILLWEIFTLGGTPYPELPMN--EQ-----FYNA-IKRG-------------YRMA---K 363 (401)
T ss_pred ---------CCCcHhHHHHHHHHHHHHHHcCCCCCCCCCch--HH-----HHHH-HHcC-------------CCCC---C
Confidence 12345799999999999886 55555321110 00 0000 0000 0010 1
Q ss_pred ceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 907 RCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...+.....+++..||..+|..||.+..|.+.|+++
T Consensus 364 p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~ 399 (401)
T cd05107 364 PAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL 399 (401)
T ss_pred CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 113455677999999999999999999999998864
No 270
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=99.05 E-value=2e-12 Score=147.73 Aligned_cols=166 Identities=9% Similarity=-0.079 Sum_probs=114.4
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.++.+.. ....++..|++.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.+.....
T Consensus 30 ~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~~~~~ 107 (331)
T cd06649 30 GLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG-GSLDQVLKEA-KRIPEEILGK 107 (331)
T ss_pred CcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCC-CcHHHHHHHc-CCCCHHHHHH
Confidence 45578888775422 2233466677788888999999987 4578999999998 9998876541 1222222222
Q ss_pred eEeccCceEEEeeeCCccccchh-hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVE-TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s-~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
+ +..++.|+.|||.. .+ |+.+|++|++++....+|++|||+...-..... .... -...
T Consensus 108 ~--------~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~----~~~~--------g~~~ 167 (331)
T cd06649 108 V--------SIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA----NSFV--------GTRS 167 (331)
T ss_pred H--------HHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccccccccc----ccCC--------CCcC
Confidence 2 44678899999985 35 999999999999999999999998643211100 0001 1123
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||+... ...+.+.||||+|++++|+++|..|+.
T Consensus 168 y~aPE~~~~-----------~~~~~~~DiwslG~il~el~tg~~p~~ 203 (331)
T cd06649 168 YMSPERLQG-----------THYSVQSDIWSMGLSLVELAIGRYPIP 203 (331)
T ss_pred cCCHhHhcC-----------CCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 778887632 112345799999999999999988874
No 271
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.05 E-value=6e-08 Score=101.93 Aligned_cols=180 Identities=17% Similarity=0.290 Sum_probs=120.0
Q ss_pred cEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEEEEcCCCcccccccc
Q 001416 34 HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAP 113 (1081)
Q Consensus 34 ~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~ 113 (1081)
.|.|||=....++.++... ..+..+--....|+. ..++.|.+|.+.++-...-...
T Consensus 76 kviIWDD~k~~~i~el~f~--~~I~~V~l~r~riVv----------------------vl~~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSFN--SEIKAVKLRRDRIVV----------------------VLENKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred eEEEEecccCcEEEEEEec--cceeeEEEcCCeEEE----------------------EecCeEEEEEcCCChhheeeee
Confidence 7999997777888887743 122222112222222 1578889999875432111111
Q ss_pred ccccCCCCCeeecccCCCCCeEEEEEe-c-CcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCC
Q 001416 114 TAVSNVTSGFASPPPSTKGRHFLVICC-V-NKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1081)
Q Consensus 114 ~~~~h~~~~V~sl~fsp~g~~~l~s~s-~-d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg 191 (1081)
+.... ....+++-+.+. .+++.-+ . +.+.+.|+...+........+|...|.|++. +-+|..+||+|..|
T Consensus 132 t~~NP--kGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~L-----n~~Gt~vATaStkG 203 (346)
T KOG2111|consen 132 TRSNP--KGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVAL-----NLQGTLVATASTKG 203 (346)
T ss_pred cccCC--CceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEE-----cCCccEEEEeccCc
Confidence 11111 123444443333 3444433 2 3344567765433233557899999999999 78999999999999
Q ss_pred e-EEEEEcCCCeEEEEEecc-cccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 001416 192 V-IRVLSMISWKLVRRYTGG-HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1081)
Q Consensus 192 ~-I~lwd~~~~~~~~~~~~~-h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~ 248 (1081)
+ |||||..+|..+..+..| ....|.|++ |+|+..+|+.+|..||++|+.++...
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~ia---FSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIA---FSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEE---eCCCccEEEEEcCCCeEEEEEeecCC
Confidence 7 899999999999998755 456799998 79999999999999999999987644
No 272
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=99.04 E-value=3.6e-12 Score=140.45 Aligned_cols=222 Identities=9% Similarity=0.034 Sum_probs=139.6
Q ss_pred CccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEeeeeeE
Q 001416 666 PQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQLFV 739 (1081)
Q Consensus 666 ~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~~~ 739 (1081)
.+++|.+..+... ......|++.++-.+|.|++.+. .+..++|+||++. ++|.+.+... ...+.|.....+
T Consensus 33 ~~~~K~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~l~~~~~~~~- 109 (263)
T cd05052 33 TVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY-GNLLDYLRECNRQEVNAVVLLYM- 109 (263)
T ss_pred eEEEEEecCCchH-HHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCC-CcHHHHHHhCCCCCCCHHHHHHH-
Confidence 3677776543222 12344466666667899998887 4567899999998 8888765321 222444433333
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccC
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+..++.|+.|||...+ ||.++++|++++....+|++|||+............ .....+. -|.|
T Consensus 110 -------~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~-~~~~~~~--------~y~a 173 (263)
T cd05052 110 -------ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH-AGAKFPI--------KWTA 173 (263)
T ss_pred -------HHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccceeecc-CCCCCcc--------ccCC
Confidence 5678899999999888 999999999999999999999998764221111000 0000011 1667
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
||.... ...+.+.||||+|++++|+++ |..|+.-.... +.... .... .
T Consensus 174 PE~~~~-----------~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~--~~~~~-------~~~~-----------~ 222 (263)
T cd05052 174 PESLAY-----------NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYEL-------LEKG-----------Y 222 (263)
T ss_pred HHHhcc-----------CCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHH-------HHCC-----------C
Confidence 776432 112334799999999999987 55554311110 00000 0000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..+ ..-.++....++++.|+..+|..||.+..+.+.|+.+
T Consensus 223 ~~~-----~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 223 RME-----RPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred CCC-----CCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 000 0113456677899999999999999999999988753
No 273
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=99.04 E-value=2.8e-12 Score=142.71 Aligned_cols=223 Identities=9% Similarity=-0.051 Sum_probs=137.7
Q ss_pred CccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc------------
Q 001416 666 PQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT------------ 728 (1081)
Q Consensus 666 ~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~------------ 728 (1081)
.+++|.+...+......+..|++.++-.+|.|++.+. ....++++||++. |+|.+.+.+..-
T Consensus 37 ~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~~~~~ 115 (280)
T cd05092 37 LVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRH-GDLNRFLRSHGPDAKILAGGEDVA 115 (280)
T ss_pred EEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCC-CCHHHHHHhcCcchhhhcccccCC
Confidence 3666666544433333455566667777899998887 3568999999998 888876643211
Q ss_pred --ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCc
Q 001416 729 --GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPP 805 (1081)
Q Consensus 729 --~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~ 805 (1081)
.+.|.....+ +..+..|+.|||...+ |+.++++|++++..-.+|++|||+..................+
T Consensus 116 ~~~l~~~~~~~~--------~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~ 187 (280)
T cd05092 116 PGQLTLGQMLAI--------ASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLP 187 (280)
T ss_pred ccccCHHHHHHH--------HHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCcccc
Confidence 1222222222 4567789999999888 9999999999999999999999987532111000000000001
Q ss_pred chhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeec
Q 001416 806 MLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKD 884 (1081)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 884 (1081)
.. |.|||... +...+.+.||||||++++|+++ |..|+.. ....+ .. . ....
T Consensus 188 ~~--------y~aPE~~~-----------~~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~-----~~-~-~~~~ 239 (280)
T cd05092 188 IR--------WMPPESIL-----------YRKFTTESDIWSFGVVLWEIFTYGKQPWYQ--LSNTE-----AI-E-CITQ 239 (280)
T ss_pred cc--------ccCHHHhc-----------cCCcCchhhHHHHHHHHHHHHcCCCCCCcc--CCHHH-----HH-H-HHHc
Confidence 11 56777542 1123345799999999999887 4445431 11000 00 0 0000
Q ss_pred CeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 885 GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 885 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
. .++. ....++....+++..||..+|..||..+.|.+.|++
T Consensus 240 ~-------------~~~~---~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~ 280 (280)
T cd05092 240 G-------------RELE---RPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA 280 (280)
T ss_pred C-------------ccCC---CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence 0 0000 011345566799999999999999999999998863
No 274
>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=99.03 E-value=2.9e-12 Score=140.92 Aligned_cols=225 Identities=9% Similarity=-0.023 Sum_probs=137.1
Q ss_pred CccEEEEeecc-ccccCCCCCCcceeeecccCceEEEee----e--eEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 666 PQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFAY----Q--HYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 666 ~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~~----~--~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
.++||.+.... ..-......|...++-.+|.|++.+.. + ..+++++|++. |+|.+.+.+....+.+.....+
T Consensus 25 ~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~ 103 (262)
T cd05058 25 HCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKH-GDLRNFIRSETHNPTVKDLIGF 103 (262)
T ss_pred EEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCC-CCHHHHHHhcCCCCCHHHHHHH
Confidence 36777764321 111223334555567778999988762 1 36899999999 9988776542222333322223
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchh-h-hcccccCCcchhhhhhhcc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTA-A-QDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 815 (1081)
+..+++|+.|||...+ |+.++++|++++..+.+|++|||+...-..+.. . ........+ ..
T Consensus 104 --------~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~--------~~ 167 (262)
T cd05058 104 --------GLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLP--------VK 167 (262)
T ss_pred --------HHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCC--------cc
Confidence 4578899999999888 999999999999999999999998653111000 0 000000111 12
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
|.|||.... ...+.+.||||||++++|+++||.+... ..+..+.. .. +...
T Consensus 168 y~aPE~~~~-----------~~~~~~~Di~slG~~l~el~~~~~~~~~-~~~~~~~~----~~---~~~~---------- 218 (262)
T cd05058 168 WMALESLQT-----------QKFTTKSDVWSFGVLLWELMTRGAPPYP-DVDSFDIT----VY---LLQG---------- 218 (262)
T ss_pred ccChhHhcc-----------CccchHHHHHHHHHHHHHHHcCCCCCCC-CCCHHHHH----HH---HhcC----------
Confidence 677886532 1123457999999999999887664321 11100000 00 0000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++..+ -.++....+++..||..+|..||+...|.+.|++.
T Consensus 219 ---~~~~~~---~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~ 259 (262)
T cd05058 219 ---RRLLQP---EYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI 259 (262)
T ss_pred ---CCCCCC---CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 000000 12334566899999999999999999999888763
No 275
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=99.03 E-value=3.5e-12 Score=140.69 Aligned_cols=223 Identities=11% Similarity=0.016 Sum_probs=139.7
Q ss_pred ccEEEEeeccccc-cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 667 QNFQLYSWETFQP-VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 667 ~~i~~~~~~~~~l-~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
+++|.+......- ......|+..++-.+|.|++.+. ....++|++||+. |+|.+.+......+.|.....+
T Consensus 35 vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~-- 111 (266)
T cd05033 35 VAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMEN-GSLDKFLRENDGKFTVGQLVGM-- 111 (266)
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCC-CCHHHHHHhccCCCCHHHHHHH--
Confidence 6777664332211 11233466667777899988876 3567999999999 9998876543333444433333
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCC
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAA 819 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 819 (1081)
+..++.|+.|||...+ ||.++.+|+++++...+|++|||+...-..............+.. |.||
T Consensus 112 ------~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~--------y~~P 177 (266)
T cd05033 112 ------LRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIR--------WTAP 177 (266)
T ss_pred ------HHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCcc--------ccCh
Confidence 5577889999999888 999999999999999999999998875321110000000011112 5677
Q ss_pred CCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 820 SVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
|.... ...+.+.||||+|++++++++ |..|+.. .+.++... ....+
T Consensus 178 e~~~~-----------~~~~~~~Dv~slG~~l~~l~~~g~~p~~~--~~~~~~~~-------~~~~~------------- 224 (266)
T cd05033 178 EAIAY-----------RKFTSASDVWSFGIVMWEVMSYGERPYWD--MSNQDVIK-------AVEDG------------- 224 (266)
T ss_pred hhhcc-----------CCCccccchHHHHHHHHHHHccCCCCCCC--CCHHHHHH-------HHHcC-------------
Confidence 76532 112345799999999888765 5555531 11000000 00000
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..+..+ ..++....+++..|+..+|..||.+..|.+.|+++
T Consensus 225 ~~~~~~---~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 225 YRLPPP---MDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred CCCCCC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 000001 13455667999999999999999999999988764
No 276
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=99.03 E-value=3.8e-12 Score=140.61 Aligned_cols=223 Identities=10% Similarity=-0.001 Sum_probs=140.1
Q ss_pred ccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 667 QNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 667 ~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
+++|.++-.... -..++..|++-++-.+|.|++.+. ....++|+||++. ++|.+.+......+.|.....+
T Consensus 36 ~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~-- 112 (268)
T cd05063 36 VAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMEN-GALDKYLRDHDGEFSSYQLVGM-- 112 (268)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCC-CCHHHHHHhcCCCCCHHHHHHH--
Confidence 677766433211 112244456666667788988877 4567899999998 8988776542233444443333
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcc-cccCCcchhhhhhhccccC
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDR-IKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 818 (1081)
+.++..|+.|||...+ |+.++.+|++++....+|++|||+...-......... .....+.. |.|
T Consensus 113 ------~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~--------y~~ 178 (268)
T cd05063 113 ------LRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIR--------WTA 178 (268)
T ss_pred ------HHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCce--------ecC
Confidence 5577889999999998 9999999999999999999999987643211111100 00001111 667
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
||+... ...+.+.||||+|++++|+.+ |..|+..... ++... ..... .
T Consensus 179 PE~~~~-----------~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~--~~~~~-------~i~~~-----------~ 227 (268)
T cd05063 179 PEAIAY-----------RKFTSASDVWSFGIVMWEVMSFGERPYWDMSN--HEVMK-------AINDG-----------F 227 (268)
T ss_pred HHHhhc-----------CCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH--HHHHH-------HHhcC-----------C
Confidence 776421 112345799999999999875 6666632110 00000 00000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..|. ...++....+++..||..+|..||.+..|...|+++
T Consensus 228 ~~~~-----~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 228 RLPA-----PMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred CCCC-----CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 0010 013445567999999999999999999999998764
No 277
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=99.03 E-value=2.2e-12 Score=145.36 Aligned_cols=223 Identities=12% Similarity=0.028 Sum_probs=139.7
Q ss_pred ccEEEEeeccccc-cCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQP-VGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l-~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|.+......- ..+...|...++-.+|.|++.+. .++.+++++|++. |+|.+.+......+.+.....+
T Consensus 39 vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~~~-g~l~~~~~~~~~~~~~~~~~~~--- 114 (303)
T cd05110 39 VAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPH-GCLLDYVHEHKDNIGSQLLLNW--- 114 (303)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhcCC-CCHHHHHHhcccCCCHHHHHHH---
Confidence 5777765443211 11234466677778899999987 4567899999999 9888765432222333322223
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..+..|+.|||...+ |+.+|++|++++....+|++|||+..................+. .|.|||
T Consensus 115 -----~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~--------~y~~PE 181 (303)
T cd05110 115 -----CVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPI--------KWMALE 181 (303)
T ss_pred -----HHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCcccc--------ccCCHH
Confidence 4578899999999888 99999999999998999999999886532111100000000111 166777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
... +...+.+.||||||++++|+++ |+.|+... +..+.. .. ...+ ..+
T Consensus 182 ~~~-----------~~~~~~~~DiwslG~~l~el~t~g~~p~~~~--~~~~~~----~~---~~~~-----------~~~ 230 (303)
T cd05110 182 CIH-----------YRKFTHQSDVWSYGVTIWELMTFGGKPYDGI--PTREIP----DL---LEKG-----------ERL 230 (303)
T ss_pred Hhc-----------cCCCChHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHH----HH---HHCC-----------CCC
Confidence 642 1123445799999999999876 66665311 100000 00 0000 000
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+. .-.+.....+++..||..+|..||.+..+.+.|+++
T Consensus 231 ~~-----~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~ 268 (303)
T cd05110 231 PQ-----PPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRM 268 (303)
T ss_pred CC-----CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 10 012344567899999999999999999999888765
No 278
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=99.02 E-value=8.7e-12 Score=138.82 Aligned_cols=241 Identities=12% Similarity=0.018 Sum_probs=150.1
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-------eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-------YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-------~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
+..+++|.+...... ....+..|++.++-.+|.|++.+. ....+++++||+. ++|.+.+......++|...
T Consensus 33 ~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~~l~~~l~~~~~~~~~~~~ 111 (284)
T cd05038 33 GEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPS-GSLRDYLQRHRDQINLKRL 111 (284)
T ss_pred ceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCC-CCHHHHHHhCccccCHHHH
Confidence 455888888765543 333456667777777899998875 1257899999998 8998877553333555544
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh-hcccccCCcchhhhhhh
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA-QDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 813 (1081)
..+ +..+..|+.|||...+ |+.++++|++++....+|++|||+.......... ........ .
T Consensus 112 ~~~--------~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~--------~ 175 (284)
T cd05038 112 LLF--------SSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGES--------P 175 (284)
T ss_pred HHH--------HHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCC--------c
Confidence 444 5577889999999888 9999999999999999999999987653311100 00000001 1
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.+|.|||..... ..+.+.||||+|++++|+++|..|+...... .+...+...+.. ...+.
T Consensus 176 ~~~~~Pe~~~~~-----------~~~~~~Di~slG~~l~el~tg~~p~~~~~~~--------~~~~~~~~~~~~-~~~~~ 235 (284)
T cd05038 176 IFWYAPECLRTS-----------KFSSASDVWSFGVTLYELFTYGDPSQSPPAE--------FLRMIGIAQGQM-IVTRL 235 (284)
T ss_pred ccccCcHHHccC-----------CCCcccchHHHhhhhheeeccCCCcccccch--------hccccccccccc-cHHHH
Confidence 226777765321 1234479999999999999988765321111 000000000000 00000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..........+ ....|+....+++..||..+|..||+...|...|+++
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 236 LELLKEGERLP-RPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred HHHHHcCCcCC-CCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 00000000000 0123556777999999999999999999999998864
No 279
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.9e-08 Score=116.02 Aligned_cols=205 Identities=12% Similarity=0.093 Sum_probs=127.9
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEe---cCcEEEEEecCCCcccccccccCCCCeeEE
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC---VNKAIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s---~d~~i~wd~~t~~~~~~~~~~~~~~~I~~i 170 (1081)
...|.+||...... .....+ ...+.+.+|+|||+.++.+.. ...+.+||+.+++...+.... ......
T Consensus 178 ~~~l~~~d~dg~~~-----~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~ 248 (429)
T PRK03629 178 PYELRVSDYDGYNQ-----FVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAP 248 (429)
T ss_pred ceeEEEEcCCCCCC-----EEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCe
Confidence 34688888776542 111222 456889999999986655432 223446898876544443222 234467
Q ss_pred EEeeccccCCCCEEEEE-ECCC--eEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCC-CcEEEE--Ec
Q 001416 171 EFLSRSAVGDVPLVAFG-SSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-GLLILW--SA 244 (1081)
Q Consensus 171 a~~p~~~sp~~~~l~sg-s~Dg--~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~D-g~V~vW--d~ 244 (1081)
+| +|||+.|+.. +.+| .|.+||+.+++..+. . .+...+.... ++|+|+.|+..+.+ +...+| |+
T Consensus 249 ~~-----SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t-~~~~~~~~~~---wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 249 AF-----SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-T-DGRSNNTEPT---WFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EE-----CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-c-CCCCCcCceE---ECCCCCEEEEEeCCCCCceEEEEEC
Confidence 89 7899988765 3444 588999988766543 3 3445566776 48999988877754 444555 56
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC---CeEEEEECCCCceeeEecCCCccccCCCCeEEEe
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D---g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~ 321 (1081)
.+++.. .+..+........|+| ++++|+..+.+ ..|.+||+.+++. +.+.. .+ ......
T Consensus 319 ~~g~~~-------~lt~~~~~~~~~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-----~~--~~~~p~ 380 (429)
T PRK03629 319 NGGAPQ-------RITWEGSQNQDADVSS---DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-----TF--LDETPS 380 (429)
T ss_pred CCCCeE-------EeecCCCCccCEEECC---CCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-----CC--CCCCce
Confidence 554321 1222334456788999 88888876643 3588899988764 33311 11 123567
Q ss_pred ecCCCCEE-EEECCc
Q 001416 322 RAPNLDIL-TCVKDS 335 (1081)
Q Consensus 322 ~spd~~ll-s~s~D~ 335 (1081)
|+|||+.| .++.++
T Consensus 381 ~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 381 IAPNGTMVIYSSSQG 395 (429)
T ss_pred ECCCCCEEEEEEcCC
Confidence 99999966 455553
No 280
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=4.7e-08 Score=109.49 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=137.9
Q ss_pred CeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcC
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~ 245 (1081)
.-+.++++ .|+..+++ ++....|.-+++..|+-+..+. -..+.++++. .++...+|++|+.||.|-.||.+
T Consensus 135 ~GRDm~y~----~~scDly~-~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~---in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 135 FGRDMKYH----KPSCDLYL-VGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVS---INEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred CCcccccc----CCCccEEE-eecCcceEEEEccccccccccc-cccccceeee---ecCccceEEecccCceEEEecch
Confidence 34566774 34555444 4455568888999999998886 5668899988 57777899999999999999999
Q ss_pred CCCcccccccceeecccCCc-----EEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 246 HGQDSRELVPKLSLKAHDGG-----VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 246 ~~~~~~~~~~~~~l~~h~~~-----V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
....+..+........|.+. |+++.|+. ++-.++.|..+|.|.|||+++.+++..- -.+...+|..+
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d---~gL~~aVGts~G~v~iyDLRa~~pl~~k-----dh~~e~pi~~l 277 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD---DGLHVAVGTSTGSVLIYDLRASKPLLVK-----DHGYELPIKKL 277 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecC---CceeEEeeccCCcEEEEEcccCCceeec-----ccCCccceeee
Confidence 87765544333333444443 99999986 7999999999999999999998887542 12334478888
Q ss_pred eecCCCC---EEEEECC-ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEE
Q 001416 321 PRAPNLD---ILTCVKD-SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1081)
Q Consensus 321 ~~spd~~---lls~s~D-~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il 395 (1081)
.|.+.+. ++++-.. .+|||-.. +++...+.+. . .++.+++-|+ .-++.++-+++.+.
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~---------------Gk~~asiEpt-~-~lND~C~~p~-sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECT---------------GKPMASIEPT-S-DLNDFCFVPG-SGMFFTANESSKMH 338 (703)
T ss_pred cccccCCCceEEecchHHhhhccccc---------------CCceeecccc-C-CcCceeeecC-CceEEEecCCCcce
Confidence 8877632 3333222 27999775 3343344322 2 5888999997 55668888888763
No 281
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=99.01 E-value=4e-12 Score=141.93 Aligned_cols=231 Identities=8% Similarity=-0.054 Sum_probs=142.9
Q ss_pred CCCCccEEEEeeccccccC---CCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeE
Q 001416 663 EAAPQNFQLYSWETFQPVG---GLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~---~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~ 733 (1081)
.|..+++|.++.+...-.. ....|++.+.-.+|.+++.+. ....++|++||+. |+|.+.+... ...+.+.
T Consensus 24 ~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~~~~~~~~~~~~~ 102 (285)
T cd05631 24 TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNG-GDLKFHIYNMGNPGFDEQ 102 (285)
T ss_pred CCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCC-CcHHHHHHhhCCCCCCHH
Confidence 4566899988765443221 234466667777888998887 3568999999999 9987655331 1223333
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..+..|+.|||...+ |+.+|++|++++....+|++|||+...-........ .....
T Consensus 103 ~~~~~--------~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~---~~g~~------ 165 (285)
T cd05631 103 RAIFY--------AAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRG---RVGTV------ 165 (285)
T ss_pred HHHHH--------HHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecC---CCCCC------
Confidence 33333 5578899999999888 999999999999999999999998764211100000 00111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCC--CCCCCCCCcEEeeeecCeEEEE
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPT--EQKRPIGPLVVVGVKDGVLWLI 890 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~ 890 (1081)
.|.|||+.... .-+.+.||||+|++++++++|..||....... +++.. .+...
T Consensus 166 --~y~aPE~~~~~-----------~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~-------~~~~~----- 220 (285)
T cd05631 166 --GYMAPEVINNE-----------KYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDR-------RVKED----- 220 (285)
T ss_pred --CccCHhhhcCC-----------CCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHH-------Hhhcc-----
Confidence 26788876421 12234699999999999999888875321110 00000 00000
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCccc-----HHHHHH--HHHhcCcHHHH
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREH-----HDDLAQ--FMLGMGYATEA 948 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----~~~i~~--~l~~~~~~~yA 948 (1081)
. ..+.-.......++++.|+..+|..||. ...+.+ +++..+.++..
T Consensus 221 ---------~---~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~~~ 273 (285)
T cd05631 221 ---------Q---EEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLE 273 (285)
T ss_pred ---------c---ccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHHHHH
Confidence 0 0000112345678999999999999986 444443 34444444443
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=133.50 Aligned_cols=195 Identities=19% Similarity=0.343 Sum_probs=150.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceE
Q 001416 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1081)
Q Consensus 9 gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~ 88 (1081)
-|-..|+++.=||..++-+||+.||.|++|.+..++.+..+...
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------------------------------ 2249 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------------------------------------ 2249 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------------------------------------
Confidence 45577888999999999999999999999998766555555421
Q ss_pred EEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCee
Q 001416 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLV 168 (1081)
Q Consensus 89 ~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~ 168 (1081)
. .+.|+.+.|+.+|+.+-++.+++.+-.|.... +.......|.....
T Consensus 2250 ---------------g---------------~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2250 ---------------G---------------NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---KPYTSWQCHNKALS 2296 (2439)
T ss_pred ---------------C---------------cchhhhhhhcccCCceeeeccCCceeecccCC---cceeccccCCcccc
Confidence 1 23456777888888787888888888897662 45556677888888
Q ss_pred EEEEeeccccCCCCEEEEEE---CCCeEEEEEcCC---CeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 001416 169 CMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMIS---WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs---~Dg~I~lwd~~~---~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vW 242 (1081)
...|. +..+++++ +++.+.+||..- ..++. . .|.+.+++++ +-|...+|+|||.+|.|++|
T Consensus 2297 Df~Fi-------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~---~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2297 DFRFI-------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLA---YAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred ceeee-------ehhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEE---EcCcceEEEecCCcCcEEEe
Confidence 89885 35677664 678999999742 23444 3 8999999998 58889999999999999999
Q ss_pred EcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEe
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~ 304 (1081)
|++..+..+.+ +. ++ ...++++|+..|.++||++.....++++
T Consensus 2364 D~rqrql~h~~------~~---------~~----~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2364 DIRQRQLRHTF------QA---------LD----TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ehHHHHHHHHh------hh---------hh----hhheeeccCcccceEEEEccccchhhcC
Confidence 99987754432 21 22 4579999999999999999988777776
No 283
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=99.01 E-value=4.7e-12 Score=138.89 Aligned_cols=220 Identities=10% Similarity=0.013 Sum_probs=140.2
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe------eeeEEEEEecCccccccccccccccc-ceeeEee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA------YQHYIVISSLCPQYRYLGDVAIPYAT-GAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~------~~~~~~v~~y~~~~gsl~d~~~~~~~-~~~w~~~ 735 (1081)
+|..+++|.+..+.. ......|...++-.+|.|++.+. ....++++||++. |+|.+.+.+... .+.|...
T Consensus 28 ~~~~~~~k~~~~~~~--~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~ 104 (256)
T cd05082 28 RGNKVAVKCIKNDAT--AQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK-GSLVDYLRSRGRSVLGGDCL 104 (256)
T ss_pred cCCcEEEEEeCCCch--HHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCC-CcHHHHHHhcCCCCCCHHHH
Confidence 455678887754422 22244466566667889998866 2357899999998 888876543211 1333332
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +.++..|+.|||...+ |+.++++|++++.+..+|++|||+........... ..+.
T Consensus 105 ~~~--------~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~-----~~~~-------- 163 (256)
T cd05082 105 LKF--------SLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG-----KLPV-------- 163 (256)
T ss_pred HHH--------HHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccCCCC-----ccce--------
Confidence 333 5578899999999988 99999999999999999999999865321111000 0111
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.+.|||.... ...+.+.||||+|++++++++ |..|+....+. +..+. +..+
T Consensus 164 ~y~aPE~~~~-----------~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~--~~~~~-------~~~~-------- 215 (256)
T cd05082 164 KWTAPEALRE-----------KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPR-------VEKG-------- 215 (256)
T ss_pred eecCHHHHcc-----------CCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH-------HhcC--------
Confidence 1566775421 123345799999999999986 55555322111 00000 0000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
++ +...-.++....+++.+|+..+|..||++..+.+.|+.+
T Consensus 216 -----~~---~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 256 (256)
T cd05082 216 -----YK---MDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI 256 (256)
T ss_pred -----CC---CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence 00 001113456677999999999999999999999988753
No 284
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=99.01 E-value=2.5e-12 Score=142.17 Aligned_cols=215 Identities=10% Similarity=0.034 Sum_probs=129.4
Q ss_pred CCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccce----eeEeeeeeEeccCceEEEeeeCC
Q 001416 683 LLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGA----VWHRRQLFVVTPTTIECVFVDAG 753 (1081)
Q Consensus 683 ~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~----~w~~~~~~~~t~~~i~~~~~~~g 753 (1081)
.+.|++.++-.+|.|++.+. ....++|+|||+. |+|.+.+....... ++..-..+ +..+++|
T Consensus 42 ~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~~~~~~--------~~qi~~~ 112 (269)
T cd05042 42 FLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPL-GDLKNYLRSNRGMVAQMAQKDVLQRM--------ACEVASG 112 (269)
T ss_pred HHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCC-CcHHHHHHhccccccccccHHHHHHH--------HHHHHHH
Confidence 34455556667899999887 4568999999998 99988765421111 11111112 3467899
Q ss_pred ccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCcccc
Q 001416 754 VAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTK 832 (1081)
Q Consensus 754 m~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 832 (1081)
+.|||...+ |+.+|++|++++..+.+|++|||+......+...........+.. |.|||+........
T Consensus 113 l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~~~~~~--- 181 (269)
T cd05042 113 LLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLR--------WLAPELVEIRGQDL--- 181 (269)
T ss_pred HHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCccc--------ccCHHHHhhccccc---
Confidence 999999988 999999999999999999999998643221110000000011112 56788754321100
Q ss_pred ccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecc
Q 001416 833 VEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCL 911 (1081)
Q Consensus 833 ~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~ 911 (1081)
.+...+.+.||||+|++++|++++| .|+.. ...++.... ..... ..++..+.+.-.+.
T Consensus 182 -~~~~~~~~~DiwslG~~l~el~~~~~~p~~~--~~~~~~~~~------~~~~~------------~~~~~~~~~~~~~~ 240 (269)
T cd05042 182 -LPKDQTKKSNIWSLGVTMWELFTAADQPYPD--LSDEQVLKQ------VVREQ------------DIKLPKPQLDLKYS 240 (269)
T ss_pred -cccccchhhHHHHHHHHHHHHHhCCCCCCCc--CCHHHHHHH------Hhhcc------------CccCCCCcccccCC
Confidence 0112345689999999999988744 44431 110000000 00000 01222233333455
Q ss_pred cccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 912 AAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 912 ~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
....+++..||. +|..||..+.|...|
T Consensus 241 ~~~~~~~~~~~~-dp~~Rpt~~~v~~~l 267 (269)
T cd05042 241 DRWYEVMQFCWL-DPETRPTAEEVHELL 267 (269)
T ss_pred HHHHHHHHHHhc-CcccccCHHHHHHHh
Confidence 566778899994 899999999998876
No 285
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=99.01 E-value=6.4e-12 Score=138.20 Aligned_cols=222 Identities=10% Similarity=0.040 Sum_probs=141.4
Q ss_pred CCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEeeeee
Q 001416 665 APQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQLF 738 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~~~ 738 (1081)
+.+++|.+...... .+.+..|++.++-.+|.|++.+. ....++|+|||+. ++|.+.+.... ..+.|.....+
T Consensus 31 ~~v~iK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~ 108 (261)
T cd05068 31 TPVAVKTLKPGTMD-PKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKY-GSLLEYLQGGAGRALKLPQLIDM 108 (261)
T ss_pred eEEEEEeeCCCccc-HHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccC-CcHHHHHhccCCCCCCHHHHHHH
Confidence 34788887654322 12244566666677899998776 4567899999988 88887764321 23444443333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+..|+.|||...+ ||.++++|++++..-.+|++|||+...-...... .......+.. +.
T Consensus 109 --------~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~--------y~ 171 (261)
T cd05068 109 --------AAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYE-AREGAKFPIK--------WT 171 (261)
T ss_pred --------HHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCccc-ccCCCcCcee--------cc
Confidence 5678889999999888 9999999999999999999999988753311111 1011111222 66
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
|||.... ...+.+.||||+|++++++++ |..|+.- ....+.. ..+...
T Consensus 172 aPE~~~~-----------~~~~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~-------~~~~~~----------- 220 (261)
T cd05068 172 APEAALY-----------NRFSIKSDVWSFGILLTEIVTYGRMPYPG--MTNAEVL-------QQVDQG----------- 220 (261)
T ss_pred Ccccccc-----------CCCCchhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHH-------HHHHcC-----------
Confidence 7776532 112345799999999999887 5444421 1100000 000000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+++.. ...+.....+++..|+..+|..||+++.|...|+.
T Consensus 221 --~~~~~---~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 221 --YRMPC---PPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred --CCCCC---CCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 00000 11234556789999999999999999999999875
No 286
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=99.01 E-value=4e-12 Score=142.37 Aligned_cols=223 Identities=9% Similarity=-0.039 Sum_probs=139.0
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc--------------
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-------------- 727 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-------------- 727 (1081)
+++|.+.-.+..-......|+..+.=.+|.|++.+. ....++|++|++. ++|.+.+....
T Consensus 38 ~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~~~~~~ 116 (291)
T cd05094 38 VAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKH-GDLNKFLRAHGPDAMILVDGQPRQA 116 (291)
T ss_pred eEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCC-CcHHHHHHhcCcccccccccccccC
Confidence 566665443333223344566666777899999887 4568999999998 88887654311
Q ss_pred -cceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCc
Q 001416 728 -TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPP 805 (1081)
Q Consensus 728 -~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~ 805 (1081)
..+.|.....+ +..+.+|+.|||...+ |+.++++|++++....+|++|||+...................
T Consensus 117 ~~~~~~~~~~~i--------~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~ 188 (291)
T cd05094 117 KGELGLSQMLHI--------ASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLP 188 (291)
T ss_pred cCCCCHHHHHHH--------HHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcc
Confidence 11233323333 5578889999999999 9999999999999999999999987532211000000000001
Q ss_pred chhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeec
Q 001416 806 MLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKD 884 (1081)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 884 (1081)
..+.|||.... ...+.+.||||+|++++|+++ |..|+.. .+..+.. -....
T Consensus 189 --------~~y~aPE~~~~-----------~~~~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~-------~~~~~ 240 (291)
T cd05094 189 --------IRWMPPESIMY-----------RKFTTESDVWSFGVILWEIFTYGKQPWFQ--LSNTEVI-------ECITQ 240 (291)
T ss_pred --------eeecChHHhcc-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHH-------HHHhC
Confidence 12567776432 123345799999999999887 5555431 1110000 00000
Q ss_pred CeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 885 GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 885 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+ ... .....++....+++..||..+|..||+...|.+.|+..
T Consensus 241 ~-------------~~~---~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~ 282 (291)
T cd05094 241 G-------------RVL---ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHAL 282 (291)
T ss_pred C-------------CCC---CCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence 0 000 00112345567999999999999999999999998865
No 287
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=99.01 E-value=6.6e-12 Score=138.58 Aligned_cols=226 Identities=9% Similarity=-0.019 Sum_probs=138.5
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.|..+++|.+.-+...-...+..|++.+.-.+|.|++.+. ....++|+||++. ++|.+.+... ..+.+.....
T Consensus 33 ~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~-~~L~~~~~~~-~~~~~~~~~~ 110 (267)
T cd06646 33 TGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGG-GSLQDIYHVT-GPLSELQIAY 110 (267)
T ss_pred CCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCC-CcHHHHHHhc-CCCCHHHHHH
Confidence 3455788887654433333344566677777899998877 4577899999998 8888765431 1222221112
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+..|+.|||...+ |+.+++.|++++....+|++|||+...-...... ........ .|
T Consensus 111 ~--------~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~--------~y 172 (267)
T cd06646 111 V--------CRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAK--RKSFIGTP--------YW 172 (267)
T ss_pred H--------HHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccccc--cCccccCc--------cc
Confidence 2 4577889999999988 9999999999999999999999987632111100 00001111 27
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||...... +.....+.||||+|++++|+++|+.|+....-. ...... ... ..
T Consensus 173 ~~PE~~~~~~--------~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~-------~~~~~~--~~~-------~~-- 226 (267)
T cd06646 173 MAPEVAAVEK--------NGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-------RALFLM--SKS-------NF-- 226 (267)
T ss_pred cCHhHccccc--------CCCCcchhhHHHHHHHHHHHHhCCCCccccchh-------hhheee--ecC-------CC--
Confidence 7888653211 111223579999999999999988776421100 000000 000 00
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..+ ... ..........++++.|+..+|..||.++.|.+
T Consensus 227 -~~~-~~~-~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 264 (267)
T cd06646 227 -QPP-KLK-DKTKWSSTFHNFVKISLTKNPKKRPTAERLLT 264 (267)
T ss_pred -CCC-CCc-cccccCHHHHHHHHHHhhCChhhCcCHHHHhc
Confidence 000 000 01122345568999999999999999998754
No 288
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=99.00 E-value=4.3e-12 Score=138.50 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=138.0
Q ss_pred CCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 665 APQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
..+++|.+.-.... ....+..|+..+.-.+|.|++.+. ....++|+|||+. |+|.+.+......++|.....+
T Consensus 20 ~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~ 98 (250)
T cd05085 20 TPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPG-GDFLSFLRKKKDELKTKQLVKF 98 (250)
T ss_pred cEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCC-CcHHHHHHhcCCCCCHHHHHHH
Confidence 34677776543211 111233455555556899988877 4568999999999 8988776543333444443333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
..++..++.|||...+ ||.++++|++++....+|++|||+.............. ...+.. |.
T Consensus 99 --------~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~-~~~~~~--------y~ 161 (250)
T cd05085 99 --------ALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGL-KQIPIK--------WT 161 (250)
T ss_pred --------HHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCC-CCCccc--------cc
Confidence 5678889999999888 99999999999999999999999875422111000000 001111 56
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
|||.... ...+.+.||||+|++++++++ |..|+...... ... ..+..+
T Consensus 162 aPE~~~~-----------~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~--~~~-------~~~~~~----------- 210 (250)
T cd05085 162 APEALNY-----------GRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ--QAR-------EQVEKG----------- 210 (250)
T ss_pred CHHHhcc-----------CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH--HHH-------HHHHcC-----------
Confidence 7776421 112345799999999898876 54455321111 000 000000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
+... ....++....+++..|+..+|..||.+..+.+.|+
T Consensus 211 --~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 211 --YRMS---CPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred --CCCC---CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 0000 01123456678999999999999999999988774
No 289
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=99.00 E-value=7e-12 Score=138.19 Aligned_cols=228 Identities=10% Similarity=-0.040 Sum_probs=144.4
Q ss_pred CCCCccEEEEeecc---ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc---cccee
Q 001416 663 EAAPQNFQLYSWET---FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY---ATGAV 731 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~---~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~---~~~~~ 731 (1081)
.|+.+++|.+.-.. .....++..|++.++-.+|.+++.+. .+..++|+|||+. |+|.+.+.+. ...+.
T Consensus 26 ~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~ 104 (267)
T cd08224 26 DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADA-GDLSRMIKHFKKQKRLIP 104 (267)
T ss_pred CCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCC-CCHHHHHHHhcccCCCcC
Confidence 35567888764322 22223355567777778899988887 4678999999998 8988766431 12233
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVV 810 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1081)
+.....+ +.++.+|+.|||...+ ||.++++|++++..-.+|++|||+...-...+.... ......
T Consensus 105 ~~~~~~~--------~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~--~~~~~~---- 170 (267)
T cd08224 105 ERTIWKY--------FVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH--SLVGTP---- 170 (267)
T ss_pred HHHHHHH--------HHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccc--eecCCc----
Confidence 3333333 5678899999999988 999999999999999999999998654221111000 001111
Q ss_pred hhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEE
Q 001416 811 RLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLI 890 (1081)
Q Consensus 811 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 890 (1081)
.|.|||.... .....+.||||+|+++++++.|..|+.....+...... ....+
T Consensus 171 ----~y~apE~~~~-----------~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~-------~~~~~----- 223 (267)
T cd08224 171 ----YYMSPERIHE-----------NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCK-------KIEKC----- 223 (267)
T ss_pred ----cccCHHHhcc-----------CCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHh-------hhhcC-----
Confidence 2677776531 11234579999999999999888776432221000000 00000
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...++. .-.......+++..||..+|..||++..|...|+++
T Consensus 224 ------~~~~~~----~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 224 ------DYPPLP----ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred ------CCCCCC----hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 000010 112234556899999999999999999999998876
No 290
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=99.00 E-value=1.8e-12 Score=141.79 Aligned_cols=224 Identities=10% Similarity=-0.012 Sum_probs=139.2
Q ss_pred CCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.+.... .+...++..|.+.++-.+|.|++.+. ....++|+||++. ++|.+.+.+....+.|.....
T Consensus 20 ~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~ 98 (252)
T cd05084 20 NTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG-GDFLTFLRTEGPRLKVKELIQ 98 (252)
T ss_pred CceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccC-CcHHHHHHhCCCCCCHHHHHH
Confidence 4457788764322 12223345566666667899999987 4567899999998 888887654333344443333
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ ...+..|+.|||...+ |+.++.+|++++....+|++|||+..................+.. |
T Consensus 99 ~--------~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~--------y 162 (252)
T cd05084 99 M--------VENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVK--------W 162 (252)
T ss_pred H--------HHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCcee--------e
Confidence 3 5577889999999888 999999999999999999999998653111000000000000111 5
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
.|||.... ...+.+.||||+|+++++++. |..|+.. ++.+... .. ...
T Consensus 163 ~aPE~~~~-----------~~~~~~~Dv~slG~il~e~~~~~~~p~~~--~~~~~~~-----~~--~~~----------- 211 (252)
T cd05084 163 TAPEALNY-----------GRYSSESDVWSFGILLWEAFSLGAVPYAN--LSNQQTR-----EA--IEQ----------- 211 (252)
T ss_pred cCchhhcC-----------CCCChHHHHHHHHHHHHHHHhCCCCCccc--cCHHHHH-----HH--HHc-----------
Confidence 67776421 112345799999999999886 4444431 1100000 00 000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
..++.. .-.++....++++.|+..+|..||+++.+.+.|+
T Consensus 212 --~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 212 --GVRLPC---PELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred --CCCCCC---cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 000110 1133456678999999999999999999998875
No 291
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.00 E-value=4.7e-12 Score=143.12 Aligned_cols=235 Identities=11% Similarity=0.028 Sum_probs=157.5
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.++.||||.+|.+...--.-++-|+.-|+..+|.|+|.|. ..+.-+|+||=.- |+|.||...- .++-.....
T Consensus 297 ~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~g-gsLTDvVt~~--~~~E~qIA~ 373 (550)
T KOG0578|consen 297 TKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEG-GSLTDVVTKT--RMTEGQIAA 373 (550)
T ss_pred CCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCC-Cchhhhhhcc--cccHHHHHH
Confidence 4666999999998766555588899999999999999998 5679999999887 9999987752 111111111
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
. |.-+..|+.|||...| |-.+||.|.+.+-.=-+||||||+-..-..+. .-|+.|.. .-||
T Consensus 374 I--------cre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~------~KR~TmVG----TPYW 435 (550)
T KOG0578|consen 374 I--------CREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQ------SKRSTMVG----TPYW 435 (550)
T ss_pred H--------HHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeecccccc------CccccccC----CCCc
Confidence 1 3345679999999999 99999999987666669999999987522211 12333432 2369
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
+|||+--.. .-+.+.||||.||+.+|++-|.-||-. + .|-+.+|+.--...
T Consensus 436 MAPEVvtrk-----------~YG~KVDIWSLGIMaIEMveGEPPYln---E----~PlrAlyLIa~ng~----------- 486 (550)
T KOG0578|consen 436 MAPEVVTRK-----------PYGPKVDIWSLGIMAIEMVEGEPPYLN---E----NPLRALYLIATNGT----------- 486 (550)
T ss_pred cchhhhhhc-----------ccCccccchhhhhHHHHHhcCCCCccC---C----ChHHHHHHHhhcCC-----------
Confidence 999995321 124468999999999999988888732 1 11123333221111
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhcCcHHHHhccccchH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISK 956 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~~~~yA~~le~lv~ 956 (1081)
+.|..+. .......||...|-..+++.|+.-..+- .-.+-+.|..++.|.+
T Consensus 487 --P~lk~~~---klS~~~kdFL~~cL~~dv~~RasA~eLL----~HpFl~~a~p~ssL~p 537 (550)
T KOG0578|consen 487 --PKLKNPE---KLSPELKDFLDRCLVVDVEQRASAKELL----EHPFLKMAKPESSLNP 537 (550)
T ss_pred --CCcCCcc---ccCHHHHHHHHHHhhcchhcCCCHHHHh----cChhhhhcCCHHHhHH
Confidence 1111110 2345678999999999999998765543 2223355666665543
No 292
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=99.00 E-value=6.2e-12 Score=137.88 Aligned_cols=220 Identities=10% Similarity=0.014 Sum_probs=144.8
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc-ceeeEeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT-GAVWHRRQ 736 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~-~~~w~~~~ 736 (1081)
+|+.+++|.+..... ...++..|...++-.+|.|++.+. ....++|+|||+. ++|.+.+.+... .+.|....
T Consensus 28 ~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~~~~ 105 (256)
T cd05039 28 RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAK-GSLVDYLRSRGRAVITLAQQL 105 (256)
T ss_pred cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCC-CcHHHHHHhcCCCCCCHHHHH
Confidence 456689998876644 334455677777888899999887 4678999999998 888877654221 23444333
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..++.|+.|||...+ |+.++.+|++++.+.++|++|||+......... ....+. .
T Consensus 106 ~~--------~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~-----~~~~~~--------~ 164 (256)
T cd05039 106 GF--------ALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD-----SGKLPV--------K 164 (256)
T ss_pred HH--------HHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc-----cCCCcc--------c
Confidence 33 5678889999999998 999999999999999999999997653211100 000111 2
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
|.|||..... .-+.+.||||+|+++++++. |..|+... +.+... . ....+
T Consensus 165 ~~ape~~~~~-----------~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~-----~--~~~~~--------- 215 (256)
T cd05039 165 WTAPEALREK-----------KFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVV-----P--HVEKG--------- 215 (256)
T ss_pred ccCchhhcCC-----------cCCcHHHHHHHHHHHHHHHhcCCCCCCCC--CHHHHH-----H--HHhcC---------
Confidence 6777765311 12235799999999888875 55554311 100000 0 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
++.. ....++....++++.|+..+|..||++..+..+|+.
T Consensus 216 ----~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 216 ----YRME---APEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred ----CCCC---CccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 0000 011344566789999999999999999999998865
No 293
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=99.00 E-value=7.6e-12 Score=140.18 Aligned_cols=224 Identities=11% Similarity=0.005 Sum_probs=134.8
Q ss_pred CccEEEEeeccc-cccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCccccccccccccc------------
Q 001416 666 PQNFQLYSWETF-QPVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY------------ 726 (1081)
Q Consensus 666 ~~~i~~~~~~~~-~l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~------------ 726 (1081)
.+++|.+..... +...++..|+..+.=. +|.|++.+. ....++|+|||+. |+|.+.+...
T Consensus 44 ~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~-~~L~~~l~~~~~~~~~~~~~~~ 122 (293)
T cd05053 44 TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAH-GNLRDFLRARRPPGEYASPDDP 122 (293)
T ss_pred eEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCC-CcHHHHHHhcCCCccccccccc
Confidence 367777654311 1112233344444444 688998887 3468999999999 8887665321
Q ss_pred ---ccceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhccccc
Q 001416 727 ---ATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKL 802 (1081)
Q Consensus 727 ---~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~ 802 (1081)
...+.|.....+ +..++.|+.|||...+ |+.++++|++++....+|++|||+...-............
T Consensus 123 ~~~~~~l~~~~~~~i--------~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~ 194 (293)
T cd05053 123 RPPEETLTQKDLVSF--------AYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNG 194 (293)
T ss_pred cccccccCHHHHHHH--------HHHHHHHHHHHHHCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCC
Confidence 112222222222 4577889999999888 9999999999999999999999987642211100000000
Q ss_pred CCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEee
Q 001416 803 RPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVG 881 (1081)
Q Consensus 803 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ 881 (1081)
..+.. |.|||+... ...+.+.||||||++++|++. |+.|+...... +....
T Consensus 195 ~~~~~--------y~aPE~~~~-----------~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~------- 246 (293)
T cd05053 195 RLPVK--------WMAPEALFD-----------RVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVE--ELFKL------- 246 (293)
T ss_pred CCCcc--------ccCHHHhcc-----------CCcCcccceeehhhHHHHHhcCCCCCCCCCCHH--HHHHH-------
Confidence 11111 667776421 112345799999999999875 66665321111 10000
Q ss_pred eecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 882 VKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 882 ~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...+ ... .....+.....+++..|+..+|..||....|.+.|+.+
T Consensus 247 ~~~~-------------~~~---~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~ 291 (293)
T cd05053 247 LKEG-------------YRM---EKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM 291 (293)
T ss_pred HHcC-------------CcC---CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence 0000 000 01123455667899999999999999999998887653
No 294
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=99.00 E-value=9.5e-12 Score=136.48 Aligned_cols=218 Identities=9% Similarity=-0.005 Sum_probs=135.0
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
.++|.+...... ..+...|++.++-.+|.|++.+. ....++|+||++. ++|.+.+......+.|......
T Consensus 31 ~~iK~~~~~~~~-~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~i--- 105 (256)
T cd05059 31 VAIKMIREGAMS-EDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN-GCLLNYLRERKGKLGTEWLLDM--- 105 (256)
T ss_pred EEEEEeccCCCC-HHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC-CCHHHHHHhcccCCCHHHHHHH---
Confidence 677777543221 11233456666667899999876 3467899999998 8888766432222333322222
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..+..|+.|||...+ |+.++++|++++..+.+|++|||+............ .....+.. |.|||
T Consensus 106 -----~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~--------y~~Pe 171 (256)
T cd05059 106 -----CSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSS-QGTKFPVK--------WAPPE 171 (256)
T ss_pred -----HHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceeccccccccc-CCCCCCcc--------ccCHH
Confidence 4567889999999988 999999999999999999999998764322111000 00000111 56777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
+... ...+.+.||||+|++++++++ |..|+.. .+..+... ..... .
T Consensus 172 ~~~~-----------~~~~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~-------~~~~~-------------~ 218 (256)
T cd05059 172 VFDY-----------SRFSSKSDVWSFGVLMWEVFSEGKMPYER--FSNSEVVE-------SVSAG-------------Y 218 (256)
T ss_pred Hhcc-----------CCCCchhhHHHHHHHHHHHhccCCCCCCC--CCHHHHHH-------HHHcC-------------C
Confidence 6432 112335799999999999887 4444421 11000000 00000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
+...+ -.++....+++..||..+|..||++..+.+.|
T Consensus 219 ~~~~~---~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 219 RLYRP---KLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred cCCCC---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence 00111 12456678999999999999999999998775
No 295
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.7e-08 Score=115.77 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=106.1
Q ss_pred eecccCCCCCeEEEEEecCc---EEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC-CCe--EEEEE
Q 001416 124 ASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGV--IRVLS 197 (1081)
Q Consensus 124 ~sl~fsp~g~~~l~s~s~d~---~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~-Dg~--I~lwd 197 (1081)
.+..|+|||+.++++.+.++ +.+||+.+++... ...+.......+| +|+++.++..++ +|. |.++|
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~-----spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---LTNHFGIDTEPTW-----APDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE---CccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEE
Confidence 46789999987766655433 5568988765333 2233344567889 789999887774 444 66667
Q ss_pred cCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCC---cEEEEEcCCCCcccccccceeecccCCcEEEEEEeee
Q 001416 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1081)
Q Consensus 198 ~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg---~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 274 (1081)
+.+++...... +........ ++|+|+.++..+.++ .|.+||+.+++.. .+. +........|+|
T Consensus 323 l~~g~~~~lt~--~g~~~~~~~---~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-------~Lt-~~~~~~~p~~sp- 388 (433)
T PRK04922 323 ASGGSAERLTF--QGNYNARAS---VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-------TLT-PGSLDESPSFAP- 388 (433)
T ss_pred CCCCCeEEeec--CCCCccCEE---ECCCCCEEEEEECCCCceeEEEEECCCCCeE-------ECC-CCCCCCCceECC-
Confidence 76665433222 233444566 489999998766543 6999999876532 122 222345678999
Q ss_pred cCCCCEEEEEECC---CeEEEEECCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 275 MGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 275 ~~~~~~Lvsgs~D---g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
++++++..+.+ +.|.++++..+ ..+.+ ..+...+...+|+|
T Consensus 389 --dG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l------~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 --NGSMVLYATREGGRGVLAAVSTDGR-VRQRL------VSADGEVREPAWSP 432 (433)
T ss_pred --CCCEEEEEEecCCceEEEEEECCCC-ceEEc------ccCCCCCCCCccCC
Confidence 88888776653 45778887543 33333 33344555666766
No 296
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=98.99 E-value=5.5e-12 Score=139.42 Aligned_cols=215 Identities=11% Similarity=0.040 Sum_probs=124.7
Q ss_pred CCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc---eeeEeeeeeEeccCceEEEeeeCCc
Q 001416 683 LLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG---AVWHRRQLFVVTPTTIECVFVDAGV 754 (1081)
Q Consensus 683 ~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~---~~w~~~~~~~~t~~~i~~~~~~~gm 754 (1081)
...|.+.++=.+|.|++.+. ....++|+|||+. |+|.+.+.+.... ..+..-..+ +..+++|+
T Consensus 42 ~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~--------~~~i~~al 112 (268)
T cd05086 42 FLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCEL-GDLKSYLSQEQWHRRNSQLLLLQRM--------ACEIAAGV 112 (268)
T ss_pred HHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCC-CcHHHHHHhhhcccccccHHHHHHH--------HHHHHHHH
Confidence 44444555667899999887 3567999999998 8988766542110 111100111 44688899
Q ss_pred cccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccc
Q 001416 755 AAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKV 833 (1081)
Q Consensus 755 ~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 833 (1081)
.|||...+ |+.+|.+|++++.++.+|++|||+..................+.. |.|||+........
T Consensus 113 ~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~~~~~~---- 180 (268)
T cd05086 113 THMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLR--------WLAPELVGEFHGGL---- 180 (268)
T ss_pred HHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCccc--------ccCchhcccccCcc----
Confidence 99999888 999999999999999999999998542211100000001111222 78888864321110
Q ss_pred cCCCCCCcccccccceeeeeecCCcc-eeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceeccc
Q 001416 834 EGDDSMMPKDIEERKVNEIAVGGGGV-AVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLA 912 (1081)
Q Consensus 834 ~~~~~~~~~dvys~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~ 912 (1081)
.+...+.+.||||||++++|++.++. |+. ..+..+... .. ..+. ...+..+.+......
T Consensus 181 ~~~~~~~~~DiwslG~~l~el~~~~~~p~~--~~~~~~~~~---~~---~~~~------------~~~~~~~~~~~~~~~ 240 (268)
T cd05086 181 ITAEQTKPSNVWALGVTLWELFENAAQPYS--HLSDREVLN---HV---IKDQ------------QVKLFKPQLELPYSE 240 (268)
T ss_pred ccCCCCCcchhHHHHHHHHHHHhCCCCCCC--CCCHHHHHH---HH---Hhhc------------ccccCCCccCCCCcH
Confidence 01112345799999999999876443 432 121100000 00 0000 001111111111223
Q ss_pred ccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 913 AYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 913 ~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
...++++.|| .+|..||.+..|.+.|
T Consensus 241 ~~~~l~~~c~-~~P~~Rp~~~~i~~~l 266 (268)
T cd05086 241 RWYEVLQFCW-LSPEKRATAEEVHRLL 266 (268)
T ss_pred HHHHHHHHHh-hCcccCCCHHHHHHHh
Confidence 3456888899 6699999999998876
No 297
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.99 E-value=5.7e-12 Score=142.12 Aligned_cols=235 Identities=13% Similarity=0.026 Sum_probs=139.2
Q ss_pred CCCCccEEEEeecc-ccccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEe
Q 001416 663 EAAPQNFQLYSWET-FQPVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
++..+++|.+..+. ..-.+++..|+..+.=. +|.|++.+. ....++|+|||+. |+|.+.+.+. ..+..|.+
T Consensus 46 ~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~ 124 (304)
T cd05101 46 EAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK-GNLREYLRARRPPGMEYSY 124 (304)
T ss_pred cceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCC-CcHHHHHHhcCCccccccc
Confidence 34457888776432 12223344555555555 789998877 3467899999999 9988766532 11222222
Q ss_pred eeeeEe----ccCc-e-EEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcch
Q 001416 735 RQLFVV----TPTT-I-ECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPML 807 (1081)
Q Consensus 735 ~~~~~~----t~~~-i-~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~ 807 (1081)
+..... +... + -...++.|+.|||...+ |+.+|++|++++....+|++|||+..................+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~- 203 (304)
T cd05101 125 DIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPV- 203 (304)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCc-
Confidence 111000 0000 0 02367889999999888 99999999999999999999999875422111000000000001
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCe
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGV 886 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 886 (1081)
-|.|||.... ...+.+.||||+|++++++++ |+.|+.. .+.++... .+..+
T Consensus 204 -------~y~aPE~~~~-----------~~~~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~-------~~~~~- 255 (304)
T cd05101 204 -------KWMAPEALFD-----------RVYTHQSDVWSFGVLMWEIFTLGGSPYPG--IPVEELFK-------LLKEG- 255 (304)
T ss_pred -------eeeCchhhcc-----------CCCCchhhHHHHHHHHHHHHcCCCCCccc--CCHHHHHH-------HHHcC-
Confidence 1567776521 112345799999999999887 4455431 12111000 00001
Q ss_pred EEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 887 LWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 887 ~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
... .....+.....+++.+||...|..||++..|.+.|+++
T Consensus 256 ------------~~~---~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~ 296 (304)
T cd05101 256 ------------HRM---DKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRI 296 (304)
T ss_pred ------------CcC---CCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHH
Confidence 000 00124556677899999999999999999999988764
No 298
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=98.99 E-value=2.9e-12 Score=142.76 Aligned_cols=224 Identities=7% Similarity=-0.010 Sum_probs=142.1
Q ss_pred CCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeE
Q 001416 665 APQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV 739 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~ 739 (1081)
..++++.++.....-......|++.++..+|.|++.+. ....++|+||++. |+|.+.+.+....+.|.....+
T Consensus 31 ~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~-~~l~~~~~~~~~~l~~~~~~~~- 108 (282)
T cd06643 31 VLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG-GAVDAVMLELERPLTEPQIRVV- 108 (282)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC-CcHHHHHHhcCCCCCHHHHHHH-
Confidence 34677777665544444455577788889999999987 4578899999998 8887765442333444433333
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccC
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+..+..||.|||...+ ||.++.+|++++.+-.+|++|||+............ .... .-.|.|
T Consensus 109 -------~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~--------~~~y~a 171 (282)
T cd06643 109 -------CKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRD--SFIG--------TPYWMA 171 (282)
T ss_pred -------HHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccccccccc--cccc--------cccccC
Confidence 4567889999999988 999999999999999999999998653211100000 0001 112778
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
||+....... +...+.+.||||+|+++++++.|..|+..... .+.. . ..... ..
T Consensus 172 PE~~~~~~~~------~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~-----~--~~~~~-----------~~ 225 (282)
T cd06643 172 PEVVMCETSK------DRPYDYKADVWSLGITLIEMAQIEPPHHELNP--MRVL-----L--KIAKS-----------EP 225 (282)
T ss_pred HhhccccCCC------CCCCCccchhhhHHHHHHHHccCCCCccccCH--HHHH-----H--HHhhc-----------CC
Confidence 8876321111 11123457999999999999988877642110 0000 0 00000 00
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+ ...........++++.||..+|..||++..|.
T Consensus 226 ~~~---~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 260 (282)
T cd06643 226 PTL---AQPSRWSSEFKDFLKKCLEKNVDARWTTTQLL 260 (282)
T ss_pred CCC---CCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 000 00112345667999999999999999998774
No 299
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=98.99 E-value=3.6e-12 Score=144.31 Aligned_cols=221 Identities=6% Similarity=-0.132 Sum_probs=142.1
Q ss_pred CCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+..... .-......|.+.+.-.+|.|++.+. ....++|++||+. |+|.+.+... ..+.+...
T Consensus 18 ~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~-~~~~~~~~ 95 (312)
T cd05585 18 QRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFING-GELFHHLQRE-GRFDLSRA 95 (312)
T ss_pred CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCC-CcHHHHHHhc-CCCCHHHH
Confidence 45589998876432 1122344566667777899999876 4678999999999 9988766542 22333332
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+..|+.|||...+ |+.+|++|++++....+|++|||+............ ..... .
T Consensus 96 ~~~--------~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~gt--------~ 157 (312)
T cd05585 96 RFY--------TAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTN--TFCGT--------P 157 (312)
T ss_pred HHH--------HHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccc--cccCC--------c
Confidence 223 4567889999999988 999999999999999999999998754221111100 00011 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|.|||+.... ..+.+.||||+|++++++++|..||...... +.. . ....+
T Consensus 158 ~y~aPE~~~~~-----------~~~~~~DvwslGvil~el~tg~~pf~~~~~~--~~~------~-~~~~~--------- 208 (312)
T cd05585 158 EYLAPELLLGH-----------GYTKAVDWWTLGVLLYEMLTGLPPFYDENVN--EMY------R-KILQE--------- 208 (312)
T ss_pred ccCCHHHHcCC-----------CCCCccceechhHHHHHHHhCCCCcCCCCHH--HHH------H-HHHcC---------
Confidence 26788876321 1234579999999999999998887522111 000 0 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
++. +.........++++.|+..+|..||.+..+...|..
T Consensus 209 -----~~~---~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~h 247 (312)
T cd05585 209 -----PLR---FPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNH 247 (312)
T ss_pred -----CCC---CCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcC
Confidence 000 001233455789999999999999988776666553
No 300
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=98.99 E-value=8.1e-12 Score=137.37 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=136.5
Q ss_pred CccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEeeeeeE
Q 001416 666 PQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQLFV 739 (1081)
Q Consensus 666 ~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~~~~ 739 (1081)
.+++|.+.-.+.. ......|...++=.+|.|++.+. ....+++++||+. |+|.+.+.... ..+.+.....+
T Consensus 32 ~v~iK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~- 108 (261)
T cd05072 32 KVAVKTLKPGTMS-VQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAK-GSLLDFLKSDEGGKVLLPKLIDF- 108 (261)
T ss_pred eEEEEEccCCchh-HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCC-CcHHHHHHHhcCCCCCHHHHHHH-
Confidence 3677765432221 11233455556666899999876 4567899999999 89887664321 12222222222
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccC
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+..+..|+.|||...+ |+.++++|++++....+|++|||+...-........ .....+.. +.|
T Consensus 109 -------~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~--------y~a 172 (261)
T cd05072 109 -------SAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAR-EGAKFPIK--------WTA 172 (261)
T ss_pred -------HHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCceecc-CCCcccee--------cCC
Confidence 4578889999999888 999999999999999999999999864221100000 00001111 567
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
||.... ...+.+.||||+|++++++++ |..|+.. ...+.... ..... .
T Consensus 173 PE~~~~-----------~~~~~~~Di~slG~~l~~l~t~g~~p~~~--~~~~~~~~-------~~~~~-----------~ 221 (261)
T cd05072 173 PEAINF-----------GSFTIKSDVWSFGILLYEIVTYGKIPYPG--MSNSDVMS-------ALQRG-----------Y 221 (261)
T ss_pred HHHhcc-----------CCCChhhhhhhhHHHHHHHHccCCCCCCC--CCHHHHHH-------HHHcC-----------C
Confidence 775421 112345799999999999987 5555531 11000000 00000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++.. -.++....+++.+|+..+|..||.++.|.+.|+.+
T Consensus 222 ~~~~~-----~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 261 (261)
T cd05072 222 RMPRM-----ENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF 261 (261)
T ss_pred CCCCC-----CCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence 00100 13445667899999999999999999999998763
No 301
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.98 E-value=2e-11 Score=159.98 Aligned_cols=228 Identities=10% Similarity=-0.046 Sum_probs=141.5
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.|..+++|.++.... ....|++.++-.+|.|++.+. ....++|+|||+. |+|.+++.. ++|..+..
T Consensus 714 ~~~~vavK~~~~~~~----~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~-g~L~~~l~~----l~~~~~~~ 784 (968)
T PLN00113 714 NGMQFVVKEINDVNS----IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEG-KNLSEVLRN----LSWERRRK 784 (968)
T ss_pred CCcEEEEEEccCCcc----ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCC-CcHHHHHhc----CCHHHHHH
Confidence 456678887653221 112345666777999999998 4567999999999 999988753 77887766
Q ss_pred eEeccCceEEEeeeCCccccch---hhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 738 FVVTPTTIECVFVDAGVAAIDV---ETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~---s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
+ +.++++||.|||. ..+ |+.+|++|+++|+....++. +|+......+... . ..
T Consensus 785 i--------~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~------~--------~t 841 (968)
T PLN00113 785 I--------AIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKC------F--------IS 841 (968)
T ss_pred H--------HHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCCc------c--------cc
Confidence 6 7789999999994 355 99999999999998877664 4443221111000 0 01
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCe-EEEEec
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGV-LWLIDR 892 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~d~ 892 (1081)
..|.|||+... ...+.+.||||||++++|+++|..|+....-........ ..+. +.+.. -..+|.
T Consensus 842 ~~y~aPE~~~~-----------~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~ 907 (968)
T PLN00113 842 SAYVAPETRET-----------KDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEW-ARYC--YSDCHLDMWIDP 907 (968)
T ss_pred ccccCcccccC-----------CCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHH-HHHh--cCccchhheeCc
Confidence 23889998642 113345799999999999999998873211000000000 0000 00000 000111
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
... . .............+++..||..+|..||.+.++.+.|+++
T Consensus 908 ~~~-----~-~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~ 951 (968)
T PLN00113 908 SIR-----G-DVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESA 951 (968)
T ss_pred ccc-----C-CCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHh
Confidence 000 0 0001112333456788899999999999999999988765
No 302
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=98.98 E-value=2.9e-12 Score=143.24 Aligned_cols=223 Identities=9% Similarity=-0.027 Sum_probs=139.7
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc------------c
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT------------G 729 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~------------~ 729 (1081)
+++|.++..+......+..|+..+.-.+|.|++.+. ....++|+||++. |+|.+.+.+... .
T Consensus 38 ~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~~~~~~ 116 (288)
T cd05093 38 VAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKH-GDLNKFLRAHGPDAVLMAEGNRPAE 116 (288)
T ss_pred EEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCC-CCHHHHHHHcCCccccccccCCCCC
Confidence 567766554433333455566666777899999887 4678999999998 888766543211 1
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.+.....+ ...++.++.|||...+ |+.+|++|++++....+|++|||+......... ....-...
T Consensus 117 l~~~~~~~~--------~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~--- 183 (288)
T cd05093 117 LTQSQMLHI--------AQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDY--YRVGGHTM--- 183 (288)
T ss_pred CCHHHHHHH--------HHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccCCccccccCCce--eecCCCCC---
Confidence 223222223 4578889999999998 999999999999999999999998653211100 00000000
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
....|.|||.... ...+.+.||||||++++++++ |..|+...... .. ......+..
T Consensus 184 ---~~~~y~aPE~~~~-----------~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~--~~-------~~~i~~~~~ 240 (288)
T cd05093 184 ---LPIRWMPPESIMY-----------RKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EV-------IECITQGRV 240 (288)
T ss_pred ---ccccccCHHHhcc-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HH-------HHHHHcCCc
Confidence 0012677876532 123345799999999999987 44444211110 00 000011100
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++. -.+.....+++..||..+|..||+...+.+.|+++
T Consensus 241 -----------~~~~-----~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~ 279 (288)
T cd05093 241 -----------LQRP-----RTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNL 279 (288)
T ss_pred -----------CCCC-----CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 0000 02334567899999999999999999999998875
No 303
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=98.98 E-value=2.5e-11 Score=148.53 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=143.3
Q ss_pred ccEEEEeecccc-ccCCCCCCcceeeecc-cCceEEEe-----eeeEEEEEecCcccccccccccccccceee-------
Q 001416 667 QNFQLYSWETFQ-PVGGLLPQPEWTAWDQ-TVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW------- 732 (1081)
Q Consensus 667 ~~i~~~~~~~~~-l~~~~~~~~k~v~w~~-~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w------- 732 (1081)
+|+|..--...+ -.+.+..|++-|...- |+|++.+. ....++|.|||.. |.|.+.|...-.....
T Consensus 331 VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~-G~L~~~Lr~~r~~~~~~~~~~~~ 409 (609)
T KOG0200|consen 331 VAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEH-GDLLEFLRKKRVTESIDGSGVFP 409 (609)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccC-CcHHHHHHhccccccccccCCCc
Confidence 677764332222 1122556778888877 99999988 2469999999999 9988777652200011
Q ss_pred --------EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccC
Q 001416 733 --------HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLR 803 (1081)
Q Consensus 733 --------~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~ 803 (1081)
..-.+| ...|++||+||+...+ |.-|--.|.++..-=++||+||||-.-...+.....+..
T Consensus 410 ~~~~~L~~~dLlsf--------a~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~-- 479 (609)
T KOG0200|consen 410 NERDALTTKDLLSF--------AYQIANGMEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSS-- 479 (609)
T ss_pred cccCCcCHHHHHHH--------HHHHHHHHHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCC--
Confidence 111222 3467789999999996 999999999999999999999999863221111110000
Q ss_pred CcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeee
Q 001416 804 PPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGV 882 (1081)
Q Consensus 804 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~ 882 (1081)
.+ |+.-.|.|||-..... -+.+.|||||||.++|+++ |+.||.. .+ +..+++. -+
T Consensus 480 ~~-----~LP~kWmApEsl~~~~-----------ft~kSDVWSfGI~L~EifsLG~~PYp~--~~-----~~~~l~~-~l 535 (609)
T KOG0200|consen 480 AG-----TLPVKWMAPESLFDRV-----------FTSKSDVWSFGILLWEIFTLGGTPYPG--IP-----PTEELLE-FL 535 (609)
T ss_pred CC-----ccceeecCHHHhccCc-----------ccccchhhHHHHHHHHHhhCCCCCCCC--CC-----cHHHHHH-HH
Confidence 00 0122399999876532 2334699999999999975 4445532 11 0011100 01
Q ss_pred ecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 883 ~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+++ +.+..|. -|..+.-++|+.||.++|..||.|..+..++..+
T Consensus 536 ~~G-------------~r~~~P~---~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~ 579 (609)
T KOG0200|consen 536 KEG-------------NRMEQPE---HCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH 579 (609)
T ss_pred hcC-------------CCCCCCC---CCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence 111 1111111 3555556999999999999999999999999985
No 304
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=98.97 E-value=9.8e-12 Score=139.11 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=135.5
Q ss_pred CccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc------------
Q 001416 666 PQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA------------ 727 (1081)
Q Consensus 666 ~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~------------ 727 (1081)
.+++|.+..... .-..+...|+..++-..|.|++.+. ....+++++||+. |+|.+.+....
T Consensus 32 ~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~ 110 (290)
T cd05045 32 TVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKY-GSLRSFLRESRKVGPSYLGSDGN 110 (290)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCC-CCHHHHHHhcCCccccccccccc
Confidence 366666543321 1122344456666667899999987 3567899999998 88887643210
Q ss_pred -----------cceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchh
Q 001416 728 -----------TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTA 795 (1081)
Q Consensus 728 -----------~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~ 795 (1081)
..++|.....+ +..+..|+.|||...+ |+.++++|+++++.+.+|++|||+...-.....
T Consensus 111 ~~~~~~~~~~~~~l~~~~~~~i--------~~~i~~~l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~ 182 (290)
T cd05045 111 RNSSYLDNPDERALTMGDLISF--------AWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDS 182 (290)
T ss_pred cccccccCccccccCHHHHHHH--------HHHHHHHHHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCccc
Confidence 01111111122 4467789999999888 999999999999999999999998653211111
Q ss_pred hhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCC
Q 001416 796 AQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPI 874 (1081)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 874 (1081)
.........+.. +.|||... +...+.+.||||||++++|+++ |..|+. ..++++..
T Consensus 183 ~~~~~~~~~~~~--------y~apE~~~-----------~~~~~~~~Di~slG~~l~el~t~g~~p~~--~~~~~~~~-- 239 (290)
T cd05045 183 YVKRSKGRIPVK--------WMAIESLF-----------DHIYTTQSDVWSFGVLLWEIVTLGGNPYP--GIAPERLF-- 239 (290)
T ss_pred hhcccCCCCCcc--------ccCHHHHc-----------cCCcchHhHHHHHHHHHHHHHhcCCCCCC--CCCHHHHH--
Confidence 000000011111 55666431 1112345799999999999887 555553 11111100
Q ss_pred CCcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 875 GPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 875 ~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.. .... +.... .-.+.....+++..|+..+|..||.+..|.+.|+++
T Consensus 240 ---~~--~~~~-------------~~~~~---~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~ 286 (290)
T cd05045 240 ---NL--LKTG-------------YRMER---PENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKM 286 (290)
T ss_pred ---HH--HhCC-------------CCCCC---CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHH
Confidence 00 0000 00000 012344566899999999999999999999999876
No 305
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=98.97 E-value=3.1e-12 Score=144.16 Aligned_cols=225 Identities=11% Similarity=0.004 Sum_probs=140.2
Q ss_pred CccEEEEeecc-ccccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEeeee
Q 001416 666 PQNFQLYSWET-FQPVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQL 737 (1081)
Q Consensus 666 ~~~i~~~~~~~-~~l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~ 737 (1081)
.+++|.+.... ......+..|++.++-. +|.|++.+. ....++++||++. |+|.+.+... ...+.+.....
T Consensus 67 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~l~~~~~~~ 145 (302)
T cd05055 67 KVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCY-GDLLNFLRRKRESFLTLEDLLS 145 (302)
T ss_pred EEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCCC-CcHHHHHHhCCCCCCCHHHHHH
Confidence 36777765432 11122244566666666 699999887 4568999999998 8888765431 11244444344
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+..|+.|||...+ |+.++++|++++....+|++|||+...-................ .|
T Consensus 146 i--------~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~--------~y 209 (302)
T cd05055 146 F--------SYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPV--------KW 209 (302)
T ss_pred H--------HHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCccc--------cc
Confidence 4 5678899999999888 99999999999999999999999865321111000000000111 26
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
.|||..... ..+.+.||||+|++++++++ |..|+.......+... . ...+
T Consensus 210 ~aPE~~~~~-----------~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~----~----~~~~---------- 260 (302)
T cd05055 210 MAPESIFNC-----------VYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYK----L----IKEG---------- 260 (302)
T ss_pred CCHhhhccC-----------CCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHH----H----HHcC----------
Confidence 788865321 12345799999999999886 6666542211100000 0 0000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.+... .........+++++|+..+|..||++..+...|+++
T Consensus 261 ---~~~~~---~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 261 ---YRMAQ---PEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred ---CcCCC---CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 00000 001234567899999999999999999999998864
No 306
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=98.97 E-value=7.3e-12 Score=143.33 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=96.2
Q ss_pred EeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcC
Q 001416 748 VFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLT 826 (1081)
Q Consensus 748 ~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 826 (1081)
..++.|+.|||...+ |+.+|++|+++|....+|++|||+...-..............+.. |.|||....
T Consensus 180 ~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~-- 249 (337)
T cd05054 180 FQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK--------WMAPESIFD-- 249 (337)
T ss_pred HHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCcc--------ccCcHHhcC--
Confidence 467889999999998 999999999999999999999998764211100000001111222 778886532
Q ss_pred CCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcc
Q 001416 827 MPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPG 905 (1081)
Q Consensus 827 ~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~ 905 (1081)
.....+.||||+|++++|+++ |..|+.....+ +... .....+. . ..
T Consensus 250 ---------~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~-~~~~-------~~~~~~~-------------~---~~ 296 (337)
T cd05054 250 ---------KVYTTQSDVWSFGVLLWEIFSLGASPYPGVQID-EEFC-------RRLKEGT-------------R---MR 296 (337)
T ss_pred ---------CCCCccccHHHHHHHHHHHHHcCCCCCCCCCcc-HHHH-------HHHhccC-------------C---CC
Confidence 112345799999999999886 55565422111 0000 0000000 0 00
Q ss_pred cceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 906 IRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
....+.....+++.+||..+|..||.+..|.+.|+.+
T Consensus 297 ~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~ 333 (337)
T cd05054 297 APEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDL 333 (337)
T ss_pred CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0112344567899999999999999999999988764
No 307
>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=98.97 E-value=3.1e-12 Score=140.96 Aligned_cols=213 Identities=6% Similarity=-0.081 Sum_probs=131.7
Q ss_pred CccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 666 PQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 666 ~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
.+++|.++-+..+.......+.+.++-.+|.|++.+. ....++|+|||+. |+|...+......+.+.....+
T Consensus 34 ~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~i-- 110 (262)
T cd05077 34 KVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEF-GPLDLFMHRKSDVLTTPWKFKV-- 110 (262)
T ss_pred eEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEecccC-CCHHHHHHhcCCCCCHHHHHHH--
Confidence 3667776554433332334445566667899999987 3568999999998 8887665432233444444444
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHh-------hhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAV-------AEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv-------~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
+..++.||.|||...+ |+.+++.|++++..-. +|+.|||+...-.... ......
T Consensus 111 ------~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~------~~~~~~------ 172 (262)
T cd05077 111 ------AKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQ------ECVERI------ 172 (262)
T ss_pred ------HHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCcc------cccccc------
Confidence 6689999999999888 9999999999975443 7999999764311100 001111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEe
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
.|+|||..... ...+.+.||||||++++|++. |..|+....+. +.. ....+
T Consensus 173 --~y~aPE~~~~~----------~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~--~~~--------~~~~~------ 224 (262)
T cd05077 173 --PWIAPECVEDS----------KNLSIAADKWSFGTTLWEICYNGEIPLKDKTLA--EKE--------RFYEG------ 224 (262)
T ss_pred --cccChhhhcCC----------CCCCchhHHHHHHHHHHHHHhCCCCCCCCcchh--HHH--------HHHhc------
Confidence 27888875311 112334799999999999864 43333211110 000 00000
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHH
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQF 938 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~ 938 (1081)
.+++.. .......+++..||..+|..||++..|.+.
T Consensus 225 ------~~~~~~-----~~~~~~~~li~~cl~~dp~~Rp~~~~il~~ 260 (262)
T cd05077 225 ------QCMLVT-----PSCKELADLMTHCMNYDPNQRPFFRAIMRD 260 (262)
T ss_pred ------CccCCC-----CChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence 000000 112345689999999999999999998654
No 308
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=98.97 E-value=7.2e-12 Score=143.28 Aligned_cols=220 Identities=6% Similarity=-0.107 Sum_probs=139.2
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+..+... ..+.+..|.+.+.-..|.|++.+. ..+.++|+|||+. |+|.+.+.+. ..+.+...
T Consensus 26 ~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g-~~L~~~l~~~-~~l~~~~~ 103 (333)
T cd05600 26 GEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPG-GDFRTLLNNL-GVLSEDHA 103 (333)
T ss_pred CCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCC-CCHHHHHHHc-CCCCHHHH
Confidence 456899998876432 223344566666667799998887 5678999999998 8998876542 12222221
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+..|+.|||...+ |+.+|++|++++..-.+|++|||+......... .... ..
T Consensus 104 ~~~--------~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~-----~~~g--------t~ 162 (333)
T cd05600 104 RFY--------MAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYAN-----SVVG--------SP 162 (333)
T ss_pred HHH--------HHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcccccccC-----Cccc--------Cc
Confidence 122 4577889999999888 999999999999999999999998753211000 0001 11
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCC--CCCCCCCCcEEeeeecCeEEEEec
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPT--EQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
.|.|||+.... .-+.+.||||+|++++|+++|..|+....... +.+...... ..
T Consensus 163 ~y~aPE~~~~~-----------~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~----~~--------- 218 (333)
T cd05600 163 DYMAPEVLRGK-----------GYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKET----LQ--------- 218 (333)
T ss_pred cccChhHhcCC-----------CCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhcccc----cc---------
Confidence 26788875321 22345799999999999999888875322110 000000000 00
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
.|.. ............+++..|+..+|..||....+.+
T Consensus 219 ------~~~~-~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~ 256 (333)
T cd05600 219 ------RPVY-DDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKN 256 (333)
T ss_pred ------CCCC-CccccccCHHHHHHHHHHhhChhhhcCCHHHHHh
Confidence 0000 0001233455668999999988899998777753
No 309
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=98.96 E-value=5.8e-12 Score=151.01 Aligned_cols=218 Identities=7% Similarity=-0.099 Sum_probs=135.8
Q ss_pred CccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc---ccceeeEeeee
Q 001416 666 PQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY---ATGAVWHRRQL 737 (1081)
Q Consensus 666 ~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~---~~~~~w~~~~~ 737 (1081)
.+++|+..-....-......|+..+.=.+|.|++.+. ..+.++|+|||+. |+|.+.+.+. ...+.+.....
T Consensus 95 ~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~g-g~L~~~l~~~~~~~~~l~~~~~~~ 173 (478)
T PTZ00267 95 KVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSG-GDLNKQIKQRLKEHLPFQEYEVGL 173 (478)
T ss_pred EEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCC-CCHHHHHHHHHhccCCCCHHHHHH
Confidence 3666665433222222344577777788999999987 5789999999999 9998765321 11122221112
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ ...+..|+.|||...| |+.+|++|++++....+|++|||+................... ..|
T Consensus 174 i--------~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt--------~~y 237 (478)
T PTZ00267 174 L--------FYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGT--------PYY 237 (478)
T ss_pred H--------HHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCC--------ccc
Confidence 2 4467889999999888 9999999999999999999999987642211100000000011 126
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||+.... .-+.+.||||+|++++|+++|..|+...... ++. . .+..+ .
T Consensus 238 ~aPE~~~~~-----------~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~--~~~-----~--~~~~~---------~- 287 (478)
T PTZ00267 238 LAPELWERK-----------RYSKKADMWSLGVILYELLTLHRPFKGPSQR--EIM-----Q--QVLYG---------K- 287 (478)
T ss_pred cCHhHhCCC-----------CCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH--HHH-----H--HHHhC---------C-
Confidence 788875321 1234579999999999999988877421110 000 0 00000 0
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
++ .+.+.+.....+++..|+..+|..||....+.
T Consensus 288 --~~----~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l 321 (478)
T PTZ00267 288 --YD----PFPCPVSSGMKALLDPLLSKNPALRPTTQQLL 321 (478)
T ss_pred --CC----CCCccCCHHHHHHHHHHhccChhhCcCHHHHH
Confidence 00 00112344567899999999999999988874
No 310
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=98.96 E-value=5.8e-12 Score=141.15 Aligned_cols=223 Identities=10% Similarity=0.013 Sum_probs=144.1
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
|..+++|.+..++.........|++.++..+|.|++.+. ....++|++|++. ++|...+.+....+.+.....+
T Consensus 37 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~l~~~~~~~~ 115 (292)
T cd06644 37 GALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPG-GAVDAIMLELDRGLTEPQIQVI 115 (292)
T ss_pred CceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCC-CcHHHHHHhhcCCCCHHHHHHH
Confidence 445788888776666556666688888899999999987 4568999999998 8877655432333444433333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+++|+.|||...+ |+.++++|++++....+|++|||+............ ... ...+|.
T Consensus 116 --------~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~--~~~--------~~~~y~ 177 (292)
T cd06644 116 --------CRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRD--SFI--------GTPYWM 177 (292)
T ss_pred --------HHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccccccc--eec--------CCcccc
Confidence 5677889999999888 999999999999999999999998653211100000 000 112378
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCC--CCCC-CCCCcEEeeeecCeEEEEeccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPT--EQKR-PIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~--~~~~-~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
|||+....... ....+.+.||||+|++++++++|..|+....... ..+. ...|.
T Consensus 178 aPE~~~~~~~~------~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~----------------- 234 (292)
T cd06644 178 APEVVMCETMK------DTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPT----------------- 234 (292)
T ss_pred Cceeecccccc------CCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCcc-----------------
Confidence 88876321110 0112344799999999999998887764322100 0000 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
+. ..-.......++++.||..+|..||++..|.+
T Consensus 235 ------~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 235 ------LS---QPSKWSMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred ------CC---CCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 00 00022334568999999999999999988843
No 311
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=98.96 E-value=2.2e-11 Score=140.43 Aligned_cols=222 Identities=9% Similarity=-0.060 Sum_probs=139.9
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|+.++||.+...... ....+..|++.++-.+|.|++.+. ..+.++|+|||.. |+|.+...... .....
T Consensus 99 ~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~-----~~~~~ 172 (353)
T PLN00034 99 GRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDG-GSLEGTHIADE-----QFLAD 172 (353)
T ss_pred CCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCC-CcccccccCCH-----HHHHH
Confidence 556899887544322 223356677788888999999887 4578899999998 88875432211 11111
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ |+.+|.+|++++..-.+|++|||+...-........ .... .-.|
T Consensus 173 i--------~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~--~~~g--------t~~y 234 (353)
T PLN00034 173 V--------ARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCN--SSVG--------TIAY 234 (353)
T ss_pred H--------HHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceeccccccccc--cccc--------Cccc
Confidence 2 4578889999999888 999999999999999999999998764221111000 0001 1127
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||+..... ..+...+.+.||||||++++|++.|..||...... .+. .. ......
T Consensus 235 ~aPE~~~~~~------~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~--~~~---~~-~~~~~~------------ 290 (353)
T PLN00034 235 MSPERINTDL------NHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG--DWA---SL-MCAICM------------ 290 (353)
T ss_pred cCcccccccc------ccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc--cHH---HH-HHHHhc------------
Confidence 8898753210 01222334579999999999999998887522211 000 00 000000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
. ..+.....+.....++++.|+..+|..||+...|.+
T Consensus 291 -~---~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~ 327 (353)
T PLN00034 291 -S---QPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQ 327 (353)
T ss_pred -c---CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 001111234455679999999999999999887753
No 312
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=98.96 E-value=5.8e-12 Score=143.95 Aligned_cols=166 Identities=8% Similarity=-0.072 Sum_probs=112.1
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|...-+... ...++..|++.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.+.....
T Consensus 30 ~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~~~~~ 107 (333)
T cd06650 30 GLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG-GSLDQVLKKA-GRIPEQILGK 107 (333)
T ss_pred CcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCC-CcHHHHHHHc-CCCCHHHHHH
Confidence 445677766543211 122355677777778899999887 4578999999998 9998876542 2222222222
Q ss_pred eEeccCceEEEeeeCCccccchh-hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVE-TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s-~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
+ +..+++|+.|||.. .+ |+.+|++|++++..-.+|++|||+.......... .... ...
T Consensus 108 ~--------~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~----~~~~--------~~~ 167 (333)
T cd06650 108 V--------SIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN----SFVG--------TRS 167 (333)
T ss_pred H--------HHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccc----cCCC--------Ccc
Confidence 2 44678999999974 46 9999999999999999999999986532111000 0011 113
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||+... ...+.+.||||+|+++++++.|..|+.
T Consensus 168 y~aPE~~~~-----------~~~~~~~DvwslG~il~~l~~g~~p~~ 203 (333)
T cd06650 168 YMSPERLQG-----------THYSVQSDIWSMGLSLVEMAIGRYPIP 203 (333)
T ss_pred ccCHHHhcC-----------CCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 788887632 112345799999999999999888775
No 313
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=98.96 E-value=5.3e-12 Score=139.28 Aligned_cols=228 Identities=8% Similarity=-0.052 Sum_probs=143.4
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc---cccee
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY---ATGAV 731 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~---~~~~~ 731 (1081)
.|+.+++|.+...... ...++..|++.++-.+|.|++.+. ....+++++|++. ++|.+.+... ...+.
T Consensus 26 ~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~ 104 (267)
T cd08229 26 DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADA-GDLSRMIKHFKKQKRLIP 104 (267)
T ss_pred CCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCC-CCHHHHHHHhhccCCCCC
Confidence 3556788876543221 111234466666667899988877 3568899999998 8888765421 11222
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVV 810 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1081)
|.....+ +..+.+|+.|||...+ |+.++++|++++..-.+|++|||+............ ...
T Consensus 105 ~~~~~~~--------~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~--~~~------- 167 (267)
T cd08229 105 EKTVWKY--------FVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH--SLV------- 167 (267)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccc--ccc-------
Confidence 2222222 4578899999999888 999999999999999999999998654322111100 011
Q ss_pred hhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEE
Q 001416 811 RLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLI 890 (1081)
Q Consensus 811 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 890 (1081)
....|.|||..... ..+.+.|+||+|++++++..|..|+.....+..+.... +...
T Consensus 168 -~~~~~~ape~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~-------~~~~----- 223 (267)
T cd08229 168 -GTPYYMSPERIHEN-----------GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKK-------IEQC----- 223 (267)
T ss_pred -CCcCccCHHHhcCC-----------CccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhh-------hhcC-----
Confidence 12237788875321 12344799999999999999888875322210000000 0000
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...++ ..-.......+++..||..+|..||++..|-..+++|
T Consensus 224 ------~~~~~----~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 224 ------DYPPL----PSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred ------CCCCC----CcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 00001 0112344677999999999999999999998888775
No 314
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=98.96 E-value=5.9e-12 Score=141.38 Aligned_cols=219 Identities=9% Similarity=-0.016 Sum_probs=142.7
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.|..+++|.+..++......+..|.+.++-.+|.|++.+. ....++|++|++. ++|.+.+.. ..+.|.....
T Consensus 43 ~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~--~~l~~~~~~~ 119 (296)
T cd06655 43 TGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAG-GSLTDVVTE--TCMDEAQIAA 119 (296)
T ss_pred CCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCC-CcHHHHHHh--cCCCHHHHHH
Confidence 4566899988766555444455677777888999999988 4678999999999 898876543 2344443333
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+++|+.|||...+ ||.++.+|++++....+|++|||+...-....... .... ....|
T Consensus 120 i--------~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~------~~~~----~~~~y 181 (296)
T cd06655 120 V--------CRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKR------STMV----GTPYW 181 (296)
T ss_pred H--------HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccC------CCcC----CCccc
Confidence 3 5567889999999999 99999999999999999999999754311110000 0000 11236
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||..... ..+.+.||||+|++++++++|..|+...... + .+.. ....
T Consensus 182 ~aPE~~~~~-----------~~~~~~Dv~slGvil~~lltg~~pf~~~~~~-~------~~~~--~~~~----------- 230 (296)
T cd06655 182 MAPEVVTRK-----------AYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-R------ALYL--IATN----------- 230 (296)
T ss_pred cCcchhcCC-----------CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-H------HHHH--HHhc-----------
Confidence 778765321 1233579999999999999988777421110 0 0000 0000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
...++.. ...+.....++++.||..+|..||.+..|.
T Consensus 231 ~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rpt~~~il 267 (296)
T cd06655 231 GTPELQN---PEKLSPIFRDFLNRCLEMDVEKRGSAKELL 267 (296)
T ss_pred CCcccCC---cccCCHHHHHHHHHHhhcChhhCCCHHHHh
Confidence 0000000 112344566899999999999999998875
No 315
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=98.95 E-value=4.6e-12 Score=139.86 Aligned_cols=171 Identities=7% Similarity=-0.056 Sum_probs=113.4
Q ss_pred CCCCccEEEEeecccc-----ccCCCCCCcceeeecccCceEEEee-------eeEEEEEecCcccccccccccccccce
Q 001416 663 EAAPQNFQLYSWETFQ-----PVGGLLPQPEWTAWDQTVEYCAFAY-------QHYIVISSLCPQYRYLGDVAIPYATGA 730 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~-----l~~~~~~~~k~v~w~~~~~~~~~~~-------~~~~~v~~y~~~~gsl~d~~~~~~~~~ 730 (1081)
.|..+++|.+.+.... .+..+..|+..++=.+|.|++.+.. ...+++++|++. ++|.+.+.+. ..+
T Consensus 26 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~-~~L~~~l~~~-~~l 103 (266)
T cd06651 26 TGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPG-GSVKDQLKAY-GAL 103 (266)
T ss_pred CCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCC-CcHHHHHHHc-CCC
Confidence 3556888887765322 2233445666677778999988771 346789999998 8888776542 123
Q ss_pred eeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeeccc-chhhhcccccCCcchh
Q 001416 731 VWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESS-QTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 731 ~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~-~~~~~~~~~~~~~~~~ 808 (1081)
.+.....+ ...+..||.|||...+ ||.++++|++++..+.+|++|||+...-.. ...............
T Consensus 104 ~~~~~~~~--------~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~- 174 (266)
T cd06651 104 TESVTRKY--------TRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPY- 174 (266)
T ss_pred CHHHHHHH--------HHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCcccc-
Confidence 33333333 5678899999999888 999999999999999999999998653111 000000000011112
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||.... ...+.+.||||+|++++++++|..|+.
T Consensus 175 -------y~aPE~~~~-----------~~~~~~~Dv~slG~i~~el~~g~~pf~ 210 (266)
T cd06651 175 -------WMSPEVISG-----------EGYGRKADVWSLGCTVVEMLTEKPPWA 210 (266)
T ss_pred -------ccCHHHhCC-----------CCCCchhhhHHHHHHHHHHHHCCCCcc
Confidence 667776521 112345799999999999999888875
No 316
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=98.95 E-value=1.3e-11 Score=138.51 Aligned_cols=233 Identities=7% Similarity=-0.049 Sum_probs=137.0
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc----------
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA---------- 727 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~---------- 727 (1081)
+..+++|.+...... ....+..|++.+.-.+|.|++.+. .+..++++||++. ++|.+.+.+..
T Consensus 46 ~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~ 124 (296)
T cd05051 46 PVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMEN-GDLNQFLQKHVAETSGLACNS 124 (296)
T ss_pred ceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecCCCcEEEEecCCC-CCHHHHHHhcccccccccccC
Confidence 445788877644321 122244466666677899998877 3678999999998 88887654321
Q ss_pred cceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcc
Q 001416 728 TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPM 806 (1081)
Q Consensus 728 ~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~ 806 (1081)
..+.+.....+ +.+++.|+.|||...+ |+.+|++|++++..+.+|++|||+...-..............+.
T Consensus 125 ~~~~~~~~~~~--------~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~ 196 (296)
T cd05051 125 KSLSFSTLLYM--------ATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPI 196 (296)
T ss_pred CCCCHHHHHHH--------HHHHHHHHHHHHHcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCc
Confidence 02223222222 4578889999999998 99999999999999999999999875311110000000000011
Q ss_pred hhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCe
Q 001416 807 LQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGV 886 (1081)
Q Consensus 807 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 886 (1081)
. |.|||.... ...+.+.||||||++++|+++++.......++..+....... .....
T Consensus 197 ~--------y~aPE~~~~-----------~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~---~~~~~- 253 (296)
T cd05051 197 R--------WMAWESVLL-----------GKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGH---FFRDD- 253 (296)
T ss_pred e--------ecCHHHhhc-----------CCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHh---ccccc-
Confidence 1 556665421 113445799999999998876332222122221000000000 00000
Q ss_pred EEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 887 LWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 887 ~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
.. . ..+.. ...++....+++..|+..+|..||+...|...|+
T Consensus 254 ------~~-~--~~~~~---~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 254 ------GR-Q--IYLPR---PPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred ------cc-c--ccCCC---ccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 00 0 00000 0123456789999999999999999999988875
No 317
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=98.95 E-value=1.5e-12 Score=146.00 Aligned_cols=220 Identities=11% Similarity=-0.008 Sum_probs=141.1
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.+..++||.++-........+..|++.++=.+|.|++.+. .+..++|+|||+. ++|.+++.+. .+.+.....
T Consensus 46 ~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~--~l~~~~~~~ 122 (292)
T cd06658 46 TGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG-GALTDIVTHT--RMNEEQIAT 122 (292)
T ss_pred CCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC-CcHHHHHhcC--CCCHHHHHH
Confidence 4556899987654443333355566777777899988876 5788999999998 8888876442 233332222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+..||.|||...+ ||.++++|++++....+|++|||+............ .... ...|
T Consensus 123 ~--------~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~--~~~~--------~~~y 184 (292)
T cd06658 123 V--------CLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRK--SLVG--------TPYW 184 (292)
T ss_pred H--------HHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCc--eeec--------Cccc
Confidence 3 5567889999999988 999999999999999999999998753221111100 0011 1237
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||+.... ..+.++||||||++++|++.|..|+...... +... . ....
T Consensus 185 ~aPE~~~~~-----------~~~~~~Dv~slGvil~el~~g~~p~~~~~~~-~~~~------~--~~~~----------- 233 (292)
T cd06658 185 MAPEVISRL-----------PYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL-QAMR------R--IRDN----------- 233 (292)
T ss_pred cCHHHHccC-----------CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHH------H--HHhc-----------
Confidence 788875321 1233579999999999999988877421110 0000 0 0000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
++...+ ..........+++..|+..+|..||+...|..
T Consensus 234 --~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~ 271 (292)
T cd06658 234 --LPPRVK-DSHKVSSVLRGFLDLMLVREPSQRATAQELLQ 271 (292)
T ss_pred --CCCccc-cccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 000000 01123345668899999999999999988763
No 318
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=98.95 E-value=8.2e-12 Score=138.76 Aligned_cols=217 Identities=8% Similarity=-0.009 Sum_probs=139.5
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
+..+++|.++.+.. .....+..|++.++-..|.|++.+. ....++|+||++. |+|.+.+... .+.+.....
T Consensus 29 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~--~l~~~~~~~ 105 (277)
T cd06640 29 QQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGG-GSALDLLRAG--PFDEFQIAT 105 (277)
T ss_pred CEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCC-CcHHHHHhcC--CCCHHHHHH
Confidence 44578988875432 2222344566666677899999987 4678999999999 8988766532 233222222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ |+.++++|++++.+-.++++|||+...-........ .. ....+|
T Consensus 106 ~--------~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~-----~~-----~~~~~y 167 (277)
T cd06640 106 M--------LKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN-----TF-----VGTPFW 167 (277)
T ss_pred H--------HHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccc-----cc-----cCcccc
Confidence 2 4567889999999888 999999999999999999999998754221110000 00 012237
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||+.... ..+.+.||||||++++++++|..|+.... + ....... ..+
T Consensus 168 ~apE~~~~~-----------~~~~~~Dv~slG~il~el~tg~~p~~~~~-~------~~~~~~~--~~~----------- 216 (277)
T cd06640 168 MAPEVIQQS-----------AYDSKADIWSLGITAIELAKGEPPNSDMH-P------MRVLFLI--PKN----------- 216 (277)
T ss_pred cCHhHhccC-----------CCccHHHHHHHHHHHHHHHHCCCCCCCcC-h------HhHhhhh--hcC-----------
Confidence 788875321 12345799999999999998877764211 0 0000000 000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
.++.+...+.....++++.||..+|..||.+..|.+
T Consensus 217 -----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06640 217 -----NPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLK 252 (277)
T ss_pred -----CCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHh
Confidence 011112233445678999999999999999998843
No 319
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=98.95 E-value=7.7e-12 Score=139.40 Aligned_cols=226 Identities=11% Similarity=-0.032 Sum_probs=136.0
Q ss_pred CCCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc--------
Q 001416 663 EAAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT-------- 728 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~-------- 728 (1081)
.+..+++|...-.. ..-...+..|+..++-.+|.|++.+. ....++++||++. |+|.+.+.....
T Consensus 33 ~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~ 111 (283)
T cd05090 33 HAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQ-GDLHEFLIMRSPHSDVGCSS 111 (283)
T ss_pred CcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCC-CcHHHHHHhcCCCCcccccc
Confidence 34456777654211 11112244466667777899999887 3578999999998 888876532100
Q ss_pred --------ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcc
Q 001416 729 --------GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDR 799 (1081)
Q Consensus 729 --------~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~ 799 (1081)
.+++.....+ ..++++|+.|||...+ |+.+|++|++++..-.+|++|||+...-.........
T Consensus 112 ~~~~~~~~~~~~~~~~~i--------~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~ 183 (283)
T cd05090 112 DEDGTVKSSLDHGDFLHI--------AIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQ 183 (283)
T ss_pred ccccccccccCHHHHHHH--------HHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCCcceecc
Confidence 0111111112 4468889999999888 9999999999999999999999987642111000000
Q ss_pred cccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcE
Q 001416 800 IKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLV 878 (1081)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~ 878 (1081)
.....+. .|.|||.... ...+.+.||||+|++++|+++ |--|+.- .+.+.+..
T Consensus 184 ~~~~~~~--------~y~aPE~~~~-----------~~~~~~~Dv~slG~il~el~~~g~~p~~~--~~~~~~~~----- 237 (283)
T cd05090 184 PKSLLPI--------RWMPPEAIMY-----------GKFSSDSDIWSFGVVLWEIFSFGLQPYYG--FSNQEVIE----- 237 (283)
T ss_pred cCCCccc--------eecChHHhcc-----------CCCCchhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHH-----
Confidence 0000011 1567776421 112345799999999999887 4334421 11000000
Q ss_pred EeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 879 VVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 879 ~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
.+... ..+. ....+.....+++..||..+|..||.+..|.+.|++
T Consensus 238 --~~~~~-------------~~~~---~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 238 --MVRKR-------------QLLP---CSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred --HHHcC-------------CcCC---CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence 00000 0000 011345566789999999999999999999998875
No 320
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=98.95 E-value=7.5e-12 Score=138.50 Aligned_cols=224 Identities=7% Similarity=0.020 Sum_probs=138.6
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeec-ccCceEEEee-----------eeEEEEEecCccccccccccccc-ccce
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWD-QTVEYCAFAY-----------QHYIVISSLCPQYRYLGDVAIPY-ATGA 730 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~-~~~~~~~~~~-----------~~~~~v~~y~~~~gsl~d~~~~~-~~~~ 730 (1081)
+..+++|.++..... ...+..|+..+... +|.|++.+.. +..++++|||+. |+|.+.+... ...+
T Consensus 31 ~~~~aik~~~~~~~~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~-~~L~~~l~~~~~~~l 108 (272)
T cd06637 31 GQLAAIKVMDVTGDE-EEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGA-GSVTDLIKNTKGNTL 108 (272)
T ss_pred CcEEEEEEEEcCCcc-HHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCC-CcHHHHHHhccCCCC
Confidence 455788888764322 12244455555665 6899999871 357899999998 8988776542 1123
Q ss_pred eeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 731 VWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 731 ~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
.|.....+ +..+..|+.|||...+ |+.++++|++++.+-.+|++|||+........... .....
T Consensus 109 ~~~~~~~~--------~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~--~~~~g----- 173 (272)
T cd06637 109 KEEWIAYI--------CREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRR--NTFIG----- 173 (272)
T ss_pred CHHHHHHH--------HHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceecccccccC--Ccccc-----
Confidence 33332233 5578899999999998 99999999999999999999999865421110000 00001
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEE
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWL 889 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 889 (1081)
.-.|.|||+......+. ..-+.+.||||+|++++++++|..|+....-. ...+.. ....
T Consensus 174 ---~~~y~aPE~~~~~~~~~------~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~-------~~~~~~-~~~~---- 232 (272)
T cd06637 174 ---TPYWMAPEVIACDENPD------ATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM-------RALFLI-PRNP---- 232 (272)
T ss_pred ---cccccCHhHhccccCcC------CCCCchhhHHHHHHHHHHHHhCCCCccccCHH-------HHHHHH-hcCC----
Confidence 11277888763211111 11223579999999999999988887421110 000000 0000
Q ss_pred EeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 890 IDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 890 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
........+.....+++.+||..+|..||....|.+
T Consensus 233 ------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 233 ------------APRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred ------------CCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 000111134445679999999999999999887743
No 321
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.6e-07 Score=111.34 Aligned_cols=154 Identities=15% Similarity=0.044 Sum_probs=99.1
Q ss_pred eeecccCCCCCeEEEEEecCc---EEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC-CC--eEEEE
Q 001416 123 FASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVL 196 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~---~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~-Dg--~I~lw 196 (1081)
+.+..|+|||+.++++.+.++ +.+||..+++... +..+........| +|+|+.|+..++ +| .|.+|
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---Lt~~~~~~~~~~~-----spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR---LTDSPAIDTSPSY-----SPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE---ccCCCCccCceeE-----cCCCCEEEEEECCCCCCeEEEE
Confidence 456789999987766665433 4457887764333 2334445667889 789999888774 33 68888
Q ss_pred EcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCC---CcEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 197 d~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~D---g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
|+.+++.. .+. .+...+....| +|+|+.++..+.+ ..|.+||+.++.. .. +. +...+....|+|
T Consensus 320 d~~g~~~~-~lt-~~~~~~~~~~~---SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~------lt-~~~~~~~p~~sp 386 (435)
T PRK05137 320 NADGSNPR-RIS-FGGGRYSTPVW---SPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RI------LT-SGFLVEGPTWAP 386 (435)
T ss_pred ECCCCCeE-Eee-cCCCcccCeEE---CCCCCEEEEEEcCCCceEEEEEECCCCce-Ee------cc-CCCCCCCCeECC
Confidence 88765543 333 23445566664 8999999877654 3578888765431 11 11 122466789999
Q ss_pred ecCCCCEEEEEECC------CeEEEEECCCCce
Q 001416 274 VMGGSPQLITIGAD------KTLAIWDTVSFKE 300 (1081)
Q Consensus 274 ~~~~~~~Lvsgs~D------g~V~iWDl~t~~~ 300 (1081)
+++.|+..+.+ ..+.++|+..++.
T Consensus 387 ---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 387 ---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ---CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 88887765543 2577888866544
No 322
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=98.94 E-value=1e-11 Score=138.00 Aligned_cols=224 Identities=10% Similarity=-0.071 Sum_probs=133.6
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc--------
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG-------- 729 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~-------- 729 (1081)
+..+++|.+.-... ....++..|...++-.+|.|++.+. ....++|+|||+. |+|.+.+.+....
T Consensus 36 ~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~ 114 (277)
T cd05062 36 ETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTR-GDLKSYLRSLRPEMENNPVQA 114 (277)
T ss_pred eeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCC-CCHHHHHHHcCcccccccccc
Confidence 34578887643211 1111233455556667899999887 3468999999999 8988766431111
Q ss_pred -eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcch
Q 001416 730 -AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPML 807 (1081)
Q Consensus 730 -~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~ 807 (1081)
+.|.....+ +..++.|+.|||...+ |+.+|++|+++++...+|++|||+...-...........-..+.
T Consensus 115 ~~~~~~~~~~--------~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~- 185 (277)
T cd05062 115 PPSLKKMIQM--------AGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV- 185 (277)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCH-
Confidence 111111111 3467889999999888 99999999999999999999999864211100000000000011
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCC-cceeeecCCCCCCCCCCCCcEEeeeecCe
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGG-GVAVAVTRFPTEQKRPIGPLVVVGVKDGV 886 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 886 (1081)
.+.|||.... ...+.+.||||+|++++|++++ ..|+.. .+.++. .- -+..+.
T Consensus 186 -------~y~aPE~~~~-----------~~~~~~~Di~slG~~l~el~~~~~~p~~~--~~~~~~-----~~--~~~~~~ 238 (277)
T cd05062 186 -------RWMSPESLKD-----------GVFTTYSDVWSFGVVLWEIATLAEQPYQG--MSNEQV-----LR--FVMEGG 238 (277)
T ss_pred -------hhcChhHhhc-----------CCcCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHH-----HH--HHHcCC
Confidence 1567776531 1123457999999999999874 444421 110000 00 000000
Q ss_pred EEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 887 LWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 887 ~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
..+ ..-.++....+++..|+..+|..||....+.+.|+
T Consensus 239 -----------~~~-----~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 239 -----------LLD-----KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred -----------cCC-----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 000 01134556778999999999999999999987765
No 323
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=98.94 E-value=5.9e-12 Score=137.86 Aligned_cols=218 Identities=9% Similarity=-0.007 Sum_probs=138.6
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
++.+++|.+.-... ...+..|++.++-.+|.|++.+. .+..+++++||+. ++|.+.+......+.|.....+
T Consensus 28 ~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~-~~L~~~l~~~~~~l~~~~~~~~ 104 (256)
T cd06612 28 GQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGA-GSVSDIMKITNKTLTEEEIAAI 104 (256)
T ss_pred CcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCC-CcHHHHHHhCccCCCHHHHHHH
Confidence 45578887765432 23345566666666999999987 4678899999998 8998877543334455443334
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+++|+.|||...+ ||.++++||+++....+|++|||+............ . ..... .|.
T Consensus 105 --------~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~-~-~~~~~--------~y~ 166 (256)
T cd06612 105 --------LYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRN-T-VIGTP--------FWM 166 (256)
T ss_pred --------HHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCccccc-c-ccCCc--------ccc
Confidence 5678889999999998 999999999999999999999998764222110000 0 00011 266
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
|||.... ...+.+.||||||++++++++|..|+... ++. ...........
T Consensus 167 ~PE~~~~-----------~~~~~~~Di~s~G~il~~l~~g~~p~~~~--~~~-----~~~~~~~~~~~------------ 216 (256)
T cd06612 167 APEVIQE-----------IGYNNKADIWSLGITAIEMAEGKPPYSDI--HPM-----RAIFMIPNKPP------------ 216 (256)
T ss_pred CHHHHhc-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCc--chh-----hhhhhhccCCC------------
Confidence 7776421 11334579999999999999887776421 100 00000000000
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+. ..........+++..||..+|..||.+..|.
T Consensus 217 -~~~~---~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il 251 (256)
T cd06612 217 -PTLS---DPEKWSPEFNDFVKKCLVKDPEERPSAIQLL 251 (256)
T ss_pred -CCCC---chhhcCHHHHHHHHHHHhcChhhCcCHHHHh
Confidence 0000 0001223456899999999999999998774
No 324
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=98.94 E-value=6.1e-12 Score=140.16 Aligned_cols=226 Identities=9% Similarity=-0.051 Sum_probs=136.8
Q ss_pred CCCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc-------
Q 001416 663 EAAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG------- 729 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~------- 729 (1081)
.+..+++|.+..+.-. ....+..|...+.-.+|.|++.+. ....+++++||+. ++|.+.+......
T Consensus 34 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~-~~l~~~l~~~~~~~~~~~~~ 112 (283)
T cd05091 34 QTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSH-SDLHEFLVMRSPHSDVGSTD 112 (283)
T ss_pred ceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCC-CcHHHHHHhcCCCccccccc
Confidence 3455888887654322 222344555556667899999887 3578899999998 8887665421111
Q ss_pred --------eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhccc
Q 001416 730 --------AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRI 800 (1081)
Q Consensus 730 --------~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~ 800 (1081)
+.+.....+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+...-..........
T Consensus 113 ~~~~~~~~~~~~~~~~~--------~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~ 184 (283)
T cd05091 113 DDKTVKSTLEPADFVHI--------VTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMG 184 (283)
T ss_pred cccccccccCHHHHHHH--------HHHHHHHHHHHHHcCccccccchhheEecCCCceEecccccccccccchheeecc
Confidence 111101111 3467789999999888 99999999999999999999999864311110000000
Q ss_pred ccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEE
Q 001416 801 KLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVV 879 (1081)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~ 879 (1081)
....+.. |.|||..... ..+.+.||||+|++++|+++ |..|+.. ....+...
T Consensus 185 ~~~~~~~--------y~aPE~~~~~-----------~~~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~------ 237 (283)
T cd05091 185 NSLLPIR--------WMSPEAIMYG-----------KFSIDSDIWSYGVVLWEVFSYGLQPYCG--YSNQDVIE------ 237 (283)
T ss_pred CccCCcc--------ccCHHHHhcC-----------CCCcchhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHH------
Confidence 0001111 6677764211 12334799999999999886 4344431 11000000
Q ss_pred eeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 880 VGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 880 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
.+... +. ..+.-.|+....+++..||..+|..||.++.|...|+.
T Consensus 238 -~i~~~--------------~~--~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~ 282 (283)
T cd05091 238 -MIRNR--------------QV--LPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT 282 (283)
T ss_pred -HHHcC--------------Cc--CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence 00000 00 00011456667799999999999999999999998874
No 325
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=98.94 E-value=5.3e-12 Score=140.25 Aligned_cols=217 Identities=9% Similarity=-0.004 Sum_probs=141.3
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.++.... .....+..|++.++=.+|.|++.+. ....++|+|||+. ++|.+.+.. ..+.+.....
T Consensus 29 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~--~~~~~~~~~~ 105 (277)
T cd06642 29 KEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGG-GSALDLLKP--GPLEETYIAT 105 (277)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCC-CcHHHHhhc--CCCCHHHHHH
Confidence 44578888774432 2223355667777777899999888 5678999999998 888877653 2233333222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
. +..+..|+.|||...+ |+.++++|++++....+|++|||+...-........ . .....++
T Consensus 106 ~--------~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~--~--------~~~~~~y 167 (277)
T cd06642 106 I--------LREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN--T--------FVGTPFW 167 (277)
T ss_pred H--------HHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhh--c--------ccCcccc
Confidence 2 5678889999999888 999999999999999999999998754221110000 0 0112236
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||..... ....+.||||||++++|+++|..|+... .+. ..... ...+
T Consensus 168 ~aPE~~~~~-----------~~~~~~Dv~slG~il~el~tg~~p~~~~--~~~-----~~~~~--~~~~----------- 216 (277)
T cd06642 168 MAPEVIKQS-----------AYDFKADIWSLGITAIELAKGEPPNSDL--HPM-----RVLFL--IPKN----------- 216 (277)
T ss_pred cCHHHhCcC-----------CCchhhhHHHHHHHHHHHHhCCCCCccc--chh-----hHHhh--hhcC-----------
Confidence 677765321 1234579999999999999887776421 100 00000 0000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..+.+...+.....+++..||..+|..||++..|.+
T Consensus 217 -----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06642 217 -----SPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLK 252 (277)
T ss_pred -----CCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence 011122234455679999999999999999998866
No 326
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=98.94 E-value=1.2e-11 Score=137.65 Aligned_cols=223 Identities=12% Similarity=0.011 Sum_probs=141.0
Q ss_pred ccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|........ ....+..|+..+.-.+|.|++.+. .+..++|+|||+. |+|.+.+.+....+.+.....+
T Consensus 39 ~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~-g~L~~~l~~~~~~~~~~~~~~~--- 114 (279)
T cd05057 39 VAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPL-GCLLDYVRNHKDNIGSQYLLNW--- 114 (279)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCC-CcHHHHHHhccCCCCHHHHHHH---
Confidence 577766555431 112244455566666899988876 5788999999998 9998876653333444433333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+.+++.|+.|||...+ |+.++++|.+++..-.+|++|||+...-....+.........+. -|+|||
T Consensus 115 -----~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~--------~y~~PE 181 (279)
T cd05057 115 -----CVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPI--------KWMALE 181 (279)
T ss_pred -----HHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccc--------cccCHH
Confidence 5578899999999888 99999999999999999999999876422111110000000011 167777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
.... .....+.|+||||++++|+++ |..|+..... ++... . +..+ .
T Consensus 182 ~~~~-----------~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~---~----~~~~-------------~ 228 (279)
T cd05057 182 SILH-----------RIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA--VEIPD---L----LEKG-------------E 228 (279)
T ss_pred Hhhc-----------CCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH--HHHHH---H----HhCC-------------C
Confidence 5421 112345799999999999887 6666542111 11000 0 0000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
++.. ...+.....+++..||..+|..||++..+...|+.+
T Consensus 229 ~~~~---~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~ 268 (279)
T cd05057 229 RLPQ---PPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKM 268 (279)
T ss_pred CCCC---CCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 0000 112445567899999999999999999999888765
No 327
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=9.4e-08 Score=113.18 Aligned_cols=210 Identities=16% Similarity=0.104 Sum_probs=130.3
Q ss_pred CeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecC---cEEEEEecCCCcccccccccCCCCeeEEE
Q 001416 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCME 171 (1081)
Q Consensus 95 g~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d---~~i~wd~~t~~~~~~~~~~~~~~~I~~ia 171 (1081)
.+|.+||...... .....+ ...+.+..|+|||+.++.+...+ .+.+||+.+++...+. .......+.+
T Consensus 184 ~~l~i~D~~g~~~-----~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYNP-----QTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCCc-----eEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCce
Confidence 4688888865432 122233 45688999999998655554322 3556899876543332 2233445788
Q ss_pred EeeccccCCCCEEE-EEECCC--eEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeC-CCc--EEEEEcC
Q 001416 172 FLSRSAVGDVPLVA-FGSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGL--LILWSAD 245 (1081)
Q Consensus 172 ~~p~~~sp~~~~l~-sgs~Dg--~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~-Dg~--V~vWd~~ 245 (1081)
| +|+|+.++ +.+.+| .|.+||+.+++.. .+. .|........ ++|+|+.|+.++. +|. |.++|+.
T Consensus 255 ~-----SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~---~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 255 F-----SPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPT---WAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred E-----CCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEECC
Confidence 9 78998775 445555 5999999887654 343 4555555666 4899998887764 444 6666666
Q ss_pred CCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCC---eEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 246 ~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg---~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
+++... .+. +.......+|+| ++++|+..+.++ .|.+||+.+++.. .+. +........|
T Consensus 325 ~g~~~~-----lt~--~g~~~~~~~~Sp---DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-------~~~~~~~p~~ 386 (433)
T PRK04922 325 GGSAER-----LTF--QGNYNARASVSP---DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-------PGSLDESPSF 386 (433)
T ss_pred CCCeEE-----eec--CCCCccCEEECC---CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-------CCCCCCCceE
Confidence 554211 112 223345689999 888888765433 6999999887653 321 1122335689
Q ss_pred cCCCCEE-EEECC---ceEEEec
Q 001416 323 APNLDIL-TCVKD---SHIWAIE 341 (1081)
Q Consensus 323 spd~~ll-s~s~D---~~IWdi~ 341 (1081)
+|||+.+ ..+.+ ..||-+.
T Consensus 387 spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 387 APNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCCCCEEEEEEecCCceEEEEEE
Confidence 9999965 33432 2466554
No 328
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=9e-08 Score=112.98 Aligned_cols=172 Identities=15% Similarity=0.027 Sum_probs=101.7
Q ss_pred eeecccCCCCCeEEEEEecCcE-EEE--EecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC-CCeEEEEEc
Q 001416 123 FASPPPSTKGRHFLVICCVNKA-IFL--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSM 198 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~~-i~w--d~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~-Dg~I~lwd~ 198 (1081)
+.+..|+|||+.++++.+.++. .+| |..++... ....+........| +|||+.++..++ +|...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~w-----SpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR---RLTQSSGIDTEPFF-----SPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE---ECCCCCCCCcCeEE-----cCCCCEEEEEecCCCCcEEEEE
Confidence 3467899999877666554443 344 55444322 22333444566789 789998887664 466666655
Q ss_pred --CCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCC---cEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 199 --ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 199 --~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg---~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
.+++...... +........ ++|+|++++..+.++ .|.+||+.+++... +..+ .......|+|
T Consensus 314 ~~~~g~~~~lt~--~g~~~~~~~---~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-------lt~~-~~~~~p~~sp 380 (427)
T PRK02889 314 PASGGAAQRVTF--TGSYNTSPR---ISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-------LTDT-TRDESPSFAP 380 (427)
T ss_pred ECCCCceEEEec--CCCCcCceE---ECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-------ccCC-CCccCceECC
Confidence 4444322222 223334455 489999998877665 69999998875321 2211 2346789999
Q ss_pred ecCCCCEEEEEECCC---eEEEEECCCCceeeEecCCCccccCCCCeEEEeecCC
Q 001416 274 VMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1081)
Q Consensus 274 ~~~~~~~Lvsgs~Dg---~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd 325 (1081)
++++|+.++.++ .+.+.+.. ++..+.+ ..+.+.+...+|+|-
T Consensus 381 ---dg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l------~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 ---NGRYILYATQQGGRSVLAAVSSD-GRIKQRL------SVQGGDVREPSWGPF 425 (427)
T ss_pred ---CCCEEEEEEecCCCEEEEEEECC-CCceEEe------ecCCCCCCCCccCCC
Confidence 888888777543 34555553 4433333 334445556677763
No 329
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=98.93 E-value=1.1e-11 Score=136.97 Aligned_cols=223 Identities=10% Similarity=0.029 Sum_probs=137.4
Q ss_pred ccEEEEeec-cccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEe
Q 001416 667 QNFQLYSWE-TFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVV 740 (1081)
Q Consensus 667 ~~i~~~~~~-~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~ 740 (1081)
++||..... ......+...|+..++-.+|.|++.+. ....++|+||++. |+|.+.+......+.+.....+
T Consensus 35 vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~i-- 111 (269)
T cd05065 35 VAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMEN-GALDSFLRQNDGQFTVIQLVGM-- 111 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCC-CcHHHHHhhCCCCCCHHHHHHH--
Confidence 677776533 111222344455566667899999887 3567899999998 8988776542222333322222
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh-hc--ccccCCcchhhhhhhccc
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA-QD--RIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 816 (1081)
+..++.|+.|||...+ |+.++++|.++++...+|++|||+..+....... .. ......+.. |
T Consensus 112 ------~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~--------y 177 (269)
T cd05065 112 ------LRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIR--------W 177 (269)
T ss_pred ------HHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCccee--------e
Confidence 4567789999999888 9999999999999999999999987542211100 00 000000111 6
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
.|||.... ...+.+.||||+|++++|+.. |..|+.. .+...... .+...
T Consensus 178 ~~PE~~~~-----------~~~~~~~DvwslG~~l~e~l~~g~~p~~~--~~~~~~~~-------~i~~~---------- 227 (269)
T cd05065 178 TAPEAIAY-----------RKFTSASDVWSYGIVMWEVMSYGERPYWD--MSNQDVIN-------AIEQD---------- 227 (269)
T ss_pred cCHhHhcc-----------CcccchhhhhhhHHHHHHHhcCCCCCCCC--CCHHHHHH-------HHHcC----------
Confidence 67776531 112335799999999888765 5555531 11000000 00000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++..+ ..++....+++..||..+|..||++..|...|+++
T Consensus 228 ---~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 228 ---YRLPPP---MDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred ---CcCCCc---ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 000000 13455567899999999999999999999988764
No 330
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=98.93 E-value=2.1e-11 Score=133.97 Aligned_cols=223 Identities=9% Similarity=0.045 Sum_probs=139.2
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCccccccccccccc-ccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~~ 738 (1081)
+..+++|.+....... ..+..|+..++=.+|.|++.+. ....+++++|++. |+|.+.+..+ ...+.+.....+
T Consensus 30 ~~~~a~K~~~~~~~~~-~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~~~~~i 107 (260)
T cd05067 30 HTKVAIKSLKQGSMSP-EAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMEN-GSLVDFLKTPEGIKLTINKLIDM 107 (260)
T ss_pred CceEEEEEecCCCCcH-HHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCC-CCHHHHHHhcCCCCCCHHHHHHH
Confidence 3447888766433321 2234455556666788888776 3457999999998 8888765432 122333333333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
...+..|+.|||...+ |+.++++|++++..+.++++|||+...-........ .....+.. +.
T Consensus 108 --------~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~--------y~ 170 (260)
T cd05067 108 --------AAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAR-EGAKFPIK--------WT 170 (260)
T ss_pred --------HHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccc-cCCccccc--------cc
Confidence 5577889999999888 999999999999999999999998864221110000 00001111 56
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
|||.... ...+.+.||||+|++++|++. |.-|+....-+ +... .....
T Consensus 171 ~pe~~~~-----------~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~--------~~~~~----------- 219 (260)
T cd05067 171 APEAINY-----------GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP-EVIQ--------NLERG----------- 219 (260)
T ss_pred CHHHhcc-----------CCcCcccchHHHHHHHHHHHhCCCCCCCCCChH-HHHH--------HHHcC-----------
Confidence 6775421 112345799999999999987 55555311100 0000 00000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+.+. ....++....+++.+|+..+|..||.++.|..+|+.
T Consensus 220 --~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 220 --YRMP---RPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred --CCCC---CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 0000 011234567899999999999999999999999874
No 331
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=98.93 E-value=6.2e-12 Score=139.91 Aligned_cols=225 Identities=8% Similarity=0.033 Sum_probs=141.4
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
+..+++|.+.-....-......|++.+.-.+|.|++.+. ....++|+|||+. ++|.+.+......+.+.....+
T Consensus 30 ~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~l~~~~~~~~ 108 (280)
T cd06611 30 GLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDG-GALDSIMLELERGLTEPQIRYV 108 (280)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCC-CcHHHHHHHhcCCCCHHHHHHH
Confidence 445788888655444334455677788888899999998 5678999999998 8888776542222333222223
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..++.|+.|||...+ |+.++++||+++....+|++|||+........... ..... ...|.
T Consensus 109 --------~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~--~~~~~--------~~~y~ 170 (280)
T cd06611 109 --------CRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKR--DTFIG--------TPYWM 170 (280)
T ss_pred --------HHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhccccccc--ceeec--------chhhc
Confidence 5577889999999998 99999999999999999999999865321111000 00001 11267
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
+||+....... +.....+.||||+|++++++++|..|+... +..+.. ...... .
T Consensus 171 ~PE~~~~~~~~------~~~~~~~sDi~slG~il~~l~~g~~p~~~~--~~~~~~-------~~~~~~-----------~ 224 (280)
T cd06611 171 APEVVACETFK------DNPYDYKADIWSLGITLIELAQMEPPHHEL--NPMRVL-------LKILKS-----------E 224 (280)
T ss_pred CHHHHhhcccC------CCCCCccccHHHHHHHHHHHHhCCCCcccC--CHHHHH-------HHHhcC-----------C
Confidence 88875321110 111234579999999999999988777422 110000 000000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
...+.. .-.+.....+++..||..+|..||....|.
T Consensus 225 ~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il 260 (280)
T cd06611 225 PPTLDQ---PSKWSSSFNDFLKSCLVKDPDDRPTAAELL 260 (280)
T ss_pred CCCcCC---cccCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence 000000 012334566899999999999999988774
No 332
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=98.93 E-value=1.7e-11 Score=137.85 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=140.6
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.|..+++|.+......-...+..|++.++..+|.|++.+. ....++|++|++. ++|.+...+. .+.+.....
T Consensus 43 ~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~--~~~~~~~~~ 119 (297)
T cd06656 43 TGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAG-GSLTDVVTET--CMDEGQIAA 119 (297)
T ss_pred CCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCC-CCHHHHHHhC--CCCHHHHHH
Confidence 4556889888665443333355567778888999999987 4578999999998 8888765431 222222222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+..|+.|||...+ |+.|+.+|++++....+|++|||+........... ..... ..+|
T Consensus 120 ~--------~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~--~~~~~--------~~~y 181 (297)
T cd06656 120 V--------CRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR--STMVG--------TPYW 181 (297)
T ss_pred H--------HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCc--CcccC--------Cccc
Confidence 2 4467789999999999 99999999999999999999999875422111000 00011 1236
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||.... ...+.+.|+||+|++++++++|..||...... ...+..... +
T Consensus 182 ~aPE~~~~-----------~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~-------~~~~~~~~~-~----------- 231 (297)
T cd06656 182 MAPEVVTR-----------KAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-------RALYLIATN-G----------- 231 (297)
T ss_pred cCHHHHcC-----------CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc-------hheeeeccC-C-----------
Confidence 77776531 11234579999999999999988877421110 011110000 0
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..++..+ ........+++..||..+|..||++..|.+
T Consensus 232 -~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 268 (297)
T cd06656 232 -TPELQNP---ERLSAVFRDFLNRCLEMDVDRRGSAKELLQ 268 (297)
T ss_pred -CCCCCCc---cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011100 122344568999999999999999988765
No 333
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=98.93 E-value=2.2e-11 Score=134.78 Aligned_cols=225 Identities=10% Similarity=0.003 Sum_probs=137.8
Q ss_pred CCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEee-----e------eEEEEEecCcccccccccccccc----
Q 001416 665 APQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFAY-----Q------HYIVISSLCPQYRYLGDVAIPYA---- 727 (1081)
Q Consensus 665 ~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~~-----~------~~~~v~~y~~~~gsl~d~~~~~~---- 727 (1081)
..+++|.+.-+.. +-......|++.++-.+|.|++.+.. + ..++|++|++. |+|.+.+....
T Consensus 28 ~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~-~~l~~~l~~~~~~~~ 106 (273)
T cd05035 28 LKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKH-GDLHSFLLYSRLGGL 106 (273)
T ss_pred ceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCC-CCHHHHHHHhhccCC
Confidence 3478887653321 11223445667777788999998872 1 26899999998 88876653311
Q ss_pred -cceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCc
Q 001416 728 -TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPP 805 (1081)
Q Consensus 728 -~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~ 805 (1081)
..+.+.....+ +..++.|+.|||...+ |+.+|++|++++.+..+|++|||+...-..............+
T Consensus 107 ~~~~~~~~~~~~--------~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~ 178 (273)
T cd05035 107 PEKLPLQTLLKF--------MVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMP 178 (273)
T ss_pred cccCCHHHHHHH--------HHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCC
Confidence 11222222222 4577889999999888 9999999999999999999999987542111000000000111
Q ss_pred chhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeec
Q 001416 806 MLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKD 884 (1081)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~ 884 (1081)
.. |.|||..... ..+.+.||||+|++++|+..+| .|+. ..+..+. . -.+..
T Consensus 179 ~~--------~~~pe~~~~~-----------~~~~~~Dv~SlG~il~el~~~g~~p~~--~~~~~~~-----~--~~~~~ 230 (273)
T cd05035 179 VK--------WIAIESLADR-----------VYTSKSDVWAFGVTMWEIATRGQTPYP--GVENHEI-----Y--DYLRH 230 (273)
T ss_pred cc--------ccCHhhcccC-----------CCCcccchHHHHHHHHHHHhCCCCCCC--CCCHHHH-----H--HHHHc
Confidence 22 6777765321 1234579999999999998744 4442 1110000 0 00000
Q ss_pred CeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 885 GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 885 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+ ...+ +...+.....+++..|+..+|..||.+..+.+.|+.+
T Consensus 231 ~-----------~~~~-----~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 231 G-----------NRLK-----QPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred C-----------CCCC-----CCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 0 0000 0113455677999999999999999999999988753
No 334
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=98.93 E-value=1.5e-11 Score=136.68 Aligned_cols=225 Identities=9% Similarity=-0.044 Sum_probs=138.9
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc----------
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA---------- 727 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~---------- 727 (1081)
+..+++|.+...... ....+..|++.+.-.+|.|++.+. ....++|++|++. |+|.+.+....
T Consensus 35 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~~ 113 (280)
T cd05049 35 KELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEH-GDLNKFLRSHGPDAAFLKSPD 113 (280)
T ss_pred cceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCC-CCHHHHHHhcCCchhhhcccc
Confidence 455788877544332 223345566666667888888877 4678999999998 88887664321
Q ss_pred ---cceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccC
Q 001416 728 ---TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLR 803 (1081)
Q Consensus 728 ---~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~ 803 (1081)
..+.+.....+ +..+..|+.|||...+ |+.++++|++++..-.+|++|||+...-.............
T Consensus 114 ~~~~~l~~~~~~~~--------~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~ 185 (280)
T cd05049 114 SPMGELTLSQLLQI--------AVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTM 185 (280)
T ss_pred cccccccHHHHHHH--------HHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCc
Confidence 11222222222 4567889999999888 99999999999999999999999875321110000000000
Q ss_pred CcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeee
Q 001416 804 PPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGV 882 (1081)
Q Consensus 804 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~ 882 (1081)
.+.. +.|||+... ...+.+.||||+|++++|+++ |..|+... +.++.. ...
T Consensus 186 ~~~~--------y~aPE~~~~-----------~~~~~~~Di~slG~il~e~~~~g~~p~~~~--~~~~~~-------~~~ 237 (280)
T cd05049 186 LPIR--------WMPPESIMY-----------RKFTTESDVWSFGVVLWEIFTYGKQPWYGL--SNEEVI-------ECI 237 (280)
T ss_pred ccce--------ecChhhhcc-----------CCcchhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHH-------HHH
Confidence 0111 668886532 112334799999999999987 65555311 100000 000
Q ss_pred ecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 883 ~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
..+ .+ +.....++....++++.||..+|..||+...|...|++
T Consensus 238 ~~~--------------~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~ 280 (280)
T cd05049 238 TQG--------------RL--LQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280 (280)
T ss_pred HcC--------------Cc--CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence 000 00 00011344566799999999999999999999888753
No 335
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=98.92 E-value=1.4e-11 Score=135.18 Aligned_cols=218 Identities=10% Similarity=0.033 Sum_probs=134.6
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|.+.-.... ...+..|+..++-.+|.|++.+. ....++|+|||+. |+|.+.+......+.|.....+
T Consensus 31 ~aik~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~l~~~i~~~~~~~~~~~~~~~--- 105 (256)
T cd05113 31 VAIKMIKEGSMS-EDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSN-GCLLNYLREHGKRFQPSQLLEM--- 105 (256)
T ss_pred EEEEEcCCCccc-HHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCC-CcHHHHHHhcCCCCCHHHHHHH---
Confidence 677766533221 11234466667777899999887 2346999999998 8888765432223444433334
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..+..|+.|||...+ |+.++++|++++....+|++|||+.......... .......+.. |++||
T Consensus 106 -----~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~--------y~~pe 171 (256)
T cd05113 106 -----CKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYT-SSVGSKFPVR--------WSPPE 171 (256)
T ss_pred -----HHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCcee-ecCCCccChh--------hCCHH
Confidence 5678899999999999 9999999999999999999999987542211100 0000011122 67777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
..... ..+.+.||||+|++++++++ |..|+.. .+.++. . .....+ .
T Consensus 172 ~~~~~-----------~~~~~~Di~slG~~l~~l~~~g~~p~~~--~~~~~~------~-~~~~~~-------------~ 218 (256)
T cd05113 172 VLLYS-----------KFSSKSDVWAFGVLMWEVYSLGKMPYER--FNNSET------V-EKVSQG-------------L 218 (256)
T ss_pred HHhcC-----------cccchhHHHHHHHHHHHHhcCCCCCcCc--CCHHHH------H-HHHhcC-------------C
Confidence 65311 12334799999999999887 5445431 110000 0 000000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
....+. .......+++..||..+|..||+...|.+.|
T Consensus 219 ~~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~ 255 (256)
T cd05113 219 RLYRPH---LASEKVYAIMYSCWHEKAEERPTFQQLLSSI 255 (256)
T ss_pred CCCCCC---CCCHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence 000000 1234567899999999999999999987655
No 336
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=98.92 E-value=2.4e-11 Score=133.72 Aligned_cols=226 Identities=10% Similarity=0.002 Sum_probs=147.2
Q ss_pred CCCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 663 EAAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
.+..+++|.+...... ..+.+..|+..++-.+|.|++.+. ....++|+||++. ++|.+++.+. ..+.+...
T Consensus 24 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~-~~~~~~~~ 101 (264)
T cd06626 24 TGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSG-GTLEELLEHG-RILDEHVI 101 (264)
T ss_pred CCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCC-CcHHHHHhhc-CCCChHHH
Confidence 3556888887766553 444566677777777899988887 4678999999998 8998877652 22444444
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcc--cccCCcchhhhhh
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDR--IKLRPPMLQVVRL 812 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~--~~~~~~~~~~~~~ 812 (1081)
..+ +..+++|+.|||...+ |+.++..|++++....+|++|||+............. ........
T Consensus 102 ~~i--------~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~----- 168 (264)
T cd06626 102 RVY--------TLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPA----- 168 (264)
T ss_pred HHH--------HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcC-----
Confidence 444 6688999999999888 9999999999999999999999988764322211110 00111222
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
|.+||...... +.....+.||||||+++++++.|..||....-. .+ ..+.......
T Consensus 169 ---~~~PE~~~~~~--------~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~-~~-----~~~~~~~~~~------- 224 (264)
T cd06626 169 ---YMAPEVITGGK--------GKGHGRAADIWSLGCVVLEMATGKRPWSELDNE-FQ-----IMFHVGAGHK------- 224 (264)
T ss_pred ---ccChhhccCCC--------CCCCCcccchHHHHHHHHHHHhCCCCccCCcch-HH-----HHHHHhcCCC-------
Confidence 67788764321 011344579999999999999988887522110 00 0000000000
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+ +. ...+.....++++.|+..+|..||.+..|.
T Consensus 225 ------~~~--~~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~ 259 (264)
T cd06626 225 ------PPI--PD-SLQLSPEGKDFLDRCLESDPKKRPTASELL 259 (264)
T ss_pred ------CCC--Cc-ccccCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 000 00 112344556899999999999999998874
No 337
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=98.92 E-value=1.4e-11 Score=136.37 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=133.6
Q ss_pred ccEEEEeecc--ccccCCCCCCcceeeecccCceEEEee-----------eeEEEEEecCcccccccccccccc-----c
Q 001416 667 QNFQLYSWET--FQPVGGLLPQPEWTAWDQTVEYCAFAY-----------QHYIVISSLCPQYRYLGDVAIPYA-----T 728 (1081)
Q Consensus 667 ~~i~~~~~~~--~~l~~~~~~~~k~v~w~~~~~~~~~~~-----------~~~~~v~~y~~~~gsl~d~~~~~~-----~ 728 (1081)
+++|.+.... ..-......|.+.+.-.+|.|++.+.. +..++|++|++. |+|.+.+..+. .
T Consensus 29 ~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~-~~l~~~~~~~~~~~~~~ 107 (272)
T cd05075 29 VAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKH-GDLHSFLLYSRLGDCPQ 107 (272)
T ss_pred EEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCC-CcHHHHHHHhcccCCcc
Confidence 6777665432 111222334555566678999998862 245899999998 88876553211 1
Q ss_pred ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchh-hhcccccCCcc
Q 001416 729 GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTA-AQDRIKLRPPM 806 (1081)
Q Consensus 729 ~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~-~~~~~~~~~~~ 806 (1081)
.+.|.....+ +..+..|+.|||...+ |+.+|++|++++....+|++|||+...-..... ...... ..+.
T Consensus 108 ~~~~~~~~~~--------~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~-~~~~ 178 (272)
T cd05075 108 YLPTQMLVKF--------MTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIA-KMPV 178 (272)
T ss_pred cCCHHHHHHH--------HHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcc-cCCc
Confidence 1223222222 4467889999999998 999999999999999999999998764221110 000000 1111
Q ss_pred hhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeecC
Q 001416 807 LQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKDG 885 (1081)
Q Consensus 807 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~ 885 (1081)
. |.|||.... ...+.+.||||+|+++++++.+| .|+.. .+..++ +. ....+
T Consensus 179 ~--------~~~pe~~~~-----------~~~~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~------~~-~~~~~ 230 (272)
T cd05075 179 K--------WIAIESLAD-----------RVYTTKSDVWSFGVTMWEIATRGQTPYPG--VENSEI------YD-YLRQG 230 (272)
T ss_pred c--------cCCHHHccC-----------CCcChHHHHHHHHHHHHHHHcCCCCCCCC--CCHHHH------HH-HHHcC
Confidence 1 556665432 12334579999999999998744 34421 110000 00 00000
Q ss_pred eEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 886 VLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 886 ~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
. ..+. ...+.....++++.||..+|..||++..|.+.|+.
T Consensus 231 ~-----------~~~~-----~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~ 270 (272)
T cd05075 231 N-----------RLKQ-----PPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEK 270 (272)
T ss_pred C-----------CCCC-----CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 0 0000 01233456799999999999999999999988875
No 338
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=98.92 E-value=1.2e-11 Score=142.11 Aligned_cols=237 Identities=9% Similarity=0.011 Sum_probs=134.8
Q ss_pred CCCCCccEEEEeeccc-cccCCCCCCcceeeec-ccCceEEEe------eeeEEEEEecCcccccccccccccccc----
Q 001416 662 AEAAPQNFQLYSWETF-QPVGGLLPQPEWTAWD-QTVEYCAFA------YQHYIVISSLCPQYRYLGDVAIPYATG---- 729 (1081)
Q Consensus 662 ~~~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~-~~~~~~~~~------~~~~~~v~~y~~~~gsl~d~~~~~~~~---- 729 (1081)
..++.++||.+.-+.. ...+.+..|++.+.-. +|.|++.+. ....++++|||+. |+|.+.+......
T Consensus 35 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~-g~L~~~i~~~~~~~~~~ 113 (343)
T cd05103 35 ATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKF-GNLSNYLRSKRGEFVPY 113 (343)
T ss_pred ccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEeccCC-CcHHHHHHhcCCccccc
Confidence 3456689998754321 1223344566655555 567887765 1346889999999 9998765431100
Q ss_pred --------------eeeEee----eeeEe-ccC----------------------------ce-------EEEeeeCCcc
Q 001416 730 --------------AVWHRR----QLFVV-TPT----------------------------TI-------ECVFVDAGVA 755 (1081)
Q Consensus 730 --------------~~w~~~----~~~~~-t~~----------------------------~i-------~~~~~~~gm~ 755 (1081)
.+|.+. ...++ ++. .+ -+..+++|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~ 193 (343)
T cd05103 114 KTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGME 193 (343)
T ss_pred cccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 000000 00000 000 00 0226778999
Q ss_pred ccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCcccccc
Q 001416 756 AIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVE 834 (1081)
Q Consensus 756 ~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 834 (1081)
|||...+ |+.+|++|++++....+|++|||+...-..............+.. |.|||....
T Consensus 194 ~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~--------y~aPE~~~~---------- 255 (343)
T cd05103 194 FLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK--------WMAPETIFD---------- 255 (343)
T ss_pred HHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcc--------eECcHHhcC----------
Confidence 9999888 999999999999999999999998753211100000000011111 567776421
Q ss_pred CCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccc
Q 001416 835 GDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAA 913 (1081)
Q Consensus 835 ~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~ 913 (1081)
...+.+.||||+|+++++++. |..|+.....+ ++.. ..+..+ ..+..+ ..+...
T Consensus 256 -~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~-------~~~~~~-------------~~~~~~---~~~~~~ 310 (343)
T cd05103 256 -RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFC-------RRLKEG-------------TRMRAP---DYTTPE 310 (343)
T ss_pred -CCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-HHHH-------HHHhcc-------------CCCCCC---CCCCHH
Confidence 112345799999999999875 55555321111 0000 000000 000000 012334
Q ss_pred cccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 914 YGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 914 ~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..+++..||..+|..||++..|.+.|+.+
T Consensus 311 ~~~~~~~cl~~~p~~Rps~~eil~~l~~~ 339 (343)
T cd05103 311 MYQTMLDCWHGEPSQRPTFSELVEHLGNL 339 (343)
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 56889999999999999999999888764
No 339
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=98.92 E-value=2e-11 Score=136.13 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=144.3
Q ss_pred CCCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEee-------eeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFAY-------QHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~~-------~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.+..+++|.+.-.. .........|++.++=.+|.|++.+.. ...++|+||++. ++|.+.+......++|..
T Consensus 32 ~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g-~~L~~~l~~~~~~~~~~~ 110 (284)
T cd05079 32 TGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPS-GSLKEYLPRNKNKINLKQ 110 (284)
T ss_pred ccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCC-CCHHHHHHhccCCCCHHH
Confidence 34557888775332 222233445555566678999988761 457899999998 899887644222355555
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh-hcccccCCcchhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA-QDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~-~~~~~~~~~~~~~~~~ 812 (1081)
...+ +..+..++.|||...+ |+.++++|++++..-.+|+.|||+...-...... ........+.
T Consensus 111 ~~~i--------~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~------ 176 (284)
T cd05079 111 QLKY--------AVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPV------ 176 (284)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCc------
Confidence 4444 6688899999999888 9999999999999999999999987642211100 0000011111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCC-CCCCCCCCCcEEeeeecCeEEEEe
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFP-TEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
+|.|||.... ...+.+.||||+|++++|++++..+.....-. .+...|...... .+
T Consensus 177 --~y~apE~~~~-----------~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 233 (284)
T cd05079 177 --FWYAPECLIQ-----------SKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMT----------VT 233 (284)
T ss_pred --cccCHHHhcc-----------CCCCccccchhhhhhhhhhhcCCCCCccccchhhhhccccccccc----------HH
Confidence 2678886431 11233579999999999988755433210000 000000000000 00
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+......-....+ ....+.....+++..|+..+|..||.++.|.+.|+.+
T Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 234 RLVRVLEEGKRLP-RPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred HHHHHHHcCccCC-CCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 0000000000000 1123456678999999999999999999999888753
No 340
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=98.92 E-value=2.5e-11 Score=133.44 Aligned_cols=220 Identities=12% Similarity=0.054 Sum_probs=138.7
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCccccccccccccc-ccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~~~~t 741 (1081)
+++|.+....... ..+..|+..++-.+|.+++.+. ..+.+++++|++. ++|.+.+... ...+.+.....+
T Consensus 33 ~~~k~~~~~~~~~-~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~--- 107 (260)
T cd05070 33 VAVKTLKPGTMSP-ESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSK-GSLLDFLKDGEGRALKLPNLVDM--- 107 (260)
T ss_pred eEEEEecCCCCCH-HHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCC-CcHHHHHHhcCCCCCCHHHHHHH---
Confidence 6777766543321 1234466667777888888877 4467899999998 8888765431 122333333333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
...+..|+.|||...+ |+.++++|++++.+..+|++|||+...-...... .......++. ++|||
T Consensus 108 -----~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~--------y~aPE 173 (260)
T cd05070 108 -----AAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYT-ARQGAKFPIK--------WTAPE 173 (260)
T ss_pred -----HHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccc-cccCCCCCcc--------ccChH
Confidence 5578889999999988 9999999999999999999999998652211100 0000011222 67787
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
+... ...+.+.||||+|++++++.. |..|+.. .+..+ .... .... .
T Consensus 174 ~~~~-----------~~~~~~~Di~slG~~l~~l~~~g~~p~~~--~~~~~-----~~~~--~~~~-------------~ 220 (260)
T cd05070 174 AALY-----------GRFTIKSDVWSFGILLTELVTKGRVPYPG--MNNRE-----VLEQ--VERG-------------Y 220 (260)
T ss_pred HHhc-----------CCCcchhhhHHHHHHHHHHHhcCCCCCCC--CCHHH-----HHHH--HHcC-------------C
Confidence 6421 113345799999999999987 4444431 11000 0000 0000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+... .-.+.....+++..|+..+|..||.+..+..+|+.
T Consensus 221 ~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 221 RMPC---PQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred CCCC---CCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 0000 11334567799999999999999999999999874
No 341
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.92 E-value=2.4e-11 Score=132.98 Aligned_cols=252 Identities=12% Similarity=0.023 Sum_probs=160.4
Q ss_pred CCCCCCCCccEEEEe-eccccccCCCCCCcceeeecccCceEEEe---------eeeEEEEEecCccccccccccccccc
Q 001416 659 KSPAEAAPQNFQLYS-WETFQPVGGLLPQPEWTAWDQTVEYCAFA---------YQHYIVISSLCPQYRYLGDVAIPYAT 728 (1081)
Q Consensus 659 ~~~~~~~~~~i~~~~-~~~~~l~~~~~~~~k~v~w~~~~~~~~~~---------~~~~~~v~~y~~~~gsl~d~~~~~~~ 728 (1081)
.|.|.|.-||||.|. .+.-.--| ..|+-|.+=++|+|+..|| ...-.+||+|-+- |||-|-|.....
T Consensus 229 rG~wrGe~VAVKiF~srdE~SWfr--EtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~-GSL~DyL~r~tv 305 (513)
T KOG2052|consen 229 RGRWRGEDVAVKIFSSRDERSWFR--ETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEH-GSLYDYLNRNTV 305 (513)
T ss_pred eccccCCceEEEEecccchhhhhh--HHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccC-CcHHHHHhhccC
Confidence 455789999999653 22222222 2355567778999999999 4456789999999 999998876433
Q ss_pred ceeeEeeeeeEeccCceEEEeeeCCccccchhhh---------hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhc-
Q 001416 729 GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM---------KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD- 798 (1081)
Q Consensus 729 ~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~---------hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~- 798 (1081)
..+-+-+. +.-++-|+.+||.+.. |--|||.|.+|-..=+|-|+|+||---....++.-+
T Consensus 306 ~~~~ml~L----------alS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi 375 (513)
T KOG2052|consen 306 TTEGMLKL----------ALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDI 375 (513)
T ss_pred CHHHHHHH----------HHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccC
Confidence 32223332 3346679999998754 888999999999999999999999753333322211
Q ss_pred ccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc---ceeeecCCCCCCCCCCC
Q 001416 799 RIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG---VAVAVTRFPTEQKRPIG 875 (1081)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 875 (1081)
....+-.--+ ..|||++-+.-.++.-. +-...|||||++++.|++.|- +.+....+|-..+.|..
T Consensus 376 ~~N~rVGTKR-------YMAPEvLdetin~~~Fe-----syk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~D 443 (513)
T KOG2052|consen 376 PPNPRVGTKR-------YMAPEVLDETINMKHFE-----SYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSD 443 (513)
T ss_pred CCCCccceee-------ccChHHhhhhcChhhhh-----hhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCC
Confidence 0011111110 47999976533232221 223369999999988887553 33322222211222222
Q ss_pred CcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 876 PLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 876 p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
|-+- .-..|.++++.. +++++.--.+.++-....+|+.||..+|..|=.--+|++.|.++
T Consensus 444 Ps~e---eMrkVVCv~~~R----P~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l 503 (513)
T KOG2052|consen 444 PSFE---EMRKVVCVQKLR----PNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKL 503 (513)
T ss_pred CCHH---HHhcceeecccC----CCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHH
Confidence 2110 112255566543 44444455566777788999999999999998888899998876
No 342
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=98.91 E-value=9e-12 Score=136.62 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=144.6
Q ss_pred CccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccc-cceeeEeeeeeE
Q 001416 666 PQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQLFV 739 (1081)
Q Consensus 666 ~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~~~~ 739 (1081)
.+++|.+..+.. +..+++..|++.+.=.+|.|++.+. ....++++|||+. |+|.+.+.+.. ..+.|.....+
T Consensus 25 ~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~- 102 (257)
T cd05040 25 PVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPL-GSLLDRLRKDALGHFLISTLCDY- 102 (257)
T ss_pred EEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCC-CcHHHHHHhcccccCcHHHHHHH-
Confidence 368888877766 4555566677777777899999877 3567899999998 89887765533 23444443333
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh-hcccccCCcchhhhhhhcccc
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA-QDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+..|+.|||...+ |+.++++|++++....+|++|||+...-...... ........+.. |.
T Consensus 103 -------~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~--------y~ 167 (257)
T cd05040 103 -------AVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFA--------WC 167 (257)
T ss_pred -------HHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCce--------ec
Confidence 5578899999999998 9999999999999999999999987653221100 00000011112 66
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
|||..... ..+.+.||||+|++++++.+ |..|+.. ...++.. ........
T Consensus 168 ~pE~~~~~-----------~~~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~-----~~~~~~~~----------- 218 (257)
T cd05040 168 APESLRTR-----------TFSHASDVWMFGVTLWEMFTYGEEPWAG--LSGSQIL-----KKIDKEGE----------- 218 (257)
T ss_pred CHHHhccc-----------CcCchhhhHHHHHHHHHHHhCCCCCCCC--CCHHHHH-----HHHHhcCC-----------
Confidence 77754321 12334799999999999886 6666531 1100000 00000000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
.+..+ -.++....+++.+|+..+|..||.+..|..+|.
T Consensus 219 ---~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 219 ---RLERP---EACPQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred ---cCCCC---ccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 00000 023445678999999999999999999998875
No 343
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.91 E-value=1.9e-11 Score=138.08 Aligned_cols=224 Identities=11% Similarity=0.019 Sum_probs=135.5
Q ss_pred CccEEEEeeccc-cccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccc-----------
Q 001416 666 PQNFQLYSWETF-QPVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA----------- 727 (1081)
Q Consensus 666 ~~~i~~~~~~~~-~l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~----------- 727 (1081)
.+++|.++-+.. .-..++..|++.+.-. +|.|++.+. ....++|++||+. |+|.+.+....
T Consensus 52 ~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~~~ 130 (307)
T cd05098 52 KVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK-GNLREYLRARRPPGMEYCYNPT 130 (307)
T ss_pred eEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCCC-CcHHHHHHhcCCcccccccccc
Confidence 367777754311 1112233355444444 689999887 3568899999998 89887764311
Q ss_pred ----cceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhccccc
Q 001416 728 ----TGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKL 802 (1081)
Q Consensus 728 ----~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~ 802 (1081)
..+.|.....+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+................
T Consensus 131 ~~~~~~l~~~~~~~~--------~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~ 202 (307)
T cd05098 131 QVPEEQLSFKDLVSC--------AYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 202 (307)
T ss_pred cCccccCCHHHHHHH--------HHHHHHHHHHHHHCCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccC
Confidence 11222222222 4567789999999888 9999999999999999999999986532110000000000
Q ss_pred CCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEee
Q 001416 803 RPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVG 881 (1081)
Q Consensus 803 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ 881 (1081)
..+.. |.|||.... ...+.+.||||+|++++++++ |..|+.. .+.++....
T Consensus 203 ~~~~~--------y~aPE~~~~-----------~~~~~~~DvwslG~~l~el~~~g~~p~~~--~~~~~~~~~------- 254 (307)
T cd05098 203 RLPVK--------WMAPEALFD-----------RIYTHQSDVWSFGVLLWEIFTLGGSPYPG--VPVEELFKL------- 254 (307)
T ss_pred CCccc--------eeChHHhcc-----------CCCCcHHHHHHHHHHHHHHHcCCCCCCCc--CCHHHHHHH-------
Confidence 00111 677776532 112345799999999999887 5455531 111110000
Q ss_pred eecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 882 VKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 882 ~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
...+ ... .....+.....+++..|+..+|..||+...|.+.|+.+
T Consensus 255 ~~~~-------------~~~---~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~ 299 (307)
T cd05098 255 LKEG-------------HRM---DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 299 (307)
T ss_pred HHcC-------------CCC---CCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence 0000 000 01113455667899999999999999999999888764
No 344
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=98.91 E-value=1.2e-11 Score=138.85 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=138.5
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
|..+++|.++.+...-......|++.++-..|.|++.+. ..+.++|++|++. ++|.+.+.+. .+.+.....+
T Consensus 45 ~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~--~~~~~~~~~i 121 (296)
T cd06654 45 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAG-GSLTDVVTET--CMDEGQIAAV 121 (296)
T ss_pred CcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCC-CCHHHHHHhc--CCCHHHHHHH
Confidence 445788877654433233344455666677899999987 4678999999999 8998776431 2333332222
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+..|+.|||...+ ||.|+++|++++....+|++|||+............ ..... ..|.
T Consensus 122 --------~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~~--------~~y~ 183 (296)
T cd06654 122 --------CRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS--TMVGT--------PYWM 183 (296)
T ss_pred --------HHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccC--cccCC--------cccc
Confidence 4567889999999999 999999999999999999999998654221110000 00011 1267
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
|||..... ....+.||||||++++++++|..||....-. ...+... ...
T Consensus 184 aPE~~~~~-----------~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~-------~~~~~~~-~~~------------ 232 (296)
T cd06654 184 APEVVTRK-----------AYGPKVDIWSLGIMAIEMIEGEPPYLNENPL-------RALYLIA-TNG------------ 232 (296)
T ss_pred CHHHHcCC-----------CCCccchHHHHHHHHHHHHhCCCCCCCCCHH-------HhHHHHh-cCC------------
Confidence 77765321 1234579999999999999988887422110 0000000 000
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..++..+ ........+++.+|+..+|..||.+..|..
T Consensus 233 ~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 233 TPELQNP---EKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred CCCCCCc---cccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence 0001000 012234568999999999999999888765
No 345
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=98.91 E-value=8.4e-12 Score=140.96 Aligned_cols=218 Identities=8% Similarity=-0.010 Sum_probs=139.3
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+...... -...+..|++.++-.+|.|++.+. ....++|+|||+ |+|.+.+......+.+...
T Consensus 40 ~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~--g~l~~~~~~~~~~l~~~~~ 117 (307)
T cd06607 40 NEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL--GSASDILEVHKKPLQEVEI 117 (307)
T ss_pred CcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC--CCHHHHHHHcccCCCHHHH
Confidence 455888887654322 122355677777788999999987 356789999997 4666554432223444433
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..++.|+.|||...+ |+.++++|++++..-.+|++|||+..+....... . ...
T Consensus 118 ~~~--------~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~------~--------~~~ 175 (307)
T cd06607 118 AAI--------CHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSF------V--------GTP 175 (307)
T ss_pred HHH--------HHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCCCCc------c--------CCc
Confidence 333 5678899999999888 9999999999999999999999987653321110 0 112
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
+|.|||+..... ....+.+.||||||++++|+.+|..|+...... ...+.....+.
T Consensus 176 ~y~aPE~~~~~~--------~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~-------~~~~~~~~~~~--------- 231 (307)
T cd06607 176 YWMAPEVILAMD--------EGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-------SALYHIAQNDS--------- 231 (307)
T ss_pred cccCceeeeccC--------CCCCCcccchHHHHHHHHHHHcCCCCCCCccHH-------HHHHHHhcCCC---------
Confidence 378888752110 111234579999999999999887776321110 00000000000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..+ ....+.....++++.||..+|..||.+..|..
T Consensus 232 ----~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 266 (307)
T cd06607 232 ----PTL----SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLK 266 (307)
T ss_pred ----CCC----CchhhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 000 01123345679999999999999999998865
No 346
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.90 E-value=1.1e-07 Score=98.88 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=116.5
Q ss_pred eeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeE--EEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 167 I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~--~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
..++.| ++.+..++++-.+|.+.+-+...... ++.++ +|.-..+... | ...+.+++.+||.|+.+..||+
T Consensus 124 ~lslD~-----~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~-f-~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDI-----STSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAK-F-SDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEe-----eccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeee-c-ccCCCceEEecCCCceEEEEEe
Confidence 457788 67788899999999999766654433 33666 8999988887 2 6677789999999999999999
Q ss_pred CCCC-cccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECC-CCceeeEecCCCccccCCCCeEEEee
Q 001416 245 DHGQ-DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 245 ~~~~-~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~-t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
+..+ .+.. .-+-|..+|.++.-+| +.+.+++||+.|-.|++||.+ .++++.. ..-.+.||.+.+
T Consensus 196 R~p~~~i~~-----n~kvH~~GV~SI~ss~--~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 196 RIPKTFIWH-----NSKVHTSGVVSIYSSP--PKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKH 261 (339)
T ss_pred cCCcceeee-----cceeeecceEEEecCC--CCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEEe
Confidence 9433 2221 1356899999999998 588999999999999999998 4666543 233479999999
Q ss_pred cCCCC--EE-EEECCc-eEEEecc
Q 001416 323 APNLD--IL-TCVKDS-HIWAIEH 342 (1081)
Q Consensus 323 spd~~--ll-s~s~D~-~IWdi~~ 342 (1081)
+|... ++ +|-..| +|-+.+.
T Consensus 262 ~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred cchhhhHHHHHHHhcCceEEEecc
Confidence 99655 34 444455 6766664
No 347
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=98.90 E-value=2.2e-11 Score=134.32 Aligned_cols=224 Identities=8% Similarity=-0.038 Sum_probs=136.1
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
+..+++|.+.-+.......+..|+..++-.+|.|++.+. ....++++|||+. ++|.+.+... ..+.......+
T Consensus 34 ~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~-~~~~~~~~~~~ 111 (267)
T cd06645 34 GELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGG-GSLQDIYHVT-GPLSESQIAYV 111 (267)
T ss_pred CcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCC-CcHHHHHHhc-CCCCHHHHHHH
Confidence 445788877654332222233455667777899999888 4678999999998 8998765431 12222222222
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..++.|+.|||...+ |+.++.+|++++.+-.+|++|||+...-........ .... .-+|.
T Consensus 112 --------~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~--------~~~y~ 173 (267)
T cd06645 112 --------SRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRK--SFIG--------TPYWM 173 (267)
T ss_pred --------HHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccc--cccC--------ccccc
Confidence 4568889999999888 999999999999999999999998654221111100 0001 11277
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
|||+..... +.....+.||||+|++++++++|..|+....-. ....... ... .
T Consensus 174 aPE~~~~~~--------~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~-------~~~~~~~-~~~----------~- 226 (267)
T cd06645 174 APEVAAVER--------KGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-------RALFLMT-KSN----------F- 226 (267)
T ss_pred Chhhhcccc--------CCCCCchhhhHHHHHHHHHHhcCCCCcccccch-------hhHHhhh-ccC----------C-
Confidence 888753211 111234579999999999999887776421100 0000000 000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+...... .......++++.|+..+|..||+.+.|.
T Consensus 227 ~~~~~~~~~--~~~~~~~~li~~~l~~~P~~R~~~~~ll 263 (267)
T cd06645 227 QPPKLKDKM--KWSNSFHHFVKMALTKNPKKRPTAEKLL 263 (267)
T ss_pred CCCcccccC--CCCHHHHHHHHHHccCCchhCcCHHHHh
Confidence 000000001 1223456899999999999999988764
No 348
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=98.90 E-value=2.7e-11 Score=135.04 Aligned_cols=170 Identities=6% Similarity=-0.052 Sum_probs=115.9
Q ss_pred CCCCccEEEEeeccccc-c-CCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 663 EAAPQNFQLYSWETFQP-V-GGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l-~-~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
.|+.+++|.+....... . +....|++.++-.+|.|++.+. ....++|+|||+. +.|..+..+ ...+.|...
T Consensus 25 ~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~-~~l~~~~~~-~~~~~~~~~ 102 (286)
T cd07847 25 TGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDH-TVLNELEKN-PRGVPEHLI 102 (286)
T ss_pred CCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCc-cHHHHHHhC-CCCCCHHHH
Confidence 35568888776443221 2 2234566677777899999887 4578999999998 777665433 223455444
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+++|+.|||...+ ||.++++|++++....+|++|||+...-....... ..+. ...
T Consensus 103 ~~~--------~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~~~~--------~~~ 164 (286)
T cd07847 103 KKI--------IWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDY--TDYV--------ATR 164 (286)
T ss_pred HHH--------HHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcccc--cCcc--------ccc
Confidence 444 6678899999999888 99999999999999999999999886532211000 0001 112
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
+|.|||..... ...+.+.||||+|++++++++|..|+.
T Consensus 165 ~~~aPE~~~~~----------~~~~~~~Di~slG~i~~~l~~g~~p~~ 202 (286)
T cd07847 165 WYRAPELLVGD----------TQYGPPVDVWAIGCVFAELLTGQPLWP 202 (286)
T ss_pred ccCCHHHHhCC----------CCcCchhhhHHHHHHHHHHHhCCCCCC
Confidence 37888875311 112234799999999999999887774
No 349
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=98.90 E-value=1.8e-11 Score=134.88 Aligned_cols=227 Identities=10% Similarity=-0.027 Sum_probs=141.0
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc--cceeeEee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA--TGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~--~~~~w~~~ 735 (1081)
|..+++|.++..+.. -...+..|++.++-.+|.|++.+. ..+.+++++||+. ++|.+.+.+.. ..+++..-
T Consensus 26 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~-~~l~~~~~~~~~~~~~~~~~~ 104 (267)
T cd06610 26 NEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSG-GSLLDIMKSSYPRGGLDEAII 104 (267)
T ss_pred CcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCC-CcHHHHHHHhcccCCCCHHHH
Confidence 445788887654432 233456677778888999999988 5678899999998 88887765421 12333332
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhh--cccccCCcchhhhhh
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQ--DRIKLRPPMLQVVRL 812 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~ 812 (1081)
..+ +..+..|+.|||...+ ||.++++|++++....+|++|||+...-....... .........
T Consensus 105 ~~~--------~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~------ 170 (267)
T cd06610 105 ATV--------LKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTP------ 170 (267)
T ss_pred HHH--------HHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCCh------
Confidence 222 4567789999999888 99999999999999999999999865422111100 000001111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
.|.|||..... ...+.++|+||+|++++++++|..|+...... +.... .....
T Consensus 171 --~y~~Pe~~~~~----------~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~--~~~~~------~~~~~------- 223 (267)
T cd06610 171 --CWMAPEVMEQV----------HGYDFKADIWSFGITAIELATGAAPYSKYPPM--KVLML------TLQND------- 223 (267)
T ss_pred --hhcChHHHccc----------cCcCcccchHhHhHHHHHHHhCCCCccccChh--hhHHH------HhcCC-------
Confidence 26777765321 11234579999999999999998887522111 00000 00000
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
...+....-.-.......+++..|+..+|..||+...|.+
T Consensus 224 -----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 224 -----PPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred -----CCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 0000000000022345679999999999999999887753
No 350
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=98.89 E-value=2e-11 Score=138.03 Aligned_cols=219 Identities=8% Similarity=-0.038 Sum_probs=135.2
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+.+.... ..+++..|++.++-.+|.|++.+. ....++|++||+ |+|.+++......+++...
T Consensus 40 ~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~--~~l~~~~~~~~~~l~~~~~ 117 (308)
T cd06634 40 SEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL--GSASDLLEVHKKPLQEVEI 117 (308)
T ss_pred CcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC--CCHHHHHHHcCCCCCHHHH
Confidence 445788887654322 122344566677777888888876 457789999996 5666655432222333222
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+..|+.|||...+ ||.++++|++++....+|++|||+...-...... ....
T Consensus 118 ~~~--------~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~------~~~~-------- 175 (308)
T cd06634 118 AAV--------THGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXF------VGTP-------- 175 (308)
T ss_pred HHH--------HHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCcccc------cCCc--------
Confidence 222 4467789999999998 9999999999999999999999987643221110 0111
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|.|||...... +...+.+.||||+|++++++.+|..|+....-. + ..+. ...+
T Consensus 176 ~y~aPE~~~~~~--------~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~-----~~~~--~~~~--------- 229 (308)
T cd06634 176 YWMAPEVILAMD--------EGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--S-----ALYH--IAQN--------- 229 (308)
T ss_pred cccCHHHHhhcc--------cCCCCcccchHHHHHHHHHHHcCCCCCccccHH--H-----HHHH--Hhhc---------
Confidence 267777742110 111234579999999999999888776321100 0 0000 0000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQF 938 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~ 938 (1081)
..+............++++.||...|..||.+..+.+.
T Consensus 230 ------~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 230 ------ESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred ------CCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence 00000011233445689999999999999999888754
No 351
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=98.89 E-value=2.4e-11 Score=138.34 Aligned_cols=169 Identities=9% Similarity=-0.092 Sum_probs=112.3
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+..+... -+.+.+.|.+.+.-..|.|++.+. ....++|+|||+. |+|.+.+... ..+.+..
T Consensus 19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~~ 96 (323)
T cd05571 19 TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANG-GELFFHLSRE-RVFSEDR 96 (323)
T ss_pred CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCC-CcHHHHHHHc-CCCCHHH
Confidence 4566899988764321 122234455666667888888775 4678999999998 8887655431 1222221
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ... -.
T Consensus 97 ~~~~--------~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~--~~~--------gt 158 (323)
T cd05571 97 ARFY--------GAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMK--TFC--------GT 158 (323)
T ss_pred HHHH--------HHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCccc--cee--------cC
Confidence 1112 4578889999999999 999999999999999999999998642111000000 000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... .-+.+.||||+|++++|+++|..|+.
T Consensus 159 ~~y~aPE~~~~~-----------~~~~~~DiwSlG~il~elltg~~Pf~ 196 (323)
T cd05571 159 PEYLAPEVLEDN-----------DYGRAVDWWGLGVVMYEMMCGRLPFY 196 (323)
T ss_pred ccccChhhhcCC-----------CCCccccCcccchhhhhhhcCCCCCC
Confidence 237888886421 12345799999999999999888874
No 352
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=98.89 E-value=2.6e-11 Score=134.57 Aligned_cols=219 Identities=9% Similarity=-0.002 Sum_probs=137.0
Q ss_pred CCCCccEEEEeeccc-cccCCCCCCc---ceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 663 EAAPQNFQLYSWETF-QPVGGLLPQP---EWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~-~l~~~~~~~~---k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
.|+.+++|.++.+.. ..+.++..|. +.+.-.+|.|++.+. .+..++|++|++. ++|.+.+... .+.+.
T Consensus 25 ~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~--~l~~~ 101 (277)
T cd06917 25 TGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEG-GSVRTLMKAG--PIAEK 101 (277)
T ss_pred CCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCC-CcHHHHHHcc--CCCHH
Confidence 345578888764321 1111222232 223334588898877 4678999999998 8998876542 34444
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..++.|+.|||...+ ||.++++|++++..-.++++|||+............ .....
T Consensus 102 ~~~~i--------~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~------- 164 (277)
T cd06917 102 YISVI--------IREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRS--TFVGT------- 164 (277)
T ss_pred HHHHH--------HHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccc--cccCC-------
Confidence 33333 5578889999999998 999999999999999999999998765332211100 00111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
-.|.|||.... +...+.+.||||+|+++++++.|..|+...... ...... ...
T Consensus 165 -~~y~aPE~~~~----------~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-------~~~~~~--~~~------- 217 (277)
T cd06917 165 -PYWMAPEVITE----------GKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-------RAMMLI--PKS------- 217 (277)
T ss_pred -cceeCHHHhcc----------CCccccchhHHHHHHHHHHHHhCCCCCCCCChh-------hhhhcc--ccC-------
Confidence 12778886532 111234579999999999999988877422111 000000 000
Q ss_pred cccccccCCCCcccce-ecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 893 YMCAHALSLSHPGIRC-RCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
.++.+.. .......+++..|+..+|..||....+.+
T Consensus 218 ---------~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 218 ---------KPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred ---------CCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence 0000111 13345678999999999999999988854
No 353
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.89 E-value=2.7e-11 Score=137.34 Aligned_cols=233 Identities=11% Similarity=0.026 Sum_probs=135.0
Q ss_pred CCccEEEEeecc-ccccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEeee
Q 001416 665 APQNFQLYSWET-FQPVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQ 736 (1081)
Q Consensus 665 ~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~ 736 (1081)
..+++|.+.... ..-..++..|++.++=. +|.|++.+. ....++++||++. |+|.+.+.... ...++.++.
T Consensus 45 ~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~i~~~~~~~~~~~~~~ 123 (314)
T cd05099 45 VTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAK-GNLREFLRARRPPGPDYTFDI 123 (314)
T ss_pred eEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCC-CcHHHHHHhcCCCcccccccc
Confidence 346777665321 11122233455445444 588999887 3458999999999 88887654311 111222211
Q ss_pred eeEec----cCce--EEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 737 LFVVT----PTTI--ECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 737 ~~~~t----~~~i--~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
..+.. ...+ -+..++.|+.|||...+ |+.+|++|++++....+|++|||+...-..............+.
T Consensus 124 ~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~--- 200 (314)
T cd05099 124 TKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPV--- 200 (314)
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCc---
Confidence 10000 0000 03468889999999988 99999999999999999999999875321110000000000011
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
.|.|||.... ...+.+.||||+|++++++++ |..|+. ..+.++. +.. ...+
T Consensus 201 -----~y~aPE~~~~-----------~~~~~~~DiwslG~~l~el~~~g~~p~~--~~~~~~~------~~~-~~~~--- 252 (314)
T cd05099 201 -----KWMAPEALFD-----------RVYTHQSDVWSFGILMWEIFTLGGSPYP--GIPVEEL------FKL-LREG--- 252 (314)
T ss_pred -----cccCHHHHcc-----------CCcCccchhhHHHHHHHHHHhCCCCCCC--CCCHHHH------HHH-HHcC---
Confidence 1677776521 113345799999999999887 444442 1111100 000 0000
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
... .....+.....+++.+|+..+|..||....+...|+++
T Consensus 253 ----------~~~---~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~ 293 (314)
T cd05099 253 ----------HRM---DKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKV 293 (314)
T ss_pred ----------CCC---CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 000 00123455667899999999999999999999888765
No 354
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=98.89 E-value=3.1e-11 Score=137.43 Aligned_cols=170 Identities=4% Similarity=-0.148 Sum_probs=114.3
Q ss_pred CCCCCccEEEEeecccc----ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceee
Q 001416 662 AEAAPQNFQLYSWETFQ----PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW 732 (1081)
Q Consensus 662 ~~~~~~~i~~~~~~~~~----l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w 732 (1081)
..|..+++|.+...... .......|.+.++-.+|.|++.+. ....++|+|||+. |+|.+.+.... .+.+
T Consensus 22 ~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~-~~~~ 99 (323)
T cd05584 22 DTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSG-GELFMHLEREG-IFME 99 (323)
T ss_pred CCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCC-chHHHHHHHcC-CCCH
Confidence 34667899988764321 112234566677788899999886 4578999999998 88877664321 1111
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..+..|+.|||...+ |+.+|++|++++....+|++|||+............ .....
T Consensus 100 ~~~~~~--------~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~gt------ 163 (323)
T cd05584 100 DTACFY--------LSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTH--TFCGT------ 163 (323)
T ss_pred HHHHHH--------HHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCccc--ccCCC------
Confidence 111111 4468889999999888 999999999999999999999998653211110000 00111
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... ..+.+.||||+|++++|+++|..||.
T Consensus 164 --~~y~aPE~~~~~-----------~~~~~~DiwslG~il~ell~G~~pf~ 201 (323)
T cd05584 164 --IEYMAPEILMRS-----------GHGKAVDWWSLGALMYDMLTGAPPFT 201 (323)
T ss_pred --ccccChhhccCC-----------CCCCcceecccHHHHHHHhcCCCCCC
Confidence 127888886321 12345799999999999999888875
No 355
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=98.89 E-value=2.4e-11 Score=134.25 Aligned_cols=225 Identities=10% Similarity=0.017 Sum_probs=137.0
Q ss_pred CccEEEEeeccccc-cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeE
Q 001416 666 PQNFQLYSWETFQP-VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV 739 (1081)
Q Consensus 666 ~~~i~~~~~~~~~l-~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~ 739 (1081)
.+++|..+.....- ...+..|+..+.-.+|.|++.+. ....++|+|||+. |+|.+.+......+.+.....+
T Consensus 34 ~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~i- 111 (267)
T cd05066 34 PVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMEN-GSLDAFLRKHDGQFTVIQLVGM- 111 (267)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCC-CCHHHHHHhcCCCCCHHHHHHH-
Confidence 36777765432111 12234455555556799999986 3567889999998 8888776543222333222222
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccC
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+..++.|+.|||...+ |+.++++|++++....+|++|||+...-......... ...... ..-+.|
T Consensus 112 -------~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~--~~~~~~-----~~~y~~ 177 (267)
T cd05066 112 -------LRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYT--TRGGKI-----PIRWTA 177 (267)
T ss_pred -------HHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeee--cCCCcc-----ceeecC
Confidence 4467889999999888 9999999999999999999999987643211110000 000000 001456
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
||.... ...+.+.||||||+++++++. |..|+.. .+.++.. . ...+. .
T Consensus 178 pe~~~~-----------~~~~~~~Dv~slG~~l~ell~~g~~p~~~--~~~~~~~-----~--~~~~~-----------~ 226 (267)
T cd05066 178 PEAIAY-----------RKFTSASDVWSYGIVMWEVMSYGERPYWE--MSNQDVI-----K--AIEEG-----------Y 226 (267)
T ss_pred HhHhcc-----------CccCchhhhHHHHHHHHHHhcCCCCCccc--CCHHHHH-----H--HHhCC-----------C
Confidence 665421 123345799999999998765 6666532 1110000 0 00000 0
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.++. ...++....+++..|+..+|..||.+..|.+.|+++
T Consensus 227 ~~~~-----~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 227 RLPA-----PMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred cCCC-----CCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 0010 113445567999999999999999999999998763
No 356
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-11 Score=132.81 Aligned_cols=218 Identities=10% Similarity=-0.020 Sum_probs=142.3
Q ss_pred CCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe----eee--EEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA----YQH--YIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~--~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
+.+-|+|.+.-.. -.+.++|..|++-.+-.+++++|.|- .+. ++|+|||.-. |||.+++.+- ..|.+..
T Consensus 104 ~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDg-GSLd~~~k~~---g~i~E~~ 179 (364)
T KOG0581|consen 104 GKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDG-GSLDDILKRV---GRIPEPV 179 (364)
T ss_pred CeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCC-CCHHHHHhhc---CCCCHHH
Confidence 4445666662222 23344588899999999999999887 343 8999999999 9999988751 2233221
Q ss_pred --eeEeccCceEEEeeeCCccccch-hhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 737 --LFVVTPTTIECVFVDAGVAAIDV-ETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 737 --~~~~t~~~i~~~~~~~gm~~lh~-s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
.+ +.-+++|+.|||. ..| |.-.|++|.+|.++=-+||+|||.-..-......+. -=
T Consensus 180 L~~i--------a~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tf------------vG 239 (364)
T KOG0581|consen 180 LGKI--------ARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTF------------VG 239 (364)
T ss_pred HHHH--------HHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccc------------cc
Confidence 12 4457799999996 555 999999999999999999999997642110000000 01
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEee-eecCeEEEEe
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVG-VKDGVLWLID 891 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~d 891 (1081)
.++.+|||-.. |..-+.++||||+|+-++|.++|..|+.-..- .+..+.-++. +.++
T Consensus 240 T~~YMsPERi~-----------g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~-----~~~~~~~Ll~~Iv~~------ 297 (364)
T KOG0581|consen 240 TSAYMSPERIS-----------GESYSVKSDIWSLGLSLLELAIGRFPYPPPNP-----PYLDIFELLCAIVDE------ 297 (364)
T ss_pred cccccChhhhc-----------CCcCCcccceecccHHHHHHhhCCCCCCCcCC-----CCCCHHHHHHHHhcC------
Confidence 12245555432 54556679999999999999999888852200 0001111111 1111
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.|...|.- .|..+..+|+..|-.-+|..||+-.++-
T Consensus 298 -------ppP~lP~~--~fS~ef~~FV~~CL~Kdp~~R~s~~qLl 333 (364)
T KOG0581|consen 298 -------PPPRLPEG--EFSPEFRSFVSCCLRKDPSERPSAKQLL 333 (364)
T ss_pred -------CCCCCCcc--cCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 12222221 4666788999999999999999988775
No 357
>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=98.89 E-value=1.9e-11 Score=133.97 Aligned_cols=224 Identities=8% Similarity=-0.062 Sum_probs=143.6
Q ss_pred CCCccEEEEeeccccc-cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc--------ccc
Q 001416 664 AAPQNFQLYSWETFQP-VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY--------ATG 729 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l-~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~--------~~~ 729 (1081)
+..+++|.+.-..... .+.+..|++.++...|.|++.+. ....++|++||+. ++|.+.+... ...
T Consensus 23 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~ 101 (262)
T cd00192 23 TTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG-GDLLDYLRKSRPVFPSPEKST 101 (262)
T ss_pred CceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC-CcHHHHHhhcccccccccccc
Confidence 4447777765443322 34455677778888899999987 4568999999998 8998876653 233
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.+.....+ +..+.+|+.|||...+ |+.++++|++++....+|++|||+...-................
T Consensus 102 ~~~~~~~~~--------~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~-- 171 (262)
T cd00192 102 LSLKDLLSF--------AIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPI-- 171 (262)
T ss_pred CCHHHHHHH--------HHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCc--
Confidence 444444444 5677889999999888 99999999999999999999999876532211000000001111
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCC-cceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGG-GVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
.|+|||..... ..+.+.||||+|+++++++.+ ..|+... +..+... ....+
T Consensus 172 ------~y~aPE~~~~~-----------~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~-------~~~~~-- 223 (262)
T cd00192 172 ------RWMAPESLKDG-----------IFTSKSDVWSFGVLLWEIFTLGATPYPGL--SNEEVLE-------YLRKG-- 223 (262)
T ss_pred ------cccCHHHhccC-----------CcchhhccHHHHHHHHHHHhcCCCCCCCC--CHHHHHH-------HHHcC--
Confidence 26788865321 123457999999999998875 4444321 1100000 00000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
..+ .....+.....+++..|+..+|..||....+.+.|+
T Consensus 224 -----------~~~---~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~ 262 (262)
T cd00192 224 -----------YRL---PKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE 262 (262)
T ss_pred -----------CCC---CCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 000 001123456678999999999999999999988763
No 358
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=98.89 E-value=2.3e-11 Score=134.82 Aligned_cols=217 Identities=10% Similarity=-0.001 Sum_probs=138.6
Q ss_pred CCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.++-+. ..-...+..|++.++..+|.|++.+. ....++|+||++. ++|.+.+... .+.+.....
T Consensus 26 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~--~~~~~~~~~ 102 (274)
T cd06609 26 NQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGG-GSCLDLLKPG--KLDETYIAF 102 (274)
T ss_pred CeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCC-CcHHHHHhhc--CCCHHHHHH
Confidence 4557888876543 12222344566667777899998887 4567899999998 8888766542 333333333
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ ||.++++|++++....++++|||+............ ...... .+
T Consensus 103 ~--------~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~--~~~~~~--------~y 164 (274)
T cd06609 103 I--------LREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRN--TFVGTP--------FW 164 (274)
T ss_pred H--------HHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccccccc--cccCCc--------cc
Confidence 3 5567789999999888 999999999999999999999998865432211100 000111 15
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||..... ....+.||||||++++++++|..|+...+-. + .... ....
T Consensus 165 ~~PE~~~~~-----------~~~~~sDv~slG~il~~l~tg~~p~~~~~~~--~-----~~~~--~~~~----------- 213 (274)
T cd06609 165 MAPEVIKQS-----------GYDEKADIWSLGITAIELAKGEPPLSDLHPM--R-----VLFL--IPKN----------- 213 (274)
T ss_pred cChhhhccC-----------CCCchhhHHHHHHHHHHHHhCCCCcccCchH--H-----HHHH--hhhc-----------
Confidence 677765321 1345579999999999999988877422100 0 0000 0000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+...+........+++..|+..+|..||....+.
T Consensus 214 ----~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il 249 (274)
T cd06609 214 ----NPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELL 249 (274)
T ss_pred ----CCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence 000000111344566899999999999999988874
No 359
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=4.4e-08 Score=117.27 Aligned_cols=195 Identities=19% Similarity=0.203 Sum_probs=141.7
Q ss_pred CeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCe--eEEEEeeccccCCCCEEEEEECCCeEEEEEcC
Q 001416 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL--VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1081)
Q Consensus 122 ~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I--~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~ 199 (1081)
++....+..+.+.+.+..+++.+.+||..... +.....+.... .++...- .+++.-++++|+--+.|.+|++.
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~~i~~~er~~l~~~~~~g--~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSS---VLSKIQSDERCTLYSSLIIG--DSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCc---eehhcCCCceEEEEeEEEEe--ccCcEEEEEeccccccEEEEecc
Confidence 34444455566667888888888889887642 22222232221 1111111 15677789999999999999997
Q ss_pred CCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 200 ~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
.-+.-..+. ||.+.+.++. ++.+|.++++.|.|+++|+|++++.+... .+.-+|+..|..++|+| .
T Consensus 164 ~dn~p~~l~-GHeG~iF~i~---~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~---n-- 229 (967)
T KOG0974|consen 164 EDNKPIRLK-GHEGSIFSIV---TSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLP---N-- 229 (967)
T ss_pred ccCCcceec-ccCCceEEEE---EccCCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEecc---c--
Confidence 322222344 9999999998 48999999999999999999999987543 24578999999999998 4
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccCCC-CeEEEeecCCCCEE-EEECCc--eEEEecc
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-ASWCHPRAPNLDIL-TCVKDS--HIWAIEH 342 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~-~v~~v~~spd~~ll-s~s~D~--~IWdi~~ 342 (1081)
.++|++.|.+.++|+.. ++.+.. ..+|.. .++.++.+++..++ +++.|+ ++|++..
T Consensus 230 ~i~t~gedctcrvW~~~-~~~l~~------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVN-GTQLEV------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEeccceEEEEEecc-cceehh------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999999999765 333433 366665 78999999888755 788887 5787764
No 360
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=98.88 E-value=2.7e-11 Score=132.73 Aligned_cols=220 Identities=7% Similarity=-0.050 Sum_probs=139.0
Q ss_pred CCCCccEEEEeeccccc--cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQP--VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l--~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
.|..+++|.++...... .++...|+..++=.+|.|++.+. ....++++|||+. |+|.+.+... ...+.+..
T Consensus 24 ~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~-~~L~~~~~~~~~~~~~~~~ 102 (256)
T cd08221 24 DDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANG-GTLYDKIVRQKGQLFEEEM 102 (256)
T ss_pred CCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCC-CcHHHHHHhccccCCCHHH
Confidence 45667888877654322 22244455556666899999887 4677889999998 8988766542 11222222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..+.+|+.|||...+ ||.++++|++++....+|++|||+...-........ ......
T Consensus 103 ~~~~--------~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~--~~~~~~------- 165 (256)
T cd08221 103 VLWY--------LFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAE--TVVGTP------- 165 (256)
T ss_pred HHHH--------HHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccccccccc--ccCCCc-------
Confidence 2222 4567889999999888 999999999999999999999998765322211000 001111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.|.|||+.... ..+.+.||||+|+++++++.|..|+...... +... ....+
T Consensus 166 -~y~ape~~~~~-----------~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~-~~~~--------~~~~~-------- 216 (256)
T cd08221 166 -YYMSPELCQGV-----------KYNFKSDIWALGCVLYELLTLKRTFDATNPL-NLVV--------KIVQG-------- 216 (256)
T ss_pred -cccCHhhcCCC-----------CCCCcchhHHHHHHHHHHHHCCCCCCCCCHH-HHHH--------HHHcC--------
Confidence 26788875321 1234479999999999999888776432111 0000 00000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
.++.....+.....+++..|+..+|..||....+.+
T Consensus 217 --------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~ 252 (256)
T cd08221 217 --------NYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLD 252 (256)
T ss_pred --------CCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhh
Confidence 000001133445668999999999999999887754
No 361
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=98.88 E-value=3e-11 Score=137.80 Aligned_cols=169 Identities=8% Similarity=-0.077 Sum_probs=113.5
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+..+... -..+...|.+.++-.+|.|++.+. ....++|+|||+. |+|.+.+... ..+.+..
T Consensus 19 ~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~-g~L~~~l~~~-~~l~~~~ 96 (328)
T cd05593 19 SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNG-GELFFHLSRE-RVFSEDR 96 (328)
T ss_pred CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCC-CCHHHHHHhc-CCCCHHH
Confidence 3566899988754321 112234466667777899988765 4578999999998 8887665431 2233322
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ... -.
T Consensus 97 ~~~~--------~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~--~~~--------gt 158 (328)
T cd05593 97 TRFY--------GAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMK--TFC--------GT 158 (328)
T ss_pred HHHH--------HHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccc--ccc--------CC
Confidence 2222 4578899999999988 999999999999999999999998643111100000 000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+... ...+.+.||||+|++++++++|..||.
T Consensus 159 ~~y~aPE~~~~-----------~~~~~~~DiwslGvil~elltG~~Pf~ 196 (328)
T cd05593 159 PEYLAPEVLED-----------NDYGRAVDWWGLGVVMYEMMCGRLPFY 196 (328)
T ss_pred cCccChhhhcC-----------CCCCccCCccccchHHHHHhhCCCCCC
Confidence 12678887532 112345799999999999999888874
No 362
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=98.87 E-value=2.3e-11 Score=135.31 Aligned_cols=226 Identities=10% Similarity=-0.061 Sum_probs=138.2
Q ss_pred CCCccEEEEeec-cccccCCCCCCcceeeecccCceEEEe------eeeEEEEEecCcccccccccccccc-------cc
Q 001416 664 AAPQNFQLYSWE-TFQPVGGLLPQPEWTAWDQTVEYCAFA------YQHYIVISSLCPQYRYLGDVAIPYA-------TG 729 (1081)
Q Consensus 664 ~~~~~i~~~~~~-~~~l~~~~~~~~k~v~w~~~~~~~~~~------~~~~~~v~~y~~~~gsl~d~~~~~~-------~~ 729 (1081)
+..+++|.+.-. ...-...+..|+..++-..|.|++.+. ....+++++|++- |+|.+.+.... ..
T Consensus 35 ~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~-~~L~~~l~~~~~~~~~~~~~ 113 (280)
T cd05043 35 EEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNW-GNLKLFLQQCRLGEANNPQA 113 (280)
T ss_pred eeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCC-CcHHHHHHhccccccccccC
Confidence 444677765321 111122244566666677899999876 2467889999997 88887654311 11
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.+.....+ +..++.|+.|||...+ |+.++++|++++....+|++|||+...-..............+.
T Consensus 114 l~~~~~~~i--------~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~-- 183 (280)
T cd05043 114 LSTQQLVHM--------AIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPV-- 183 (280)
T ss_pred CCHHHHHHH--------HHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcch--
Confidence 223222223 5578899999999888 99999999999999999999999875211110000000000111
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
.|.|||.... ...+.+.||||+|++++|+++ |..|+.. .++.++.. ....+
T Consensus 184 ------~y~apE~~~~-----------~~~~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~-------~~~~~-- 235 (280)
T cd05043 184 ------KWMALESLVN-----------KEYSSASDVWSFGVLLWELMTLGQTPYVE--IDPFEMAA-------YLKDG-- 235 (280)
T ss_pred ------hccCHHHHhc-----------CCCCchhhHHHhHHHHHHHhcCCCCCcCc--CCHHHHHH-------HHHcC--
Confidence 2677876532 112345799999999999887 5555531 11100000 00000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+++..+ ..++....++++.||..+|..||++..+.+.|+.+
T Consensus 236 -----------~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~ 276 (280)
T cd05043 236 -----------YRLAQP---INCPDELFAVMACCWALDPEERPSFSQLVQCLTDF 276 (280)
T ss_pred -----------CCCCCC---CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 011111 12344567899999999999999999999998865
No 363
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=98.87 E-value=3.8e-11 Score=137.35 Aligned_cols=224 Identities=11% Similarity=0.009 Sum_probs=134.8
Q ss_pred CccEEEEeecccc-ccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccc-c---------
Q 001416 666 PQNFQLYSWETFQ-PVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-T--------- 728 (1081)
Q Consensus 666 ~~~i~~~~~~~~~-l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~--------- 728 (1081)
.+++|.+.-+... -...+..|++.++=. +|.|++.+. ....++|++|++. |+|.+.+.... .
T Consensus 46 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~~ 124 (334)
T cd05100 46 TVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASK-GNLREYLRARRPPGMDYSFDTC 124 (334)
T ss_pred eEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCC-CcHHHHHHhcCCcccccccccc
Confidence 4677766532211 122234455555555 688999877 3467899999999 99987764311 1
Q ss_pred -----ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhccccc
Q 001416 729 -----GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKL 802 (1081)
Q Consensus 729 -----~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~ 802 (1081)
.+.|.....+ +..++.|+.|||...+ |+.++++|++++..-.+|++|||+...-............
T Consensus 125 ~~~~~~l~~~~~~~~--------~~qi~~al~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~ 196 (334)
T cd05100 125 KLPEEQLTFKDLVSC--------AYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNG 196 (334)
T ss_pred cCccccCCHHHHHHH--------HHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCC
Confidence 1112111112 3467889999999888 9999999999999999999999986532111000000000
Q ss_pred CCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEee
Q 001416 803 RPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVG 881 (1081)
Q Consensus 803 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ 881 (1081)
..+.. +.|||..... ....+.||||+|++++|++. |..|+...... +... .
T Consensus 197 ~~~~~--------y~aPE~~~~~-----------~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~---~---- 248 (334)
T cd05100 197 RLPVK--------WMAPEALFDR-----------VYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVE--ELFK---L---- 248 (334)
T ss_pred CcCce--------EcCHHHhccC-----------CcCchhhhHHHHHHHHHHHhcCCCCCCCCCHH--HHHH---H----
Confidence 00111 5677765321 12344799999999999886 44444321111 0000 0
Q ss_pred eecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 882 VKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 882 ~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+... ...+ ....+.....+++.+||..+|..||++..|...|+++
T Consensus 249 ~~~~-----------~~~~-----~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~ 293 (334)
T cd05100 249 LKEG-----------HRMD-----KPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRV 293 (334)
T ss_pred HHcC-----------CCCC-----CCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence 0000 0000 0113445667899999999999999999998888765
No 364
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=98.87 E-value=2.6e-11 Score=138.02 Aligned_cols=169 Identities=8% Similarity=-0.098 Sum_probs=113.5
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+..+... -......|.+.+.-.+|.|++.+. ....++|+|||+. |+|.+.+... ..+.+..
T Consensus 19 ~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~-~~L~~~l~~~-~~~~~~~ 96 (323)
T cd05595 19 TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG-GELFFHLSRE-RVFTEER 96 (323)
T ss_pred CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCC-CcHHHHHHHc-CCCCHHH
Confidence 4566899988765322 112233466667777899998875 4678999999998 8887655431 1222222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+.......... . .... ..
T Consensus 97 ~~~~--------~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-~-~~~~--------gt 158 (323)
T cd05595 97 ARFY--------GAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT-M-KTFC--------GT 158 (323)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCc-c-cccc--------CC
Confidence 2222 4578899999999988 9999999999999999999999986421110000 0 0000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... ..+.+.||||+|++++|+++|..|+.
T Consensus 159 ~~y~aPE~~~~~-----------~~~~~~DiwSlGvil~ell~g~~Pf~ 196 (323)
T cd05595 159 PEYLAPEVLEDN-----------DYGRAVDWWGLGVVMYEMMCGRLPFY 196 (323)
T ss_pred cCcCCcccccCC-----------CCCchhchhhhHHHHHHHHhCCCCCC
Confidence 237888886321 12345799999999999999888874
No 365
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=98.86 E-value=2.7e-11 Score=134.12 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=139.2
Q ss_pred CCCccEEEEeecccccc----------CCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc
Q 001416 664 AAPQNFQLYSWETFQPV----------GGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT 728 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~----------~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~ 728 (1081)
|..+++|.+........ ..+..|++.+.-.+|.|++.+. ....++|+||++. |+|.+.+.+. .
T Consensus 26 ~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~ 103 (272)
T cd06629 26 GEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPG-GSIGSCLRTY-G 103 (272)
T ss_pred CceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCCC-CcHHHHHhhc-c
Confidence 45578887765332221 2244566778888899998887 4678899999998 8888776542 2
Q ss_pred ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcch
Q 001416 729 GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPML 807 (1081)
Q Consensus 729 ~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~ 807 (1081)
.+++.....+ +..+..|+.|||...+ ||.++.+|++++....+|++|||+...................
T Consensus 104 ~l~~~~~~~~--------~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~-- 173 (272)
T cd06629 104 RFEEQLVRFF--------TEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGS-- 173 (272)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCC--
Confidence 3333322222 3467789999999888 9999999999999999999999987532111000000000111
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
..|.|||+..... ...+.+.|+||+|+++++++.|..|+...... +... ......
T Consensus 174 ------~~y~~PE~~~~~~---------~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-~~~~------~~~~~~--- 228 (272)
T cd06629 174 ------VFWMAPEVIHSYS---------QGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI-AAMF------KLGNKR--- 228 (272)
T ss_pred ------ccccCHHHhcccc---------CCCCccchhHHHHHHHHHHHhCCCCCcCcchH-HHHH------Hhhccc---
Confidence 1266777653211 11234579999999999999988777421110 0000 000000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
...++ +......+.....+++..|+..+|..||+++.|.
T Consensus 229 ---------~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 267 (272)
T cd06629 229 ---------SAPPI-PPDVSMNLSPVALDFLNACFTINPDNRPTARELL 267 (272)
T ss_pred ---------cCCcC-CccccccCCHHHHHHHHHHhcCChhhCCCHHHHh
Confidence 00000 0111123456677899999999999999988764
No 366
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=98.86 E-value=3.7e-11 Score=131.56 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=137.1
Q ss_pred CCCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccc-cceeeEeee
Q 001416 662 AEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQ 736 (1081)
Q Consensus 662 ~~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~ 736 (1081)
+.++.+++|.+.-+.. ...+..|+..++-.+|.|++++. ....++|+|||+. |+|.+.+.... ..+.+....
T Consensus 27 ~~~~~~~iK~~~~~~~--~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~-~~L~~~l~~~~~~~~~~~~~~ 103 (254)
T cd05083 27 YTGQKVAVKNIKCDVT--AQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSK-GNLVNFLRTRGRALVSVIQLL 103 (254)
T ss_pred cCCCceEEEeecCcch--HHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCC-CCHHHHHHhcCcCCCCHHHHH
Confidence 4566788887743211 11233455556666788888877 5677899999998 89887765422 112222222
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..+++|+.|||...+ ||.++++|++++....+|++|||+......... ....+..
T Consensus 104 ~~--------~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~-------- 162 (254)
T cd05083 104 QF--------SLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVD-----NSKLPVK-------- 162 (254)
T ss_pred HH--------HHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccccCC-----CCCCCce--------
Confidence 22 4467889999999888 999999999999999999999998654211100 0011122
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
+.|||.... ...+.+.|+||+|++++++++ |..|+...... +... ....+
T Consensus 163 y~~pe~~~~-----------~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~--~~~~-------~~~~~--------- 213 (254)
T cd05083 163 WTAPEALKH-----------KKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLK--EVKE-------CVEKG--------- 213 (254)
T ss_pred ecCHHHhcc-----------CCcCchhhHHHHHHHHHHHHhCCCCCCccCCHH--HHHH-------HHhCC---------
Confidence 567775421 112345799999999999876 44444321110 0000 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
..++. + -.++....++++.||..+|..||.+..|...|++
T Consensus 214 --~~~~~--~---~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 214 --YRMEP--P---EGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred --CCCCC--C---CcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 00000 0 1234556689999999999999999999988764
No 367
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=98.86 E-value=2.1e-11 Score=142.19 Aligned_cols=114 Identities=5% Similarity=-0.043 Sum_probs=84.0
Q ss_pred CCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+..+.. .....+..|.+-++-.+|.|++.+. ..+.++|+|||+. |+|.+.+.+.. .+.+...
T Consensus 26 ~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~g-g~L~~~l~~~~-~~~e~~~ 103 (381)
T cd05626 26 HALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG-GDMMSLLIRME-VFPEVLA 103 (381)
T ss_pred CCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCC-CcHHHHHHhcC-CCCHHHH
Confidence 34578998876432 1222345566667778899999987 5678999999999 88887765421 1221111
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeee
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALI 787 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~ 787 (1081)
..+ +..++.|+.|||...| |+.+|++|++++....+|++|||+.
T Consensus 104 ~~~--------~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~ 148 (381)
T cd05626 104 RFY--------IAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLC 148 (381)
T ss_pred HHH--------HHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence 112 4567889999999999 9999999999999999999999984
No 368
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=98.86 E-value=2.3e-11 Score=138.79 Aligned_cols=165 Identities=5% Similarity=-0.161 Sum_probs=114.1
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+...... ....+..|.+.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.+...
T Consensus 43 ~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~~~ 120 (329)
T PTZ00263 43 GEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVG-GELFTHLRKA-GRFPNDVA 120 (329)
T ss_pred CCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCC-ChHHHHHHHc-CCCCHHHH
Confidence 456899988765432 222345566677778899999887 4678999999999 8888766542 11111111
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..++.|+.|||...+ |+.+|++|+++|....+|++|||+......... ......
T Consensus 121 ~~~--------~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-----~~~gt~-------- 179 (329)
T PTZ00263 121 KFY--------HAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTF-----TLCGTP-------- 179 (329)
T ss_pred HHH--------HHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCcc-----eecCCh--------
Confidence 112 4567889999999998 999999999999999999999998753211100 000111
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+.... ..+.+.||||+|++++++++|..||.
T Consensus 180 ~y~aPE~~~~~-----------~~~~~~DiwslG~il~elltg~~pf~ 216 (329)
T PTZ00263 180 EYLAPEVIQSK-----------GHGKAVDWWTMGVLLYEFIAGYPPFF 216 (329)
T ss_pred hhcCHHHHcCC-----------CCCCcceeechHHHHHHHHcCCCCCC
Confidence 26788875321 12345799999999999999888874
No 369
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=98.85 E-value=1e-11 Score=139.48 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=142.9
Q ss_pred CCCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 663 EAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
.|..+++|.++-+.......+..|+..++-.+|.|++.+. ....++|+||++. ++|.+.+.+ ..+.+.....
T Consensus 45 ~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~-~~L~~~~~~--~~~~~~~~~~ 121 (297)
T cd06659 45 SGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG-GALTDIVSQ--TRLNEEQIAT 121 (297)
T ss_pred CCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC-CCHHHHHhh--cCCCHHHHHH
Confidence 4556889888655443333355566667777899988776 4678999999998 888776543 2233332222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ |+.++.+|++++..-.+|++|||+......+.. ......... .|
T Consensus 122 ~--------~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~--------~y 183 (297)
T cd06659 122 V--------CESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTP--------YW 183 (297)
T ss_pred H--------HHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--cccceecCc--------cc
Confidence 3 5578889999999988 999999999999999999999998653211110 000011111 26
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.|||.... ...+.+.||||+|++++|++.|..|+...... +... . ....
T Consensus 184 ~aPE~~~~-----------~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-~~~~------~--~~~~----------- 232 (297)
T cd06659 184 MAPEVISR-----------TPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV-QAMK------R--LRDS----------- 232 (297)
T ss_pred cCHHHHcc-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHH------H--Hhcc-----------
Confidence 67776532 11234579999999999999988877421110 0000 0 0000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH--HHHhcCc
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ--FMLGMGY 944 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~--~l~~~~~ 944 (1081)
+...............++++.|+..+|..||....+.. |+.+.++
T Consensus 233 ---~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~~ 279 (297)
T cd06659 233 ---PPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTGL 279 (297)
T ss_pred ---CCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccCCC
Confidence 00000001122344568999999999999999998875 4444443
No 370
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=98.85 E-value=3.1e-11 Score=133.09 Aligned_cols=225 Identities=11% Similarity=-0.003 Sum_probs=135.5
Q ss_pred CCCccEEEEeeccccc------cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceee
Q 001416 664 AAPQNFQLYSWETFQP------VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW 732 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l------~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w 732 (1081)
|+.+++|...-+.... ..++..|+..+.-.+|.|++.+. ....++++|||+. ++|.+.+.+. ..+.+
T Consensus 24 ~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~ 101 (265)
T cd06631 24 GQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPG-GSISSILNRF-GPLPE 101 (265)
T ss_pred CCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCC-CcHHHHHHhc-CCCCH
Confidence 4457888765432211 12234455555556788888887 4578999999998 8888776442 22333
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..++.|+.|||...+ ||.++++|++++++..+|++|||+...-........ .+....-+.
T Consensus 102 ~~~~~~--------~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~----~~~~~~~~~ 169 (265)
T cd06631 102 PVFCKY--------TKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGT----HSNMLKSMH 169 (265)
T ss_pred HHHHHH--------HHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccccc----ccccccccC
Confidence 322223 4678889999999888 999999999999999999999998653211000000 000000011
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEe
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
....|.|||..... ....+.||||+|++++++++|..|+...... ...+.......
T Consensus 170 ~~~~~~~pe~~~~~-----------~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~-------~~~~~~~~~~~------ 225 (265)
T cd06631 170 GTPYWMAPEVINES-----------GYGRKSDIWSIGCTVFEMATGKPPLASMDRL-------AAMFYIGAHRG------ 225 (265)
T ss_pred CCccccChhhhcCC-----------CCcchhhHHHHHHHHHHHHhCCCccccCChH-------HHHHHhhhccC------
Confidence 12237788875321 1234579999999999999988877421100 00000000000
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+.+.-.......++++.|+..+|..||+...+.
T Consensus 226 ----------~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l 260 (265)
T cd06631 226 ----------LMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLL 260 (265)
T ss_pred ----------CCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 00001112334557899999999999999988764
No 371
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=98.85 E-value=4.3e-11 Score=135.94 Aligned_cols=221 Identities=6% Similarity=-0.117 Sum_probs=138.3
Q ss_pred CCCCccEEEEeeccccccC--CCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 663 EAAPQNFQLYSWETFQPVG--GLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~--~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
.|..+++|.+...+..... +...|.+.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.. ...+.+...
T Consensus 23 ~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~-~~~l~~~~~ 100 (318)
T cd05582 23 AGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRG-GDLFTRLSK-EVMFTEEDV 100 (318)
T ss_pred CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCC-CcHHHHHHH-cCCCCHHHH
Confidence 4666899988765543221 133466667777899999886 4678999999998 888766543 122333222
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..++.|+.|||...+ |+.+|++|++++..-.+|++|||+............ ..... .
T Consensus 101 ~~~--------~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~--~~~g~--------~ 162 (318)
T cd05582 101 KFY--------LAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAY--SFCGT--------V 162 (318)
T ss_pred HHH--------HHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCcee--cccCC--------h
Confidence 222 4578899999999988 999999999999999999999998653211100000 00011 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|.|||+.... ..+.+.||||+|++++|+++|..|+...... +.. . .....
T Consensus 163 ~y~aPE~~~~~-----------~~~~~~DiwslG~il~el~tg~~p~~~~~~~--~~~-----~--~i~~~--------- 213 (318)
T cd05582 163 EYMAPEVVNRR-----------GHTQSADWWSFGVLMFEMLTGSLPFQGKDRK--ETM-----T--MILKA--------- 213 (318)
T ss_pred hhcCHHHHcCC-----------CCCCccceeccceEeeeeccCCCCCCCCCHH--HHH-----H--HHHcC---------
Confidence 26778875321 1234579999999999999988887422110 000 0 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHH--HHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDD--LAQFML 940 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--i~~~l~ 940 (1081)
.+.++ -.......++++.|+..+|..||.-.. +...+.
T Consensus 214 ---~~~~p-----~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~ 253 (318)
T cd05582 214 ---KLGMP-----QFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKR 253 (318)
T ss_pred ---CCCCC-----CCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhC
Confidence 00000 012334568999999999999998544 444443
No 372
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=98.85 E-value=5.6e-11 Score=130.66 Aligned_cols=220 Identities=11% Similarity=0.069 Sum_probs=137.2
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCccccccccccccc-ccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~~~~t 741 (1081)
+++|.+...... ..+...|++.++-.+|.|++.+. ....+++++|++. |+|.+.+... ...++|.....+
T Consensus 33 ~~iK~~~~~~~~-~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~--- 107 (260)
T cd05073 33 VAVKTMKPGSMS-VEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAK-GSLLDFLKSDEGSKQPLPKLIDF--- 107 (260)
T ss_pred EEEEecCCChhH-HHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCC-CcHHHHHHhCCccccCHHHHHHH---
Confidence 566655432211 12234466667777888888876 3467899999998 8888776432 122334333333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..++.|+.|||...+ |+.++++|++++.+..+|++|||+...-........ .....+.. ++|||
T Consensus 108 -----~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~-~~~~~~~~--------y~~PE 173 (260)
T cd05073 108 -----SAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR-EGAKFPIK--------WTAPE 173 (260)
T ss_pred -----HHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccc-cCCccccc--------ccCHh
Confidence 5578899999999998 999999999999999999999998764211100000 00011112 66777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
+... ...+.+.|+||+|++++++++ |..|+.....+ .... ....+ +
T Consensus 174 ~~~~-----------~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~~~-------~~~~~-------------~ 220 (260)
T cd05073 174 AINF-----------GSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIR-------ALERG-------------Y 220 (260)
T ss_pred Hhcc-----------CCcCccccchHHHHHHHHHHhcCCCCCCCCCHH--HHHH-------HHhCC-------------C
Confidence 6521 113345799999999999987 55565421111 0000 00000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
++..+ -..+....+++..|+..+|..||+++.+...|+.
T Consensus 221 ~~~~~---~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 221 RMPRP---ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred CCCCc---ccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 11100 1233456789999999999999999999998875
No 373
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=98.85 E-value=3.4e-11 Score=137.48 Aligned_cols=238 Identities=7% Similarity=-0.042 Sum_probs=141.4
Q ss_pred CCCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+..... +....+..|.+.+.=..|.|++.+. ..+.++|+|||+. |+|.+.+......+.+..
T Consensus 25 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~l~~~~ 103 (330)
T cd05601 25 TGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPG-GDLLSLLNRYEDQFDEDM 103 (330)
T ss_pred CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCC-CCHHHHHHHhcCCCCHHH
Confidence 355689998876543 1112233444555556788888776 4578999999999 898877654222232222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+...-......... ......
T Consensus 104 ~~~~--------~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~-~~~gt~------- 167 (330)
T cd05601 104 AQFY--------LAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSK-LPVGTP------- 167 (330)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeee-cccCCc-------
Confidence 2222 4578889999999888 9999999999999999999999987642211110000 000111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.|.|||+....... .+...+.+.||||+|++++++++|..|+...... +.+. .+... .+
T Consensus 168 -~y~aPE~~~~~~~~-----~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~-~~~~--------~i~~~-----~~- 226 (330)
T cd05601 168 -DYIAPEVLTTMNGD-----GKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSA-KTYN--------NIMNF-----QR- 226 (330)
T ss_pred -cccCHHHhcccccc-----ccCCCCCcceeecccceeeeeccCCCCCCCCCHH-HHHH--------HHHcC-----CC-
Confidence 27788876422111 0111234579999999999999998887522110 0000 00000 00
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH--HHHhcCcHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ--FMLGMGYAT 946 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~--~l~~~~~~~ 946 (1081)
...+|- .........++++.|.. +|..||.+..+.. |+++...+.
T Consensus 227 --~~~~~~-----~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~~~~~ 273 (330)
T cd05601 227 --FLKFPE-----DPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKIDWNN 273 (330)
T ss_pred --ccCCCC-----CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCCCHHH
Confidence 000000 01223345678888886 8999999998763 455444333
No 374
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.3e-07 Score=107.27 Aligned_cols=193 Identities=18% Similarity=0.161 Sum_probs=148.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEEecc--cccceEEEEEe-----------------eeCCCCCEEEEEeCCCcE
Q 001416 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG--HKGSISCLMTF-----------------MASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 179 p~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~--h~~~V~~l~w~-----------------~~s~d~~~l~sgs~Dg~V 239 (1081)
|...++|..+.||.+++||..+++....|.+. -.+.-++..|- ..+.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 55789999999999999999988887777522 23344455553 123445578888899999
Q ss_pred EEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEE
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 240 ~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
-++++..++.... .+-..|.++|+++.++. +-..|-|++.|+.+..|+...++.++.+ .+....+.+
T Consensus 83 ~~ys~~~g~it~~----~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~------~~~~~~~~s 149 (541)
T KOG4547|consen 83 LLYSVAGGEITAK----LSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIW------KEQKPLVSS 149 (541)
T ss_pred EEEEecCCeEEEE----EecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeee------ccCCCccce
Confidence 9999998875443 23467999999999987 8889999999999999999998887776 455567789
Q ss_pred EeecCCCCEE-EEECCceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC-----CCeEEEEEECCCe
Q 001416 320 HPRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL-----QPHLVATGTNVGV 393 (1081)
Q Consensus 320 v~~spd~~ll-s~s~D~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~-----~~~llatgs~dG~ 393 (1081)
++.+||+.++ ++|...++||+++ .+.+.+|.+|.. +|.+++|.-+ |.+++.+...+..
T Consensus 150 l~is~D~~~l~~as~~ik~~~~~~---------------kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 150 LCISPDGKILLTASRQIKVLDIET---------------KEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred EEEcCCCCEEEeccceEEEEEccC---------------ceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccc
Confidence 9999999966 7888899999996 455678999998 9999999876 5566555544444
Q ss_pred EEEEeCCC
Q 001416 394 IISEFDPR 401 (1081)
Q Consensus 394 Il~iwd~~ 401 (1081)
+ .+|-..
T Consensus 214 i-~~w~v~ 220 (541)
T KOG4547|consen 214 I-TVWVVE 220 (541)
T ss_pred e-eEEEEE
Confidence 3 567543
No 375
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=98.84 E-value=6.1e-11 Score=130.96 Aligned_cols=221 Identities=11% Similarity=-0.016 Sum_probs=133.5
Q ss_pred ccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc------cceeeEe
Q 001416 667 QNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA------TGAVWHR 734 (1081)
Q Consensus 667 ~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~------~~~~w~~ 734 (1081)
++||.+..... .-..+...|+..++-.+|.|++.+. ....++|++|++. |+|.+.+.+.. ..+.|..
T Consensus 29 ~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~~ 107 (269)
T cd05044 29 VAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEG-GDLLSYLRDARVERFGPPLLTLKE 107 (269)
T ss_pred ehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCC-CcHHHHHHHhhhcccCCccccHHH
Confidence 56666543221 1122244466667777899999887 4568999999998 88887665311 1122322
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhH-----hhhccceeeeeecccchhhhcccccCCcchh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRA-----VAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rw-----v~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
...+ +..+++|+.|||...+ |+.++.+|++++... ++|++|||+...-......... .....
T Consensus 108 ~~~~--------~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~---~~~~~- 175 (269)
T cd05044 108 LLDI--------CLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKE---GEGLL- 175 (269)
T ss_pred HHHH--------HHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccC---cccCC-
Confidence 2223 4577889999999888 999999999999887 9999999986532111000000 00000
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
..-+.|||.... + ..+.+.||||+|++++++++ |..|+...... +.. ..+..+
T Consensus 176 ----~~~y~aPE~~~~----------~-~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~--~~~-------~~~~~~-- 229 (269)
T cd05044 176 ----PVRWMAPESLLD----------G-KFTTQSDVWSFGVLMWEILTLGQQPYPALNNQ--EVL-------QHVTAG-- 229 (269)
T ss_pred ----CccccCHHHHcc----------C-CcccchhHHHHHHHHHHHHHcCCCCCcccCHH--HHH-------HHHhcC--
Confidence 001456665431 1 12345799999999999886 66555311100 000 000000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
. .+. ....++....+++..|+..+|..||+++.|.+.|+
T Consensus 230 ------~-----~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 230 ------G-----RLQ---KPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred ------C-----ccC---CcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 0 000 00122345568999999999999999999998875
No 376
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=98.84 E-value=5.3e-11 Score=135.63 Aligned_cols=169 Identities=8% Similarity=-0.074 Sum_probs=111.2
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+..+... -+.+...|.+.+.-..|.|++.+. ....++|+|||+. |+|.+.+.+ ...+.+..
T Consensus 19 ~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~-~~L~~~l~~-~~~l~~~~ 96 (325)
T cd05594 19 TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG-GELFFHLSR-ERVFSEDR 96 (325)
T ss_pred CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCC-CcHHHHHHh-cCCCCHHH
Confidence 4566899988765322 112233455556666788887765 4578999999998 888765543 12233322
Q ss_pred eeeeEeccCceEEEeeeCCccccch-hhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDV-ETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~-s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
...+ +..++.|+.|||. ..+ |+.+|++|++++....+|++|||+............ ... -
T Consensus 97 ~~~~--------~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~--~~~--------g 158 (325)
T cd05594 97 ARFY--------GAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK--TFC--------G 158 (325)
T ss_pred HHHH--------HHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccc--ccc--------C
Confidence 2222 4578899999997 556 999999999999999999999998643111100000 000 1
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
...|.|||+... ...+.+.||||+|++++++++|..||.
T Consensus 159 t~~y~aPE~~~~-----------~~~~~~~DiwslG~il~el~tG~~Pf~ 197 (325)
T cd05594 159 TPEYLAPEVLED-----------NDYGRAVDWWGLGVVMYEMMCGRLPFY 197 (325)
T ss_pred CcccCCHHHHcc-----------CCCCCccccccccceeeeeccCCCCCC
Confidence 112678887532 112345799999999999999988874
No 377
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.84 E-value=1.3e-11 Score=134.20 Aligned_cols=167 Identities=8% Similarity=-0.026 Sum_probs=123.4
Q ss_pred CCCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 663 EAAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
+|+.+|||.++.+++ ++.--...|++.++..+|+|+|+|. ...+++|||||.- |.|.+-+.+- ..+.-..-
T Consensus 34 ~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~g-GDLs~yi~~~-~~l~e~t~ 111 (429)
T KOG0595|consen 34 SGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNG-GDLSDYIRRR-GRLPEATA 111 (429)
T ss_pred CCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCC-CCHHHHHHHc-CCCCHHHH
Confidence 456799999999853 3333367788889999999999999 6789999999998 8888665542 12333323
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhh------HhhhccceeeeeecccchhhhcccccC-Ccch
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSR------AVAEHGELALIAVESSQTAAQDRIKLR-PPML 807 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~r------wv~k~~d~gl~~~~~~~~~~~~~~~~~-~~~~ 807 (1081)
-.| +.-+..||.+||.-.| |--||+.|.+++.- -++||+|||+-.+-.... ....++ +|+
T Consensus 112 r~F--------m~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~---~a~tlcGSpl- 179 (429)
T KOG0595|consen 112 RHF--------MQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS---MAETLCGSPL- 179 (429)
T ss_pred HHH--------HHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchh---HHHHhhCCcc-
Confidence 345 6678889999999888 99999999999986 789999999986532111 001111 233
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.+|||+.+... . ..+.|+||-|+|+++..+|.-||.
T Consensus 180 --------YMAPEV~~~~~------Y-----dAKADLWSiG~Ilyq~l~g~~Pf~ 215 (429)
T KOG0595|consen 180 --------YMAPEVIMSQQ------Y-----DAKADLWSIGTILYQCLTGKPPFD 215 (429)
T ss_pred --------ccCHHHHHhcc------c-----cchhhHHHHHHHHHHHHhCCCCcc
Confidence 58999976421 1 234799999999999999998886
No 378
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=98.84 E-value=4.5e-11 Score=132.69 Aligned_cols=223 Identities=9% Similarity=-0.044 Sum_probs=134.8
Q ss_pred CCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc---------c
Q 001416 665 APQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT---------G 729 (1081)
Q Consensus 665 ~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~---------~ 729 (1081)
..+++|.+.-... .....+..|+..+.-.+|.|++.+. ....++|+|||+. |+|.+.+..... .
T Consensus 37 ~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~l~~~~~~~~~~~~~~~ 115 (277)
T cd05032 37 TRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAK-GDLKSYLRSRRPEAENNPGLGP 115 (277)
T ss_pred eeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCC-CCHHHHHHhcccchhhccCCCC
Confidence 4467777642211 1111233455555556788999887 4678999999998 898876643111 1
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.|.....+ +..+..|+.|||...+ |+.++.+|++++....+|++|||+...-..............+..
T Consensus 116 ~~~~~~~~~--------~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~- 186 (277)
T cd05032 116 PTLQKFIQM--------AAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVR- 186 (277)
T ss_pred CCHHHHHHH--------HHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCcccc-
Confidence 122222222 4578889999999888 999999999999999999999998643111000000000001111
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
|.|||.... ...+.+.||||+|++++|+++ |..|+.. .+.++... . ...+
T Consensus 187 -------y~aPE~~~~-----------~~~~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~~-----~--~~~~-- 237 (277)
T cd05032 187 -------WMAPESLKD-----------GVFTTKSDVWSFGVVLWEMATLAEQPYQG--LSNEEVLK-----F--VIDG-- 237 (277)
T ss_pred -------ccCHHHHhc-----------CCCCcccchHHHHHHHHHhhccCCCCCcc--CCHHHHHH-----H--HhcC--
Confidence 667776421 113445799999999999986 5555531 11111000 0 0000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
. .++ +...++....++++.||..+|..||++..|...|+
T Consensus 238 -------~--~~~-----~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (277)
T cd05032 238 -------G--HLD-----LPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK 276 (277)
T ss_pred -------C--CCC-----CCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence 0 000 11123556679999999999999999999988875
No 379
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=98.84 E-value=6.2e-11 Score=129.42 Aligned_cols=224 Identities=9% Similarity=-0.020 Sum_probs=137.3
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.+.-.... -...+..|++.++-.+|.|++.+. ....++|++|++. ++|.+.+......+.+.....
T Consensus 19 ~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~~l~~~l~~~~~~~~~~~~~~ 97 (251)
T cd05041 19 NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPG-GSLLTFLRKKKNRLTVKKLLQ 97 (251)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCC-CcHHHHHHhcCCCCCHHHHHH
Confidence 455788876554332 222345566666677899998876 4567899999998 888776644222233332222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ ...+..|+.|||...+ |+.++++|++++..-.+|++|||+..................+.. +
T Consensus 98 ~--------~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~--------y 161 (251)
T cd05041 98 M--------SLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIK--------W 161 (251)
T ss_pred H--------HHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceec--------c
Confidence 2 4466788999999888 999999999999999999999998754221111100000001112 5
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
+|||.... ...+.+.|+||+|++++++++ |..|+...... ... .. ....
T Consensus 162 ~~PE~~~~-----------~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~--~~~-----~~--~~~~---------- 211 (251)
T cd05041 162 TAPEALNY-----------GRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ--QTR-----ER--IESG---------- 211 (251)
T ss_pred CChHhhcc-----------CCCCcchhHHHHHHHHHHHHhccCCCCccCCHH--HHH-----HH--HhcC----------
Confidence 67776421 112345799999999999887 43444211110 000 00 0000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
..+.. .-.++....+++..|+..+|..||....+...|+
T Consensus 212 ---~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 212 ---YRMPA---PQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred ---CCCCC---CccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 00000 1124557789999999999999999999887765
No 380
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=98.84 E-value=4.3e-11 Score=133.09 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=136.4
Q ss_pred ccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|.+.-+.. ...+.+..|...+.-..|.|++.+. .+..+++++|++. |+|.+.+......+.+.....+
T Consensus 39 va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-g~l~~~l~~~~~~~~~~~~~~~--- 114 (279)
T cd05109 39 VAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMPY-GCLLDYVRENKDRIGSQDLLNW--- 114 (279)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCCC-CCHHHHHhhccCCCCHHHHHHH---
Confidence 57776643221 1222344455555666788998876 5677899999999 9988766432222333333333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+.++..|+.|||...+ |+.+|++|.+++..-.+|++|||+...-..............+.. |.|||
T Consensus 115 -----~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~--------y~~PE 181 (279)
T cd05109 115 -----CVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIK--------WMALE 181 (279)
T ss_pred -----HHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchh--------hCCHH
Confidence 5688899999999988 999999999998877899999998764221111000000000111 66777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
.... .....+.||||||++++|+++ |..|+.. .+.+... . . +... ...
T Consensus 182 ~~~~-----------~~~~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~----~-~--~~~~-----------~~~ 230 (279)
T cd05109 182 SILH-----------RRFTHQSDVWSYGVTVWELMTFGAKPYDG--IPAREIP----D-L--LEKG-----------ERL 230 (279)
T ss_pred Hhcc-----------CCCCchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHH----H-H--HHCC-----------CcC
Confidence 6421 112345799999999999876 5455431 1100000 0 0 0000 000
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+. ...+.....+++..||..+|..||.+..+.+.|+.+
T Consensus 231 ~~-----~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~ 268 (279)
T cd05109 231 PQ-----PPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRM 268 (279)
T ss_pred CC-----CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 00 113445567899999999999999999999888765
No 381
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=98.84 E-value=4.4e-11 Score=132.11 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=136.1
Q ss_pred CCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccce--eeEeeee
Q 001416 665 APQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGA--VWHRRQL 737 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~--~w~~~~~ 737 (1081)
..+++|.+.....+-...+..|++.+.-.+|.|++.+. ....++|++|++. ++|.+.+.+....+ ++.....
T Consensus 34 ~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~ 112 (268)
T cd06624 34 VRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPG-GSLSALLRSKWGPLKDNEQTIIF 112 (268)
T ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCC-CCHHHHHHHhcccCCCcHHHHHH
Confidence 34677776654433333444556666667899999987 4678899999998 89988765422212 2222222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhh-hHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQS-RAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~-rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
+ +..+..|+.|||...+ |+.++++|+++|. .-.+|++|||+............ .......
T Consensus 113 ~--------~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~-------- 174 (268)
T cd06624 113 Y--------TKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTE--TFTGTLQ-------- 174 (268)
T ss_pred H--------HHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccc--cCCCCcc--------
Confidence 2 4478899999999999 9999999999976 56899999998764321111000 0011122
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
|.|||...... ...+.+.||||+|+++++++.|..|+....-+. ...+..+....
T Consensus 175 ~~aPE~~~~~~---------~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~------~~~~~~~~~~~---------- 229 (268)
T cd06624 175 YMAPEVIDKGP---------RGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ------AAMFKVGMFKI---------- 229 (268)
T ss_pred ccChhhhcccc---------ccCCchhhhHHHHHHHHHHHhCCCCCccccChh------hhHhhhhhhcc----------
Confidence 67888753210 012234799999999999998877764211110 00000000000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.+.+...+.....++++.|+..+|..||.+..|.
T Consensus 230 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll 263 (268)
T cd06624 230 -------HPEIPESLSAEAKNFILRCFEPDPDKRASAHDLL 263 (268)
T ss_pred -------CCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHH
Confidence 0011112344566899999999999999998874
No 382
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=98.84 E-value=4.5e-11 Score=134.00 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=142.8
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
|..++||.++-........+..|+..++-..|.|++.+. ..+.++|+|||+. ++|.+++.+ ..+.+.....+
T Consensus 45 ~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~--~~~~~~~~~~~ 121 (292)
T cd06657 45 GKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG-GALTDIVTH--TRMNEEQIAAV 121 (292)
T ss_pred CeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCC-CcHHHHHhc--CCCCHHHHHHH
Confidence 445788876533322222244466667777899988887 5788999999999 888877644 23343333333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+.+|+.|||...+ ||.++++|+++|....++++|||+...-..+.... .... ....|.
T Consensus 122 --------~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~--~~~~--------~~~~y~ 183 (292)
T cd06657 122 --------CLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR--KSLV--------GTPYWM 183 (292)
T ss_pred --------HHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccccc--cccc--------cCcccc
Confidence 5678889999999888 99999999999999999999999765322111100 0000 112267
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
|||..... ..+.+.|+||+|++++++++|..|+...... +... . ....
T Consensus 184 ~pE~~~~~-----------~~~~~~Dv~slGvil~el~tg~~p~~~~~~~-~~~~----~----~~~~------------ 231 (292)
T cd06657 184 APELISRL-----------PYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-KAMK----M----IRDN------------ 231 (292)
T ss_pred CHHHhcCC-----------CCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHH----H----HHhh------------
Confidence 77764211 1234579999999999999988876421100 0000 0 0000
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH--HHHhcCcHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ--FMLGMGYAT 946 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~--~l~~~~~~~ 946 (1081)
.+.....+ ........+++..|+..+|..||....+.. ||.+.+.+.
T Consensus 232 -~~~~~~~~-~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~~~~ 280 (292)
T cd06657 232 -LPPKLKNL-HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPS 280 (292)
T ss_pred -CCcccCCc-ccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccCCCc
Confidence 00000000 022334568899999999999999998864 677766544
No 383
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=98.84 E-value=4.6e-11 Score=133.18 Aligned_cols=168 Identities=7% Similarity=-0.090 Sum_probs=113.2
Q ss_pred CCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
|..+++|.+..+.. .....+..|++.++-.+|.|++.+. ....++|++||+. +|.+.+.+....+++....
T Consensus 25 g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~--~l~~~~~~~~~~~~~~~~~ 102 (284)
T cd07839 25 HEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCDQ--DLKKYFDSCNGDIDPEIVK 102 (284)
T ss_pred CcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCCC--CHHHHHHhcCCCCCHHHHH
Confidence 45578888766432 2233455677777778899999877 5678999999974 6665544322334444433
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..+++|+.|||...+ |+.++++|++++....+|++|||+...-...... .. ...... .
T Consensus 103 ~~--------~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~-~~~~~~--------~ 164 (284)
T cd07839 103 SF--------MFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRC-YS-AEVVTL--------W 164 (284)
T ss_pred HH--------HHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCC-cC-CCcccc--------C
Confidence 44 6688999999999999 9999999999999999999999986531111000 00 000111 2
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCccee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAV 861 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~ 861 (1081)
|.|||+.... ...+.+.||||+|++++++++|+.|+
T Consensus 165 y~aPE~~~~~----------~~~~~~~DiwslG~il~~l~tg~~p~ 200 (284)
T cd07839 165 YRPPDVLFGA----------KLYSTSIDMWSAGCIFAELANAGRPL 200 (284)
T ss_pred CcChHHHhCC----------cccCcHHHHHHHHHHHHHHHhcCCCC
Confidence 6778764211 11234579999999999999988875
No 384
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.3e-07 Score=107.19 Aligned_cols=216 Identities=10% Similarity=0.137 Sum_probs=147.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEeccCCCeEEEeecCCCCCceeeecCCceEEEEEeCCeEEE
Q 001416 20 HPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1081)
Q Consensus 20 sp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~lasg~~d~~~~~~~~l~g~~V~~v~f~Dg~Iri 99 (1081)
.|.+.++|....||.+||||..+++...+|...- +.. + .++-..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-------~~s---------------------~--------t~~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-------SLS---------------------G--------TCTYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch-------hcc---------------------C--------cceeEE
Confidence 3456799999999999999999999888877321 000 1 222333
Q ss_pred EEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecCCCcccccccccCCCCeeEEEEeecccc
Q 001416 100 WQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAV 178 (1081)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~s 178 (1081)
|.+.-+............ ..-+. +...++-|...+.+ .|+...++.........|.+.|.++.+ +
T Consensus 46 w~L~~~~s~~k~~~~~~~--------~~~s~-~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~-----~ 111 (541)
T KOG4547|consen 46 WGLSADYSPMKWLSLEKA--------KKASL-DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD-----A 111 (541)
T ss_pred EEEEeccchHHHHhHHHH--------hhccC-CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec-----c
Confidence 443222210000000000 00112 23355555555554 588887765555555678899999999 5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCccccccccee
Q 001416 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1081)
Q Consensus 179 p~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~ 258 (1081)
.+-..|.+++.|+.+..|+....+.++.+. +.+..+.+++ .+||+..++++| ++|++||+++++.+. +
T Consensus 112 ~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~---is~D~~~l~~as--~~ik~~~~~~kevv~------~ 179 (541)
T KOG4547|consen 112 QRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLC---ISPDGKILLTAS--RQIKVLDIETKEVVI------T 179 (541)
T ss_pred cccCceEecCCceeEEEEecccceeeeeec-cCCCccceEE---EcCCCCEEEecc--ceEEEEEccCceEEE------E
Confidence 677789999999999999999999999887 7788888888 699999999776 579999999988544 5
Q ss_pred ecccCCcEEEEEEeee-cC-CCCEEEE-EECCCeEEEEECCC
Q 001416 259 LKAHDGGVVAVELSRV-MG-GSPQLIT-IGADKTLAIWDTVS 297 (1081)
Q Consensus 259 l~~h~~~V~~v~fsp~-~~-~~~~Lvs-gs~Dg~V~iWDl~t 297 (1081)
+.||.++|.++.|-.. .+ .|.++++ ...+.-+.+|-+..
T Consensus 180 ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7999999999999872 01 1445544 44566677776543
No 385
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=3.2e-07 Score=108.36 Aligned_cols=179 Identities=17% Similarity=0.100 Sum_probs=113.8
Q ss_pred CCCeeecccCCCCCeEEEEEecC---cEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEE-EEECCCeEEE
Q 001416 120 TSGFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA-FGSSDGVIRV 195 (1081)
Q Consensus 120 ~~~V~sl~fsp~g~~~l~s~s~d---~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~-sgs~Dg~I~l 195 (1081)
...+.+.+|+|||+.++.+...+ .+.+||+.+++...+. .......+.+| +|||+.|+ +.+.+|...|
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~-----SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAW-----SPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEE-----CCCCCEEEEEEccCCCceE
Confidence 45688899999998655544332 2556899887543332 22345567899 78999876 4667887777
Q ss_pred EEc--CCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeC-CCcEEEEEcC--CCCcccccccceeecccCCcEEEEE
Q 001416 196 LSM--ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSAD--HGQDSRELVPKLSLKAHDGGVVAVE 270 (1081)
Q Consensus 196 wd~--~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~-Dg~V~vWd~~--~~~~~~~~~~~~~l~~h~~~V~~v~ 270 (1081)
|.+ .++. ...+. .|........ ++|||+.|+..+. ++...+|.++ ++.. . ..++.+ ......+
T Consensus 267 y~~d~~~~~-~~~lt-~~~~~~~~~~---wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~----~lt~~g--~~~~~~~ 334 (427)
T PRK02889 267 YTVNADGSG-LRRLT-QSSGIDTEPF---FSPDGRSIYFTSDRGGAPQIYRMPASGGAA-Q----RVTFTG--SYNTSPR 334 (427)
T ss_pred EEEECCCCC-cEECC-CCCCCCcCeE---EcCCCCEEEEEecCCCCcEEEEEECCCCce-E----EEecCC--CCcCceE
Confidence 665 4433 44554 4555556666 4899998886664 4667777654 3321 1 112222 2334678
Q ss_pred EeeecCCCCEEEEEECCC---eEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCCEE
Q 001416 271 LSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1081)
Q Consensus 271 fsp~~~~~~~Lvsgs~Dg---~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~ll 329 (1081)
|+| ++++|+..+.++ .|.+||+.+++.. .+. . ........|+|||+.|
T Consensus 335 ~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt------~-~~~~~~p~~spdg~~l 385 (427)
T PRK02889 335 ISP---DGKLLAYISRVGGAFKLYVQDLATGQVT-ALT------D-TTRDESPSFAPNGRYI 385 (427)
T ss_pred ECC---CCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc------C-CCCccCceECCCCCEE
Confidence 999 999998777654 6999999887643 321 1 1123467899999966
No 386
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=98.83 E-value=2.2e-11 Score=133.71 Aligned_cols=216 Identities=4% Similarity=-0.127 Sum_probs=134.7
Q ss_pred CCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeE
Q 001416 665 APQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV 739 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~ 739 (1081)
..+++|..+............|.+.+.-.+|.|++.+. ..+.++|+|||+. |+|.+.+......+.|.....+
T Consensus 28 ~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~~- 105 (258)
T cd05078 28 TEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKF-GSLDTYLKKNKNLINISWKLEV- 105 (258)
T ss_pred chhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCC-CcHHHHHhcCCCCCCHHHHHHH-
Confidence 34666666554444333444555666667899998877 4688999999998 9998776543334455544444
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhH--------hhhccceeeeeecccchhhhcccccCCcchhhh
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRA--------VAEHGELALIAVESSQTAAQDRIKLRPPMLQVV 810 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rw--------v~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1081)
+..+++|+.|||...+ |+.+|++|++++..- .+|++|||+.......... .
T Consensus 106 -------~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~------~------- 165 (258)
T cd05078 106 -------AKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEIL------L------- 165 (258)
T ss_pred -------HHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCCchhc------c-------
Confidence 5688899999999888 999999999996554 4688888875422111000 0
Q ss_pred hhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEE
Q 001416 811 RLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLI 890 (1081)
Q Consensus 811 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 890 (1081)
....|.|||+.... ...+.+.||||+|+++++++.|+.+.. ...++.... .....+
T Consensus 166 -~~~~y~aPE~~~~~----------~~~~~~~DiwslG~~l~~l~~g~~~~~-~~~~~~~~~--------~~~~~~---- 221 (258)
T cd05078 166 -ERIPWVPPECIENP----------QNLSLAADKWSFGTTLWEIFSGGDKPL-SALDSQKKL--------QFYEDR---- 221 (258)
T ss_pred -ccCCccCchhccCC----------CCCCchhhHHHHHHHHHHHHcCCCCCh-hhccHHHHH--------HHHHcc----
Confidence 01126778875321 112344799999999999988754321 111100000 000000
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
..+. ........+++..||..+|..||++..|.+.|
T Consensus 222 --------~~~~-----~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 222 --------HQLP-----APKWTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred --------ccCC-----CCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 0000 01123456899999999999999999987654
No 387
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=98.82 E-value=4.1e-11 Score=135.23 Aligned_cols=231 Identities=8% Similarity=-0.080 Sum_probs=141.1
Q ss_pred CCCccEEEEeecccccc---CCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQPV---GGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~---~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
++.+++|.++..+.... ..+..|.+.++-.+|.|++.+. ..+.++|+||++. ++|.+++.+. ..+.+...
T Consensus 26 ~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g-~~L~~~l~~~-~~~~~~~~ 103 (305)
T cd05609 26 RQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEG-GDCATLLKNI-GALPVDMA 103 (305)
T ss_pred CcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCC-CcHHHHHHHc-CCCCHHHH
Confidence 45588998876653222 2244566666777899999987 3467999999998 8998887552 22333322
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh-h-------cccccCCcc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA-Q-------DRIKLRPPM 806 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~-~-------~~~~~~~~~ 806 (1081)
..+ +.++..|+.|||...+ |+.++++|++++..+.+|++|||+.......... . .........
T Consensus 104 ~~~--------~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (305)
T cd05609 104 RMY--------FAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQ 175 (305)
T ss_pred HHH--------HHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccC
Confidence 222 4567789999999888 9999999999999999999999976431100000 0 000000000
Q ss_pred hhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCe
Q 001416 807 LQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGV 886 (1081)
Q Consensus 807 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 886 (1081)
. .-...|.|||.... ...+.+.|+||+|++++|+.+|..|+... ++++.... ...
T Consensus 176 ~---~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~vl~el~~g~~pf~~~--~~~~~~~~-------~~~-- 230 (305)
T cd05609 176 V---CGTPEYIAPEVILR-----------QGYGKPVDWWAMGIILYEFLVGCVPFFGD--TPEELFGQ-------VIS-- 230 (305)
T ss_pred C---ccCccccCchhccC-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHH-------HHh--
Confidence 0 00112567776421 11234579999999999999888777411 11110000 000
Q ss_pred EEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 887 LWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 887 ~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
-.+..+.....++....++++.|+..+|..||....+...|+.
T Consensus 231 ------------~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 231 ------------DDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred ------------cccCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence 0001111112344556799999999999999998766666654
No 388
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=98.82 E-value=3.7e-11 Score=132.19 Aligned_cols=221 Identities=7% Similarity=-0.044 Sum_probs=135.3
Q ss_pred CCCccEEEEeecccc-----ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 664 AAPQNFQLYSWETFQ-----PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-----l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
|..+++|.+...... -+..+..|.+.++=.+|.|++.+. ....++|+||++. ++|.+.+.... .+.+.
T Consensus 27 ~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~~l~~~~~~~~-~~~~~ 104 (263)
T cd06625 27 GRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPG-GSVKDQLKAYG-ALTET 104 (263)
T ss_pred CcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCC-CcHHHHHHHhC-CCCHH
Confidence 445778776533211 112244455566667899999887 5688999999998 88876654311 11111
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhc-ccccCCcchhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD-RIKLRPPMLQVVR 811 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~-~~~~~~~~~~~~~ 811 (1081)
....+ +..++.|+.|||...+ |+.++++|++++..-.+|++|||+............ ........
T Consensus 105 ~~~~~--------~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~----- 171 (263)
T cd06625 105 VTRKY--------TRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTP----- 171 (263)
T ss_pred HHHHH--------HHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCc-----
Confidence 11112 4467889999999988 999999999999999999999998753211100000 00011112
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEe
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
.|.|||+.... ..+.+.||||+|++++++++|..|+...... +... . ...
T Consensus 172 ---~y~aPE~~~~~-----------~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~------~--~~~------- 221 (263)
T cd06625 172 ---YWMSPEVISGE-----------GYGRKADVWSVGCTVVEMLTEKPPWAEFEAM-AAIF------K--IAT------- 221 (263)
T ss_pred ---cccCcceeccC-----------CCCchhhhHHHHHHHHHHHhCCCCccccchH-HHHH------H--Hhc-------
Confidence 27788886421 1334579999999999999988776421110 0000 0 000
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
.+. .+.+.-.+.....++++.|+..+|..||+...+..
T Consensus 222 -------~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 259 (263)
T cd06625 222 -------QPT-NPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLR 259 (263)
T ss_pred -------cCC-CCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhh
Confidence 000 00111134445678999999999999999887643
No 389
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=98.82 E-value=1.3e-10 Score=128.68 Aligned_cols=202 Identities=13% Similarity=0.028 Sum_probs=124.0
Q ss_pred CCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccc-cc--------------eeeEeeeeeEeccC
Q 001416 685 PQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TG--------------AVWHRRQLFVVTPT 743 (1081)
Q Consensus 685 ~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~--------------~~w~~~~~~~~t~~ 743 (1081)
.|++.+.-. +|.|++.+. ....++++|||+. |+|.+.+.+.. .. +.+.....+
T Consensus 44 ~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 117 (270)
T cd05047 44 GELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH-GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF----- 117 (270)
T ss_pred HHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC-CcHHHHHHhccccccccccccccCCcCCCCHHHHHHH-----
Confidence 344444444 688888776 3457899999998 89887654311 11 111111122
Q ss_pred ceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCC
Q 001416 744 TIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVP 822 (1081)
Q Consensus 744 ~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 822 (1081)
+.++..|+.|||...+ |+.+|++|++++.+..+|++|||+..-... .... .....+. .|.|||..
T Consensus 118 ---~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~--~~~~-~~~~~~~--------~y~apE~~ 183 (270)
T cd05047 118 ---AADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--YVKK-TMGRLPV--------RWMAIESL 183 (270)
T ss_pred ---HHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCccccch--hhhc-cCCCCcc--------ccCChHHH
Confidence 4567789999999888 999999999999999999999998631110 0000 0000111 16677764
Q ss_pred CCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCC
Q 001416 823 PFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSL 901 (1081)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l 901 (1081)
... ..+.+.||||||++++|+++ |..|+.....+ . .+.. ...+ +.+
T Consensus 184 ~~~-----------~~~~~~Di~slG~il~el~~~g~~pf~~~~~~--~------~~~~-~~~~-------------~~~ 230 (270)
T cd05047 184 NYS-----------VYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA--E------LYEK-LPQG-------------YRL 230 (270)
T ss_pred ccC-----------CCCchhhHHHHHHHHHHHHcCCCCCccccCHH--H------HHHH-HhCC-------------CCC
Confidence 211 12334799999999999985 66666321111 0 0000 0000 000
Q ss_pred CCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 902 SHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..+ ..+.....+++..||..+|..||++..+...|+.+
T Consensus 231 ~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~ 268 (270)
T cd05047 231 EKP---LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 268 (270)
T ss_pred CCC---CcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence 000 12334566999999999999999999999988765
No 390
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=98.82 E-value=4.1e-11 Score=133.21 Aligned_cols=218 Identities=10% Similarity=-0.027 Sum_probs=136.6
Q ss_pred CCCCccEEEEeecccccc---CCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccc-cccceeeE
Q 001416 663 EAAPQNFQLYSWETFQPV---GGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIP-YATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~---~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~-~~~~~~w~ 733 (1081)
.|..+++|.++.+..... +....|...++-..|.|++.+. ....++|+|||+. |+|.+.+.. ...++++.
T Consensus 17 ~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g-~~L~~~~~~~~~~~~~~~ 95 (277)
T cd05607 17 TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNG-GDLKYHIYNVGERGLEME 95 (277)
T ss_pred CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCC-CCHHHHHHhccccCCCHH
Confidence 356688888875443221 1233466667777899999887 3568999999998 888765432 22334444
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..+..|+.|||...+ |+.++++|++++....+|++|||+...-........ .....
T Consensus 96 ~~~~~--------~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~---~~~~~------ 158 (277)
T cd05607 96 RVIHY--------SAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQ---RAGTN------ 158 (277)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeec---cCCCC------
Confidence 33333 4578889999999888 999999999999999999999998754221110000 00011
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCC--CCCCCCCCCcEEeeeecCeEEEE
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFP--TEQKRPIGPLVVVGVKDGVLWLI 890 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~ 890 (1081)
.|.|||..... ..+.+.||||+|++++++++|..|+....-. .++.... .....
T Consensus 159 --~y~aPE~~~~~-----------~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~------~~~~~----- 214 (277)
T cd05607 159 --GYMAPEILKEE-----------PYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRR------TLEDE----- 214 (277)
T ss_pred --CccCHHHHccC-----------CCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHH------hhccc-----
Confidence 16778775321 1234579999999999999988887421110 0000000 00000
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHH
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDD 934 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 934 (1081)
+++... ....+..++++.|+..+|..||+...
T Consensus 215 --------~~~~~~----~~~~~~~~li~~~L~~~P~~R~~~~~ 246 (277)
T cd05607 215 --------VKFEHQ----NFTEESKDICRLFLAKKPEDRLGSRE 246 (277)
T ss_pred --------cccccc----cCCHHHHHHHHHHhccCHhhCCCCcc
Confidence 000000 12334579999999999999998743
No 391
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=98.82 E-value=1.5e-10 Score=130.52 Aligned_cols=202 Identities=12% Similarity=0.017 Sum_probs=123.9
Q ss_pred CCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccc-c--------------ceeeEeeeeeEeccC
Q 001416 685 PQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-T--------------GAVWHRRQLFVVTPT 743 (1081)
Q Consensus 685 ~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~--------------~~~w~~~~~~~~t~~ 743 (1081)
.|++.+.-. +|.|++.+. ....++|+|||+. |+|.+.+.... . .+.+.....+
T Consensus 56 ~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 129 (303)
T cd05088 56 GELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH-GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF----- 129 (303)
T ss_pred HHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCC-CcHHHHHHhcccccccccccccccccCcCCHHHHHHH-----
Confidence 344444444 688888876 3568999999998 88877654311 0 1111111222
Q ss_pred ceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCC
Q 001416 744 TIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVP 822 (1081)
Q Consensus 744 ~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 822 (1081)
+..+++|+.|||.-.+ |+.++++|++++....+|++|||+....... .... . ...+.. +.|||..
T Consensus 130 ---~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~-~~~~-~-~~~~~~--------y~aPE~~ 195 (303)
T cd05088 130 ---AADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY-VKKT-M-GRLPVR--------WMAIESL 195 (303)
T ss_pred ---HHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCccccCcccchh-hhcc-c-CCCccc--------ccCHHHH
Confidence 4567889999999888 9999999999999999999999986421110 0000 0 000111 5677754
Q ss_pred CCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCC
Q 001416 823 PFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSL 901 (1081)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l 901 (1081)
.. ...+.+.||||+|++++|+++ |+.|+...... +.... .... +.+
T Consensus 196 ~~-----------~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~-------~~~~-------------~~~ 242 (303)
T cd05088 196 NY-----------SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA--ELYEK-------LPQG-------------YRL 242 (303)
T ss_pred hc-----------cCCcccccchhhhhHHHHHHhcCCCCcccCChH--HHHHH-------HhcC-------------CcC
Confidence 21 112345799999999999986 66665311110 00000 0000 000
Q ss_pred CCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 902 SHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.. ...+.....+++..||..+|..||+...+...|+.+
T Consensus 243 ~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~ 280 (303)
T cd05088 243 EK---PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 280 (303)
T ss_pred CC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 00 012344567899999999999999999998877654
No 392
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=98.82 E-value=8.5e-11 Score=129.25 Aligned_cols=204 Identities=10% Similarity=0.014 Sum_probs=128.3
Q ss_pred CCCcceeeecccCceEEEe----eeeEEEEEecCccccccccccccc-ccceeeEeeeeeEeccCceEEEeeeCCccccc
Q 001416 684 LPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQLFVVTPTTIECVFVDAGVAAID 758 (1081)
Q Consensus 684 ~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh 758 (1081)
..|++.++-.+|.|++.+. ....+++++|++. |+|.+.+... ...+.|.....+ ...+..|+.|||
T Consensus 49 ~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~--------~~~l~~al~~lH 119 (260)
T cd05069 49 LQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGK-GSLLDFLKEGDGKYLKLPQLVDM--------AAQIADGMAYIE 119 (260)
T ss_pred HHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCC-CCHHHHHhhCCCCCCCHHHHHHH--------HHHHHHHHHHHH
Confidence 3455555566788888776 3456899999998 8888766432 112333332222 446778999999
Q ss_pred hhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCC
Q 001416 759 VETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDD 837 (1081)
Q Consensus 759 ~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 837 (1081)
...+ |+.++++|++++....+|++|||+.......... .......++. +.|||... +..
T Consensus 120 ~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~--------y~~Pe~~~-----------~~~ 179 (260)
T cd05069 120 RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYT-ARQGAKFPIK--------WTAPEAAL-----------YGR 179 (260)
T ss_pred hCCEeecccCcceEEEcCCCeEEECCCccceEccCCccc-ccCCCccchh--------hCCHHHhc-----------cCC
Confidence 9888 9999999999999999999999988653211110 0000111122 56677542 112
Q ss_pred CCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceeccccccc
Q 001416 838 SMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGD 916 (1081)
Q Consensus 838 ~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~ 916 (1081)
.+.+.||||+|++++++++ |..|+.... +.+... ....+ ...+.. -..+....+
T Consensus 180 ~~~~~Di~slG~~l~el~t~g~~p~~~~~-~~~~~~--------~~~~~-----------~~~~~~-----~~~~~~~~~ 234 (260)
T cd05069 180 FTIKSDVWSFGILLTELVTKGRVPYPGMV-NREVLE--------QVERG-----------YRMPCP-----QGCPESLHE 234 (260)
T ss_pred cChHHHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHH--------HHHcC-----------CCCCCC-----cccCHHHHH
Confidence 3345799999999999987 444543111 000000 00000 000100 123456779
Q ss_pred HHHHHhhhcccCcccHHHHHHHHHh
Q 001416 917 SVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 917 ~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
++++|+..+|..||..+.|.++|+.
T Consensus 235 li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 235 LMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred HHHHHccCCcccCcCHHHHHHHHhc
Confidence 9999999999999999999999875
No 393
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=98.81 E-value=7.3e-11 Score=129.16 Aligned_cols=218 Identities=8% Similarity=-0.017 Sum_probs=136.4
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEee
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~ 735 (1081)
+..+++|.++..... ....+..|++.++-.+|.|++.+. .+..++|+||++. ++|.+.+.... ..+.+...
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~ 103 (256)
T cd08220 25 QKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPG-GTLAEYIQKRCNSLLDEDTI 103 (256)
T ss_pred CcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCC-CCHHHHHHHhcccCCCHHHH
Confidence 444788888765432 222344556666666888888776 4678999999998 89887765311 11222211
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhh-hhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQ-SRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd-~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
... +..+.+|+.|||...+ ||.++.+|++++ ..+++|++|||+............ ......
T Consensus 104 ~~~--------~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~---~~~~~~------ 166 (256)
T cd08220 104 LHF--------FVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYT---VVGTPC------ 166 (256)
T ss_pred HHH--------HHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccc---cccCCc------
Confidence 111 3467889999999888 999999999997 457889999998865322111100 011112
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
|.|||.... ...+.+.||||+|++++++.+|..++.....+ +.. .....+
T Consensus 167 --y~aPE~~~~-----------~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~-~~~--------~~~~~~-------- 216 (256)
T cd08220 167 --YISPELCEG-----------KPYNQKSDIWALGCVLYELASLKRAFEAANLP-ALV--------LKIMSG-------- 216 (256)
T ss_pred --ccCchhccC-----------CCCCcccchHHHHHHHHHHHhCCCCcccCchH-HHH--------HHHHhc--------
Confidence 778887532 11234579999999999999888776432221 000 000000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
...+ +...+.....+++..||..+|..||++..+..
T Consensus 217 ---~~~~-----~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 217 ---TFAP-----ISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred ---CCCC-----CCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 0000 01123445678999999999999999998753
No 394
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=98.81 E-value=2.9e-11 Score=136.99 Aligned_cols=180 Identities=9% Similarity=-0.061 Sum_probs=116.3
Q ss_pred CCCCccEEEEeec--cccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEe
Q 001416 663 EAAPQNFQLYSWE--TFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~--~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
.|..+++|.+..+ +..-..++..|++.++-.+|.|++.+. ....+++++||+. |+|.+.+.+. ...+....
T Consensus 24 ~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~-~~l~~~l~~~~~~~~~~~~ 102 (314)
T cd08216 24 TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAY-GSCEDLLKTHFPEGLPELA 102 (314)
T ss_pred CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCC-CCHHHHHHHhcccCCCHHH
Confidence 5667899988755 223334566777777778899998876 4578999999998 8888776542 11222211
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.++++|++++....+|++|||+...-... ....... .....-....
T Consensus 103 ~~~~--------~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~-~~~~~~~--~~~~~~~~~~ 171 (314)
T cd08216 103 IAFI--------LKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKH-GKRQRVV--HDFPKSSVKN 171 (314)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccc-ccccccc--cccccccccc
Confidence 1112 4578899999999999 9999999999999999999999966421100 0000000 0000000111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAV 863 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~ 863 (1081)
..|.|||+..... ..-+.+.|+||||++++|++.|..||..
T Consensus 172 ~~y~aPE~~~~~~---------~~~~~~~Diws~G~il~el~~g~~pf~~ 212 (314)
T cd08216 172 LPWLSPEVLQQNL---------QGYNEKSDIYSVGITACELANGHVPFKD 212 (314)
T ss_pred ccccCHHHhcCCC---------CCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence 2267888753210 0122357999999999999998888863
No 395
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=98.81 E-value=1.1e-10 Score=131.07 Aligned_cols=201 Identities=10% Similarity=-0.004 Sum_probs=123.1
Q ss_pred Ccceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccc-cc--------------eeeEeeeeeEeccCc
Q 001416 686 QPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TG--------------AVWHRRQLFVVTPTT 744 (1081)
Q Consensus 686 ~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~--------------~~w~~~~~~~~t~~~ 744 (1081)
|++.+.=. .|.|++.+. ....+++++|++. |+|.+.+.... .. +.+.....+
T Consensus 52 E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i------ 124 (297)
T cd05089 52 ELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPY-GNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQF------ 124 (297)
T ss_pred HHHHHHhhcCCCchhheEEEEccCCcceEEEEecCC-CcHHHHHHhccccccccccccccCccCCCCHHHHHHH------
Confidence 44433333 578888776 3457899999998 89887664311 00 111111111
Q ss_pred eEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCC
Q 001416 745 IECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPP 823 (1081)
Q Consensus 745 i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 823 (1081)
+..++.|+.|||...+ |+.+|++|++++..+.+|++|||+.......... .....+.. |.|||...
T Consensus 125 --~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~--------y~aPE~~~ 191 (297)
T cd05089 125 --ASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKK---TMGRLPVR--------WMAIESLN 191 (297)
T ss_pred --HHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEECCcCCCccccceecc---CCCCcCcc--------ccCchhhc
Confidence 3457789999999888 9999999999999999999999986421110000 00011112 67777642
Q ss_pred CcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCC
Q 001416 824 FLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLS 902 (1081)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~ 902 (1081)
. ...+.+.||||+|++++|+++ |.-|+...... +. +.. ...+ +...
T Consensus 192 ~-----------~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~--~~------~~~-~~~~-------------~~~~ 238 (297)
T cd05089 192 Y-----------SVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCA--EL------YEK-LPQG-------------YRME 238 (297)
T ss_pred c-----------CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HH------HHH-HhcC-------------CCCC
Confidence 1 112334799999999999986 66665321111 00 000 0000 0000
Q ss_pred CcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 903 HPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
+...+.....+++..||..+|..||++..|.+.|+.+
T Consensus 239 ---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 275 (297)
T cd05089 239 ---KPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRM 275 (297)
T ss_pred ---CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 0112445567999999999999999999998877655
No 396
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.81 E-value=1.9e-10 Score=117.84 Aligned_cols=222 Identities=11% Similarity=0.037 Sum_probs=140.2
Q ss_pred CCCCCccEEEEeec--cccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeE
Q 001416 662 AEAAPQNFQLYSWE--TFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWH 733 (1081)
Q Consensus 662 ~~~~~~~i~~~~~~--~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~ 733 (1081)
..||-...|...-+ |-++.|..-.|.-.+|=-.|.|+++.+ +||..+|++|-|. |||-.+|-.. ..-.|-.
T Consensus 211 wqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~-gslynvlhe~t~vvvd~s 289 (448)
T KOG0195|consen 211 WQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPF-GSLYNVLHEQTSVVVDHS 289 (448)
T ss_pred ccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccc-hHHHHHHhcCccEEEecc
Confidence 34444444433322 344556666677778888999999988 8999999999998 9999887642 2223333
Q ss_pred eeeeeEeccCceEEEeeeCCccccch-hhh--hhhhhhhhHHhhhhHhhhcc--ceeeeee-cccchhhhcccccCCcch
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDV-ETM--KMKEEMKLKEVQSRAVAEHG--ELALIAV-ESSQTAAQDRIKLRPPML 807 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~-s~~--hg~l~s~nc~vd~rwv~k~~--d~gl~~~-~~~~~~~~~~~~~~~~~~ 807 (1081)
.-..| +.|+.+||.|||. +++ .-.|.|...+||.--..+|+ |-- ++| +.. ..|+|
T Consensus 290 qav~f--------aldiargmaflhslep~ipr~~lns~hvmidedltarismad~k-fsfqe~g--------r~y~p-- 350 (448)
T KOG0195|consen 290 QAVRF--------ALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTK-FSFQEVG--------RAYSP-- 350 (448)
T ss_pred hHHHH--------HHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccce-eeeeccc--------cccCc--
Confidence 44556 7799999999998 444 44677778888887776664 211 111 111 01111
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
| |.+||-+. ..|+++. ....|+|||+|.+.|+.+|..||. .+++-+.-- .+-+-|++-
T Consensus 351 -----a--wmspealq--rkped~n------~raadmwsfaillwel~trevpfa--dlspmecgm--kialeglrv--- 408 (448)
T KOG0195|consen 351 -----A--WMSPEALQ--RKPEDLN------IRAADMWSFAILLWELNTREVPFA--DLSPMECGM--KIALEGLRV--- 408 (448)
T ss_pred -----c--cCCHHHHh--cCchhcc------hhhhhHHHHHHHHHHhhccccccc--cCCchhhhh--hhhhccccc---
Confidence 1 77777753 2344333 234689999999999999999986 454211100 000011100
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
.+++-.-+-.| .++.-|-.|+|-.||.|+.|.-.|++|
T Consensus 409 ------------~ippgis~hm~-----klm~icmnedpgkrpkfdmivpilekm 446 (448)
T KOG0195|consen 409 ------------HIPPGISRHMN-----KLMNICMNEDPGKRPKFDMIVPILEKM 446 (448)
T ss_pred ------------cCCCCccHHHH-----HHHHHHhcCCCCcCCCcceehhhHHHh
Confidence 00000111133 789999999999999999999999987
No 397
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=98.81 E-value=1e-10 Score=128.16 Aligned_cols=218 Identities=10% Similarity=-0.037 Sum_probs=133.7
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~~ 736 (1081)
|..+++|.++.... ....++..|.+.++-.+|.|++.+. ....+++++||+. |+|.+.+... ...+......
T Consensus 25 ~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~ 103 (255)
T cd08219 25 DQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDG-GDLMQKIKLQRGKLFPEDTIL 103 (255)
T ss_pred CceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCC-CcHHHHHHhccCCCCCHHHHH
Confidence 44578888754321 1122344455556677899998877 4578999999998 8877544321 1111111111
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..++.|+.|||...+ ||.++.+|++++..-.++++|||+...-..... ......... .
T Consensus 104 ~~--------~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~--------~ 165 (255)
T cd08219 104 QW--------FVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA--YACTYVGTP--------Y 165 (255)
T ss_pred HH--------HHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccccc--ccccccCCc--------c
Confidence 12 4567889999999888 999999999999999999999998754221110 000011111 2
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
|.|||+.... ..+.+.|+||+|++++++..|..|+...... .. ...+..+.
T Consensus 166 ~~aPE~~~~~-----------~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~--~~-------~~~~~~~~--------- 216 (255)
T cd08219 166 YVPPEIWENM-----------PYNNKSDIWSLGCILYELCTLKHPFQANSWK--NL-------ILKVCQGS--------- 216 (255)
T ss_pred ccCHHHHccC-----------CcCchhhhhhhchhheehhhccCCCCCCCHH--HH-------HHHHhcCC---------
Confidence 7788875321 1233479999999999999888877422110 00 00000000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
. .++. -.+.....+++++||..+|..||.+..|.
T Consensus 217 ~--~~~~-----~~~~~~~~~li~~~l~~~P~~Rp~~~~il 250 (255)
T cd08219 217 Y--KPLP-----SHYSYELRSLIKQMFKRNPRSRPSATTIL 250 (255)
T ss_pred C--CCCC-----cccCHHHHHHHHHHHhCCcccCCCHHHHh
Confidence 0 0000 11233456899999999999999998874
No 398
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=98.81 E-value=6.4e-11 Score=132.83 Aligned_cols=218 Identities=9% Similarity=-0.023 Sum_probs=136.8
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
+..+++|.++-+.......+..|++.++-.+|.|++.+. ....++|+||++. ++|.+.+.+. .+.+.....+
T Consensus 44 ~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~--~l~~~~~~~i 120 (293)
T cd06647 44 GQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAG-GSLTDVVTET--CMDEGQIAAV 120 (293)
T ss_pred CCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCC-CcHHHHHhhc--CCCHHHHHHH
Confidence 344677776544333223345566667777899998877 4578999999998 8888765431 2233222222
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+.++..|+.|||...+ |+.++.+|++++.+..+|++|||+......... ....... ...|.
T Consensus 121 --------~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~--------~~~y~ 182 (293)
T cd06647 121 --------CRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVG--------TPYWM 182 (293)
T ss_pred --------HHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccc--ccccccC--------Chhhc
Confidence 4567889999999999 999999999999999999999998654221111 0000111 12277
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
|||+.... ..+.+.||||||+++++++.|..||...... ..+...+....
T Consensus 183 ~PE~~~~~-----------~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~-------~~~~~~~~~~~------------ 232 (293)
T cd06647 183 APEVVTRK-----------AYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-------RALYLIATNGT------------ 232 (293)
T ss_pred CchhhccC-----------CCCchhhHHHHHHHHHHHHhCCCCCCCCChh-------hheeehhcCCC------------
Confidence 88875321 1234579999999999999888777422110 00000000000
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+.. .-.......++++.||..+|..||.++.|.
T Consensus 233 -~~~~~---~~~~~~~l~~li~~~l~~~p~~Rp~~~~il 267 (293)
T cd06647 233 -PELQN---PEKLSAIFRDFLNRCLEMDVEKRGSAKELL 267 (293)
T ss_pred -CCCCC---ccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 00000 001233566899999999999999999875
No 399
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=5.7e-06 Score=89.34 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=169.7
Q ss_pred CCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEec---CcEEE--EEecCCCcccccccccCCCCee
Q 001416 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV---NKAIF--LDLVTMRGRDIPKQELDNKSLV 168 (1081)
Q Consensus 94 Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~---d~~i~--wd~~t~~~~~~~~~~~~~~~I~ 168 (1081)
++-|.+|++.+......... .... .+..+-++|+|+++.+.++... +++.- ||-+.++...+........+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~-~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAE-LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccc-cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 56789999885543221111 1222 4556889999999877777665 34443 5666566555555555566668
Q ss_pred EEEEeeccccCCCCEEEEEEC-CCeEEEEEcCC-CeE---EEEEecccccc----------eEEEEEeeeCCCCCEEEEE
Q 001416 169 CMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS-WKL---VRRYTGGHKGS----------ISCLMTFMASSGEALLVSG 233 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs~-Dg~I~lwd~~~-~~~---~~~~~~~h~~~----------V~~l~w~~~s~d~~~l~sg 233 (1081)
.+++ ++++++++++.. .|.|.++-++. |.. +..+ .|.+. +.+.. +.|++++|++.
T Consensus 93 yvsv-----d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~--~h~g~~p~~rQ~~~h~H~a~---~tP~~~~l~v~ 162 (346)
T COG2706 93 YVSV-----DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV--KHTGSGPHERQESPHVHSAN---FTPDGRYLVVP 162 (346)
T ss_pred EEEE-----CCCCCEEEEEEccCceEEEEEcccCCccccceeee--ecCCCCCCccccCCccceee---eCCCCCEEEEe
Confidence 8999 789999998884 58899999864 432 2222 34444 55555 69999999988
Q ss_pred eC-CCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEEC-CCeEEEEECCCC-ceeeEecCCCcc
Q 001416 234 GS-DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSF-KELRRIKPVPKL 310 (1081)
Q Consensus 234 s~-Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~-Dg~V~iWDl~t~-~~~~~~~~~~~~ 310 (1081)
.. --.|.+|++..+.....- ...+ .-..+-..+.|+| ++++....++ +++|.+|.+... ..+..++.+..+
T Consensus 163 DLG~Dri~~y~~~dg~L~~~~--~~~v-~~G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPAD--PAEV-KPGAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred ecCCceEEEEEcccCcccccc--cccc-CCCCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 64 236889999976643321 1112 2345678999999 8888776664 999999999873 333333333333
Q ss_pred cc---CCCCeEEEeecCCCCEEEEECCc--eE--EEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCe
Q 001416 311 AC---HSVASWCHPRAPNLDILTCVKDS--HI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH 383 (1081)
Q Consensus 311 ~~---h~~~v~~v~~spd~~lls~s~D~--~I--Wdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~ 383 (1081)
.. -..+...+..+|||++|-+|..+ .| +.+......... +.....++. .-....++|++..
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~-----------~~~~~teg~-~PR~F~i~~~g~~ 304 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL-----------VGITPTEGQ-FPRDFNINPSGRF 304 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE-----------EEEeccCCc-CCccceeCCCCCE
Confidence 21 22356688899999999777654 34 444432111000 011111121 2345678888677
Q ss_pred EEEEEECCCeEEEEeC
Q 001416 384 LVATGTNVGVIISEFD 399 (1081)
Q Consensus 384 llatgs~dG~Il~iwd 399 (1081)
|+|++-++..+ .++.
T Consensus 305 Liaa~q~sd~i-~vf~ 319 (346)
T COG2706 305 LIAANQKSDNI-TVFE 319 (346)
T ss_pred EEEEccCCCcE-EEEE
Confidence 76666666664 5665
No 400
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=98.81 E-value=3.2e-11 Score=132.27 Aligned_cols=198 Identities=7% Similarity=-0.038 Sum_probs=127.1
Q ss_pred CCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEeccCceEEEeeeCCccccc
Q 001416 683 LLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAID 758 (1081)
Q Consensus 683 ~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh 758 (1081)
...|+..++=.+|.|++.+. .+..++|+|||+. |+|.+.+......+.+.....+ +..+..|+.|||
T Consensus 48 ~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~--------~~~i~~~l~~LH 118 (259)
T cd05037 48 FFETASLMSQLSHKHLVKLYGVCVRDENIMVEEYVKF-GPLDVFLHREKNNVSLHWKLDV--------AKQLASALHYLE 118 (259)
T ss_pred HHHHHHHHHcCCCcchhheeeEEecCCcEEEEEcCCC-CcHHHHHHhhccCCCHHHHHHH--------HHHHHHHHHHHh
Confidence 34455556667899998877 2578999999999 9998776543223344333333 568889999999
Q ss_pred hhhh-hhhhhhhhHHhhhhH-------hhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCcc
Q 001416 759 VETM-KMKEEMKLKEVQSRA-------VAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQ 830 (1081)
Q Consensus 759 ~s~~-hg~l~s~nc~vd~rw-------v~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 830 (1081)
...+ |+.+|++|++++.+. .+|++|||+...-...... ..... |.|||......
T Consensus 119 ~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~------~~~~~--------y~aPE~~~~~~---- 180 (259)
T cd05037 119 DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREER------VERIP--------WIAPECIRNGQ---- 180 (259)
T ss_pred hCCeecccCccceEEEecCccccCCceeEEeCCCCccccccccccc------ccCCC--------ccChhhhcCCC----
Confidence 9888 999999999999888 8999999987542211000 01111 67777753211
Q ss_pred ccccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCccccee
Q 001416 831 TKVEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCR 909 (1081)
Q Consensus 831 ~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 909 (1081)
...+.+.||||+|+++++++.|+ .|+. ..++.+.. ..+. ... ..+. .
T Consensus 181 -----~~~~~~~Di~slG~~~~~l~~~~~~p~~--~~~~~~~~---~~~~---~~~------------~~~~-------~ 228 (259)
T cd05037 181 -----ASLTIAADKWSFGTTLLEICSNGEEPLS--TLSSSEKE---RFYQ---DQH------------RLPM-------P 228 (259)
T ss_pred -----CCcchhhHHHHHHHHHHHHHhCCCCCcc--cCCchhHH---HHHh---cCC------------CCCC-------C
Confidence 12344579999999999988753 2332 11110000 0000 000 0000 0
Q ss_pred cccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 910 CLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
......++++.||..+|..||.+..|.+.|
T Consensus 229 ~~~~~~~li~~~l~~~p~~Rpt~~~il~~l 258 (259)
T cd05037 229 DCAELANLINQCWTYDPTKRPSFRAILRDL 258 (259)
T ss_pred CchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 114556899999999999999999987765
No 401
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=98.80 E-value=4.5e-11 Score=133.09 Aligned_cols=218 Identities=9% Similarity=-0.063 Sum_probs=133.5
Q ss_pred CCCCccEEEEeecccccc---CCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc---cccee
Q 001416 663 EAAPQNFQLYSWETFQPV---GGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY---ATGAV 731 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~---~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~---~~~~~ 731 (1081)
.|+.+++|.+..+...-. ..+..|.+.++-..|.|++.+. ..+.++|+|||+. |+|.+.+.+. ...+.
T Consensus 17 ~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-g~L~~~~~~~~~~~~~l~ 95 (280)
T cd05608 17 TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNG-GDLRYHIYNVDEENPGFP 95 (280)
T ss_pred CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCC-CCHHHHHHhccccCCCCC
Confidence 355688988876543221 1233466666777888988776 3568999999999 8887554221 11222
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVV 810 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1081)
+.....+ +..+..|+.|||...+ |+.+++.|++++....+|++|||+...-....... .......
T Consensus 96 ~~~~~~~--------~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~--~~~~g~~---- 161 (280)
T cd05608 96 EPRACFY--------TAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKT--KGYAGTP---- 161 (280)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccc--cccCCCc----
Confidence 3222223 4568889999999888 99999999999999999999999865311110000 0001111
Q ss_pred hhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEE
Q 001416 811 RLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLI 890 (1081)
Q Consensus 811 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 890 (1081)
.|.|||.... ...+.+.||||+|++++++++|..|+.......+.. . ....
T Consensus 162 ----~y~aPE~~~~-----------~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~----~-----~~~~----- 212 (280)
T cd05608 162 ----GFMAPELLQG-----------EEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENK----E-----LKQR----- 212 (280)
T ss_pred ----CccCHHHhcC-----------CCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHH----H-----HHHh-----
Confidence 2677887532 112345799999999999999888875221110000 0 0000
Q ss_pred eccccccccCCCCcccceecccccccHHHHHhhhcccCcccH
Q 001416 891 DRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHH 932 (1081)
Q Consensus 891 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 932 (1081)
+...++ .+.........+++..|+..+|..||.+
T Consensus 213 -----~~~~~~---~~~~~~~~~~~~li~~~l~~~P~~R~~~ 246 (280)
T cd05608 213 -----ILNDSV---TYPDKFSPASKSFCEALLAKDPEKRLGF 246 (280)
T ss_pred -----hcccCC---CCcccCCHHHHHHHHHHhcCCHHHhcCC
Confidence 000000 0111234456789999999999999965
No 402
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.4e-06 Score=103.27 Aligned_cols=212 Identities=11% Similarity=0.015 Sum_probs=130.8
Q ss_pred EEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC---CCeEEEEEcCCCeEEEEEecccccceEEEEE
Q 001416 144 AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMISWKLVRRYTGGHKGSISCLMT 220 (1081)
Q Consensus 144 ~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~---Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w 220 (1081)
+.++|..... ......+...+.+.+| +|||+.|+..+. +..|.+||+.+++... +. .+.+.+.+..
T Consensus 184 l~~~d~dg~~---~~~lt~~~~~v~~p~w-----SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~~~- 252 (435)
T PRK05137 184 LAIMDQDGAN---VRYLTDGSSLVLTPRF-----SPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFAPR- 252 (435)
T ss_pred EEEECCCCCC---cEEEecCCCCeEeeEE-----CCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccCcE-
Confidence 3356765432 2334456778999999 789999888764 4689999998876543 33 4566667777
Q ss_pred eeeCCCCCEEE-EEeCCCc--EEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEEC-C--CeEEEEE
Q 001416 221 FMASSGEALLV-SGGSDGL--LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-D--KTLAIWD 294 (1081)
Q Consensus 221 ~~~s~d~~~l~-sgs~Dg~--V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~-D--g~V~iWD 294 (1081)
++|+|+.|+ +.+.++. |.+||+.++... .+..+........|+| ++..|+..+. + ..|.+||
T Consensus 253 --~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~Lt~~~~~~~~~~~sp---DG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 253 --FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-------RLTDSPAIDTSPSYSP---DGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred --ECCCCCEEEEEEecCCCceEEEEECCCCceE-------EccCCCCccCceeEcC---CCCEEEEEECCCCCCeEEEEE
Confidence 489998765 5556665 677788776532 2344555567789999 8888887764 3 3688889
Q ss_pred CCCCceeeEecCCCccccCCCCeEEEeecCCCCEEE-EECC---ceEEEeccCCcccccccccccCCCCCCeEEccCCCc
Q 001416 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILT-CVKD---SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKL 370 (1081)
Q Consensus 295 l~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~lls-~s~D---~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (1081)
+.+++. +.+ ..+...+....|+|+|+.|+ .+.+ .+||.++.... ....+. ...
T Consensus 321 ~~g~~~-~~l------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~--------------~~~~lt-~~~- 377 (435)
T PRK05137 321 ADGSNP-RRI------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS--------------GERILT-SGF- 377 (435)
T ss_pred CCCCCe-EEe------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC--------------ceEecc-CCC-
Confidence 876654 333 22233455678999999764 3332 24443332110 001111 112
Q ss_pred cEEEEEEeCCCCeEEEEEECCCe----EEEEeCCC
Q 001416 371 RVYCMVAHSLQPHLVATGTNVGV----IISEFDPR 401 (1081)
Q Consensus 371 ~V~~l~~sp~~~~llatgs~dG~----Il~iwd~~ 401 (1081)
.+....|+|++..+++++...+. .|.+.|..
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 35668999997766665554432 23555543
No 403
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=98.80 E-value=1e-10 Score=128.54 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=136.8
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEeeeeeEe
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQLFVV 740 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~~~~~ 740 (1081)
+++|.+.-.... ...+..|++.++-.+|.|++.+. ....++|++|++. ++|.+.+.... ..+.|.....+
T Consensus 33 ~~vK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~i~~~~~~~~~~~~~~~~-- 108 (261)
T cd05034 33 VAVKTLKPGTMS-PEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSK-GSLLDFLKSGEGKKLRLPQLVDM-- 108 (261)
T ss_pred EEEEEecCCccC-HHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCC-CCHHHHHhccccCCCCHHHHHHH--
Confidence 677776643322 12244566666677899999987 2568999999998 88876654321 22333322233
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCC
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAA 819 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 819 (1081)
...+..|+.|||...+ ||.++++|++++..-.+|++|||+...-........ .....+.. +.||
T Consensus 109 ------~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~-~~~~~~~~--------y~~P 173 (261)
T cd05034 109 ------AAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAR-EGAKFPIK--------WTAP 173 (261)
T ss_pred ------HHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhhhhh-hccCCCcc--------ccCH
Confidence 4567789999999988 999999999999999999999998754221110000 00011111 5666
Q ss_pred CCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 820 SVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
|... +...+.+.|+||+|++++++++ |..|+. ...... ... ....+
T Consensus 174 E~~~-----------~~~~~~~~Di~slG~il~~l~t~g~~p~~--~~~~~~-----~~~--~~~~~------------- 220 (261)
T cd05034 174 EAAN-----------YGRFTIKSDVWSFGILLTEIVTYGRVPYP--GMTNRE-----VLE--QVERG------------- 220 (261)
T ss_pred HHhc-----------cCCcCchhHHHHHHHHHHHHHhCCCCCCC--CCCHHH-----HHH--HHHcC-------------
Confidence 6542 1123345799999999999887 555542 111000 000 00000
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+.+. ....++....+++.+|+..+|..||+++.+..+|+.
T Consensus 221 ~~~~---~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 221 YRMP---RPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred CCCC---CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 0000 011234556789999999999999999999999875
No 404
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=98.80 E-value=8.9e-11 Score=134.46 Aligned_cols=173 Identities=10% Similarity=-0.045 Sum_probs=113.2
Q ss_pred CCCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe----e------eeEEEEEecCcccccccccccccccce
Q 001416 663 EAAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA----Y------QHYIVISSLCPQYRYLGDVAIPYATGA 730 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~----~------~~~~~v~~y~~~~gsl~d~~~~~~~~~ 730 (1081)
.|..++||.+..... .-..++..|++.++-.+|.|++.+. . .+.++|+|||. ++|.+.+.+. ..+
T Consensus 24 ~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~--~~L~~~l~~~-~~~ 100 (338)
T cd07859 24 TGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME--SDLHQVIKAN-DDL 100 (338)
T ss_pred CCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC--CCHHHHHHhc-ccC
Confidence 355688988764321 2223355677778888999999875 1 24799999996 4677665431 123
Q ss_pred eeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 731 VWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 731 ~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
.+.....+ +..+++|+.|||...+ |+.+|++|++++....+|++|||+............ ......
T Consensus 101 ~~~~~~~i--------~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~---~~~~~~-- 167 (338)
T cd07859 101 TPEHHQFF--------LYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAI---FWTDYV-- 167 (338)
T ss_pred CHHHHHHH--------HHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCccc---cccCCC--
Confidence 33333333 5678899999999998 999999999999999999999998754211111000 000000
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
-..+|.|||+.... ....+.+.||||+|++++++++|..||.
T Consensus 168 --~t~~y~aPE~~~~~---------~~~~~~~~DvwSlGvvl~el~tg~~pf~ 209 (338)
T cd07859 168 --ATRWYRAPELCGSF---------FSKYTPAIDIWSIGCIFAEVLTGKPLFP 209 (338)
T ss_pred --CCCCcCCHHHHhcc---------ccccCchhHHHHHHHHHHHHHcCCCCCC
Confidence 11236788875311 0112345799999999999999887774
No 405
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=98.79 E-value=3e-11 Score=132.80 Aligned_cols=224 Identities=9% Similarity=-0.031 Sum_probs=139.0
Q ss_pred CCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeE
Q 001416 665 APQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV 739 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~ 739 (1081)
...++|.+.-........+..|+..++=.+|.|++.+. ....++++||++. ++|.+........+.......+
T Consensus 29 ~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~-~~l~~~~~~~~~~l~~~~~~~~- 106 (262)
T cd06613 29 ELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGG-GSLQDIYQVTRGPLSELQIAYV- 106 (262)
T ss_pred CEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCC-CcHHHHHHhhccCCCHHHHHHH-
Confidence 34788887665544444466667777777899999887 4678899999998 8888765432123332222222
Q ss_pred eccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccC
Q 001416 740 VTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHA 818 (1081)
Q Consensus 740 ~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1081)
+..+..|+.|||...+ ||.++++|++++..-.+|++|||+...-..... ...... ...+|.|
T Consensus 107 -------~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~~~--------~~~~y~~ 169 (262)
T cd06613 107 -------CRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA--KRKSFI--------GTPYWMA 169 (262)
T ss_pred -------HHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhh--cccccc--------CCccccC
Confidence 4567889999999988 999999999999998899999998654211100 000001 1223788
Q ss_pred CCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccc
Q 001416 819 ASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHA 898 (1081)
Q Consensus 819 p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 898 (1081)
||+......+ ....+.||||+|++++++++|..|+....-. ...+.... ..
T Consensus 170 Pe~~~~~~~~--------~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~-------~~~~~~~~-~~------------- 220 (262)
T cd06613 170 PEVAAVERKG--------GYDGKCDIWALGITAIELAELQPPMFDLHPM-------RALFLISK-SN------------- 220 (262)
T ss_pred chhhcccccC--------CcCchhhhHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHHh-cc-------------
Confidence 8875321100 1223479999999999999988776421100 00000000 00
Q ss_pred cCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 899 LSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
++........+......++++.||..+|..||++..|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il 258 (262)
T cd06613 221 FPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLL 258 (262)
T ss_pred CCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 00000000111233456899999999999999998874
No 406
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=98.79 E-value=5.3e-11 Score=131.70 Aligned_cols=224 Identities=9% Similarity=-0.007 Sum_probs=135.5
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeec-ccCceEEEe----ee-------eEEEEEecCcccccccccccccc---c
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWD-QTVEYCAFA----YQ-------HYIVISSLCPQYRYLGDVAIPYA---T 728 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~-~~~~~~~~~----~~-------~~~~v~~y~~~~gsl~d~~~~~~---~ 728 (1081)
++.+++|.+.-.... ...+..|+..++.. +|.|++.+. .+ ..++|++||+. ++|.+.+.... .
T Consensus 31 ~~~~~~k~~~~~~~~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~ 108 (275)
T cd06608 31 GQLVAIKIMDIIEDE-EEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGG-GSVTDLVKGLRKKGK 108 (275)
T ss_pred CcEEEEEEEecCchh-HHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCC-CcHHHHHHHHhhcCC
Confidence 344777776644321 12234455555555 689998877 12 37899999998 88887754311 2
Q ss_pred ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcch
Q 001416 729 GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPML 807 (1081)
Q Consensus 729 ~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~ 807 (1081)
.+++.....+ +..+..|+.|||...+ ||.++.+|++++....+|++|||+........... ......
T Consensus 109 ~~~~~~~~~~--------~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~--~~~~~~-- 176 (275)
T cd06608 109 RLKEEWIAYI--------LRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRR--NTFIGT-- 176 (275)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceecccchhhh--cCcccc--
Confidence 2333332233 5568889999999998 99999999999999999999999876532211110 001111
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeE
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVL 887 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 887 (1081)
..|.|||+....... ...-..+.||||+|++++++++|..|+...+-. +... ....+
T Consensus 177 ------~~y~aPE~~~~~~~~------~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~--------~~~~~-- 233 (275)
T cd06608 177 ------PYWMAPEVIACDEQP------DASYDARSDVWSLGITAIELADGKPPLCDMHPM-RALF--------KIPRN-- 233 (275)
T ss_pred ------ccccCHhHhcccccc------cCCccccccHHHhHHHHHHHHhCCCCccccchH-HHHH--------Hhhcc--
Confidence 128899975322111 111234579999999999999988877522110 0000 00000
Q ss_pred EEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 888 WLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 888 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
....+.. .........++++.|+..+|..||+..++.
T Consensus 234 ---------~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll 270 (275)
T cd06608 234 ---------PPPTLKS---PENWSKKFNDFISECLIKNYEQRPFMEELL 270 (275)
T ss_pred ---------CCCCCCc---hhhcCHHHHHHHHHHhhcChhhCcCHHHHh
Confidence 0000000 001233556899999999999999988774
No 407
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=98.79 E-value=1.5e-11 Score=135.36 Aligned_cols=223 Identities=11% Similarity=-0.000 Sum_probs=136.9
Q ss_pred CCCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 663 EAAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
.+..+++|.+...... ...++..|++.++-.+|.|++.+. ....+++++||+. ++|.+.+......+......
T Consensus 25 ~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~ 103 (265)
T cd06605 25 TGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDG-GSLDKILKEVQGRIPERILG 103 (265)
T ss_pred CCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCC-CcHHHHHHHccCCCCHHHHH
Confidence 3555788877665432 223355566666667788887764 4678999999998 78888765421122211111
Q ss_pred eeEeccCceEEEeeeCCccccch-hhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDV-ETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~-s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
.+ +..+..|+.|||. ..+ |+.++++|++++....+|++|||+........... ......
T Consensus 104 ~~--------~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~----~~~~~~------- 164 (265)
T cd06605 104 KI--------AVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT----FVGTSS------- 164 (265)
T ss_pred HH--------HHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhc----ccCChh-------
Confidence 12 4577889999999 777 99999999999999999999999865422111110 111111
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
|.|||.... ...+.+.||||+|+++++++.|..|+....-+.+ .+. .. +.+..
T Consensus 165 -y~~PE~~~~-----------~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~-----~~~---~~-------~~~~~ 217 (265)
T cd06605 165 -YMAPERIQG-----------NDYSVKSDIWSLGLSLIELATGRFPYPPENDPPD-----GIF---EL-------LQYIV 217 (265)
T ss_pred -ccCHHHHcC-----------CCCCchhhHHHHHHHHHHHHhCCCCCCccccccc-----cHH---HH-------HHHHh
Confidence 667776421 1234557999999999999998888753211100 000 00 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
... +...+.. .......+++..|+..+|..||++.++.
T Consensus 218 ~~~--~~~~~~~--~~~~~~~~li~~~l~~~p~~Rpt~~~ll 255 (265)
T cd06605 218 NEP--PPRLPSG--KFSPDFQDFVNLCLIKDPRERPSYKELL 255 (265)
T ss_pred cCC--CCCCChh--hcCHHHHHHHHHHcCCCchhCcCHHHHh
Confidence 000 0000000 1344567899999999999999988874
No 408
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=98.79 E-value=9.9e-11 Score=128.23 Aligned_cols=218 Identities=9% Similarity=0.006 Sum_probs=132.0
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
+++|.+...... ......|++.++-.+|.|++.+. ....++|++||+. ++|.+.+......+.|.....+
T Consensus 31 ~~~k~~~~~~~~-~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~~~~~~~~~~~~~--- 105 (256)
T cd05112 31 VAIKTIREGAMS-EEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEH-GCLSDYLRAQRGKFSQETLLGM--- 105 (256)
T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCC-CcHHHHHHhCccCCCHHHHHHH---
Confidence 566655432211 11233455566666788888877 3578999999999 8988776543222333322222
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..+..|+.|||...+ |+.++++|++++....+|++|||+............ .....+.- |.|||
T Consensus 106 -----~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~-~~~~~~~~--------~~aPe 171 (256)
T cd05112 106 -----CLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSS-TGTKFPVK--------WSSPE 171 (256)
T ss_pred -----HHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCccccc-CCCccchh--------hcCHh
Confidence 4467789999999888 999999999999999999999998764322111100 00001111 56777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
.... ...+.+.||||+|++++|+.. |..|+...... +.... ...+ .
T Consensus 172 ~~~~-----------~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~--~~~~~-------~~~~-------------~ 218 (256)
T cd05112 172 VFSF-----------SKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNS--EVVET-------INAG-------------F 218 (256)
T ss_pred Hhcc-----------CCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHH--HHHHH-------HhCC-------------C
Confidence 6531 113345799999999998876 44444311100 00000 0000 0
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
.+..+. .......+++..||..+|..||.+..+.+.|
T Consensus 219 ~~~~~~---~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l 255 (256)
T cd05112 219 RLYKPR---LASQSVYELMQHCWKERPEDRPSFSLLLHQL 255 (256)
T ss_pred CCCCCC---CCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence 000000 1234566899999999999999999998776
No 409
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=98.79 E-value=3.5e-11 Score=135.14 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=144.5
Q ss_pred CCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc-eeeEeeee
Q 001416 665 APQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG-AVWHRRQL 737 (1081)
Q Consensus 665 ~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~-~~w~~~~~ 737 (1081)
..+|+|...=.. ....+..+.|+|.|--..|+|++.++ -+-+|+|+||=-- |.|..-+....-. ++-.+-.+
T Consensus 563 lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEn-GDLnqFl~aheapt~~t~~~vs 641 (807)
T KOG1094|consen 563 LKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMEN-GDLNQFLSAHELPTAETAPGVS 641 (807)
T ss_pred eEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhc-CcHHHHHHhccCcccccchhHH
Confidence 556666643332 22234477899999999999999998 4678999999766 8777443332211 22223333
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeee-cccchhhhcccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAV-ESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
. |++|..||.||..-.+ |+-+...||+||+.+.+||+|||+..= -..+.-... ...--|.-
T Consensus 642 i--------~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vq-gr~vlpiR-------- 704 (807)
T KOG1094|consen 642 I--------CTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQ-GRAVLPIR-------- 704 (807)
T ss_pred H--------HHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeee-cceeeeee--------
Confidence 4 7899999999988777 999999999999999999999997641 111000000 00001122
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeee--cCCcceeeecCCCCCCCCC-CCCcEEeeeecCeEEEEec
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAV--GGGGVAVAVTRFPTEQKRP-IGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~--~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~d~ 892 (1081)
|.|||-.-. |+ -+.+.|||.|++-+.|+ .++..||...+-+ +... .+.++.- ....+|+.
T Consensus 705 wmawEsill----------gk-FttaSDvWafgvTlwE~~~~C~e~Py~~lt~e--~vven~~~~~~~--~~~~~~l~-- 767 (807)
T KOG1094|consen 705 WMAWESILL----------GK-FTTASDVWAFGVTLWEVFMLCREQPYSQLTDE--QVVENAGEFFRD--QGRQVVLS-- 767 (807)
T ss_pred ehhHHHHHh----------cc-ccchhhhhhhHHHHHHHHHHHhhCchhhhhHH--HHHHhhhhhcCC--CCcceecc--
Confidence 888876421 21 22347999999986666 4788888633221 1100 0000000 01112211
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhcC
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMG 943 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~ 943 (1081)
.+ ..|+...-+++..||.-+...||.|+++-++|+..+
T Consensus 768 ---------~P----~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~~ 805 (807)
T KOG1094|consen 768 ---------RP----PACPQGLYELMLRCWRRESEQRPSFEQLHLFLQEDA 805 (807)
T ss_pred ---------CC----CcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHhc
Confidence 11 135555569999999999999999999999998764
No 410
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=98.79 E-value=7.1e-11 Score=129.28 Aligned_cols=219 Identities=7% Similarity=-0.036 Sum_probs=137.9
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~ 735 (1081)
|..+++|.++-+... -......|++.++-.+|.|++.+. ....++|+||++. ++|.+.+... ...+.+...
T Consensus 25 ~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~ 103 (256)
T cd08529 25 KRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAEN-GDLHKLLKMQRGRPLPEDQV 103 (256)
T ss_pred CcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCC-CcHHHHHHHhcCCCCCHHHH
Confidence 445778877644322 122244566667778899999887 4568999999998 8988776542 122333222
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+.+|+.|||...+ |+.++++|++++....+|++|||+...-........ ..... .
T Consensus 104 ~~i--------~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~--~~~~~--------~ 165 (256)
T cd08529 104 WRF--------FIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFAN--TIVGT--------P 165 (256)
T ss_pred HHH--------HHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhh--ccccC--------c
Confidence 223 4578889999999888 999999999999999999999998654221111000 00111 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|.|||+.... ....+.|+||+|++++++++|..|+.... .++... ....+
T Consensus 166 ~y~aPE~~~~~-----------~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~-------~~~~~--------- 216 (256)
T cd08529 166 YYLSPELCEDK-----------PYNEKSDVWALGVVLYECCTGKHPFDANN--QGALIL-------KIIRG--------- 216 (256)
T ss_pred cccCHHHhcCC-----------CCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHHH-------HHHcC---------
Confidence 26788875321 12345799999999999999887774221 000000 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
. .+.+.........+++++||..+|..||....|.+
T Consensus 217 -----~--~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 252 (256)
T cd08529 217 -----V--FPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR 252 (256)
T ss_pred -----C--CCCCccccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence 0 00011123345678999999999999999988743
No 411
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=98.79 E-value=1.2e-10 Score=128.58 Aligned_cols=224 Identities=9% Similarity=0.013 Sum_probs=135.2
Q ss_pred CCCccEEEEeeccccc---------cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc
Q 001416 664 AAPQNFQLYSWETFQP---------VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG 729 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---------~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~ 729 (1081)
+..+++|.+....... ...+..|++.+.-.+|.|++.+. ....++++||++. ++|.+.+.+. ..
T Consensus 25 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~ 102 (267)
T cd06628 25 GELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPG-GSVAALLNNY-GA 102 (267)
T ss_pred CcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCC-CCHHHHHHhc-cC
Confidence 4457777665433221 12233455556666899988887 4567899999998 8888766431 22
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.+.....+ +..+..|+.|||...+ ||.++++|++++.+..+|++|||+................+..+
T Consensus 103 l~~~~~~~~--------~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~-- 172 (267)
T cd06628 103 FEETLVRNF--------VRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSL-- 172 (267)
T ss_pred ccHHHHHHH--------HHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCcccccccc--
Confidence 232222223 5577889999999888 99999999999999999999999875422111000000000000
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
.-...|.|||..... ..+.+.||||+|++++++++|..|+....-. .. ... ....
T Consensus 173 --~~~~~y~~pe~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~------~~~--~~~~--- 227 (267)
T cd06628 173 --QGSVFWMAPEVVKQT-----------SYTRKADIWSLGCLVVEMLTGKHPFPDCTQL-QA------IFK--IGEN--- 227 (267)
T ss_pred --CCCcCccChhHhccC-----------CCCchhhhHHHHHHHHHHhhCCCCCCCccHH-HH------HHH--Hhcc---
Confidence 011126677765321 1233479999999999999988877421100 00 000 0000
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..+.+.........++++.||..+|..||..+.|.+
T Consensus 228 -------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 228 -------------ASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred -------------CCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence 000111134456678999999999999999887753
No 412
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=98.79 E-value=3.6e-11 Score=134.25 Aligned_cols=217 Identities=9% Similarity=-0.028 Sum_probs=139.5
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
+..+++|.++-... ....+..|+..++-.+|.|++.+. ....++|++||+. ++|.+++......+++.....+
T Consensus 44 ~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~l~~~~~~~i 121 (286)
T cd06614 44 GKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDG-GSLTDIITQNFVRMNEPQIAYV 121 (286)
T ss_pred CcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCC-CcHHHHHHHhccCCCHHHHHHH
Confidence 34478887765433 122344566667777899999877 4678999999998 8999887764324555544444
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+..|+.|||...+ ||.++++|++++....+|++|||+......... .+...... ..|.
T Consensus 122 --------~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~--------~~y~ 183 (286)
T cd06614 122 --------CREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGT--------PYWM 183 (286)
T ss_pred --------HHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh--hhccccCC--------cccC
Confidence 5678889999999888 999999999999999999999998653221110 00000011 1266
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCC--CCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPT--EQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
+||.... ...+.+.||||+|++++++++|..|+....-.. ..+....+.
T Consensus 184 ~PE~~~~-----------~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~------------------ 234 (286)
T cd06614 184 APEVIKR-----------KDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIP------------------ 234 (286)
T ss_pred CHhHhcC-----------CCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCC------------------
Confidence 7776421 112345799999999999998877764211000 000000000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
++. ....+.....++++.|+..+|..||++..|.
T Consensus 235 ----~~~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il 268 (286)
T cd06614 235 ----PLK---NPEKWSPEFKDFLNKCLVKDPEKRPSAEELL 268 (286)
T ss_pred ----CCc---chhhCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence 000 0001334567899999999999999999885
No 413
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.79 E-value=3.2e-07 Score=95.60 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=98.4
Q ss_pred EEEEeeccccCCCCEEEEEEC----------CCeEEEEEcC-CCeEEEEEecccccceEEEEEeeeCCCCCEEEEE--eC
Q 001416 169 CMEFLSRSAVGDVPLVAFGSS----------DGVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG--GS 235 (1081)
Q Consensus 169 ~ia~~p~~~sp~~~~l~sgs~----------Dg~I~lwd~~-~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sg--s~ 235 (1081)
.+.| +++|.+|++-.. -+...+|.++ ....+..+.....++|.+++| +|+++.|+.. ..
T Consensus 10 ~~~W-----~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W---sP~g~~favi~g~~ 81 (194)
T PF08662_consen 10 KLHW-----QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW---SPNGNEFAVIYGSM 81 (194)
T ss_pred EEEe-----cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE---CcCCCEEEEEEccC
Confidence 4566 567777654433 1345555553 223444443245567999997 8888887554 46
Q ss_pred CCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC---CeEEEEECCCCceeeEecCCCcccc
Q 001416 236 DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLAC 312 (1081)
Q Consensus 236 Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D---g~V~iWDl~t~~~~~~~~~~~~~~~ 312 (1081)
++.|.+||++ ++. ...+ +...++.+.|+| +|++|++++.+ |.|.+||.++.+.+.+. .
T Consensus 82 ~~~v~lyd~~-~~~------i~~~--~~~~~n~i~wsP---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-------~ 142 (194)
T PF08662_consen 82 PAKVTLYDVK-GKK------IFSF--GTQPRNTISWSP---DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-------E 142 (194)
T ss_pred CcccEEEcCc-ccE------eEee--cCCCceEEEECC---CCCEEEEEEccCCCcEEEEEECCCCEEeecc-------c
Confidence 7899999996 332 2223 346788999999 99999998754 67999999988887654 2
Q ss_pred CCCCeEEEeecCCCCEE-EEEC------Cc--eEEEec
Q 001416 313 HSVASWCHPRAPNLDIL-TCVK------DS--HIWAIE 341 (1081)
Q Consensus 313 h~~~v~~v~~spd~~ll-s~s~------D~--~IWdi~ 341 (1081)
|. .+..++|+|+|+++ +++. |+ +||++.
T Consensus 143 ~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 143 HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 33 46799999999976 3332 32 688876
No 414
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=98.79 E-value=8.5e-11 Score=128.81 Aligned_cols=218 Identities=7% Similarity=0.007 Sum_probs=135.3
Q ss_pred CCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe----ee--eEEEEEecCccccccccccccc-ccceeeEe
Q 001416 664 AAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA----YQ--HYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~----~~--~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
|..+++|.+..+.. ...+....|++.++-.+|.|++.+. .. ..+++++||+. ++|.+.+... ...+.+..
T Consensus 25 ~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~-~~l~~~l~~~~~~~l~~~~ 103 (257)
T cd08223 25 GKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEG-GDLYHKLKEQKGKLLPENQ 103 (257)
T ss_pred CcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCC-CcHHHHHHHhcCCCCCHHH
Confidence 44578888765432 1122234455556666788888876 12 36899999998 8887765431 11233333
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ ||.++++|++++....+|++|||+...-........ ... ..
T Consensus 104 ~~~~--------~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~--~~~--------~~ 165 (257)
T cd08223 104 VVEW--------FVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMAS--TLI--------GT 165 (257)
T ss_pred HHHH--------HHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCCccc--ccc--------CC
Confidence 2333 5578889999999888 999999999999999999999999865322111100 000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
..|.|||+.... ..+.+.||||+|++++++++|..|+...... .. .+. ...+
T Consensus 166 ~~y~aPE~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~--~~-----~~~--~~~~-------- 217 (257)
T cd08223 166 PYYMSPELFSNK-----------PYNYKSDVWALGCCVYEMATLKHAFNAKDMN--SL-----VYR--IIEG-------- 217 (257)
T ss_pred cCccChhHhcCC-----------CCCchhhhHHHHHHHHHHHcCCCCCCCCCHH--HH-----HHH--HHhc--------
Confidence 126788875321 1234579999999999999887776421111 00 000 0000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.+ +.+.-.......+++..|+..+|..||+...+.
T Consensus 218 ------~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 252 (257)
T cd08223 218 ------KL--PPMPKDYSPELGELIATMLSKRPEKRPSVKSIL 252 (257)
T ss_pred ------CC--CCCccccCHHHHHHHHHHhccCcccCCCHHHHh
Confidence 00 000112334567999999999999999987764
No 415
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=98.78 E-value=6.2e-11 Score=132.36 Aligned_cols=168 Identities=8% Similarity=-0.058 Sum_probs=112.8
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEe
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
|+.+++|.+..+...- ......|++.++-.+|.|++.+. .+..++|++||+. |+|.+.+... ...+.+..
T Consensus 25 ~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~ 103 (285)
T cd05605 25 GKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG-GDLKFHIYNMGNPGFDEER 103 (285)
T ss_pred CceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCC-CcHHHHHHhcCcCCCCHHH
Confidence 5568888886543221 11123366666777899999886 3579999999998 8888665431 11233332
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..+++|+.|||...+ |+.++.+|++++..-.++++|||+...-........ ......
T Consensus 104 ~~~~--------~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~---~~~~~~------ 166 (285)
T cd05605 104 AVFY--------AAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRG---RVGTVG------ 166 (285)
T ss_pred HHHH--------HHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcccc---ccCCCC------
Confidence 2223 5678899999999888 999999999999999999999998754211100000 001112
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||+... ...+.+.||||+|++++|++.|..||.
T Consensus 167 --y~aPE~~~~-----------~~~~~~~Diws~G~~l~el~~g~~pf~ 202 (285)
T cd05605 167 --YMAPEVVKN-----------ERYTFSPDWWGLGCLIYEMIEGKSPFR 202 (285)
T ss_pred --ccCcHHhcC-----------CCCCccccchhHHHHHHHHHHCCCCCC
Confidence 778887531 112334699999999999999888875
No 416
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=98.78 E-value=1.3e-10 Score=132.81 Aligned_cols=171 Identities=5% Similarity=-0.108 Sum_probs=107.9
Q ss_pred CCCCccEEEEeecccc----ccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccccceee
Q 001416 663 EAAPQNFQLYSWETFQ----PVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW 732 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~----l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w 732 (1081)
.|..+++|.+...... ...+...|.+.+.-. +|.+++.+. ....++|+|||+. |+|.+.+... ..+.+
T Consensus 27 ~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~-~~~~~ 104 (332)
T cd05614 27 TGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSG-GEMFTHLYQR-DNFSE 104 (332)
T ss_pred CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCC-CcHHHHHHHc-CCCCH
Confidence 4666899988754321 111223344444434 467777665 3467899999998 8887665431 11222
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
..-..+ +..++.|+.|||...+ |+.+|.+|++++....+|++|||+...-........ .......
T Consensus 105 ~~~~~~--------~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~-~~~~gt~----- 170 (332)
T cd05614 105 DEVRFY--------SGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERT-YSFCGTI----- 170 (332)
T ss_pred HHHHHH--------HHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCcc-ccccCCc-----
Confidence 211122 4468889999999988 999999999999999999999998653111100000 0001111
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+..... ..+.+.||||+|++++|+++|..|+.
T Consensus 171 ---~y~aPE~~~~~~----------~~~~~~DiwslG~il~elltg~~pf~ 208 (332)
T cd05614 171 ---EYMAPEIIRGKG----------GHGKAVDWWSLGILIFELLTGASPFT 208 (332)
T ss_pred ---cccCHHHhcCCC----------CCCCccccccchhhhhhhhcCCCCCC
Confidence 267888753210 01234699999999999999988875
No 417
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=98.78 E-value=5.2e-11 Score=131.13 Aligned_cols=220 Identities=10% Similarity=0.049 Sum_probs=134.7
Q ss_pred ccEEEEeeccccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccc-cceeeEeeeeeEec
Q 001416 667 QNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~~~~~~t 741 (1081)
+++|.+..+.... .+...|+..++=.+|.|++.+. ....++|++||+. |+|.+.+.... ..+.|.....+
T Consensus 33 valK~~~~~~~~~-~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~--- 107 (262)
T cd05071 33 VAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK-GSLLDFLKGEMGKYLRLPQLVDM--- 107 (262)
T ss_pred EEEEecccCccCH-HHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCC-CcHHHHHhhccccCCCHHHHHHH---
Confidence 6788776433211 1123344445556788888766 3456899999998 88877664321 12333333333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
...+++|+.|||...+ |+.++++|++++..-.+|++|||+...-...... .......+.. |.+||
T Consensus 108 -----~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~~~~~~~--------y~~PE 173 (262)
T cd05071 108 -----AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIK--------WTAPE 173 (262)
T ss_pred -----HHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccc-cccCCcccce--------ecCHh
Confidence 5578899999999988 9999999999999999999999987642111100 0000011122 56777
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecCCcc-eeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGV-AVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
.... ..-+.+.||||+|+++++++++|. |+.. ...++ .+.. .... ...
T Consensus 174 ~~~~-----------~~~~~~~DvwslG~~l~ellt~g~~p~~~--~~~~~------~~~~-~~~~-----------~~~ 222 (262)
T cd05071 174 AALY-----------GRFTIKSDVWSFGILLTELTTKGRVPYPG--MVNRE------VLDQ-VERG-----------YRM 222 (262)
T ss_pred Hhcc-----------CCCCchhhHHHHHHHHHHHHcCCCCCCCC--CChHH------HHHH-HhcC-----------CCC
Confidence 5421 112345799999999999988544 4421 11000 0000 0000 000
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
+. .-.++....+++..|+..+|..||++..+..+|+.
T Consensus 223 ~~-----~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~ 259 (262)
T cd05071 223 PC-----PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 259 (262)
T ss_pred CC-----ccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence 11 11244556799999999999999999999999875
No 418
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=98.78 E-value=7.2e-11 Score=131.46 Aligned_cols=223 Identities=10% Similarity=0.062 Sum_probs=132.1
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeec-ccCceEEEe-----------eeeEEEEEecCcccccccccccccc-cce
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWD-QTVEYCAFA-----------YQHYIVISSLCPQYRYLGDVAIPYA-TGA 730 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~-~~~~~~~~~-----------~~~~~~v~~y~~~~gsl~d~~~~~~-~~~ 730 (1081)
+..+++|.++...... ..+..|.+.+.-. +|.|++.+. ....++++|||+. |+|.+.+.... ..+
T Consensus 41 ~~~~a~K~~~~~~~~~-~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~-~~L~~~~~~~~~~~~ 118 (282)
T cd06636 41 GQLAAIKVMDVTEDEE-EEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGA-GSVTDLVKNTKGNAL 118 (282)
T ss_pred CcEEEEEEEecChHHH-HHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCC-CcHHHHHHHccCCCC
Confidence 3447788775543211 1222333322222 688999876 1357899999998 88887664311 112
Q ss_pred eeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 731 VWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 731 ~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
.+.....+ +..+..|+.|||...+ |+.++++|++++..-.+|++|||+...-........ .....
T Consensus 119 ~~~~~~~~--------~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~---- 184 (282)
T cd06636 119 KEDWIAYI--------CREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRN--TFIGT---- 184 (282)
T ss_pred CHHHHHHH--------HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCC--ccccc----
Confidence 22211222 4468889999999988 999999999999999999999998653111000000 00011
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEE
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWL 889 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 889 (1081)
-.|.|||+......+ +...+.+.||||+|++++|+++|..|+.... +.++ ...
T Consensus 185 ----~~y~aPE~l~~~~~~------~~~~~~~~DvwslG~~l~el~~g~~p~~~~~-~~~~------~~~---------- 237 (282)
T cd06636 185 ----PYWMAPEVIACDENP------DATYDYRSDIWSLGITAIEMAEGAPPLCDMH-PMRA------LFL---------- 237 (282)
T ss_pred ----ccccCHhhcCcccCc------CcCCCcccchhHHHHHHHHHHhCCCCccccC-HHhh------hhh----------
Confidence 126788875321111 1112335799999999999999888774221 1000 000
Q ss_pred EeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 890 IDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 890 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
+.+ +.......-.+.....++++.||..+|..||++..|.
T Consensus 238 ~~~-------~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell 277 (282)
T cd06636 238 IPR-------NPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLL 277 (282)
T ss_pred Hhh-------CCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHh
Confidence 000 0000111113455677999999999999999998874
No 419
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=98.78 E-value=3.7e-11 Score=134.13 Aligned_cols=216 Identities=12% Similarity=-0.014 Sum_probs=135.9
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
+..+++|.++-........+..|...++-..|.|++.+. ....+++++|++. ++|.+.+.+ ..+.+.....+
T Consensus 44 ~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~--~~~~~~~~~~~ 120 (285)
T cd06648 44 GRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG-GALTDIVTH--TRMNEEQIATV 120 (285)
T ss_pred CCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC-CCHHHHHHh--CCCCHHHHHHH
Confidence 344777766433222112233344556666788988887 4788999999998 888887654 23333332333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..+..|+.|||...+ ||.++.+|++++....+|++|||+...-....... ...... ..|.
T Consensus 121 --------~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~--~~~~~~--------~~y~ 182 (285)
T cd06648 121 --------CLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRR--KSLVGT--------PYWM 182 (285)
T ss_pred --------HHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCccc--ccccCC--------cccc
Confidence 5678889999999988 99999999999999999999999765322111110 001111 1277
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCC--CCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFP--TEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
|||..... ..+.+.||||+|++++++++|..|+...... ....+...+.
T Consensus 183 aPE~~~~~-----------~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~------------------ 233 (285)
T cd06648 183 APEVISRL-----------PYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPP------------------ 233 (285)
T ss_pred CHHHhcCC-----------CCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCC------------------
Confidence 88875321 1234579999999999999988876421100 0000000000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.+ .....+.....+++..|+..+|..||....|.
T Consensus 234 ----~~---~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il 267 (285)
T cd06648 234 ----KL---KNLHKVSPRLRSFLDRMLVRDPAQRATAAELL 267 (285)
T ss_pred ----CC---cccccCCHHHHHHHHHHcccChhhCcCHHHHc
Confidence 00 00012345567999999999999999988875
No 420
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=98.77 E-value=4.1e-11 Score=138.05 Aligned_cols=231 Identities=8% Similarity=-0.048 Sum_probs=139.1
Q ss_pred CCCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..++||.+..... .....+..|.+.+.-..|.|++.+. ..+.++|+|||+. |+|.+.+.+. ..+....
T Consensus 25 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~l~~~~ 102 (350)
T cd05573 25 TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPG-GDLMNLLIRK-DVFPEET 102 (350)
T ss_pred CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCC-CCHHHHHHHc-CCCCHHH
Confidence 456689998876532 1122344566667777899999886 4678999999998 8998877653 2222222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh-h---ccc---------
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA-Q---DRI--------- 800 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~-~---~~~--------- 800 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+.......... . ...
T Consensus 103 ~~~i--------~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (350)
T cd05573 103 ARFY--------IAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVL 174 (350)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccccccccccc
Confidence 2222 4578899999999888 9999999999999999999999987642211100 0 000
Q ss_pred ------ccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCC
Q 001416 801 ------KLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPI 874 (1081)
Q Consensus 801 ------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1081)
...........-...|.|||+.... ..+.+.||||+|++++|+++|..|+...... +...
T Consensus 175 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~-~~~~-- 240 (350)
T cd05573 175 VRRRDHKQRRVRANSTVGTPDYIAPEVLRGT-----------PYGLECDWWSLGVILYEMLYGFPPFYSDTLQ-ETYN-- 240 (350)
T ss_pred ccccccccccccccccccCccccCHHHHcCC-----------CCCCceeeEecchhhhhhccCCCCCCCCCHH-HHHH--
Confidence 0000000000011125677765321 2345579999999999999998887532211 0000
Q ss_pred CCcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCccc-HHHHHH
Q 001416 875 GPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREH-HDDLAQ 937 (1081)
Q Consensus 875 ~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~i~~ 937 (1081)
. +...... ..+|... .......+++..|.. +|..||. ...+.+
T Consensus 241 -~--i~~~~~~-----------~~~p~~~-----~~~~~~~~li~~ll~-dp~~R~~s~~~ll~ 284 (350)
T cd05573 241 -K--IINWKES-----------LRFPPDP-----PVSPEAIDLICRLLC-DPEDRLGSFEEIKS 284 (350)
T ss_pred -H--HhccCCc-----------ccCCCCC-----CCCHHHHHHHHHHcc-ChhhcCCCHHHHhc
Confidence 0 0000000 0011110 134456688889986 8899988 777754
No 421
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=98.77 E-value=3.4e-11 Score=132.32 Aligned_cols=224 Identities=8% Similarity=-0.032 Sum_probs=139.4
Q ss_pred CCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.+..+.. .....+..|.+.+.=..|.|++.+. ....++|++|++. ++|.+++.+.. .+.+...
T Consensus 18 ~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~-~~~~~~~ 95 (265)
T cd05579 18 GDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPG-GDLASLLENVG-SLDEDVA 95 (265)
T ss_pred CCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCC-CcHHHHHHHcC-CCCHHHH
Confidence 45588888765544 2222344444455555688888766 4678999999998 88887765422 2333333
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh------hcccccCCcchh
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA------QDRIKLRPPMLQ 808 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~------~~~~~~~~~~~~ 808 (1081)
..+ +..+..|+.|||...+ ||.++++|++++....+|++|||+.......... ...........
T Consensus 96 ~~i--------~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (265)
T cd05579 96 RIY--------IAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPD- 166 (265)
T ss_pred HHH--------HHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCcc-
Confidence 333 5568889999999888 9999999999999999999999987652221100 00000111112
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
|.+||..... ..+.+.||||+|++++++++|..|+...... + .+. .....
T Consensus 167 -------~~~Pe~~~~~-----------~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~--~------~~~-~~~~~--- 216 (265)
T cd05579 167 -------YIAPEVILGQ-----------GHSKTVDWWSLGCILYEFLVGIPPFHGETPE--E------IFQ-NILNG--- 216 (265)
T ss_pred -------ccCHHHhcCC-----------CCCcchhhHHHHHHHHHHHhCCCCCCCCCHH--H------HHH-HHhcC---
Confidence 6777765321 1334579999999999999887776422110 0 000 00000
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
.+..+. .+.......++++.|+..+|..||++..+...|+
T Consensus 217 -----------~~~~~~-~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~ 256 (265)
T cd05579 217 -----------KIEWPE-DVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN 256 (265)
T ss_pred -----------CcCCCc-cccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence 000000 0112445679999999999999999977776654
No 422
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=98.77 E-value=5.1e-11 Score=133.82 Aligned_cols=228 Identities=8% Similarity=-0.015 Sum_probs=132.7
Q ss_pred CccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc----------
Q 001416 666 PQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG---------- 729 (1081)
Q Consensus 666 ~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~---------- 729 (1081)
.+++|.+.-.... ....+..|++.++-.+|.|++.+. ....++|+|||+. |+|.+.+.+....
T Consensus 48 ~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~ 126 (296)
T cd05095 48 LVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMEN-GDLNQFLSRHEPQEAAEKADVVT 126 (296)
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCC-CcHHHHHHhcCcccccccccccc
Confidence 4677776533211 111234456666667888988876 4678999999998 8888665432110
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.+.....+ +..++.|+.|||...+ |+.+|++|++++.+..+|++|||+...-..............+..
T Consensus 127 ~~~~~~~~~--------~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~- 197 (296)
T cd05095 127 ISYSTLIFM--------ATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIR- 197 (296)
T ss_pred cCHHHHHHH--------HHHHHHHHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccc-
Confidence 111111112 4577889999999888 999999999999999999999998642111000000000000111
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCC--cceeeecCCCCCCCCCC-CCcEEeeeecC
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGG--GVAVAVTRFPTEQKRPI-GPLVVVGVKDG 885 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~--~~~~~~~~~~~~~~~~~-~p~~~~~~~~~ 885 (1081)
|.|||.... + .-+.+.||||+|++++|++++ ..|+. .++.++.... ...+.. ..
T Consensus 198 -------~~~pe~~~~----------~-~~~~~~DiwSlG~~l~el~~~~~~~p~~--~~~~~~~~~~~~~~~~~---~~ 254 (296)
T cd05095 198 -------WMSWESILL----------G-KFTTASDVWAFGVTLWEILTLCKEQPYS--QLSDEQVIENTGEFFRD---QG 254 (296)
T ss_pred -------cCCHHHHhc----------C-CccchhhhhHHHHHHHHHHHhCCCCCcc--ccChHHHHHHHHHHHhh---cc
Confidence 456654211 1 123457999999999999863 33442 2221111000 000000 00
Q ss_pred eEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 886 VLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 886 ~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
... ..+. .-.|+....+++..||..+|..||.+..|...|+
T Consensus 255 --------~~~-~~~~-----~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 255 --------RQV-YLPK-----PALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred --------ccc-cCCC-----CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 000 0010 0124456779999999999999999999988876
No 423
>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning
Probab=98.77 E-value=6.6e-11 Score=132.09 Aligned_cols=170 Identities=7% Similarity=-0.074 Sum_probs=111.4
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
++.+++|.++..... ....+..|++.++=.+|.|++.++ ....++++|||+. +.+.....+ ..++.+....
T Consensus 26 ~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~-~~l~~~~~~-~~~~~~~~~~ 103 (288)
T cd07833 26 GEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVER-TLLELLEAS-PGGLPPDAVR 103 (288)
T ss_pred CcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCC-CHHHHHHhc-CCCCCHHHHH
Confidence 445788877654322 112244556666666799988887 4568999999997 666543332 2223333322
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..+.+|+.|||...+ |+.++.+|++++....+|++|||+...-........ . .+....+
T Consensus 104 ~~--------~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~-~--------~~~~~~~ 166 (288)
T cd07833 104 SY--------IWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPL-T--------DYVATRW 166 (288)
T ss_pred HH--------HHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccc-c--------CcccccC
Confidence 23 5578899999999998 999999999999999999999998765222111000 0 0011223
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||+..... ..+.+.||||+|++++++.+|..++.
T Consensus 167 ~~~PE~~~~~~----------~~~~~~Dv~slG~~l~~l~~g~~~~~ 203 (288)
T cd07833 167 YRAPELLVGDT----------NYGKPVDVWAIGCIMAELLDGEPLFP 203 (288)
T ss_pred CcCCchhcCCC----------CcCchhhHHHHHHHHHHHHhCCCCCC
Confidence 78888864221 12345799999999999998876664
No 424
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.77 E-value=3.2e-07 Score=95.45 Aligned_cols=184 Identities=14% Similarity=0.096 Sum_probs=125.6
Q ss_pred eeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcC-CC
Q 001416 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SW 201 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~-~~ 201 (1081)
..++.|++.+..++++-+++.+...+...+....+...+.|.-++...+|. ..+.+.+.+|++|+.+..||++ .+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~----~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS----DKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc----cCCCceEEecCCCceEEEEEecCCc
Confidence 356778898887777777777775555555556666788899999999995 3455789999999999999998 44
Q ss_pred eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCC-CCcccccccceeecccCCcEEEEEEeeecCCCCE
Q 001416 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1081)
Q Consensus 202 ~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~-~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~ 280 (1081)
+.+..-..-|...|.++. ..+|.+.++++|+.|-.|++||.++ ++.+.. ..-.++|+.+.++|. ....
T Consensus 200 ~~i~~n~kvH~~GV~SI~--ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~~p~--~~~~ 268 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIY--SSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKHHPE--IFHR 268 (339)
T ss_pred ceeeecceeeecceEEEe--cCCCCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEEecch--hhhH
Confidence 455442236999999997 4788899999999999999999984 443332 223489999999993 3333
Q ss_pred EEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEee
Q 001416 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1081)
Q Consensus 281 Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~ 322 (1081)
+..++--+-.+|-+.+.+...... .......|.+-+....|
T Consensus 269 lL~~CMh~G~ki~~~~~~~~e~~~-~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 269 LLAACMHNGAKILDSSDKVLEFQI-VLPSDKIHDSLCYGGDW 309 (339)
T ss_pred HHHHHHhcCceEEEecccccchhe-eeeccccccceeecccc
Confidence 333333334567776544322000 01123455555555555
No 425
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=98.76 E-value=9.4e-11 Score=133.31 Aligned_cols=168 Identities=7% Similarity=-0.068 Sum_probs=108.2
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|..+++|.+..+... -......|.+.+.-. +|.+++.+. ..+.++|+|||+. |+|.+.+.. ...+.+..
T Consensus 20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~-~~L~~~l~~-~~~~~~~~ 97 (321)
T cd05591 20 DEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG-GDLMFQIQR-SRKFDEPR 97 (321)
T ss_pred CCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC-CcHHHHHHH-cCCCCHHH
Confidence 445889888764321 111122233333322 688888776 4578999999998 888765543 12233322
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+.......... . .... -.
T Consensus 98 ~~~~--------~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~-~-~~~~--------gt 159 (321)
T cd05591 98 SRFY--------AAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT-T-TTFC--------GT 159 (321)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCcc-c-cccc--------cC
Confidence 2223 4578899999999888 9999999999999999999999986531110000 0 0000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... .-+.+.||||+|++++++++|..||.
T Consensus 160 ~~y~aPE~~~~~-----------~~~~~~DvwslG~il~el~tg~~Pf~ 197 (321)
T cd05591 160 PDYIAPEILQEL-----------EYGPSVDWWALGVLMYEMMAGQPPFE 197 (321)
T ss_pred ccccCHHHHcCC-----------CCCCccceechhHHHHHHhcCCCCCC
Confidence 226788875321 12334799999999999999888875
No 426
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.76 E-value=2.3e-05 Score=89.91 Aligned_cols=252 Identities=12% Similarity=0.060 Sum_probs=148.0
Q ss_pred eeecccCCCCCeEEEEEec---C-cEEEEEecC--CCcccccccccCCCCeeEEEEeeccccCCCCEEEEEE-CCCeEEE
Q 001416 123 FASPPPSTKGRHFLVICCV---N-KAIFLDLVT--MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRV 195 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~---d-~~i~wd~~t--~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs-~Dg~I~l 195 (1081)
...++++|+++.+.++... . .+..|++.. ++...+............+++ +|++++++++. .+|.|.+
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~-----~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV-----DPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE-----CTTSSEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE-----ecCCCEEEEEEccCCeEEE
Confidence 3566788888866666552 2 344466554 344444444445667778888 78999999988 5899999
Q ss_pred EEcCC-CeEEEE---Eec---------ccccceEEEEEeeeCCCCCEEEEEeC-CCcEEEEEcCCCCc-ccccccceeec
Q 001416 196 LSMIS-WKLVRR---YTG---------GHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQD-SRELVPKLSLK 260 (1081)
Q Consensus 196 wd~~~-~~~~~~---~~~---------~h~~~V~~l~w~~~s~d~~~l~sgs~-Dg~V~vWd~~~~~~-~~~~~~~~~l~ 260 (1081)
+++.. +..... +.. .......++. ++|+++++++... ...|.+|+++.... +.. .....+
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~---~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~- 188 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV---FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKV- 188 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE---E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEEC-
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEE---ECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eecccc-
Confidence 99976 443332 210 0123345565 6999998887653 45799999977652 211 111122
Q ss_pred ccCCcEEEEEEeeecCCCCEEEEEE-CCCeEEEEECC--CCc--eeeEecCCCccccCCCCeEEEeecCCCCEEEEE--C
Q 001416 261 AHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTV--SFK--ELRRIKPVPKLACHSVASWCHPRAPNLDILTCV--K 333 (1081)
Q Consensus 261 ~h~~~V~~v~fsp~~~~~~~Lvsgs-~Dg~V~iWDl~--t~~--~~~~~~~~~~~~~h~~~v~~v~~spd~~lls~s--~ 333 (1081)
....+-..+.|+| +++++.... .+++|.++++. +++ .++.+.....-.........+.++|||++|-.+ .
T Consensus 189 ~~G~GPRh~~f~p---dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 189 PPGSGPRHLAFSP---DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp STTSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred ccCCCCcEEEEcC---CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 2346678999999 777775554 58899999998 332 333332221111112267789999999977333 2
Q ss_pred Cc--eEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 334 DS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 334 D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
++ .+|+++..+.. ...+..+...+. .-..++++|++..++++.-.++.| .+|++
T Consensus 266 ~~sI~vf~~d~~~g~-----------l~~~~~~~~~G~-~Pr~~~~s~~g~~l~Va~~~s~~v-~vf~~ 321 (345)
T PF10282_consen 266 SNSISVFDLDPATGT-----------LTLVQTVPTGGK-FPRHFAFSPDGRYLYVANQDSNTV-SVFDI 321 (345)
T ss_dssp TTEEEEEEECTTTTT-----------EEEEEEEEESSS-SEEEEEE-TTSSEEEEEETTTTEE-EEEEE
T ss_pred CCEEEEEEEecCCCc-----------eEEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCeE-EEEEE
Confidence 33 57888532111 011122322233 578899999977777777677775 67764
No 427
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=98.76 E-value=1e-10 Score=127.83 Aligned_cols=218 Identities=7% Similarity=-0.065 Sum_probs=138.7
Q ss_pred CCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc---cceeeE
Q 001416 664 AAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA---TGAVWH 733 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~---~~~~w~ 733 (1081)
+..+++|.++-... +...++..|.+.++-.+|.|++.+. ....++|++||+. ++|.+.+.+.. ..+.+.
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~ 103 (258)
T cd08215 25 GKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADG-GDLSQKIKKQKKEGKPFPEE 103 (258)
T ss_pred CcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCC-CcHHHHHHHhhccCCCcCHH
Confidence 44578887765433 2222344556666666789988877 4788999999998 88887665421 223333
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..+..|+.|||...+ ||.++++|++++.+..+|++|||+............ ... .
T Consensus 104 ~~~~i--------~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~--~~~--------~ 165 (258)
T cd08215 104 QILDW--------FVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAK--TVV--------G 165 (258)
T ss_pred HHHHH--------HHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCcceec--cee--------e
Confidence 33333 5578899999999998 999999999999999999999998876432210000 000 1
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
...|.|||..... ..+.+.||||+|+++++++.|..|+...... ++.. .....
T Consensus 166 ~~~y~~pe~~~~~-----------~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~--~~~~-------~~~~~------- 218 (258)
T cd08215 166 TPYYLSPELCQNK-----------PYNYKSDIWSLGCVLYELCTLKHPFEGENLL--ELAL-------KILKG------- 218 (258)
T ss_pred eecccChhHhccC-----------CCCccccHHHHHHHHHHHHcCCCCCCCCcHH--HHHH-------HHhcC-------
Confidence 1226777764321 1234479999999999998887776422111 0000 00000
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
. ..+ +...+.....+++++|+..+|..||++..+.
T Consensus 219 ~----~~~-----~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll 253 (258)
T cd08215 219 Q----YPP-----IPSQYSSELRNLVSSLLQKDPEERPSIAQIL 253 (258)
T ss_pred C----CCC-----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 0 000 1113345567899999999999999998864
No 428
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=98.76 E-value=6.5e-11 Score=134.72 Aligned_cols=169 Identities=5% Similarity=-0.143 Sum_probs=109.9
Q ss_pred CCCCccEEEEeeccccccC---CCCCCcc-eeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 663 EAAPQNFQLYSWETFQPVG---GLLPQPE-WTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~---~~~~~~k-~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
.|+.+++|.+..+...-.. ++..|.. .+.-..|.|++.+. ....++|+|||+. |+|.+.+... ..+.+.
T Consensus 19 ~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~-~~~~~~ 96 (323)
T cd05575 19 DGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG-GELFFHLQRE-RSFPEP 96 (323)
T ss_pred CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC-CCHHHHHHhc-CCCCHH
Confidence 4566899998875432111 1222221 13445788888876 4578999999998 8887665432 122222
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ......
T Consensus 97 ~~~~~--------~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~gt~------ 160 (323)
T cd05575 97 RARFY--------AAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTS--TFCGTP------ 160 (323)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccc--cccCCh------
Confidence 11122 4578899999999988 999999999999999999999998643111000000 000111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+.... ..+.+.||||+|++++++++|..||.
T Consensus 161 --~y~aPE~~~~~-----------~~~~~~DvwslG~il~ell~g~~pf~ 197 (323)
T cd05575 161 --EYLAPEVLRKQ-----------PYDRTVDWWCLGAVLYEMLYGLPPFY 197 (323)
T ss_pred --hhcChhhhcCC-----------CCCccccccccchhhhhhhcCCCCCC
Confidence 26788875321 12345799999999999999988875
No 429
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=98.76 E-value=9.8e-11 Score=130.09 Aligned_cols=217 Identities=8% Similarity=-0.017 Sum_probs=138.8
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
+..+++|.++-... .....+..|++.+.-.+|.|++.+. .+..++|+|||+. ++|.+.+.+. .+.+.....
T Consensus 29 ~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~l~~~i~~~--~~~~~~~~~ 105 (277)
T cd06641 29 QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGG-GSALDLLEPG--PLDETQIAT 105 (277)
T ss_pred CcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCC-CcHHHHHhcC--CCCHHHHHH
Confidence 44578887764332 2222344566666777899999887 4678999999998 8888776542 233333333
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ |+.++++|+++++.-.++++|||+...-........ . . ....++
T Consensus 106 ~--------~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~-----~-~----~~~~~y 167 (277)
T cd06641 106 I--------LREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRN-----T-F----VGTPFW 167 (277)
T ss_pred H--------HHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhc-----c-c----cCCccc
Confidence 3 5677889999999988 999999999999999999999997653211110000 0 0 012236
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
.+||..... ....+.|+||+|++++++++|..|+.. +.+.... .. ....
T Consensus 168 ~~PE~~~~~-----------~~~~~~Dv~slG~~l~~l~~g~~p~~~--~~~~~~~-----~~--~~~~----------- 216 (277)
T cd06641 168 MAPEVIKQS-----------AYDSKADIWSLGITAIELAKGEPPHSE--LHPMKVL-----FL--IPKN----------- 216 (277)
T ss_pred cChhhhccC-----------CCCchhhHHHHHHHHHHHHcCCCCCCc--cchHHHH-----HH--HhcC-----------
Confidence 677765321 122347999999999999988777642 1100000 00 0000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..+.+...+.....+++..|+..+|..||.+..+.+
T Consensus 217 -----~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~ 252 (277)
T cd06641 217 -----NPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK 252 (277)
T ss_pred -----CCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 001111123455678999999999999999998876
No 430
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=98.76 E-value=8.2e-11 Score=130.70 Aligned_cols=222 Identities=7% Similarity=-0.064 Sum_probs=131.1
Q ss_pred CccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc------ceeeE
Q 001416 666 PQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT------GAVWH 733 (1081)
Q Consensus 666 ~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~------~~~w~ 733 (1081)
.+++|.+.-.... .......|+..++-.+|.|++.+. ....++|+||++. |+|.+.+..... .+.|.
T Consensus 38 ~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g-~~L~~~i~~~~~~~~~~~~~~~~ 116 (277)
T cd05036 38 QVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAG-GDLKSFLRENRPRPERPSSLTMK 116 (277)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCC-CCHHHHHHHhCCCCCCCCCCCHH
Confidence 3667765422111 111234455556666789999888 3467899999998 899876543211 12332
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhh---hHhhhccceeeeeecccchhhhcccccCCcchhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQS---RAVAEHGELALIAVESSQTAAQDRIKLRPPMLQV 809 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~---rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~ 809 (1081)
....+ ...+.+|+.|||...+ |+.++++|++++. ...+|++|||+...-..............+..
T Consensus 117 ~~~~~--------~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~-- 186 (277)
T cd05036 117 DLLFC--------ARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIK-- 186 (277)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHh--
Confidence 22222 5578899999999888 9999999999986 46899999998653211000000000000111
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
+.|||.... ...+.+.||||+|++++|+++ |..||... +.++. .-.. ....
T Consensus 187 ------y~aPE~~~~-----------~~~~~~~DiwslG~il~el~~~g~~pf~~~--~~~~~-----~~~~-~~~~--- 238 (277)
T cd05036 187 ------WMPPEAFLD-----------GIFTSKTDVWSFGVLLWEIFSLGYMPYPGR--TNQEV-----MEFV-TGGG--- 238 (277)
T ss_pred ------hCCHHHHhc-----------CCcCchhHHHHHHHHHHHHHcCCCCCCCCC--CHHHH-----HHHH-HcCC---
Confidence 456776421 113345799999999999875 54454311 10000 0000 0000
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
. .+ ....++....++++.|+..+|..||.+..+.+.|+
T Consensus 239 ------~---~~-----~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 239 ------R---LD-----PPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred ------c---CC-----CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 0 00 01123456678999999999999999999988765
No 431
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=98.75 E-value=1.6e-10 Score=126.59 Aligned_cols=218 Identities=6% Similarity=-0.062 Sum_probs=136.2
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~~ 735 (1081)
|..+++|.+.-.... ....+..|++.++-.+|.|++.+. ....++|+|||+. ++|.+.+... ...+.+...
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~ 103 (256)
T cd08218 25 GKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEG-GDLYKKINAQRGVLFPEDQI 103 (256)
T ss_pred CCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCC-CcHHHHHHhccCCCCCHHHH
Confidence 455788877643321 122355566677778899999888 4578999999998 8887655321 111222211
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+..|+.|||...+ ||+++.+|++++.+..+|++|||+............ . ... ..
T Consensus 104 ~~~--------~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~-~-~~~--------~~ 165 (256)
T cd08218 104 LDW--------FVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELAR-T-CIG--------TP 165 (256)
T ss_pred HHH--------HHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhh-h-ccC--------Cc
Confidence 112 4467889999999888 999999999999999999999998865322110000 0 001 11
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|.|||.... .....+.|+||||++++++++|..|+...... +... ....+
T Consensus 166 ~~~~pe~~~~-----------~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~-~~~~--------~~~~~--------- 216 (256)
T cd08218 166 YYLSPEICEN-----------RPYNNKSDIWALGCVLYEMCTLKHAFEAGNMK-NLVL--------KIIRG--------- 216 (256)
T ss_pred cccCHHHhCC-----------CCCCCccchhHHHHHHHHHHcCCCCccCCCHH-HHHH--------HHhcC---------
Confidence 2667776421 11234579999999999999888776422111 0000 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
..+ .....+.....+++..||..+|..||....+.
T Consensus 217 ---~~~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl 251 (256)
T cd08218 217 ---SYP----PVSSHYSYDLRNLVSQLFKRNPRDRPSVNSIL 251 (256)
T ss_pred ---CCC----CCcccCCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence 000 00112344567899999999999999988874
No 432
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=98.75 E-value=3.6e-10 Score=127.80 Aligned_cols=232 Identities=11% Similarity=0.023 Sum_probs=151.9
Q ss_pred ccEEEEee-ccccccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeEec
Q 001416 667 QNFQLYSW-ETFQPVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVT 741 (1081)
Q Consensus 667 ~~i~~~~~-~~~~l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t 741 (1081)
||||.-.. .+.+=+-+++.|.-.|+--+|.|++++| -.-+-||+|.||. |-|..-|+.....|.-.--..+
T Consensus 421 VAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~~~-GELr~yLq~nk~sL~l~tL~ly--- 496 (974)
T KOG4257|consen 421 VAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELAPL-GELREYLQQNKDSLPLRTLTLY--- 496 (974)
T ss_pred eeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEecccc-hhHHHHHHhccccchHHHHHHH---
Confidence 56654433 2223244477888889999999999999 4568899999999 9888777654434433322333
Q ss_pred cCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCC
Q 001416 742 PTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAAS 820 (1081)
Q Consensus 742 ~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 820 (1081)
+..|...|.|||+... |--.--.|.+|.|-=-+|++||||...-..+. ||..- ..+|.-=|.|||
T Consensus 497 -----~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~-------yYkaS--~~kLPIKWmaPE 562 (974)
T KOG4257|consen 497 -----CYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDA-------YYKAS--RGKLPIKWMAPE 562 (974)
T ss_pred -----HHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccc-------hhhcc--ccccceeecCcc
Confidence 5677788999999888 99899999999999999999999986522211 11100 112222299999
Q ss_pred CCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccccc
Q 001416 821 VPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHAL 899 (1081)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ 899 (1081)
--.|..+ +.+.|||-||+.+.||.. |-.||.-.. ....+..+.++ -.+
T Consensus 563 SINfRrF-----------TtASDVWMFgVCmWEIl~lGvkPfqgvk---------NsDVI~~iEnG-----------eRl 611 (974)
T KOG4257|consen 563 SINFRRF-----------TTASDVWMFGVCMWEILSLGVKPFQGVK---------NSDVIGHIENG-----------ERL 611 (974)
T ss_pred ccchhcc-----------cchhhHHHHHHHHHHHHHhcCCcccccc---------ccceEEEecCC-----------CCC
Confidence 8655332 224689999999888863 334442110 11111112111 112
Q ss_pred CCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhcCcHHHHhccc
Q 001416 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLP 952 (1081)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~~~~~yA~~le 952 (1081)
|.++ .|+...-.+|..||..+|..||.|.+|+..|...--|+.++.-|
T Consensus 612 P~P~-----nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qeek~~~~E 659 (974)
T KOG4257|consen 612 PCPP-----NCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQEEKINSSE 659 (974)
T ss_pred CCCC-----CCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHHhhhhhHH
Confidence 2222 57776669999999999999999999999988763333344333
No 433
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=98.75 E-value=1.2e-10 Score=130.23 Aligned_cols=224 Identities=10% Similarity=-0.031 Sum_probs=133.9
Q ss_pred CCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc---------
Q 001416 665 APQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG--------- 729 (1081)
Q Consensus 665 ~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~--------- 729 (1081)
..+++|.+.-+. .+..+.+..|++.+.-.+|.|++.+. ..+.++|+|||+. |+|.+.+......
T Consensus 36 ~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~ 114 (288)
T cd05050 36 TMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAY-GDLNEFLRHRSPRAQCSLSHST 114 (288)
T ss_pred eeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCC-CCHHHHHHHcCccccccccccc
Confidence 447788765332 12223344566666667899998877 3578999999998 8887766531110
Q ss_pred ------------eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhh
Q 001416 730 ------------AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAA 796 (1081)
Q Consensus 730 ------------~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~ 796 (1081)
+.+.....+ +..+..|+.|||...+ |+.++++|++++..=.+|++|||+..........
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~~--------~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~ 186 (288)
T cd05050 115 SSARKCGLNPLPLSCTEQLCI--------AKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY 186 (288)
T ss_pred cccccccccccccCHHHHHHH--------HHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccccceecccCccc
Confidence 111111112 4567789999999888 9999999999999999999999986532111100
Q ss_pred hcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecC-CcceeeecCCCCCCCCCCC
Q 001416 797 QDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGG-GGVAVAVTRFPTEQKRPIG 875 (1081)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 875 (1081)
........++. +.|||... +...+.+.||||+|++++++++ |-.|+. ..+.++..
T Consensus 187 ~~~~~~~~~~~--------y~aPE~~~-----------~~~~~~~~Dv~slG~il~el~~~~~~p~~--~~~~~~~~--- 242 (288)
T cd05050 187 KASENDAIPIR--------WMPPESIF-----------YNRYTTESDVWAYGVVLWEIFSYGMQPYY--GMAHEEVI--- 242 (288)
T ss_pred cccCCCccChh--------hcCHHHHh-----------cCCCCchhHHHHHHHHHHHHHhCCCCCCC--CCCHHHHH---
Confidence 00000001111 45666431 1123345799999999999876 333442 11111000
Q ss_pred CcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHh
Q 001416 876 PLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLG 941 (1081)
Q Consensus 876 p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~ 941 (1081)
-.+.++.+ .+. .-.+.....+++..|+..+|..||.+..|.+.|++
T Consensus 243 ----~~~~~~~~-----------~~~-----~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~ 288 (288)
T cd05050 243 ----YYVRDGNV-----------LSC-----PDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR 288 (288)
T ss_pred ----HHHhcCCC-----------CCC-----CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence 00001100 000 00234456789999999999999999999998864
No 434
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=98.75 E-value=3.6e-11 Score=134.66 Aligned_cols=165 Identities=5% Similarity=-0.136 Sum_probs=113.1
Q ss_pred CCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|..+++|.++.+.. +-...+..|.+.++-.+|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.+...
T Consensus 26 ~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~-~~~~~~~~ 103 (291)
T cd05612 26 EHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPG-GELFSYLRNS-GRFSNSTG 103 (291)
T ss_pred CCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCC-CCHHHHHHHc-CCCCHHHH
Confidence 55689998875432 1222344566667777899998877 4678999999998 8888766542 12222222
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..++.|+.|||...+ |+.++++|++++..-.+|++|||+......... ..... .
T Consensus 104 ~~~--------~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~-----~~~gt--------~ 162 (291)
T cd05612 104 LFY--------ASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTW-----TLCGT--------P 162 (291)
T ss_pred HHH--------HHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCcc-----cccCC--------h
Confidence 223 4578899999999988 999999999999999999999998653211100 00001 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+... ...+.+.||||+|++++++++|..|+.
T Consensus 163 ~y~aPE~~~~-----------~~~~~~~DiwSlG~il~~l~~g~~pf~ 199 (291)
T cd05612 163 EYLAPEVIQS-----------KGHNKAVDWWALGILIYEMLVGYPPFF 199 (291)
T ss_pred hhcCHHHHcC-----------CCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 1667876532 112345799999999999999888774
No 435
>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co
Probab=98.75 E-value=1.3e-10 Score=129.29 Aligned_cols=168 Identities=8% Similarity=-0.125 Sum_probs=109.7
Q ss_pred CCCCccEEEEeeccccccCC------CCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccccee
Q 001416 663 EAAPQNFQLYSWETFQPVGG------LLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAV 731 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~------~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~ 731 (1081)
.|..+++|.++.+....... .....+.++=..|.+++.+. .+..++|+|||+. |+|.+.+.+. ..+.
T Consensus 18 ~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g-~~L~~~l~~~-~~l~ 95 (278)
T cd05606 18 TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNG-GDLHYHLSQH-GVFS 95 (278)
T ss_pred CCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCC-CcHHHHHHhc-CCCC
Confidence 35568999887754432111 01112233335678888765 4678999999998 8887766542 2233
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVV 810 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1081)
|.....+ +..+++|+.|||...+ |+.++.+|++++..+.+|++|||+.......... ......
T Consensus 96 ~~~~~~~--------~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~---- 159 (278)
T cd05606 96 EAEMRFY--------AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH----ASVGTH---- 159 (278)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCc----CcCCCc----
Confidence 3333333 5567889999999888 9999999999999999999999986421111000 001111
Q ss_pred hhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 811 RLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 811 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+... +...+.+.||||+|++++++++|..|+.
T Consensus 160 ----~y~aPE~~~~----------~~~~~~~~Di~s~G~~l~~l~~g~~p~~ 197 (278)
T cd05606 160 ----GYMAPEVLQK----------GVAYDSSADWFSLGCMLFKLLRGHSPFR 197 (278)
T ss_pred ----CCcCcHHhcC----------CCCCCcccchHhHHHHHHHHHhCCCCCC
Confidence 2678887531 1112234699999999999999888775
No 436
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=98.74 E-value=1.7e-10 Score=129.74 Aligned_cols=170 Identities=4% Similarity=-0.135 Sum_probs=110.5
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe----e-e----------eEEEEEecCccccccccccccc
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA----Y-Q----------HYIVISSLCPQYRYLGDVAIPY 726 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~----~-~----------~~~~v~~y~~~~gsl~d~~~~~ 726 (1081)
|..+++|.++..... ....+..|++.++=.+|.|++.+. . + ..++|++||+. .|.+.+.+.
T Consensus 32 ~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~--~l~~~l~~~ 109 (302)
T cd07864 32 GELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH--DLMGLLESG 109 (302)
T ss_pred CcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc--cHHHHHhcC
Confidence 455788887654321 111223355666667899999976 1 1 58899999985 555544442
Q ss_pred ccceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCc
Q 001416 727 ATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPP 805 (1081)
Q Consensus 727 ~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~ 805 (1081)
...+++.....+ +..+..|+.|||...+ |++++++|++++.++.+|++|||+.............. ....
T Consensus 110 ~~~~~~~~~~~i--------~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~-~~~~ 180 (302)
T cd07864 110 LVHFSEDHIKSF--------MKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTN-KVIT 180 (302)
T ss_pred CCCCCHHHHHHH--------HHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccccccCCccccccc-ceec
Confidence 334455444444 5678899999999999 99999999999999999999999876532211110000 0001
Q ss_pred chhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 806 MLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 806 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
. .|.|||+.... ...+.+.||||+|+++++++.|..|+.
T Consensus 181 ~--------~y~~PE~~~~~----------~~~~~~~Di~slG~~~~el~~g~~~~~ 219 (302)
T cd07864 181 L--------WYRPPELLLGE----------ERYGPAIDVWSCGCILGELFTKKPIFQ 219 (302)
T ss_pred c--------CccChHHhcCC----------CCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence 1 26778864211 011234799999999999998877765
No 437
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=98.74 E-value=6.1e-11 Score=129.90 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=140.5
Q ss_pred CCCCccEEEEeecccc-----ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceee
Q 001416 663 EAAPQNFQLYSWETFQ-----PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW 732 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~-----l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w 732 (1081)
.|+.+++|.+...... ..+++..|+..++-.+|.|++.+. ....++++||++. ++|.+.+.+. ..+++
T Consensus 24 ~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~-~~~~~ 101 (258)
T cd06632 24 DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPG-GSLAKLLKKY-GSFPE 101 (258)
T ss_pred CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCC-CcHHHHHHhc-CCCCH
Confidence 4566889988775532 334455566667777889988877 3578999999998 8888776542 22333
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..+.+|+.|||...+ ||.++.+|++++....+|++|||+............ . .
T Consensus 102 ~~~~~~--------~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~---~--------~ 162 (258)
T cd06632 102 PVIRLY--------TRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKS---F--------K 162 (258)
T ss_pred HHHHHH--------HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccccccc---c--------C
Confidence 333333 4567889999999998 999999999999999999999998775332210000 0 0
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEe
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
...+|.+||..-... ..+.+.|+||+|+++++++.|..|+.... +.+. ... ....
T Consensus 163 ~~~~y~~pe~~~~~~----------~~~~~~D~~slG~~l~~l~~g~~pf~~~~-~~~~------~~~--~~~~------ 217 (258)
T cd06632 163 GSPYWMAPEVIAQQG----------GYGLAADIWSLGCTVLEMATGKPPWSQLE-GVAA------VFK--IGRS------ 217 (258)
T ss_pred CCcceeCHHHhcCCC----------CCCchhhhHHHHHHHHHHHhCCCCcccCc-HHHH------HHH--HHhc------
Confidence 112367777642111 13345799999999999999888874221 1000 000 0000
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
...+.+.........++++.|+..+|..||....+.
T Consensus 218 ---------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 253 (258)
T cd06632 218 ---------KELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELL 253 (258)
T ss_pred ---------ccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence 000011112334556899999999999999887764
No 438
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=98.74 E-value=6.7e-11 Score=134.00 Aligned_cols=220 Identities=8% Similarity=-0.034 Sum_probs=140.2
Q ss_pred CCCCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 662 AEAAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 662 ~~~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
+.|..+++|.+++.+... ...+..|++.++-.+|.|++.+. ....++|+|||+ |+|.+.+......+.|.
T Consensus 44 ~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~--~~l~~~l~~~~~~l~~~ 121 (313)
T cd06633 44 HTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL--GSASDLLEVHKKPLQEV 121 (313)
T ss_pred CCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC--CCHHHHHHhcCCCCCHH
Confidence 345668999998865432 23355577777888899998887 356889999996 56766665433344444
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ ...+..++.|||...+ ||.++++|++++..-.+|++|||+........ ....
T Consensus 122 ~~~~~--------~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~------~~~~-------- 179 (313)
T cd06633 122 EIAAI--------THGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPAN------SFVG-------- 179 (313)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCCCC------Cccc--------
Confidence 43333 5678889999999988 99999999999998899999999764311110 0011
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
..+|.|||+..... +.....+.||||+|+++++++.|..|+...... ...+... ...
T Consensus 180 ~~~y~aPE~~~~~~--------~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~-------~~~~~~~-~~~------- 236 (313)
T cd06633 180 TPYWMAPEVILAMD--------EGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-------SALYHIA-QND------- 236 (313)
T ss_pred cccccChhhccccC--------CCCCCchhhHHHHHHHHHHHHhCCCCCCCCChH-------HHHHHHH-hcC-------
Confidence 11277888753110 111233479999999999999888776321100 0000000 000
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
.+............+++..|+..+|..||....+.+
T Consensus 237 ---------~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~ 272 (313)
T cd06633 237 ---------SPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLR 272 (313)
T ss_pred ---------CCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000001112234568999999999999999888764
No 439
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=98.74 E-value=6.5e-11 Score=130.06 Aligned_cols=219 Identities=5% Similarity=-0.085 Sum_probs=132.6
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcce-eeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPEW-TAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k~-v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|..+++|.+....... .++...|... ..-.+|.|++.+. ....++|+|||+. ++|.+.+... ..+....
T Consensus 21 ~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~~ 98 (260)
T cd05611 21 GDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG-GDCASLIKTL-GGLPEDW 98 (260)
T ss_pred CCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC-CCHHHHHHHc-CCCCHHH
Confidence 4568898886543221 1222222211 2233788988887 3568999999998 8998776431 1122221
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..+..||.|||...+ ||.++++|++++..-.+|++|||+......... ......
T Consensus 99 ~~~i--------~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~------ 158 (260)
T cd05611 99 AKQY--------IAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKK------FVGTPD------ 158 (260)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceecccccc------CCCCcC------
Confidence 1222 4567889999999988 999999999999999999999998754221100 001111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
|.|||..... ..+.+.||||+|++++++++|..|+...... + .+. ......
T Consensus 159 --y~~pe~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~------~~~-~~~~~~------- 209 (260)
T cd05611 159 --YLAPETILGV-----------GDDKMSDWWSLGCVIFEFLFGYPPFHAETPD--A------VFD-NILSRR------- 209 (260)
T ss_pred --ccChhhhcCC-----------CCcchhhhHHHHHHHHHHHHCCCCCCCCCHH--H------HHH-HHHhcc-------
Confidence 6677765321 1234579999999999999888777421110 0 000 000000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
... .+.....+.....++++.|+..+|..||....+...|
T Consensus 210 -----~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l 249 (260)
T cd05611 210 -----INW-PEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIK 249 (260)
T ss_pred -----cCC-CCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence 000 0011113455667999999999999999665554443
No 440
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=98.74 E-value=1.1e-10 Score=128.85 Aligned_cols=170 Identities=8% Similarity=-0.046 Sum_probs=108.9
Q ss_pred CCCccEEEEeecccc-----ccCCCCCCcceeeecccCceEEEee-------eeEEEEEecCccccccccccccccccee
Q 001416 664 AAPQNFQLYSWETFQ-----PVGGLLPQPEWTAWDQTVEYCAFAY-------QHYIVISSLCPQYRYLGDVAIPYATGAV 731 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-----l~~~~~~~~k~v~w~~~~~~~~~~~-------~~~~~v~~y~~~~gsl~d~~~~~~~~~~ 731 (1081)
|..++||.++.+... .+..+..|+..+.=.+|.|++.+.. ...+++++|++. |+|.+.+.+.. .+.
T Consensus 27 ~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~-~~L~~~l~~~~-~~~ 104 (265)
T cd06652 27 GRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPG-GSIKDQLKSYG-ALT 104 (265)
T ss_pred CcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCC-CcHHHHHHHcC-CCC
Confidence 445788876543211 1223334555566667999988771 135689999998 88887664421 122
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccch-hhhcccccCCcchhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQT-AAQDRIKLRPPMLQV 809 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~-~~~~~~~~~~~~~~~ 809 (1081)
+.....+ +..+..|+.|||...+ ||.++++|++++....+|++|||+........ ..........
T Consensus 105 ~~~~~~~--------~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~----- 171 (265)
T cd06652 105 ENVTRKY--------TRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTG----- 171 (265)
T ss_pred HHHHHHH--------HHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCC-----
Confidence 2211222 4567889999999998 99999999999999999999999875321100 0000000001
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.-.|+|||+.... ..+.+.||||||+++++++.|..|+.
T Consensus 172 ---~~~y~aPE~~~~~-----------~~~~~~Dv~slG~il~el~~g~~p~~ 210 (265)
T cd06652 172 ---TPYWMSPEVISGE-----------GYGRKADIWSVGCTVVEMLTEKPPWA 210 (265)
T ss_pred ---CccccChhhhcCC-----------CCCcchhHHHHHHHHHHHhhCCCCCC
Confidence 1127888875321 12345799999999999999888774
No 441
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=3.2e-07 Score=97.17 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=112.9
Q ss_pred eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccc--cceeecccCCcEEEEEEeeecCCCC
Q 001416 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELV--PKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 202 ~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~--~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
.+.+.+..+|.--|+++. ++.|+..++| +.|-.|.+|++.-......+. ....++.-+.-|++..|+| ...+
T Consensus 154 ~prRv~aNaHtyhiNSIS---~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp--~~cn 227 (433)
T KOG1354|consen 154 SPRRVYANAHTYHINSIS---VNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP--HHCN 227 (433)
T ss_pred eeeeeccccceeEeeeee---ecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH--hHcc
Confidence 355566668999999998 6888888886 458899999987544322111 0011222335689999999 4778
Q ss_pred EEEEEECCCeEEEEECCCCcee----eEecCCCcc------ccCCCCeEEEeecCCCCEEEEEC--CceEEEeccCCccc
Q 001416 280 QLITIGADKTLAIWDTVSFKEL----RRIKPVPKL------ACHSVASWCHPRAPNLDILTCVK--DSHIWAIEHPTYSA 347 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~----~~~~~~~~~------~~h~~~v~~v~~spd~~lls~s~--D~~IWdi~~~~~~~ 347 (1081)
+++-.+..|+|++-|++....- +.+...... ..--..|..+.|+++|+++.+-. ..+|||++......
T Consensus 228 ~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 228 VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPV 307 (433)
T ss_pred EEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcc
Confidence 9999999999999999842211 011110111 11122677899999999875432 24799997642211
Q ss_pred ccccccccCCCCCCeEEccCCCccEEEEEEeCCCCeEEEEEECCCeEEEEeCC
Q 001416 348 LTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1081)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~~~~llatgs~dG~Il~iwd~ 400 (1081)
...++.+.-..+.-..+....--.-.-++|+.+ +..+.||+..... ++++.
T Consensus 308 ~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~-~~~v~TGsy~n~f-rvf~~ 358 (433)
T KOG1354|consen 308 ETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN-DSYVMTGSYNNVF-RVFNL 358 (433)
T ss_pred eEEeehHhHHHHHHHHhhccchhheeEEEEcCC-cceEecccccceE-EEecC
Confidence 111111100000000011111111234688887 5667999999996 89883
No 442
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=8.3e-06 Score=92.16 Aligned_cols=320 Identities=12% Similarity=0.074 Sum_probs=183.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCccceEEe--ccCCCeEEEeecCCCCCceeeecCCceEE
Q 001416 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1081)
Q Consensus 12 ~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~d~~~~~~~~l~g~~V~~ 89 (1081)
..++..+++++|++++.+ .++.++|.+..++..+.+.... ....+ +|.+.+|.+=. .- .+-..+..
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e--~~----~i~~~~~~-- 102 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWE--PW----AIYGPKNA-- 102 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc---eeeeeeeccccccccccc--cc----ccccCCCC--
Confidence 446788899999877666 6678999999888655444422 22222 77777776511 00 00000000
Q ss_pred EEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCCCeeE
Q 001416 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVC 169 (1081)
Q Consensus 90 v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~~I~~ 169 (1081)
..-.+++|+..++.. ... .......+ ++..|++|.. +.+=-..+.+.+|+.... .......|...|+.
T Consensus 103 ---~~pn~~v~~vet~~~-~s~--~q~k~Q~~--W~~qfs~dEs-l~arlv~nev~f~~~~~f---~~~~~kl~~~~i~~ 170 (566)
T KOG2315|consen 103 ---SNPNVLVYNVETGVQ-RSQ--IQKKMQNG--WVPQFSIDES-LAARLVSNEVQFYDLGSF---KTIQHKLSVSGITM 170 (566)
T ss_pred ---CCCceeeeeecccee-hhh--eehhhhcC--cccccccchh-hhhhhhcceEEEEecCCc---cceeeeeeccceee
Confidence 124567899888432 111 11111122 5888999875 555555666777887763 23345667888999
Q ss_pred EEEeeccccCCCCEEEEE-----ECCCeEEEEEcCCC---eEE--EEEecccccceEEEEEeeeCCCCCEEEEEeC--C-
Q 001416 170 MEFLSRSAVGDVPLVAFG-----SSDGVIRVLSMISW---KLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGS--D- 236 (1081)
Q Consensus 170 ia~~p~~~sp~~~~l~sg-----s~Dg~I~lwd~~~~---~~~--~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~--D- 236 (1081)
++++| .|....+|+= +.-+.|+||..... +.+ ++|. ..+. ..+.| +.....+|+.++. |
T Consensus 171 f~lSp---gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadk-vqm~W--N~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 171 LSLSP---GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADK-VQMKW--NKLGTALLVLASTDVDK 242 (566)
T ss_pred EEecC---CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccce-eEEEe--ccCCceEEEEEEEeecC
Confidence 99966 3445555542 34567999987521 111 1221 1122 23445 2333334443333 2
Q ss_pred --------CcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEE--ECCCeEEEEECCCCceeeEecC
Q 001416 237 --------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI--GADKTLAIWDTVSFKELRRIKP 306 (1081)
Q Consensus 237 --------g~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsg--s~Dg~V~iWDl~t~~~~~~~~~ 306 (1081)
.++++.+++...+ ...+. -+++|.++.|+| ++.-++.+ -.--.+.|+|++ ++++..+
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~------~V~L~-k~GPVhdv~W~~---s~~EF~VvyGfMPAkvtifnlr-~~~v~df-- 309 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESV------SVPLL-KEGPVHDVTWSP---SGREFAVVYGFMPAKVTIFNLR-GKPVFDF-- 309 (566)
T ss_pred CCccccccceEEEEEecCceE------EEecC-CCCCceEEEECC---CCCEEEEEEecccceEEEEcCC-CCEeEeC--
Confidence 3677777773221 12222 468999999999 66555443 346789999986 4555443
Q ss_pred CCccccCCCCeEEEeecCCCCEE-EEECC-----ceEEEeccCCcccccccccccCCCCCCeEEccCCCccEEEEEEeCC
Q 001416 307 VPKLACHSVASWCHPRAPNLDIL-TCVKD-----SHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1081)
Q Consensus 307 ~~~~~~h~~~v~~v~~spd~~ll-s~s~D-----~~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~l~~sp~ 380 (1081)
..++-+++-|+|.|.+| .+|.+ ..|||+.+ .+.+..+... .-+-..|+|+
T Consensus 310 ------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---------------~K~i~~~~a~---~tt~~eW~Pd 365 (566)
T KOG2315|consen 310 ------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---------------RKLIAKFKAA---NTTVFEWSPD 365 (566)
T ss_pred ------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc---------------hhhccccccC---CceEEEEcCC
Confidence 34455689999999976 45543 36999985 2222233222 4456799999
Q ss_pred CCeEEEEEEC-----CCeEEEEeCCC
Q 001416 381 QPHLVATGTN-----VGVIISEFDPR 401 (1081)
Q Consensus 381 ~~~llatgs~-----dG~Il~iwd~~ 401 (1081)
|.+++.+.+. |+.+ +||++.
T Consensus 366 Ge~flTATTaPRlrvdNg~-Kiwhyt 390 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGI-KIWHYT 390 (566)
T ss_pred CcEEEEEeccccEEecCCe-EEEEec
Confidence 7666444433 4554 788855
No 443
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=98.74 E-value=1.9e-10 Score=127.88 Aligned_cols=220 Identities=8% Similarity=-0.043 Sum_probs=134.4
Q ss_pred CCCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 663 EAAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
.++.+++|.+.++. .+..+++..|++.+.-.+|.|++.+. ....++|+|||+. |+|..... +.+....
T Consensus 25 ~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~-----~~~~~~~ 98 (279)
T cd06619 25 TRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDG-GSLDVYRK-----IPEHVLG 98 (279)
T ss_pred CCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCC-CChHHhhc-----CCHHHHH
Confidence 35568898887652 22223344566666677899999988 4568899999998 87753211 1111111
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..++.|+.|||...+ |+.++++|++++..-.+|++|||+...-...... ...... .
T Consensus 99 ~~--------~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~--------~ 158 (279)
T cd06619 99 RI--------AVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAK----TYVGTN--------A 158 (279)
T ss_pred HH--------HHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccccc----CCCCCh--------h
Confidence 12 4568889999999988 9999999999999999999999987532111100 011111 2
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
|.|||.... ...+.+.||||+|++++++++|..|+....-. +... .+. ..... ..+
T Consensus 159 y~aPE~~~~-----------~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~-~~~~--~~~---~~~~~---~~~---- 214 (279)
T cd06619 159 YMAPERISG-----------EQYGIHSDVWSLGISFMELALGRFPYPQIQKN-QGSL--MPL---QLLQC---IVD---- 214 (279)
T ss_pred hcCceeecC-----------CCCCCcchHHHHHHHHHHHHhCCCCchhhccc-cccc--chH---HHHHH---Hhc----
Confidence 667887532 11334579999999999999988887421111 0000 000 00000 000
Q ss_pred ccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 896 AHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
+.........-.....+++..|+..+|..||+...+.
T Consensus 215 ----~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil 251 (279)
T cd06619 215 ----EDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLM 251 (279)
T ss_pred ----cCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence 0000000111233567899999999999999988774
No 444
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=98.74 E-value=6e-11 Score=132.50 Aligned_cols=169 Identities=5% Similarity=-0.089 Sum_probs=111.6
Q ss_pred CCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
+..+++|.+..... .....+..|++.++-.+|.|++.+. ....++|+|||+. +.+..+... ...+.+....
T Consensus 26 ~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~-~~~~~~~~~~ 103 (287)
T cd07848 26 KEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEK-NMLELLEEM-PNGVPPEKVR 103 (287)
T ss_pred CcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCC-CHHHHHHhc-CCCCCHHHHH
Confidence 45588888865432 1222344577777778899998876 4578999999998 766543321 1122222222
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..+..|+.|||...+ |+.+|++|++++..-.+|++|||+............ ...... ..
T Consensus 104 ~~--------~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~-~~~~~~--------~~ 166 (287)
T cd07848 104 SY--------IYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANY-TEYVAT--------RW 166 (287)
T ss_pred HH--------HHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccc-cccccc--------cc
Confidence 23 4567899999999888 999999999999999999999998764221110000 000011 12
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||+... ...+.+.||||+|++++|++.|..||.
T Consensus 167 y~aPE~~~~-----------~~~~~~~DiwslGvil~el~~g~~pf~ 202 (287)
T cd07848 167 YRSPELLLG-----------APYGKAVDMWSVGCILGELSDGQPLFP 202 (287)
T ss_pred cCCcHHHcC-----------CCCCCchhHHhHHHHHHHHHhCCCCCC
Confidence 778887531 112345799999999999999887775
No 445
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=98.73 E-value=7.9e-11 Score=133.73 Aligned_cols=212 Identities=5% Similarity=-0.111 Sum_probs=129.2
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
+..+++|.+......- ......|.+.+.=. +|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.+..
T Consensus 20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~-~~l~~~~ 97 (318)
T cd05570 20 DELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG-GDLMFHIQRS-GRFDEPR 97 (318)
T ss_pred CCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC-CCHHHHHHHc-CCCCHHH
Confidence 4457888887543211 11111222222212 688888876 4578999999998 8887655431 2333333
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|.+|++++....+|++|||+............ ... -.
T Consensus 98 ~~~~--------~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~--------g~ 159 (318)
T cd05570 98 ARFY--------AAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTS--TFC--------GT 159 (318)
T ss_pred HHHH--------HHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCccc--cee--------cC
Confidence 3333 5578899999999999 999999999999999999999998653111100000 000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
..|.|||+.... ..+.+.||||+|++++++++|..||...... +.. . .....
T Consensus 160 ~~y~aPE~~~~~-----------~~~~~~DiwslGvil~~l~~G~~pf~~~~~~--~~~------~-~i~~~-------- 211 (318)
T cd05570 160 PDYIAPEILSYQ-----------PYGPAVDWWALGVLLYEMLAGQSPFEGDDED--ELF------Q-SILED-------- 211 (318)
T ss_pred ccccCHHHhcCC-----------CCCcchhhhhHHHHHHHHhhCCCCCCCCCHH--HHH------H-HHHcC--------
Confidence 227788876321 1234579999999999999988887421110 000 0 00000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHH 932 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 932 (1081)
.+ .+...+.....++++.|+..+|..||..
T Consensus 212 ------~~---~~~~~~~~~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 212 ------EV---RYPRWLSKEAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred ------CC---CCCCcCCHHHHHHHHHHccCCHHHcCCC
Confidence 00 0001233455799999999999999987
No 446
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=98.73 E-value=1.6e-10 Score=131.70 Aligned_cols=167 Identities=8% Similarity=-0.073 Sum_probs=109.5
Q ss_pred CCCccEEEEeeccccc---cCCCCCC---cceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceee
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQ---PEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW 732 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~---~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w 732 (1081)
|..++||.+..+...- ..++..| ++.+.-..|.|++.+. ..+.++|+|||+. |+|...+.. ..+.+
T Consensus 24 ~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~-~~L~~~~~~--~~l~~ 100 (324)
T cd05589 24 GELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAG-GDLMMHIHT--DVFSE 100 (324)
T ss_pred CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCC-CcHHHHhhc--CCCCH
Confidence 4558999887643211 1112222 2334566799998877 4678999999998 887755432 22333
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..+..|+.|||...+ |+.+|++|++++....+|++|||+........... ..+..
T Consensus 101 ~~~~~~--------~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~--~~~~g------- 163 (324)
T cd05589 101 PRAVFY--------AACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRT--STFCG------- 163 (324)
T ss_pred HHHHHH--------HHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcc--ccccc-------
Confidence 333333 5578889999999999 99999999999999999999999754211100000 00001
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
...|.|||+... ..-+.+.||||+|+++++++.|..|+.
T Consensus 164 -~~~y~aPE~~~~-----------~~~~~~~DiwslG~il~el~~G~~pf~ 202 (324)
T cd05589 164 -TPEFLAPEVLTE-----------TSYTRAVDWWGLGVLIYEMLVGESPFP 202 (324)
T ss_pred -CccccCHhHhcC-----------CCCCcccchhhHHHHHHHHHhCCCCCC
Confidence 112678887532 112345799999999999999888875
No 447
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=98.73 E-value=9.9e-11 Score=132.28 Aligned_cols=165 Identities=8% Similarity=-0.081 Sum_probs=110.9
Q ss_pred CCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 665 APQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 665 ~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
..+++|.+.-+.. ....++..|++.+.-.+|.|++.+. ....++|+||++. ++|.+++.+. ..+.+.....+
T Consensus 27 ~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~-~~L~~~l~~~-~~~~~~~~~~~ 104 (308)
T cd06615 27 LIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDG-GSLDQVLKKA-GRIPENILGKI 104 (308)
T ss_pred eEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCC-CcHHHHHHhc-CCCCHHHHHHH
Confidence 4467777654321 1222355577777778899998887 5788999999998 8998877542 22222222222
Q ss_pred EeccCceEEEeeeCCccccchh-hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVE-TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s-~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+..+++||.|||.. .+ |+.+++.|++++..-.+|++|||+......... ........ |
T Consensus 105 --------~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~--------~ 164 (308)
T cd06615 105 --------SIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA----NSFVGTRS--------Y 164 (308)
T ss_pred --------HHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccccccc----ccCCCCcC--------c
Confidence 45678899999974 45 999999999999999999999997643211000 00111122 7
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|||+... ...+.+.||||||++++++++|..|+.
T Consensus 165 ~aPE~~~~-----------~~~~~~~DiwslG~~l~~l~~g~~p~~ 199 (308)
T cd06615 165 MSPERLQG-----------THYTVQSDIWSLGLSLVEMAIGRYPIP 199 (308)
T ss_pred cChhHhcC-----------CCCCccchHHHHHHHHHHHHhCCCCCC
Confidence 78887531 112334799999999999999988874
No 448
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=98.73 E-value=1.2e-10 Score=127.50 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=138.8
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc-eeeEeee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG-AVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~-~~w~~~~ 736 (1081)
+..+++|.+.-.... ....+..|++.++-..|.|++.+. ....++|++||+. ++|.+.+...... +.+....
T Consensus 28 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~-~~l~~~~~~~~~~~~~~~~~~ 106 (258)
T smart00219 28 EVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEG-GDLLDYLRKNRPKELSLSDLL 106 (258)
T ss_pred CceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCC-CCHHHHHHhhhhccCCHHHHH
Confidence 355788877544322 233455566677777899999988 3578999999998 8888776542221 4444333
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..++.|+.|||...+ |+.++++|+++++.-.+|++|||+............. ....+ ..
T Consensus 107 ~~--------~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~--------~~ 169 (258)
T smart00219 107 SF--------ALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKK-GGKLP--------IR 169 (258)
T ss_pred HH--------HHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccccccc-cCCCc--------cc
Confidence 33 5567789999999998 9999999999999999999999987653221000000 00001 12
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
|.|||.... ...+.++||||+|+++++++.+| .|+.. .+... ++. .+...
T Consensus 170 y~~Pe~~~~-----------~~~~~~~Di~slG~i~~~l~~~g~~p~~~--~~~~~------~~~-~~~~~--------- 220 (258)
T smart00219 170 WMAPESLKD-----------GKFTSKSDVWSFGVLLWEIFTLGESPYPG--MSNEE------VLE-YLKKG--------- 220 (258)
T ss_pred ccChHHhcc-----------CCCCcchhHHHHHHHHHHHHhCCCCCCCC--CCHHH------HHH-HHhcC---------
Confidence 667776421 12344589999999988887643 33321 11000 000 00000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFM 939 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l 939 (1081)
...+. .-.+.....++++.|+..+|..||+..++.+.|
T Consensus 221 --~~~~~-----~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 221 --YRLPK-----PENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred --CCCCC-----CCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 00000 012455667899999999999999999887653
No 449
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=98.72 E-value=8.1e-11 Score=129.41 Aligned_cols=220 Identities=9% Similarity=-0.054 Sum_probs=141.2
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.+..... .....+..|++.+.-.+|.|++.+. ....++|++|++. ++|.+.+.+. ..+.......
T Consensus 26 ~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~l~~~~~~~ 103 (264)
T cd06623 26 GKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDG-GSLADLLKKV-GKIPEPVLAY 103 (264)
T ss_pred CcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCC-CcHHHHHHHc-CCCCHHHHHH
Confidence 45578888877654 2334456666666667799999987 4578999999998 8998876542 2222222222
Q ss_pred eEeccCceEEEeeeCCccccch-hhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDV-ETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~-s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
+ +..+++|+.|||. ..+ ||.++.+|++++....++++|||+...-........ ... ....
T Consensus 104 ~--------~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~--~~~--------~~~~ 165 (264)
T cd06623 104 I--------ARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCN--TFV--------GTVT 165 (264)
T ss_pred H--------HHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCccc--cee--------eccc
Confidence 3 5578889999999 777 999999999999999999999998764222111100 000 1112
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCC-CCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRF-PTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
|.|||..... ..+.++||||+|++++++++|..|+....- +..+. .......
T Consensus 166 y~~pE~~~~~-----------~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~-------~~~~~~~--------- 218 (264)
T cd06623 166 YMSPERIQGE-----------SYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFEL-------MQAICDG--------- 218 (264)
T ss_pred ccCHhhhCCC-----------CCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHH-------HHHHhcC---------
Confidence 6677764321 234558999999999999998887753210 00000 0000000
Q ss_pred cccccCCCCccccee-cccccccHHHHHhhhcccCcccHHHHHH
Q 001416 895 CAHALSLSHPGIRCR-CLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
...+ +... ......++++.|+..+|..||.+..+..
T Consensus 219 --~~~~-----~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~ 255 (264)
T cd06623 219 --PPPS-----LPAEEFSPEFRDFISACLQKDPKKRPSAAELLQ 255 (264)
T ss_pred --CCCC-----CCcccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 0000 1111 4456778999999999999999887753
No 450
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=98.72 E-value=2e-10 Score=126.32 Aligned_cols=220 Identities=6% Similarity=-0.126 Sum_probs=139.4
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
+..+++|.+...... ....+..|++.++..+|.|++.+. ....++|++|.+. ++|.+.+.+.. .+.+...
T Consensus 18 ~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~-~l~~~~~ 95 (262)
T cd05572 18 NRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLG-GELWTILRDRG-LFDEYTA 95 (262)
T ss_pred CcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCC-CcHHHHHhhcC-CCCHHHH
Confidence 455888888765432 223355677778888999999987 4568999999998 89988765421 1222222
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+..|+.|||...+ |+.++++|+++++.-.+|+.|||+.......... . ..... .
T Consensus 96 ~~~--------~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~-~--~~~~~--------~ 156 (262)
T cd05572 96 RFY--------IACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKT-W--TFCGT--------P 156 (262)
T ss_pred HHH--------HHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccccc-c--cccCC--------c
Confidence 222 4467889999999888 9999999999999999999999987653221100 0 00011 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|++||..... ....+.|+|++|+++++++.|..|+....-++.+.. .-.....
T Consensus 157 ~~~~PE~~~~~-----------~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~------~~~~~~~--------- 210 (262)
T cd05572 157 EYVAPEIILNK-----------GYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIY------NDILKGN--------- 210 (262)
T ss_pred CccChhHhcCC-----------CCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHH------HHHhccC---------
Confidence 26778875311 123447999999999999998887753321100000 0000000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCccc-----HHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREH-----HDDLAQ 937 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----~~~i~~ 937 (1081)
..+.....+.....++++.||..+|..||. +..+..
T Consensus 211 -------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~ 251 (262)
T cd05572 211 -------GKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK 251 (262)
T ss_pred -------CCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence 000011122456679999999999999998 665543
No 451
>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po
Probab=98.72 E-value=1e-10 Score=130.30 Aligned_cols=170 Identities=5% Similarity=-0.106 Sum_probs=112.1
Q ss_pred CCCccEEEEeecc--ccccCCCCCCcceeeecccCceEEEe-----e--eeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWET--FQPVGGLLPQPEWTAWDQTVEYCAFA-----Y--QHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~--~~l~~~~~~~~k~v~w~~~~~~~~~~-----~--~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|+.+++|.+.... -.....+..|++.++-..|.|++.+. . ...++|++|++. +|.+.+.+....+.+..
T Consensus 24 ~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~--~l~~~~~~~~~~~~~~~ 101 (287)
T cd07840 24 GELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH--DLTGLLDSPEVKFTESQ 101 (287)
T ss_pred CeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccc--cHHHHHhccCCCCCHHH
Confidence 4457888776552 22222233455555555688888776 2 578999999974 66666554323344443
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..+++|+.|||...+ ||.++++|++++.+..+|++|||+............ ..... .
T Consensus 102 ~~~i--------~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~----~~~~~-----~ 164 (287)
T cd07840 102 IKCY--------MKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADY----TNRVI-----T 164 (287)
T ss_pred HHHH--------HHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccc----ccccc-----c
Confidence 3333 5678899999999888 999999999999999999999998875332211100 00011 1
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||...... ..+.+.||||||++++++++|..|+.
T Consensus 165 ~~y~~PE~~~~~~----------~~~~~~Dv~slG~~l~el~t~~~p~~ 203 (287)
T cd07840 165 LWYRPPELLLGAT----------RYGPEVDMWSVGCILAELFLGKPIFQ 203 (287)
T ss_pred cccCCceeeEccc----------cCChHHHHHHHHHHHHHHHhCCCCCC
Confidence 1278888643111 12345799999999999999887774
No 452
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=98.72 E-value=1.4e-10 Score=129.31 Aligned_cols=169 Identities=7% Similarity=-0.064 Sum_probs=111.3
Q ss_pred CCCccEEEEeeccccc--cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETFQP--VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l--~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
|..+++|.+......- ......|++.+.=..|.|++.+. ....++|+|||+. ++|.+.... ...++|....
T Consensus 26 ~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~-~~~~~~~~~~ 103 (286)
T cd07846 26 GQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDH-TVLDDLEKY-PNGLDESRVR 103 (286)
T ss_pred CCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCc-cHHHHHHhc-cCCCCHHHHH
Confidence 4557888775543221 11133455666667788888877 4578999999998 777654332 2234554444
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..+++|+.|||...+ ||.++++|++++..-.+|++|||+...-.... ... ..+.. ...
T Consensus 104 ~~--------~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~-~~~-~~~~~--------~~~ 165 (286)
T cd07846 104 KY--------LFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG-EVY-TDYVA--------TRW 165 (286)
T ss_pred HH--------HHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc-ccc-Ccccc--------eee
Confidence 34 5678899999999988 99999999999999999999999876422111 000 00011 122
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||..... ...+.+.||||||++++++++|..++.
T Consensus 166 y~aPE~~~~~----------~~~~~~~Dv~slG~~l~el~~g~~~~~ 202 (286)
T cd07846 166 YRAPELLVGD----------TKYGRAVDIWAVGCLVTEMLTGEPLFP 202 (286)
T ss_pred ccCcHHhccc----------cccCchHhHHHHHHHHHHHHcCCCCCC
Confidence 6788875211 012234799999999999998866653
No 453
>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.
Probab=98.71 E-value=4.3e-10 Score=124.20 Aligned_cols=193 Identities=6% Similarity=-0.063 Sum_probs=122.8
Q ss_pred cccCceEEEe-----eeeEEEEEecCcccccccccccc---cccceeeEeeeeeEeccCceEEEeeeCCccccch-hhh-
Q 001416 693 DQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIP---YATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDV-ETM- 762 (1081)
Q Consensus 693 ~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~---~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~-s~~- 762 (1081)
.+|.|++.+. ....++|+||++. ++|.+.+.. ....+.+.....+ +..+..|+.|||. ..+
T Consensus 66 ~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~l~~~l~~lh~~~~i~ 136 (269)
T cd08528 66 LRHPNIVRYYKTFLENDRLYIVMDLIEG-APLGEHFNSLKEKKQRFTEERIWNI--------FVQMVLALRYLHKEKRIV 136 (269)
T ss_pred CCCCCeeeEEeeEccCCeEEEEEecCCC-CcHHHHHHHHHhccCCCCHHHHHHH--------HHHHHHHHHHhccCCcee
Confidence 4678888877 4788999999998 888766522 1111222211222 4578889999996 556
Q ss_pred hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcc
Q 001416 763 KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPK 842 (1081)
Q Consensus 763 hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 842 (1081)
||.++..|++++++..+|++|||+.......... ........ |.|||..... ..+.+.
T Consensus 137 H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~--------~~~Pe~~~~~-----------~~~~~~ 194 (269)
T cd08528 137 HRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKL---TSVVGTIL--------YSCPEIVKNE-----------PYGEKA 194 (269)
T ss_pred ecCCCHHHEEECCCCcEEEecccceeeccccccc---ccccCccc--------CcChhhhcCC-----------CCchHH
Confidence 9999999999999999999999998753322100 01111222 6677765321 123347
Q ss_pred cccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHh
Q 001416 843 DIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK 922 (1081)
Q Consensus 843 dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 922 (1081)
||||+|+++++++.|..|+...... ... ..+.++ ...+...........+++++||
T Consensus 195 Dv~slG~ll~~l~~g~~p~~~~~~~--~~~-------~~~~~~---------------~~~~~~~~~~~~~l~~li~~cl 250 (269)
T cd08528 195 DVWAFGCILYQMCTLQPPFYSTNML--SLA-------TKIVEA---------------VYEPLPEGMYSEDVTDVITSCL 250 (269)
T ss_pred HHHHHHHHHHHHHhCCCcccccCHH--HHH-------HHHhhc---------------cCCcCCcccCCHHHHHHHHHHC
Confidence 9999999999999988777532211 000 000000 0001111123455678999999
Q ss_pred hhcccCcccHHHHHHHHH
Q 001416 923 WASRLGREHHDDLAQFML 940 (1081)
Q Consensus 923 ~~~~~~r~~~~~i~~~l~ 940 (1081)
..+|..||...++...|+
T Consensus 251 ~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 251 TPDAEARPDIIQVSAMIS 268 (269)
T ss_pred CCCCccCCCHHHHHHHhc
Confidence 999999999999987764
No 454
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.7e-08 Score=108.17 Aligned_cols=247 Identities=15% Similarity=0.218 Sum_probs=158.8
Q ss_pred ccceeeCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEEecCCccceEEe--ccCCCeEEEeec
Q 001416 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-------RQVIYELKAGGVDQRRLV--GAKLEKLAEGEL 72 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~lafsp~g~~Lasgs~dg~I~IWd~~t-------~~~i~~~~~~~~~~v~~v--s~~~~~lasg~~ 72 (1081)
+++..|.||+.+|+.++--.+.+-+++++.|.+|++|.+.. ..|..+++.+. ..+..+ -.+.+.+++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-k~i~~igfL~~lr~i~S--- 801 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-KPIHDIGFLADLRSIAS--- 801 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc-Ccccceeeeeccceeee---
Confidence 46778999999999999888889999999999999999863 22444444332 222111 122333333
Q ss_pred CCCCCceeeecCCceEEEEEeCCeEEEEEcCCCccccccccccccCCCCCeeecccCCCCCeEEEEEecCcEE-EEEecC
Q 001416 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT 151 (1081)
Q Consensus 73 d~~~~~~~~l~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~~~h~~~~V~sl~fsp~g~~~l~s~s~d~~i-~wd~~t 151 (1081)
.|+.|.+||..-++................|.++. +-+...+++.++....+ .+|.+.
T Consensus 802 --------------------cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 802 --------------------CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred --------------------ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccc
Confidence 59999999988777533211111111133444432 22344344554655555 488887
Q ss_pred CCccc---ccccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCC
Q 001416 152 MRGRD---IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA 228 (1081)
Q Consensus 152 ~~~~~---~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~ 228 (1081)
.+..+ +....+....++|++. .+.|++++.|-.+|+|.+.|.++|+.+..+. .-.-....++ .|..+
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaV-----a~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla----apsdq 930 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAV-----ADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA----APSDQ 930 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEe-----ccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc----CchhH
Confidence 65332 2223455678999999 6889999999999999999999999998886 4445555555 56667
Q ss_pred EEEEEeCCCcEEE-EEcCCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECCCeEEEEE
Q 001416 229 LLVSGGSDGLLIL-WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1081)
Q Consensus 229 ~l~sgs~Dg~V~v-Wd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~Dg~V~iWD 294 (1081)
.++....|.++-+ |-...+..... .+....+ ..|-. .-|+-|+++...+.+.+|-
T Consensus 931 ~L~~saldHslaVnWhaldgimh~q------~kpppep---ahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 931 ALAQSALDHSLAVNWHALDGIMHLQ------DKPPPEP---AHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred HHHhhcccceeEeeehhcCCeeeec------cCCCCcc---hhhhh--ccCceeEEeccCcEEEEEe
Confidence 8888889999999 87665542211 1111111 12222 2456788887777788875
No 455
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=98.71 E-value=2.3e-10 Score=127.58 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=131.6
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeec-ccCceEEEee----------eeEEEEEecCccccccccccccc---ccc
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWD-QTVEYCAFAY----------QHYIVISSLCPQYRYLGDVAIPY---ATG 729 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~-~~~~~~~~~~----------~~~~~v~~y~~~~gsl~d~~~~~---~~~ 729 (1081)
|+.+++|.++-... ....+..|.+.++=. +|.|++.+.. +..++|+|||+. |+|.+.+.+. ...
T Consensus 43 ~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~ 120 (286)
T cd06638 43 GSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNG-GSVTDLVKGFLKRGER 120 (286)
T ss_pred CceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCC-CCHHHHHHHhhccCcc
Confidence 44577877653211 111233344444444 6999999862 357999999999 8988765321 111
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+.+.....+ +..+.+|+.|||...+ |+.++.+|++++..-.+|+.|||+............ ......
T Consensus 121 ~~~~~~~~~--------~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~~~-- 188 (286)
T cd06638 121 MEEPIIAYI--------LHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRN--TSVGTP-- 188 (286)
T ss_pred ccHHHHHHH--------HHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccc--cccCCC--
Confidence 111111112 3457789999999988 999999999999999999999998654221100000 000111
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEE
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLW 888 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 888 (1081)
.|.|||+...... .+..-+.+.||||+|++++++.+|..|+...... +... .....
T Consensus 189 ------~y~aPE~~~~~~~------~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~-~~~~--------~~~~~--- 244 (286)
T cd06638 189 ------FWMAPEVIACEQQ------LDSTYDARCDVWSLGITAIELGDGDPPLADLHPM-RALF--------KIPRN--- 244 (286)
T ss_pred ------cccChhhhchhhh------ccccccchhhhhhHHHHHHHHhcCCCCCCCCchh-HHHh--------hcccc---
Confidence 2678887643211 0111234579999999999998887776422110 0000 00000
Q ss_pred EEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 889 LIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 889 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
...++..+ -.+.....+++..|+..+|..||.+..|..
T Consensus 245 --------~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~ell~ 282 (286)
T cd06638 245 --------PPPTLHQP---ELWSNEFNDFIRKCLTKDYEKRPTVSDLLQ 282 (286)
T ss_pred --------CCCcccCC---CCcCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 00000000 012345668999999999999999888754
No 456
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=98.71 E-value=2.2e-10 Score=133.45 Aligned_cols=115 Identities=4% Similarity=-0.045 Sum_probs=82.8
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+...... ....+..|.+.++-.+|.|++.+. ....++|+|||+. |+|.+.+.... .+....
T Consensus 25 ~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-g~L~~~i~~~~-~~~~~~ 102 (376)
T cd05598 25 TNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG-GDMMSLLIRLG-IFEEDL 102 (376)
T ss_pred CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCC-CcHHHHHHhcC-CCCHHH
Confidence 3566899988754321 112233456666777899988876 4678999999999 99988765421 111110
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeee
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALI 787 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~ 787 (1081)
-..+ +..++.||.|||...| |+.+|++|++++..-.+|++|||+-
T Consensus 103 ~~~~--------~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 103 ARFY--------IAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence 0111 4467899999999999 9999999999999999999999984
No 457
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.71 E-value=1.8e-06 Score=102.04 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=95.7
Q ss_pred CeeecccCCCCCeEEEEEecC---cEEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEECC-C--eEEE
Q 001416 122 GFASPPPSTKGRHFLVICCVN---KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-G--VIRV 195 (1081)
Q Consensus 122 ~V~sl~fsp~g~~~l~s~s~d---~~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~D-g--~I~l 195 (1081)
.+.+++|+|||+.++++.+.+ .+.+||..++....+ ..+........| +|+++.|+..+.. + .|.+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~-----s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPGIDTEPSW-----SPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCCCCCCEEE-----CCCCCEEEEEECCCCCceEEE
Confidence 345678999998776665533 355688877643332 223334456688 6899988877653 3 5788
Q ss_pred EEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCC---cEEEEEcCCCCcccccccceeecccCCcEEEEEEe
Q 001416 196 LSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1081)
Q Consensus 196 wd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg---~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fs 272 (1081)
+|+.+++... +. .+...+.... ++|++++++.++.++ .|.+||+.++... .+..+ .......|+
T Consensus 307 ~d~~~~~~~~-l~-~~~~~~~~~~---~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-------~l~~~-~~~~~p~~s 373 (417)
T TIGR02800 307 MDADGGEVRR-LT-FRGGYNASPS---WSPDGDLIAFVHREGGGFNIAVMDLDGGGER-------VLTDT-GLDESPSFA 373 (417)
T ss_pred EECCCCCEEE-ee-cCCCCccCeE---ECCCCCEEEEEEccCCceEEEEEeCCCCCeE-------EccCC-CCCCCceEC
Confidence 8887765443 33 3445566666 489999999888876 7889998775421 11111 223456899
Q ss_pred eecCCCCEEEEEECCC---eEEEEECC
Q 001416 273 RVMGGSPQLITIGADK---TLAIWDTV 296 (1081)
Q Consensus 273 p~~~~~~~Lvsgs~Dg---~V~iWDl~ 296 (1081)
| ++.+|+..+.++ .+.+.+..
T Consensus 374 p---dg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 374 P---NGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred C---CCCEEEEEEeCCCcEEEEEEECC
Confidence 9 888887776653 35555543
No 458
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.71 E-value=5.4e-05 Score=83.62 Aligned_cols=207 Identities=12% Similarity=0.068 Sum_probs=140.4
Q ss_pred eCCeEEEEEcCCCcccccccccccc------CCCCCeeecc-cCCCCCeEEEEEecCcEEEEEecCCCcccccccccCCC
Q 001416 93 YDDDVRFWQLWRNRAAAAEAPTAVS------NVTSGFASPP-PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNK 165 (1081)
Q Consensus 93 ~Dg~IriWdl~~~~~~~~~~~~~~~------h~~~~V~sl~-fsp~g~~~l~s~s~d~~i~wd~~t~~~~~~~~~~~~~~ 165 (1081)
..|.|.++|..+.+.....+..... ....+..-+. |++-...+++..|.++..+.+...+- .....+..
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~----~iqv~~~~ 360 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY----SIQVGKKG 360 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe----eEEcCCCC
Confidence 4678888888776643322221111 1111111222 44433348888888888776544321 12345666
Q ss_pred CeeEEEEeeccccCCCCEEEEEECCC-eEEEEEcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEc
Q 001416 166 SLVCMEFLSRSAVGDVPLVAFGSSDG-VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1081)
Q Consensus 166 ~I~~ia~~p~~~sp~~~~l~sgs~Dg-~I~lwd~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~ 244 (1081)
.|+-..+ ..++.-++.|..|| .+-++|..+++.. .+. +.-+.|.++. .+++|+.++.+.....+-+.|+
T Consensus 361 ~VrY~r~-----~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e-~~lg~I~av~---vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 361 GVRYRRI-----QVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIE-KDLGNIEAVK---VSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred ceEEEEE-----ccCCcceEEeccCCceEEEEecCCceEE-Eee-CCccceEEEE---EcCCCcEEEEEcCceEEEEEEe
Confidence 6887777 45666889999999 8999999877654 444 5778899998 6999999999999999999999
Q ss_pred CCCCcccccccceeecccCCcEEEEEEeeecCCCCEEEEEECC----CeEEEEECCCCceeeEecCCCccccCCCCeEEE
Q 001416 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD----KTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1081)
Q Consensus 245 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs~D----g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v 320 (1081)
++++.. ..-+...+-|+..+||| ++++++-+--+ ..|+++|+.+++....- +..+| -.+-
T Consensus 431 dngnv~------~idkS~~~lItdf~~~~---nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT----T~ta~---DfsP 494 (668)
T COG4946 431 DNGNVR------LIDKSEYGLITDFDWHP---NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT----TPTAY---DFSP 494 (668)
T ss_pred cCCCee------EecccccceeEEEEEcC---CceeEEEecCcceeeeeEEEEecCCCeEEEec----CCccc---ccCc
Confidence 998732 11234456799999999 89999977655 47999999998865432 22333 3457
Q ss_pred eecCCCCEE
Q 001416 321 PRAPNLDIL 329 (1081)
Q Consensus 321 ~~spd~~ll 329 (1081)
+|.||+++|
T Consensus 495 aFD~d~ryL 503 (668)
T COG4946 495 AFDPDGRYL 503 (668)
T ss_pred ccCCCCcEE
Confidence 899999965
No 459
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=98.71 E-value=2.1e-10 Score=130.74 Aligned_cols=179 Identities=9% Similarity=-0.071 Sum_probs=113.7
Q ss_pred CCCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEe
Q 001416 663 EAAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
.|..+++|.++-+.. ...+.+..|.+.++=.+|.|++.+. ....++|++||+. |+|.+++... ...+.+..
T Consensus 24 ~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~l~~~~ 102 (327)
T cd08227 24 TGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAY-GSAKDLICTHFMDGMSELA 102 (327)
T ss_pred cCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCC-CcHHHHHHhhccCCCCHHH
Confidence 456688888765432 2233344466666667899999877 4678999999998 9998876432 12233332
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +.++.+|+.|||...+ |+.+|++|++++....++++||+........ ....+.....+... ...
T Consensus 103 ~~~i--------~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~ 171 (327)
T cd08227 103 IAYI--------LQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINH-GQRLRVVHDFPKYS--VKV 171 (327)
T ss_pred HHHH--------HHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccc-cccccccccccccc--cce
Confidence 2223 5578899999999888 9999999999999999999998743211000 00000000000000 001
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+..... ..-+.+.||||+|++++|+++|..||.
T Consensus 172 ~~y~aPE~~~~~~---------~~~~~~~DiwslG~il~el~~g~~pf~ 211 (327)
T cd08227 172 LPWLSPEVLQQNL---------QGYDAKSDIYSVGITACELANGHVPFK 211 (327)
T ss_pred ecccChHHhhccc---------CCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 1277888763211 012345799999999999999998885
No 460
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=98.70 E-value=3.3e-10 Score=126.52 Aligned_cols=169 Identities=8% Similarity=-0.073 Sum_probs=113.1
Q ss_pred CCCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeE
Q 001416 663 EAAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~ 733 (1081)
.|+.+++|.+..+...- ......|++.++=.+|.+++.+. -+..|+|++||+. ++|.+.+... ...+.+.
T Consensus 24 ~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~ 102 (285)
T cd05632 24 TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNG-GDLKFHIYNMGNPGFEEE 102 (285)
T ss_pred CCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccC-ccHHHHHHHhcCCCCCHH
Confidence 35568888886543321 11133456666667888888776 3578999999998 8887655331 1234444
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..+++|+.|||...+ |+.++++|++++....+|++|||+...-........ .....
T Consensus 103 ~~~~~--------~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~---~~g~~------ 165 (285)
T cd05632 103 RALFY--------AAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRG---RVGTV------ 165 (285)
T ss_pred HHHHH--------HHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccC---CCCCc------
Confidence 33333 5678899999999988 999999999999999999999997653211100000 00111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+... ...+.+.|+||+|++++++++|..|+.
T Consensus 166 --~~~aPE~~~~-----------~~~~~~~Di~slG~~l~~l~~g~~P~~ 202 (285)
T cd05632 166 --GYMAPEVLNN-----------QRYTLSPDYWGLGCLIYEMIEGQSPFR 202 (285)
T ss_pred --CccChHHhcC-----------CCCCcccchHHHHHHHHHHHhCCCCCC
Confidence 2678887532 112334699999999999999888875
No 461
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=98.70 E-value=1.1e-10 Score=132.70 Aligned_cols=169 Identities=4% Similarity=-0.093 Sum_probs=107.4
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeee-cccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAW-DQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w-~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
.|+.+++|.+..+... -......|.+.+.- .+|.|++.+. ..+.++|+|||+. |+|.+.+.. ...+...
T Consensus 19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~-g~L~~~i~~-~~~l~~~ 96 (320)
T cd05590 19 SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG-GDLMFHIQK-SRRFDEA 96 (320)
T ss_pred CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC-chHHHHHHH-cCCCCHH
Confidence 3556889887654321 11112222222221 2578888765 5678999999998 888765543 1222222
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ....
T Consensus 97 ~~~~~--------~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~--~~~g-------- 158 (320)
T cd05590 97 RARFY--------AAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTS--TFCG-------- 158 (320)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCccc--cccc--------
Confidence 22222 4578899999999988 999999999999999999999998643111100000 0000
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
...|.|||+.... .-+.+.||||+|++++++++|..||.
T Consensus 159 t~~y~aPE~~~~~-----------~~~~~~DiwslG~il~el~~g~~Pf~ 197 (320)
T cd05590 159 TPDYIAPEILQEM-----------LYGPSVDWWAMGVLLYEMLCGHAPFE 197 (320)
T ss_pred CccccCHHHHcCC-----------CCCCccchhhhHHHHHHHhhCCCCCC
Confidence 1126788875321 12334799999999999999888875
No 462
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=98.70 E-value=8.7e-11 Score=134.02 Aligned_cols=168 Identities=5% Similarity=-0.083 Sum_probs=108.7
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcceeee-cccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPEWTAW-DQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w-~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
+..+++|.+..+...- ...+..|...+.- .+|.|++.+. ....++|+|||+. |+|.+.+.. ...+.+..
T Consensus 20 ~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~-~~L~~~~~~-~~~l~~~~ 97 (329)
T cd05618 20 ERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG-GDLMFHMQR-QRKLPEEH 97 (329)
T ss_pred CCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC-CCHHHHHHH-cCCCCHHH
Confidence 4558888887653221 1112223322222 3688888877 4678999999998 888765433 12233322
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ .... .
T Consensus 98 ~~~i--------~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~--~~~g--------t 159 (329)
T cd05618 98 ARFY--------SAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTS--TFCG--------T 159 (329)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccc--cccC--------C
Confidence 2223 4578899999999988 999999999999999999999998653111100000 0001 1
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+... ...+.+.||||+|++++++++|..||.
T Consensus 160 ~~y~aPE~~~~-----------~~~~~~~DiwslG~il~el~~g~~Pf~ 197 (329)
T cd05618 160 PNYIAPEILRG-----------EDYGFSVDWWALGVLMFEMMAGRSPFD 197 (329)
T ss_pred ccccCHHHHcC-----------CCCCCccceecccHHHHHHhhCCCCCc
Confidence 12678887532 112345799999999999999988885
No 463
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=98.70 E-value=1.1e-10 Score=130.22 Aligned_cols=227 Identities=10% Similarity=-0.020 Sum_probs=136.3
Q ss_pred CCCccEEEEeecc-ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWET-FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~-~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|..+++|.+.-.. .....++..|++.++-.+|.|++.+. ..+.++|+||++. |+|.+.... ...+.|.....
T Consensus 30 ~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~-~~~~~~~~~~~ 107 (284)
T cd06620 30 GTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDC-GSLDRIYKK-GGPIPVEILGK 107 (284)
T ss_pred CcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCC-CCHHHHHHh-ccCCCHHHHHH
Confidence 4446777665432 22223355566677778899999988 5678999999998 888765433 11222322222
Q ss_pred eEeccCceEEEeeeCCccccchh-hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVE-TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s-~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
+ +..+..|+.|||.. .+ |+.++++|++++....++++|||+......... . .......
T Consensus 108 ~--------~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~--~--~~~~~~~-------- 167 (284)
T cd06620 108 I--------AVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIA--D--TFVGTST-------- 167 (284)
T ss_pred H--------HHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhcc--C--ccccCcc--------
Confidence 3 45677899999974 45 999999999999999999999998643211100 0 0001111
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccc
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMC 895 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~ 895 (1081)
+.|||.... ...+.+.||||||++++++++|..|+....-+ +.....+.-.......
T Consensus 168 ~~aPE~~~~-----------~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~---------- 224 (284)
T cd06620 168 YMSPERIQG-----------GKYTVKSDVWSLGISIIELALGKFPFAFSNID--DDGQDDPMGILDLLQQ---------- 224 (284)
T ss_pred cCCHHHHcc-----------CCCCccchHHHHHHHHHHHHhCCCCCcccchh--hhhhhhhhHHHHHHHH----------
Confidence 567775421 12334579999999999999988887532111 0000000000000000
Q ss_pred cccc-CCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 896 AHAL-SLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 896 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
+... +...+ ...++....+++..|+..+|..||..+.+.+
T Consensus 225 ~~~~~~~~~~--~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~ 265 (284)
T cd06620 225 IVQEPPPRLP--SSDFPEDLRDFVDACLLKDPTERPTPQQLCA 265 (284)
T ss_pred HhhccCCCCC--chhcCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 0000 00000 0124456779999999999999999988865
No 464
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=98.70 E-value=4e-10 Score=129.08 Aligned_cols=216 Identities=10% Similarity=0.011 Sum_probs=142.7
Q ss_pred ccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe----eeeEEEEEecCcccccccccccccccceeeEeeeeeE-e
Q 001416 667 QNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV-V 740 (1081)
Q Consensus 667 ~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~-~ 740 (1081)
||||-..-.... .....+.|+-.|--++|.|++++- .+-..+|+|.||- |||-|=|.. +.. ..|+ .
T Consensus 141 VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELapl-GSLldrLrk-a~~------~~llv~ 212 (1039)
T KOG0199|consen 141 VAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPL-GSLLDRLRK-AKK------AILLVS 212 (1039)
T ss_pred EEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhccc-chHHHHHhh-ccc------cceeHH
Confidence 788765444333 334467788899999999999987 5788899999999 998877665 221 1121 1
Q ss_pred ccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccc--cCCcchhhhhhhcccc
Q 001416 741 TPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIK--LRPPMLQVVRLASFQH 817 (1081)
Q Consensus 741 t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 817 (1081)
+. .--+.-|++||.||....+ |--|--.|.++-++=.+||+||||-.--+..... ..++ ..-|.- |.
T Consensus 213 ~L-cdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~-Yvm~p~rkvPfA--------WC 282 (1039)
T KOG0199|consen 213 RL-CDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM-YVMAPQRKVPFA--------WC 282 (1039)
T ss_pred HH-HHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcc-eEecCCCcCccc--------cc
Confidence 10 0003467899999998777 9999999999999999999999997642211000 0011 112334 99
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcc-eeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGV-AVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCA 896 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~ 896 (1081)
|||-+++..+ +.+.|||+||+-+.|+++.|+ |+. ... +..++. .+|+--
T Consensus 283 aPEsLrh~kF-----------ShaSDvWmyGVTiWEMFtyGEePW~--G~~--------g~qIL~-------~iD~~e-- 332 (1039)
T KOG0199|consen 283 APESLRHRKF-----------SHASDVWMYGVTIWEMFTYGEEPWV--GCR--------GIQILK-------NIDAGE-- 332 (1039)
T ss_pred CHhHhccccc-----------cccchhhhhhhhHHhhhccCCCCCC--CCC--------HHHHHH-------hccccc--
Confidence 9999886432 234699999998888876553 432 111 111111 111000
Q ss_pred cccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 897 HALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.|.+| -.|....-++++.||...|.+||.|..|+
T Consensus 333 ---rLpRP---k~csedIY~imk~cWah~paDRptFsair 366 (1039)
T KOG0199|consen 333 ---RLPRP---KYCSEDIYQIMKNCWAHNPADRPTFSAIR 366 (1039)
T ss_pred ---cCCCC---CCChHHHHHHHHHhccCCccccccHHHHH
Confidence 11111 14777888999999999999999999997
No 465
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=98.69 E-value=3.5e-10 Score=126.09 Aligned_cols=169 Identities=7% Similarity=-0.077 Sum_probs=111.2
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc--cceeeEe
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA--TGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~--~~~~w~~ 734 (1081)
|..+++|.+.....+ ....+..|++.++-.+|.|++.+. ....++|++||+ +.|.+.+.... ..+++..
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~--~~l~~~~~~~~~~~~~~~~~ 102 (285)
T cd07861 25 GQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS--MDLKKYLDSLPKGQYMDAEL 102 (285)
T ss_pred CcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC--CCHHHHHhcCCCCCcCCHHH
Confidence 445788877654322 223344566667777899999988 467899999997 45554443211 1233333
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..+.+|+.|||...+ |+.++++|++++....+|++|||+...-...... ..... -.
T Consensus 103 ~~~~--------~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~-----~~ 164 (285)
T cd07861 103 VKSY--------LYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRV-----YTHEV-----VT 164 (285)
T ss_pred HHHH--------HHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCccc-----ccCCc-----cc
Confidence 2233 5678899999999988 9999999999999999999999987532211100 00000 01
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||...... ..+.+.||||+|++++++++|..|+.
T Consensus 165 ~~y~aPE~~~~~~----------~~~~~~Dv~slG~il~~l~tg~~~~~ 203 (285)
T cd07861 165 LWYRAPEVLLGSP----------RYSTPVDIWSIGTIFAEMATKKPLFH 203 (285)
T ss_pred ccccChHHhcCCC----------CcCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 2277888653211 01234799999999999999887775
No 466
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=98.69 E-value=2e-10 Score=128.36 Aligned_cols=231 Identities=10% Similarity=-0.049 Sum_probs=134.2
Q ss_pred CCCccEEEEeecccccc--CCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccc-eeeEee
Q 001416 664 AAPQNFQLYSWETFQPV--GGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATG-AVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~--~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~-~~w~~~ 735 (1081)
+..+++|..+-.. ... ..+..|...++=.+|.|++.+. ....++|+|||+. |+|.+.+.+.... ..+...
T Consensus 36 ~~~vavK~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~ 113 (288)
T cd05061 36 ETRVAVKTVNESA-SLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAH-GDLKSYLRSLRPEAENNPGR 113 (288)
T ss_pred ceEEEEEECCCcC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCC-CCHHHHHHHhccccccCCCC
Confidence 3457888754221 111 1123355556666788888877 4467999999998 9998776531100 000000
Q ss_pred eeeEeccCce--EEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 736 QLFVVTPTTI--ECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 736 ~~~~~t~~~i--~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
.. .+...+ -+..+..|+.|||...+ |+.+|++|+++++...+|++|||+...............-..+
T Consensus 114 ~~--~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~------- 184 (288)
T cd05061 114 PP--PTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP------- 184 (288)
T ss_pred CC--CCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCccc-------
Confidence 00 000000 14467789999999888 9999999999999999999999986532111000000000001
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCc-ceeeecCCCCCCCCCCCCcEEeeeecCeEEEEe
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGG-VAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID 891 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 891 (1081)
..+.|||.... ..-+.+.||||+|++++|+..++ .|+. ....++... +. ...+
T Consensus 185 -~~y~~pE~~~~-----------~~~~~~~DvwslG~~l~el~~~~~~p~~--~~~~~~~~~----~~--~~~~------ 238 (288)
T cd05061 185 -VRWMAPESLKD-----------GVFTTSSDMWSFGVVLWEITSLAEQPYQ--GLSNEQVLK----FV--MDGG------ 238 (288)
T ss_pred -ccccCHHHhcc-----------CCCChHhHHHHHHHHHHHHHhCCCCCCC--CCCHHHHHH----HH--HcCC------
Confidence 12567776421 11234579999999999887633 3432 111110000 00 0000
Q ss_pred ccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHHhc
Q 001416 892 RYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGM 942 (1081)
Q Consensus 892 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~~~ 942 (1081)
..+ ..-.++....+++..|+..+|..||+...+.++|++.
T Consensus 239 ------~~~-----~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~ 278 (288)
T cd05061 239 ------YLD-----QPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD 278 (288)
T ss_pred ------CCC-----CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence 000 0113456678999999999999999999999988864
No 467
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=98.69 E-value=1.4e-10 Score=129.71 Aligned_cols=226 Identities=9% Similarity=0.011 Sum_probs=136.3
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEee-------eeEEEEEecCcccccccccccc---cccceee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFAY-------QHYIVISSLCPQYRYLGDVAIP---YATGAVW 732 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~~-------~~~~~v~~y~~~~gsl~d~~~~---~~~~~~w 732 (1081)
+..+++|.+..... ....++..|++.++=.+|.|++.+.. ...++|+|||+. ++|.+.+.. ....+..
T Consensus 26 ~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~l~~ 104 (287)
T cd06621 26 GMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEG-GSLDSIYKKVKKRGGRIGE 104 (287)
T ss_pred CeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCC-CCHHHHHHHHHhcCCCCCH
Confidence 45578888765433 23334556777777788999999861 257899999998 888765432 0111111
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..++.|+.|||...+ |+.+++.|++++..-.+|++|||+...-...... .. .
T Consensus 105 ~~~~~i--------~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~--------~ 164 (287)
T cd06621 105 KVLGKI--------AESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAG----TF--------T 164 (287)
T ss_pred HHHHHH--------HHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccccccc----cc--------c
Confidence 111112 4567889999999888 9999999999999999999999986532111000 00 0
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeee-ecCeEEEE
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGV-KDGVLWLI 890 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~ 890 (1081)
....+.|||..... ..+.+.|||++|++++++++|..|+.....+. ..+.-.... ...
T Consensus 165 ~~~~y~~pE~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~~~----- 223 (287)
T cd06621 165 GTSFYMAPERIQGK-----------PYSITSDVWSLGLTLLEVAQNRFPFPPEGEPP-----LGPIELLSYIVNM----- 223 (287)
T ss_pred CCccccCHHHhcCC-----------CCCchhhHHHHHHHHHHHHhCCCCCCcccCCC-----CChHHHHHHHhcC-----
Confidence 12236677765321 12334799999999999999887775331100 000000000 000
Q ss_pred eccccccccCCCC-cccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 891 DRYMCAHALSLSH-PGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 891 d~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
....+.. +...-.......+++..|+..+|..||+...|.+
T Consensus 224 ------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 224 ------PNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred ------CchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 0000000 0000011234569999999999999999988865
No 468
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=98.69 E-value=1e-10 Score=127.28 Aligned_cols=219 Identities=10% Similarity=0.032 Sum_probs=139.4
Q ss_pred CCCccEEEEeeccccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeee
Q 001416 664 AAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLF 738 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~ 738 (1081)
|..+++|.+.-...+-...+..|+..++-.+|.++..+. ....+++++|++. ++|.+++......+.+.....+
T Consensus 25 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~-~~L~~~~~~~~~~~~~~~~~~i 103 (253)
T cd05122 25 GKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSG-GSLKDLLKSTNQTLTESQIAYV 103 (253)
T ss_pred CcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCC-CcHHHHHhhcCCCCCHHHHHHH
Confidence 445778887665543334466677777777899998888 3578899999998 7888776543223444433333
Q ss_pred EeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcccc
Q 001416 739 VVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQH 817 (1081)
Q Consensus 739 ~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1081)
+..++.++.|||...+ ||.++++|++++....+|++|||+.......... . .. .....|.
T Consensus 104 --------~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-~--~~--------~~~~~~~ 164 (253)
T cd05122 104 --------CKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKAR-N--TM--------VGTPYWM 164 (253)
T ss_pred --------HHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccccccccccc-c--ce--------ecCCccc
Confidence 4567789999999888 9999999999999999999999987653322110 0 00 0112266
Q ss_pred CCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecccccc
Q 001416 818 AASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAH 897 (1081)
Q Consensus 818 ~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~ 897 (1081)
+||..... ..+.+.||||+|+++++++.|..|+....... . +..... ..
T Consensus 165 ~PE~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~------~~~~~~-~~------------ 213 (253)
T cd05122 165 APEVINGK-----------PYDYKADIWSLGITAIELAEGKPPYSELPPMK-A------LFKIAT-NG------------ 213 (253)
T ss_pred CHHHHcCC-----------CCCccccHHHHHHHHHHHHhCCCCCCCCchHH-H------HHHHHh-cC------------
Confidence 77764321 13455799999999999998887765321110 0 000000 00
Q ss_pred ccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 898 ALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 898 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
.+.... .........+++..|+..+|..||+...+.
T Consensus 214 -~~~~~~--~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l 249 (253)
T cd05122 214 -PPGLRN--PEKWSDEFKDFLKKCLQKNPEKRPTAEQLL 249 (253)
T ss_pred -CCCcCc--ccccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 000000 001234567899999999999999987764
No 469
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=98.68 E-value=1.7e-10 Score=131.66 Aligned_cols=170 Identities=6% Similarity=-0.092 Sum_probs=106.2
Q ss_pred CCCCccEEEEeeccccccCCC---CCCccee---eecccCceEEEe-----eeeEEEEEecCccccccccccccccccee
Q 001416 663 EAAPQNFQLYSWETFQPVGGL---LPQPEWT---AWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAV 731 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l~~~~---~~~~k~v---~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~ 731 (1081)
.|+.+++|.+..+...--+.+ ..|.+.+ .-.+|.+++.+. ....++|+|||+. |+|.+.+... ..+.
T Consensus 17 ~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~-~~~~ 94 (330)
T cd05586 17 TRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG-GELFWHLQKE-GRFS 94 (330)
T ss_pred CCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC-ChHHHHHHhc-CCCC
Confidence 356689998876433211111 1111111 112578887765 4678999999998 8887655431 1222
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVV 810 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1081)
...-..+ +..+..|+.|||...+ |+.+|+.|++++..-.+|++|||+............ .....
T Consensus 95 ~~~~~~~--------~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~--~~~gt----- 159 (330)
T cd05586 95 EDRAKFY--------IAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTN--TFCGT----- 159 (330)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCcc--CccCC-----
Confidence 2211112 4568889999999999 999999999999999999999998643111000000 00011
Q ss_pred hhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 811 RLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 811 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... ...+.+.||||+|++++++++|..|+.
T Consensus 160 ---~~y~aPE~~~~~----------~~~~~~~DvwslGvil~elltG~~Pf~ 198 (330)
T cd05586 160 ---TEYLAPEVLLDE----------KGYTKHVDFWSLGVLVFEMCCGWSPFY 198 (330)
T ss_pred ---ccccCHHHHcCC----------CCCCCccceeccccEEEEeccCCCCCC
Confidence 127788875321 012344799999999999999988874
No 470
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=98.68 E-value=3.2e-10 Score=123.95 Aligned_cols=221 Identities=11% Similarity=-0.023 Sum_probs=143.4
Q ss_pred CCCccEEEEeeccc--cccCCCCCCcceeeecccCceEEEe-----e--eeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETF--QPVGGLLPQPEWTAWDQTVEYCAFA-----Y--QHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~--~l~~~~~~~~k~v~w~~~~~~~~~~-----~--~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|..+++|.++.... .-...+..|++.++=.+|.|++.+. . ...+++++|++. ++|.+.+.+.. .+.|..
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~-~~~~~~ 102 (260)
T cd06606 25 GELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSG-GSLSSLLKKFG-KLPEPV 102 (260)
T ss_pred CcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCC-CcHHHHHHHcC-CCCHHH
Confidence 45588888877653 2233355566666667799999987 2 568899999988 88888776532 444444
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..+.+|+.|||...+ ||.++.+|..++....+|++|||......................
T Consensus 103 ~~~~--------~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~------ 168 (260)
T cd06606 103 IRKY--------TRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPY------ 168 (260)
T ss_pred HHHH--------HHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCcc------
Confidence 4444 5678889999999888 999999999999999999999998876443221000000011111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
|.+||..... ....+.||||+|+++++++.|..|+....-.. ...+. +..
T Consensus 169 --y~~pE~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~------~~~~~--~~~--------- 218 (260)
T cd06606 169 --WMAPEVIRGE-----------EYGRAADIWSLGCTVIEMATGKPPWSELGNPM------AALYK--IGS--------- 218 (260)
T ss_pred --ccCHhhhcCC-----------CCCchhhHHHHHHHHHHHHhCCCCCCCCCchH------HHHHh--ccc---------
Confidence 5677765321 13445799999999999999888875332000 00000 000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLA 936 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 936 (1081)
....+.+.........+++..|+..+|..||+...+.
T Consensus 219 ------~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll 255 (260)
T cd06606 219 ------SGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELL 255 (260)
T ss_pred ------cCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHh
Confidence 0000111112245677899999999999999988764
No 471
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=98.68 E-value=3.5e-10 Score=128.34 Aligned_cols=183 Identities=7% Similarity=-0.114 Sum_probs=115.0
Q ss_pred cccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhh
Q 001416 693 DQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKE 766 (1081)
Q Consensus 693 ~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l 766 (1081)
.+|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.......+ +..++.|+.|||...+ |+.+
T Consensus 53 ~~hp~i~~~~~~~~~~~~~~lv~e~~~g-g~L~~~~~~~-~~~~~~~~~~~--------~~qi~~al~~LH~~~ivH~dl 122 (316)
T cd05592 53 WEHPFLTHLFCTFQTKEHLFFVMEYLNG-GDLMFHIQSS-GRFDEARARFY--------AAEIICGLQFLHKKGIIYRDL 122 (316)
T ss_pred cCCCCccceeeEEEcCCEEEEEEcCCCC-CcHHHHHHHc-CCCCHHHHHHH--------HHHHHHHHHHHHHCCEEeCCC
Confidence 4788888877 4678999999998 8887665431 11211111112 4568889999999998 9999
Q ss_pred hhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccc
Q 001416 767 EMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEE 846 (1081)
Q Consensus 767 ~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys 846 (1081)
|++|++++....+|++|||+............ .... ...|.|||+... ...+.+.||||
T Consensus 123 kp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~--~~~g--------t~~y~aPE~~~~-----------~~~~~~~Dvws 181 (316)
T cd05592 123 KLDNVLLDKDGHIKIADFGMCKENMNGEGKAS--TFCG--------TPDYIAPEILKG-----------QKYNESVDWWS 181 (316)
T ss_pred CHHHeEECCCCCEEEccCcCCeECCCCCCccc--cccC--------CccccCHHHHcC-----------CCCCCcccchh
Confidence 99999999999999999998754211110000 0001 112678887532 11234579999
Q ss_pred cceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcc
Q 001416 847 RKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASR 926 (1081)
Q Consensus 847 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1081)
+|++++|+++|..|+...... +.. . .+... .+.+...+.....++++.|+..+|
T Consensus 182 lG~il~ell~G~~Pf~~~~~~--~~~------~-~i~~~-----------------~~~~~~~~~~~~~~ll~~~l~~~P 235 (316)
T cd05592 182 FGVLLYEMLIGQSPFHGEDED--ELF------D-SILND-----------------RPHFPRWISKEAKDCLSKLFERDP 235 (316)
T ss_pred HHHHHHHHHhCCCCCCCCCHH--HHH------H-HHHcC-----------------CCCCCCCCCHHHHHHHHHHccCCH
Confidence 999999999988877521110 000 0 00000 000011123345689999999999
Q ss_pred cCcccH
Q 001416 927 LGREHH 932 (1081)
Q Consensus 927 ~~r~~~ 932 (1081)
..||..
T Consensus 236 ~~R~~~ 241 (316)
T cd05592 236 TKRLGV 241 (316)
T ss_pred HHcCCC
Confidence 999875
No 472
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=98.67 E-value=2.6e-10 Score=130.12 Aligned_cols=169 Identities=4% Similarity=-0.079 Sum_probs=108.9
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeee-cccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAW-DQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w-~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|..+++|.+..+... ....+..|.+.+.- .+|.|++.+. ....++|+|||+. |+|.+.+.. ...+.+..
T Consensus 20 ~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~-g~L~~~~~~-~~~l~~~~ 97 (329)
T cd05588 20 RRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG-GDLMFHMQR-QRKLPEEH 97 (329)
T ss_pred CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC-CCHHHHHHH-cCCCCHHH
Confidence 455889888754321 11112223322222 2688888776 4568999999998 888765432 12233333
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.||.|||...+ |+.+|+.|++++....+|++|||+........... ..+...
T Consensus 98 ~~~~--------~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~--~~~~gt-------- 159 (329)
T cd05588 98 ARFY--------SAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTT--STFCGT-------- 159 (329)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCcc--ccccCC--------
Confidence 3333 5578899999999888 99999999999999999999999864211000000 000111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAV 863 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~ 863 (1081)
..|.|||+... ..-+.+.||||+|++++++++|..|+..
T Consensus 160 ~~y~aPE~~~~-----------~~~~~~~DiwslG~~l~el~~g~~Pf~~ 198 (329)
T cd05588 160 PNYIAPEILRG-----------EDYGFSVDWWALGVLMFEMMAGRSPFDI 198 (329)
T ss_pred ccccCHHHHcC-----------CCCCCccceechHHHHHHHHHCCCCccc
Confidence 12778887532 1123457999999999999999888853
No 473
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=1.9e-07 Score=107.25 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=167.7
Q ss_pred eecccCC--CCCeEEEEEecCcEEEEEecCCCcccc-cccccCCCCeeEEEEeeccccCCCCEEEEEECCCeEEEEEcCC
Q 001416 124 ASPPPST--KGRHFLVICCVNKAIFLDLVTMRGRDI-PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1081)
Q Consensus 124 ~sl~fsp--~g~~~l~s~s~d~~i~wd~~t~~~~~~-~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~Dg~I~lwd~~~ 200 (1081)
-.+.|+| .-..++++.+....++|++.......+ ....+|...|+.+.|+|. ....+++++-|-.+..||+++
T Consensus 71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q----~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQ----HPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCC----CCcceeeccccccceeeeccC
Confidence 3445554 345688888888889998764432222 335678889999999763 345799999999999999986
Q ss_pred C-eEEEEEecccccceEEEEEeeeCCCCCEEEEEeCCCcEEEEEcCCCCcccccccceeecccCCcEEEEEEeeecCCCC
Q 001416 201 W-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1081)
Q Consensus 201 ~-~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~Dg~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~ 279 (1081)
- ..+..+. .-...-..++| +-.++..++ .+..+.|++||.+.+.. |...+++|...|+.++|+. ....
T Consensus 147 p~~p~ys~~-~w~s~asqVkw--nyk~p~vla-sshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr--~~~s 215 (1081)
T KOG0309|consen 147 PHRPFYSTS-SWRSAASQVKW--NYKDPNVLA-SSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNR--FKYS 215 (1081)
T ss_pred CCcceeeee-cccccCceeee--cccCcchhh-hccCCceEEEeccCCCc-----ceEEecccceeeehHHHhh--hhhh
Confidence 4 4555554 34455677887 466666666 46778899999998863 5667899999999999987 3556
Q ss_pred EEEEEECCCeEEEEECCCCceeeEecCCCccccCCCCeEEEeecCCCC--EEE--EECCc-eEEEeccCCcccccccccc
Q 001416 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILT--CVKDS-HIWAIEHPTYSALTRPLCE 354 (1081)
Q Consensus 280 ~Lvsgs~Dg~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~spd~~--lls--~s~D~-~IWdi~~~~~~~~~~~~~~ 354 (1081)
.+.+.+.||+|+.||......... ....-..++|...+.|=|. ++- .|... .+++.+.. ......
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~-----d~e~n~ 285 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESK-----RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS-----DLEWNV 285 (1081)
T ss_pred hhcccCCCCceeeecccccccccc-----eeccccCcceeccccccCceeEeccccCCeeeeeccccch-----hhhhcc
Confidence 889999999999999865332111 1123345777778888554 331 12111 11221110 011111
Q ss_pred cCCCCCCeEEccCCCccEEEEEEeCC---------CCeEEEEEECCCeEEEEeCCCC
Q 001416 355 LSSLVPPQVLAHHKKLRVYCMVAHSL---------QPHLVATGTNVGVIISEFDPRS 402 (1081)
Q Consensus 355 ~~~~~~~~~l~~~~~~~V~~l~~sp~---------~~~llatgs~dG~Il~iwd~~~ 402 (1081)
.....|+.+|.+|.+ .|....|-.. ....|+|-+.|..+ ++|-+..
T Consensus 286 ~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l-rlWpI~~ 340 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL-RLWPIDS 340 (1081)
T ss_pred ccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCce-EeeeccH
Confidence 223677889999987 6655555432 24678999999995 9997654
No 474
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=98.67 E-value=2.6e-10 Score=124.83 Aligned_cols=219 Identities=8% Similarity=-0.072 Sum_probs=133.6
Q ss_pred CCCccEEEEeeccccc--cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc-cceeeEee
Q 001416 664 AAPQNFQLYSWETFQP--VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA-TGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l--~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~-~~~~w~~~ 735 (1081)
|..+++|.++-.+... ...+..|++.++=.+|.|++.+. ....++|+|||+. ++|.+.+.... ..++|...
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~ 103 (257)
T cd08225 25 SEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDG-GDLMKRINRQRGVLFSEDQI 103 (257)
T ss_pred CceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCC-CcHHHHHHhccCCCCCHHHH
Confidence 4457888876543221 11233455556666788888877 4577999999998 88877654321 12334333
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhh-HhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSR-AVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~r-wv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
..+ +..++.|+.|||...+ ||.++++|++++.. ..+|++|||+...-........ .......
T Consensus 104 ~~~--------~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~--~~~~~~~------ 167 (257)
T cd08225 104 LSW--------FVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY--TCVGTPY------ 167 (257)
T ss_pred HHH--------HHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCccccc--ccCCCcc------
Confidence 222 4467789999999888 99999999999877 7789999997654221110000 0001111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
|.|||..... ....+.||||+|+++++++.|..|+...... +... ....+.
T Consensus 168 --~~ape~~~~~-----------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~--------~~~~~~------- 218 (257)
T cd08225 168 --YLSPEICQNR-----------PYNNKTDIWSLGCVLYELCTLKHPFEGNNLH-QLVL--------KICQGY------- 218 (257)
T ss_pred --ccCHHHHcCC-----------CCCchhhHHHHHHHHHHHHhCCCCCCCccHH-HHHH--------HHhccc-------
Confidence 6677764311 1234579999999999999888876422111 0000 000000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
..++. -.......+++.+|+..+|..||.++.|.+
T Consensus 219 ----~~~~~-----~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 219 ----FAPIS-----PNFSRDLRSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred ----CCCCC-----CCCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 00000 112335668899999999999999988753
No 475
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.66 E-value=8e-05 Score=85.45 Aligned_cols=256 Identities=11% Similarity=0.059 Sum_probs=153.6
Q ss_pred CceEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--EEEEEecCCccce-EEeccCCCeEEEeecCCCCCceeee
Q 001416 12 DKIVKIQLHPTHPWLVTADA----SDHVSVWNWEHR--Q--VIYELKAGGVDQR-RLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 12 ~~V~~lafsp~g~~Lasgs~----dg~I~IWd~~t~--~--~i~~~~~~~~~~v-~~vs~~~~~lasg~~d~~~~~~~~l 82 (1081)
.....++++|++++|.+... +|.|..|++... + .+.+......... ..++++++.|..+.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van----------- 105 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN----------- 105 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-----------
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-----------
Confidence 44567889999999988877 468988888764 3 3444442222222 23388888887753
Q ss_pred cCCceEEEEEeCCeEEEEEcCCCcccccccccc---------ccCCCCCeeecccCCCCCeEEEEEe-cCcEEEEEecCC
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTA---------VSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTM 152 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~IriWdl~~~~~~~~~~~~~---------~~h~~~~V~sl~fsp~g~~~l~s~s-~d~~i~wd~~t~ 152 (1081)
+.+|++.++++............. ..+......++.|+|+++.++++.- .|.+.+|++...
T Consensus 106 ---------y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 106 ---------YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp ---------TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred ---------ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 136777777776632211111111 0122345788999999996666544 455556877654
Q ss_pred C--ccccccc-ccCCCCeeEEEEeeccccCCCCEEEEEE-CCCeEEEEEcC--CCe--EEEEEe---cccc--cceEEEE
Q 001416 153 R--GRDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMI--SWK--LVRRYT---GGHK--GSISCLM 219 (1081)
Q Consensus 153 ~--~~~~~~~-~~~~~~I~~ia~~p~~~sp~~~~l~sgs-~Dg~I~lwd~~--~~~--~~~~~~---~~h~--~~V~~l~ 219 (1081)
. ....... .......+.++| +|+++++++.. .+++|.++++. ++. .+..+. .+.. .....+.
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f-----~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAF-----SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred CceEEEeeccccccCCCCcEEEE-----cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 4 2221122 234567899999 68899876665 67889999997 443 233332 1111 1355565
Q ss_pred EeeeCCCCCEEEEEe-CCCcEEEEEcCCC-CcccccccceeecccCCcEEEEEEeeecCCCCEEEEEE-CCCeEEEEEC-
Q 001416 220 TFMASSGEALLVSGG-SDGLLILWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDT- 295 (1081)
Q Consensus 220 w~~~s~d~~~l~sgs-~Dg~V~vWd~~~~-~~~~~~~~~~~l~~h~~~V~~v~fsp~~~~~~~Lvsgs-~Dg~V~iWDl- 295 (1081)
++|+|++|.++. .+++|.+|+++.. ..+. ....+.........++++| ++++|+++. .++.|.+|++
T Consensus 252 ---ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ---ISPDGRFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFSP---DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ---E-TTSSEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEE
T ss_pred ---EecCCCEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEeC---CCCEEEEEecCCCeEEEEEEe
Confidence 699999877765 5778999999432 2222 1122232334578999999 888888777 5779999976
Q ss_pred -CCCcee
Q 001416 296 -VSFKEL 301 (1081)
Q Consensus 296 -~t~~~~ 301 (1081)
.+|...
T Consensus 323 ~~tG~l~ 329 (345)
T PF10282_consen 323 PDTGKLT 329 (345)
T ss_dssp TTTTEEE
T ss_pred CCCCcEE
Confidence 456543
No 476
>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=98.66 E-value=9e-11 Score=128.77 Aligned_cols=214 Identities=7% Similarity=-0.091 Sum_probs=137.1
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
|+.+++|.++.+... ..+++..|++.++-.+|.|++.+. ..+.++|++||+. ++|.+.+... ..+.....
T Consensus 25 ~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~l~~~~~ 102 (258)
T cd05578 25 KKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLG-GDLRYHLSQK-VKFSEEQV 102 (258)
T ss_pred CcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCC-CCHHHHHHhc-CCcCHHHH
Confidence 445788888765432 234455667777777899999876 5679999999998 8887665432 22322222
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+..|+.|||...+ ||.++++|++++.+-.+|++|||+............ .... .
T Consensus 103 ~~~--------~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~---~~~~--------~ 163 (258)
T cd05578 103 KFW--------ICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTS---TSGT--------P 163 (258)
T ss_pred HHH--------HHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccc---cCCC--------h
Confidence 222 4568889999999888 999999999999999999999998765332211100 0011 1
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCC-CCCCCCCCCcEEeeeecCeEEEEecc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFP-TEQKRPIGPLVVVGVKDGVLWLIDRY 893 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~d~~ 893 (1081)
.|.|||+.... ..+.++|+||+|++++++++|..|+...... .++... . ....
T Consensus 164 ~y~~PE~~~~~-----------~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~---~----~~~~-------- 217 (258)
T cd05578 164 GYMAPEVLCRQ-----------GYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRA---K----QETA-------- 217 (258)
T ss_pred hhcCHHHHccc-----------CCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHH---H----hccc--------
Confidence 25677764321 1234579999999999999988887532210 000000 0 0000
Q ss_pred ccccccCCCCcccceecccccccHHHHHhhhcccCcccHH
Q 001416 894 MCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHD 933 (1081)
Q Consensus 894 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 933 (1081)
...+| ........++++.||..+|..||.+.
T Consensus 218 --~~~~~-------~~~~~~~~~~i~~~l~~~p~~R~~~~ 248 (258)
T cd05578 218 --DVLYP-------ATWSTEAIDAINKLLERDPQKRLGDN 248 (258)
T ss_pred --cccCc-------ccCcHHHHHHHHHHccCChhHcCCcc
Confidence 00001 11235566899999999999999994
No 477
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=98.66 E-value=2.6e-10 Score=132.20 Aligned_cols=117 Identities=5% Similarity=-0.048 Sum_probs=85.5
Q ss_pred CCCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..++||.+..... .....+..|.+.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.+.. .+....
T Consensus 25 ~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~-g~L~~~l~~~~-~l~~~~ 102 (364)
T cd05599 25 TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPG-GDMMTLLMKKD-TFTEEE 102 (364)
T ss_pred CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCC-cHHHHHHHHcC-CCCHHH
Confidence 456689999876432 1122233455666677799998886 5678999999999 99988765421 122211
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeee
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAV 789 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~ 789 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++..-.+|++|||+...
T Consensus 103 ~~~~--------~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 150 (364)
T cd05599 103 TRFY--------IAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTG 150 (364)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeeccccee
Confidence 1112 4578899999999988 999999999999999999999998754
No 478
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=3.2e-06 Score=100.23 Aligned_cols=170 Identities=14% Similarity=0.056 Sum_probs=99.0
Q ss_pred eecccCCCCCeEEEEEecCc---EEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC-CC--eEEEEE
Q 001416 124 ASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLS 197 (1081)
Q Consensus 124 ~sl~fsp~g~~~l~s~s~d~---~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~-Dg--~I~lwd 197 (1081)
....|+|||+.++++...++ +.++|+.+++...+ ..+.......+| +|+++.++..+. ++ .|.++|
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l---t~~~~~~~~p~w-----SpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI---TRHRAIDTEPSW-----HPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC---ccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEE
Confidence 45689999997776655544 44578877653332 233445567889 789998877664 33 466677
Q ss_pred cCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeC-CC--cEEEEEcCCCCcccccccceeecccCCcEEEEEEeee
Q 001416 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1081)
Q Consensus 198 ~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~-Dg--~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 274 (1081)
+.+++.......++ ...... ++|+|+.++..+. ++ .|.++|+.+++... +... .......|+|
T Consensus 337 l~~g~~~~Lt~~g~--~~~~~~---~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-------lt~~-~~d~~ps~sp- 402 (448)
T PRK04792 337 LASGKVSRLTFEGE--QNLGGS---ITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-------LTST-RLDESPSVAP- 402 (448)
T ss_pred CCCCCEEEEecCCC--CCcCee---ECCCCCEEEEEEecCCceEEEEEECCCCCeEE-------ccCC-CCCCCceECC-
Confidence 77766543322122 233445 4899998877665 34 34556776664211 1111 1122347999
Q ss_pred cCCCCEEEEEEC-CC--eEEEEECCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 275 MGGSPQLITIGA-DK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 275 ~~~~~~Lvsgs~-Dg--~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
++.+|+..+. ++ .+.+++.. ++..+.+ ..+...+...+|+|
T Consensus 403 --dG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l------~~~~g~~~~p~Wsp 446 (448)
T PRK04792 403 --NGTMVIYSTTYQGKQVLAAVSID-GRFKARL------PAGQGEVKSPAWSP 446 (448)
T ss_pred --CCCEEEEEEecCCceEEEEEECC-CCceEEC------cCCCCCcCCCccCC
Confidence 7877766554 33 36677764 4444443 33344455667776
No 479
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=98.65 E-value=2.9e-10 Score=140.73 Aligned_cols=235 Identities=6% Similarity=-0.196 Sum_probs=138.2
Q ss_pred CCCccEEEEeeccc---cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccc----c---
Q 001416 664 AAPQNFQLYSWETF---QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYA----T--- 728 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~---~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~----~--- 728 (1081)
|+.+++|.+..+.. ....+...|++.+.-.+|.|++.+. ....+++++||+. |+|.+++.+-- .
T Consensus 27 g~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eG-GSL~~lL~s~~~~~~l~e~ 105 (932)
T PRK13184 27 SRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEG-YTLKSLLKSVWQKESLSKE 105 (932)
T ss_pred CcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCC-CCHHHHHHHhhhccccchh
Confidence 55689998764321 1223355577777788899999887 3578999999999 89988765310 0
Q ss_pred ---ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhccc----
Q 001416 729 ---GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRI---- 800 (1081)
Q Consensus 729 ---~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~---- 800 (1081)
...+.....+ +..+.+|+.|||...+ |+.+|++|++++..-.+|++|||+......+.......
T Consensus 106 ~~~~lsv~~iL~I--------~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~ 177 (932)
T PRK13184 106 LAEKTSVGAFLSI--------FHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDE 177 (932)
T ss_pred hhcccCHHHHHHH--------HHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcceeccccccccccccccc
Confidence 0011100111 3467789999999888 99999999999999999999999986531111000000
Q ss_pred --ccCCcch--hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCC
Q 001416 801 --KLRPPML--QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGP 876 (1081)
Q Consensus 801 --~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 876 (1081)
...+.+. .-+.-...+.|||+.. |...+.+.||||+|++++|+++|..|+...... . .
T Consensus 178 ~~s~~s~~t~~g~~vGT~~YmAPE~l~-----------g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~--k-----i 239 (932)
T PRK13184 178 RNICYSSMTIPGKIVGTPDYMAPERLL-----------GVPASESTDIYALGVILYQMLTLSFPYRRKKGR--K-----I 239 (932)
T ss_pred ccccccccccCCCCCCCCCCCCHHHhc-----------CCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchh--h-----h
Confidence 0000000 0000112356777642 222345579999999999999998887531110 0 0
Q ss_pred cEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcc-cHHHHHHHHHh
Q 001416 877 LVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGRE-HHDDLAQFMLG 941 (1081)
Q Consensus 877 ~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~i~~~l~~ 941 (1081)
.+....... ...+. .-..+....+++..|+..+|..|+ ..+.+.+-|+.
T Consensus 240 ~~~~~i~~P---------------~~~~p-~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~ 289 (932)
T PRK13184 240 SYRDVILSP---------------IEVAP-YREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEP 289 (932)
T ss_pred hhhhhccCh---------------hhccc-cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 000000000 00000 002334456788999999999995 55566665554
No 480
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=98.65 E-value=3.8e-10 Score=130.86 Aligned_cols=173 Identities=9% Similarity=-0.074 Sum_probs=114.7
Q ss_pred CCCCccEEEEeecccc---ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.++..... .......|.+.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.+......|..
T Consensus 67 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~g-g~L~~~l~~~~l~~~~~~ 145 (370)
T cd05596 67 SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPG-GDLVNLMSNYDIPEKWAR 145 (370)
T ss_pred CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCC-CcHHHHHHhcCCCHHHHH
Confidence 3556899988754321 111123355556667899998887 3568999999999 999887655333333332
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
. + +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ..... .
T Consensus 146 ~--~--------~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~-~~~~g--------t 206 (370)
T cd05596 146 F--Y--------TAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRC-DTAVG--------T 206 (370)
T ss_pred H--H--------HHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccC-CCCCC--------C
Confidence 2 1 4578899999999998 999999999999999999999998754211100000 00001 1
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+...... +..-+.+.||||+|++++|+++|..||.
T Consensus 207 ~~y~aPE~~~~~~~-------~~~~~~~~DiwSlGvilyelltG~~Pf~ 248 (370)
T cd05596 207 PDYISPEVLKSQGG-------DGYYGRECDWWSVGVFLYEMLVGDTPFY 248 (370)
T ss_pred cCeECHHHhccCCC-------CCCCCCceeeeehhHHHHHHHhCCCCcC
Confidence 12778887642110 1112345799999999999999988875
No 481
>PHA03209 serine/threonine kinase US3; Provisional
Probab=98.65 E-value=1.8e-10 Score=133.09 Aligned_cols=146 Identities=8% Similarity=-0.090 Sum_probs=101.7
Q ss_pred CCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEeccCceEEEeeeCCccccc
Q 001416 684 LPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAID 758 (1081)
Q Consensus 684 ~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh 758 (1081)
..|.+.+.-.+|.|++.+. ....++|++||. |.|.+.+.+....+.|.....+ +..++.|+.|||
T Consensus 105 ~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~--~~l~~~l~~~~~~~~~~~~~~i--------~~qi~~aL~~LH 174 (357)
T PHA03209 105 LIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS--SDLYTYLTKRSRPLPIDQALII--------EKQILEGLRYLH 174 (357)
T ss_pred HHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC--CcHHHHHHhccCCCCHHHHHHH--------HHHHHHHHHHHH
Confidence 3466667777899999886 456889999995 5676666543334444443333 567889999999
Q ss_pred hhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCC
Q 001416 759 VETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDD 837 (1081)
Q Consensus 759 ~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 837 (1081)
...| |+.+|++|++++....+|++|||+..+....... ..... .-.|.|||+.... .
T Consensus 175 ~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~---~~~~g--------t~~y~aPE~~~~~-----------~ 232 (357)
T PHA03209 175 AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAF---LGLAG--------TVETNAPEVLARD-----------K 232 (357)
T ss_pred HCCeecCCCCHHHEEECCCCCEEEecCccccccccCccc---ccccc--------cccccCCeecCCC-----------C
Confidence 9988 9999999999999999999999987642211100 00001 1137888886421 1
Q ss_pred CCCcccccccceeeeeecCCccee
Q 001416 838 SMMPKDIEERKVNEIAVGGGGVAV 861 (1081)
Q Consensus 838 ~~~~~dvys~~i~~~~~~~~~~~~ 861 (1081)
-+.+.||||+|++++|++.++.++
T Consensus 233 ~~~~~DiwSlGvvl~ell~~~~~~ 256 (357)
T PHA03209 233 YNSKADIWSAGIVLFEMLAYPSTI 256 (357)
T ss_pred CCchhhHHHHHHHHHHHHHcCCcc
Confidence 234579999999999988766554
No 482
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=98.65 E-value=6.9e-10 Score=124.34 Aligned_cols=169 Identities=8% Similarity=-0.082 Sum_probs=113.0
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----e--eeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----Y--QHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~--~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|..+++|.+...... ....+..|+..++-..|.|++.+. . ...++|+|||+ +.|.+.+......+.+..
T Consensus 30 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~--~~L~~~~~~~~~~l~~~~ 107 (293)
T cd07843 30 GEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE--HDLKSLMETMKQPFLQSE 107 (293)
T ss_pred CcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC--cCHHHHHHhccCCCCHHH
Confidence 455788888765433 112234466677778899999886 2 67899999997 477766544222233333
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ ||.++++|++++.+..+|++|||+...-...... . ..... .
T Consensus 108 ~~~i--------~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~-~-~~~~~--------~ 169 (293)
T cd07843 108 VKCL--------MLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKP-Y-TQLVV--------T 169 (293)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccc-c-ccccc--------c
Confidence 3333 5678899999999998 9999999999999999999999977642211000 0 00001 1
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||...... ..+.+.|+||+|+++++++.|..++.
T Consensus 170 ~~~~aPE~~~~~~----------~~~~~~Di~slG~~l~~l~~g~~~f~ 208 (293)
T cd07843 170 LWYRAPELLLGAK----------EYSTAIDMWSVGCIFAELLTKKPLFP 208 (293)
T ss_pred ccccCchhhcCCc----------cccchhhHHHHHHHHHHHHhCCCCCC
Confidence 2277888653110 01344799999999999999877775
No 483
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=4.1e-06 Score=99.36 Aligned_cols=171 Identities=13% Similarity=0.008 Sum_probs=100.2
Q ss_pred eeecccCCCCCeEEEEEecCc---EEEEEecCCCcccccccccCCCCeeEEEEeeccccCCCCEEEEEEC-CC--eEEEE
Q 001416 123 FASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVL 196 (1081)
Q Consensus 123 V~sl~fsp~g~~~l~s~s~d~---~i~wd~~t~~~~~~~~~~~~~~~I~~ia~~p~~~sp~~~~l~sgs~-Dg--~I~lw 196 (1081)
+....|+|||+.++++...++ +.+||..+++...+ ..+........| +|+++.++..++ +| .|.++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---t~~~~~~~~~~~-----spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV---TNHPAIDTEPFW-----GKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc---ccCCCCcCCeEE-----CCCCCEEEEEECCCCCceEEEE
Confidence 345789999987766654433 44678887653332 223344556788 789998877664 33 57777
Q ss_pred EcCCCeEEEEEecccccceEEEEEeeeCCCCCEEEEEeCC-C--cEEEEEcCCCCcccccccceeecccCCcEEEEEEee
Q 001416 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-G--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1081)
Q Consensus 197 d~~~~~~~~~~~~~h~~~V~~l~w~~~s~d~~~l~sgs~D-g--~V~vWd~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 273 (1081)
|+.+++.......+ ....... ++|+++.++..+.+ + .|.+||+.+++... +. +........|+|
T Consensus 317 d~~~g~~~~lt~~~--~~~~~~~---~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-------lt-~~~~~~~p~~sp 383 (430)
T PRK00178 317 NVNGGRAERVTFVG--NYNARPR---LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-------LT-DTSLDESPSVAP 383 (430)
T ss_pred ECCCCCEEEeecCC--CCccceE---ECCCCCEEEEEEccCCceEEEEEECCCCCEEE-------cc-CCCCCCCceECC
Confidence 88777644332212 2223344 48999998877654 3 47888988765211 11 111223458999
Q ss_pred ecCCCCEEEEEECC---CeEEEEECCCCceeeEecCCCccccCCCCeEEEeecC
Q 001416 274 VMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1081)
Q Consensus 274 ~~~~~~~Lvsgs~D---g~V~iWDl~t~~~~~~~~~~~~~~~h~~~v~~v~~sp 324 (1081)
++.+++..+.+ ..|.++++... ..+.+ ..+...+...+|+|
T Consensus 384 ---dg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l------~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 ---NGTMLIYATRQQGRGVLMLVSINGR-VRLPL------PTAQGEVREPSWSP 427 (430)
T ss_pred ---CCCEEEEEEecCCceEEEEEECCCC-ceEEC------cCCCCCcCCCccCC
Confidence 88888766643 34667777533 33332 22333445556665
No 484
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=98.65 E-value=2.6e-10 Score=127.33 Aligned_cols=168 Identities=9% Similarity=-0.051 Sum_probs=111.4
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccc-ccceeeEe
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPY-ATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~-~~~~~w~~ 734 (1081)
+..+++|.+......- ...+..|++.++-.+|.+++.+. ....++|++|++. |+|.+.+... ...+.+..
T Consensus 25 ~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g-~~L~~~l~~~~~~~l~~~~ 103 (285)
T cd05630 25 GKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG-GDLKFHIYHMGEAGFEEGR 103 (285)
T ss_pred CceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCC-CcHHHHHHHhcccCCCHHH
Confidence 4567888876543221 12234466666777889998886 3678999999998 8888765321 11122222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.++++|++++....++++|||+............. ....
T Consensus 104 ~~~~--------~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~---~g~~------- 165 (285)
T cd05630 104 AVFY--------AAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR---VGTV------- 165 (285)
T ss_pred HHHH--------HHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCC---CCCc-------
Confidence 2222 4567889999999888 9999999999999999999999987542211110000 0111
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+.... ..+.+.||||+|+++++++.|..||.
T Consensus 166 -~y~aPE~~~~~-----------~~~~~~DiwslG~~l~~l~~g~~Pf~ 202 (285)
T cd05630 166 -GYMAPEVVKNE-----------RYTFSPDWWALGCLLYEMIAGQSPFQ 202 (285)
T ss_pred -cccChHHHcCC-----------CCCCccccHHHHHHHHHHHhCCCCCC
Confidence 26788875321 12334799999999999999888875
No 485
>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho
Probab=98.65 E-value=4.9e-10 Score=123.52 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=110.2
Q ss_pred CCCccEEEEeec-----cccccCCCCCCcceeeecccCceEEEe-------eeeEEEEEecCccccccccccccccccee
Q 001416 664 AAPQNFQLYSWE-----TFQPVGGLLPQPEWTAWDQTVEYCAFA-------YQHYIVISSLCPQYRYLGDVAIPYATGAV 731 (1081)
Q Consensus 664 ~~~~~i~~~~~~-----~~~l~~~~~~~~k~v~w~~~~~~~~~~-------~~~~~~v~~y~~~~gsl~d~~~~~~~~~~ 731 (1081)
|..+++|.+..+ ..+....+..|++.+.-.+|.|++.+. ....++++||++. ++|.+.+.+. ..+.
T Consensus 27 ~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~-~~L~~~~~~~-~~l~ 104 (264)
T cd06653 27 GRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPG-GSIKDQLKAY-GALT 104 (264)
T ss_pred CCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCC-CcHHHHHHHc-CCCC
Confidence 445788776432 122223344566666667899998877 1246889999998 8888765431 1122
Q ss_pred eEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcc-cccCCcchhh
Q 001416 732 WHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDR-IKLRPPMLQV 809 (1081)
Q Consensus 732 w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~-~~~~~~~~~~ 809 (1081)
+.....+ +..++.|+.|||...+ |+.++++|++++....+|++|||+............. ..+....
T Consensus 105 ~~~~~~~--------~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~--- 173 (264)
T cd06653 105 ENVTRRY--------TRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTP--- 173 (264)
T ss_pred HHHHHHH--------HHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcc---
Confidence 2222222 4578899999999988 9999999999999999999999987642111000000 0011112
Q ss_pred hhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 810 VRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 810 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+.... ..+.+.|+||+|+++++++.|..|+.
T Consensus 174 -----~y~aPE~~~~~-----------~~~~~~Di~slG~il~~l~~g~~p~~ 210 (264)
T cd06653 174 -----YWMSPEVISGE-----------GYGRKADVWSVACTVVEMLTEKPPWA 210 (264)
T ss_pred -----cccCHhhhcCC-----------CCCccccHHHHHHHHHHHHhCCCCCC
Confidence 26788875321 12345799999999999999888875
No 486
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=98.64 E-value=1.7e-10 Score=127.95 Aligned_cols=225 Identities=11% Similarity=-0.012 Sum_probs=139.5
Q ss_pred CCCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCccccccccccccccc--------
Q 001416 663 EAAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYAT-------- 728 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~-------- 728 (1081)
....+++|.++-+... .......|.+.+.-.+|.|++.+. ....++|+|||+. |+|.+.+.....
T Consensus 34 ~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~~~~~~~~~~~~ 112 (275)
T cd05046 34 GETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDL-GDLKQFLRATKSKDEKLKPP 112 (275)
T ss_pred CcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCC-CcHHHHHHhccccccccccc
Confidence 3344777777654433 233344566666667788888877 2357999999998 898876543210
Q ss_pred ceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcch
Q 001416 729 GAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPML 807 (1081)
Q Consensus 729 ~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~ 807 (1081)
.+.|.....+ +..+.+|+.|||...+ |+.+++.|++++.+-.+|++|||+.............. ...++.
T Consensus 113 ~l~~~~~~~~--------~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 183 (275)
T cd05046 113 PLSTKQKVAL--------CTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRN-ALIPLR 183 (275)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccccccCcccccccCC-ceeEEe
Confidence 2444444444 5678889999999988 99999999999999999999999864321110000000 001111
Q ss_pred hhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCC-cceeeecCCCCCCCCCCCCcEEeeeecCe
Q 001416 808 QVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGG-GVAVAVTRFPTEQKRPIGPLVVVGVKDGV 886 (1081)
Q Consensus 808 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 886 (1081)
|.|||.... .....++||||+|+++++++.+ ..|+. ..+.+. +.......
T Consensus 184 --------y~~PE~~~~-----------~~~~~~~Di~slG~~l~~l~~~~~~p~~--~~~~~~-------~~~~~~~~- 234 (275)
T cd05046 184 --------WLAPEAVQE-----------DDFSTKSDVWSFGVLMWEVFTQGELPFY--GLSDEE-------VLNRLQAG- 234 (275)
T ss_pred --------ecChhhhcc-----------CCCCchhhHHHHHHHHHHHHhCCCCCcc--ccchHH-------HHHHHHcC-
Confidence 567775421 1123457999999999988874 33442 111000 00000000
Q ss_pred EEEEeccccccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHHHHH
Q 001416 887 LWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML 940 (1081)
Q Consensus 887 ~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~l~ 940 (1081)
.+..+ ....++....+++..|+..+|..||+...+...|.
T Consensus 235 -------------~~~~~-~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~ 274 (275)
T cd05046 235 -------------KLELP-VPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG 274 (275)
T ss_pred -------------CcCCC-CCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence 00000 01135567789999999999999999999988775
No 487
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=98.64 E-value=1.9e-10 Score=130.49 Aligned_cols=217 Identities=6% Similarity=-0.104 Sum_probs=128.7
Q ss_pred CCCCccEEEEeeccccc---cCCCCCCcceee-ecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 663 EAAPQNFQLYSWETFQP---VGGLLPQPEWTA-WDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l---~~~~~~~~k~v~-w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
.|..+++|.+..+.... ......|.+.+. -.+|.+++.+. ..+.++|+|||+. |+|.+.+.. ...+.+.
T Consensus 19 ~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~-g~L~~~i~~-~~~~~~~ 96 (316)
T cd05620 19 KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG-GDLMFHIQD-KGRFDLY 96 (316)
T ss_pred CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC-CcHHHHHHH-cCCCCHH
Confidence 35568898887643211 111222222222 23677887765 4578999999998 888755433 1122222
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..+..|+.|||...+ |+.+|++|++++....+|++|||+........... .......
T Consensus 97 ~~~~~--------~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~--~~~~gt~------ 160 (316)
T cd05620 97 RATFY--------AAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRA--STFCGTP------ 160 (316)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCce--eccCCCc------
Confidence 21122 4578899999999888 99999999999999999999999864211000000 0001111
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEec
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDR 892 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 892 (1081)
.|.|||+.... .-+.+.||||+|++++|+++|..|+...... +... .....
T Consensus 161 --~y~aPE~~~~~-----------~~~~~~DiwslGvil~el~~g~~Pf~~~~~~--~~~~-------~~~~~------- 211 (316)
T cd05620 161 --DYIAPEILQGL-----------KYTFSVDWWSFGVLLYEMLIGQSPFHGDDED--ELFE-------SIRVD------- 211 (316)
T ss_pred --CccCHHHHcCC-----------CCCcccchhhhHHHHHHHHhCCCCCCCCCHH--HHHH-------HHHhC-------
Confidence 27788876321 1234579999999999999988887422110 0000 00000
Q ss_pred cccccccCCCCcccceecccccccHHHHHhhhcccCcccH-HHHH
Q 001416 893 YMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHH-DDLA 936 (1081)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~i~ 936 (1081)
.+.+...+.....++++.|+..+|..|+.. +.++
T Consensus 212 ----------~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~ 246 (316)
T cd05620 212 ----------TPHYPRWITKESKDILEKLFERDPTRRLGVVGNIR 246 (316)
T ss_pred ----------CCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence 000011133455689999999999999875 3443
No 488
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=98.64 E-value=3.2e-10 Score=129.07 Aligned_cols=168 Identities=5% Similarity=-0.081 Sum_probs=104.7
Q ss_pred CCCccEEEEeecccc---ccCCCCCCcceeeecccC-ceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQ---PVGGLLPQPEWTAWDQTV-EYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~---l~~~~~~~~k~v~w~~~~-~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
++.+++|.+.++... -......|.+.+.=..|. +++.+. ..+.++|+|||+. |+|.+.+.. ...+.+..
T Consensus 25 ~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~-g~L~~~~~~-~~~~~~~~ 102 (324)
T cd05587 25 DELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNG-GDLMYHIQQ-VGKFKEPH 102 (324)
T ss_pred CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCC-CcHHHHHHH-cCCCCHHH
Confidence 445899988764321 111222333333333343 344433 3578999999998 888766543 11222222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++..-.+|++|||+......... ... ... -.
T Consensus 103 ~~~~--------~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~-~~~-~~~--------gt 164 (324)
T cd05587 103 AVFY--------AAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK-TTR-TFC--------GT 164 (324)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC-cee-eec--------CC
Confidence 2222 4578899999999998 999999999999999999999998642111000 000 000 11
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... ..+.+.||||+|++++++++|..||.
T Consensus 165 ~~y~aPE~~~~~-----------~~~~~~DiwslGvil~elltG~~pf~ 202 (324)
T cd05587 165 PDYIAPEIIAYQ-----------PYGKSVDWWAFGVLLYEMLAGQPPFD 202 (324)
T ss_pred ccccChhhhcCC-----------CCCcccchhhhHHHHHHHHhCCCCCC
Confidence 226788875321 12345799999999999999887774
No 489
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=98.64 E-value=2.2e-10 Score=127.49 Aligned_cols=169 Identities=7% Similarity=-0.095 Sum_probs=113.1
Q ss_pred CCCccEEEEeecccc--ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETFQ--PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~--l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
|..+++|.++-.... ...++..|++.++-.+|.|++.+. ....++|++||+. +|.+.+......+.+....
T Consensus 24 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~--~l~~~l~~~~~~~~~~~~~ 101 (283)
T cd05118 24 GEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDT--DLYKLIKDRQRGLPESLIK 101 (283)
T ss_pred CcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCC--CHHHHHHhhcccCCHHHHH
Confidence 445677776654433 222344466666666788988877 4678999999974 6666555432334444433
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..++.|+.|||...+ ||.++.+|++++....+|++|||+...-.... ... ... ....+
T Consensus 102 ~~--------~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~-~~~-----~~~----~~~~~ 163 (283)
T cd05118 102 SY--------LYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV-RPY-----THY----VVTRW 163 (283)
T ss_pred HH--------HHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc-ccc-----cCc----cCccc
Confidence 33 5678889999999999 99999999999999999999999876533221 000 000 01223
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||.... +...+.+.|+||+|++++++++|..++.
T Consensus 164 ~~~PE~~~~----------~~~~~~~~Di~slG~~l~~l~tg~~~~~ 200 (283)
T cd05118 164 YRAPELLLG----------DKGYSTPVDIWSVGCIFAELLSRRPLFP 200 (283)
T ss_pred ccCcHHHhc----------CCCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence 677887531 1123445799999999999999877764
No 490
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=98.64 E-value=4.8e-10 Score=123.91 Aligned_cols=186 Identities=8% Similarity=-0.077 Sum_probs=121.7
Q ss_pred ccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhh
Q 001416 694 QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEE 767 (1081)
Q Consensus 694 ~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~ 767 (1081)
+|.|++.+. ....++|+|||+. |+|.+.+.+. ..+.|.....+ +.++++|+.|||...+ |+.++
T Consensus 67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~-~~L~~~l~~~-~~l~~~~~~~~--------~~qi~~~l~~lH~~~i~H~dl~ 136 (267)
T PHA03390 67 DNPNFIKLYYSVTTLKGHVLIMDYIKD-GDLFDLLKKE-GKLSEAEVKKI--------IRQLVEALNDLHKHNIIHNDIK 136 (267)
T ss_pred cCCCEEEEEEEEecCCeeEEEEEcCCC-CcHHHHHHhc-CCCCHHHHHHH--------HHHHHHHHHHHHhCCeeeCCCC
Confidence 588998887 4578999999998 8998766542 24555554444 6688999999999988 99999
Q ss_pred hhhHHhhhhH-hhhccceeeeeecccchhhhcccccCCcchhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccc
Q 001416 768 MKLKEVQSRA-VAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEE 846 (1081)
Q Consensus 768 s~nc~vd~rw-v~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys 846 (1081)
++|++++..- .++++|||+-......... .. ...+.|||+.... ....+.||||
T Consensus 137 p~nil~~~~~~~~~l~dfg~~~~~~~~~~~------~~--------~~~y~aPE~~~~~-----------~~~~~~Dvws 191 (267)
T PHA03390 137 LENVLYDRAKDRIYLCDYGLCKIIGTPSCY------DG--------TLDYFSPEKIKGH-----------NYDVSFDWWA 191 (267)
T ss_pred HHHEEEeCCCCeEEEecCccceecCCCccC------CC--------CCcccChhhhcCC-----------CCCchhhHHH
Confidence 9999999988 8999999986543221110 01 1126788875321 1223479999
Q ss_pred cceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccccccccCCCCcccceecccccccHHHHHhhhcc
Q 001416 847 RKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASR 926 (1081)
Q Consensus 847 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1081)
+|+++++++.|..|+....- +... ....... . ..++ +..+ .......+++..|+..+|
T Consensus 192 lG~il~~l~~g~~p~~~~~~--~~~~------~~~~~~~----------~-~~~~--~~~~-~~~~~~~~li~~~l~~~p 249 (267)
T PHA03390 192 VGVLTYELLTGKHPFKEDED--EELD------LESLLKR----------Q-QKKL--PFIK-NVSKNANDFVQSMLKYNI 249 (267)
T ss_pred HHHHHHHHHHCCCCCCCCCc--chhh------HHHHHHh----------h-cccC--Cccc-ccCHHHHHHHHHHhccCh
Confidence 99999999999888752111 0000 0000000 0 0000 0000 344556788999999999
Q ss_pred cCccc-HHHHH
Q 001416 927 LGREH-HDDLA 936 (1081)
Q Consensus 927 ~~r~~-~~~i~ 936 (1081)
..||. ++.|.
T Consensus 250 ~~R~~~~~~~l 260 (267)
T PHA03390 250 NYRLTNYNEII 260 (267)
T ss_pred hhCCchHHHHh
Confidence 99984 56654
No 491
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=98.64 E-value=6.2e-10 Score=124.54 Aligned_cols=169 Identities=8% Similarity=-0.021 Sum_probs=110.4
Q ss_pred CCCccEEEEeecccc-ccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETFQ-PVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~-l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
|+.++||.+.-+... .......|++.++-.+|.|++.+. ....++|+||++. +|.+.+......+.+..-..
T Consensus 30 ~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~--~L~~~~~~~~~~~~~~~~~~ 107 (291)
T cd07844 30 GQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDT--DLKQYMDDCGGGLSMHNVRL 107 (291)
T ss_pred CcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCC--CHHHHHHhCCCCCCHHHHHH
Confidence 455888887654322 122234577777778899999987 4578999999984 67665543222222222222
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..+++|+.|||...+ |+.++++|++++....+|++|||+......... .. .... ....|
T Consensus 108 ~--------~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~-~~----~~~~-----~~~~~ 169 (291)
T cd07844 108 F--------LFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK-TY----SNEV-----VTLWY 169 (291)
T ss_pred H--------HHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCc-cc----cccc-----ccccc
Confidence 2 4467889999999998 999999999999999999999998653211100 00 0000 01226
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|||+.... ...+.+.||||+|++++++++|..++.
T Consensus 170 ~aPE~~~~~----------~~~~~~~Dv~slG~il~~l~~g~~~~~ 205 (291)
T cd07844 170 RPPDVLLGS----------TEYSTSLDMWGVGCIFYEMATGRPLFP 205 (291)
T ss_pred CCcHHhhcC----------cccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 788865321 011234799999999999999887774
No 492
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=98.63 E-value=7.3e-10 Score=128.15 Aligned_cols=178 Identities=8% Similarity=-0.054 Sum_probs=112.5
Q ss_pred CCCCccEEEEeecc---ccccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 663 EAAPQNFQLYSWET---FQPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~---~~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
.|..+++|.+.... .+....+..|.+.+.-.+|.+++.+. ..+.++|+|||+. |+|.+.+.+. ..+....
T Consensus 25 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~g-g~L~~~l~~~-~~l~~~~ 102 (360)
T cd05627 25 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPG-GDMMTLLMKK-DTLSEEA 102 (360)
T ss_pred CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC-ccHHHHHHhc-CCCCHHH
Confidence 35568899886432 12223344455566667888998876 4578999999999 8988776542 1222222
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhh-----------c----
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQ-----------D---- 798 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~-----------~---- 798 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+...-....... .
T Consensus 103 ~~~~--------~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (360)
T cd05627 103 TQFY--------IAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQ 174 (360)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCccccccc
Confidence 2222 5577889999999888 99999999999999999999999864311000000 0
Q ss_pred ------ccc----cCCcc-hhhhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 799 ------RIK----LRPPM-LQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 799 ------~~~----~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
... ..... ...+ -.-.|.|||+... ...+.+.||||+|++++|+++|..||.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~-gt~~Y~APE~~~~-----------~~~~~~~DiwSlGvilyel~tG~~Pf~ 237 (360)
T cd05627 175 NMNSKRKAETWKKNRRQLAYSTV-GTPDYIAPEVFMQ-----------TGYNKLCDWWSLGVIMYEMLIGYPPFC 237 (360)
T ss_pred ccccccccccccccccccccccC-CCccccCHHHHcC-----------CCCCCcceeccccceeeecccCCCCCC
Confidence 000 00000 0000 0112667777531 112345799999999999999988875
No 493
>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi
Probab=98.63 E-value=4.3e-10 Score=125.10 Aligned_cols=167 Identities=8% Similarity=-0.112 Sum_probs=107.0
Q ss_pred CCCccEEEEeeccccccCC------CCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceee
Q 001416 664 AAPQNFQLYSWETFQPVGG------LLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVW 732 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~~~------~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w 732 (1081)
|..+++|.+..+....... .....+.+...+|.+++.+. ....++|+|||+. |.|.+.+.. ...+.|
T Consensus 19 ~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~-~~L~~~i~~-~~~l~~ 96 (279)
T cd05633 19 GKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNG-GDLHYHLSQ-HGVFSE 96 (279)
T ss_pred CcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCC-CCHHHHHHh-cCCCCH
Confidence 5558888876654332211 01112233445678887765 3578999999998 888765543 112333
Q ss_pred EeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhh
Q 001416 733 HRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVR 811 (1081)
Q Consensus 733 ~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1081)
.....+ +..+++|+.|||...+ |+.+|++|++++....+|++|||+.......... .......
T Consensus 97 ~~~~~i--------~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~---- 160 (279)
T cd05633 97 KEMRFY--------ATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH----ASVGTHG---- 160 (279)
T ss_pred HHHHHH--------HHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCcc----CcCCCcC----
Confidence 322223 4577899999999988 9999999999999999999999986421111000 0011112
Q ss_pred hhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 812 LASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 812 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|+|||.... +...+.+.||||+|++++++++|..|+.
T Consensus 161 ----y~aPE~~~~----------~~~~~~~~Di~slG~~l~~l~~g~~pf~ 197 (279)
T cd05633 161 ----YMAPEVLQK----------GTAYDSSADWFSLGCMLFKLLRGHSPFR 197 (279)
T ss_pred ----ccCHHHhcC----------CCCCCchhhhHHHHHHHHHHHhCCCCcC
Confidence 678886421 1112334799999999999999888875
No 494
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=98.63 E-value=1.1e-10 Score=131.16 Aligned_cols=224 Identities=7% Similarity=-0.077 Sum_probs=130.7
Q ss_pred CCCccEEEEeecccccc-CCCCCCcceeeec-ccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 664 AAPQNFQLYSWETFQPV-GGLLPQPEWTAWD-QTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l~-~~~~~~~k~v~w~-~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
|+.+++|.+........ .++..|.+.+.-. +|.|++.+. ..+.+++++|++ +.|.++.......+.+....
T Consensus 40 ~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~--~~l~~l~~~~~~~l~~~~~~ 117 (296)
T cd06618 40 GHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS--TCLDKLLKRIQGPIPEDILG 117 (296)
T ss_pred CeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC--cCHHHHHHHhcCCCCHHHHH
Confidence 56688888865432211 1123333322222 477777766 457899999986 35555543322234444333
Q ss_pred eeEeccCceEEEeeeCCccccchh-hh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVE-TM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s-~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
.+ +..+++||.|||.. .+ |+.++++|++++..-.+|++|||+...-........ .....
T Consensus 118 ~i--------~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~---~~~~~-------- 178 (296)
T cd06618 118 KM--------TVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTR---SAGCA-------- 178 (296)
T ss_pred HH--------HHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcccC---CCCCc--------
Confidence 34 67889999999974 56 999999999999999999999998643111000000 00111
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceeeecCCCCCCCCCCCCcEEeeeecCeEEEEeccc
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYM 894 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~ 894 (1081)
.|.|||....... . + ..+.+.||||||+++++++.|..|+.....+.+.... . ....
T Consensus 179 ~y~aPE~~~~~~~--~----~-~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~-----~--~~~~--------- 235 (296)
T cd06618 179 AYMAPERIDPPDP--N----P-KYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTK-----I--LQEE--------- 235 (296)
T ss_pred cccCHhhcCCCCC--c----c-ccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHH-----H--hcCC---------
Confidence 2678887532110 0 0 1234579999999999999988777421110000000 0 0000
Q ss_pred cccccCCCCcccceecccccccHHHHHhhhcccCcccHHHHHH
Q 001416 895 CAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQ 937 (1081)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 937 (1081)
...+.. ...+.....+++..|+..+|..||+++.|..
T Consensus 236 ---~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~ 272 (296)
T cd06618 236 ---PPSLPP---NEGFSPDFCSFVDLCLTKDHRKRPKYRELLQ 272 (296)
T ss_pred ---CCCCCC---CCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 000000 0023455679999999999999999988854
No 495
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=98.63 E-value=5.7e-10 Score=127.14 Aligned_cols=169 Identities=5% Similarity=-0.124 Sum_probs=110.5
Q ss_pred CCCCccEEEEeeccc---cccCCCCCCcc-eeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeE
Q 001416 663 EAAPQNFQLYSWETF---QPVGGLLPQPE-WTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWH 733 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~---~l~~~~~~~~k-~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~ 733 (1081)
.|..+++|.+..+.. ....++..|.. .+.-.+|.|++.+. ..+.++|+|||+. |+|.+.+... ..+.+.
T Consensus 19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~-~~~~~~ 96 (325)
T cd05604 19 DGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG-GELFFHLQRE-RSFPEP 96 (325)
T ss_pred CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC-CCHHHHHHHc-CCCCHH
Confidence 356689998876532 11122222322 24557899998876 4678999999998 8887655431 122222
Q ss_pred eeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhh
Q 001416 734 RRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRL 812 (1081)
Q Consensus 734 ~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1081)
....+ +..++.|+.|||...+ |+.+|+.|++++....+|++|||+............ ....
T Consensus 97 ~~~~~--------~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~--~~~g-------- 158 (325)
T cd05604 97 RARFY--------AAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTT--TFCG-------- 158 (325)
T ss_pred HHHHH--------HHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcc--cccC--------
Confidence 22222 4578899999999888 999999999999999999999998643111111000 0011
Q ss_pred hccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 813 ASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 813 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
...|.|||+.... ..+.+.||||+|+++++++.|..||.
T Consensus 159 t~~y~aPE~~~~~-----------~~~~~~DvwslG~il~el~~G~~pf~ 197 (325)
T cd05604 159 TPEYLAPEVIRKQ-----------PYDNTVDWWCLGAVLYEMLYGLPPFY 197 (325)
T ss_pred ChhhCCHHHHcCC-----------CCCCcCccccccceehhhhcCCCCCC
Confidence 1127788876421 12335799999999999999888875
No 496
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=98.63 E-value=9e-10 Score=127.38 Aligned_cols=165 Identities=10% Similarity=-0.049 Sum_probs=108.6
Q ss_pred CCCCccEEEEeecc--ccccCCCCCCcceeeecccCceEEEee-----------eeEEEEEecCcccccccccccccccc
Q 001416 663 EAAPQNFQLYSWET--FQPVGGLLPQPEWTAWDQTVEYCAFAY-----------QHYIVISSLCPQYRYLGDVAIPYATG 729 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~--~~l~~~~~~~~k~v~w~~~~~~~~~~~-----------~~~~~v~~y~~~~gsl~d~~~~~~~~ 729 (1081)
.|..+++|.+.... .....+...|++.+.-.+|.|++.+.. .+.++|++||.. .|.+.+.. .
T Consensus 45 ~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~--~l~~~~~~---~ 119 (359)
T cd07876 45 LGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA--NLCQVIHM---E 119 (359)
T ss_pred CCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCc--CHHHHHhc---c
Confidence 35568999876542 222233445777788889999999871 246999999975 44332211 1
Q ss_pred eeeEeeeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchh
Q 001416 730 AVWHRRQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQ 808 (1081)
Q Consensus 730 ~~w~~~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~ 808 (1081)
+++.....+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ..
T Consensus 120 ~~~~~~~~~--------~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~---~~----- 183 (359)
T cd07876 120 LDHERMSYL--------LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTP---YV----- 183 (359)
T ss_pred CCHHHHHHH--------HHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccCccCCC---Cc-----
Confidence 111111112 4578899999999999 999999999999999999999998653211100000 00
Q ss_pred hhhhhccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 809 VVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 809 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..-.|.|||+.... .-+.+.||||+|++++++++|..||.
T Consensus 184 ---~t~~y~aPE~~~~~-----------~~~~~~DiwSlG~il~el~tg~~pf~ 223 (359)
T cd07876 184 ---VTRYYRAPEVILGM-----------GYKENVDIWSVGCIMGELVKGSVIFQ 223 (359)
T ss_pred ---ccCCCCCchhccCC-----------CCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 11127788876321 12334799999999999999988875
No 497
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=98.62 E-value=5.2e-10 Score=126.90 Aligned_cols=167 Identities=5% Similarity=-0.144 Sum_probs=106.6
Q ss_pred CCccEEEEeecccccc---CCCCCCcceee-ecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEee
Q 001416 665 APQNFQLYSWETFQPV---GGLLPQPEWTA-WDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRR 735 (1081)
Q Consensus 665 ~~~~i~~~~~~~~~l~---~~~~~~~k~v~-w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~ 735 (1081)
..+++|.+..+....- .....|...+. -.+|.|++.+. ....++|+|||+. |+|.+.+.. ...+.+...
T Consensus 21 ~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~-g~L~~~l~~-~~~~~~~~~ 98 (316)
T cd05619 21 QFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG-GDLMFHIQS-CHKFDLPRA 98 (316)
T ss_pred CEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC-CcHHHHHHH-cCCCCHHHH
Confidence 3478887766432111 11111222221 24688887766 4568899999998 888876543 122333322
Q ss_pred eeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhc
Q 001416 736 QLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLAS 814 (1081)
Q Consensus 736 ~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1081)
..+ +..+++|+.|||...+ |+.+|++|++++....+|++|||+............ ... -..
T Consensus 99 ~~~--------~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~--------gt~ 160 (316)
T cd05619 99 TFY--------AAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTC--TFC--------GTP 160 (316)
T ss_pred HHH--------HHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCcee--eec--------CCc
Confidence 223 5578889999999998 999999999999999999999998653111000000 000 111
Q ss_pred cccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 815 FQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|.|||+... ..-+.+.||||+|++++++++|..|+.
T Consensus 161 ~y~aPE~~~~-----------~~~~~~~DvwslG~il~el~~G~~pf~ 197 (316)
T cd05619 161 DYIAPEILLG-----------QKYNTSVDWWSFGVLLYEMLIGQSPFH 197 (316)
T ss_pred cccCHHHHcC-----------CCCCchhhhhhHHHHHHHHHhCCCCCC
Confidence 2778887532 112345799999999999999888874
No 498
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=98.62 E-value=4.8e-10 Score=127.49 Aligned_cols=168 Identities=6% Similarity=-0.135 Sum_probs=108.6
Q ss_pred CCCccEEEEeeccccc---cCCCCCCcc-eeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEe
Q 001416 664 AAPQNFQLYSWETFQP---VGGLLPQPE-WTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHR 734 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~~l---~~~~~~~~k-~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~ 734 (1081)
|..+++|.+..+...- ..++..|.. .++-.+|.|++.+. ....++|+|||+. |+|.+.+.+.. .+....
T Consensus 20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~-~~~~~~ 97 (321)
T cd05603 20 GSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG-GELFFHLQRER-CFLEPR 97 (321)
T ss_pred CCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC-CCHHHHHHHcC-CCCHHH
Confidence 4568999887654321 111222222 24456789999886 4678999999998 88875554321 111111
Q ss_pred eeeeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhh
Q 001416 735 RQLFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLA 813 (1081)
Q Consensus 735 ~~~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1081)
...+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ .... .
T Consensus 98 ~~~~--------~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~g--------t 159 (321)
T cd05603 98 ARFY--------AAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTS--TFCG--------T 159 (321)
T ss_pred HHHH--------HHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccc--cccC--------C
Confidence 1112 4578899999999888 999999999999999999999998653111000000 0001 1
Q ss_pred ccccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 814 SFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 814 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
..|.|||+.... .-..+.||||+|++++|++.|..||.
T Consensus 160 ~~y~aPE~~~~~-----------~~~~~~DiwslG~il~el~~g~~pf~ 197 (321)
T cd05603 160 PEYLAPEVLRKE-----------PYDRTVDWWCLGAVLYEMLYGLPPFY 197 (321)
T ss_pred cccCCHHHhcCC-----------CCCCcCcccccchhhhhhhcCCCCCC
Confidence 126788875321 12234799999999999999888875
No 499
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=98.62 E-value=5.4e-10 Score=125.97 Aligned_cols=170 Identities=7% Similarity=-0.060 Sum_probs=110.2
Q ss_pred CCCCccEEEEeeccccc-cCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeee
Q 001416 663 EAAPQNFQLYSWETFQP-VGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ 736 (1081)
Q Consensus 663 ~~~~~~i~~~~~~~~~l-~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~ 736 (1081)
.|..+++|.+......- ......|++.++-.+|.|++.+. ....++|+|||+. +|.+.+......+......
T Consensus 29 ~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~--~l~~~~~~~~~~~~~~~~~ 106 (303)
T cd07869 29 NGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHT--DLCQYMDKHPGGLHPENVK 106 (303)
T ss_pred CCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCCc--CHHHHHHhCCCCCCHHHHH
Confidence 35558888876443221 12234466677777899998876 5678999999974 5555443322222222112
Q ss_pred eeEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhcc
Q 001416 737 LFVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASF 815 (1081)
Q Consensus 737 ~~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1081)
.+ +..++.|+.|||...+ |+.+|++|++++..-.+|++|||+............ .... .-.
T Consensus 107 ~~--------~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~--~~~~--------~~~ 168 (303)
T cd07869 107 LF--------LFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYS--NEVV--------TLW 168 (303)
T ss_pred HH--------HHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCC--CCcc--------cCC
Confidence 22 4578899999999998 999999999999999999999998653221110000 0001 112
Q ss_pred ccCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 816 QHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 816 ~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
|.|||+.... ..-+.+.||||+|++++++++|..||.
T Consensus 169 y~aPE~~~~~----------~~~~~~~DiwslG~il~~l~~g~~pf~ 205 (303)
T cd07869 169 YRPPDVLLGS----------TEYSTCLDMWGVGCIFVEMIQGVAAFP 205 (303)
T ss_pred CCChHHHcCC----------CCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 6788864211 012234699999999999999988885
No 500
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=98.62 E-value=4.8e-10 Score=125.36 Aligned_cols=169 Identities=7% Similarity=-0.026 Sum_probs=110.4
Q ss_pred CCCccEEEEeeccc-cccCCCCCCcceeeecccCceEEEe-----eeeEEEEEecCcccccccccccccccceeeEeeee
Q 001416 664 AAPQNFQLYSWETF-QPVGGLLPQPEWTAWDQTVEYCAFA-----YQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQL 737 (1081)
Q Consensus 664 ~~~~~i~~~~~~~~-~l~~~~~~~~k~v~w~~~~~~~~~~-----~~~~~~v~~y~~~~gsl~d~~~~~~~~~~w~~~~~ 737 (1081)
++.+++|.+.-+.. ........|++.++-.+|.|++.+. ....++|+|||+ |+|.+.+......+.+.....
T Consensus 30 ~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~--~~l~~~l~~~~~~~~~~~~~~ 107 (288)
T cd07871 30 ENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD--SDLKQYLDNCGNLMSMHNVKI 107 (288)
T ss_pred CCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC--cCHHHHHHhcCCCCCHHHHHH
Confidence 45588888764432 1222344577777778899999986 346789999997 466654433111112211112
Q ss_pred eEeccCceEEEeeeCCccccchhhh-hhhhhhhhHHhhhhHhhhccceeeeeecccchhhhcccccCCcchhhhhhhccc
Q 001416 738 FVVTPTTIECVFVDAGVAAIDVETM-KMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQ 816 (1081)
Q Consensus 738 ~~~t~~~i~~~~~~~gm~~lh~s~~-hg~l~s~nc~vd~rwv~k~~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1081)
+ +..++.|+.|||...+ |+.+|++|++++....+|++|||+............ ... ....+
T Consensus 108 ~--------~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~-----~~~-----~~~~y 169 (288)
T cd07871 108 F--------MFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYS-----NEV-----VTLWY 169 (288)
T ss_pred H--------HHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcccc-----Cce-----ecccc
Confidence 2 4578899999999998 999999999999999999999998764321111000 000 01126
Q ss_pred cCCCCCCCcCCCccccccCCCCCCcccccccceeeeeecCCcceee
Q 001416 817 HAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVA 862 (1081)
Q Consensus 817 ~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~~ 862 (1081)
.|||+.... ...+.+.||||+|++++++++|..|+.
T Consensus 170 ~aPE~~~~~----------~~~~~~~DiwslG~~l~~l~~g~~pf~ 205 (288)
T cd07871 170 RPPDVLLGS----------TEYSTPIDMWGVGCILYEMATGRPMFP 205 (288)
T ss_pred cChHHhcCC----------cccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 788875321 112345799999999999999988875
Done!