Query 001416
Match_columns 1081
No_of_seqs 830 out of 4288
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 16:10:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001416.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_718-721//hhsearch_pdb/001416hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 427.1 55.7 729 2-1057 4-779 (814)
2 1nr0_A Actin interacting prote 1.0 1 1 332.6 53.1 334 8-405 15-358 (611)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 324.7 49.5 348 4-406 608-996 (1249)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 320.9 53.7 320 3-401 8-333 (577)
5 1nr0_A Actin interacting prote 1.0 1 1 318.5 51.8 437 3-535 51-510 (611)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 311.2 45.8 337 4-404 650-1036(1249)
7 1vyh_C Platelet-activating fac 1.0 1 1 311.1 39.1 289 4-401 101-410 (410)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 306.5 45.6 318 3-399 49-372 (577)
9 1got_B GT-beta; complex (GTP-b 1.0 1 1 295.7 41.3 288 3-399 47-340 (340)
10 3iz6_a 40S ribosomal protein R 1.0 1 1 294.5 33.2 300 3-403 58-376 (380)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=427.07 Aligned_cols=729 Identities=17% Similarity=0.247 Sum_probs=416.1
Q ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCEEE
Q ss_conf 52105178898469999948998999996899299997788918999823774614886468886998204788972265
Q 001416 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 2 l~l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~Lasg~~d~~~~~~~~ 81 (1081)
-..+.|.+|++.|++++|||++++|++++.||.|+|||+.+++.+.++.. |...
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~------------------------- 57 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETP------------------------- 57 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSC-------------------------
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCC-------------------------
T ss_conf 50004505898568999889999899994799899998999916778733-8996-------------------------
Q ss_pred ECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCCCCCCCCC
Q ss_conf 0499637999959959999968886224445500147899854101278999499999569299-999027972124400
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~~~~~~~~ 160 (1081)
|.+++|+|+++ ++++++.++.+ +||+.+++ .+...
T Consensus 58 -----------------------------------------v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~--~~~~~ 93 (814)
T 3mkq_A 58 -----------------------------------------VRAGKFIARKN-WIIVGSDDFRIRVFNYNTGE--KVVDF 93 (814)
T ss_dssp -----------------------------------------EEEEEEEGGGT-EEEEEETTSEEEEEETTTCC--EEEEE
T ss_pred -----------------------------------------EEEEEEECCCC-EEEEEECCCEEEEEECCCCC--EEEEE
T ss_conf -----------------------------------------88999968999-89999289949999899995--87998
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCC-EEEEEEECCCCCCEEEEEEEEECC-CCCEEEEEECCCC
Q ss_conf 25899836999922122699999999977990999993899-599998065564357999865279-9989999958990
Q 001416 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGL 238 (1081)
Q Consensus 161 ~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~-~~i~~~~~~h~~~V~~i~w~~~s~-d~~~l~sgs~Dg~ 238 (1081)
..|...|++++| +|+++++++++.||.|++||+.++ .....+. +|...|++++| +| ++..+++++.||+
T Consensus 94 ~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~---~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 94 EAHPDYIRSIAV-----HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAF---NPKDPSTFASGCLDRT 164 (814)
T ss_dssp ECCSSCEEEEEE-----CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEE---ETTEEEEEEEEETTSE
T ss_pred ECCCCCEEEEEE-----ECCCCEEEEECCCCEEEEEECCCCCEEEEEEC-CCCCCEEEEEE---ECCCCCEEEEEECCCE
T ss_conf 168997899999-----58999899992899899998999954879983-79986889999---7699999999948894
Q ss_pred EEEEECCCCCCCCCCCCCEEECC-CCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCE
Q ss_conf 99998688986421013111003-67767899996505998889999899809999889980566742777324678786
Q 001416 239 LILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1081)
Q Consensus 239 I~iWd~~~~~~~~~~~~~~~l~~-h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~~~~h~~~v 317 (1081)
|++||+..+..... +.. +..++.+++|+|. +++.++++++.|+.|++||+.+++.+..+ .+|...+
T Consensus 165 v~vwd~~~~~~~~~------~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~~~~~v 231 (814)
T 3mkq_A 165 VKVWSLGQSTPNFT------LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL------EGHMSNV 231 (814)
T ss_dssp EEEEETTCSSCSEE------EECCCTTCCCEEEECCS-TTCCEEEEECTTSEEEEEETTTTEEEEEE------ECCSSCE
T ss_pred EEEEECCCCCCEEE------EECCCCCCEEEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEE------CCCCCCE
T ss_conf 99998999961069------83588897799999977-99989999938997999999999188998------4788887
Q ss_pred EEEEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCE-EEEEEECCCE
Q ss_conf 999646999799-997893--499911698555566633568888972870478713899999089990-9999978994
Q 001416 318 WCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH-LVATGTNVGV 393 (1081)
Q Consensus 318 ~~i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~i~~sp~~~~-liatgs~dG~ 393 (1081)
.+++|+|++.++ +++.|+ ++|+..+ ......+..+.. .+++++|+|++.. ++++|++++.
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~---------------~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ 295 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSST---------------YKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGF 295 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTT---------------CSEEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCC---------------CCEEEEEECCCC-CEEEEEECCCCCCEEEEEEECCCE
T ss_conf 8999859999999990899699998999---------------947778406888-679999924999509999907987
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCE---EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 99983899999976557999999713999955957---999973237889988888544788985788035776531024
Q 001416 394 IISEFDPRSLPAVAPLPTPSGSRDHSAVYIVEREL---KLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKK 470 (1081)
Q Consensus 394 Il~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~l~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 470 (1081)
.+|+.........+. +....++...... ........... .. ..+.... ....
T Consensus 296 --~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~---------~~~~ 350 (814)
T 3mkq_A 296 --TVLSLGNDEPTLSLD-----PVGKLVWSGGKNAAASDIFTAVIRGNE--EV-------EQDEPLS---------LQTK 350 (814)
T ss_dssp --EEEECSCCSCCEEEC-----SSSEEEEECCTTSCTTCEEEEECCSCC--CC-------CSSSCBC---------CCCE
T ss_pred --EEEECCCCCCEEEEC-----CCCCEEEECCCCCCCEEEEEEECCCCC--CC-------CCCCCCE---------EEEE
T ss_conf --999767997416777-----998789977636641124665304655--55-------5676201---------4651
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCEEEEECCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 21343489998769985589878986399991379996270896317445999704751000011255998887888998
Q 001416 471 HISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGS 550 (1081)
Q Consensus 471 ~i~~~~~~~~~~~l~~S~~Gr~iav~~~~~~~~~i~~~~~~~~~~~G~~~~~aW~~~~~~~a~l~~~~~~~~~~~~~~~~ 550 (1081)
.+....... ..+++||+|+++++. +++.+.+|+...++....|.+..++|++++..+|+.......++ .
T Consensus 351 ~~~~~~~~~--~~~~~spdg~~la~~--~~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l--~----- 419 (814)
T 3mkq_A 351 ELGSVDVFP--QSLAHSPNGRFVTVV--GDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKY--Y----- 419 (814)
T ss_dssp EECCCSSCC--SEEEECTTSSEEEEE--ETTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEE--E-----
T ss_pred CCCCCCCCC--CEEEECCCCCEEEEE--CCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEE--E-----
T ss_conf 178876577--406899999989994--29889999874544567995479999479985999968983999--9-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 23579999999999999998612251799997068862157740179998811221432579998303445800001111
Q 001416 551 SRKAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAIS 630 (1081)
Q Consensus 551 ~~~~~~~~~~~~~~~~a~~~aa~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~llgv~~~~~~~~~~~~~~~~~ 630 (1081)
+.+ .+.... +........+++++.|+.+...
T Consensus 420 -~~~-----------------------------~~~~~~-----v~~~~~s~dg~~~~~l~~~~~d-------------- 450 (814)
T 3mkq_A 420 -KNF-----------------------------KEVTSW-----SVPMHSAIDRLFSGALLGVKSD-------------- 450 (814)
T ss_dssp -ETT-----------------------------EECTTC-----CCCCSSCCCEEECSSSEEEEET--------------
T ss_pred -ECC-----------------------------CCCCCE-----EECCCCCCCCEECCEEEEEECC--------------
T ss_conf -777-----------------------------775243-----9737867552365469999669--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEE------EE
Q ss_conf 122465556698887555334789877889999998427997420433267888996112342667267876------30
Q 001416 631 TIQSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA------YQ 704 (1081)
Q Consensus 631 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~w~~~~l~~~~~~~~k~v~w~~~~~~~~~~------~~ 704 (1081)
..|.+||+++.++++.+....+.+.|++++.+++++ ..
T Consensus 451 ------------------------------------~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~ 494 (814)
T 3mkq_A 451 ------------------------------------GFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDE 494 (814)
T ss_dssp ------------------------------------TEEEEECTTTCCEEEEESSCEEEEEECTTSSEEEEEECCCSSCS
T ss_pred ------------------------------------CEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf ------------------------------------98999998769599997358887999699999999986766677
Q ss_pred EEEEEEECCCCCCCCCCCCCCC---CCCEEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1799994274300112332565---4320567524667506715998652773110112344455533477666676611
Q 001416 705 HYIVISSLCPQYRYLGDVAIPY---ATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEH 781 (1081)
Q Consensus 705 ~~~~i~~y~~~~gsl~d~~~~~---~~~~~w~~~~~~~~t~~~i~~~~~~~G~~~lh~s~~hg~l~s~nc~vd~rwv~k~ 781 (1081)
+.++++.|++. ..+..+..+. +.+.+-.|.. ...+ .+.+....|+
T Consensus 495 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~------------------~~~i~s~~w~--- 542 (814)
T 3mkq_A 495 ASGYTLLFNKD-AYLEAANNGNIDDSEGVDEAFDV----------LYEL------------------SESITSGKWV--- 542 (814)
T ss_dssp CSEEEEEECHH-HHHHHHHHTCCBTTTBCTTTEEE----------EEEE------------------CSCCSEEEEE---
T ss_pred CEEEEEEECHH-HHHHHHHCCCCCCCCCHHHHEEE----------EEEE------------------CCEEEEEEEE---
T ss_conf 42899995468-86666641687621250222136----------4576------------------4278765980---
Q ss_pred CCEEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 44144552132011100001499502001000013578999876788664224999999641000100134341884023
Q 001416 782 GELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAV 861 (1081)
Q Consensus 782 ~d~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~dvys~~i~~~~~~~~~~~~ 861 (1081)
.++.+++ ...+.+.++.+++..
T Consensus 543 ~~~~i~~----------------------------------------------------------t~~~~~~~~~~~~~~ 564 (814)
T 3mkq_A 543 GDVFIFT----------------------------------------------------------TATNRLNYFVGGKTY 564 (814)
T ss_dssp TTEEEEE----------------------------------------------------------CTTSEEEEEETTEEE
T ss_pred CCEEEEE----------------------------------------------------------CCCCEEEEEECCEEE
T ss_conf 8889997----------------------------------------------------------688708999698668
Q ss_pred EECCCCCCCCCCCCCCEEEE--EECCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHHHH-HHCCCC-CCCHHHHHH
Q ss_conf 21179988777899839855--41580999711333222578883220000102465788875-410039-642799999
Q 001416 862 AVTRFPTEQKRPIGPLVVVG--VKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK-WASRLG-REHHDDLAQ 937 (1081)
Q Consensus 862 ~~~~l~~~~~~~~~p~~~~~--~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-r~~~~~i~~ 937 (1081)
.+.+++ .|+++.+ +..++++++|+..++..+.++.+.++|++++..+++..+.. ..+.++ +.....+++
T Consensus 565 ~~~~~~-------~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~ 637 (814)
T 3mkq_A 565 NLAHYT-------KEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIAR 637 (814)
T ss_dssp EEEECS-------SCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHH
T ss_pred EEEECC-------CCEEEEEEEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999989-------6679999983299999992888879999890999996998707999999888742884678999999
Q ss_pred HHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC--------------CCCCCCCCCCCCCC--
Q ss_conf 99926908898211231499999999843349988552014100102089--------------97731013323344--
Q 001416 938 FMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQ--------------DHPGLDLNDILTLT-- 1001 (1081)
Q Consensus 938 ~l~~~~~~~~A~~le~~~~er~~~L~~e~~k~~~ll~~~lp~~va~~l~~--------------~~~ti~fsdivgft-- 1001 (1081)
||++.|+.+.|+++. .++.++|+++++.++.+.|+..+........|++ +.|-.--.|.-+..
T Consensus 638 ~l~~~~~~~~a~~~~-~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 638 FLEGQEYYEEALNIS-PDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHTTCHHHHHHHC-CCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHCCCHHHHEECC-CCCCHHEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 998689868960527-8931425021450999999999986176768999999999849989999999870271355899
Q ss_pred -CCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHCCCH
Q ss_conf -4554------2677886468899877887643211102245899999875202101000101
Q 001416 1002 -TKKE------NIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGH 1057 (1081)
Q Consensus 1002 -~~~s------~p~~vv~~ln~ly~~fd~ii~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1081)
.... .-.+.-....++-..|..-...-|+.++.++..+..+...|+..++.+-+..
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf 877299999999999999858667999999880999999999998699478999998709975
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=332.63 Aligned_cols=334 Identities=15% Similarity=0.161 Sum_probs=252.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEE--CCCCCEEEEEECCCCCCCEEEECCC
Q ss_conf 78898469999948998999996899299997788918999823774614886--4688869982047889722650499
Q 001416 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGG 85 (1081)
Q Consensus 8 ~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~Lasg~~d~~~~~~~~l~g~ 85 (1081)
..+.+.+.+++|+|+|++|++++ ++.|++|++.+++....+. +|...+..+ +|+++++++++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~-------------- 78 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGD-------------- 78 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEE--------------
T ss_pred CCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEEC-CCCCCEEEEEECCCCCEEEEEE--------------
T ss_conf 74068236976679999799679-9979994578724273765-8998659999999996899994--------------
Q ss_pred CEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECC----CEEEEEECCCCCCCCCCCC
Q ss_conf 637999959959999968886224445500147899854101278999499999569----2999990279721244002
Q 001416 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN----KAIFLDLVTMRGRDIPKQE 161 (1081)
Q Consensus 86 ~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d----~~i~wd~~t~~~~~~~~~~ 161 (1081)
.|++|++||+.+++.. ......+| ...|.+++|+|+++.+++++.++ .+.+|| ++ .....+.
T Consensus 79 -------~d~~v~lWd~~~~~~~--~~~~~~~~-~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~--~~~~~l~ 144 (611)
T 1nr0_A 79 -------VHGNVRIWDTTQTTHI--LKTTIPVF-SGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TG--TSNGNLT 144 (611)
T ss_dssp -------TTSEEEEEESSSTTCC--EEEEEECS-SSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TC--CBCBCCC
T ss_pred -------CCCCEEEEECCCCCCE--EEEEECCC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CC--CCCCEEC
T ss_conf -------8997899489898415--66762255-784489998999997999989977366999963--89--9763254
Q ss_pred CCCCCEEEEEEEECCCCCCCC-EEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 589983699992212269999-9999977990999993899599998065564357999865279998999995899099
Q 001416 162 LDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1081)
Q Consensus 162 ~~~~~I~~i~~~p~~~sp~~~-~l~tgs~Dg~I~iwd~~~~~~i~~~~~~h~~~V~~i~w~~~s~d~~~l~sgs~Dg~I~ 240 (1081)
.|...|++++| +|+++ .+++|+.|++|++||..++++...+. +|...|.+++ ++|++++|++++.|++|+
T Consensus 145 gh~~~v~~v~f-----~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~---fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 145 GQARAMNSVDF-----KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVR---YNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp CCSSCEEEEEE-----CSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEE---ECTTSSEEEEEETTSCEE
T ss_pred CCCCCCEEEEE-----CCCCCEEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCCEE
T ss_conf 78898369998-----89998299999289809999799975766520-0257169999---979999899998999199
Q ss_pred EEECCCCCCCCCCC-CCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf 99868898642101-31110036776789999650599888999989980999988998056674277732467878699
Q 001416 241 LWSADHGQDSRELV-PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 241 iWd~~~~~~~~~~~-~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
+||+.+++....+. ......+|...|.+++|+| ++.+|++++.|++|++||+.+++++.++... ..+......
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~---~~~~~~~~~ 289 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP---DGTKIASASADKTIKIWNVATLKVEKTIPVG---TRIEDQQLG 289 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSGGGCEEE
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCCCEEEE
T ss_conf 9889998286651366432356678789999979---9999999908980999968887013440478---876640689
Q ss_pred EEECCCCCEEEEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 9646999799997893--49991169855556663356888897287047871389999908999099999789949998
Q 001416 320 HPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1081)
Q Consensus 320 i~~spd~~lls~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~i~~sp~~~~liatgs~dG~Il~i 397 (1081)
+.| ....+++++.|+ ++|+... ..+...+.+|.. .|++++|+|+ +.++++++.||.| ++
T Consensus 290 ~~~-~~~~l~s~s~d~~i~~~~~~~---------------~~~~~~~~gh~~-~v~~l~~spd-g~~l~s~s~D~~v-~~ 350 (611)
T 1nr0_A 290 IIW-TKQALVSISANGFINFVNPEL---------------GSIDQVRYGHNK-AITALSSSAD-GKTLFSADAEGHI-NS 350 (611)
T ss_dssp EEE-CSSCEEEEETTCCEEEEETTT---------------TEEEEEECCCSS-CEEEEEECTT-SSEEEEEETTSCE-EE
T ss_pred EEE-CCCEEEEEECCCCEEEEECCC---------------CCCCEEECCCCC-CEEEEEEECC-CCEEEEEECCCCE-EE
T ss_conf 997-388799995899689996889---------------974469837888-8899999189-9989999589849-99
Q ss_pred ECCCCCCC
Q ss_conf 38999999
Q 001416 398 FDPRSLPA 405 (1081)
Q Consensus 398 wd~~~~~~ 405 (1081)
||+.....
T Consensus 351 Wd~~~~~~ 358 (611)
T 1nr0_A 351 WDISTGIS 358 (611)
T ss_dssp EETTTCCE
T ss_pred EECCCCCE
T ss_conf 97887925
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=324.70 Aligned_cols=348 Identities=14% Similarity=0.132 Sum_probs=270.7
Q ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEE--CCCCCEEEEEECCCCCCCEEE
Q ss_conf 105178898469999948998999996899299997788918999823774614886--468886998204788972265
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEA 81 (1081)
Q Consensus 4 l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~Lasg~~d~~~~~~~~ 81 (1081)
...+.+|.+.|++++|+|+++++++|+.||.|++||..+++.+.++. +|...+..+ +++++.+++++
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---------- 676 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---------- 676 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE----------
T ss_conf 27871666648999987999989999488949999989997888760-6777789999926999899981----------
Q ss_pred ECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CEEEEEEECCCEE-EEEECCCCCCCCCC
Q ss_conf 049963799995995999996888622444550014789985410127899-9499999569299-99902797212440
Q 001416 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKG-RHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1081)
Q Consensus 82 l~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg-~~~lvs~s~d~~i-~wd~~t~~~~~~~~ 159 (1081)
.|++|++||+.+++. .....+| ...|.+++|+|++ ..++++++.++.+ +||+.+++ ....
T Consensus 677 -----------~d~~v~vwd~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~~ 738 (1249)
T 3sfz_A 677 -----------ADKKVKIWDSATGKL----VHTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRNT 738 (1249)
T ss_dssp -----------TTSEEEEEETTTCCE----EEEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEEE
T ss_pred -----------CCCEEEEEECCCCCE----EEEECCC-CCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCC--HHHE
T ss_conf -----------899599987799936----8999589-973799998408996599998089709999899963--4220
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEC------------CCCCCEEEEEEEEECCCC
Q ss_conf 02589983699992212269999999997799099999389959999806------------556435799986527999
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------------GHKGSISCLMTFMASSGE 227 (1081)
Q Consensus 160 ~~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~------------~h~~~V~~i~w~~~s~d~ 227 (1081)
...|...|.+++| +|++.++++++.||.|++||+.+++....+.. .+...+.+++ +++++
T Consensus 739 ~~~h~~~v~~~~~-----sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~dg 810 (1249)
T 3sfz_A 739 MFGHTNSVNHCRF-----SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADG 810 (1249)
T ss_dssp ECCCSSCEEEEEE-----CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC---BCTTS
T ss_pred ECCCCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE---ECCCC
T ss_conf 1277797889999-----259998999978985999968888655302023210246776445650179999---97899
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
Q ss_conf 89999958990999986889864210131110036776789999650599888999989980999988998056674277
Q 001416 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1081)
Q Consensus 228 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~ 307 (1081)
..+++++ ++.+.+|++.++...... ..+|...|.+++|+| ++.++++++.|+.|++||+.++..+..+
T Consensus 811 ~~l~~~~-~~~v~~~d~~~~~~~~~~-----~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vwd~~~~~~~~~~--- 878 (1249)
T 3sfz_A 811 DKIIVAA-KNKVLLFDIHTSGLLAEI-----HTGHHSTIQYCDFSP---YDHLAVIALSQYCVELWNIDSRLKVADC--- 878 (1249)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE-----ECSSSSCCCEEEECS---STTEEEEECSSSCEEEEETTTTEEEEEE---
T ss_pred CEEEEEC-CCCEEEEEECCCCCEEEE-----CCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEC---
T ss_conf 8899975-895999995689723577-----478777607999827---8888999947986999986789565322---
Q ss_pred CCCCCCCCCEEEEEECCCCCEE-EEECCC--EEEEECCCCCCCCCC--------------CCCCCCCCCCC--------E
Q ss_conf 7324678786999646999799-997893--499911698555566--------------63356888897--------2
Q 001416 308 PKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTR--------------PLCELSSLVPP--------Q 362 (1081)
Q Consensus 308 ~~~~~h~~~v~~i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~--------------~~~~~~~~~~~--------~ 362 (1081)
.+|...+.++.|+|++..+ +++.|+ ++|++.......... ........... .
T Consensus 879 ---~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 879 ---RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred ---CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCE
T ss_conf ---78766568999989999899995897289887466520102113310368975998689981377624898447650
Q ss_pred EECCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 87047871389999908999099999789949998389999997
Q 001416 363 VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1081)
Q Consensus 363 ~l~~~~~~~V~~i~~sp~~~~liatgs~dG~Il~iwd~~~~~~~ 406 (1081)
....+.. .+.+++|+|+ +.++++|+.+|.| ++||.......
T Consensus 956 ~~~~~~~-~i~~~~~sp~-g~~l~~g~~~g~i-~i~d~~~~~~~ 996 (1249)
T 3sfz_A 956 IDYLPEA-QVSCCCLSPH-LEYVAFGDEDGAI-KIIELPNNRVF 996 (1249)
T ss_dssp EEEECCS-CEEEEEECTT-SSEEEEEETTSCC-EEEETTTTSCE
T ss_pred EEECCCC-CEEEEEECCC-CCEEEEECCCCCE-EEEECCCCCEE
T ss_conf 8972567-2789999589-9779998699988-99975787234
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=320.90 Aligned_cols=320 Identities=17% Similarity=0.254 Sum_probs=232.9
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEE--CCCCCEEEEEECCCCCCCEE
Q ss_conf 2105178898469999948998999996899299997788918999823774614886--46888699820478897226
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~Lasg~~d~~~~~~~ 80 (1081)
..+.|+||++.|++++|+|+|++|++|+.|+.|+|||. +++++.++. +|...+..+ +|+++.|++++
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~-gh~~~V~~l~fspdg~~las~~--------- 76 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS--------- 76 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSEEEEEE---------
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEE---------
T ss_conf 94398789985799999899899999938998999979-997899996-8989989999989999999996---------
Q ss_pred EECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCCCCCCCC
Q ss_conf 50499637999959959999968886224445500147899854101278999499999569299-99902797212440
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~~~~~~~ 159 (1081)
.|++|++||... +. .....+| ...|.+++|+|+++ .+++++.++.+ +|+.... ....
T Consensus 77 ------------~d~~i~vWd~~~-~~----~~~~~~~-~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~---~~~~ 134 (577)
T 2ymu_A 77 ------------DDKTVKLWNRNG-QL----LQTLTGH-SSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ---LLQT 134 (577)
T ss_dssp ------------TTSCEEEEETTS-CE----EEEECCC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTCC---EEEE
T ss_pred ------------CCCEEEEEECCC-CE----EEEEECC-CCCEEEEEECCCCC-EEEEECCCCCEEECCCCCC---EEEE
T ss_conf ------------989799998999-78----9999789-99889999989999-8999807983352023552---0011
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 02589983699992212269999999997799099999389959999806556435799986527999899999589909
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~~h~~~V~~i~w~~~s~d~~~l~sgs~Dg~I 239 (1081)
...+...+.++.+ +|++..+++++.++.+++|+... ....... .|...+.++. +++++..+++++.|+.|
T Consensus 135 ~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~d~~v 204 (577)
T 2ymu_A 135 LTGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVWGVA---FSPDGQTIASASDDKTV 204 (577)
T ss_dssp ECCCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTTS-CEEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSEE
T ss_pred CCCCCCCEEEEEE-----ECCCCCCEECCCCCCEECCCCCE-EEEEECC-CCCCCEEEEE---ECCCCCEEEEECCCCEE
T ss_conf 0477774355542-----03776320025553100000000-0000026-8776356654---16997789998599989
Q ss_pred EEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf 99986889864210131110036776789999650599888999989980999988998056674277732467878699
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 240 ~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
++|+... +. ...+.+|...|.+++|+| ++.+|++++.|+.|++||.. ++.+..+ .+|...+.+
T Consensus 205 ~~w~~~~-~~------~~~~~~~~~~v~~~~~s~---dg~~l~~~~~d~~i~~w~~~-~~~~~~~------~~~~~~v~~ 267 (577)
T 2ymu_A 205 KLWNRNG-QL------LQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRN-GQLLQTL------TGHSSSVNG 267 (577)
T ss_dssp EEECTTS-CE------EEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTT-SCEEEEE------CCCSSCEEE
T ss_pred EEEECCC-CE------EEEEECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEEE------ECCCCCEEE
T ss_conf 9994999-68------999946889889999979---99999999189989999599-9799998------068898799
Q ss_pred EEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCEEEE
Q ss_conf 9646999799-997893--4999116985555666335688889728704787138999990899909999978994999
Q 001416 320 HPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1081)
Q Consensus 320 i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~i~~sp~~~~liatgs~dG~Il~ 396 (1081)
++|+|++..+ +++.|+ ++|+... .....+.+|.. .|++++|+|+ +..+++++.||.+ +
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~~~----------------~~~~~~~~h~~-~v~~~~~~~~-~~~l~t~~~d~~i-~ 328 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNRNG----------------QLLQTLTGHSS-SVWGVAFSPD-GQTIASASDDKTV-K 328 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS----------------CEEEEECCCSS-CEEEEEECTT-SSEEEEEETTSCE-E
T ss_pred EEECCCCCEEEEEECCCEEEEEECCC----------------CEEEEEECCCC-CEEEEEECCC-CCEEEEEECCCEE-E
T ss_conf 99968999999995999799994899----------------58999706889-7699999999-9999999699959-9
Q ss_pred EECCC
Q ss_conf 83899
Q 001416 397 EFDPR 401 (1081)
Q Consensus 397 iwd~~ 401 (1081)
+||..
T Consensus 329 ~w~~~ 333 (577)
T 2ymu_A 329 LWNRN 333 (577)
T ss_dssp EEETT
T ss_pred EEECC
T ss_conf 99699
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=318.53 Aligned_cols=437 Identities=11% Similarity=0.103 Sum_probs=302.1
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCEEEE--CCCCCEEEEEECCCCCCC
Q ss_conf 210517889846999994899899999689929999778891--8999823774614886--468886998204788972
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKP 78 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~--~i~~~~~~~~~~v~~v--s~~~~~Lasg~~d~~~~~ 78 (1081)
.++.|.+|.+.|++++|+|++++|++|+.|++|+|||+.+++ ...++. .|...+..+ +|+++.+++++.+..
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~--- 126 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRE--- 126 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSS---
T ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCC---
T ss_conf 27376589986599999999968999948997899489898415667622-55784489998999997999989977---
Q ss_pred EEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCCCCCC
Q ss_conf 2650499637999959959999968886224445500147899854101278999499999569299-999027972124
Q 001416 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI 157 (1081)
Q Consensus 79 ~~~l~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~~~~~ 157 (1081)
.++.|++|| .++. ...+.+| ...|.+++|+|+++..+++++.|+.+ +||..+. +..
T Consensus 127 --------------~~~~v~~wd--~~~~----~~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~ 183 (611)
T 1nr0_A 127 --------------RFGHVFLFD--TGTS----NGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFK 183 (611)
T ss_dssp --------------CSEEEEETT--TCCB----CBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEE
T ss_pred --------------CEEEEEEEE--CCCC----CCEECCC-CCCCEEEEECCCCCEEEEEEECCCEEEEEECCCC--EEE
T ss_conf --------------366999963--8997----6325478-8983699988999829999928980999979997--576
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEC------CCCCCEEEEEEEEECCCCCEEE
Q ss_conf 4002589983699992212269999999997799099999389959999806------5564357999865279998999
Q 001416 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------GHKGSISCLMTFMASSGEALLV 231 (1081)
Q Consensus 158 ~~~~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~------~h~~~V~~i~w~~~s~d~~~l~ 231 (1081)
..+..|...|.+++| +|++.++++|+.|++|++||..+++++..+.. +|.+.|.+++ ++|++.+|+
T Consensus 184 ~~l~~H~~~V~~v~f-----spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~---~spdg~~l~ 255 (611)
T 1nr0_A 184 STFGEHTKFVHSVRY-----NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIA 255 (611)
T ss_dssp EEECCCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE---ECTTSSEEE
T ss_pred EEECCCCCCEEEEEE-----CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEE---ECCCCCEEE
T ss_conf 652002571699999-----799998999989991999889998286651366432356678789999---979999999
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCC
Q ss_conf 99589909999868898642101311100367767899996505998889999899809999889980566742777324
Q 001416 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1081)
Q Consensus 232 sgs~Dg~I~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~~~ 311 (1081)
+++.|++|++||+.+++....+.. -..+...+..+.| ++..+++++.|+.+++|+...+++...+ .
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~l~s~s~d~~i~~~~~~~~~~~~~~------~ 321 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPV---GTRIEDQQLGIIW-----TKQALVSISANGFINFVNPELGSIDQVR------Y 321 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEC---CSSGGGCEEEEEE-----CSSCEEEEETTCCEEEEETTTTEEEEEE------C
T ss_pred EEECCCEEEEEECCCCCEEEEECC---CCCCCCEEEEEEE-----CCCEEEEEECCCCEEEEECCCCCCCEEE------C
T ss_conf 990898099996888701344047---8876640689997-----3887999958996899968899744698------3
Q ss_pred CCCCCEEEEEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEE-CCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 678786999646999799-997893--49991169855556663356888897287-04787138999990899909999
Q 001416 312 CHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVL-AHHKKLRVYCMVAHSLQPHLVAT 387 (1081)
Q Consensus 312 ~h~~~v~~i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~V~~i~~sp~~~~liat 387 (1081)
+|...|++++|+|++.++ +++.|+ ++|++.+... ...+ ..|.. .|.+++|+++ +. +++
T Consensus 322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---------------~~~~~~~h~~-~v~~~~~s~~-~~-l~s 383 (611)
T 1nr0_A 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------NRVFPDVHAT-MITGIKTTSK-GD-LFT 383 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------EECSSCSCSS-CEEEEEECTT-SC-EEE
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE---------------EEECCCCCCC-EEEEEEECCC-CC-EEE
T ss_conf 7888889999918999899995898499997887925---------------6321667765-0789998789-96-999
Q ss_pred EECCCEEEEEECCCCCCCCCCCCC--CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 978994999838999999765579--999997139999559579999732378899888885447889857880357765
Q 001416 388 GTNVGVIISEFDPRSLPAVAPLPT--PSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQI 465 (1081)
Q Consensus 388 gs~dG~Il~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~ 465 (1081)
++.|+.+ ++|+............ ........+.+..++...+... ... ..+...+
T Consensus 384 ~s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~----~~~------v~~~~~~------------ 440 (611)
T 1nr0_A 384 VSWDDHL-KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC----YKH------IAIYSHG------------ 440 (611)
T ss_dssp EETTTEE-EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE----SSE------EEEEETT------------
T ss_pred EECCCCE-EEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEE----CCE------EEEEECC------------
T ss_conf 9848966-8954688543565212001489970799807996999996----763------9998489------------
Q ss_pred HHCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCEEE------EECCCEEEEEEECCCCCCEECC
Q ss_conf 310242134348999876998558987898639999137999627089------6317445999704751000011
Q 001416 466 KQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI------VDSGSARLLAWDTCRDRFAILE 535 (1081)
Q Consensus 466 ~~~~~~i~~~~~~~~~~~l~~S~~Gr~iav~~~~~~~~~i~~~~~~~~------~~~G~~~~~aW~~~~~~~a~l~ 535 (1081)
+ ...+. .... ...+++||+|+++++. ..++...+|+...... ...+....++|++++..+|.-.
T Consensus 441 -~-~~~~~--~~~~-v~~va~spdg~~lasg-s~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 441 -K-LTEVP--ISYN-SSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp -E-EEEEE--CSSC-EEEEEECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred -C-EEEEE--CCCC-CEEEEEECCCCEEEEE-CCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEC
T ss_conf -4-34640--6889-5499992899899996-89973999994599222410157788607999989999899994
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=311.21 Aligned_cols=337 Identities=16% Similarity=0.197 Sum_probs=221.4
Q ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEE--CC--CCCEEEEEECCCCCCCE
Q ss_conf 105178898469999948998999996899299997788918999823774614886--46--88869982047889722
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GA--KLEKLAEGELEHKGKPT 79 (1081)
Q Consensus 4 l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~--~~~~Lasg~~d~~~~~~ 79 (1081)
++.+.+|.+.|.+++|+|+++++++++.||.|++||+.+++++.++.. |...+..+ ++ +...+++++
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~sg~-------- 720 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGS-------- 720 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCCEEEEEE--------
T ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECC-CCCCEEEEEEECCCCCEEEEEEE--------
T ss_conf 887606777789999926999899981899599987799936899958-99737999984089965999980--------
Q ss_pred EEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCCCCCCC
Q ss_conf 650499637999959959999968886224445500147899854101278999499999569299-9990279721244
Q 001416 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1081)
Q Consensus 80 ~~l~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~~~~~~ 158 (1081)
.|+.|++||+.++++ .....+| ...|.+++|+|+++ .+++++.++.+ +||+.+++.....
T Consensus 721 -------------~d~~v~vwd~~~~~~----~~~~~~h-~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 721 -------------NDFFLKLWDLNQKEC----RNTMFGH-TNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp -------------TTSCEEEEETTSSSE----EEEECCC-SSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred -------------CCCEEEEEECCCCCH----HHEECCC-CCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCCEE
T ss_conf -------------897099998999634----2201277-79788999925999-8999978985999968888655302
Q ss_pred C-----------CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCC
Q ss_conf 0-----------02589983699992212269999999997799099999389959999806556435799986527999
Q 001416 159 K-----------QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1081)
Q Consensus 159 ~-----------~~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~~h~~~V~~i~w~~~s~d~ 227 (1081)
. .......+.+++| +|++..+++++ ++.+.+||..++.....+..+|...+.+++ ++|++
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~-----s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~---~sp~~ 852 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSW-----SADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCD---FSPYD 852 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCB-----CTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEE---ECSST
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEE-----CCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEE---ECCCC
T ss_conf 0232102467764456501799999-----78998899975-895999995689723577478777607999---82788
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE------
Q ss_conf 89999958990999986889864210131110036776789999650599888999989980999988998056------
Q 001416 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL------ 301 (1081)
Q Consensus 228 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~------ 301 (1081)
..+++++.|+.|++|++.++.... .+.+|...|.+++|+| ++.++++++.|+.|++|++.+....
T Consensus 853 ~~l~~~~~dg~v~vwd~~~~~~~~------~~~~h~~~v~~v~~sp---dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 853 HLAVIALSQYCVELWNIDSRLKVA------DCRGHLSWVHGVMFSP---DGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp TEEEEECSSSCEEEEETTTTEEEE------EECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CEEEEEECCCEEEEEECCCCCEEE------ECCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 889999479869999867895653------2278766568999989---9998999958972898874665201021133
Q ss_pred -----------------------EE--ECCCCCCCCCCCCEEEEEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCC
Q ss_conf -----------------------67--42777324678786999646999799-997893--499911698555566633
Q 001416 302 -----------------------RR--IKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLC 353 (1081)
Q Consensus 302 -----------------------~~--~~~~~~~~~h~~~v~~i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~ 353 (1081)
.. .........+...+.+++|+|++.++ +++.|+ ++|++..
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~----------- 992 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN----------- 992 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-----------
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC-----------
T ss_conf 103689759986899813776248984476508972567278999958997799986999889997578-----------
Q ss_pred CCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEECCCCCC
Q ss_conf 568888972870478713899999089990999997899499983899999
Q 001416 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1081)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~V~~i~~sp~~~~liatgs~dG~Il~iwd~~~~~ 404 (1081)
......+.+|.. .|++++|+|+ +..+++++.||.| ++||.....
T Consensus 993 ----~~~~~~~~~h~~-~v~~l~~s~d-g~~l~s~~~dg~i-~vwd~~~~~ 1036 (1249)
T 3sfz_A 993 ----NRVFSSGVGHKK-AVRHIQFTAD-GKTLISSSEDSVI-QVWNWQTGD 1036 (1249)
T ss_dssp ----TSCEEECCCCSS-CCCCEEECSS-SSCEEEECSSSBE-EEEETTTTE
T ss_pred ----CCEEEECCCCCC-CEEEEEECCC-CCEEEEECCCCEE-EEEECCCCC
T ss_conf ----723443036777-1689999899-9989998699879-999879996
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=311.05 Aligned_cols=289 Identities=18% Similarity=0.287 Sum_probs=239.2
Q ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCEEEEC
Q ss_conf 10517889846999994899899999689929999778891899982377461488646888699820478897226504
Q 001416 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1081)
Q Consensus 4 l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~Lasg~~d~~~~~~~~l~ 83 (1081)
...+.+|.+.|++++|+|+++++++|+.||.|+|||+.+++.+.++.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--------------------------------- 147 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------------------------------- 147 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC---------------------------------
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---------------------------------
T ss_conf 07661667768999996999989999389859999899993778881---------------------------------
Q ss_pred CCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCCCCCCCCCCC
Q ss_conf 99637999959959999968886224445500147899854101278999499999569299-99902797212440025
Q 001416 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1081)
Q Consensus 84 g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~~~~~~~~~~ 162 (1081)
+| ...|.+++|+|+++ ++++++.|+.+ +||+.+.+ .+.....
T Consensus 148 ---------------------------------~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~--~~~~~~~ 190 (410)
T 1vyh_C 148 ---------------------------------GH-TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFE--CIRTMHG 190 (410)
T ss_dssp ---------------------------------CC-SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSC--EEECCCC
T ss_pred ---------------------------------CC-CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCC--EEEEECC
T ss_conf ---------------------------------66-78687899859999-99999189819999589982--6699828
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 89983699992212269999999997799099999389959999806556435799986527999899999589909999
Q 001416 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1081)
Q Consensus 163 ~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~~h~~~V~~i~w~~~s~d~~~l~sgs~Dg~I~iW 242 (1081)
|...|.+++| +|++.++++|+.|++|++||++++.++..+. +|...|.++. +++++.++++|+.|++|++|
T Consensus 191 h~~~V~~v~~-----~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~---~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 191 HDHNVSSVSI-----MPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVR---PNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp CSSCEEEEEE-----CSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEE---ECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEE---ECCCCCEEEEECCCCEEEEE
T ss_conf 9997789999-----6799999999689969999899994899992-7886289999---98999999999189909999
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECC-----------------CCCEEEEEECCCEEEEEECCCCCEEEEEC
Q ss_conf 8688986421013111003677678999965059-----------------98889999899809999889980566742
Q 001416 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-----------------GSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1081)
Q Consensus 243 d~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~-----------------~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~ 305 (1081)
|+.++.... .+.+|...|.+++|+|... .+.++++++.|+.|++||+.+++++..+
T Consensus 262 d~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~- 334 (410)
T 1vyh_C 262 VVATKECKA------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL- 334 (410)
T ss_dssp ETTTCCEEE------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred ECCCCCEEE------EECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEE-
T ss_conf 898974366------7337874589999858655431012125555566788889999938984999988999669999-
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCC
Q ss_conf 777324678786999646999799-997893--49991169855556663356888897287047871389999908999
Q 001416 306 PVPKLACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP 382 (1081)
Q Consensus 306 ~~~~~~~h~~~v~~i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~i~~sp~~~ 382 (1081)
.+|...|.++.|+|++.++ +++.|+ ++|++.. ..++..+.+|.. .|++++|+|+ +
T Consensus 335 -----~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~---------------~~~~~~~~~h~~-~v~~l~~~~~-~ 392 (410)
T 1vyh_C 335 -----VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---------------KRCMKTLNAHEH-FVTSLDFHKT-A 392 (410)
T ss_dssp -----ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT---------------SCCCEEEECCSS-CEEEEEECSS-S
T ss_pred -----ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC---------------CCEEEEECCCCC-CEEEEEECCC-C
T ss_conf -----77888589999949989999995979299998999---------------906899847778-6899998289-9
Q ss_pred EEEEEEECCCEEEEEECCC
Q ss_conf 0999997899499983899
Q 001416 383 HLVATGTNVGVIISEFDPR 401 (1081)
Q Consensus 383 ~liatgs~dG~Il~iwd~~ 401 (1081)
.++++|+.||.| ++|+.+
T Consensus 393 ~~l~sgs~D~~i-~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTV-KVWECR 410 (410)
T ss_dssp SCEEEEETTSEE-EEEC--
T ss_pred CEEEEEECCCCE-EEEECC
T ss_conf 999999279948-997379
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=306.53 Aligned_cols=318 Identities=18% Similarity=0.278 Sum_probs=168.8
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEE--CCCCCEEEEEECCCCCCCEE
Q ss_conf 2105178898469999948998999996899299997788918999823774614886--46888699820478897226
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTE 80 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~v--s~~~~~Lasg~~d~~~~~~~ 80 (1081)
.++.|.+|.+.|++++|+|++++|++++.|+.|+|||. +++++.++. +|...+..+ +|+++.+++++.
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~-------- 118 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD-------- 118 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEET--------
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEECC--------
T ss_conf 89999689899899999899999999969897999989-997899997-89998899999899998999807--------
Q ss_pred EECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEE-EEECCCCCCCCCC
Q ss_conf 504996379999599599999688862244455001478998541012789994999995692999-9902797212440
Q 001416 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPK 159 (1081)
Q Consensus 81 ~l~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i~-wd~~t~~~~~~~~ 159 (1081)
|+.+++|+..... ......+ ...+..+.++|+++ .++.++.+.... |+... .....
T Consensus 119 -------------d~~~~~~~~~~~~-----~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~ 175 (577)
T 2ymu_A 119 -------------DKTVKLWNRNGQL-----LQTLTGH-SSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG---QLLQT 175 (577)
T ss_dssp -------------TSCEEEEETTCCE-----EEEECCC-SSCEEEEEECTTSS-CEEEEETTSEEEEECTTS---CEEEE
T ss_pred -------------CCCEEECCCCCCE-----EEECCCC-CCCEEEEEEECCCC-CCEECCCCCCEECCCCCE---EEEEE
T ss_conf -------------9833520235520-----0110477-77435554203776-320025553100000000---00000
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 02589983699992212269999999997799099999389959999806556435799986527999899999589909
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~~h~~~V~~i~w~~~s~d~~~l~sgs~Dg~I 239 (1081)
...+...+.++.+ +|++.++++++.|+.|++||. +++.+..+. +|...|.+++ ++|++..+++++.|+.|
T Consensus 176 ~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~---~s~dg~~l~~~~~d~~i 245 (577)
T 2ymu_A 176 LTGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVA---FSPDGQTIASASDDKTV 245 (577)
T ss_dssp EECCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSCE
T ss_pred CCCCCCCEEEEEE-----CCCCCEEEEECCCCEEEEEEC-CCCEEEEEE-CCCCCEEEEE---ECCCCCEEEEEECCCEE
T ss_conf 2687763566541-----699778999859998999949-996899994-6889889999---97999999999189989
Q ss_pred EEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf 99986889864210131110036776789999650599888999989980999988998056674277732467878699
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 240 ~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
++|+... +. ...+.+|...|++++|+| ++..+++++.|+.|++|+.. ++.+..+ .+|...+++
T Consensus 246 ~~w~~~~-~~------~~~~~~~~~~v~~v~~~~---d~~~l~~~~~d~~i~~w~~~-~~~~~~~------~~h~~~v~~ 308 (577)
T 2ymu_A 246 KLWNRNG-QL------LQTLTGHSSSVNGVAFRP---DGQTIASASDDKTVKLWNRN-GQLLQTL------TGHSSSVWG 308 (577)
T ss_dssp EEECTTS-CE------EEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETT-SCEEEEE------CCCSSCEEE
T ss_pred EEEECCC-CE------EEEEECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEEE------ECCCCCEEE
T ss_conf 9995999-79------999806889879999968---99999999599979999489-9589997------068897699
Q ss_pred EEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCEEEE
Q ss_conf 9646999799-997893--4999116985555666335688889728704787138999990899909999978994999
Q 001416 320 HPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1081)
Q Consensus 320 i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~i~~sp~~~~liatgs~dG~Il~ 396 (1081)
++|+|++..+ +++.|+ ++|+... .....+..|.. .+++++|+|+ +..+++|+.||.+ +
T Consensus 309 ~~~~~~~~~l~t~~~d~~i~~w~~~~----------------~~~~~~~~~~~-~v~~~~~s~~-g~~l~~~~~dg~v-~ 369 (577)
T 2ymu_A 309 VAFSPDGQTIASASDDKTVKLWNRNG----------------QHLQTLTGHSS-SVWGVAFSPD-GQTIASASDDKTV-K 369 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS----------------CEEEEECCCSS-CEEEEEECTT-SSEEEEEETTSEE-E
T ss_pred EEECCCCCEEEEEECCCEEEEEECCC----------------CEEEEEECCCC-CEEEEEECCC-CCEEEEEECCCEE-E
T ss_conf 99999999999996999599996999----------------72578747889-7799999899-9999999699989-9
Q ss_pred EEC
Q ss_conf 838
Q 001416 397 EFD 399 (1081)
Q Consensus 397 iwd 399 (1081)
+||
T Consensus 370 ~~~ 372 (577)
T 2ymu_A 370 LWN 372 (577)
T ss_dssp EEE
T ss_pred EEC
T ss_conf 990
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=295.70 Aligned_cols=288 Identities=19% Similarity=0.251 Sum_probs=236.7
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCEEEE
Q ss_conf 21051788984699999489989999968992999977889189998237746148864688869982047889722650
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~Lasg~~d~~~~~~~~l 82 (1081)
..+.+.||.+.|++++|+|++++|++|+.||.|++||..+++.+..+..+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~------------------------------ 96 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR------------------------------ 96 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS------------------------------
T ss_pred HHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC------------------------------
T ss_conf 10010487783689998899999999818896899989998743376038------------------------------
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCCC--CCCCC
Q ss_conf 499637999959959999968886224445500147899854101278999499999569299-999027972--12440
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RDIPK 159 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~~--~~~~~ 159 (1081)
...|.+++|+|+++ ++++++.++.+ +|++.+... .....
T Consensus 97 -------------------------------------~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 97 -------------------------------------SSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp -------------------------------------SSCEEEEEECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred -------------------------------------CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf -------------------------------------86188999999999-9999808981999979668886136778
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 02589983699992212269999999997799099999389959999806556435799986527999899999589909
Q 001416 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1081)
Q Consensus 160 ~~~~~~~I~~i~~~p~~~sp~~~~l~tgs~Dg~I~iwd~~~~~~i~~~~~~h~~~V~~i~w~~~s~d~~~l~sgs~Dg~I 239 (1081)
...|...+.++.|. +++ .+++++.|+.|++||+.+++.+..+. +|...|.+++ ++|++.++++|+.|++|
T Consensus 139 ~~~h~~~v~~~~~~-----~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~---~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 139 LAGHTGYLSCCRFL-----DDN-QIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLS---LAPDTRLFVSGACDASA 208 (340)
T ss_dssp EECCSSCEEEEEEE-----ETT-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE---ECTTSSEEEEEETTSCE
T ss_pred ECCCCCCEEEEEEC-----CCC-CEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCCE
T ss_conf 44877638999987-----999-69999899929999899991889976-9998668999---98999999999389939
Q ss_pred EEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf 99986889864210131110036776789999650599888999989980999988998056674277732467878699
Q 001416 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1081)
Q Consensus 240 ~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~~~~h~~~v~~ 319 (1081)
++||++++.... .+.+|...|++++|+| ++.+|++++.|++|++||+++++.+..+.. ..+...+.+
T Consensus 209 ~~wd~~~~~~~~------~~~~h~~~v~~v~~~p---~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----~~~~~~v~~ 275 (340)
T 1got_B 209 KLWDVREGMCRQ------TFTGHESDINAICFFP---NGNAFATGSDDATCRLFDLRADQELMTYSH----DNIICGITS 275 (340)
T ss_dssp EEEETTTCSEEE------EECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECC----TTCCSCEEE
T ss_pred EEEECCCCEEEE------EECCCCCCEEEEEECC---CCCEEEEECCCCCEEEEECCCCCEEEEECC----CCCCCCEEE
T ss_conf 997789981678------9748768779999949---999899974898199998899918999726----885241699
Q ss_pred EEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCEEEE
Q ss_conf 9646999799-997893--4999116985555666335688889728704787138999990899909999978994999
Q 001416 320 HPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1081)
Q Consensus 320 i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~~i~~sp~~~~liatgs~dG~Il~ 396 (1081)
++|+|++.++ +++.|+ ++|++.. ......+.+|.. +|++++|+|+ +.++++|+.||.| +
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~---------------~~~~~~~~~h~~-~v~~~~~s~d-g~~l~s~s~D~~i-~ 337 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALK---------------ADRAGVLAGHDN-RVSCLGVTDD-GMAVATGSWDSFL-K 337 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT---------------CCEEEEEECCSS-CEEEEEECTT-SSCEEEEETTSCE-E
T ss_pred EEECCCCCEEEEECCCCEEEEEECCC---------------CCEEEEEECCCC-CEEEEEECCC-CCEEEEECCCCCE-E
T ss_conf 99989999999977999099988413---------------838658505778-4889998299-9989997288618-9
Q ss_pred EEC
Q ss_conf 838
Q 001416 397 EFD 399 (1081)
Q Consensus 397 iwd 399 (1081)
+||
T Consensus 338 iWd 340 (340)
T 1got_B 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred ECC
T ss_conf 559
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=294.51 Aligned_cols=300 Identities=15% Similarity=0.175 Sum_probs=227.4
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCEEEE
Q ss_conf 21051788984699999489989999968992999977889189998237746148864688869982047889722650
Q 001416 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1081)
Q Consensus 3 ~l~~l~gH~~~V~~iafsp~g~~Lasgs~dg~I~IWd~~t~~~i~~~~~~~~~~v~~vs~~~~~Lasg~~d~~~~~~~~l 82 (1081)
..+.|.||.+.|++++|+|++++|+||+.||+|+|||..+++.+..+..+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h------------------------------ 107 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH------------------------------ 107 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC------------------------------
T ss_pred EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECC------------------------------
T ss_conf 82000045347789999689998999918980999878888601488559------------------------------
Q ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEE-EEEECCCC-----CCC
Q ss_conf 499637999959959999968886224445500147899854101278999499999569299-99902797-----212
Q 001416 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-----GRD 156 (1081)
Q Consensus 83 ~g~~V~~v~f~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~~V~si~fspdg~~~lvs~s~d~~i-~wd~~t~~-----~~~ 156 (1081)
...|.+++|+|+++ ++++++.|+.+ +||+.+.. ...
T Consensus 108 -------------------------------------~~~v~~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 108 -------------------------------------CPWVMECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp -------------------------------------CTTCCCCEECTTSS-EEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred -------------------------------------CCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf -------------------------------------98789999989999-8999547985899989777555677331
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCC-CCEEEEEECCCEEEEEECCCCEEEEEEE----CCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 440025899836999922122699-9999999779909999938995999980----65564357999865279998999
Q 001416 157 IPKQELDNKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYT----GGHKGSISCLMTFMASSGEALLV 231 (1081)
Q Consensus 157 ~~~~~~~~~~I~~i~~~p~~~sp~-~~~l~tgs~Dg~I~iwd~~~~~~i~~~~----~~h~~~V~~i~w~~~s~d~~~l~ 231 (1081)
......|...+.++.|. |+ +..+++|+.|++|++||+.+++.+..+. .+|...|.++.| .++++++|+
T Consensus 150 ~~~~~gh~~~v~~~~~~-----~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~ 222 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYV-----PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI--NSLNANMFI 222 (380)
T ss_dssp CCBCCCCSSCCCCCBCC-----SSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE--CSSSCCEEE
T ss_pred EEECCCCCCCEEEEEEE-----CCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE--ECCCCCEEE
T ss_conf 26406897546899996-----48997899977998199998677957899605667887567699992--069999899
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC-C
Q ss_conf 995899099998688986421013111003677678999965059988899998998099998899805667427773-2
Q 001416 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK-L 310 (1081)
Q Consensus 232 sgs~Dg~I~iWd~~~~~~~~~~~~~~~l~~h~~~V~~i~fsp~~~~~~~Lvsgs~Dg~I~iWDl~t~~~~~~~~~~~~-~ 310 (1081)
+|+.|++|++||++.... ....+.+|...|++++|+| ++.+|++++.|++|++||+++++.+..+..... .
T Consensus 223 sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p---~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFP---DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp EEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECT---TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred EEECCCEEEEEECCCCCC-----CEEEECCCCCCEEEEEEEC---CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 997898699997888973-----4699887488757999916---99969998389969999888996889861565556
Q ss_pred CCCCCCEEEEEECCCCCEE-EEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCEEE----CCCCCCCEEEEEEECCCCE
Q ss_conf 4678786999646999799-997893--49991169855556663356888897287----0478713899999089990
Q 001416 311 ACHSVASWCHPRAPNLDIL-TCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVL----AHHKKLRVYCMVAHSLQPH 383 (1081)
Q Consensus 311 ~~h~~~v~~i~~spd~~ll-s~s~D~--~IWdi~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~V~~i~~sp~~~~ 383 (1081)
..+...+.+++|+|++.++ +++.|+ ++||..... ....+ .+|.. .|++++|+|+ +.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------------~~~~~~~~~~~h~~-~v~~l~~s~d-g~ 357 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---------------MVLNLGTLQNSHEG-RISCLGLSSD-GS 357 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC---------------EEEEECCSCSSCCC-CCCEEEECSS-SS
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC---------------EEEEEECCCCCCCC-CEEEEEECCC-CC
T ss_conf 6556863899988999989999799979999887781---------------57897023677778-4579998999-99
Q ss_pred EEEEEECCCEEEEEECCCCC
Q ss_conf 99999789949998389999
Q 001416 384 LVATGTNVGVIISEFDPRSL 403 (1081)
Q Consensus 384 liatgs~dG~Il~iwd~~~~ 403 (1081)
++++|+.||.| ++|++...
T Consensus 358 ~l~sgs~D~~i-~iW~~~~~ 376 (380)
T 3iz6_a 358 ALCTGSWDKNL-KIWAFSGH 376 (380)
T ss_dssp EEEEECTTSCE-EEEECCSS
T ss_pred EEEEEECCCCE-EEEECCCC
T ss_conf 89996089988-99953787
Done!