BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001419
(1080 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 70 YTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDKLL 125
+ + +E+FS++S+ L F V W I++ P+ H + FL C A D
Sbjct: 33 FQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS-- 89
Query: 126 PGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKDGD 181
WS AQ + ++N RD +KS H F+ KE+DWG+ FM S+V+D GF D D
Sbjct: 90 TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149
Query: 182 TLIIKAQVQ 190
+ + VQ
Sbjct: 150 KVTFEVFVQ 158
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDK 123
+ + +E+FS++S+ L F V W I++ P+ H + FL C A D
Sbjct: 21 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 79
Query: 124 LLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKD 179
WS AQ + ++N RD +KS H F+ KE+DWG+ FM S+V+D GF D
Sbjct: 80 T--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFID 137
Query: 180 GDTLIIKAQVQ 190
D + + VQ
Sbjct: 138 DDKVTFEVFVQ 148
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDK 123
+ + +E+FS++S+ L F V W I++ P+ H + FL C A D
Sbjct: 21 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 79
Query: 124 LLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKD 179
WS AQ + ++N RD +KS H F+ KE+DWG+ FM S+V+D GF D
Sbjct: 80 --TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFID 137
Query: 180 GDTLIIKAQVQ 190
D + + VQ
Sbjct: 138 DDKVTFEVFVQ 148
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDK 123
+ + +E+FS++S+ L F V W I++ P+ H + FL C A D
Sbjct: 21 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 79
Query: 124 LLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKD 179
WS AQ + ++N RD +KS H F+ KE+DWG+ FM S+V+D GF D
Sbjct: 80 T--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFID 137
Query: 180 GDTLIIKAQVQ 190
D + + VQ
Sbjct: 138 DDKVTFEVFVQ 148
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDK 123
+ + +E+FS++S+ L F V W I++ P+ H + FL C A D
Sbjct: 19 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 77
Query: 124 LLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKD 179
WS AQ + ++N RD +KS H F+ KE+DWG+ FM S+V+D GF D
Sbjct: 78 T--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFID 135
Query: 180 GDTLIIKAQVQ 190
D + + VQ
Sbjct: 136 DDKVTFEVFVQ 146
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDK 123
+ + +E+FS++S+ L F V W I++ P+ H + FL C A D
Sbjct: 7 ATFQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 65
Query: 124 LLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKD 179
WS AQ + ++N RD +KS H F+ KE+DWG+ FM S+V+D GF D
Sbjct: 66 T--SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFID 123
Query: 180 GDTLIIKAQVQ 190
D + + VQ
Sbjct: 124 DDKVTFEVFVQ 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,054,331
Number of Sequences: 62578
Number of extensions: 1038006
Number of successful extensions: 1537
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 8
length of query: 1080
length of database: 14,973,337
effective HSP length: 109
effective length of query: 971
effective length of database: 8,152,335
effective search space: 7915917285
effective search space used: 7915917285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)