Query 001419
Match_columns 1080
No_of_seqs 356 out of 1242
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 00:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5077 Ubiquitin carboxyl-ter 99.9 1.5E-23 3.3E-28 244.1 13.2 180 64-259 35-227 (1089)
2 cd03772 MATH_HAUSP Herpesvirus 99.9 1.1E-22 2.4E-27 198.8 14.7 125 67-193 2-134 (137)
3 cd03775 MATH_Ubp21p Ubiquitin- 99.9 9E-22 1.9E-26 192.1 13.7 121 69-190 2-134 (134)
4 cd03773 MATH_TRIM37 Tripartite 99.8 6.6E-20 1.4E-24 176.9 12.7 120 66-190 3-130 (132)
5 cd00121 MATH MATH (meprin and 99.8 1.9E-19 4.2E-24 166.4 14.2 123 68-190 1-126 (126)
6 cd03774 MATH_SPOP Speckle-type 99.8 2.8E-19 6E-24 175.0 13.9 122 67-193 4-138 (139)
7 cd00270 MATH_TRAF_C Tumor Necr 99.8 1.5E-19 3.2E-24 178.2 10.5 123 68-190 1-149 (149)
8 cd03776 MATH_TRAF6 Tumor Necro 99.8 5.4E-19 1.2E-23 175.1 10.2 123 68-190 1-147 (147)
9 cd03781 MATH_TRAF4 Tumor Necro 99.7 7.1E-18 1.5E-22 169.2 12.3 122 68-189 1-153 (154)
10 cd03780 MATH_TRAF5 Tumor Necro 99.7 6.3E-18 1.4E-22 169.6 11.8 122 68-189 1-147 (148)
11 PF00917 MATH: MATH domain; I 99.7 2.8E-18 6.2E-23 159.7 8.0 114 74-191 1-119 (119)
12 cd03779 MATH_TRAF1 Tumor Necro 99.7 8.7E-18 1.9E-22 168.6 11.7 122 68-189 1-146 (147)
13 cd03777 MATH_TRAF3 Tumor Necro 99.7 2.2E-17 4.8E-22 171.4 13.1 127 65-191 36-185 (186)
14 cd03778 MATH_TRAF2 Tumor Necro 99.7 1.4E-16 3.1E-21 162.5 11.8 125 65-189 16-163 (164)
15 cd03771 MATH_Meprin Meprin fam 99.7 4.7E-16 1E-20 159.2 13.1 122 68-189 2-166 (167)
16 smart00061 MATH meprin and TRA 99.6 2.4E-15 5.2E-20 134.5 10.4 93 70-168 2-95 (95)
17 KOG1863 Ubiquitin carboxyl-ter 99.6 8.2E-15 1.8E-19 184.9 11.8 236 67-341 26-268 (1093)
18 cd03783 MATH_Meprin_Alpha Mepr 99.3 4.5E-12 9.7E-17 129.9 10.1 122 68-189 2-166 (167)
19 cd03782 MATH_Meprin_Beta Mepri 99.3 1.5E-11 3.2E-16 125.9 10.2 122 68-189 2-166 (167)
20 KOG1987 Speckle-type POZ prote 98.1 5.4E-05 1.2E-09 83.0 15.6 121 68-197 4-131 (297)
21 PHA03098 kelch-like protein; P 97.8 1.4E-05 3E-10 94.3 3.0 136 209-366 5-154 (534)
22 PHA02713 hypothetical protein; 97.6 3.9E-05 8.4E-10 92.2 3.4 133 207-368 19-174 (557)
23 PHA02790 Kelch-like protein; P 97.2 0.00011 2.4E-09 86.7 1.7 121 206-347 15-153 (480)
24 KOG2412 Nuclear-export-signal 97.2 0.0035 7.7E-08 74.3 13.0 56 360-415 208-264 (591)
25 KOG4441 Proteins containing BT 97.0 0.00046 1E-08 83.5 3.8 141 208-370 31-187 (571)
26 PF00651 BTB: BTB/POZ domain; 97.0 0.0019 4.1E-08 60.0 6.6 96 208-341 5-108 (111)
27 PTZ00266 NIMA-related protein 96.6 0.023 4.9E-07 73.1 14.1 7 923-929 868-874 (1021)
28 KOG4364 Chromatin assembly fac 96.6 0.0073 1.6E-07 72.9 9.1 7 446-452 380-386 (811)
29 KOG1029 Endocytic adaptor prot 96.6 0.0075 1.6E-07 73.7 9.1 26 273-298 240-269 (1118)
30 PTZ00121 MAEBL; Provisional 96.5 0.018 3.8E-07 74.3 11.8 7 113-119 824-830 (2084)
31 KOG4364 Chromatin assembly fac 96.4 0.03 6.5E-07 67.9 13.0 13 441-453 379-391 (811)
32 PTZ00121 MAEBL; Provisional 96.4 0.019 4.2E-07 73.9 11.5 9 28-36 573-581 (2084)
33 KOG0163 Myosin class VI heavy 96.1 0.026 5.7E-07 69.0 10.1 33 365-397 927-959 (1259)
34 PRK00247 putative inner membra 95.7 0.067 1.5E-06 63.2 11.1 8 484-491 416-423 (429)
35 PTZ00266 NIMA-related protein 95.4 0.15 3.2E-06 66.0 13.7 14 914-927 893-906 (1021)
36 cd02666 Peptidase_C19J A subfa 95.4 0.004 8.6E-08 71.3 -0.3 28 229-256 5-32 (343)
37 KOG2002 TPR-containing nuclear 95.3 0.42 9.1E-06 60.7 16.6 25 237-261 719-743 (1018)
38 KOG1029 Endocytic adaptor prot 95.1 0.079 1.7E-06 65.3 9.4 9 781-789 857-865 (1118)
39 KOG0163 Myosin class VI heavy 94.9 0.32 6.9E-06 60.2 13.3 9 483-491 1035-1043(1259)
40 smart00225 BTB Broad-Complex, 94.9 0.068 1.5E-06 46.3 6.0 63 215-298 1-65 (90)
41 KOG2412 Nuclear-export-signal 94.6 0.14 3.1E-06 61.4 9.7 10 925-934 522-531 (591)
42 KOG4350 Uncharacterized conser 94.4 0.086 1.9E-06 61.3 6.9 52 206-262 37-90 (620)
43 KOG0345 ATP-dependent RNA heli 94.2 0.084 1.8E-06 62.6 6.4 17 283-299 436-452 (567)
44 KOG2891 Surface glycoprotein [ 93.6 0.29 6.2E-06 54.7 8.8 15 398-412 389-403 (445)
45 KOG2072 Translation initiation 93.4 0.69 1.5E-05 58.0 12.4 23 331-353 743-765 (988)
46 PF05262 Borrelia_P83: Borreli 93.2 0.2 4.3E-06 60.2 7.5 17 235-253 111-127 (489)
47 KOG3054 Uncharacterized conser 92.8 0.35 7.7E-06 53.3 8.0 38 478-521 213-250 (299)
48 PRK00247 putative inner membra 92.6 0.52 1.1E-05 56.0 9.6 7 274-280 257-263 (429)
49 PF05262 Borrelia_P83: Borreli 92.4 0.71 1.5E-05 55.7 10.5 10 134-143 9-18 (489)
50 KOG2891 Surface glycoprotein [ 92.1 1.4 3.1E-05 49.4 11.6 25 408-432 386-411 (445)
51 KOG2072 Translation initiation 91.7 0.55 1.2E-05 58.8 8.6 28 353-380 757-785 (988)
52 CHL00118 atpG ATP synthase CF0 91.3 2.1 4.6E-05 43.9 11.3 30 357-386 49-78 (156)
53 PRK13428 F0F1 ATP synthase sub 91.2 1.5 3.2E-05 52.5 11.3 49 335-384 7-55 (445)
54 TIGR03321 alt_F1F0_F0_B altern 91.0 2 4.2E-05 47.3 11.3 50 334-384 10-59 (246)
55 PF07946 DUF1682: Protein of u 90.8 0.63 1.4E-05 53.2 7.5 29 237-272 137-165 (321)
56 cd02671 Peptidase_C19O A subfa 90.6 0.068 1.5E-06 60.9 -0.4 27 229-255 28-54 (332)
57 PRK14472 F0F1 ATP synthase sub 90.1 3.2 6.8E-05 43.4 11.3 53 332-385 21-73 (175)
58 PRK14471 F0F1 ATP synthase sub 90.0 3.2 7E-05 42.7 11.3 52 333-385 12-63 (164)
59 PF07946 DUF1682: Protein of u 89.9 0.72 1.6E-05 52.7 7.0 8 180-187 110-117 (321)
60 cd02664 Peptidase_C19H A subfa 89.9 0.098 2.1E-06 58.9 0.1 28 229-256 3-30 (327)
61 PRK09510 tolA cell envelope in 89.9 1.2 2.5E-05 52.5 8.7 13 235-247 19-31 (387)
62 KOG3054 Uncharacterized conser 89.8 1.8 3.8E-05 48.0 9.4 8 434-441 175-182 (299)
63 PRK09174 F0F1 ATP synthase sub 89.7 3 6.5E-05 45.1 11.1 55 331-386 55-109 (204)
64 PRK06231 F0F1 ATP synthase sub 89.5 3.5 7.5E-05 44.5 11.4 51 332-383 51-101 (205)
65 KOG0297 TNF receptor-associate 89.5 0.24 5.1E-06 58.1 2.8 76 66-141 278-365 (391)
66 PRK14474 F0F1 ATP synthase sub 89.4 2.9 6.3E-05 46.4 11.1 44 334-380 10-55 (250)
67 PRK13453 F0F1 ATP synthase sub 89.3 4 8.6E-05 42.7 11.3 52 333-385 22-73 (173)
68 PRK08475 F0F1 ATP synthase sub 89.0 3.9 8.4E-05 42.7 11.1 51 332-385 25-77 (167)
69 PRK07352 F0F1 ATP synthase sub 88.9 4.4 9.5E-05 42.3 11.3 49 335-384 25-73 (174)
70 PRK13454 F0F1 ATP synthase sub 88.8 3.8 8.2E-05 43.3 10.9 53 331-384 33-85 (181)
71 cd02668 Peptidase_C19L A subfa 88.7 0.12 2.6E-06 58.0 -0.3 27 229-255 3-29 (324)
72 PRK07353 F0F1 ATP synthase sub 88.2 5.8 0.00013 39.6 11.3 30 356-385 31-60 (140)
73 PRK13455 F0F1 ATP synthase sub 88.1 3.8 8.1E-05 43.2 10.4 47 336-385 33-82 (184)
74 PRK13460 F0F1 ATP synthase sub 88.1 5.8 0.00013 41.4 11.6 52 332-384 19-70 (173)
75 COG3064 TolA Membrane protein 88.1 1.9 4.2E-05 49.2 8.5 17 412-428 166-182 (387)
76 TIGR02794 tolA_full TolA prote 87.7 1.3 2.8E-05 51.5 7.1 16 234-249 7-22 (346)
77 PRK14475 F0F1 ATP synthase sub 87.6 5.4 0.00012 41.5 11.0 31 356-386 36-66 (167)
78 CHL00019 atpF ATP synthase CF0 87.6 5.7 0.00012 41.9 11.3 49 335-384 30-78 (184)
79 PRK06569 F0F1 ATP synthase sub 87.5 9.3 0.0002 40.1 12.5 54 332-386 13-66 (155)
80 cd02659 peptidase_C19C A subfa 87.4 0.18 3.8E-06 56.3 0.1 29 229-257 6-34 (334)
81 COG4499 Predicted membrane pro 87.2 1.2 2.5E-05 52.1 6.4 19 87-105 48-71 (434)
82 PRK14473 F0F1 ATP synthase sub 87.0 6.4 0.00014 40.6 11.0 28 357-384 35-62 (164)
83 COG3064 TolA Membrane protein 86.9 3.1 6.6E-05 47.7 9.2 18 234-251 18-35 (387)
84 KOG2357 Uncharacterized conser 86.5 3.8 8.2E-05 48.5 9.9 24 166-189 190-218 (440)
85 PF06098 Radial_spoke_3: Radia 86.0 9.3 0.0002 43.7 12.5 47 333-380 130-178 (291)
86 PRK08476 F0F1 ATP synthase sub 85.9 9.1 0.0002 39.0 11.3 30 356-385 33-62 (141)
87 PRK06568 F0F1 ATP synthase sub 85.8 8.4 0.00018 40.2 11.2 50 334-386 9-60 (154)
88 cd02657 Peptidase_C19A A subfa 85.7 0.27 5.8E-06 54.3 0.3 27 229-255 3-29 (305)
89 cd02667 Peptidase_C19K A subfa 85.3 0.27 5.8E-06 54.2 0.1 27 229-255 3-29 (279)
90 cd02661 Peptidase_C19E A subfa 85.2 0.3 6.5E-06 53.1 0.4 27 229-255 5-31 (304)
91 PRK13461 F0F1 ATP synthase sub 85.2 11 0.00023 38.7 11.6 47 332-379 8-54 (159)
92 cd02658 Peptidase_C19B A subfa 85.2 0.28 6.1E-06 54.3 0.2 27 229-255 3-29 (311)
93 cd02662 Peptidase_C19F A subfa 84.7 0.33 7.2E-06 52.4 0.5 27 229-255 3-29 (240)
94 TIGR01144 ATP_synt_b ATP synth 84.4 11 0.00025 37.9 11.2 24 357-380 22-45 (147)
95 TIGR02794 tolA_full TolA prote 82.8 6.6 0.00014 45.7 9.9 14 281-294 45-58 (346)
96 KOG3809 Microtubule-binding pr 82.7 4.2 9.1E-05 48.3 8.1 29 486-514 246-274 (583)
97 KOG0742 AAA+-type ATPase [Post 82.7 14 0.0003 44.4 12.2 13 760-774 399-411 (630)
98 cd02660 Peptidase_C19D A subfa 82.6 0.44 9.5E-06 53.0 0.3 28 229-256 4-31 (328)
99 PF06637 PV-1: PV-1 protein (P 82.5 14 0.00029 43.6 11.9 75 342-416 286-366 (442)
100 PRK05759 F0F1 ATP synthase sub 82.5 18 0.00039 36.7 11.8 47 333-380 8-54 (156)
101 cd02663 Peptidase_C19G A subfa 82.4 0.41 8.9E-06 53.2 0.0 18 229-246 3-20 (300)
102 PF00443 UCH: Ubiquitin carbox 81.8 0.54 1.2E-05 49.0 0.7 28 229-256 5-32 (269)
103 KOG4848 Extracellular matrix-a 81.7 13 0.00027 40.3 10.5 17 368-384 156-172 (225)
104 PRK06568 F0F1 ATP synthase sub 81.1 18 0.00039 37.8 11.3 35 350-384 40-74 (154)
105 PF07888 CALCOCO1: Calcium bin 80.9 72 0.0016 39.6 17.8 61 406-467 431-494 (546)
106 cd02669 Peptidase_C19M A subfa 80.8 0.53 1.1E-05 55.7 0.2 27 229-255 123-149 (440)
107 KOG4786 Ubinuclein, nuclear pr 80.7 1.3 2.9E-05 54.7 3.4 79 348-426 673-754 (1136)
108 KOG1103 Predicted coiled-coil 80.6 9.9 0.00022 44.2 9.9 19 280-298 64-82 (561)
109 PRK14474 F0F1 ATP synthase sub 80.6 24 0.00053 39.3 12.9 21 335-355 15-35 (250)
110 KOG2963 RNA-binding protein re 80.4 3.4 7.4E-05 47.9 6.3 12 94-105 91-102 (405)
111 KOG2075 Topoisomerase TOP1-int 79.9 7 0.00015 47.1 8.8 119 209-375 110-241 (521)
112 KOG3634 Troponin [Cytoskeleton 79.2 3.9 8.4E-05 47.1 6.2 60 365-424 83-143 (361)
113 cd02672 Peptidase_C19P A subfa 79.0 0.76 1.6E-05 51.2 0.6 33 211-253 10-43 (268)
114 KOG4661 Hsp27-ERE-TATA-binding 78.9 16 0.00036 44.7 11.4 30 401-431 665-694 (940)
115 KOG3915 Transcription regulato 78.9 16 0.00035 43.9 11.1 22 345-366 507-528 (641)
116 KOG2002 TPR-containing nuclear 78.6 9.7 0.00021 49.2 9.9 17 326-342 781-797 (1018)
117 TIGR03321 alt_F1F0_F0_B altern 78.6 31 0.00067 38.1 12.9 16 335-350 15-30 (246)
118 PF06936 Selenoprotein_S: Sele 78.5 12 0.00026 40.4 9.3 26 329-354 33-58 (190)
119 KOG0556 Aspartyl-tRNA syntheta 78.4 2.4 5.1E-05 50.1 4.3 20 449-469 68-87 (533)
120 PF10211 Ax_dynein_light: Axon 78.3 39 0.00084 36.3 13.1 45 326-370 76-120 (189)
121 PF09727 CortBP2: Cortactin-bi 78.3 19 0.0004 39.1 10.6 21 359-379 107-127 (192)
122 PRK09174 F0F1 ATP synthase sub 78.0 37 0.00079 36.9 12.9 22 336-357 64-85 (204)
123 COG5269 ZUO1 Ribosome-associat 76.7 18 0.00039 41.1 10.2 58 316-375 185-243 (379)
124 PRK09173 F0F1 ATP synthase sub 76.6 27 0.00059 35.9 11.0 29 356-384 28-56 (159)
125 PRK13460 F0F1 ATP synthase sub 76.5 47 0.001 34.8 12.9 26 332-357 23-48 (173)
126 PF09756 DDRGK: DDRGK domain; 75.8 0.87 1.9E-05 48.8 0.0 26 394-419 33-58 (188)
127 KOG4691 Uncharacterized conser 75.7 20 0.00044 38.9 9.9 20 376-395 123-142 (227)
128 PRK13461 F0F1 ATP synthase sub 75.6 55 0.0012 33.7 12.9 20 336-355 16-35 (159)
129 PRK14472 F0F1 ATP synthase sub 75.5 52 0.0011 34.5 12.9 19 336-354 29-47 (175)
130 KOG1924 RhoA GTPase effector D 74.9 8.5 0.00018 48.7 7.8 19 336-358 975-993 (1102)
131 PRK13453 F0F1 ATP synthase sub 74.8 55 0.0012 34.4 12.9 26 331-356 24-49 (173)
132 KOG4031 Vesicle coat protein c 74.8 12 0.00026 40.9 8.0 22 360-381 112-134 (216)
133 KOG1363 Predicted regulator of 74.6 9.1 0.0002 46.3 7.9 21 361-381 300-320 (460)
134 KOG0742 AAA+-type ATPase [Post 74.4 33 0.00072 41.4 12.0 6 787-792 384-389 (630)
135 KOG0345 ATP-dependent RNA heli 74.2 5.3 0.00011 48.2 5.7 40 330-372 453-495 (567)
136 COG0711 AtpF F0F1-type ATP syn 74.2 57 0.0012 34.1 12.7 30 356-385 32-61 (161)
137 KOG0112 Large RNA-binding prot 74.0 3.7 8.1E-05 52.3 4.7 14 447-460 782-795 (975)
138 PHA00451 protein kinase 74.0 9.9 0.00022 43.2 7.4 11 363-373 230-240 (362)
139 PF06098 Radial_spoke_3: Radia 73.7 23 0.00049 40.7 10.4 17 358-374 141-157 (291)
140 KOG1150 Predicted molecular ch 73.6 8.8 0.00019 41.9 6.7 45 387-431 168-214 (250)
141 PTZ00234 variable surface prot 72.8 4.8 0.00011 48.2 5.1 28 771-798 340-375 (433)
142 KOG2357 Uncharacterized conser 72.6 25 0.00053 42.0 10.5 23 225-251 229-251 (440)
143 PF00430 ATP-synt_B: ATP synth 72.4 13 0.00028 36.3 7.1 35 339-378 13-47 (132)
144 KOG3859 Septins (P-loop GTPase 72.1 23 0.00049 40.8 9.6 15 352-366 318-332 (406)
145 PF15236 CCDC66: Coiled-coil d 71.8 20 0.00044 37.7 8.7 20 365-384 81-100 (157)
146 PF06936 Selenoprotein_S: Sele 71.5 16 0.00035 39.5 8.1 9 351-359 78-86 (190)
147 PRK13454 F0F1 ATP synthase sub 70.9 31 0.00068 36.6 10.1 26 333-358 39-64 (181)
148 KOG4682 Uncharacterized conser 70.3 4.8 0.0001 47.6 4.2 119 209-341 65-199 (488)
149 KOG3654 Uncharacterized CH dom 69.8 9.8 0.00021 46.0 6.6 15 400-414 430-444 (708)
150 PRK14473 F0F1 ATP synthase sub 68.7 97 0.0021 32.0 12.9 22 336-357 19-40 (164)
151 PRK07352 F0F1 ATP synthase sub 67.9 98 0.0021 32.4 12.9 23 331-353 25-47 (174)
152 KOG2441 mRNA splicing factor/p 67.9 17 0.00037 43.0 7.8 21 325-346 260-280 (506)
153 PRK06231 F0F1 ATP synthase sub 67.8 55 0.0012 35.5 11.3 12 285-296 62-73 (205)
154 KOG2192 PolyC-binding hnRNP-K 66.1 28 0.00062 39.4 8.8 102 925-1038 183-288 (390)
155 PTZ00399 cysteinyl-tRNA-synthe 65.9 10 0.00022 47.6 6.2 15 281-295 451-465 (651)
156 KOG4001 Axonemal dynein light 65.8 30 0.00065 37.9 8.6 71 351-421 166-237 (259)
157 PRK00409 recombination and DNA 65.7 33 0.00072 44.1 10.6 14 362-375 517-530 (782)
158 TIGR01144 ATP_synt_b ATP synth 65.2 1.3E+02 0.0029 30.2 12.9 18 339-356 9-26 (147)
159 PF12037 DUF3523: Domain of un 64.6 86 0.0019 35.9 12.3 16 408-423 176-191 (276)
160 KOG3654 Uncharacterized CH dom 64.5 13 0.00027 45.2 6.1 8 334-341 372-379 (708)
161 PRK07353 F0F1 ATP synthase sub 64.4 87 0.0019 31.3 11.3 17 339-355 19-35 (140)
162 KOG0681 Actin-related protein 64.2 11 0.00024 46.2 5.6 20 346-365 351-370 (645)
163 KOG2689 Predicted ubiquitin re 64.1 36 0.00078 38.8 9.2 7 507-513 218-224 (290)
164 KOG2505 Ankyrin repeat protein 63.9 12 0.00027 45.3 5.9 14 109-122 177-190 (591)
165 KOG1363 Predicted regulator of 63.9 24 0.00053 42.8 8.4 6 293-298 255-260 (460)
166 PRK05759 F0F1 ATP synthase sub 63.6 1.4E+02 0.0031 30.3 12.9 22 336-357 15-36 (156)
167 PF08229 SHR3_chaperone: ER me 63.5 9 0.00019 41.6 4.3 12 181-192 3-14 (196)
168 KOG2341 TATA box binding prote 63.5 21 0.00046 44.0 7.9 33 340-372 408-440 (563)
169 KOG2507 Ubiquitin regulatory p 63.5 6.5 0.00014 46.8 3.5 13 242-254 112-124 (506)
170 PF15346 ARGLU: Arginine and g 62.7 1.4E+02 0.003 31.5 12.4 19 411-429 99-117 (149)
171 PF11208 DUF2992: Protein of u 61.9 24 0.00052 36.2 6.8 47 358-404 83-129 (132)
172 PF08229 SHR3_chaperone: ER me 61.8 6.6 0.00014 42.6 3.0 7 303-309 116-122 (196)
173 PF09831 DUF2058: Uncharacteri 61.8 15 0.00032 39.4 5.5 7 380-386 15-21 (177)
174 PRK06569 F0F1 ATP synthase sub 61.4 1.2E+02 0.0026 32.1 11.8 23 350-372 22-44 (155)
175 KOG3915 Transcription regulato 61.3 51 0.0011 40.0 10.1 15 364-378 535-549 (641)
176 KOG2689 Predicted ubiquitin re 61.3 16 0.00035 41.5 5.9 13 357-369 99-111 (290)
177 CHL00019 atpF ATP synthase CF0 61.2 92 0.002 32.9 11.3 11 286-296 39-49 (184)
178 KOG1772 Vacuolar H+-ATPase V1 60.8 27 0.00058 34.7 6.6 21 388-408 26-46 (108)
179 PRK08476 F0F1 ATP synthase sub 60.8 1.1E+02 0.0023 31.4 11.3 15 339-353 21-35 (141)
180 PF04696 Pinin_SDK_memA: pinin 60.6 1.2E+02 0.0026 30.9 11.4 10 332-341 8-17 (131)
181 PF00769 ERM: Ezrin/radixin/mo 60.4 95 0.002 34.7 11.7 21 326-346 4-24 (246)
182 PRK14471 F0F1 ATP synthase sub 60.0 1.1E+02 0.0023 31.8 11.3 12 285-296 22-33 (164)
183 KOG1962 B-cell receptor-associ 59.9 75 0.0016 35.3 10.5 22 343-365 110-131 (216)
184 PRK13428 F0F1 ATP synthase sub 59.8 68 0.0015 38.7 11.2 19 336-354 12-30 (445)
185 TIGR01069 mutS2 MutS2 family p 59.2 1.1E+02 0.0024 39.5 13.5 14 90-103 184-197 (771)
186 KOG4661 Hsp27-ERE-TATA-binding 58.8 55 0.0012 40.5 9.9 11 424-434 681-691 (940)
187 KOG0949 Predicted helicase, DE 58.6 21 0.00046 46.6 6.9 17 918-934 1279-1295(1330)
188 KOG0783 Uncharacterized conser 58.6 14 0.0003 47.3 5.2 117 211-341 708-844 (1267)
189 PRK00409 recombination and DNA 58.5 44 0.00096 43.1 9.9 14 90-103 189-202 (782)
190 PF15236 CCDC66: Coiled-coil d 58.4 53 0.0011 34.8 8.7 24 367-390 73-97 (157)
191 PF02731 SKIP_SNW: SKIP/SNW do 57.9 29 0.00062 36.7 6.7 21 325-346 87-107 (158)
192 COG4499 Predicted membrane pro 57.8 11 0.00024 44.5 4.1 12 361-372 365-376 (434)
193 TIGR01069 mutS2 MutS2 family p 56.9 96 0.0021 40.1 12.4 12 363-374 513-524 (771)
194 KOG3634 Troponin [Cytoskeleton 56.8 63 0.0014 37.8 9.6 10 553-562 201-210 (361)
195 KOG2963 RNA-binding protein re 56.7 29 0.00063 40.6 7.0 7 114-120 92-98 (405)
196 TIGR00570 cdk7 CDK-activating 55.3 59 0.0013 37.7 9.2 9 375-383 150-158 (309)
197 PF06658 DUF1168: Protein of u 54.8 85 0.0018 32.8 9.4 6 379-384 81-86 (142)
198 PF14943 MRP-S26: Mitochondria 54.6 71 0.0015 34.1 9.1 6 330-335 27-32 (170)
199 KOG0343 RNA Helicase [RNA proc 54.2 22 0.00048 44.0 5.9 16 282-297 494-509 (758)
200 PF12569 NARP1: NMDA receptor- 54.0 10 0.00023 46.3 3.3 19 391-409 413-431 (517)
201 KOG0343 RNA Helicase [RNA proc 53.2 35 0.00077 42.4 7.3 6 462-467 735-740 (758)
202 PF10500 SR-25: Nuclear RNA-sp 53.2 17 0.00036 40.2 4.3 9 445-453 156-164 (225)
203 KOG4715 SWI/SNF-related matrix 53.1 1.2E+02 0.0027 35.3 11.1 41 448-492 343-383 (410)
204 PF01086 Clathrin_lg_ch: Clath 53.0 17 0.00038 39.9 4.5 15 362-376 120-134 (225)
205 COG4942 Membrane-bound metallo 52.9 1E+02 0.0022 37.2 10.9 14 284-297 120-133 (420)
206 PF10186 Atg14: UV radiation r 52.3 3.1E+02 0.0067 30.2 14.0 28 328-355 21-48 (302)
207 KOG4739 Uncharacterized protei 50.2 1.3E+02 0.0028 33.9 10.4 6 549-554 224-229 (233)
208 PLN02316 synthase/transferase 49.6 38 0.00083 44.9 7.4 25 520-547 335-359 (1036)
209 PF15066 CAGE1: Cancer-associa 49.5 1.7E+02 0.0037 35.9 11.8 37 387-423 485-521 (527)
210 KOG4722 Zn-finger protein [Gen 49.4 1.2E+02 0.0026 36.5 10.5 6 169-174 188-193 (672)
211 COG5374 Uncharacterized conser 49.3 74 0.0016 34.5 8.1 68 359-426 116-191 (192)
212 KOG3088 Secretory carrier memb 49.3 20 0.00044 41.0 4.3 23 397-419 70-92 (313)
213 KOG2668 Flotillins [Intracellu 49.1 1.6E+02 0.0036 34.9 11.4 46 377-422 290-336 (428)
214 PF12757 DUF3812: Protein of u 49.1 40 0.00086 34.1 6.0 18 356-373 75-92 (126)
215 PF05279 Asp-B-Hydro_N: Aspart 48.6 40 0.00087 37.8 6.4 10 280-289 57-66 (243)
216 KOG3756 Pinin (desmosome-assoc 48.5 2.2E+02 0.0047 33.4 12.0 41 332-375 140-181 (340)
217 COG5644 Uncharacterized conser 48.3 47 0.001 41.2 7.2 58 329-391 333-401 (869)
218 PTZ00491 major vault protein; 48.2 69 0.0015 41.6 9.0 66 317-392 633-699 (850)
219 KOG0112 Large RNA-binding prot 48.1 17 0.00038 46.7 3.9 19 445-463 784-803 (975)
220 KOG2635 Medium subunit of clat 48.0 45 0.00097 40.3 6.9 33 334-370 104-137 (512)
221 COG0711 AtpF F0F1-type ATP syn 47.9 2.1E+02 0.0046 29.9 11.2 10 284-293 19-28 (161)
222 PRK12704 phosphodiesterase; Pr 47.1 1.7E+02 0.0036 36.3 11.9 20 516-535 195-214 (520)
223 KOG0066 eIF2-interacting prote 47.1 36 0.00079 41.3 6.0 19 550-568 635-653 (807)
224 KOG2007 Cysteinyl-tRNA synthet 46.9 84 0.0018 38.8 9.0 37 338-374 491-527 (586)
225 PRK04863 mukB cell division pr 46.8 94 0.002 43.0 10.5 41 324-364 941-983 (1486)
226 PRK11637 AmiB activator; Provi 46.5 3.3E+02 0.0072 32.5 14.0 9 475-483 314-322 (428)
227 cd03405 Band_7_HflC Band_7_Hfl 46.3 33 0.00073 37.0 5.3 33 376-408 175-207 (242)
228 PF15295 CCDC50_N: Coiled-coil 45.8 2.4E+02 0.0053 29.3 10.8 10 338-347 25-34 (132)
229 PF13904 DUF4207: Domain of un 45.7 1.3E+02 0.0029 33.8 10.0 9 333-341 85-93 (264)
230 KOG4657 Uncharacterized conser 45.4 4E+02 0.0088 30.1 13.1 37 349-385 62-100 (246)
231 COG4942 Membrane-bound metallo 45.4 1.5E+02 0.0032 35.9 10.7 9 475-483 298-306 (420)
232 PF05672 MAP7: MAP7 (E-MAP-115 45.1 53 0.0012 35.2 6.3 19 362-380 33-51 (171)
233 PRK11637 AmiB activator; Provi 44.9 2.5E+02 0.0055 33.4 12.7 11 223-233 16-26 (428)
234 PF03879 Cgr1: Cgr1 family; I 44.5 1.1E+02 0.0024 30.7 8.0 23 351-373 30-52 (108)
235 PF08243 SPT2: SPT2 chromatin 44.1 33 0.00072 34.4 4.5 35 350-384 74-108 (116)
236 KOG4571 Activating transcripti 43.8 1E+02 0.0022 35.5 8.7 52 354-406 242-293 (294)
237 KOG1103 Predicted coiled-coil 43.7 1E+02 0.0023 36.3 8.8 17 522-538 316-332 (561)
238 TIGR03319 YmdA_YtgF conserved 43.4 70 0.0015 39.4 8.0 20 516-535 189-208 (514)
239 KOG0338 ATP-dependent RNA heli 43.3 50 0.0011 40.8 6.5 21 242-265 464-485 (691)
240 COG5192 BMS1 GTP-binding prote 43.1 29 0.00064 43.0 4.6 31 387-417 1030-1060(1077)
241 TIGR01933 hflK HflK protein. H 42.7 1.5E+02 0.0032 32.7 9.6 10 350-359 151-160 (261)
242 PF02029 Caldesmon: Caldesmon; 42.6 93 0.002 38.3 8.7 7 541-547 429-435 (492)
243 KOG2270 Serine/threonine prote 41.4 16 0.00034 43.8 2.0 21 176-196 227-247 (520)
244 KOG4326 Mitochondrial F1F0-ATP 41.2 2E+02 0.0043 27.1 8.4 13 329-341 11-23 (81)
245 KOG2484 GTPase [General functi 41.2 25 0.00055 42.0 3.6 44 365-408 61-108 (435)
246 cd08045 TAF4 TATA Binding Prot 40.8 3.8E+02 0.0082 29.2 12.2 19 278-296 44-62 (212)
247 KOG2894 Uncharacterized conser 40.6 67 0.0015 36.8 6.5 84 351-434 72-186 (331)
248 PF04747 DUF612: Protein of un 40.3 1.8E+02 0.004 34.7 10.1 14 550-563 250-263 (510)
249 PF09731 Mitofilin: Mitochondr 40.1 5.4E+02 0.012 31.9 14.9 28 328-358 259-286 (582)
250 smart00786 SHR3_chaperone ER m 39.9 35 0.00077 37.2 4.2 10 354-363 156-165 (196)
251 KOG1015 Transcription regulato 39.9 23 0.00049 46.2 3.1 55 366-420 549-618 (1567)
252 smart00784 SPT2 SPT2 chromatin 39.8 50 0.0011 33.2 4.9 30 350-379 69-98 (111)
253 PHA03247 large tegument protei 39.1 1.2E+03 0.025 35.1 18.3 10 836-845 2948-2957(3151)
254 COG2811 NtpF Archaeal/vacuolar 39.0 2.2E+02 0.0047 28.7 9.0 12 361-372 28-39 (108)
255 PLN02316 synthase/transferase 38.3 63 0.0014 43.0 6.8 11 176-186 136-146 (1036)
256 KOG4715 SWI/SNF-related matrix 38.2 78 0.0017 36.8 6.6 14 345-358 264-277 (410)
257 PF10669 Phage_Gp23: Protein g 37.6 1.7E+02 0.0037 29.0 7.9 13 440-452 104-116 (121)
258 PF15346 ARGLU: Arginine and g 37.4 5.3E+02 0.011 27.4 12.3 15 320-334 31-45 (149)
259 TIGR01147 V_ATP_synt_G vacuola 37.4 1.1E+02 0.0023 30.9 6.8 29 389-417 27-55 (113)
260 KOG0288 WD40 repeat protein Ti 37.1 1.6E+02 0.0036 35.5 9.2 14 433-446 118-131 (459)
261 PF09726 Macoilin: Transmembra 36.9 3.4E+02 0.0073 35.0 12.6 7 399-405 512-518 (697)
262 PF05529 Bap31: B-cell recepto 36.7 3.1E+02 0.0066 29.2 10.5 9 333-341 108-116 (192)
263 PRK12585 putative monovalent c 36.4 1.1E+02 0.0023 33.6 7.0 11 325-335 108-118 (197)
264 PF12999 PRKCSH-like: Glucosid 36.0 1.4E+02 0.003 32.3 7.7 26 326-358 116-141 (176)
265 COG5493 Uncharacterized conser 35.3 4.4E+02 0.0096 29.3 11.3 21 348-369 24-45 (231)
266 KOG3878 Protein involved in ma 35.1 3.9E+02 0.0085 31.7 11.5 29 348-376 115-143 (469)
267 PF12569 NARP1: NMDA receptor- 35.1 32 0.0007 42.3 3.4 9 445-453 467-475 (517)
268 PHA02571 a-gt.4 hypothetical p 34.9 1E+02 0.0022 30.9 6.0 35 364-398 17-53 (109)
269 PF12037 DUF3523: Domain of un 34.8 5.3E+02 0.012 29.8 12.5 16 325-340 61-76 (276)
270 KOG2962 Prohibitin-related mem 34.5 4.4E+02 0.0096 29.9 11.4 9 326-334 182-190 (322)
271 KOG2457 A/G-specific adenine D 34.5 37 0.00079 40.4 3.5 21 913-933 443-463 (555)
272 KOG4598 Putative ubiquitin-spe 34.4 68 0.0015 40.8 5.8 86 229-374 91-177 (1203)
273 KOG4591 Uncharacterized conser 34.1 22 0.00048 39.0 1.6 90 210-310 63-165 (280)
274 KOG4055 Uncharacterized conser 34.0 2.8E+02 0.0061 30.3 9.5 8 288-295 36-43 (213)
275 PRK01005 V-type ATP synthase s 33.6 2E+02 0.0043 31.6 8.7 11 343-353 15-25 (207)
276 KOG4369 RTK signaling protein 33.3 28 0.0006 46.1 2.4 27 920-947 1931-1957(2131)
277 cd03404 Band_7_HflK Band_7_Hfl 33.3 1.7E+02 0.0036 32.3 8.2 13 179-191 82-94 (266)
278 PLN03188 kinesin-12 family pro 33.0 3.1E+02 0.0067 37.5 11.5 33 325-359 1090-1124(1320)
279 PRK12704 phosphodiesterase; Pr 33.0 2.6E+02 0.0057 34.7 10.6 8 531-538 216-223 (520)
280 PF05236 TAF4: Transcription i 32.9 35 0.00075 38.1 2.9 16 277-292 42-57 (264)
281 KOG0994 Extracellular matrix g 32.8 3.8E+02 0.0082 36.5 11.9 14 403-416 1686-1699(1758)
282 PF05890 Ebp2: Eukaryotic rRNA 32.7 2.2E+02 0.0049 32.5 9.2 29 355-383 116-144 (271)
283 COG5269 ZUO1 Ribosome-associat 32.6 2.9E+02 0.0062 32.0 9.7 8 334-341 219-226 (379)
284 KOG2505 Ankyrin repeat protein 32.2 82 0.0018 38.7 5.9 15 281-296 443-457 (591)
285 KOG4055 Uncharacterized conser 31.9 1.2E+02 0.0025 33.1 6.3 10 289-298 56-65 (213)
286 PF12072 DUF3552: Domain of un 31.9 6.9E+02 0.015 27.0 12.6 19 339-357 18-36 (201)
287 PLN02850 aspartate-tRNA ligase 31.9 40 0.00086 41.6 3.4 19 836-854 302-321 (530)
288 PF15086 UPF0542: Uncharacteri 31.7 68 0.0015 30.1 4.0 14 364-377 42-55 (74)
289 PF14235 DUF4337: Domain of un 31.6 2.1E+02 0.0046 30.1 8.2 27 389-415 80-106 (157)
290 PLN02381 valyl-tRNA synthetase 31.6 53 0.0011 43.8 4.7 60 376-437 16-75 (1066)
291 PF03879 Cgr1: Cgr1 family; I 31.4 5.6E+02 0.012 25.8 10.9 6 365-370 52-57 (108)
292 TIGR02473 flagell_FliJ flagell 31.4 5.2E+02 0.011 25.5 11.4 15 348-362 67-81 (141)
293 PF03154 Atrophin-1: Atrophin- 30.7 29 0.00064 45.1 2.1 8 7-14 124-131 (982)
294 PTZ00401 aspartyl-tRNA synthet 30.5 40 0.00088 41.8 3.2 19 836-854 290-309 (550)
295 KOG4739 Uncharacterized protei 30.3 5E+02 0.011 29.3 11.1 10 402-411 129-138 (233)
296 KOG2223 Uncharacterized conser 30.2 1.1E+02 0.0024 37.2 6.4 7 465-471 356-362 (586)
297 cd07658 F-BAR_NOSTRIN The F-BA 29.4 8E+02 0.017 27.2 12.7 17 354-370 77-93 (239)
298 PF07543 PGA2: Protein traffic 29.4 1.5E+02 0.0033 30.7 6.6 24 343-370 26-49 (140)
299 KOG1850 Myosin-like coiled-coi 29.3 9.3E+02 0.02 28.7 13.1 46 325-376 33-78 (391)
300 KOG2573 Ribosome biogenesis pr 29.2 73 0.0016 38.2 4.7 6 167-172 198-203 (498)
301 KOG1962 B-cell receptor-associ 29.1 2.7E+02 0.0059 31.0 8.8 9 362-370 115-123 (216)
302 PF13423 UCH_1: Ubiquitin carb 28.7 18 0.00039 40.3 -0.1 27 230-256 5-31 (295)
303 PRK07720 fliJ flagellar biosyn 28.6 6.3E+02 0.014 25.6 12.0 17 348-364 70-86 (146)
304 KOG3223 Uncharacterized conser 28.6 1.1E+02 0.0024 33.5 5.5 10 459-468 143-152 (221)
305 KOG4673 Transcription factor T 28.5 2.8E+02 0.0062 35.6 9.6 37 348-384 416-452 (961)
306 PF11875 DUF3395: Domain of un 28.5 1.1E+02 0.0023 32.0 5.4 12 403-414 24-35 (151)
307 PF05384 DegS: Sensor protein 28.4 5.3E+02 0.011 27.5 10.4 34 339-372 64-101 (159)
308 COG3334 Uncharacterized conser 28.4 2.2E+02 0.0048 31.2 7.8 25 336-360 5-29 (192)
309 KOG1265 Phospholipase C [Lipid 28.2 4E+02 0.0086 35.4 10.9 27 166-192 680-710 (1189)
310 PF04568 IATP: Mitochondrial A 28.0 1.9E+02 0.0042 28.6 6.7 26 343-369 51-76 (100)
311 KOG1156 N-terminal acetyltrans 27.8 63 0.0014 40.8 4.1 31 389-419 585-615 (700)
312 PRK14148 heat shock protein Gr 27.7 2.3E+02 0.0051 30.9 7.9 30 391-420 60-89 (195)
313 PHA01750 hypothetical protein 27.4 2.6E+02 0.0055 26.1 6.8 28 338-366 17-44 (75)
314 KOG1265 Phospholipase C [Lipid 27.3 3.9E+02 0.0084 35.4 10.6 12 129-140 700-711 (1189)
315 PLN03237 DNA topoisomerase 2; 26.6 1.7E+02 0.0037 40.5 8.0 17 282-298 1060-1076(1465)
316 KOG0267 Microtubule severing p 26.6 2.4E+02 0.0053 36.3 8.7 59 731-789 498-565 (825)
317 PTZ00074 60S ribosomal protein 26.5 1.6E+02 0.0036 30.5 6.2 9 346-354 85-93 (135)
318 KOG4657 Uncharacterized conser 26.4 8.6E+02 0.019 27.6 11.9 12 500-511 207-218 (246)
319 PF09731 Mitofilin: Mitochondr 26.4 2.9E+02 0.0063 34.2 9.5 14 440-453 379-392 (582)
320 TIGR03319 YmdA_YtgF conserved 26.3 4.5E+02 0.0098 32.6 11.0 9 530-538 209-217 (514)
321 PF03179 V-ATPase_G: Vacuolar 26.2 1.9E+02 0.004 27.9 6.3 53 375-427 9-63 (105)
322 KOG2062 26S proteasome regulat 26.1 23 0.0005 45.0 0.1 16 387-402 793-808 (929)
323 PRK12705 hypothetical protein; 25.9 1.9E+02 0.004 36.0 7.6 57 516-581 183-240 (508)
324 PRK00106 hypothetical protein; 25.8 5.4E+02 0.012 32.3 11.5 24 557-580 242-266 (535)
325 KOG0551 Hsp90 co-chaperone CNS 25.6 5.2E+02 0.011 31.0 10.5 12 454-465 263-274 (390)
326 PRK10930 FtsH protease regulat 25.6 3.4E+02 0.0074 32.9 9.6 14 387-400 279-292 (419)
327 PF04615 Utp14: Utp14 protein; 25.5 1.8E+02 0.004 37.2 7.8 18 497-514 373-390 (735)
328 PF03538 VRP1: Salmonella viru 25.4 26 0.00056 40.8 0.3 48 918-967 171-223 (325)
329 KOG4709 Uncharacterized conser 24.9 2.6E+02 0.0056 30.9 7.5 14 459-472 121-134 (217)
330 KOG4133 tRNA splicing endonucl 24.7 4.4E+02 0.0096 30.3 9.4 22 273-294 7-29 (290)
331 PF10168 Nup88: Nuclear pore c 24.6 6.3E+02 0.014 32.8 12.1 11 223-233 379-389 (717)
332 cd08045 TAF4 TATA Binding Prot 24.6 2.7E+02 0.0059 30.3 7.9 8 363-370 115-122 (212)
333 PRK05035 electron transport co 24.2 2.2E+02 0.0048 36.6 8.1 116 326-445 418-555 (695)
334 KOG2341 TATA box binding prote 24.1 1.6E+02 0.0035 36.8 6.6 26 365-390 430-455 (563)
335 PF09726 Macoilin: Transmembra 24.0 5E+02 0.011 33.6 11.0 8 378-385 513-520 (697)
336 KOG3088 Secretory carrier memb 23.9 1E+02 0.0022 35.6 4.6 18 362-379 65-82 (313)
337 PF04889 Cwf_Cwc_15: Cwf15/Cwc 23.8 1.5E+02 0.0034 33.3 5.9 7 365-371 150-156 (244)
338 PF11208 DUF2992: Protein of u 23.8 2E+02 0.0043 29.7 6.2 6 395-400 106-111 (132)
339 KOG4722 Zn-finger protein [Gen 23.7 7.4E+02 0.016 30.3 11.4 6 434-439 456-461 (672)
340 KOG2391 Vacuolar sorting prote 23.3 5.4E+02 0.012 30.7 10.1 38 349-386 210-250 (365)
341 PF07763 FEZ: FEZ-like protein 23.2 3.2E+02 0.007 31.0 8.1 45 329-374 163-208 (244)
342 PF11241 DUF3043: Protein of u 23.2 57 0.0012 34.9 2.3 14 389-402 23-36 (170)
343 KOG1945 Protein phosphatase 1 23.0 2E+02 0.0044 34.1 6.8 19 387-405 331-349 (377)
344 KOG3080 Nucleolar protein-like 23.0 5.2E+02 0.011 30.3 9.7 30 356-385 179-208 (328)
345 KOG2153 Protein involved in th 22.9 1.6E+02 0.0034 37.5 6.2 22 343-364 369-390 (704)
346 KOG1150 Predicted molecular ch 22.8 6.8E+02 0.015 28.1 10.1 11 348-358 114-124 (250)
347 KOG0996 Structural maintenance 22.5 7.8E+02 0.017 33.7 12.3 32 72-107 89-120 (1293)
348 KOG0681 Actin-related protein 22.5 2.8E+02 0.0062 34.8 8.0 52 233-295 205-258 (645)
349 COG5533 UBP5 Ubiquitin C-termi 22.4 30 0.00065 40.2 0.1 37 229-265 75-113 (415)
350 COG2811 NtpF Archaeal/vacuolar 22.2 7.2E+02 0.016 25.2 9.4 6 365-370 21-26 (108)
351 PF08701 GN3L_Grn1: GNL3L/Grn1 22.2 1.9E+02 0.0042 27.4 5.3 13 364-376 45-57 (79)
352 PF01093 Clusterin: Clusterin; 22.2 3.8E+02 0.0083 32.8 9.1 50 360-411 24-73 (436)
353 cd02674 Peptidase_C19R A subfa 22.2 52 0.0011 34.6 1.8 18 229-246 3-20 (230)
354 PF13300 DUF4078: Domain of un 22.1 3E+02 0.0064 26.7 6.6 11 360-370 45-55 (88)
355 cd07676 F-BAR_FBP17 The F-BAR 22.0 9.7E+02 0.021 27.0 11.7 9 398-406 141-149 (253)
356 KOG1924 RhoA GTPase effector D 21.7 1.4E+02 0.003 38.7 5.4 23 280-302 863-885 (1102)
357 KOG0717 Molecular chaperone (D 21.5 4.5E+02 0.0098 32.5 9.3 15 358-372 197-211 (508)
358 PF15437 PGBA_C: Plasminogen-b 21.5 1.5E+02 0.0032 28.5 4.3 55 370-424 22-78 (86)
359 KOG2572 Ribosome biogenesis pr 21.4 38 0.00083 40.4 0.7 11 162-173 185-195 (498)
360 KOG0388 SNF2 family DNA-depend 21.4 2.1E+02 0.0045 37.1 6.8 17 349-365 370-386 (1185)
361 PF11675 DUF3271: Protein of u 21.1 33 0.00073 38.3 0.2 48 921-968 49-104 (249)
362 COG1422 Predicted membrane pro 20.9 87 0.0019 34.4 3.2 38 389-426 72-109 (201)
363 KOG2751 Beclin-like protein [S 20.7 5.3E+02 0.011 31.6 9.6 20 464-483 283-302 (447)
364 KOG0566 Inositol-1,4,5-triphos 20.7 6.7E+02 0.015 33.6 11.0 29 761-789 1015-1043(1080)
365 PF13892 DBINO: DNA-binding do 20.6 5.5E+02 0.012 27.0 8.6 12 355-366 37-48 (139)
366 KOG2321 WD40 repeat protein [G 20.4 2.9E+02 0.0063 34.9 7.6 20 342-361 387-406 (703)
367 PRK05689 fliJ flagellar biosyn 20.4 8.9E+02 0.019 24.4 10.6 69 344-412 70-138 (147)
368 TIGR01554 major_cap_HK97 phage 20.4 3.3E+02 0.0071 31.9 8.0 10 570-579 165-174 (378)
369 KOG0245 Kinesin-like protein [ 20.3 2.7E+02 0.0058 37.3 7.6 27 358-384 354-381 (1221)
370 KOG0949 Predicted helicase, DE 20.3 3.1E+02 0.0068 36.8 8.1 18 355-372 863-880 (1330)
371 PHA00448 hypothetical protein 20.2 2.4E+02 0.0052 26.3 5.2 36 389-424 29-64 (70)
372 PF05278 PEARLI-4: Arabidopsis 20.0 4.5E+02 0.0098 30.3 8.5 63 357-423 167-229 (269)
No 1
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=244.11 Aligned_cols=180 Identities=27% Similarity=0.507 Sum_probs=151.5
Q ss_pred cccCcEEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCC--CC-CCCeEEEEEEEEEEe
Q 001419 64 SELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDK--LL-PGWSHFAQFTIAVVN 140 (1080)
Q Consensus 64 s~~~gkFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~es--l~-~~WSI~AqFtL~LLN 140 (1080)
......|+|+|++|+.+.+ .+.||.|.+||+.|+|.++|+|+...+ +++||+....+. .. ..|.|+|+|.|.|-+
T Consensus 35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQCN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCccc-cEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 3456789999999999976 588999999999999999999987655 999999864321 11 359999999999998
Q ss_pred CC-CCCccccccceeccCCCCCcccccccccccccc------ccccCCeEEEEEEEEEEe--ccccccccchhhhhcccc
Q 001419 141 RD-PKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD------GFKDGDTLIIKAQVQVIS--FCAFWLGIDQNARRRMSR 211 (1080)
Q Consensus 141 Qd-GkkS~sket~h~Fs~ke~dWGwskFIswddLes------GFLVDDsLtIEc~VkVis--~tgiw~~fD~~~rl~DSk 211 (1080)
+. +......+..|+|.....+|||.+|+.+.+|.. .|+.+|++.|.+.|.|++ ++.+|+.| ..+++|
T Consensus 113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF----~nYnSK 188 (1089)
T COG5077 113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSF----LNYNSK 188 (1089)
T ss_pred CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecc----cccccc
Confidence 73 322223467799998889999999999999873 689999999999999996 57899754 569999
Q ss_pred CccC-eEEEEeceeeeehhhhhHHHhHHHHhhhhhccccccccccccce
Q 001419 212 EKTD-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAK 259 (1080)
Q Consensus 212 E~SD-V~LkV~vkKFyVsKnvLAT~YMnSLLqgLy~Le~Fres~Ks~i~ 259 (1080)
+.|| ||| ||+|||||||||||.||+|..||+..+..++
T Consensus 189 keTGYVGl----------rNqGATCYmNSLlQslffi~~FRk~Vy~ipT 227 (1089)
T COG5077 189 KETGYVGL----------RNQGATCYMNSLLQSLFFIAKFRKDVYGIPT 227 (1089)
T ss_pred cceeeeee----------ccCCceeeHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999 999 9999999999999999999999988776554
No 2
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=1.1e-22 Score=198.76 Aligned_cols=125 Identities=26% Similarity=0.497 Sum_probs=105.5
Q ss_pred CcEEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCC----CCeEEEEEEEeccCCCCCCCeEEEEEEEEEEeCC
Q 001419 67 YGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV----CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRD 142 (1080)
Q Consensus 67 ~gkFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~----~dyLSLYLec~~~esl~~~WSI~AqFtL~LLNQd 142 (1080)
+++|+|+|+|||.+ ++.++|+.|.||||+|+|++||+|+.. .+||||||+|.... ....|++.|+|+|+|+|++
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 58999999999998 567999999999999999999999542 48999999997543 3348999999999999997
Q ss_pred CC-CccccccceeccCCCCCccccccccccccc---cccccCCeEEEEEEEEEEe
Q 001419 143 PK-KSKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIS 193 (1080)
Q Consensus 143 Gk-kS~sket~h~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEc~VkVis 193 (1080)
+. ........|.|.....+|||.+||+|++|+ ++||+||+|+|+|+|+|..
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 42 333334557887667899999999999995 6999999999999998864
No 3
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.87 E-value=9e-22 Score=192.11 Aligned_cols=121 Identities=32% Similarity=0.702 Sum_probs=103.0
Q ss_pred EEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCC----CCCCCeEEEEEEEEEEeCC-C
Q 001419 69 KYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDK----LLPGWSHFAQFTIAVVNRD-P 143 (1080)
Q Consensus 69 kFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~es----l~~~WSI~AqFtL~LLNQd-G 143 (1080)
+|+|+|+|||.+ ++.++|+.|.+|||.|+|++||+|+...+||||||++..... .+.+|.+.|+|+|.|+|+. +
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~ 80 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDP 80 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCC
Confidence 699999999996 467999999999999999999999766789999999876443 2458999999999999995 3
Q ss_pred CCccccccceeccCCCCCccccccccccccc-------cccccCCeEEEEEEEE
Q 001419 144 KKSKYSDTLHRFWKKEHDWGWKKFMELSKVS-------DGFKDGDTLIIKAQVQ 190 (1080)
Q Consensus 144 kkS~sket~h~Fs~ke~dWGwskFIswddLe-------sGFLVDDsLtIEc~Vk 190 (1080)
..+......|.|.....+|||.+||++++|+ +|||+||+|+|+|.|.
T Consensus 81 ~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 81 SIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred ccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 3333345678998767899999999999997 4899999999999873
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.82 E-value=6.6e-20 Score=176.94 Aligned_cols=120 Identities=27% Similarity=0.517 Sum_probs=100.5
Q ss_pred cCcEEEEEEcCccccc--CCeeeCCcEEeCCeEEEEEEEeCCCCC--CCeEEEEEEEeccCCCCCCCeEEEEEEEEEEeC
Q 001419 66 LYGKYTWRIEKFSQIS--KRELRSNAFEVGGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNR 141 (1080)
Q Consensus 66 ~~gkFtWkIeNFSkLk--ke~I~Sp~FevGG~~WRIlVYPrGn~~--~dyLSLYLec~~~esl~~~WSI~AqFtL~LLNQ 141 (1080)
.+.+++|+|.|||.++ ++.++|+.|.+|||.|+|.+||+|+.. .+||||||++... ..|.+.++|+|+|+|+
T Consensus 3 ~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~llnq 78 (132)
T cd03773 3 PYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVHQ 78 (132)
T ss_pred CCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEcC
Confidence 4678999999999985 357999999999999999999999753 6899999998653 2477889999999999
Q ss_pred -CCCCccccccceeccCCCCCccccccccccccc-cccccC--CeEEEEEEEE
Q 001419 142 -DPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVS-DGFKDG--DTLIIKAQVQ 190 (1080)
Q Consensus 142 -dGkkS~sket~h~Fs~ke~dWGwskFIswddLe-sGFLVD--DsLtIEc~Vk 190 (1080)
++..+......+.|.. ..+|||.+||++++|+ +|||+| |+|+|+|.|+
T Consensus 79 ~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 79 ANPTKNIKREFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCccceEEeccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 4444444455677865 4689999999999997 699999 9999999996
No 5
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.82 E-value=1.9e-19 Score=166.42 Aligned_cols=123 Identities=38% Similarity=0.694 Sum_probs=102.2
Q ss_pred cEEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCC-CCeEEEEEEEeccCCCCCCCeEEEEEEEEEEeCCCCCc
Q 001419 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV-CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKS 146 (1080)
Q Consensus 68 gkFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~-~dyLSLYLec~~~esl~~~WSI~AqFtL~LLNQdGkkS 146 (1080)
++|+|+|.+|+...++.++|+.|.++|+.|+|.+||+|... .+||||||+|.........|.+.+.|+|.|+|+++.+.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 47999999999855678999999999999999999999642 46999999998755433579999999999999985444
Q ss_pred cccccceecc-CCCCCcccccccccccccccc-ccCCeEEEEEEEE
Q 001419 147 KYSDTLHRFW-KKEHDWGWKKFMELSKVSDGF-KDGDTLIIKAQVQ 190 (1080)
Q Consensus 147 ~sket~h~Fs-~ke~dWGwskFIswddLesGF-LVDDsLtIEc~Vk 190 (1080)
..+...+.|. ....+|||.+||+|++|++.+ ++||+|+|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred ceEeccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 4444455553 446899999999999999765 9999999999984
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.81 E-value=2.8e-19 Score=175.05 Aligned_cols=122 Identities=29% Similarity=0.510 Sum_probs=101.0
Q ss_pred CcEEEEEEcCccccc---CCeeeCCcEEeCCe---EEEEEEEeCCCC--CCCeEEEEEEEeccCCCCCCCeEEEEEEEEE
Q 001419 67 YGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCD--VCNHLSLFLCVANHDKLLPGWSHFAQFTIAV 138 (1080)
Q Consensus 67 ~gkFtWkIeNFSkLk---ke~I~Sp~FevGG~---~WRIlVYPrGn~--~~dyLSLYLec~~~esl~~~WSI~AqFtL~L 138 (1080)
..+|+|+|+|||.++ ++.+.|+.|.+||| +|+|++||+|+. ..+||||||++.... .|.+.|+|+|.|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence 368999999999874 46799999999994 999999999964 368999999986532 468999999999
Q ss_pred EeCCCCCcc--ccccceeccCCCCCccccccccccccc---cccccCCeEEEEEEEEEEe
Q 001419 139 VNRDPKKSK--YSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIS 193 (1080)
Q Consensus 139 LNQdGkkS~--sket~h~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEc~VkVis 193 (1080)
+|+++.+.. .....+.|.. ..+|||.+||++++|+ ++||+||+|+|+|+|+|++
T Consensus 80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999875422 1123577764 5789999999999995 4899999999999999974
No 7
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.80 E-value=1.5e-19 Score=178.18 Aligned_cols=123 Identities=28% Similarity=0.509 Sum_probs=99.0
Q ss_pred cEEEEEEcCcccccC-------CeeeCCcEEeC--CeEEEEEEEeCCCC--CCCeEEEEEEEeccCCC-CCCCeEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-------e~I~Sp~FevG--G~~WRIlVYPrGn~--~~dyLSLYLec~~~esl-~~~WSI~AqFt 135 (1080)
++|+|+|.|||.+++ +.++|+.|++| ||.|+|.+||+|+. ..+||||||++.+...+ ...|.+.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 589999999999742 47999999999 99999999999974 35799999999775432 24799999999
Q ss_pred EEEEeCCCC---Cccccc-----cceecc-----CCCCCcccccccccccccc-ccccCCeEEEEEEEE
Q 001419 136 IAVVNRDPK---KSKYSD-----TLHRFW-----KKEHDWGWKKFMELSKVSD-GFKDGDTLIIKAQVQ 190 (1080)
Q Consensus 136 L~LLNQdGk---kS~ske-----t~h~Fs-----~ke~dWGwskFIswddLes-GFLVDDsLtIEc~Vk 190 (1080)
|.|+|+.+. ++.... ..+.|. ....+|||.+||++++|++ +||+||+|+|+|.|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999763 221111 234554 1357899999999999995 899999999999983
No 8
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.78 E-value=5.4e-19 Score=175.13 Aligned_cols=123 Identities=24% Similarity=0.469 Sum_probs=97.6
Q ss_pred cEEEEEEcCcccccC-----C--eeeCCcEEe--CCeEEEEEEEeCCCCC--CCeEEEEEEEeccCC-CCCCCeEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-----R--ELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDK-LLPGWSHFAQFT 135 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-----e--~I~Sp~Fev--GG~~WRIlVYPrGn~~--~dyLSLYLec~~~es-l~~~WSI~AqFt 135 (1080)
|+|+|+|.|||.+++ + .++|+.|.+ |||.|+|.+||+|... .+||||||++..... ....|.+.++|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 589999999997642 2 388999995 7999999999999753 589999999976543 124799999999
Q ss_pred EEEEeCCCCCc-cc-----cccceeccC-----CCCCccccccccccccc-cccccCCeEEEEEEEE
Q 001419 136 IAVVNRDPKKS-KY-----SDTLHRFWK-----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQ 190 (1080)
Q Consensus 136 L~LLNQdGkkS-~s-----ket~h~Fs~-----ke~dWGwskFIswddLe-sGFLVDDsLtIEc~Vk 190 (1080)
|.|+||++... .. ....+.|.. .+.+|||.+||++++|+ .+||+||+|+|+|.|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999986422 11 112345653 24689999999999999 4899999999999984
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.75 E-value=7.1e-18 Score=169.22 Aligned_cols=122 Identities=22% Similarity=0.413 Sum_probs=97.9
Q ss_pred cEEEEEEcCcccccC-------CeeeCCcEEeC--CeEEEEEEEeCCCCC--CCeEEEEEEEeccCCCC-CCCeEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFAQFT 135 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-------e~I~Sp~FevG--G~~WRIlVYPrGn~~--~dyLSLYLec~~~esl~-~~WSI~AqFt 135 (1080)
|+|.|+|.|||.+++ +.++|+.|.+| ||.|+|.+||+|... .+||||||+++..+.+. ..|.+.++|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 689999999998752 46999999999 999999999999753 67999999998754332 3899999999
Q ss_pred EEEEeCCCC--C---cccc-----ccceeccC--------CCCCccccccccccccc-cccccCCeEEEEEEE
Q 001419 136 IAVVNRDPK--K---SKYS-----DTLHRFWK--------KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQV 189 (1080)
Q Consensus 136 L~LLNQdGk--k---S~sk-----et~h~Fs~--------ke~dWGwskFIswddLe-sGFLVDDsLtIEc~V 189 (1080)
|.|+||.+. . .... .....|.. .+.+|||.+||++++|+ .+||.||+|+|+|.|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 999999764 1 1100 11344542 34579999999999999 589999999999988
No 10
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.75 E-value=6.3e-18 Score=169.64 Aligned_cols=122 Identities=24% Similarity=0.414 Sum_probs=99.5
Q ss_pred cEEEEEEcCcccccC-----C--eeeCCcE--EeCCeEEEEEEEeCCCCC--CCeEEEEEEEeccCCC-CCCCeEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-----R--ELRSNAF--EVGGYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-----e--~I~Sp~F--evGG~~WRIlVYPrGn~~--~dyLSLYLec~~~esl-~~~WSI~AqFt 135 (1080)
|+|.|+|.||+.+++ . .++|+.| .++||+|+|.+||+|... ++||||||+++..+.+ ...|.+.++|+
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 689999999999862 3 6999999 899999999999999753 6799999999875332 23799999999
Q ss_pred EEEEeCCCCCcc---ccc---cceeccCC----CCCcccccccccccccc---ccccCCeEEEEEEE
Q 001419 136 IAVVNRDPKKSK---YSD---TLHRFWKK----EHDWGWKKFMELSKVSD---GFKDGDTLIIKAQV 189 (1080)
Q Consensus 136 L~LLNQdGkkS~---ske---t~h~Fs~k----e~dWGwskFIswddLes---GFLVDDsLtIEc~V 189 (1080)
|.|++|++.+.. ... ..+.|... +..||+.+||++++|+. +||.||+|+|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999865321 111 24668643 45799999999999984 89999999999987
No 11
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.74 E-value=2.8e-18 Score=159.66 Aligned_cols=114 Identities=30% Similarity=0.596 Sum_probs=94.2
Q ss_pred EcCcccccCC-e-eeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCCCC-CCCeEEEEEEEEEEeCCCCCccccc
Q 001419 74 IEKFSQISKR-E-LRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLL-PGWSHFAQFTIAVVNRDPKKSKYSD 150 (1080)
Q Consensus 74 IeNFSkLkke-~-I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~esl~-~~WSI~AqFtL~LLNQdGkkS~ske 150 (1080)
|+|||.+++. . +.|+.|.+||++|+|.+||+|+ .+||++||+|....... ..|+|.++|+|+|+++++.. ....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~--~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~ 77 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN--GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS-ISKR 77 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES--TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE-EEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC--cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc-ceee
Confidence 7899999843 3 4458999999999999999995 46999999998865442 48999999999999998764 2222
Q ss_pred c-ceeccCCCCCccccccccccccccc-cccCCeEEEEEEEEE
Q 001419 151 T-LHRFWKKEHDWGWKKFMELSKVSDG-FKDGDTLIIKAQVQV 191 (1080)
Q Consensus 151 t-~h~Fs~ke~dWGwskFIswddLesG-FLVDDsLtIEc~VkV 191 (1080)
. .+.|.. ..+|||.+||+|++|.+. ||+||+|+|+|+|+|
T Consensus 78 ~~~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 78 IKSHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EECEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred eeeeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 2 588876 488999999999999975 799999999999987
No 12
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.74 E-value=8.7e-18 Score=168.65 Aligned_cols=122 Identities=25% Similarity=0.420 Sum_probs=98.3
Q ss_pred cEEEEEEcCcccccC-------CeeeCCcEEeC--CeEEEEEEEeCCCC--CCCeEEEEEEEeccCCC-CCCCeEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQFT 135 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-------e~I~Sp~FevG--G~~WRIlVYPrGn~--~~dyLSLYLec~~~esl-~~~WSI~AqFt 135 (1080)
|+|.|+|.||+++.. ..++||.|+.. ||.|+|.+||+|+. .++||||||+++..+.+ ...|.+.++|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 689999999997531 25999999975 99999999999975 36799999999864321 23799999999
Q ss_pred EEEEeCCCCCccc--ccc---ceecc----CCCCCcccccccccccccc---ccccCCeEEEEEEE
Q 001419 136 IAVVNRDPKKSKY--SDT---LHRFW----KKEHDWGWKKFMELSKVSD---GFKDGDTLIIKAQV 189 (1080)
Q Consensus 136 L~LLNQdGkkS~s--ket---~h~Fs----~ke~dWGwskFIswddLes---GFLVDDsLtIEc~V 189 (1080)
|.|++|++++... ... .+.|. ..+..||+.+||++++|+. +||.||+|+|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 9999998754321 111 36686 3345899999999999985 89999999999998
No 13
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.73 E-value=2.2e-17 Score=171.44 Aligned_cols=127 Identities=22% Similarity=0.391 Sum_probs=101.2
Q ss_pred ccCcEEEEEEcCcccccC-----C--eeeCCcEEeC--CeEEEEEEEeCCCC--CCCeEEEEEEEeccCCC-CCCCeEEE
Q 001419 65 ELYGKYTWRIEKFSQISK-----R--ELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFA 132 (1080)
Q Consensus 65 ~~~gkFtWkIeNFSkLkk-----e--~I~Sp~FevG--G~~WRIlVYPrGn~--~~dyLSLYLec~~~esl-~~~WSI~A 132 (1080)
...|+|.|+|.||+.+++ + .++|++|++| ||+|+|.+||+|+. .++||||||+++..+.+ ...|.+.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 446999999999998752 3 6999999999 99999999999975 36799999999875422 23799999
Q ss_pred EEEEEEEeCCCCC-cccc-----ccceecc-CC---CCCccccccccccccc-cccccCCeEEEEEEEEE
Q 001419 133 QFTIAVVNRDPKK-SKYS-----DTLHRFW-KK---EHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQV 191 (1080)
Q Consensus 133 qFtL~LLNQdGkk-S~sk-----et~h~Fs-~k---e~dWGwskFIswddLe-sGFLVDDsLtIEc~VkV 191 (1080)
+|+|.|++|++.. .... ...+.|. .. +.+|||.+||++++|+ .+||.||+|+|+|.|..
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 9999999997621 1110 1235575 22 4579999999999998 47999999999999863
No 14
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.68 E-value=1.4e-16 Score=162.49 Aligned_cols=125 Identities=26% Similarity=0.416 Sum_probs=100.7
Q ss_pred ccCcEEEEEEcCcccccC-------CeeeCCcEEe--CCeEEEEEEEeCCCCC--CCeEEEEEEEeccCCCC-CCCeEEE
Q 001419 65 ELYGKYTWRIEKFSQISK-------RELRSNAFEV--GGYKWYILIYPQGCDV--CNHLSLFLCVANHDKLL-PGWSHFA 132 (1080)
Q Consensus 65 ~~~gkFtWkIeNFSkLkk-------e~I~Sp~Fev--GG~~WRIlVYPrGn~~--~dyLSLYLec~~~esl~-~~WSI~A 132 (1080)
...|+|+|+|.||+.+.. ..++||.|+. +||+|+|.+||+|++. +.||||||++++++.+. ..|.+..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 447999999999998752 2599999986 5899999999999753 67999999999987664 6899999
Q ss_pred EEEEEEEeCCCCCccccc-----cceecc----CCCCCccccccccccccc--cccccCCeEEEEEEE
Q 001419 133 QFTIAVVNRDPKKSKYSD-----TLHRFW----KKEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQV 189 (1080)
Q Consensus 133 qFtL~LLNQdGkkS~ske-----t~h~Fs----~ke~dWGwskFIswddLe--sGFLVDDsLtIEc~V 189 (1080)
+++|+|+||+....+... ....|. ..+.+|||..||++++|+ .+||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 999999999754332211 111342 235689999999999997 489999999999987
No 15
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.67 E-value=4.7e-16 Score=159.21 Aligned_cols=122 Identities=25% Similarity=0.515 Sum_probs=94.3
Q ss_pred cEEEEEEcCcccccC-----CeeeCCcE-EeCCeEEEEEEEeCCCC-CCCeEEEEEEEeccCCC-CCCCe-EEEEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-----RELRSNAF-EVGGYKWYILIYPQGCD-VCNHLSLFLCVANHDKL-LPGWS-HFAQFTIAV 138 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-----e~I~Sp~F-evGG~~WRIlVYPrGn~-~~dyLSLYLec~~~esl-~~~WS-I~AqFtL~L 138 (1080)
.+|+|+|.|||.+++ ..++|+.| .+|||+|+|.+||+|+. .++||||||+++..+.+ ...|. +.++|+|+|
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~L 81 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTL 81 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEE
Confidence 579999999999852 36999998 89999999999999975 45799999999875432 34799 589999999
Q ss_pred EeCCCC----Ccccc----c----c----ceeccC-----------------CCCCcccccccccccccc-ccccCCeEE
Q 001419 139 VNRDPK----KSKYS----D----T----LHRFWK-----------------KEHDWGWKKFMELSKVSD-GFKDGDTLI 184 (1080)
Q Consensus 139 LNQdGk----kS~sk----e----t----~h~Fs~-----------------ke~dWGwskFIswddLes-GFLVDDsLt 184 (1080)
++|++. .+++. + . ...|.. .+.+|||.+||++++|+. .||+||+|.
T Consensus 82 lDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~dtl~ 161 (167)
T cd03771 82 LDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGDDLI 161 (167)
T ss_pred ECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCCEEE
Confidence 999741 12211 0 0 001211 235899999999999995 699999999
Q ss_pred EEEEE
Q 001419 185 IKAQV 189 (1080)
Q Consensus 185 IEc~V 189 (1080)
|++.|
T Consensus 162 i~~~~ 166 (167)
T cd03771 162 ILLDF 166 (167)
T ss_pred EEEEe
Confidence 99987
No 16
>smart00061 MATH meprin and TRAF homology.
Probab=99.62 E-value=2.4e-15 Score=134.52 Aligned_cols=93 Identities=26% Similarity=0.419 Sum_probs=79.2
Q ss_pred EEEEEcCccccc-CCeeeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCCCCCCCeEEEEEEEEEEeCCCCCccc
Q 001419 70 YTWRIEKFSQIS-KRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKY 148 (1080)
Q Consensus 70 FtWkIeNFSkLk-ke~I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~esl~~~WSI~AqFtL~LLNQdGkkS~s 148 (1080)
++|+|+||+.+. ++.++|+.|.+||++|+|.+||++ +||||||+|.........|.+.|+|+|+|+|++++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~----~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~-~ 76 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN----GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL-S 76 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC----CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE-e
Confidence 689999999985 467999999999999999999995 8999999997665443479999999999999988643 3
Q ss_pred cccceeccCCCCCccccccc
Q 001419 149 SDTLHRFWKKEHDWGWKKFM 168 (1080)
Q Consensus 149 ket~h~Fs~ke~dWGwskFI 168 (1080)
....+.|.. ..+|||.+||
T Consensus 77 ~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 77 KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eeeeEEEcC-CCccceeeEC
Confidence 456788876 7899999986
No 17
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.2e-15 Score=184.86 Aligned_cols=236 Identities=21% Similarity=0.194 Sum_probs=177.2
Q ss_pred CcEEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCCCCCCCeEEEEEEEEEEeC-CCCC
Q 001419 67 YGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNR-DPKK 145 (1080)
Q Consensus 67 ~gkFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~esl~~~WSI~AqFtL~LLNQ-dGkk 145 (1080)
...++|++.+...+.. .+.++.|-.|+.+|+|++.|+++ ....+++|+.|...... ..|++++++.+.++|. +...
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVN-SLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred cccccccCcCcchhhh-HhcCccccccccceeeeeccccC-cccceeEEeeeccCCCC-cceEecchhhhccccCCCCch
Confidence 3455687777777665 68899999999999999999987 34679999999776555 5699999999999993 2222
Q ss_pred ccccccceeccCCCCCccccccccccccc---cccccCCeEEEEEEEEEEeccccccccchhhhhccccCccC--eEEEE
Q 001419 146 SKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVISFCAFWLGIDQNARRRMSREKTD--AILKV 220 (1080)
Q Consensus 146 S~sket~h~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEc~VkVis~tgiw~~fD~~~rl~DSkE~SD--V~LkV 220 (1080)
.......|.|.....+||+.+|+.|++|. .+|+++|++.++++|.|....+.- ..+|+++.++ |+|
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-------~~~d~k~~tg~~vGL-- 173 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM-------NPYDSKRLTGFPVGL-- 173 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc-------chhhhhhcCCCCccc--
Confidence 33446789999888999999999999987 499999999999999999866541 1257777766 999
Q ss_pred eceeeeehhhhhHHHhHHHHhhhhhccccccccccccceeccCCCCCCCceEeeccccchhHHHHHHHHHHhcCCCCCCC
Q 001419 221 VVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKD 300 (1080)
Q Consensus 221 ~vkKFyVsKnvLAT~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Dfq~~LEr~~LEplp~~~ 300 (1080)
||+|||||||||||.||.+..||++.+....+..++.....+ +.-||.+.-.+....-|+
T Consensus 174 --------~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v----------~~~lq~lF~~LQ~s~~k~-- 233 (1093)
T KOG1863|consen 174 --------KNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSI----------PLALQRLFYELQMSKRKY-- 233 (1093)
T ss_pred --------cCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchH----------HHHHHHHHHHHhhcCCCC--
Confidence 999999999999999999999999998877544433332222 455777777777777654
Q ss_pred CCCCccccccCCCCCCcccchhHH-HHHHhhHHhhhHHHHHH
Q 001419 301 EKGPQNRTKESNSGEDFNKDSIER-DERRLTELGRRTVEIFV 341 (1080)
Q Consensus 301 ~~~~q~~~~~~~~~~~vs~dtve~-ee~~~~Elgrr~~~ifa 341 (1080)
-...++++. +..+++.- ..+...|+.|..+++..
T Consensus 234 -Vdt~~~~~~------~~~~~~~~~~QqDvqEf~~~l~d~LE 268 (1093)
T KOG1863|consen 234 -VDTSELTKS------LGWDSNDSFEQQDVQEFLTKLLDWLE 268 (1093)
T ss_pred -cCchhhhhh------hhcccccHHhhhhHHHHHHHHHHHHH
Confidence 233444444 33333221 35666788777777665
No 18
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.33 E-value=4.5e-12 Score=129.93 Aligned_cols=122 Identities=29% Similarity=0.521 Sum_probs=94.0
Q ss_pred cEEEEEEcCcccccC-----CeeeCCcEEe-CCeEEEEEEEeCCCC---CCCeEEEEEEEeccCCC-CCCCeEE-EEEEE
Q 001419 68 GKYTWRIEKFSQISK-----RELRSNAFEV-GGYKWYILIYPQGCD---VCNHLSLFLCVANHDKL-LPGWSHF-AQFTI 136 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-----e~I~Sp~Fev-GG~~WRIlVYPrGn~---~~dyLSLYLec~~~esl-~~~WSI~-AqFtL 136 (1080)
..|+|+|.||+++.+ ..++||.|+. .||+.+|.+|++|+. .+.|||||++++.++.+ ...|.+. -+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 468999999998653 3699999988 599999999999975 36799999999987654 2479964 58999
Q ss_pred EEEeCCC---C-Ccccc----c---cc------eeccC--------------CCCCccccccccccccc-cccccCCeEE
Q 001419 137 AVVNRDP---K-KSKYS----D---TL------HRFWK--------------KEHDWGWKKFMELSKVS-DGFKDGDTLI 184 (1080)
Q Consensus 137 ~LLNQdG---k-kS~sk----e---t~------h~Fs~--------------ke~dWGwskFIswddLe-sGFLVDDsLt 184 (1080)
.|+||++ + .++.. . .. ..|.. .+.+|||..||+++.|+ .+||.||+|.
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlf 161 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLI 161 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEE
Confidence 9999974 1 11100 0 10 11322 24589999999999998 5899999999
Q ss_pred EEEEE
Q 001419 185 IKAQV 189 (1080)
Q Consensus 185 IEc~V 189 (1080)
|.+.+
T Consensus 162 I~~~~ 166 (167)
T cd03783 162 IFVDF 166 (167)
T ss_pred EEEec
Confidence 99876
No 19
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.27 E-value=1.5e-11 Score=125.91 Aligned_cols=122 Identities=20% Similarity=0.396 Sum_probs=95.0
Q ss_pred cEEEEEEcCcccccC-----CeeeCCcEEe-CCeEEEEEEEeCCCCC-CCeEEEEEEEeccCCC-CCCCeEE-EEEEEEE
Q 001419 68 GKYTWRIEKFSQISK-----RELRSNAFEV-GGYKWYILIYPQGCDV-CNHLSLFLCVANHDKL-LPGWSHF-AQFTIAV 138 (1080)
Q Consensus 68 gkFtWkIeNFSkLkk-----e~I~Sp~Fev-GG~~WRIlVYPrGn~~-~dyLSLYLec~~~esl-~~~WSI~-AqFtL~L 138 (1080)
..|+|+|.||+++.. ..++||+|+. .||+.+|.+|++|++. +.|||||++++.++.+ ...|.+. -+++|.|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~L 81 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMML 81 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEE
Confidence 479999999998753 4699999975 7999999999999753 5799999999987654 2479999 8999999
Q ss_pred EeCCC---C-Ccccc--cc------c--eec--cC-----------------CCCCccccccccccccc-cccccCCeEE
Q 001419 139 VNRDP---K-KSKYS--DT------L--HRF--WK-----------------KEHDWGWKKFMELSKVS-DGFKDGDTLI 184 (1080)
Q Consensus 139 LNQdG---k-kS~sk--et------~--h~F--s~-----------------ke~dWGwskFIswddLe-sGFLVDDsLt 184 (1080)
+||++ + .++.. .+ . ..| .. .+.+|||+.||++++|+ ..||.||.|.
T Consensus 82 lDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~if 161 (167)
T cd03782 82 LDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDDVI 161 (167)
T ss_pred EcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCeEE
Confidence 99974 2 12111 00 1 123 11 14689999999999999 5899999999
Q ss_pred EEEEE
Q 001419 185 IKAQV 189 (1080)
Q Consensus 185 IEc~V 189 (1080)
|-+.+
T Consensus 162 i~~~~ 166 (167)
T cd03782 162 FLLTM 166 (167)
T ss_pred EEEec
Confidence 98775
No 20
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.12 E-value=5.4e-05 Score=82.99 Aligned_cols=121 Identities=32% Similarity=0.634 Sum_probs=94.5
Q ss_pred cEEEEEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCCCCCeEEEEEEEeccCCCCCCCeEEEEEEEEEEeCCCCCc-
Q 001419 68 GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKS- 146 (1080)
Q Consensus 68 gkFtWkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~~~dyLSLYLec~~~esl~~~WSI~AqFtL~LLNQdGkkS- 146 (1080)
.++.|.|.||+... ..+||..|..++..|++.+||.| +++++|+++.... +|.+++.+.|.+.|+...+.
T Consensus 4 ~~~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 4 SKFTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKG----NYLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred cccceeeccCcchh-hhccccceeecCceEEEEEecCC----CEEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence 34559999999876 56899999999999999999999 4899999986542 79999999999999976532
Q ss_pred ccc-ccceeccCC--CCCccccccccccccc---cccccCCeEEEEEEEEEEecccc
Q 001419 147 KYS-DTLHRFWKK--EHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVISFCAF 197 (1080)
Q Consensus 147 ~sk-et~h~Fs~k--e~dWGwskFIswddLe---sGFLVDDsLtIEc~VkVis~tgi 197 (1080)
... .....|... ...||+..+++...+. .||+.++.+++-+.+.|.+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~ 131 (297)
T KOG1987|consen 75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGK 131 (297)
T ss_pred eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecc
Confidence 222 234444433 4789998888888776 48999998888888887765443
No 21
>PHA03098 kelch-like protein; Provisional
Probab=97.75 E-value=1.4e-05 Score=94.31 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=96.8
Q ss_pred cccCccCeEEEE--eceeeeehhhhhHH--HhHHHHhhhhhc-----cccccccccccceeccCCCCCCCceEeeccccc
Q 001419 209 MSREKTDAILKV--VVKHFFIEKEVTST--LVMDSLYSGLKA-----LEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFV 279 (1080)
Q Consensus 209 DSkE~SDV~LkV--~vkKFyVsKnvLAT--~YMnSLLqgLy~-----Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fv 279 (1080)
+..+++||.|+| +++.|++||.+||. .||.+||.+=.. |..-.++++..|.++||+.+. +.. -
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~~~~~~~~~l~y~Ytg~~~-----i~~---~ 76 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNIDYDSFNEVIKYIYTGKIN-----ITS---N 76 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecCCHHHHHHHHHHhcCCceE-----EcH---H
Confidence 367899999987 78999999999985 799999965210 111123467777888876643 221 2
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH----H-HHHHhhHHhhhHHHHHHHHhhHHHHHHHHH
Q 001419 280 LVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE----R-DERRLTELGRRTVEIFVLAHIFSNKIEVAY 354 (1080)
Q Consensus 280 l~~Dfq~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve----~-ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay 354 (1080)
++.+++.+++.|.++.|.. .|.+-+.+. ++.++.. . +.++|.+|...|+++.. ++|. ++.-
T Consensus 77 ~~~~ll~~A~~l~~~~l~~---~C~~~l~~~------l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~---~v~~ 142 (534)
T PHA03098 77 NVKDILSIANYLIIDFLIN---LCINYIIKI------IDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIE---LIYN 142 (534)
T ss_pred HHHHHHHHHHHhCcHHHHH---HHHHHHHHh------CCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHH---HHhc
Confidence 4789999999999999987 799888776 5555544 2 88999999999999976 5564 3334
Q ss_pred HHHHHHHHHHHH
Q 001419 355 QEAVALKRQEEL 366 (1080)
Q Consensus 355 ~E~~A~~rQ~~L 366 (1080)
++.+..+-.+.|
T Consensus 143 ~~~f~~l~~~~l 154 (534)
T PHA03098 143 DPDFIYLSKNEL 154 (534)
T ss_pred CchhhcCCHHHH
Confidence 455544444333
No 22
>PHA02713 hypothetical protein; Provisional
Probab=97.58 E-value=3.9e-05 Score=92.17 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=91.9
Q ss_pred hccccCccCeEEEEe-ceeeeehhhhhHH--HhHHHHhhhhhcccccccc---------------ccccceeccCCCCCC
Q 001419 207 RRMSREKTDAILKVV-VKHFFIEKEVTST--LVMDSLYSGLKALEGQSKS---------------KKTKAKLLDAEDTPP 268 (1080)
Q Consensus 207 l~DSkE~SDV~LkV~-vkKFyVsKnvLAT--~YMnSLLqgLy~Le~Fres---------------~Ks~i~l~DtDe~p~ 268 (1080)
++....++||+|+|+ ++.|.+||++||. .||.+||.+ .+++. ++..|.|+||..+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-----~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i-- 91 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-----PMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI-- 91 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-----CchhhccCceEEeccCCHHHHHHHHHHhcCCCC--
Confidence 355678999999997 7999999999984 899999854 44432 3444556665431
Q ss_pred CceEeeccccchhHHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHH
Q 001419 269 PIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLA 343 (1080)
Q Consensus 269 ~~v~v~~d~fvl~~Dfq~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-----~ee~~~~Elgrr~~~ifa~~ 343 (1080)
. .-+++|++.+++.|.++.+.. .|.+-+-+. ++.++.- -..+.|.+|..++.+|. .
T Consensus 92 -----~---~~nv~~ll~aA~~lqi~~l~~---~C~~~l~~~------l~~~NCl~i~~~~~~~~~~~L~~~a~~~i--~ 152 (557)
T PHA02713 92 -----S---SMNVIDVLKCADYLLIDDLVT---DCESYIKDY------TNHDTCIYMYHRLYEMSHIPIVKYIKRML--M 152 (557)
T ss_pred -----C---HHHHHHHHHHHHHHCHHHHHH---HHHHHHHhh------CCccchHHHHHHHHhccchHHHHHHHHHH--H
Confidence 1 125799999999999999986 698888766 5544432 15566667776655554 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 344 HIFSNKIEVAYQEAVALKRQEELIR 368 (1080)
Q Consensus 344 k~F~~ri~~Ay~E~~A~~rQ~~Ll~ 368 (1080)
++|. +++-+|.+..+..++|++
T Consensus 153 ~~f~---~v~~~~ef~~L~~~~l~~ 174 (557)
T PHA02713 153 SNIP---TLITTDAFKKTVFEILFD 174 (557)
T ss_pred HHHH---HHhCChhhhhCCHHHHHH
Confidence 6665 455567776666666653
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=97.25 E-value=0.00011 Score=86.70 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=85.0
Q ss_pred hhccccCccCeEEEEeceeeeehhhhhHH--HhHHHHhhhhhccccccccccccceec--cCCC--CC-------CCceE
Q 001419 206 RRRMSREKTDAILKVVVKHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLL--DAED--TP-------PPIVH 272 (1080)
Q Consensus 206 rl~DSkE~SDV~LkV~vkKFyVsKnvLAT--~YMnSLLqgLy~Le~Fres~Ks~i~l~--DtDe--~p-------~~~v~ 272 (1080)
.+...++++||+| +.++.|.+||++||. .||.+||.+ .++|+.. +++++ +.+. +. ++-+.
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~-----~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 15 ALSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQ-----KYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred HHHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcC-----Ccccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 3455689999998 566799999999985 799999954 6666633 44442 2110 10 11222
Q ss_pred eeccccchhHHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHHhhHH
Q 001419 273 VENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFS 347 (1080)
Q Consensus 273 v~~d~fvl~~Dfq~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~ 347 (1080)
+..+ ++++++.++..+.++.+.. .|.+-+.+. ++.++-- -+.|.|.+|..++.+|.. ++|.
T Consensus 88 it~~---nV~~ll~aA~~Lqi~~v~~---~C~~fL~~~------l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF~ 153 (480)
T PHA02790 88 IDSH---NVVNLLRASILTSVEFIIY---TCINFILRD------FRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHFL 153 (480)
T ss_pred Eecc---cHHHHHHHHHHhChHHHHH---HHHHHHHhh------CCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhHH
Confidence 3322 5899999999999998876 698888887 6665543 289999999999887766 5664
No 24
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.19 E-value=0.0035 Score=74.30 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001419 360 LKRQEELIREEEAAWLAESEQKAKRGA-AEKEKKAKKKLAKQKRNNRKGKEKKREER 415 (1080)
Q Consensus 360 ~~rQ~~Ll~E~E~e~~~e~er~~kk~~-k~kekk~~~k~akeee~~rk~~ek~~ee~ 415 (1080)
..-|.+-+.|+++++|.|.||++++.. .+++|+..+++++++|+.|+++||.+||+
T Consensus 208 ~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ 264 (591)
T KOG2412|consen 208 RKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEER 264 (591)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555666777888888888888876 44566666666777888888888844443
No 25
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.01 E-value=0.00046 Score=83.50 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=95.6
Q ss_pred ccccCccCeEEEEeceeeeehhhhhHH--HhHHHHhhhhhccccccccccccceeccCCCCC---------CCceEeecc
Q 001419 208 RMSREKTDAILKVVVKHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTP---------PPIVHVEND 276 (1080)
Q Consensus 208 ~DSkE~SDV~LkV~vkKFyVsKnvLAT--~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p---------~~~v~v~~d 276 (1080)
+..+.++||+|.|++++|.+||++||. .||.+||.+ ..+++...+|+|.+.|..- +.-+.+..
T Consensus 31 r~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~-----~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~- 104 (571)
T KOG4441|consen 31 REEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTS-----GLKESKQKEINLEGVDPETLELLLDYAYTGKLEISE- 104 (571)
T ss_pred HHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcC-----CcccccceEEEEecCCHHHHHHHHHHhhcceEEech-
Confidence 456899999999999999999999985 899999944 7888888888877733211 11111221
Q ss_pred ccchhHHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHHhhHHHHHH
Q 001419 277 MFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIE 351 (1080)
Q Consensus 277 ~fvl~~Dfq~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~ 351 (1080)
-++++|+.++..+.+..+-. .|..=|-+. +..++.. -|.+.|.||... .+.|+ -++|. .
T Consensus 105 --~nVq~ll~aA~~lQi~~v~~---~C~~fL~~~------l~~~Nclgi~~~a~~~~~~~L~~~-a~~~i-~~~F~---~ 168 (571)
T KOG4441|consen 105 --DNVQELLEAASLLQIPEVVD---ACCEFLESQ------LDPSNCLGIRRFAELHSCTELLEV-ADEYI-LQHFA---E 168 (571)
T ss_pred --HhHHHHHHHHHHhhhHHHHH---HHHHHHHhc------CCHHHHHHHHHHHHhcCcHHHHHH-HHHHH-HHHHH---H
Confidence 14677777777777766654 677766665 4333333 177777776644 34445 45565 6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001419 352 VAYQEAVALKRQEELIREE 370 (1080)
Q Consensus 352 ~Ay~E~~A~~rQ~~Ll~E~ 370 (1080)
+.-+|.+-++-+++|+.=+
T Consensus 169 v~~~eefl~L~~~~l~~ll 187 (571)
T KOG4441|consen 169 VSKTEEFLLLSLEELIGLL 187 (571)
T ss_pred HhccHHhhCCCHHHHHhhc
Confidence 7777888788888777544
No 26
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=96.96 E-value=0.0019 Score=59.96 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=64.9
Q ss_pred ccccCccCeEEEEe-ceeeeehhhhhHH--HhHHHHhhhhhccccccccccccceeccCCCCCCCceEeeccccchhHHH
Q 001419 208 RMSREKTDAILKVV-VKHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDV 284 (1080)
Q Consensus 208 ~DSkE~SDV~LkV~-vkKFyVsKnvLAT--~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Df 284 (1080)
+....++||+|+|. +++|+|||.+|+. .||..||.+= .+++....++.+.+ +.++.|
T Consensus 5 ~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~----------------~~~~~~ 64 (111)
T PF00651_consen 5 FNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPD----------------VSPEAF 64 (111)
T ss_dssp HHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETT----------------SCHHHH
T ss_pred HcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccc----cccccccccccccc----------------cccccc
Confidence 45678999999999 7999999999984 8999998551 12222222344333 347899
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHH
Q 001419 285 LLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFV 341 (1080)
Q Consensus 285 q~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-----~ee~~~~Elgrr~~~ifa 341 (1080)
..+++-+|.+.+.. . +.+.++ .+.+++.+|.+.|..++.
T Consensus 65 ~~~l~~~Y~~~~~~----~--------------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 65 EAFLEYMYTGEIEI----N--------------SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp HHHHHHHHHSEEEE----E---------------TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ccccccccCCcccC----C--------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999999887754 1 122222 278888888888887765
No 27
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.58 E-value=0.023 Score=73.08 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=3.4
Q ss_pred CCchhhh
Q 001419 923 FPHLDII 929 (1080)
Q Consensus 923 FPHLDII 929 (1080)
.||..-|
T Consensus 868 ~~~~~~~ 874 (1021)
T PTZ00266 868 LPHMNAI 874 (1021)
T ss_pred ccccchh
Confidence 4555444
No 28
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.57 E-value=0.0073 Score=72.93 Aligned_cols=7 Identities=29% Similarity=-0.054 Sum_probs=3.7
Q ss_pred CCCCCcc
Q 001419 446 EKPDVLE 452 (1080)
Q Consensus 446 ~k~d~~e 452 (1080)
.|+++.-
T Consensus 380 qk~~~k~ 386 (811)
T KOG4364|consen 380 QKIDNKF 386 (811)
T ss_pred ccccccc
Confidence 5555544
No 29
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.0075 Score=73.69 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=14.8
Q ss_pred eeccccchhHHHH---HHHHHH-hcCCCCC
Q 001419 273 VENDMFVLVDDVL---LLLERA-ALEPLPP 298 (1080)
Q Consensus 273 v~~d~fvl~~Dfq---~~LEr~-~LEplp~ 298 (1080)
|++|--..++.|. .+.|.+ .+.|||+
T Consensus 240 vd~DGkL~~dEfilam~liema~sGq~lP~ 269 (1118)
T KOG1029|consen 240 VDGDGKLSADEFILAMHLIEMAKSGQPLPK 269 (1118)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhcCCCCCC
Confidence 4555444455553 345555 7788884
No 30
>PTZ00121 MAEBL; Provisional
Probab=96.46 E-value=0.018 Score=74.29 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=3.3
Q ss_pred EEEEEEe
Q 001419 113 SLFLCVA 119 (1080)
Q Consensus 113 SLYLec~ 119 (1080)
|||-+|.
T Consensus 824 SiySyCl 830 (2084)
T PTZ00121 824 SIYSYCL 830 (2084)
T ss_pred hHHHhhc
Confidence 4454444
No 31
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.43 E-value=0.03 Score=67.88 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=6.7
Q ss_pred cCCCCCCCCCccc
Q 001419 441 AQPLPEKPDVLED 453 (1080)
Q Consensus 441 ~~~~~~k~d~~e~ 453 (1080)
.|.+-.|--+..+
T Consensus 379 fqk~~~k~~~~~~ 391 (811)
T KOG4364|consen 379 FQKIDNKFSTTCE 391 (811)
T ss_pred hcccccccCCccc
Confidence 4566655534444
No 32
>PTZ00121 MAEBL; Provisional
Probab=96.38 E-value=0.019 Score=73.95 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=4.4
Q ss_pred ccccccccc
Q 001419 28 EALAEWRSS 36 (1080)
Q Consensus 28 ~~~~~~~~~ 36 (1080)
..++.|-|.
T Consensus 573 ~~~~~~~~~ 581 (2084)
T PTZ00121 573 SNISHWNSN 581 (2084)
T ss_pred ccccccccc
Confidence 345555554
No 33
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.08 E-value=0.026 Score=69.02 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001419 365 ELIREEEAAWLAESEQKAKRGAAEKEKKAKKKL 397 (1080)
Q Consensus 365 ~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~ 397 (1080)
.-|.|+.|.+|+.+|-++|++.++.|||+.+.+
T Consensus 927 rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e 959 (1259)
T KOG0163|consen 927 RKIQELAEAERKRREAEEKRRREEEEKKRAKAE 959 (1259)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 335566666666666666666655555554433
No 34
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=95.68 E-value=0.067 Score=63.21 Aligned_cols=8 Identities=25% Similarity=0.098 Sum_probs=3.6
Q ss_pred CCCcccCC
Q 001419 484 TDASEVIP 491 (1080)
Q Consensus 484 ~d~~e~~~ 491 (1080)
+.|++.|+
T Consensus 416 ~~a~~~~~ 423 (429)
T PRK00247 416 TTTAEPNR 423 (429)
T ss_pred ccccCCCC
Confidence 33444444
No 35
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.44 E-value=0.15 Score=66.01 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=7.3
Q ss_pred ccCCcccccCCchh
Q 001419 914 QTQGVLVDEFPHLD 927 (1080)
Q Consensus 914 Q~qg~v~dEFPHLD 927 (1080)
|.-|-+.--|-||.
T Consensus 893 ~~~~~~~~~~~~~~ 906 (1021)
T PTZ00266 893 KKGGEVDRSYKHLE 906 (1021)
T ss_pred ccCcccchhhhhhh
Confidence 34445555566654
No 36
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.37 E-value=0.004 Score=71.26 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=25.9
Q ss_pred hhhhHHHhHHHHhhhhhccccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~Ks 256 (1080)
+|+|+|||||||||.||++.+||+....
T Consensus 5 ~NlGNTCYmNSlLQ~L~~i~~lR~~i~~ 32 (343)
T cd02666 5 DNIGNTCYLNSLLQYFFTIKPLRDLVLN 32 (343)
T ss_pred ccCCceeHHHHHHHHHHccHHHHHHHHc
Confidence 9999999999999999999999987653
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.42 Score=60.75 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=17.7
Q ss_pred HHHHhhhhhccccccccccccceec
Q 001419 237 MDSLYSGLKALEGQSKSKKTKAKLL 261 (1080)
Q Consensus 237 MnSLLqgLy~Le~Fres~Ks~i~l~ 261 (1080)
|..|--.+|.-+..+++++..++-.
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666677788888888877666533
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.079 Score=65.29 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 001419 781 GYIPQSYRN 789 (1080)
Q Consensus 781 sy~pqsYrn 789 (1080)
.+.|-||=.
T Consensus 857 GwFPksYVk 865 (1118)
T KOG1029|consen 857 GWFPKSYVK 865 (1118)
T ss_pred CcCcHHhhh
Confidence 477888865
No 39
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.86 E-value=0.32 Score=60.17 Aligned_cols=9 Identities=44% Similarity=0.412 Sum_probs=3.7
Q ss_pred CCCCcccCC
Q 001419 483 DTDASEVIP 491 (1080)
Q Consensus 483 ~~d~~e~~~ 491 (1080)
..|+++.-|
T Consensus 1035 v~~~~~m~P 1043 (1259)
T KOG0163|consen 1035 VNDASPMGP 1043 (1259)
T ss_pred ccccCCCCC
Confidence 334444444
No 40
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=94.85 E-value=0.068 Score=46.35 Aligned_cols=63 Identities=33% Similarity=0.287 Sum_probs=44.7
Q ss_pred CeEEEEeceeeeehhhhhHH--HhHHHHhhhhhccccccccccccceeccCCCCCCCceEeeccccchhHHHHHHHHHHh
Q 001419 215 DAILKVVVKHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAA 292 (1080)
Q Consensus 215 DV~LkV~vkKFyVsKnvLAT--~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Dfq~~LEr~~ 292 (1080)
||.|+|+++.|+|||.+|+. .||..||.. ...+.....+.+.+ +.++.|..+|+-+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~-----~~~~~~~~~i~l~~----------------~~~~~f~~~l~~ly 59 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSG-----DFKESKKSEIYLDD----------------VSPEDFRALLEFLY 59 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcC-----CCccCCCCEEEecC----------------CCHHHHHHHHHeec
Confidence 67899999999999999984 899998844 33222122222222 34788999999999
Q ss_pred cCCCCC
Q 001419 293 LEPLPP 298 (1080)
Q Consensus 293 LEplp~ 298 (1080)
...++.
T Consensus 60 ~~~~~~ 65 (90)
T smart00225 60 TGKLDL 65 (90)
T ss_pred Cceeec
Confidence 887754
No 41
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=94.65 E-value=0.14 Score=61.35 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=4.7
Q ss_pred chhhhhhhhc
Q 001419 925 HLDIINDLLD 934 (1080)
Q Consensus 925 HLDIINDLL~ 934 (1080)
|.-|||+.|+
T Consensus 522 tatll~s~Lq 531 (591)
T KOG2412|consen 522 TATLLNSFLQ 531 (591)
T ss_pred HHHHHHHHHH
Confidence 3345555554
No 42
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.36 E-value=0.086 Score=61.29 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=41.1
Q ss_pred hhccccCccCeEEEEeceeeeehhhhhH--HHhHHHHhhhhhccccccccccccceecc
Q 001419 206 RRRMSREKTDAILKVVVKHFFIEKEVTS--TLVMDSLYSGLKALEGQSKSKKTKAKLLD 262 (1080)
Q Consensus 206 rl~DSkE~SDV~LkV~vkKFyVsKnvLA--T~YMnSLLqgLy~Le~Fres~Ks~i~l~D 262 (1080)
+++...+.+||.|+|++++|.+||..|| ..||.+||.| .++++...+|.|-+
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYg-----Gm~Es~q~~ipLq~ 90 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYG-----GMQESHQQLIPLQE 90 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhh-----hhhhhhhccccccc
Confidence 5677889999999999999999999998 4899999865 56555444444433
No 43
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.16 E-value=0.084 Score=62.59 Aligned_cols=17 Identities=29% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCCCC
Q 001419 283 DVLLLLERAALEPLPPK 299 (1080)
Q Consensus 283 Dfq~~LEr~~LEplp~~ 299 (1080)
|+-.++..|+|.+||-|
T Consensus 436 d~~~lA~~YgLl~lP~M 452 (567)
T KOG0345|consen 436 DLGKLATLYGLLRLPKM 452 (567)
T ss_pred cHHHHHHHHHHHhCCCc
Confidence 67888999999999974
No 44
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=93.59 E-value=0.29 Score=54.71 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhhhHH
Q 001419 398 AKQKRNNRKGKEKKR 412 (1080)
Q Consensus 398 akeee~~rk~~ek~~ 412 (1080)
|.|+.+++|+.||+.
T Consensus 389 areerrkqkeeeklk 403 (445)
T KOG2891|consen 389 AREERRKQKEEEKLK 403 (445)
T ss_pred HHHHHHhhhHHHHHH
Confidence 444445555555543
No 45
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=93.41 E-value=0.69 Score=58.00 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=10.8
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHH
Q 001419 331 ELGRRTVEIFVLAHIFSNKIEVA 353 (1080)
Q Consensus 331 Elgrr~~~ifa~~k~F~~ri~~A 353 (1080)
..+.++-+|.--...|+++|+..
T Consensus 743 k~k~~l~rm~~d~~~f~e~vk~~ 765 (988)
T KOG2072|consen 743 KDKKRLSRMYDDRDKFKEHVKGE 765 (988)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhh
Confidence 34444444444445555444433
No 46
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=93.22 E-value=0.2 Score=60.19 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=10.8
Q ss_pred HhHHHHhhhhhcccccccc
Q 001419 235 LVMDSLYSGLKALEGQSKS 253 (1080)
Q Consensus 235 ~YMnSLLqgLy~Le~Fres 253 (1080)
+|-|+.+-+ +++.|++.
T Consensus 111 t~YNAv~R~--~~~~~~~~ 127 (489)
T PF05262_consen 111 TIYNAVYRG--DLDYFKKK 127 (489)
T ss_pred HHHHHHHcC--CHHHHHHH
Confidence 666776655 67777654
No 47
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=0.35 Score=53.26 Aligned_cols=38 Identities=29% Similarity=0.191 Sum_probs=20.1
Q ss_pred CCCCcCCCCcccCCCCccCCCCcCCCCccCCCcccccccccccC
Q 001419 478 SPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDD 521 (1080)
Q Consensus 478 s~v~~~~d~~e~~~~~~~~~~~~~~~~~~~n~~~~k~~~s~~~~ 521 (1080)
--|+-+.=||+++--|..+.| -+||=+++.--+.+|||
T Consensus 213 KvV~ledLas~f~Lrtqd~in------riq~~l~eg~ltGVmDD 250 (299)
T KOG3054|consen 213 KVVPLEDLASEFGLRTQDSIN------RIQELLAEGLLTGVMDD 250 (299)
T ss_pred CeeeHHHHHHHhCccHHHHHH------HHHHHHHhhhheeeecC
Confidence 345555556666665554444 23444444444566666
No 48
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=92.60 E-value=0.52 Score=55.96 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=2.6
Q ss_pred eccccch
Q 001419 274 ENDMFVL 280 (1080)
Q Consensus 274 ~~d~fvl 280 (1080)
.++.|.+
T Consensus 257 ~snlwtl 263 (429)
T PRK00247 257 ANNLWTL 263 (429)
T ss_pred HhhHHHH
Confidence 3333333
No 49
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.43 E-value=0.71 Score=55.66 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=5.4
Q ss_pred EEEEEEeCCC
Q 001419 134 FTIAVVNRDP 143 (1080)
Q Consensus 134 FtL~LLNQdG 143 (1080)
-+|.++|-.|
T Consensus 9 ~~i~F~Ny~g 18 (489)
T PF05262_consen 9 MTIEFINYSG 18 (489)
T ss_pred CceEEEecCC
Confidence 3455566554
No 50
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.14 E-value=1.4 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=13.6
Q ss_pred hhhHHHHHhhhhhhhh-hhccCCChh
Q 001419 408 KEKKREERSSMALSDR-LEDENPSDE 432 (1080)
Q Consensus 408 ~ek~~ee~~~~~~e~~-~~ee~~~~~ 432 (1080)
+-+++||+.++.++++ ++|++.+++
T Consensus 386 kieareerrkqkeeeklk~e~qkike 411 (445)
T KOG2891|consen 386 KIEAREERRKQKEEEKLKAEEQKIKE 411 (445)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455666665555555 555554444
No 51
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=91.75 E-value=0.55 Score=58.82 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001419 353 AYQEAVALKRQEELIREEEA-AWLAESEQ 380 (1080)
Q Consensus 353 Ay~E~~A~~rQ~~Ll~E~E~-e~~~e~er 380 (1080)
.|.|.+--.||..+-+-+-+ ++++++||
T Consensus 757 ~f~e~vk~~rqs~~~e~~~~~ea~leaer 785 (988)
T KOG2072|consen 757 KFKEHVKGERQSEYEEKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 36667766777766655533 55666666
No 52
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=91.34 E-value=2.1 Score=43.92 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001419 357 AVALKRQEELIREEEAAWLAESEQKAKRGA 386 (1080)
Q Consensus 357 ~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~ 386 (1080)
++-..|+++....++++++.++|-++.+.+
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e 78 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888877777665555544
No 53
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=91.19 E-value=1.5 Score=52.45 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 335 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 335 r~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
.+|.|+++--++. ++..----++..+||+++..++++++..+++-++.+
T Consensus 7 qlInFlIl~~lL~-kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~ 55 (445)
T PRK13428 7 QLIGFAVIVFLVW-RFVVPPVRRLMAARQDTVRQQLAESATAADRLAEAD 55 (445)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544443 232222345667889999999988876655544433
No 54
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=91.00 E-value=2 Score=47.33 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 334 RRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 334 rr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
-.+|.|+++--++. ++.---=-++...|+++....++++++.++|-++.+
T Consensus 10 ~qiInFlil~~lL~-kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 59 (246)
T TIGR03321 10 AQLINFLILVWLLK-RFLYRPILDAMDAREKKIAGELADADTKKREAEQER 59 (246)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555553 222222234557788888888877776655443333
No 55
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=90.76 E-value=0.63 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=16.0
Q ss_pred HHHHhhhhhccccccccccccceeccCCCCCCCceE
Q 001419 237 MDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVH 272 (1080)
Q Consensus 237 MnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~ 272 (1080)
|+.|...-|||.-++ +..+.+.+|...+.
T Consensus 137 ~~~~r~~~~dLs~~t-------~~~~~~~Lp~~~~v 165 (321)
T PF07946_consen 137 MKKLRKDNYDLSLFT-------KTSESPKLPESLVV 165 (321)
T ss_pred HHHHHHhCcchhhcc-------ccccccCCCcceEE
Confidence 666666666665433 22345566766654
No 56
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=90.57 E-value=0.068 Score=60.90 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=24.9
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.++||||||+||.||++..|++..+
T Consensus 28 ~NlGnTCYmNSvLQ~L~~~p~fr~~l~ 54 (332)
T cd02671 28 NNLGNTCYLNSVLQVLYFCPGFKHGLK 54 (332)
T ss_pred eccCceEeHHHHHHHHHcChHHHHHHH
Confidence 999999999999999999999996644
No 57
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=90.05 E-value=3.2 Score=43.38 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=31.7
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
+-..+|.|+++--++. ++.---=-++-..|++++...+++++...+|-++...
T Consensus 21 ~~~~~i~Flil~~lL~-~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 73 (175)
T PRK14472 21 IFWTAVTFVIVLLILK-KIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILR 73 (175)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677666555553 2322223445578888888888887776655444443
No 58
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=90.04 E-value=3.2 Score=42.74 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 333 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 333 grr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
-..+|.|+++--++. |+.-----++-.+|+++...++++++..++|-++.+.
T Consensus 12 ~~~~i~Flil~~ll~-~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 63 (164)
T PRK14471 12 FWQTILFLILLLLLA-KFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQA 63 (164)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444442 2222222345567788888888877766655444443
No 59
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=89.90 E-value=0.72 Score=52.69 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=5.7
Q ss_pred CCeEEEEE
Q 001419 180 GDTLIIKA 187 (1080)
Q Consensus 180 DDsLtIEc 187 (1080)
.|.|+|++
T Consensus 110 ~D~v~i~i 117 (321)
T PF07946_consen 110 KDRVTIEI 117 (321)
T ss_pred CCeEEEEE
Confidence 57777777
No 60
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=89.88 E-value=0.098 Score=58.95 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=25.3
Q ss_pred hhhhHHHhHHHHhhhhhccccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~Ks 256 (1080)
+|.++||||||+||.||++..|++....
T Consensus 3 ~NlGnTCY~NS~LQ~L~~~~~fr~~ll~ 30 (327)
T cd02664 3 INLGNTCYMNSVLQALFMAKDFRRQVLS 30 (327)
T ss_pred cCCcccHHHHHHHHHHHCcHHHHHHHHc
Confidence 8999999999999999999999976543
No 61
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=89.87 E-value=1.2 Score=52.51 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=5.6
Q ss_pred HhHHHHhhhhhcc
Q 001419 235 LVMDSLYSGLKAL 247 (1080)
Q Consensus 235 ~YMnSLLqgLy~L 247 (1080)
..|+-||++|-.+
T Consensus 19 v~LHvlLi~lLi~ 31 (387)
T PRK09510 19 VVLHIILFALLIW 31 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 62
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=1.8 Score=48.05 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.5
Q ss_pred hhhhhccc
Q 001419 434 KEFIVEDA 441 (1080)
Q Consensus 434 ~~~~~~~~ 441 (1080)
+=.++|.|
T Consensus 175 EylkmKaa 182 (299)
T KOG3054|consen 175 EYLKMKAA 182 (299)
T ss_pred HHHHHHhh
Confidence 34444433
No 63
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=89.65 E-value=3 Score=45.10 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001419 331 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 386 (1080)
Q Consensus 331 Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~ 386 (1080)
.+-.-+|.|++|--++. |+..=-=-++..+|++++...++++++.+.|-++.+.+
T Consensus 55 ~l~w~~I~FliL~~lL~-k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ 109 (204)
T PRK09174 55 QLLWLAITFGLFYLFMS-RVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAA 109 (204)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667666554443 32222244566888999999998888777665555544
No 64
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=89.54 E-value=3.5 Score=44.54 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=30.4
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAK 383 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~k 383 (1080)
+--.+|.|+++.-+|. ++.-----++...|+++...++++++...+|-++.
T Consensus 51 ~i~qlInFlIlv~lL~-k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~ 101 (205)
T PRK06231 51 FIAHLIAFSILLLLGI-FLFWKPTQRFLNKRKELIEAEINQANELKQQAQQL 101 (205)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666664 22222234556778888888887776655544333
No 65
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=89.48 E-value=0.24 Score=58.08 Aligned_cols=76 Identities=28% Similarity=0.449 Sum_probs=61.8
Q ss_pred cCcEEEEEEcCccccc-------CCeeeCCcEEe--CCeEEEEEEEeCCCC--CCCeEEEEEEEeccCCC-CCCCeEEEE
Q 001419 66 LYGKYTWRIEKFSQIS-------KRELRSNAFEV--GGYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQ 133 (1080)
Q Consensus 66 ~~gkFtWkIeNFSkLk-------ke~I~Sp~Fev--GG~~WRIlVYPrGn~--~~dyLSLYLec~~~esl-~~~WSI~Aq 133 (1080)
..+++.|+|.+|...+ ...++|+.|+. +||+.+..+|-+|+. .+.++|+|+.+...+.+ ...|.+.-.
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~ 357 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK 357 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence 4689999999995443 13589999986 799999888888764 46799999999887654 237999999
Q ss_pred EEEEEEeC
Q 001419 134 FTIAVVNR 141 (1080)
Q Consensus 134 FtL~LLNQ 141 (1080)
++|.|+++
T Consensus 358 v~~~l~dq 365 (391)
T KOG0297|consen 358 VTLMLLDQ 365 (391)
T ss_pred eEEEEecc
Confidence 99999998
No 66
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=89.44 E-value=2.9 Score=46.41 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 334 RRTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQ 380 (1080)
Q Consensus 334 rr~~~ifa~~k~F~~ri~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~e~er 380 (1080)
-.+|.|++|--+++ +..|+ =++-.+|++++..++++++..++|-
T Consensus 10 ~qiInFlILv~lL~---~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA 55 (250)
T PRK14474 10 AQIINFLILVYLLR---RFLYKPIIQVMKKRQQRIANRWQDAEQRQQEA 55 (250)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666555554 23322 3445677888888887766654443
No 67
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=89.26 E-value=4 Score=42.74 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 333 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 333 grr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
...+|.|++|--++. |+..--=-++-..|++++..++++++...+|-++.+.
T Consensus 22 ~~~iInFliL~~lL~-~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 73 (173)
T PRK13453 22 IVTVLTFIVLLALLK-KFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEE 73 (173)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556555544443 2222222344567888888888877766555444443
No 68
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=89.05 E-value=3.9 Score=42.72 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=31.0
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQ--EAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~--E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
+-..+|.|+++--++. +.+|+ -++-.+|++++..++++.+....+-+..+.
T Consensus 25 ~~~~~inflil~~lL~---~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~ 77 (167)
T PRK08475 25 IIERTINFLIFVGILW---YFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKE 77 (167)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777665554 23332 345578888888888877666555444433
No 69
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=88.87 E-value=4.4 Score=42.30 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 335 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 335 r~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
.+|.|+++--+|. ++.--.=-++...||+++...+++++...++-++..
T Consensus 25 ~iinflIl~~lL~-~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~ 73 (174)
T PRK07352 25 NLINLAIVIGLLY-YFGRGFLGKILEERREAILQALKEAEERLRQAAQAL 73 (174)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555553 233223456678889999988888776655544433
No 70
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=88.82 E-value=3.8 Score=43.33 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 331 ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 331 Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
.+-+-+|-||+|--++. |+..-==-++..+|++++...+++.+..+.+-+..+
T Consensus 33 q~~~~lI~F~iL~~ll~-k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 85 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLT-RVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAE 85 (181)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555666666544443 222222245567788888777777666555443333
No 71
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=88.73 E-value=0.12 Score=58.00 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=24.8
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.++||||||+||.||++.+|++...
T Consensus 3 ~NlGnTCY~NsvLQ~L~~~~~fr~~~l 29 (324)
T cd02668 3 KNLGATCYVNSFLQLWFMNLEFRKAVY 29 (324)
T ss_pred ccCCceeHHHHHHHHHHCCHHHHHHHH
Confidence 799999999999999999999997654
No 72
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=88.20 E-value=5.8 Score=39.59 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 356 EAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
-++-..|++++...+++++....+-++...
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~ 60 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEA 60 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888777766655544444
No 73
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=88.14 E-value=3.8 Score=43.16 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 336 TVEIFVLAHIFSNKIEVAYQ---EAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~---E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
+|.|+++.-++. ..+|. -++-..||+++..+++++++.++|-+++..
T Consensus 33 ~inflil~~iL~---~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~ 82 (184)
T PRK13455 33 TLAFLLFIGILV---YFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLA 82 (184)
T ss_pred HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666555553 22321 456788999999999888777665544443
No 74
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=88.09 E-value=5.8 Score=41.41 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=29.2
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
....+|.|+++--++. ++..--=-++-..|+++...++++++....|-++.+
T Consensus 19 ~~~~~i~Flil~~iL~-~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 70 (173)
T PRK13460 19 VVWTLVTFLVVVLVLK-KFAWDVILKALDERASGVQNDINKASELRLEAEALL 70 (173)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666544443 222222244557788888888877776655543333
No 75
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=88.07 E-value=1.9 Score=49.24 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=7.7
Q ss_pred HHHHhhhhhhhhhhccC
Q 001419 412 REERSSMALSDRLEDEN 428 (1080)
Q Consensus 412 ~ee~~~~~~e~~~~ee~ 428 (1080)
+.|++++++++++++++
T Consensus 166 ~aeAkkkAe~a~kA~ee 182 (387)
T COG3064 166 AAEAKKKAEEAAKAAEE 182 (387)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 76
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=87.68 E-value=1.3 Score=51.46 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=8.3
Q ss_pred HHhHHHHhhhhhcccc
Q 001419 234 TLVMDSLYSGLKALEG 249 (1080)
Q Consensus 234 T~YMnSLLqgLy~Le~ 249 (1080)
++.|+.||++|..++.
T Consensus 7 Sv~lHvlLi~lL~~g~ 22 (346)
T TIGR02794 7 SLLLHILLLGLLILGS 22 (346)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4455556555544443
No 77
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=87.64 E-value=5.4 Score=41.49 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001419 356 EAVALKRQEELIREEEAAWLAESEQKAKRGA 386 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~ 386 (1080)
-++-..|++++..+++++++.++|-++.+.+
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~ 66 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLAD 66 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999888777766555543
No 78
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=87.57 E-value=5.7 Score=41.85 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 335 RTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 335 r~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
.+|.|+++--++. ++.--.=-++-.+||+.+...++++++...+-+++.
T Consensus 30 ~~Inflill~lL~-~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 78 (184)
T CHL00019 30 NLINLSVVLGVLI-YFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKL 78 (184)
T ss_pred HHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666554443 222233345567788888888887776655443333
No 79
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=87.51 E-value=9.3 Score=40.05 Aligned_cols=54 Identities=15% Similarity=-0.047 Sum_probs=36.3
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA 386 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~ 386 (1080)
+=+-+|.|+++--+|+ |+..=-=.++...||.++-..++++++.++|-++.+++
T Consensus 13 ifw~iI~FlILy~ll~-kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ 66 (155)
T PRK06569 13 IFWLIVTFGLLYIFVY-KFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKY 66 (155)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445666666555553 33333345677889999999999988887776666655
No 80
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=87.42 E-value=0.18 Score=56.26 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=26.3
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKKTK 257 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~Ks~ 257 (1080)
+|.+.||||||+||.|+++..|++.....
T Consensus 6 ~N~GntCY~NsvLQ~L~~~~~f~~~~l~~ 34 (334)
T cd02659 6 KNQGATCYMNSLLQQLYMTPEFRNAVYSI 34 (334)
T ss_pred ccCCcchHHHHHHHHHhcCHHHHHHHHcC
Confidence 89999999999999999999999776553
No 81
>COG4499 Predicted membrane protein [Function unknown]
Probab=87.22 E-value=1.2 Score=52.14 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=13.0
Q ss_pred CCcEEeCCe-----EEEEEEEeCC
Q 001419 87 SNAFEVGGY-----KWYILIYPQG 105 (1080)
Q Consensus 87 Sp~FevGG~-----~WRIlVYPrG 105 (1080)
+++|.+..+ .|.|.+-|..
T Consensus 48 ~~~f~~~eit~~~Ds~vIsy~i~~ 71 (434)
T COG4499 48 SPPFIVAEITEDNDSFVISYPIPE 71 (434)
T ss_pred CCCccceeecccCceeEEEecCcc
Confidence 677766544 7888877654
No 82
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=86.98 E-value=6.4 Score=40.62 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 357 AVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 357 ~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
++-..|++++...+++++...++-++.+
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~ 62 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAK 62 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888877776655544333
No 83
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=86.92 E-value=3.1 Score=47.69 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=8.4
Q ss_pred HHhHHHHhhhhhcccccc
Q 001419 234 TLVMDSLYSGLKALEGQS 251 (1080)
Q Consensus 234 T~YMnSLLqgLy~Le~Fr 251 (1080)
+..|.-+|++|--++.|.
T Consensus 18 S~vLH~iLfalLIwgS~~ 35 (387)
T COG3064 18 SAVLHIILFALLIWGSLD 35 (387)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 344455555544444443
No 84
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.48 E-value=3.8 Score=48.47 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=14.5
Q ss_pred cccccccccc----ccc-cCCeEEEEEEE
Q 001419 166 KFMELSKVSD----GFK-DGDTLIIKAQV 189 (1080)
Q Consensus 166 kFIswddLes----GFL-VDDsLtIEc~V 189 (1080)
+++++.+|.+ -++ +.|.++|++.+
T Consensus 190 ~l~~RqDl~S~v~~~v~P~~D~vt~ev~l 218 (440)
T KOG2357|consen 190 KLVKRQDLLSRVMNSVRPVGDQVTFEVTL 218 (440)
T ss_pred hhhhhccHHHHHHHhcccccceEEEEEec
Confidence 5667777664 122 24777777665
No 85
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=86.02 E-value=9.3 Score=43.70 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001419 333 GRRTVEIFVLAHIFSNKIEVAYQEAV--ALKRQEELIREEEAAWLAESEQ 380 (1080)
Q Consensus 333 grr~~~ifa~~k~F~~ri~~Ay~E~~--A~~rQ~~Ll~E~E~e~~~e~er 380 (1080)
=.=+|+++| .|.++|-++..+.|-. ++.+|++..+++..+++.+-+|
T Consensus 130 V~PiLeVLV-gKtlEQAl~EV~EEeEL~~lr~~q~~fe~~R~aEl~e~qr 178 (291)
T PF06098_consen 130 VKPILEVLV-GKTLEQALMEVMEEEELAALRRQQRAFEELRNAELAEVQR 178 (291)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888 8888877777766543 4455666677776666666655
No 86
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=85.87 E-value=9.1 Score=38.97 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 356 EAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
-++...|+++.-..++++++.+++-++.+.
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 62 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEH 62 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777766555444433
No 87
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=85.81 E-value=8.4 Score=40.24 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001419 334 RRTVEIFVLAHIFSNKIEVAYQE--AVALKRQEELIREEEAAWLAESEQKAKRGA 386 (1080)
Q Consensus 334 rr~~~ifa~~k~F~~ri~~Ay~E--~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~ 386 (1080)
.-+|-|++|--+|+ +.+|+= ++-..|+++.-.+++++++.++|-+.-+.+
T Consensus 9 wq~I~FlIll~ll~---kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e 60 (154)
T PRK06568 9 WLAVSFVIFVYLIY---RPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQ 60 (154)
T ss_pred HHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 333332 334677788888888887776665444443
No 88
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=85.74 E-value=0.27 Score=54.27 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=24.5
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.++||||||+||.|+++..|++...
T Consensus 3 ~N~GntCy~NsvLQ~L~~~~~f~~~~~ 29 (305)
T cd02657 3 TNLGNTCYLNSTLQCLRSVPELRDALK 29 (305)
T ss_pred ccccchhHHHHHHHHHhCCHHHHHHHH
Confidence 799999999999999999999996543
No 89
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=85.29 E-value=0.27 Score=54.17 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=24.4
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.++||||||.||.|+++..|++.+.
T Consensus 3 ~N~GntCy~NsvLQ~L~~~~~~~~~~l 29 (279)
T cd02667 3 SNLGNTCFFNAVMQNLSQTPALRELLS 29 (279)
T ss_pred cCCCCchHHHHHHHHHhcCHHHHHHHH
Confidence 789999999999999999999996544
No 90
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=85.25 E-value=0.3 Score=53.15 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=24.5
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.+.||||||+||.|++++.|++...
T Consensus 5 ~N~gntCY~NsvLQ~L~~~~~~~~~~~ 31 (304)
T cd02661 5 QNLGNTCFLNSVLQCLTHTPPLANYLL 31 (304)
T ss_pred cccCchhHHHHHHHHhhCCHHHHHHHh
Confidence 899999999999999999999996543
No 91
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=85.23 E-value=11 Score=38.75 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=25.8
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESE 379 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~e 379 (1080)
+...+|.|++|--++. ++.---=-++-..|+++....+++++....+
T Consensus 8 ~~~~~inF~il~~iL~-~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~e 54 (159)
T PRK13461 8 IIATIINFIILLLILK-HFFFDKIKAVIDSRQSEIDNKIEKADEDQKK 54 (159)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666555553 2222222344567788888777776655443
No 92
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=85.20 E-value=0.28 Score=54.33 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=24.6
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.|.||||||+||.|+++..|++...
T Consensus 3 ~NlGNTCY~NsvLQ~L~~~~~f~~~l~ 29 (311)
T cd02658 3 RNLGNSCYLNSVLQVLFSIPSFQWRYD 29 (311)
T ss_pred ccCCcchHHHHHHHHHHCCHHHHHHHh
Confidence 789999999999999999999997654
No 93
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=84.68 E-value=0.33 Score=52.40 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.4
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.++||||||.||.|+++..|++-..
T Consensus 3 ~N~g~tCy~ns~lQ~L~~~~~f~~~~~ 29 (240)
T cd02662 3 VNLGNTCFMNSVLQALASLPSLIEYLE 29 (240)
T ss_pred cCCCCccHHHHHHHHHHCCHHHHHHHH
Confidence 889999999999999999999996543
No 94
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=84.39 E-value=11 Score=37.86 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 357 AVALKRQEELIREEEAAWLAESEQ 380 (1080)
Q Consensus 357 ~~A~~rQ~~Ll~E~E~e~~~e~er 380 (1080)
++-..|+++...++++++....+-
T Consensus 22 ~~l~~R~~~I~~~l~~A~~~~~ea 45 (147)
T TIGR01144 22 KAIETRQKKIADGLASAERAKKEA 45 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777766554443
No 95
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=82.78 E-value=6.6 Score=45.72 Aligned_cols=14 Identities=14% Similarity=0.015 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHhcC
Q 001419 281 VDDVLLLLERAALE 294 (1080)
Q Consensus 281 ~~Dfq~~LEr~~LE 294 (1080)
+..+..-.+++.-.
T Consensus 45 ~~~v~~~~~~~~~q 58 (346)
T TIGR02794 45 PGAVAQQANRIQQQ 58 (346)
T ss_pred hhhhhhhhhhhhhh
Confidence 34444444444333
No 96
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=82.70 E-value=4.2 Score=48.29 Aligned_cols=29 Identities=31% Similarity=0.196 Sum_probs=14.1
Q ss_pred CcccCCCCccCCCCcCCCCccCCCccccc
Q 001419 486 ASEVIPPTEASSSGVCNLSSVPNGVTEKR 514 (1080)
Q Consensus 486 ~~e~~~~~~~~~~~~~~~~~~~n~~~~k~ 514 (1080)
.+|.+-.|-++++.+.+....+|-+...+
T Consensus 246 p~E~e~st~~s~s~~~~~~pepemv~p~k 274 (583)
T KOG3809|consen 246 PSEREFSTQDSMSAVNGDAPEPEMVTPNK 274 (583)
T ss_pred chhhhccccchhhhcCCCCCCcccCCCcc
Confidence 34444444455555554444445444444
No 97
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=14 Score=44.36 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=6.6
Q ss_pred hhhhhhccccccCCC
Q 001419 760 LLARSVSAAGRLGPD 774 (1080)
Q Consensus 760 lLsRS~sa~gr~g~d 774 (1080)
|.+|++ +.++|-|
T Consensus 399 m~Arel--Ar~SGlD 411 (630)
T KOG0742|consen 399 MFAREL--ARHSGLD 411 (630)
T ss_pred HHHHHH--HhhcCCc
Confidence 555554 3455554
No 98
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=82.55 E-value=0.44 Score=53.04 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=25.0
Q ss_pred hhhhHHHhHHHHhhhhhccccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~Ks 256 (1080)
+|++.||||||+||.|++++.|++....
T Consensus 4 ~N~gntCY~NsvLQ~L~~~~~f~~~ll~ 31 (328)
T cd02660 4 INLGATCFMNVILQALLHNPLLRNYFLS 31 (328)
T ss_pred cccCcchHHHHHHHHHhcCHHHHHHHhc
Confidence 7899999999999999999999976543
No 99
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=82.54 E-value=14 Score=43.64 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=45.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hhhhhhhHHHHH
Q 001419 342 LAHIFSNKIEVAYQEAVALKRQEELIRE-----EEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRN-NRKGKEKKREER 415 (1080)
Q Consensus 342 ~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E-----~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~-~rk~~ek~~ee~ 415 (1080)
+++-+.-.|..+-+|---+.||+..++- .|+.++.++|-.++.++...|=-++.+.|.||+. -||+++-+++|-
T Consensus 286 lar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keL 365 (442)
T PF06637_consen 286 LARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKEL 365 (442)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777778888777777655443 4555555555555555555666666666766652 345555555543
Q ss_pred h
Q 001419 416 S 416 (1080)
Q Consensus 416 ~ 416 (1080)
+
T Consensus 366 e 366 (442)
T PF06637_consen 366 E 366 (442)
T ss_pred H
Confidence 3
No 100
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=82.50 E-value=18 Score=36.71 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 333 GRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQ 380 (1080)
Q Consensus 333 grr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er 380 (1080)
-..+|.|+++--++. |+..-=--++-..|+.++...+++++....+-
T Consensus 8 ~~~~i~Flil~~il~-~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a 54 (156)
T PRK05759 8 IGQLIAFLILVWFIM-KFVWPPIMKALEERQKKIADGLAAAERAKKEL 54 (156)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444443 21111122344566777777776665554443
No 101
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=82.37 E-value=0.41 Score=53.18 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=17.5
Q ss_pred hhhhHHHhHHHHhhhhhc
Q 001419 229 KEVTSTLVMDSLYSGLKA 246 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~ 246 (1080)
+|+|+||||||+||.|++
T Consensus 3 ~NlGnTCY~NsvLQ~L~~ 20 (300)
T cd02663 3 ENFGNTCYCNSVLQALYF 20 (300)
T ss_pred cCCCcceehhHHHHHhhh
Confidence 899999999999999998
No 102
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=81.83 E-value=0.54 Score=48.95 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=25.4
Q ss_pred hhhhHHHhHHHHhhhhhccccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~Ks 256 (1080)
+|.+.+|||||.||.|+++..|++....
T Consensus 5 ~N~gntCylNs~lQ~L~~~~~~~~~l~~ 32 (269)
T PF00443_consen 5 QNIGNTCYLNSVLQCLFHIPPFRNYLLS 32 (269)
T ss_dssp SBSSSTHHHHHHHHHHHTSHHHHHHHHT
T ss_pred EeCCCchHHhHHHHhhhhhhhhhhhhhh
Confidence 8999999999999999999999976554
No 103
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=81.72 E-value=13 Score=40.32 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001419 368 REEEAAWLAESEQKAKR 384 (1080)
Q Consensus 368 ~E~E~e~~~e~er~~kk 384 (1080)
.+.|++..++++|+++.
T Consensus 156 ~k~e~~a~a~~~r~erl 172 (225)
T KOG4848|consen 156 VKQEQEADAKEVRLERL 172 (225)
T ss_pred HHhHHHhhHHHHHHHHH
Confidence 33444444445555444
No 104
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=81.05 E-value=18 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 350 IEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 350 i~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
|.....++-..+.+.+-|.++-++.+.+.++++.+
T Consensus 40 I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 40 VQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333333333333333333333
No 105
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.91 E-value=72 Score=39.65 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=32.2
Q ss_pred hhhhhHHHHHhhhhhhhhhhccCCChhhhhhhhcccCCCCCCCCCccc---cccCCCCCCCCccc
Q 001419 406 KGKEKKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLED---VSDVSDSVDGGAEV 467 (1080)
Q Consensus 406 k~~ek~~ee~~~~~~e~~~~ee~~~~~~~~~~~~~~~~~~~k~d~~e~---~sd~sd~~d~~~e~ 467 (1080)
||+|+..+|+..-...-+++|+.-.+- -+.+-++|--+.+-...... .+|+|||-|.+-|.
T Consensus 431 kEKEql~~EkQeL~~yi~~Le~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~de~p~~ 494 (546)
T PF07888_consen 431 KEKEQLQEEKQELLEYIERLEQRLDKV-ADEKWKEAAALTEDATAASPPSCPADLSDSEDESPED 494 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccccccCccccccCCCCCcCCCCcccCCccc
Confidence 566666666666555555665332222 22233344444433333222 27788888887764
No 106
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=80.83 E-value=0.53 Score=55.69 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=25.0
Q ss_pred hhhhHHHhHHHHhhhhhcccccccccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~K 255 (1080)
+|.++||||||.||.|+++.+|++.+.
T Consensus 123 ~NlGnTCYmNsvLQ~L~~~p~lr~~~l 149 (440)
T cd02669 123 NNIKNNDYANVIIQALSHVKPIRNFFL 149 (440)
T ss_pred cCCCCchHHHHHHHHHHCCHHHHHHHh
Confidence 999999999999999999999997654
No 107
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=80.74 E-value=1.3 Score=54.67 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhh
Q 001419 348 NKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGA---AEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRL 424 (1080)
Q Consensus 348 ~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~---k~kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~~ 424 (1080)
.-|++|-+|--|+.-+.+=+.|+|+....++++++-+.. +|+|...++.+.+++++.|++.++..+...+.+.+.++
T Consensus 673 ~~feAaSKELAaL~~RA~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 752 (1136)
T KOG4786|consen 673 YFFEAASKELAALKERAERLKKLEEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKEIMERKK 752 (1136)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccccchhhhhccchhhHHHHhhcccccccCcchhhhhhhhhHHHHHHHHhhhhh
Confidence 444788889888888888888888877666666655543 66777777777888899998888765544444444444
Q ss_pred hc
Q 001419 425 ED 426 (1080)
Q Consensus 425 ~e 426 (1080)
+|
T Consensus 753 ~E 754 (1136)
T KOG4786|consen 753 RE 754 (1136)
T ss_pred hc
Confidence 44
No 108
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.63 E-value=9.9 Score=44.16 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhcCCCCC
Q 001419 280 LVDDVLLLLERAALEPLPP 298 (1080)
Q Consensus 280 l~~Dfq~~LEr~~LEplp~ 298 (1080)
+-.||-.+-|.+..|-.|.
T Consensus 64 LqRDf~~l~Ek~D~EK~p~ 82 (561)
T KOG1103|consen 64 LQRDFAILGEKIDEEKIPQ 82 (561)
T ss_pred HHHHHHHHhccccccccce
Confidence 5679999999988888876
No 109
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=80.63 E-value=24 Score=39.29 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=11.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHH
Q 001419 335 RTVEIFVLAHIFSNKIEVAYQ 355 (1080)
Q Consensus 335 r~~~ifa~~k~F~~ri~~Ay~ 355 (1080)
=+|=+|+|-+.|..-|..+..
T Consensus 15 FlILv~lL~~fl~kPi~~~l~ 35 (250)
T PRK14474 15 FLILVYLLRRFLYKPIIQVMK 35 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666444444433
No 110
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=80.43 E-value=3.4 Score=47.87 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=6.8
Q ss_pred CeEEEEEEEeCC
Q 001419 94 GYKWYILIYPQG 105 (1080)
Q Consensus 94 G~~WRIlVYPrG 105 (1080)
++.++|.-.|+|
T Consensus 91 nlslki~R~PqG 102 (405)
T KOG2963|consen 91 NLSLKIARTPQG 102 (405)
T ss_pred ceeEEEEecCCC
Confidence 455555555655
No 111
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=79.89 E-value=7 Score=47.14 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=77.9
Q ss_pred cccCccCeEEEEec-----eeeeehhhhhHH--HhHHHHhhhhhccccccccccccceeccCCCCCCCceEeeccccchh
Q 001419 209 MSREKTDAILKVVV-----KHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLV 281 (1080)
Q Consensus 209 DSkE~SDV~LkV~v-----kKFyVsKnvLAT--~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~ 281 (1080)
.....+||-++|++ +.|+.||.+||. -.|+.||.| ...++...+|++-| |.+
T Consensus 110 ~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g-----~~a~~~s~ei~lpd----------------vep 168 (521)
T KOG2075|consen 110 NNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYG-----GLAEDASLEIRLPD----------------VEP 168 (521)
T ss_pred cCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhcc-----CcccccCceeecCC----------------cCh
Confidence 34567888888873 899999999985 789999977 44444566777666 347
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHHHHhhHHHHHHHHHHH
Q 001419 282 DDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFVLAHIFSNKIEVAYQE 356 (1080)
Q Consensus 282 ~Dfq~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-----~ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E 356 (1080)
.-|+.||.-+|.+-.++ ..|+|- -..|..+=|.|-|+.|.- .+++- ..++
T Consensus 169 aaFl~~L~flYsdev~~-------------------~~dtvi~tl~~AkKY~VpaLer~CVkflr-~~l~~---~naf-- 223 (521)
T KOG2075|consen 169 AAFLAFLRFLYSDEVKL-------------------AADTVITTLYAAKKYLVPALERQCVKFLR-KNLMA---DNAF-- 223 (521)
T ss_pred hHhHHHHHHHhcchhhh-------------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhcCC---hHHH--
Confidence 78999999999866654 244443 166777777788887433 33333 2333
Q ss_pred HHHHHHH-HHHHHHHHHHHH
Q 001419 357 AVALKRQ-EELIREEEAAWL 375 (1080)
Q Consensus 357 ~~A~~rQ-~~Ll~E~E~e~~ 375 (1080)
+++-| .+|.+|=+.-.+
T Consensus 224 --~~L~q~A~lf~ep~Li~~ 241 (521)
T KOG2075|consen 224 --LELFQRAKLFDEPSLISI 241 (521)
T ss_pred --HHHHHHHHhhcCHHHHHH
Confidence 34444 555555544443
No 112
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=79.17 E-value=3.9 Score=47.12 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHhhhhhhhhh
Q 001419 365 ELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAK-QKRNNRKGKEKKREERSSMALSDRL 424 (1080)
Q Consensus 365 ~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~ak-eee~~rk~~ek~~ee~~~~~~e~~~ 424 (1080)
+-|.|.++.++.+.+|.++..++-|+|..+.+++. ++|+..-+..++.+++..+.++++|
T Consensus 83 k~l~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk 143 (361)
T KOG3634|consen 83 KPLGEYEDFDRIEREREEKELKELKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERK 143 (361)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHH
Confidence 33667777777777777777776666666665533 3333333333344444444444444
No 113
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=78.96 E-value=0.76 Score=51.16 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=28.4
Q ss_pred cCccC-eEEEEeceeeeehhhhhHHHhHHHHhhhhhcccccccc
Q 001419 211 REKTD-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKS 253 (1080)
Q Consensus 211 kE~SD-V~LkV~vkKFyVsKnvLAT~YMnSLLqgLy~Le~Fres 253 (1080)
...|. +|| .+.+++||+|+|||.||+++.||+.
T Consensus 10 ~n~t~~~gl----------~~~~~~~y~n~~lq~~~~~~~~~~~ 43 (268)
T cd02672 10 YNKTNYAGL----------ENHITNSYCNSLLQLLYFIPPFRNF 43 (268)
T ss_pred ccccccccc----------ccCCccchHHHHHHHHHhcHHHHHH
Confidence 34555 777 8999999999999999999999953
No 114
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=78.90 E-value=16 Score=44.74 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=19.1
Q ss_pred HHHhhhhhhhHHHHHhhhhhhhhhhccCCCh
Q 001419 401 KRNNRKGKEKKREERSSMALSDRLEDENPSD 431 (1080)
Q Consensus 401 ee~~rk~~ek~~ee~~~~~~e~~~~ee~~~~ 431 (1080)
-|+.|-|.|+++-|+ .+.+++|+.+++++.
T Consensus 665 LERErmErERLEreR-M~ve~eRr~eqeRih 694 (940)
T KOG4661|consen 665 LERERMERERLERER-MKVEEERRDEQERIH 694 (940)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhcchhhhhh
Confidence 344555666666666 556677777777776
No 115
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=78.88 E-value=16 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001419 345 IFSNKIEVAYQEAVALKRQEEL 366 (1080)
Q Consensus 345 ~F~~ri~~Ay~E~~A~~rQ~~L 366 (1080)
+.+.-+++|..-+-++++|-++
T Consensus 507 niq~llkva~dnar~qekQiq~ 528 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQL 528 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445665555555555444
No 116
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=78.64 E-value=9.7 Score=49.21 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=10.6
Q ss_pred HHHhhHHhhhHHHHHHH
Q 001419 326 ERRLTELGRRTVEIFVL 342 (1080)
Q Consensus 326 e~~~~Elgrr~~~ifa~ 342 (1080)
.-...|+++|.|+-+..
T Consensus 781 a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 781 AVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33345778888875553
No 117
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=78.57 E-value=31 Score=38.11 Aligned_cols=16 Identities=13% Similarity=0.278 Sum_probs=7.7
Q ss_pred hHHHHHHHHhhHHHHH
Q 001419 335 RTVEIFVLAHIFSNKI 350 (1080)
Q Consensus 335 r~~~ifa~~k~F~~ri 350 (1080)
=+|=+|+|-+.|...|
T Consensus 15 Flil~~lL~kfl~kPi 30 (246)
T TIGR03321 15 FLILVWLLKRFLYRPI 30 (246)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3444555555554333
No 118
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=78.46 E-value=12 Score=40.37 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=2.1
Q ss_pred hhHHhhhHHHHHHHHhhHHHHHHHHH
Q 001419 329 LTELGRRTVEIFVLAHIFSNKIEVAY 354 (1080)
Q Consensus 329 ~~Elgrr~~~ifa~~k~F~~ri~~Ay 354 (1080)
+...|+=+|-++++..++-++|...|
T Consensus 33 L~~yGWyil~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 33 LSSYGWYILFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp -----------------------HHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888877776666667777776
No 119
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.40 E-value=2.4 Score=50.10 Aligned_cols=20 Identities=55% Similarity=0.727 Sum_probs=15.4
Q ss_pred CCccccccCCCCCCCCccccC
Q 001419 449 DVLEDVSDVSDSVDGGAEVLQ 469 (1080)
Q Consensus 449 d~~e~~sd~sd~~d~~~e~~~ 469 (1080)
-++-+|||++.+.|+ .+||-
T Consensus 68 ~~~~~v~dl~~~~~~-~~V~v 87 (533)
T KOG0556|consen 68 RELTDVSDLDESNDG-SEVLV 87 (533)
T ss_pred cceeehhhhhhhcCC-ceEEE
Confidence 455579999999999 66654
No 120
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=78.35 E-value=39 Score=36.32 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=27.6
Q ss_pred HHHhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 326 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREE 370 (1080)
Q Consensus 326 e~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~ 370 (1080)
.-.|+|-|.=++.|+---.+.-.++..-|...++.-.+..|..|.
T Consensus 76 Ti~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~ 120 (189)
T PF10211_consen 76 TIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQ 120 (189)
T ss_pred HhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888887666666543343345666677777766666666554
No 121
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=78.26 E-value=19 Score=39.12 Aligned_cols=21 Identities=33% Similarity=0.273 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001419 359 ALKRQEELIREEEAAWLAESE 379 (1080)
Q Consensus 359 A~~rQ~~Ll~E~E~e~~~e~e 379 (1080)
|+.++.+.|.|||+|+|+-.+
T Consensus 107 aE~rhrr~i~eLe~EKrkh~~ 127 (192)
T PF09727_consen 107 AEKRHRRTIQELEEEKRKHAE 127 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999887654
No 122
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=77.98 E-value=37 Score=36.94 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=12.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAYQEA 357 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~E~ 357 (1080)
.|=+|++.++|-.+|.....+.
T Consensus 64 liL~~lL~k~~~~pI~~vLe~R 85 (204)
T PRK09174 64 GLFYLFMSRVILPRIGGIIETR 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655665555443
No 123
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=76.69 E-value=18 Score=41.08 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=30.2
Q ss_pred CcccchhHHHHHHhhHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 316 DFNKDSIERDERRLTELGRRTVE-IFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWL 375 (1080)
Q Consensus 316 ~vs~dtve~ee~~~~Elgrr~~~-ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~ 375 (1080)
+|.+|..++|-.+-.|-+.|--- -.-...+ -||....+=+.+...+-|+++|+|.+..
T Consensus 185 d~pdd~e~rD~kry~e~KNr~~r~k~K~~Dn--aRl~~LV~~A~~~DPRIK~fkEqeK~~k 243 (379)
T COG5269 185 DYPDDMEERDRKRYSEAKNREKRAKLKNQDN--ARLKRLVQIAKKRDPRIKSFKEQEKEMK 243 (379)
T ss_pred hcCcchhhhhhHHHHHhhhHHHHHhhhchhH--HHHHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 36555555566555554433211 0000111 2455555566667777788888776543
No 124
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=76.57 E-value=27 Score=35.88 Aligned_cols=29 Identities=14% Similarity=0.010 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 356 EAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
-++-..|++++...+++++...++-++.+
T Consensus 28 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~ 56 (159)
T PRK09173 28 ARSLDARADRIKNELAEARRLREEAQQLL 56 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888776655544433
No 125
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=76.50 E-value=47 Score=34.79 Aligned_cols=26 Identities=27% Similarity=0.154 Sum_probs=14.6
Q ss_pred HhhhHHHHHHHHhhHHHHHHHHHHHH
Q 001419 332 LGRRTVEIFVLAHIFSNKIEVAYQEA 357 (1080)
Q Consensus 332 lgrr~~~ifa~~k~F~~ri~~Ay~E~ 357 (1080)
+-.=+|=+|+|-+.|...|.....+.
T Consensus 23 ~i~Flil~~iL~~~~~kpi~~~l~~R 48 (173)
T PRK13460 23 LVTFLVVVLVLKKFAWDVILKALDER 48 (173)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33445666666777755555554443
No 126
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=75.82 E-value=0.87 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhhh
Q 001419 394 KKKLAKQKRNNRKGKEKKREERSSMA 419 (1080)
Q Consensus 394 ~~k~akeee~~rk~~ek~~ee~~~~~ 419 (1080)
++++.+++++++++++..++|+++..
T Consensus 33 k~ee~~ee~r~k~ee~~~~~E~~~ee 58 (188)
T PF09756_consen 33 KKEEEREEERRKKEEEEEEEEEKKEE 58 (188)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444434444444433333
No 127
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.66 E-value=20 Score=38.86 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 001419 376 AESEQKAKRGAAEKEKKAKK 395 (1080)
Q Consensus 376 ~e~er~~kk~~k~kekk~~~ 395 (1080)
+-++|+++-+++++|++...
T Consensus 123 ~~~~R~~Rla~~~~E~~~~i 142 (227)
T KOG4691|consen 123 LHELRIARLAQEEREQEQRI 142 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554433
No 128
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=75.57 E-value=55 Score=33.67 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAYQ 355 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~ 355 (1080)
+|=+|+|.+.+...|.....
T Consensus 16 ~il~~iL~~f~~kpi~~~l~ 35 (159)
T PRK13461 16 IILLLILKHFFFDKIKAVID 35 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 44455555555444444433
No 129
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=75.50 E-value=52 Score=34.49 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=8.7
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAY 354 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay 354 (1080)
+|=+|++-+.+...|....
T Consensus 29 lil~~lL~~~l~kpi~~~l 47 (175)
T PRK14472 29 VIVLLILKKIAWGPILSAL 47 (175)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3445555555544444433
No 130
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=74.86 E-value=8.5 Score=48.71 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAYQEAV 358 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~E~~ 358 (1080)
|=+||+-.++|+ .||.|++
T Consensus 975 mEEFFaDi~tFr----naf~ea~ 993 (1102)
T KOG1924|consen 975 MEEFFADIRTFR----NAFLEAV 993 (1102)
T ss_pred HHHHHHHHHHHH----HHHHHHH
Confidence 345888888884 4555555
No 131
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=74.81 E-value=55 Score=34.37 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=14.3
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHH
Q 001419 331 ELGRRTVEIFVLAHIFSNKIEVAYQE 356 (1080)
Q Consensus 331 Elgrr~~~ifa~~k~F~~ri~~Ay~E 356 (1080)
.+-.=+|=+|+|-+.+...|.....+
T Consensus 24 ~iInFliL~~lL~~~l~~pi~~~l~~ 49 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLKDVMDK 49 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666665555544433
No 132
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.77 E-value=12 Score=40.91 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHH
Q 001419 360 LKRQEELIREEEAAW-LAESEQK 381 (1080)
Q Consensus 360 ~~rQ~~Ll~E~E~e~-~~e~er~ 381 (1080)
...|+++|+|..++. ++++|-+
T Consensus 112 keeQ~~rl~ekD~~sek~k~Elr 134 (216)
T KOG4031|consen 112 KEEQMKRLQEKDEASEKLKEELR 134 (216)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 357889999986544 4444443
No 133
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=74.62 E-value=9.1 Score=46.29 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001419 361 KRQEELIREEEAAWLAESEQK 381 (1080)
Q Consensus 361 ~rQ~~Ll~E~E~e~~~e~er~ 381 (1080)
..|+.+-++.|.++|+..+++
T Consensus 300 ~~q~~~~~~~er~~r~~~~~e 320 (460)
T KOG1363|consen 300 RLQMRRSEQDEREARLALEQE 320 (460)
T ss_pred HHhhcccchhHHHHHHHHHHh
Confidence 334444444444444444443
No 134
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.38 E-value=33 Score=41.35 Aligned_cols=6 Identities=33% Similarity=0.899 Sum_probs=4.2
Q ss_pred cccccc
Q 001419 787 YRNVKM 792 (1080)
Q Consensus 787 YrnAi~ 792 (1080)
|||.|+
T Consensus 384 fRNilf 389 (630)
T KOG0742|consen 384 FRNILF 389 (630)
T ss_pred hhheee
Confidence 677666
No 135
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.21 E-value=5.3 Score=48.20 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred hHHhhhHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 330 TELGRRTVEIFV---LAHIFSNKIEVAYQEAVALKRQEELIREEEA 372 (1080)
Q Consensus 330 ~Elgrr~~~ifa---~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 372 (1080)
+|++..-+..+. -+-.|. +..|+++.-++.+++-|++.++
T Consensus 453 ~Elk~~~~~~~~~~~~~id~~---~ikykdkkrEk~Rq~~l~~~~~ 495 (567)
T KOG0345|consen 453 PELKQYKIGEFFFPKPAIDFS---EIKYKDKKREKQRQQKLKVRKE 495 (567)
T ss_pred HHHhhhhccceeccCCCcchh---hhcccchHHHHHHHHHHHHHHH
Confidence 455555554331 133444 5567776655444444443333
No 136
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=74.16 E-value=57 Score=34.08 Aligned_cols=30 Identities=17% Similarity=0.033 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 356 EAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
.++-..|+.+.-.++.+++++++|-++-..
T Consensus 32 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~ 61 (161)
T COG0711 32 LKALDERQAKIADDLAEAERLKEEAQALLA 61 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888887777665544333
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=74.01 E-value=3.7 Score=52.26 Aligned_cols=14 Identities=57% Similarity=0.601 Sum_probs=8.2
Q ss_pred CCCCccccccCCCC
Q 001419 447 KPDVLEDVSDVSDS 460 (1080)
Q Consensus 447 k~d~~e~~sd~sd~ 460 (1080)
||-..++++|-+|+
T Consensus 782 ~p~~k~da~~~~ds 795 (975)
T KOG0112|consen 782 KPHRKGDASDESDS 795 (975)
T ss_pred CCCCcCcCccCccc
Confidence 66666666555443
No 138
>PHA00451 protein kinase
Probab=73.96 E-value=9.9 Score=43.23 Aligned_cols=11 Identities=55% Similarity=0.619 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 001419 363 QEELIREEEAA 373 (1080)
Q Consensus 363 Q~~Ll~E~E~e 373 (1080)
-++||.|.|+-
T Consensus 230 Pd~LiaEvEai 240 (362)
T PHA00451 230 PDELIAEVEAI 240 (362)
T ss_pred HHHHHHHHHHH
Confidence 34566666663
No 139
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=73.70 E-value=23 Score=40.66 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001419 358 VALKRQEELIREEEAAW 374 (1080)
Q Consensus 358 ~A~~rQ~~Ll~E~E~e~ 374 (1080)
..+.-.+++++|+|-++
T Consensus 141 tlEQAl~EV~EEeEL~~ 157 (291)
T PF06098_consen 141 TLEQALMEVMEEEELAA 157 (291)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 140
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=8.8 Score=41.87 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH--HHHHHHhhhhhhhHHHHHhhhhhhhhhhccCCCh
Q 001419 387 AEKEKKAKKKL--AKQKRNNRKGKEKKREERSSMALSDRLEDENPSD 431 (1080)
Q Consensus 387 k~kekk~~~k~--akeee~~rk~~ek~~ee~~~~~~e~~~~ee~~~~ 431 (1080)
.+.|+||+..+ |-+|+++.+|+|-+++|+++++.|-.|-=|+..|
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEEsRd 214 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEAEEKRKREREWQKNFEESRD 214 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666655 4455566677888888888888776655444333
No 141
>PTZ00234 variable surface protein Vir12; Provisional
Probab=72.84 E-value=4.8 Score=48.18 Aligned_cols=28 Identities=18% Similarity=0.555 Sum_probs=19.8
Q ss_pred cCCCCCCCCCCCCCcc--------cccccccCCCCC
Q 001419 771 LGPDLAPATHGYIPQS--------YRNVKMGNPVGS 798 (1080)
Q Consensus 771 ~g~dps~~~~sy~pqs--------YrnAi~g~~~~~ 798 (1080)
.+++|.+..|+.+--+ |||+|||-.+-+
T Consensus 340 ~~~~~~~~~~~~l~~~~d~~dSn~~rniim~~ailG 375 (433)
T PTZ00234 340 TAPEVNPDTSNFLEKTFGILKSEYFRHSIVGASIIG 375 (433)
T ss_pred CCCcCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3777777777766543 999999955433
No 142
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.65 E-value=25 Score=42.01 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=11.8
Q ss_pred eeehhhhhHHHhHHHHhhhhhcccccc
Q 001419 225 FFIEKEVTSTLVMDSLYSGLKALEGQS 251 (1080)
Q Consensus 225 FyVsKnvLAT~YMnSLLqgLy~Le~Fr 251 (1080)
|.|-+.-.|..||+=+ ++|..|.
T Consensus 229 FAv~tkk~~k~l~ke~----~DLs~F~ 251 (440)
T KOG2357|consen 229 FAVGTKKAAKKLFKEM----RDLSRFA 251 (440)
T ss_pred EeeehHHHHHHHHHHH----HHHHHHh
Confidence 3443444456666654 3555554
No 143
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=72.44 E-value=13 Score=36.33 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=14.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 339 IFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAES 378 (1080)
Q Consensus 339 ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~ 378 (1080)
+|++.++|...|... ...|+.++..++++.+...+
T Consensus 13 ~~~l~~~~~~pi~~~-----l~~R~~~I~~~~~~a~~~~~ 47 (132)
T PF00430_consen 13 FFLLNKFLYKPIKKF-----LDERKAKIQSELEEAEELKE 47 (132)
T ss_dssp HHHHHHHTHHHHHHH-----CS--S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHH
Confidence 334445554444433 34455555555555444433
No 144
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.06 E-value=23 Score=40.78 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001419 352 VAYQEAVALKRQEEL 366 (1080)
Q Consensus 352 ~Ay~E~~A~~rQ~~L 366 (1080)
+.++|.++.+|++-|
T Consensus 318 ~s~qet~eaKr~e~~ 332 (406)
T KOG3859|consen 318 FSLQETYEAKRNEFL 332 (406)
T ss_pred ccHHHHHHHHHHHHH
Confidence 347778877777644
No 145
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=71.79 E-value=20 Score=37.72 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001419 365 ELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 365 ~Ll~E~E~e~~~e~er~~kk 384 (1080)
.+++|+++|.|+..||+.=+
T Consensus 81 r~~EE~~EE~Rl~rere~~q 100 (157)
T PF15236_consen 81 RRREEEEEEERLAREREELQ 100 (157)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33445555556666655333
No 146
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=71.51 E-value=16 Score=39.47 Aligned_cols=9 Identities=44% Similarity=0.349 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 001419 351 EVAYQEAVA 359 (1080)
Q Consensus 351 ~~Ay~E~~A 359 (1080)
.++.+|++.
T Consensus 78 v~~rqEa~e 86 (190)
T PF06936_consen 78 VVRRQEAME 86 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444455543
No 147
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=70.89 E-value=31 Score=36.56 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHH
Q 001419 333 GRRTVEIFVLAHIFSNKIEVAYQEAV 358 (1080)
Q Consensus 333 grr~~~ifa~~k~F~~ri~~Ay~E~~ 358 (1080)
--=.|=+|++.++|-.+|.....+..
T Consensus 39 I~F~iL~~ll~k~l~~PI~~~l~~R~ 64 (181)
T PRK13454 39 VTLVAIYFVLTRVALPRIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566667776666766665553
No 148
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=70.33 E-value=4.8 Score=47.63 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=70.6
Q ss_pred cccCccCeEEEEeceeeeehhhhhH-HHhHHHHhhhhhccccccccccccceeccCCCCCCCceE--eeccc-----cch
Q 001419 209 MSREKTDAILKVVVKHFFIEKEVTS-TLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVH--VENDM-----FVL 280 (1080)
Q Consensus 209 DSkE~SDV~LkV~vkKFyVsKnvLA-T~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~--v~~d~-----fvl 280 (1080)
.-.+.+||+|...+++..+||-+|. +.||.|||+|+ -+++....|.+.=+|..-..+.. +.+.+ -+.
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL~QS~yf~smf~Gt-----w~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYLFQSEYFKSMFSGT-----WKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred hcCCCcceehhhccceeeeeeeeeeccHHHHHHhccc-----cChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc
Confidence 3568899999999999999999998 58999999994 66777666655443321111100 11111 012
Q ss_pred hHHH---HHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhHH-----HHHHhhHHhhhHHHHHH
Q 001419 281 VDDV---LLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIER-----DERRLTELGRRTVEIFV 341 (1080)
Q Consensus 281 ~~Df---q~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve~-----ee~~~~Elgrr~~~ifa 341 (1080)
.+|+ ++++=.++|+-+=- .|+.--.+. ++..|+-. .-|.+...+.+|+++|-
T Consensus 140 l~dv~gvlAaA~~lqldgl~q---rC~evMie~------lspkta~~yYea~ckYgle~vk~kc~ewl~ 199 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDGLIQ---RCGEVMIET------LSPKTACGYYEAACKYGLESVKKKCLEWLL 199 (488)
T ss_pred HHHHHHHHHHHHHHHHhhHHH---HHHHHHHHh------cChhhhhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3343 44555555555532 455444444 44444431 34556666777777765
No 149
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=69.75 E-value=9.8 Score=46.00 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=8.5
Q ss_pred HHHHhhhhhhhHHHH
Q 001419 400 QKRNNRKGKEKKREE 414 (1080)
Q Consensus 400 eee~~rk~~ek~~ee 414 (1080)
|||+.+||+|+++.|
T Consensus 430 eeer~~keee~arre 444 (708)
T KOG3654|consen 430 EEERAPKEEEVARRE 444 (708)
T ss_pred HhhhcchhhhhhHHH
Confidence 444566666666554
No 150
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=68.66 E-value=97 Score=32.04 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=11.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAYQEA 357 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~E~ 357 (1080)
+|=+|+|-+.|...|..+..+.
T Consensus 19 lil~~lL~~fl~kpi~~~l~~R 40 (164)
T PRK14473 19 LLLIFLLRTFLYRPVLNLLNER 40 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666655555554443
No 151
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=67.95 E-value=98 Score=32.42 Aligned_cols=23 Identities=13% Similarity=-0.103 Sum_probs=13.2
Q ss_pred HHhhhHHHHHHHHhhHHHHHHHH
Q 001419 331 ELGRRTVEIFVLAHIFSNKIEVA 353 (1080)
Q Consensus 331 Elgrr~~~ifa~~k~F~~ri~~A 353 (1080)
.+-.=+|=||+|-+.+..-|..+
T Consensus 25 ~iinflIl~~lL~~fl~kpI~~~ 47 (174)
T PRK07352 25 NLINLAIVIGLLYYFGRGFLGKI 47 (174)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 35556666777666664444443
No 152
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=67.94 E-value=17 Score=43.04 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=13.7
Q ss_pred HHHHhhHHhhhHHHHHHHHhhH
Q 001419 325 DERRLTELGRRTVEIFVLAHIF 346 (1080)
Q Consensus 325 ee~~~~Elgrr~~~ifa~~k~F 346 (1080)
-++++.--||-+-++-+ -.+|
T Consensus 260 LdkRlaadgrglq~v~I-NdnF 280 (506)
T KOG2441|consen 260 LDKRLAADGRGLQDVHI-NDNF 280 (506)
T ss_pred chhhhhhccCCccccee-cccH
Confidence 46777778887766644 4444
No 153
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=67.82 E-value=55 Score=35.54 Aligned_cols=12 Identities=33% Similarity=0.141 Sum_probs=5.9
Q ss_pred HHHHHHHhcCCC
Q 001419 285 LLLLERAALEPL 296 (1080)
Q Consensus 285 q~~LEr~~LEpl 296 (1080)
..+|-+|.-.|+
T Consensus 62 v~lL~k~l~kPi 73 (205)
T PRK06231 62 LLLGIFLFWKPT 73 (205)
T ss_pred HHHHHHHHHHHH
Confidence 444444455555
No 154
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=66.15 E-value=28 Score=39.40 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=57.0
Q ss_pred chhhhhhhhcccccccccccccccccccCCCCcccccccc-CCCCCCCcccCccCCccccccCCcccccCccccccCCCC
Q 001419 925 HLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFS-FPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSV 1003 (1080)
Q Consensus 925 HLDIINDLL~eeq~~g~~~~~~~~~~~~~~~~~~f~~~fs-~~g~~~~~~d~~s~~~~~rf~~t~~y~d~g~~~~y~~~~ 1003 (1080)
-+.||=|||.|--.-|++.---..|.--.-+|-.|-.+|- .||+-+-.+--| .+--.=--..+.++|+.-+
T Consensus 183 ~i~~il~~i~e~pikgsa~py~p~fyd~t~dyggf~M~f~d~pg~pgpapqrg--------gqgpp~~~~sdlmay~r~G 254 (390)
T KOG2192|consen 183 CIKIILDLISESPIKGSAQPYDPNFYDETYDYGGFTMMFDDRPGRPGPAPQRG--------GQGPPPPRGSDLMAYDRRG 254 (390)
T ss_pred HHHHHHHHhhcCCcCCcCCcCCccccCcccccCCceeecCCCCCCCCCCCCCC--------CCCCCCCCccccceeccCC
Confidence 3677788888877777765433333333345666665554 444433211111 1111111122456666554
Q ss_pred ---CcccccccccCccCCCCCCCCccCCCCCCCCCCCC
Q 001419 1004 ---GHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPG 1038 (1080)
Q Consensus 1004 ---~~~~~~r~~~~~~~~~~y~ng~~D~~~~~~W~~~~ 1038 (1080)
.-|+++-+|+++ --.+|-+|...|+-|+|+.
T Consensus 255 rpG~rydg~vdFs~d----etw~saidtw~~SewqmaY 288 (390)
T KOG2192|consen 255 RPGDRYDGMVDFSAD----ETWPSAIDTWSPSEWQMAY 288 (390)
T ss_pred CCCcccccccccccc----ccCCCcCCCcCcccccccc
Confidence 336666666554 3358889999999999953
No 155
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=65.94 E-value=10 Score=47.60 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHhcCC
Q 001419 281 VDDVLLLLERAALEP 295 (1080)
Q Consensus 281 ~~Dfq~~LEr~~LEp 295 (1080)
..-|..+|.++.+.+
T Consensus 451 ~~~l~~~l~ILGl~~ 465 (651)
T PTZ00399 451 AQYVTKILSIFGLVE 465 (651)
T ss_pred HHHHHHHHhcccCCc
Confidence 344666677777743
No 156
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=65.85 E-value=30 Score=37.94 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhhhh
Q 001419 351 EVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKR-NNRKGKEKKREERSSMALS 421 (1080)
Q Consensus 351 ~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~akeee-~~rk~~ek~~ee~~~~~~e 421 (1080)
.+.|.-.||-=++..|..|.|......+=+..+-.+++-|.+-.+..+|.|- +.|-+++++-||++-+.+-
T Consensus 166 qtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei 237 (259)
T KOG4001|consen 166 QTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEI 237 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4567778888888888887766543333222222334444444444444433 3334444445555444433
No 157
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.72 E-value=33 Score=44.12 Aligned_cols=14 Identities=29% Similarity=0.152 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 001419 362 RQEELIREEEAAWL 375 (1080)
Q Consensus 362 rQ~~Ll~E~E~e~~ 375 (1080)
.-++||+++|++.+
T Consensus 517 ~~~~li~~l~~~~~ 530 (782)
T PRK00409 517 KLNELIASLEELER 530 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665443
No 158
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=65.24 E-value=1.3e+02 Score=30.24 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=8.9
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 001419 339 IFVLAHIFSNKIEVAYQE 356 (1080)
Q Consensus 339 ifa~~k~F~~ri~~Ay~E 356 (1080)
+|+|-+.|...|...+.+
T Consensus 9 ~~il~~~~~~pi~~~l~~ 26 (147)
T TIGR01144 9 VWFCMKYVWPPLAKAIET 26 (147)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544433
No 159
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=64.60 E-value=86 Score=35.94 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=7.2
Q ss_pred hhhHHHHHhhhhhhhh
Q 001419 408 KEKKREERSSMALSDR 423 (1080)
Q Consensus 408 ~ek~~ee~~~~~~e~~ 423 (1080)
..|+..|+..++.++|
T Consensus 176 ~~k~~AEa~gra~~eR 191 (276)
T PF12037_consen 176 RAKAEAEAEGRAKEER 191 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 160
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=64.54 E-value=13 Score=45.17 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.8
Q ss_pred hhHHHHHH
Q 001419 334 RRTVEIFV 341 (1080)
Q Consensus 334 rr~~~ifa 341 (1080)
|-|+-||.
T Consensus 372 kvg~gfff 379 (708)
T KOG3654|consen 372 KVGLGFFF 379 (708)
T ss_pred ccceeeee
Confidence 33445554
No 161
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=64.38 E-value=87 Score=31.31 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=7.9
Q ss_pred HHHHHhhHHHHHHHHHH
Q 001419 339 IFVLAHIFSNKIEVAYQ 355 (1080)
Q Consensus 339 ifa~~k~F~~ri~~Ay~ 355 (1080)
+|+|.++|-..|.....
T Consensus 19 ~~ll~~~l~~pi~~~l~ 35 (140)
T PRK07353 19 TFILNALFYKPVGKVVE 35 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555544444433
No 162
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=64.19 E-value=11 Score=46.21 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001419 346 FSNKIEVAYQEAVALKRQEE 365 (1080)
Q Consensus 346 F~~ri~~Ay~E~~A~~rQ~~ 365 (1080)
++|||+.|-+++...-|++|
T Consensus 351 ~~qr~lkas~dar~rar~ek 370 (645)
T KOG0681|consen 351 KKQRILKASTDARLRARVEK 370 (645)
T ss_pred HHHHHHHhhhhhhccccccc
Confidence 55788888777766666666
No 163
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.13 E-value=36 Score=38.80 Aligned_cols=7 Identities=43% Similarity=0.700 Sum_probs=3.2
Q ss_pred CCCcccc
Q 001419 507 PNGVTEK 513 (1080)
Q Consensus 507 ~n~~~~k 513 (1080)
+||++-+
T Consensus 218 ~DG~Tl~ 224 (290)
T KOG2689|consen 218 PDGQTLT 224 (290)
T ss_pred CCCCeee
Confidence 4554443
No 164
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=63.92 E-value=12 Score=45.35 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=9.9
Q ss_pred CCeEEEEEEEeccC
Q 001419 109 CNHLSLFLCVANHD 122 (1080)
Q Consensus 109 ~dyLSLYLec~~~e 122 (1080)
+.+|+||-|+....
T Consensus 177 ~~~l~vyr~~~~~~ 190 (591)
T KOG2505|consen 177 GSVLSVYRCILHVG 190 (591)
T ss_pred CceEEEeeeccccc
Confidence 47899997775543
No 165
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=63.87 E-value=24 Score=42.77 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.5
Q ss_pred cCCCCC
Q 001419 293 LEPLPP 298 (1080)
Q Consensus 293 LEplp~ 298 (1080)
.+..|+
T Consensus 255 ~~~fP~ 260 (460)
T KOG1363|consen 255 SERFPL 260 (460)
T ss_pred cccCch
Confidence 344443
No 166
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=63.58 E-value=1.4e+02 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAYQEA 357 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~E~ 357 (1080)
+|=+|++-+++...|.....+.
T Consensus 15 lil~~il~~~~~~pi~~~l~~R 36 (156)
T PRK05759 15 LILVWFIMKFVWPPIMKALEER 36 (156)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 4555666666655555554433
No 167
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=63.53 E-value=9 Score=41.57 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=5.5
Q ss_pred CeEEEEEEEEEE
Q 001419 181 DTLIIKAQVQVI 192 (1080)
Q Consensus 181 DsLtIEc~VkVi 192 (1080)
|.+.|...+.|.
T Consensus 3 ~~~~~~t~lIi~ 14 (196)
T PF08229_consen 3 DSCSFGTGLIIC 14 (196)
T ss_pred CccceeeeeehH
Confidence 344555555333
No 168
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=63.52 E-value=21 Score=44.03 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 340 FVLAHIFSNKIEVAYQEAVALKRQEELIREEEA 372 (1080)
Q Consensus 340 fa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 372 (1080)
++.-+++..++..-|--.=-..+|.++||+++.
T Consensus 408 iA~~R~es~k~~~ry~~~sDvr~QLrflEqldk 440 (563)
T KOG2341|consen 408 IAEHRVESEKSRERYEIISDVRRQLRFLEQLDK 440 (563)
T ss_pred HHHHHHHHhhccchheehHHHHHHHHHHHHHHH
Confidence 333444443333334333334455555555543
No 169
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=63.46 E-value=6.5 Score=46.77 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=5.9
Q ss_pred hhhhccccccccc
Q 001419 242 SGLKALEGQSKSK 254 (1080)
Q Consensus 242 qgLy~Le~Fres~ 254 (1080)
++||-.+.++..|
T Consensus 112 ~~~h~~~t~~s~f 124 (506)
T KOG2507|consen 112 LGLHIQETTASIF 124 (506)
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444433
No 170
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=62.73 E-value=1.4e+02 Score=31.53 Aligned_cols=19 Identities=37% Similarity=0.247 Sum_probs=7.4
Q ss_pred HHHHHhhhhhhhhhhccCC
Q 001419 411 KREERSSMALSDRLEDENP 429 (1080)
Q Consensus 411 ~~ee~~~~~~e~~~~ee~~ 429 (1080)
+++|+.++..+.++..+++
T Consensus 99 ~aeEr~~~~Eer~~~~eer 117 (149)
T PF15346_consen 99 LAEERLRMEEERRRELEER 117 (149)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444433333444333
No 171
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.88 E-value=24 Score=36.16 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 001419 358 VALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNN 404 (1080)
Q Consensus 358 ~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~~ 404 (1080)
+.-+-|+.|-.+.|+-+...+.+.-.+.+.+|+++.+.|++|.++|-
T Consensus 83 ~~TkAQ~ALk~q~E~~K~~rk~~~k~~re~~k~~kf~lkq~K~k~KH 129 (132)
T PF11208_consen 83 ISTKAQQALKLQREQRKKERKKRSKEQREAEKERKFELKQQKRKEKH 129 (132)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455666666655544333322222222345555555555555543
No 172
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=61.84 E-value=6.6 Score=42.57 Aligned_cols=7 Identities=0% Similarity=-0.310 Sum_probs=3.4
Q ss_pred CCccccc
Q 001419 303 GPQNRTK 309 (1080)
Q Consensus 303 ~~q~~~~ 309 (1080)
|....|.
T Consensus 116 ~~~~~~~ 122 (196)
T PF08229_consen 116 VSSGNWG 122 (196)
T ss_pred cCCCCcc
Confidence 4444454
No 173
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=61.76 E-value=15 Score=39.43 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 001419 380 QKAKRGA 386 (1080)
Q Consensus 380 r~~kk~~ 386 (1080)
+|+|+.+
T Consensus 15 kkakka~ 21 (177)
T PF09831_consen 15 KKAKKAK 21 (177)
T ss_pred HHHHHHH
Confidence 3444443
No 174
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=61.38 E-value=1.2e+02 Score=32.11 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001419 350 IEVAYQEAVALKRQEELIREEEA 372 (1080)
Q Consensus 350 i~~Ay~E~~A~~rQ~~Ll~E~E~ 372 (1080)
|...+=-+++..+=...|++.++
T Consensus 22 ILy~ll~kf~~ppI~~iLe~R~~ 44 (155)
T PRK06569 22 LLYIFVYKFITPKAEEIFNNRQT 44 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445556666666666666554
No 175
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=61.34 E-value=51 Score=39.97 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001419 364 EELIREEEAAWLAES 378 (1080)
Q Consensus 364 ~~Ll~E~E~e~~~e~ 378 (1080)
+.++||.|-.+.+|+
T Consensus 535 md~lrerelreslek 549 (641)
T KOG3915|consen 535 MDFLRERELRESLEK 549 (641)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555554444443
No 176
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.29 E-value=16 Score=41.49 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001419 357 AVALKRQEELIRE 369 (1080)
Q Consensus 357 ~~A~~rQ~~Ll~E 369 (1080)
++.++.-+++..|
T Consensus 99 kik~k~~k~~e~e 111 (290)
T KOG2689|consen 99 KIKQKQIKREELE 111 (290)
T ss_pred HhcchhHHHHHHH
Confidence 3333433333333
No 177
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=61.20 E-value=92 Score=32.94 Aligned_cols=11 Identities=18% Similarity=-0.167 Sum_probs=4.4
Q ss_pred HHHHHHhcCCC
Q 001419 286 LLLERAALEPL 296 (1080)
Q Consensus 286 ~~LEr~~LEpl 296 (1080)
.+|-+|.-.|+
T Consensus 39 ~lL~~fl~kPI 49 (184)
T CHL00019 39 GVLIYFGKGVL 49 (184)
T ss_pred HHHHHHhHhHH
Confidence 33333333444
No 178
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=60.84 E-value=27 Score=34.72 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 001419 388 EKEKKAKKKLAKQKRNNRKGK 408 (1080)
Q Consensus 388 ~kekk~~~k~akeee~~rk~~ 408 (1080)
+|-|-++.||||+|-...-++
T Consensus 26 Rk~K~~RLKQAKeEA~~Eie~ 46 (108)
T KOG1772|consen 26 RKRKLRRLKQAKEEAEKEIEE 46 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665444333
No 179
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=60.83 E-value=1.1e+02 Score=31.36 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=6.0
Q ss_pred HHHHHhhHHHHHHHH
Q 001419 339 IFVLAHIFSNKIEVA 353 (1080)
Q Consensus 339 ifa~~k~F~~ri~~A 353 (1080)
+|++.+.|-..|...
T Consensus 21 ~~~l~kfl~kPi~~~ 35 (141)
T PRK08476 21 IVILNSWLYKPLLKF 35 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444344333
No 180
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=60.61 E-value=1.2e+02 Score=30.94 Aligned_cols=10 Identities=20% Similarity=0.188 Sum_probs=7.5
Q ss_pred HhhhHHHHHH
Q 001419 332 LGRRTVEIFV 341 (1080)
Q Consensus 332 lgrr~~~ifa 341 (1080)
=|||||..+.
T Consensus 8 RnRRmFG~Ll 17 (131)
T PF04696_consen 8 RNRRMFGGLL 17 (131)
T ss_pred hhhhHHHHHH
Confidence 3889998654
No 181
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.42 E-value=95 Score=34.72 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=13.9
Q ss_pred HHHhhHHhhhHHHHHHHHhhH
Q 001419 326 ERRLTELGRRTVEIFVLAHIF 346 (1080)
Q Consensus 326 e~~~~Elgrr~~~ifa~~k~F 346 (1080)
|+...||-.||.+|=--.+.-
T Consensus 4 Er~k~Ele~rL~q~eee~~~a 24 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRA 24 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888876644444
No 182
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=60.02 E-value=1.1e+02 Score=31.76 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=4.7
Q ss_pred HHHHHHHhcCCC
Q 001419 285 LLLLERAALEPL 296 (1080)
Q Consensus 285 q~~LEr~~LEpl 296 (1080)
..+|-++...|+
T Consensus 22 ~~ll~~~l~~pi 33 (164)
T PRK14471 22 LLLLAKFAWKPI 33 (164)
T ss_pred HHHHHHHhHHHH
Confidence 333444443333
No 183
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.90 E-value=75 Score=35.25 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=12.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 001419 343 AHIFSNKIEVAYQEAVALKRQEE 365 (1080)
Q Consensus 343 ~k~F~~ri~~Ay~E~~A~~rQ~~ 365 (1080)
+-++ .|+....++-+.+..+++
T Consensus 110 ~lvI-~R~~~ll~~l~~l~~~~~ 131 (216)
T KOG1962|consen 110 SLVI-RRLHTLLRELATLRANEK 131 (216)
T ss_pred HHHH-HHHHHHHHHHHHHHhhHH
Confidence 4444 566666666665555533
No 184
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.78 E-value=68 Score=38.72 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=9.2
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAY 354 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay 354 (1080)
+|=+|++-+.|...|....
T Consensus 12 lIl~~lL~kfl~~Pi~~~l 30 (445)
T PRK13428 12 AVIVFLVWRFVVPPVRRLM 30 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444443
No 185
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.17 E-value=1.1e+02 Score=39.52 Aligned_cols=14 Identities=0% Similarity=0.140 Sum_probs=7.4
Q ss_pred EEeCCeEEEEEEEe
Q 001419 90 FEVGGYKWYILIYP 103 (1080)
Q Consensus 90 FevGG~~WRIlVYP 103 (1080)
+...+-.|.|-+..
T Consensus 184 it~r~~r~vipvk~ 197 (771)
T TIGR01069 184 VTIRNGRYVLPLKS 197 (771)
T ss_pred EEEECCEEEEEeeH
Confidence 44445566665543
No 186
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=58.85 E-value=55 Score=40.54 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.3
Q ss_pred hhccCCChhhh
Q 001419 424 LEDENPSDEKK 434 (1080)
Q Consensus 424 ~~ee~~~~~~~ 434 (1080)
+.++++.++-+
T Consensus 681 ~ve~eRr~eqe 691 (940)
T KOG4661|consen 681 KVEEERRDEQE 691 (940)
T ss_pred HHHHhhcchhh
Confidence 45555544443
No 187
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=58.63 E-value=21 Score=46.63 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=12.0
Q ss_pred cccccCCchhhhhhhhc
Q 001419 918 VLVDEFPHLDIINDLLD 934 (1080)
Q Consensus 918 ~v~dEFPHLDIINDLL~ 934 (1080)
+||+-|-.|+..|++..
T Consensus 1279 ~vg~lf~~ls~v~sv~~ 1295 (1330)
T KOG0949|consen 1279 GVGELFKSLSVVNSVVL 1295 (1330)
T ss_pred ccchhhhhhhcchHHHH
Confidence 67777777777777543
No 188
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=58.55 E-value=14 Score=47.30 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=61.8
Q ss_pred cCccCeEEEEec-eeeeehhhhhH--HHhHHHHhhhhhcccccccc----------ccccceecc-CCCCCCCceEeecc
Q 001419 211 REKTDAILKVVV-KHFFIEKEVTS--TLVMDSLYSGLKALEGQSKS----------KKTKAKLLD-AEDTPPPIVHVEND 276 (1080)
Q Consensus 211 kE~SDV~LkV~v-kKFyVsKnvLA--T~YMnSLLqgLy~Le~Fres----------~Ks~i~l~D-tDe~p~~~v~v~~d 276 (1080)
++.-||+++..+ |-|-+||-+|. --||.+||+-+.. +.-.=+ .+-.+...| +|+. +.+...
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~-E~sS~t~~~~p~~~e~m~ivLdylYs~d~~----~~~k~~ 782 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWM-ESSSITVNLSPLTVEHMSIVLDYLYSDDKV----ELFKDL 782 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHh-hhccceeecCcchHHHHHHHHHHHHccchH----HHHhcc
Confidence 344464444445 66999999995 3899999876432 111100 011111222 1110 000000
Q ss_pred ccc-hhHHHHHHHHHHhcCCCCCCCCCCCccccccCCCCCCcccchhH----H-HHHHhhHHhhhHHHHHH
Q 001419 277 MFV-LVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE----R-DERRLTELGRRTVEIFV 341 (1080)
Q Consensus 277 ~fv-l~~Dfq~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve----~-ee~~~~Elgrr~~~ifa 341 (1080)
.-+ +.-.++..+|-|.++.|+. .|.|.+++. .+--+.. - -+|+|-||..+||+|..
T Consensus 783 ~~~dF~~~il~iaDqlli~~Lk~---Ice~~ll~k------l~lk~~~~llefaamY~ak~L~~~C~dfic 844 (1267)
T KOG0783|consen 783 KESDFMFEILSIADQLLILELKS---ICEQSLLRK------LNLKTLPTLLEFAAMYHAKELYSRCIDFIC 844 (1267)
T ss_pred chhhhhHHHHHHHHHHHHHHHHH---HHHHHHHhH------hcccchHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 000 0112355666666666665 577776665 4433332 2 69999999999999876
No 189
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.49 E-value=44 Score=43.06 Aligned_cols=14 Identities=0% Similarity=0.195 Sum_probs=6.7
Q ss_pred EEeCCeEEEEEEEe
Q 001419 90 FEVGGYKWYILIYP 103 (1080)
Q Consensus 90 FevGG~~WRIlVYP 103 (1080)
+...+-.+.|-+..
T Consensus 189 it~r~~r~~i~vk~ 202 (782)
T PRK00409 189 ITIRNDRYVLPVKA 202 (782)
T ss_pred EEEECCEEEEEech
Confidence 33445555555543
No 190
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=58.43 E-value=53 Score=34.77 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=10.0
Q ss_pred HHHHHHHHHH-HHHHHHHHhhHHHH
Q 001419 367 IREEEAAWLA-ESEQKAKRGAAEKE 390 (1080)
Q Consensus 367 l~E~E~e~~~-e~er~~kk~~k~ke 390 (1080)
++++|.+.++ +++.++.|.+++++
T Consensus 73 ~k~~E~err~~EE~~EE~Rl~rere 97 (157)
T PF15236_consen 73 QKQEEEERRRREEEEEEERLARERE 97 (157)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333 44444445444433
No 191
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=57.85 E-value=29 Score=36.70 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHhhHHhhhHHHHHHHHhhH
Q 001419 325 DERRLTELGRRTVEIFVLAHIF 346 (1080)
Q Consensus 325 ee~~~~Elgrr~~~ifa~~k~F 346 (1080)
-++|+.=-||.+.+.-+ -..|
T Consensus 87 LDKRlaadgr~l~~~~I-Nd~F 107 (158)
T PF02731_consen 87 LDKRLAADGRGLQDVEI-NDKF 107 (158)
T ss_pred HHHHHhhcccccCCccc-cHHH
Confidence 35666666888777665 4555
No 192
>COG4499 Predicted membrane protein [Function unknown]
Probab=57.78 E-value=11 Score=44.45 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 001419 361 KRQEELIREEEA 372 (1080)
Q Consensus 361 ~rQ~~Ll~E~E~ 372 (1080)
+..++||.|.++
T Consensus 365 ~~r~e~lk~~n~ 376 (434)
T COG4499 365 DKRQELLKEYNK 376 (434)
T ss_pred hHHHHHHHHHHH
Confidence 344555555544
No 193
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.87 E-value=96 Score=40.09 Aligned_cols=12 Identities=25% Similarity=0.031 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 001419 363 QEELIREEEAAW 374 (1080)
Q Consensus 363 Q~~Ll~E~E~e~ 374 (1080)
-++||+++|++.
T Consensus 513 ~~~li~~L~~~~ 524 (771)
T TIGR01069 513 INVLIEKLSALE 524 (771)
T ss_pred HHHHHHHHHHHH
Confidence 345555555433
No 194
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=56.77 E-value=63 Score=37.80 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=5.4
Q ss_pred CCCCCCCCCC
Q 001419 553 SPSRGKNQRG 562 (1080)
Q Consensus 553 s~~rg~~~~~ 562 (1080)
=-++||-|.-
T Consensus 201 e~~mtKeQqE 210 (361)
T KOG3634|consen 201 EMGMTKEQQE 210 (361)
T ss_pred HhcccHHHHH
Confidence 3456666544
No 195
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=56.66 E-value=29 Score=40.65 Aligned_cols=7 Identities=43% Similarity=0.392 Sum_probs=3.0
Q ss_pred EEEEEec
Q 001419 114 LFLCVAN 120 (1080)
Q Consensus 114 LYLec~~ 120 (1080)
++|.++.
T Consensus 92 lslki~R 98 (405)
T KOG2963|consen 92 LSLKIAR 98 (405)
T ss_pred eeEEEEe
Confidence 4444443
No 196
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.27 E-value=59 Score=37.74 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001419 375 LAESEQKAK 383 (1080)
Q Consensus 375 ~~e~er~~k 383 (1080)
+++.|++++
T Consensus 150 ~~~~E~~~~ 158 (309)
T TIGR00570 150 ALEFEKEEE 158 (309)
T ss_pred HHHHHHHHH
Confidence 333333333
No 197
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=54.78 E-value=85 Score=32.77 Aligned_cols=6 Identities=50% Similarity=0.750 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001419 379 EQKAKR 384 (1080)
Q Consensus 379 er~~kk 384 (1080)
|+=+|+
T Consensus 81 ekTaKk 86 (142)
T PF06658_consen 81 EKTAKK 86 (142)
T ss_pred HHHHHH
Confidence 333333
No 198
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=54.61 E-value=71 Score=34.08 Aligned_cols=6 Identities=67% Similarity=0.889 Sum_probs=2.8
Q ss_pred hHHhhh
Q 001419 330 TELGRR 335 (1080)
Q Consensus 330 ~Elgrr 335 (1080)
.||.|+
T Consensus 27 ~el~~~ 32 (170)
T PF14943_consen 27 KELKRR 32 (170)
T ss_pred HHHHHH
Confidence 445444
No 199
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=54.21 E-value=22 Score=43.96 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcCCCC
Q 001419 282 DDVLLLLERAALEPLP 297 (1080)
Q Consensus 282 ~Dfq~~LEr~~LEplp 297 (1080)
-++-+|++-+.|-.+|
T Consensus 494 l~~~afa~s~Gl~~~p 509 (758)
T KOG0343|consen 494 LDIEAFADSLGLPGTP 509 (758)
T ss_pred ccHHHHHHhcCCCCCc
Confidence 4556666666555554
No 200
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=53.98 E-value=10 Score=46.34 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 001419 391 KKAKKKLAKQKRNNRKGKE 409 (1080)
Q Consensus 391 kk~~~k~akeee~~rk~~e 409 (1080)
||.++|+.|+++|++++++
T Consensus 413 Kk~~kK~kK~~~k~~~~~~ 431 (517)
T PF12569_consen 413 KKAKKKAKKAAKKAKKEEA 431 (517)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 4444444444444444333
No 201
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=53.23 E-value=35 Score=42.35 Aligned_cols=6 Identities=67% Similarity=0.745 Sum_probs=2.6
Q ss_pred CCCccc
Q 001419 462 DGGAEV 467 (1080)
Q Consensus 462 d~~~e~ 467 (1080)
||..|+
T Consensus 735 ~g~k~~ 740 (758)
T KOG0343|consen 735 DGIKEV 740 (758)
T ss_pred cccccc
Confidence 344444
No 202
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=53.17 E-value=17 Score=40.18 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=6.8
Q ss_pred CCCCCCccc
Q 001419 445 PEKPDVLED 453 (1080)
Q Consensus 445 ~~k~d~~e~ 453 (1080)
+++|-|-||
T Consensus 156 am~PmTkEE 164 (225)
T PF10500_consen 156 AMAPMTKEE 164 (225)
T ss_pred hcCCCCHHH
Confidence 467888887
No 203
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=53.10 E-value=1.2e+02 Score=35.27 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCCccccccCCCCCCCCccccCCCCCCCCCCCCCcCCCCcccCCC
Q 001419 448 PDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPP 492 (1080)
Q Consensus 448 ~d~~e~~sd~sd~~d~~~e~~~~d~edr~~s~v~~~~d~~e~~~~ 492 (1080)
+.-+|+.+.+.-+ .+--..+.+|.++-..+|.+-.-|+..+
T Consensus 343 ~~~~ee~tespa~----g~eptstp~a~es~t~~~t~~~~~~p~~ 383 (410)
T KOG4715|consen 343 ETHLEESTESPAN----GEEPTSTPEAKESGTTGTTTENKEKPEE 383 (410)
T ss_pred cccccccccCCCC----CCCCCCCccccccccccCccccccCcch
Confidence 3445555544433 2334456788888888998876665443
No 204
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=53.02 E-value=17 Score=39.87 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001419 362 RQEELIREEEAAWLA 376 (1080)
Q Consensus 362 rQ~~Ll~E~E~e~~~ 376 (1080)
+|.+.|+|.++++++
T Consensus 120 ~~~~~i~ekD~~e~~ 134 (225)
T PF01086_consen 120 ERDKRIEEKDAEEEE 134 (225)
T ss_dssp HHTTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445444444333
No 205
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.86 E-value=1e+02 Score=37.21 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=6.9
Q ss_pred HHHHHHHHhcCCCC
Q 001419 284 VLLLLERAALEPLP 297 (1080)
Q Consensus 284 fq~~LEr~~LEplp 297 (1080)
++.++-|....|-|
T Consensus 120 ~L~A~~r~g~~p~~ 133 (420)
T COG4942 120 QLAALQRSGRNPPP 133 (420)
T ss_pred HHHHHHhccCCCCc
Confidence 34455555555533
No 206
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.28 E-value=3.1e+02 Score=30.22 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=20.2
Q ss_pred HhhHHhhhHHHHHHHHhhHHHHHHHHHH
Q 001419 328 RLTELGRRTVEIFVLAHIFSNKIEVAYQ 355 (1080)
Q Consensus 328 ~~~Elgrr~~~ifa~~k~F~~ri~~Ay~ 355 (1080)
++.++.-++.++...-..++.+|..+..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777767777777877766
No 207
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.25 E-value=1.3e+02 Score=33.85 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.4
Q ss_pred ccccCC
Q 001419 549 QNQKSP 554 (1080)
Q Consensus 549 ~~~~s~ 554 (1080)
++.+.|
T Consensus 224 ~~~~~~ 229 (233)
T KOG4739|consen 224 RVHKLP 229 (233)
T ss_pred hhcccc
Confidence 444433
No 208
>PLN02316 synthase/transferase
Probab=49.56 E-value=38 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=15.5
Q ss_pred cCCCCcccCCCccceeeecCccCCCccc
Q 001419 520 DDSSSTCSTDSVPSVVMYGPYKGNSLAN 547 (1080)
Q Consensus 520 ~~~sstcs~ds~~~~~~~g~~~~~~~~~ 547 (1080)
=+-++++.+.+ +.|.+.|.| |+|++
T Consensus 335 YN~~~~~L~~~-~~v~i~gg~--N~W~~ 359 (1036)
T PLN02316 335 YNRSSGPLAHS-TEIWIHGGY--NNWID 359 (1036)
T ss_pred ECCCCCCCCCC-CcEEEEEeE--cCCCC
Confidence 34455666663 668888854 66654
No 209
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.46 E-value=1.7e+02 Score=35.85 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhh
Q 001419 387 AEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDR 423 (1080)
Q Consensus 387 k~kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~ 423 (1080)
+|||.+.++=++.++|=.|.++|+++|..+.+..-+|
T Consensus 485 rEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leK 521 (527)
T PF15066_consen 485 REKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6677777777799999888888888887666655443
No 210
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=49.40 E-value=1.2e+02 Score=36.53 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.5
Q ss_pred cccccc
Q 001419 169 ELSKVS 174 (1080)
Q Consensus 169 swddLe 174 (1080)
.|.++.
T Consensus 188 dwndvl 193 (672)
T KOG4722|consen 188 DWNDVL 193 (672)
T ss_pred chhhHH
Confidence 344443
No 211
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=49.32 E-value=74 Score=34.48 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---HH-----HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhc
Q 001419 359 ALKRQEELIREEEAAWLAESEQKAKRGA---AE-----KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 426 (1080)
Q Consensus 359 A~~rQ~~Ll~E~E~e~~~e~er~~kk~~---k~-----kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~~~e 426 (1080)
...++..+++|+=+++-...-+.-+..+ .- |.-+..+...|..|...|.-++..|-++.++.|+.|.+
T Consensus 116 ~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk 191 (192)
T COG5374 116 VVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191 (192)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 4678888888886665322211111111 11 11222223345555555666666666666666655443
No 212
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.29 E-value=20 Score=40.98 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=13.4
Q ss_pred HHHHHHHhhhhhhhHHHHHhhhh
Q 001419 397 LAKQKRNNRKGKEKKREERSSMA 419 (1080)
Q Consensus 397 ~akeee~~rk~~ek~~ee~~~~~ 419 (1080)
++||||-+|||+|-.|.|++.+.
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 35566666666666555554443
No 213
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=49.15 E-value=1.6e+02 Score=34.89 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhhhhh
Q 001419 377 ESEQKAKRGAAEKEKKAKKKLAKQKR-NNRKGKEKKREERSSMALSD 422 (1080)
Q Consensus 377 e~er~~kk~~k~kekk~~~k~akeee-~~rk~~ek~~ee~~~~~~e~ 422 (1080)
+.+|..|=++.+|++--+++||..+. +.++++|-.+-|+..+++.+
T Consensus 290 e~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeae 336 (428)
T KOG2668|consen 290 EVERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAE 336 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHH
Confidence 44455555556666666666666555 44455555555555544433
No 214
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=49.14 E-value=40 Score=34.13 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001419 356 EAVALKRQEELIREEEAA 373 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e 373 (1080)
+++|..+=+=+|-|..+.
T Consensus 75 d~IA~~rVqPvLdeI~er 92 (126)
T PF12757_consen 75 DAIARKRVQPVLDEIDER 92 (126)
T ss_pred HHHHHHhcCCchHHHHHH
Confidence 344444444455555443
No 215
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=48.63 E-value=40 Score=37.84 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=6.0
Q ss_pred hhHHHHHHHH
Q 001419 280 LVDDVLLLLE 289 (1080)
Q Consensus 280 l~~Dfq~~LE 289 (1080)
+++|.-.||.
T Consensus 57 DveDAKVLLg 66 (243)
T PF05279_consen 57 DVEDAKVLLG 66 (243)
T ss_pred cccccccccc
Confidence 4566666665
No 216
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=48.45 E-value=2.2e+02 Score=33.41 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=21.3
Q ss_pred HhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 332 LGRRTVEIFV-LAHIFSNKIEVAYQEAVALKRQEELIREEEAAWL 375 (1080)
Q Consensus 332 lgrr~~~ifa-~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~ 375 (1080)
-+||||-.+. .-.-|+| ..-+...++.+|.++.+-+|+.++
T Consensus 140 RNRRmFG~LlGTL~KFkq---E~kr~t~rq~KraEieqKlEeq~~ 181 (340)
T KOG3756|consen 140 RNRRMFGLLLGTLQKFKQ---ESKRATERQVKRAEIEQKLEEQAE 181 (340)
T ss_pred HhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998433 4555763 222222245555555555544333
No 217
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=48.28 E-value=47 Score=41.18 Aligned_cols=58 Identities=34% Similarity=0.302 Sum_probs=31.3
Q ss_pred hhHHhhhHHHHHHHHhhHHHH-----H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001419 329 LTELGRRTVEIFVLAHIFSNK-----I-EVA-----YQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEK 391 (1080)
Q Consensus 329 ~~Elgrr~~~ifa~~k~F~~r-----i-~~A-----y~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kek 391 (1080)
++|+-|+|-|.+.-+ .+..- . +.| ..|---.-+|++|.+||.= .+||||||.+|-|-|
T Consensus 333 ~te~e~k~~q~l~da-~l~n~~~~~k~eela~~kls~ee~~~rt~qlr~mrelmf----reerkakr~~kiksk 401 (869)
T COG5644 333 RTESERKMHQALLDA-GLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMF----REERKAKRVAKIKSK 401 (869)
T ss_pred chHHHHHHHHHHHhc-ccCChhhhhHHHHHHhccCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Confidence 467778887776522 22110 0 111 2233334567788888753 456777777654444
No 218
>PTZ00491 major vault protein; Provisional
Probab=48.16 E-value=69 Score=41.56 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=36.4
Q ss_pred cccchhHH-HHHHhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001419 317 FNKDSIER-DERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKK 392 (1080)
Q Consensus 317 vs~dtve~-ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk 392 (1080)
|.+-+||+ |.+-+.- =.|-+++.+ +...+--.|.-+|+..+.|.|+.-++|.+|-.-+++.|+.+|
T Consensus 633 VDvqsvEpvD~~tr~~-LqkSVqlAi---------EItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~ 699 (850)
T PTZ00491 633 VDVQSVEPVDERTRDS-LQKSVQLAI---------EITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRT 699 (850)
T ss_pred EeeeeeeecCHHHHHH-HHHHHHHhh---------hhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHH
Confidence 55566776 5544332 234444444 555555556666777777777777766665444444444433
No 219
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=48.12 E-value=17 Score=46.67 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=14.8
Q ss_pred CCCCCCccc-cccCCCCCCC
Q 001419 445 PEKPDVLED-VSDVSDSVDG 463 (1080)
Q Consensus 445 ~~k~d~~e~-~sd~sd~~d~ 463 (1080)
..|-|..++ +||+.|-++=
T Consensus 784 ~~k~da~~~~dsd~~~~~sl 803 (975)
T KOG0112|consen 784 HRKGDASDESDSDSNDKLSL 803 (975)
T ss_pred CCcCcCccCccccccCcccc
Confidence 357788888 8999998763
No 220
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.99 E-value=45 Score=40.28 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=16.0
Q ss_pred hhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 334 RRTVE-IFVLAHIFSNKIEVAYQEAVALKRQEELIREE 370 (1080)
Q Consensus 334 rr~~~-ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~ 370 (1080)
+.+|+ |||.+.+. --.|+|-+.+-.=+..++.+
T Consensus 104 ~~~FelifAFDEiv----sLGyre~v~laQikty~eMd 137 (512)
T KOG2635|consen 104 ENAFELIFAFDEIV----SLGYRENVNLAQIKTYLEMD 137 (512)
T ss_pred Hhhhhhhhccchhh----hhcccccccHHHhhhhhccc
Confidence 35666 44544443 34477776443333334433
No 221
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=47.86 E-value=2.1e+02 Score=29.92 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=3.8
Q ss_pred HHHHHHHHhc
Q 001419 284 VLLLLERAAL 293 (1080)
Q Consensus 284 fq~~LEr~~L 293 (1080)
|+.+|-.|..
T Consensus 19 ll~ll~~~~~ 28 (161)
T COG0711 19 LLWLLKKFVW 28 (161)
T ss_pred HHHHHHHHhH
Confidence 3333333333
No 222
>PRK12704 phosphodiesterase; Provisional
Probab=47.14 E-value=1.7e+02 Score=36.31 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=11.9
Q ss_pred cccccCCCCcccCCCcccee
Q 001419 516 ASVMDDSSSTCSTDSVPSVV 535 (1080)
Q Consensus 516 ~s~~~~~sstcs~ds~~~~~ 535 (1080)
..+|.=-++-|.++...|||
T Consensus 195 ~~a~qr~a~~~~~e~~~~~v 214 (520)
T PRK12704 195 AQAIQRCAADHVAETTVSVV 214 (520)
T ss_pred HHHHHhhcchhhhhhceeee
Confidence 34555556666666666555
No 223
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=47.13 E-value=36 Score=41.27 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=13.4
Q ss_pred cccCCCCCCCCCCCcccCC
Q 001419 550 NQKSPSRGKNQRGKSTYDG 568 (1080)
Q Consensus 550 ~~~s~~rg~~~~~~~~~~~ 568 (1080)
-...||-|--|.+....++
T Consensus 635 Gkl~P~~GE~RKnhrL~iG 653 (807)
T KOG0066|consen 635 GKLDPNDGELRKNHRLRIG 653 (807)
T ss_pred cCCCCCcchhhccceeeee
Confidence 4578999987777655544
No 224
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.93 E-value=84 Score=38.78 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 338 EIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAW 374 (1080)
Q Consensus 338 ~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~ 374 (1080)
+|..+.--+...++..|.+.+-...+.-|++-.-.|+
T Consensus 491 ~iL~l~d~lR~~~l~~~g~~led~~g~~lvk~v~~e~ 527 (586)
T KOG2007|consen 491 EILELCDTLRDSDLLELGVRLEDRKGSTLVKAVDREE 527 (586)
T ss_pred HHHHHhHHHHHhhHHHhhhHHHhCCchHHHHHhhhHH
Confidence 5555555555445555555554444444444444333
No 225
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.79 E-value=94 Score=43.01 Aligned_cols=41 Identities=12% Similarity=0.385 Sum_probs=29.9
Q ss_pred HHHHHhhHHhhhHHH--HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001419 324 RDERRLTELGRRTVE--IFVLAHIFSNKIEVAYQEAVALKRQE 364 (1080)
Q Consensus 324 ~ee~~~~Elgrr~~~--ifa~~k~F~~ri~~Ay~E~~A~~rQ~ 364 (1080)
+.++...+..++-+. +|+|+.+...|-..+|.+++-.+...
T Consensus 941 r~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~ 983 (1486)
T PRK04863 941 KQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKN 983 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcc
Confidence 355555555555443 89999999999999999999855443
No 226
>PRK11637 AmiB activator; Provisional
Probab=46.49 E-value=3.3e+02 Score=32.47 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=5.0
Q ss_pred CCCCCCCcC
Q 001419 475 RDTSPVNWD 483 (1080)
Q Consensus 475 r~~s~v~~~ 483 (1080)
+.+++..|-
T Consensus 314 ~i~~~fg~~ 322 (428)
T PRK11637 314 PTLHRFGEQ 322 (428)
T ss_pred CccCCCCCC
Confidence 555665554
No 227
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=46.30 E-value=33 Score=36.99 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Q 001419 376 AESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGK 408 (1080)
Q Consensus 376 ~e~er~~kk~~k~kekk~~~k~akeee~~rk~~ 408 (1080)
++.|+++.+.+.+.++++.+.+|+.+.+++..+
T Consensus 175 ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~ 207 (242)
T cd03405 175 AEGEEEAERIRADADRERTVILAEAYREAQEIR 207 (242)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445455555555444433
No 228
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=45.82 E-value=2.4e+02 Score=29.27 Aligned_cols=10 Identities=40% Similarity=0.232 Sum_probs=6.8
Q ss_pred HHHHHHhhHH
Q 001419 338 EIFVLAHIFS 347 (1080)
Q Consensus 338 ~ifa~~k~F~ 347 (1080)
+=++||+.++
T Consensus 25 EDgaLA~~LQ 34 (132)
T PF15295_consen 25 EDGALAHRLQ 34 (132)
T ss_pred hhHHHHHHHH
Confidence 3456788887
No 229
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=45.68 E-value=1.3e+02 Score=33.85 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=4.0
Q ss_pred hhhHHHHHH
Q 001419 333 GRRTVEIFV 341 (1080)
Q Consensus 333 grr~~~ifa 341 (1080)
..-.++-+.
T Consensus 85 ~~~aye~Wl 93 (264)
T PF13904_consen 85 SLSAYEEWL 93 (264)
T ss_pred ccchHHHHH
Confidence 334455444
No 230
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.42 E-value=4e+02 Score=30.05 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHh
Q 001419 349 KIEVAYQEAVALK-RQEELIREEEAAW-LAESEQKAKRG 385 (1080)
Q Consensus 349 ri~~Ay~E~~A~~-rQ~~Ll~E~E~e~-~~e~er~~kk~ 385 (1080)
+++..++|..+++ ++.+|+.|.+++. +.+.|-+++++
T Consensus 62 ~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~ 100 (246)
T KOG4657|consen 62 NLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555443 4567776666544 34555555555
No 231
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.42 E-value=1.5e+02 Score=35.92 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=4.6
Q ss_pred CCCCCCCcC
Q 001419 475 RDTSPVNWD 483 (1080)
Q Consensus 475 r~~s~v~~~ 483 (1080)
+-.-||+..
T Consensus 298 ~l~~PV~G~ 306 (420)
T COG4942 298 QLAWPVTGR 306 (420)
T ss_pred CcCCCCCCc
Confidence 445565554
No 232
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=45.08 E-value=53 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001419 362 RQEELIREEEAAWLAESEQ 380 (1080)
Q Consensus 362 rQ~~Ll~E~E~e~~~e~er 380 (1080)
||..+.+|.|+.+|+++|.
T Consensus 33 RlAReQkErEE~ER~ekEE 51 (171)
T PF05672_consen 33 RLAREQKEREEQERLEKEE 51 (171)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5567777777777665543
No 233
>PRK11637 AmiB activator; Provisional
Probab=44.90 E-value=2.5e+02 Score=33.44 Aligned_cols=11 Identities=18% Similarity=0.307 Sum_probs=5.4
Q ss_pred eeeeehhhhhH
Q 001419 223 KHFFIEKEVTS 233 (1080)
Q Consensus 223 kKFyVsKnvLA 233 (1080)
.+|.+.-.+++
T Consensus 16 ~~~~~~~~~~~ 26 (428)
T PRK11637 16 RRFAIRPILYA 26 (428)
T ss_pred hhhhhhhHHHH
Confidence 45555444444
No 234
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=44.52 E-value=1.1e+02 Score=30.68 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001419 351 EVAYQEAVALKRQEELIREEEAA 373 (1080)
Q Consensus 351 ~~Ay~E~~A~~rQ~~Ll~E~E~e 373 (1080)
..+|.....+..+++.|.+.|.|
T Consensus 30 ~tSwekr~~~R~~~~~~K~~ekE 52 (108)
T PF03879_consen 30 RTSWEKRMEKRLELKAIKEKEKE 52 (108)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666555444
No 235
>PF08243 SPT2: SPT2 chromatin protein; InterPro: IPR013256 This entry includes the Saccharomyces cerevisiae (Baker's yeast) protein SPT2 which is a chromatin protein involved in transcriptional regulation []. These proteins shows conservation of several domains across numerous species, including having a cluster of positively charged amino acids. This cluster probably functions in the binding properties of the proteins []. Sin1p/Spt2p probably modulates the local chromatin structure by binding two strands of double-stranded DNA at their crossover point. Sin1p/Spt2p has sequence similarity to HMG1 and serves as a negative transcriptional regulator of a small family of genes that are activated by the SWI/SNF chromatin-remodelling complex. It is also involved in maintaining the integrity of chromatin during transcription elongation. Sin1p/Spt2 is required for, and is directly involved in, the efficient recruitment of the mRNA cleavage/polyadenylation complex []. Spt2 is also involved in regulating levels of histone H3 over transcribed regions [].
Probab=44.08 E-value=33 Score=34.39 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 350 IEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 350 i~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
+++.|.+...++++-..|..+|.++.++.|++.++
T Consensus 74 MEA~~~~I~~EE~rS~r~A~~ED~~e~~~e~~~~~ 108 (116)
T PF08243_consen 74 MEASFADIEKEEKRSARIARLEDEREERREEEEER 108 (116)
T ss_pred hhcCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566666666666666666655544444443333
No 236
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=43.79 E-value=1e+02 Score=35.54 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Q 001419 354 YQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRK 406 (1080)
Q Consensus 354 y~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~~rk 406 (1080)
|+++. ...++.|+-|++..+++..|.|.+-..-+||=+..|+.-.|.-++|+
T Consensus 242 YRqKk-Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 242 YRQKK-RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88886 44566788888888887777777777778888888877666665553
No 237
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=43.73 E-value=1e+02 Score=36.25 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=12.0
Q ss_pred CCCcccCCCccceeeec
Q 001419 522 SSSTCSTDSVPSVVMYG 538 (1080)
Q Consensus 522 ~sstcs~ds~~~~~~~g 538 (1080)
-|--|-|+|.|---..|
T Consensus 316 msvfcqtesfpaerthg 332 (561)
T KOG1103|consen 316 MSVFCQTESFPAERTHG 332 (561)
T ss_pred hhhhhhcccCchhhccc
Confidence 36679999988555444
No 238
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=43.44 E-value=70 Score=39.40 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=13.7
Q ss_pred cccccCCCCcccCCCcccee
Q 001419 516 ASVMDDSSSTCSTDSVPSVV 535 (1080)
Q Consensus 516 ~s~~~~~sstcs~ds~~~~~ 535 (1080)
..+|.=-++-|.++...+||
T Consensus 189 ~~aiqr~a~~~~~e~~~~~v 208 (514)
T TIGR03319 189 ATAIQRYAGDHVAETTVSVV 208 (514)
T ss_pred HHHHHhccchhhhhheeeeE
Confidence 45566667777777777666
No 239
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.33 E-value=50 Score=40.79 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=12.2
Q ss_pred hhhhccccccccccccc-eeccCCC
Q 001419 242 SGLKALEGQSKSKKTKA-KLLDAED 265 (1080)
Q Consensus 242 qgLy~Le~Fres~Ks~i-~l~DtDe 265 (1080)
|.|..|+.|+ +.+| -|+-||-
T Consensus 464 QRlesL~kFk---~~eidvLiaTDv 485 (691)
T KOG0338|consen 464 QRLESLEKFK---KEEIDVLIATDV 485 (691)
T ss_pred HHHHHHHHHH---hccCCEEEEech
Confidence 5566677775 4444 4555653
No 240
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.08 E-value=29 Score=42.97 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 001419 387 AEKEKKAKKKLAKQKRNNRKGKEKKREERSS 417 (1080)
Q Consensus 387 k~kekk~~~k~akeee~~rk~~ek~~ee~~~ 417 (1080)
++||+++-++.||+||-.++|+||....++.
T Consensus 1030 ~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~ 1060 (1077)
T COG5192 1030 EEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060 (1077)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5667777777777777777777665544443
No 241
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=42.68 E-value=1.5e+02 Score=32.75 Aligned_cols=10 Identities=10% Similarity=0.531 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001419 350 IEVAYQEAVA 359 (1080)
Q Consensus 350 i~~Ay~E~~A 359 (1080)
|..|+.++++
T Consensus 151 v~~a~~~~~~ 160 (261)
T TIGR01933 151 VKEAFDDVII 160 (261)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 242
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=42.60 E-value=93 Score=38.30 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=4.4
Q ss_pred cCCCccc
Q 001419 541 KGNSLAN 547 (1080)
Q Consensus 541 ~~~~~~~ 547 (1080)
|||.|+.
T Consensus 429 ~g~v~~~ 435 (492)
T PF02029_consen 429 KGNVFSS 435 (492)
T ss_pred cCCcccC
Confidence 6676644
No 243
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=41.38 E-value=16 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=13.5
Q ss_pred ccccCCeEEEEEEEEEEeccc
Q 001419 176 GFKDGDTLIIKAQVQVISFCA 196 (1080)
Q Consensus 176 GFLVDDsLtIEc~VkVis~tg 196 (1080)
|.-.---|.++-+|-|..+.|
T Consensus 227 GIP~PePIlLk~hVLVM~FlG 247 (520)
T KOG2270|consen 227 GIPCPEPILLKNHVLVMEFLG 247 (520)
T ss_pred CCCCCCceeeecceEeeeecc
Confidence 433345677788888877654
No 244
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=41.19 E-value=2e+02 Score=27.14 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=6.6
Q ss_pred hhHHhhhHHHHHH
Q 001419 329 LTELGRRTVEIFV 341 (1080)
Q Consensus 329 ~~Elgrr~~~ifa 341 (1080)
+.-+||...-++.
T Consensus 11 LIkfGRysaL~lG 23 (81)
T KOG4326|consen 11 LIKFGRYSALSLG 23 (81)
T ss_pred HHHhhHHHHHHHH
Confidence 3446665554444
No 245
>KOG2484 consensus GTPase [General function prediction only]
Probab=41.16 E-value=25 Score=41.99 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=21.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHH---HHHHHHHhhhhh
Q 001419 365 ELIREEEAAW-LAESEQKAKRGAAEKEKKAKKK---LAKQKRNNRKGK 408 (1080)
Q Consensus 365 ~Ll~E~E~e~-~~e~er~~kk~~k~kekk~~~k---~akeee~~rk~~ 408 (1080)
++|.|.|..+ +.++||+++|+.++.|...+++ ++..+.+-.+.+
T Consensus 61 ~il~eve~~k~~~~e~re~rk~ark~e~~~~k~~~le~~~~~~~~~~~ 108 (435)
T KOG2484|consen 61 QILPEVESKKMRIEEEREARKAARKEEAIERKKNGLEANVDDKDERIE 108 (435)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHhcC
Confidence 3455555543 5566666555554444333333 455555444433
No 246
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=40.85 E-value=3.8e+02 Score=29.20 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=13.7
Q ss_pred cchhHHHHHHHHHHhcCCC
Q 001419 278 FVLVDDVLLLLERAALEPL 296 (1080)
Q Consensus 278 fvl~~Dfq~~LEr~~LEpl 296 (1080)
|.....|+.++..+.-..-
T Consensus 44 fl~~~~l~~~~~~i~~~~g 62 (212)
T cd08045 44 FLNPSPLAKKIRKIAKKHG 62 (212)
T ss_pred ccCHHHHHHHHHHHHHHcC
Confidence 4567788888888876544
No 247
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=40.63 E-value=67 Score=36.76 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------------HHHHHHhhh-----------
Q 001419 351 EVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKL-------------AKQKRNNRK----------- 406 (1080)
Q Consensus 351 ~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~-------------akeee~~rk----------- 406 (1080)
+.+-++.+..+|-.+|..+.-...+.+++..+...+.+++||++... +.++....|
T Consensus 72 mk~kqeniVreRekqlak~~~~k~q~k~~e~~~eKe~K~~kkr~~s~LSFa~DdEededD~~~k~~~~Kk~klGKdP~VD 151 (331)
T KOG2894|consen 72 MKAKQENIVREREKQLAKKKLSKTQQKKRELAREKEEKKEKKRQISRLSFALDDEEDEDDAEEKSIPLKKGKLGKDPDVD 151 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhcchhhhhcCCCCCcc
Q ss_pred -----hhhhHHHHHhhhhhhhh--hhccCCChhhh
Q 001419 407 -----GKEKKREERSSMALSDR--LEDENPSDEKK 434 (1080)
Q Consensus 407 -----~~ek~~ee~~~~~~e~~--~~ee~~~~~~~ 434 (1080)
.+|++++|.+.+....+ ..+++..++++
T Consensus 152 TSFLPDrEREeeEnr~RE~L~~eW~~~qe~~K~Ee 186 (331)
T KOG2894|consen 152 TSFLPDREREEEENRLREELRQEWEAKQEKIKNEE 186 (331)
T ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHhcCCc
No 248
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=40.31 E-value=1.8e+02 Score=34.74 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=7.2
Q ss_pred cccCCCCCCCCCCC
Q 001419 550 NQKSPSRGKNQRGK 563 (1080)
Q Consensus 550 ~~~s~~rg~~~~~~ 563 (1080)
-|--|-.-||..+|
T Consensus 250 q~a~p~~kk~kk~k 263 (510)
T PF04747_consen 250 QQAAPQEKKNKKNK 263 (510)
T ss_pred hhcCcchhhccccc
Confidence 34445555565554
No 249
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.10 E-value=5.4e+02 Score=31.86 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=12.7
Q ss_pred HhhHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 001419 328 RLTELGRRTVEIFVLAHIFSNKIEVAYQEAV 358 (1080)
Q Consensus 328 ~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~ 358 (1080)
+...|.+++-++=. .++.+|+.+..+..
T Consensus 259 ~i~~L~~~l~~l~~---~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 259 RIDALQKELAELKE---EEEEELERALEEQR 286 (582)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34455555554333 33344444444443
No 250
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.92 E-value=35 Score=37.15 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001419 354 YQEAVALKRQ 363 (1080)
Q Consensus 354 y~E~~A~~rQ 363 (1080)
|-|..-+.++
T Consensus 156 YAer~~~~~~ 165 (196)
T smart00786 156 YAERKDAKQK 165 (196)
T ss_pred HHHHhHHHHH
Confidence 4444433333
No 251
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=39.86 E-value=23 Score=46.24 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHHHHHhh--hhhhhHHHHHhhhhh
Q 001419 366 LIREEEAAWLAESEQKAKRGA-------------AEKEKKAKKKLAKQKRNNR--KGKEKKREERSSMAL 420 (1080)
Q Consensus 366 Ll~E~E~e~~~e~er~~kk~~-------------k~kekk~~~k~akeee~~r--k~~ek~~ee~~~~~~ 420 (1080)
+--|.|++++++.|+++|+.. |+|-+|+.+|..|..+-.+ +.+.|+++|+.++-+
T Consensus 549 se~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~keT~~a~k~EkeRrkRie 618 (1567)
T KOG1015|consen 549 SESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKETQNALKEEKERRKRIE 618 (1567)
T ss_pred ccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchhHHHHHHHHHHHHHHHH
Confidence 445666666667777777753 3333455555555554333 344444444444443
No 252
>smart00784 SPT2 SPT2 chromatin protein. This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation PUBMED:15563464.
Probab=39.83 E-value=50 Score=33.15 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 350 IEVAYQEAVALKRQEELIREEEAAWLAESE 379 (1080)
Q Consensus 350 i~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~e 379 (1080)
+++.|.+.+.++.+-..|..+|.++.++.|
T Consensus 69 MEa~~~~i~~EE~~s~r~a~~ED~~e~~~e 98 (111)
T smart00784 69 MEAGGADIQEEERRSARLARLEDREEERLE 98 (111)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555555555555555444444433333
No 253
>PHA03247 large tegument protein UL36; Provisional
Probab=39.11 E-value=1.2e+03 Score=35.11 Aligned_cols=10 Identities=10% Similarity=-0.133 Sum_probs=4.6
Q ss_pred CCCCCCCCCc
Q 001419 836 RIDPNSVQSA 845 (1080)
Q Consensus 836 r~~~~s~~~g 845 (1080)
+.-.-+..+|
T Consensus 2948 ~p~~~~~p~~ 2957 (3151)
T PHA03247 2948 DPAGAGEPSG 2957 (3151)
T ss_pred CCCCCCCCCC
Confidence 3334445555
No 254
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=39.01 E-value=2.2e+02 Score=28.70 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 001419 361 KRQEELIREEEA 372 (1080)
Q Consensus 361 ~rQ~~Ll~E~E~ 372 (1080)
+.|.++|.|-.+
T Consensus 28 Ee~~~~i~eAr~ 39 (108)
T COG2811 28 EEAEQIIKEARE 39 (108)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 255
>PLN02316 synthase/transferase
Probab=38.32 E-value=63 Score=43.03 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=5.0
Q ss_pred ccccCCeEEEE
Q 001419 176 GFKDGDTLIIK 186 (1080)
Q Consensus 176 GFLVDDsLtIE 186 (1080)
.|..++.+.+.
T Consensus 136 ~~~~~~~~f~~ 146 (1036)
T PLN02316 136 NFSRGNKLFVY 146 (1036)
T ss_pred ccCCCCeEEec
Confidence 44444444443
No 256
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=38.24 E-value=78 Score=36.84 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHH
Q 001419 345 IFSNKIEVAYQEAV 358 (1080)
Q Consensus 345 ~F~~ri~~Ay~E~~ 358 (1080)
-|+.-++.+|..++
T Consensus 264 sf~~eLKr~c~~kv 277 (410)
T KOG4715|consen 264 SFNNELKRLCGLKV 277 (410)
T ss_pred HHHHHHHHhcCCcc
Confidence 34444444444444
No 257
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=37.60 E-value=1.7e+02 Score=28.97 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=6.3
Q ss_pred ccCCCCCCCCCcc
Q 001419 440 DAQPLPEKPDVLE 452 (1080)
Q Consensus 440 ~~~~~~~k~d~~e 452 (1080)
-++.++-|+|-||
T Consensus 104 svgklahkvdlle 116 (121)
T PF10669_consen 104 SVGKLAHKVDLLE 116 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 258
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=37.43 E-value=5.3e+02 Score=27.36 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=5.5
Q ss_pred chhHHHHHHhhHHhh
Q 001419 320 DSIERDERRLTELGR 334 (1080)
Q Consensus 320 dtve~ee~~~~Elgr 334 (1080)
|.|+.+-.++.+.+|
T Consensus 31 eei~~ei~rRvee~r 45 (149)
T PF15346_consen 31 EEIEKEIQRRVEEER 45 (149)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334433333333333
No 259
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=37.36 E-value=1.1e+02 Score=30.85 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 001419 389 KEKKAKKKLAKQKRNNRKGKEKKREERSS 417 (1080)
Q Consensus 389 kekk~~~k~akeee~~rk~~ek~~ee~~~ 417 (1080)
+.|-++.|+||+|-.+..++=|+.+|++=
T Consensus 27 ~~r~~RLKqAK~EA~~EI~~yr~~kE~ef 55 (113)
T TIGR01147 27 KRKTKRLKQAKEEAQKEVEKYKQQREKEF 55 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666665555444444444333
No 260
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.11 E-value=1.6e+02 Score=35.51 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=7.8
Q ss_pred hhhhhhcccCCCCC
Q 001419 433 KKEFIVEDAQPLPE 446 (1080)
Q Consensus 433 ~~~~~~~~~~~~~~ 446 (1080)
++..++.++.++++
T Consensus 118 ~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 118 EMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555556654
No 261
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.86 E-value=3.4e+02 Score=35.04 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 001419 399 KQKRNNR 405 (1080)
Q Consensus 399 keee~~r 405 (1080)
.+|+|+|
T Consensus 512 ~eErk~r 518 (697)
T PF09726_consen 512 QEERKAR 518 (697)
T ss_pred HHHHHHH
Confidence 3333333
No 262
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.66 E-value=3.1e+02 Score=29.16 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 001419 333 GRRTVEIFV 341 (1080)
Q Consensus 333 grr~~~ifa 341 (1080)
|--+|=.|+
T Consensus 108 Gf~LfL~l~ 116 (192)
T PF05529_consen 108 GFALFLSLV 116 (192)
T ss_pred HHHHHHHHH
Confidence 333343333
No 263
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=36.45 E-value=1.1e+02 Score=33.56 Aligned_cols=11 Identities=0% Similarity=0.253 Sum_probs=5.4
Q ss_pred HHHHhhHHhhh
Q 001419 325 DERRLTELGRR 335 (1080)
Q Consensus 325 ee~~~~Elgrr 335 (1080)
++|+....+++
T Consensus 108 ~~~~k~~~~~~ 118 (197)
T PRK12585 108 RSVKKDDIKKK 118 (197)
T ss_pred HHHHhhhhhhc
Confidence 45555554443
No 264
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.03 E-value=1.4e+02 Score=32.30 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=14.1
Q ss_pred HHHhhHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 001419 326 ERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAV 358 (1080)
Q Consensus 326 e~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~ 358 (1080)
+..|.|+|+....... .....+++++
T Consensus 116 ~N~C~e~~~~~~~~~~-------~~~~~~~~G~ 141 (176)
T PF12999_consen 116 PNTCAELGKEYREELE-------EEEEIYKEGL 141 (176)
T ss_pred ccHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4568887755443332 3344556665
No 265
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=35.26 E-value=4.4e+02 Score=29.28 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHH
Q 001419 348 NKIEVAYQEAVALKRQE-ELIRE 369 (1080)
Q Consensus 348 ~ri~~Ay~E~~A~~rQ~-~Ll~E 369 (1080)
+|.+..|. .++.+.|- .|+.+
T Consensus 24 ~Rpeilye-~l~kL~pwq~latk 45 (231)
T COG5493 24 QRPEILYE-VLAKLTPWQQLATK 45 (231)
T ss_pred hChHHHHH-HHHhhchHHHHHHH
Confidence 66666664 44444443 44444
No 266
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.13 E-value=3.9e+02 Score=31.69 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 348 NKIEVAYQEAVALKRQEELIREEEAAWLA 376 (1080)
Q Consensus 348 ~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 376 (1080)
.|+-.+|+--||..+|.|--.+.|+|.|+
T Consensus 115 dr~C~~F~~yia~~k~~kde~lkE~e~r~ 143 (469)
T KOG3878|consen 115 DRMCSAFRPYIAAVKQDKDETLKEKELRL 143 (469)
T ss_pred HhcchhhhhHHHHhhhhhhhHHHHHHHHH
Confidence 45566666666666665543333333333
No 267
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=35.09 E-value=32 Score=42.25 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.3
Q ss_pred CCCCCCccc
Q 001419 445 PEKPDVLED 453 (1080)
Q Consensus 445 ~~k~d~~e~ 453 (1080)
....|.||+
T Consensus 467 ~~t~dPLe~ 475 (517)
T PF12569_consen 467 LKTEDPLEE 475 (517)
T ss_pred hcCCcHHHH
Confidence 334455555
No 268
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=34.90 E-value=1e+02 Score=30.91 Aligned_cols=35 Identities=43% Similarity=0.361 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHH
Q 001419 364 EELIREEEAAWLAESEQKAKRGA--AEKEKKAKKKLA 398 (1080)
Q Consensus 364 ~~Ll~E~E~e~~~e~er~~kk~~--k~kekk~~~k~a 398 (1080)
++++.++++.-+++.+++|.|-- ..+|=||+.+-|
T Consensus 17 ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~HA 53 (109)
T PHA02571 17 EELLSELQARNEAEAEKKAAKILKKNRREIKRLKKHA 53 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555555655666666655542 224444444433
No 269
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=34.81 E-value=5.3e+02 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=7.1
Q ss_pred HHHHhhHHhhhHHHHH
Q 001419 325 DERRLTELGRRTVEIF 340 (1080)
Q Consensus 325 ee~~~~Elgrr~~~if 340 (1080)
|+-+..|+..++-++-
T Consensus 61 E~TkQ~E~~ak~~e~e 76 (276)
T PF12037_consen 61 EETKQAELQAKIAEYE 76 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445544444433
No 270
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=34.53 E-value=4.4e+02 Score=29.91 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=3.9
Q ss_pred HHHhhHHhh
Q 001419 326 ERRLTELGR 334 (1080)
Q Consensus 326 e~~~~Elgr 334 (1080)
-+.+||.-|
T Consensus 182 N~E~ME~Ek 190 (322)
T KOG2962|consen 182 NFELMEAEK 190 (322)
T ss_pred hHHHHHHHh
Confidence 344454433
No 271
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=34.52 E-value=37 Score=40.40 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=13.3
Q ss_pred cccCCcccccCCchhhhhhhh
Q 001419 913 RQTQGVLVDEFPHLDIINDLL 933 (1080)
Q Consensus 913 ~Q~qg~v~dEFPHLDIINDLL 933 (1080)
+|--|-+.+-|-|+-.--|.|
T Consensus 443 ~~~~G~~~htfshi~~ts~V~ 463 (555)
T KOG2457|consen 443 DLFKGQAKHTFSHICVTSDVL 463 (555)
T ss_pred hhcccchhhhhhhhhhHHHHH
Confidence 455666666777766665554
No 272
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=68 Score=40.75 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=55.8
Q ss_pred hhhhHHHhHHHHhhhhhccccccccccccceeccCCCCCCCceEeeccccchhHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRT 308 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Dfq~~LEr~~LEplp~~~~~~~q~~~ 308 (1080)
=|+..+||+++|++.|+-.+.|+.+-+.- ++|..-...|+
T Consensus 91 vnqa~~~~l~~~~~a~~~~~~~~~~~yts----------------------------------------~~~~~et~dlt 130 (1203)
T KOG4598|consen 91 VNQASNDLLFEQSCAISLHDSGISKCYTS----------------------------------------ENDSLETKDLT 130 (1203)
T ss_pred hhhHHHHHHHHHhhhhccChhhhhhhhCC----------------------------------------CcccccchhhH
Confidence 78888999999999998888887443311 11111112233
Q ss_pred ccCCCCCCcccchhH-HHHHHhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 309 KESNSGEDFNKDSIE-RDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAW 374 (1080)
Q Consensus 309 ~~~~~~~~vs~dtve-~ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~ 374 (1080)
.. |.-++-| .+.+...||-|-||+ ||.|-|| --.|++||.-|=+-.
T Consensus 131 ~s------fgw~s~ea~~qhdiqelcr~mfd--alehk~k------------~t~~~~li~~ly~g~ 177 (1203)
T KOG4598|consen 131 QS------FGWTSNEAYDQHDVQELCRLMFD--ALEHKWK------------GTEHEKLIQDLYRGT 177 (1203)
T ss_pred hh------cCCCcchhhhhhhHHHHHHHHHH--HHHhhhc------------CchHHHHHHHHhcch
Confidence 33 4444445 488889999988877 4567776 345778888775433
No 273
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.10 E-value=22 Score=38.96 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=57.0
Q ss_pred ccCccCeEEEEe---ceeeeehhhhhHH-HhHHHH---------hhhhhccccccccccccceeccCCCCCCCceEeecc
Q 001419 210 SREKTDAILKVV---VKHFFIEKEVTST-LVMDSL---------YSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVEND 276 (1080)
Q Consensus 210 SkE~SDV~LkV~---vkKFyVsKnvLAT-~YMnSL---------LqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d 276 (1080)
-..+|||.+++. +++.-+||-|||. .=|=++ .+-|-+.+ -+++-.+|+.||||++.-.+. |
T Consensus 63 k~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad--~Ea~~t~iRWIYTDEidfk~d----D 136 (280)
T KOG4591|consen 63 KEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDAD--FEAFHTAIRWIYTDEIDFKED----D 136 (280)
T ss_pred cccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccC--HHHHHHhheeeeccccccccc----h
Confidence 357899999998 5999999999983 222222 11111111 134677889999998654432 1
Q ss_pred ccchhHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 001419 277 MFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKE 310 (1080)
Q Consensus 277 ~fvl~~Dfq~~LEr~~LEplp~~~~~~~q~~~~~ 310 (1080)
+..-.+-.++.|+.|+-|+. -|.|.+-.-
T Consensus 137 --~~L~el~e~An~FqLe~Lke---~C~k~l~a~ 165 (280)
T KOG4591|consen 137 --EFLLELCELANRFQLELLKE---RCEKGLGAL 165 (280)
T ss_pred --HHHHHHHHHHHHHHHHHHHH---HHHHHHhhH
Confidence 12334566778888888876 576665544
No 274
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.98 E-value=2.8e+02 Score=30.34 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=3.6
Q ss_pred HHHHhcCC
Q 001419 288 LERAALEP 295 (1080)
Q Consensus 288 LEr~~LEp 295 (1080)
|+|++-.|
T Consensus 36 l~rl~knp 43 (213)
T KOG4055|consen 36 LERLMKNP 43 (213)
T ss_pred HHHHhcCC
Confidence 44444443
No 275
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=33.59 E-value=2e+02 Score=31.59 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=4.3
Q ss_pred HhhHHHHHHHH
Q 001419 343 AHIFSNKIEVA 353 (1080)
Q Consensus 343 ~k~F~~ri~~A 353 (1080)
.+|.++.+..|
T Consensus 15 dki~~eiL~eA 25 (207)
T PRK01005 15 DALREETLKPA 25 (207)
T ss_pred HHHHHHHHHHH
Confidence 44444333333
No 276
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=33.30 E-value=28 Score=46.13 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.3
Q ss_pred cccCCchhhhhhhhcccccccccccccc
Q 001419 920 VDEFPHLDIINDLLDDEHGVGMAAGAST 947 (1080)
Q Consensus 920 ~dEFPHLDIINDLL~eeq~~g~~~~~~~ 947 (1080)
.-|||||- --|||--|-+.|-|+..++
T Consensus 1931 s~~y~~~~-~~~l~h~e~~~g~~~~~~s 1957 (2131)
T KOG4369|consen 1931 SNLYNHLA-AQLLTHQESSTGAPGPTSS 1957 (2131)
T ss_pred cccchhHH-HHHHHhhhccCCCCCCCCC
Confidence 35889985 4688888888887777555
No 277
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=33.26 E-value=1.7e+02 Score=32.35 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=5.8
Q ss_pred cCCeEEEEEEEEE
Q 001419 179 DGDTLIIKAQVQV 191 (1080)
Q Consensus 179 VDDsLtIEc~VkV 191 (1080)
..|.+.|.+.+.|
T Consensus 82 T~D~~~v~vd~~v 94 (266)
T cd03404 82 TGDENIVDVEFAV 94 (266)
T ss_pred eCCCCEEEEEEEE
Confidence 3444444444443
No 278
>PLN03188 kinesin-12 family protein; Provisional
Probab=32.97 E-value=3.1e+02 Score=37.54 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=20.6
Q ss_pred HHHHhhHHhhhHHHHHHH--HhhHHHHHHHHHHHHHH
Q 001419 325 DERRLTELGRRTVEIFVL--AHIFSNKIEVAYQEAVA 359 (1080)
Q Consensus 325 ee~~~~Elgrr~~~ifa~--~k~F~~ri~~Ay~E~~A 359 (1080)
-|+.|.|+=.-.+|+.++ ++|++| -+-++|++.
T Consensus 1090 ~eK~c~eel~~a~q~am~ghar~~e~--ya~l~ek~~ 1124 (1320)
T PLN03188 1090 TEKRCAEELKEAMQMAMEGHARMLEQ--YADLEEKHI 1124 (1320)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 577888888888887775 445543 223445543
No 279
>PRK12704 phosphodiesterase; Provisional
Probab=32.96 E-value=2.6e+02 Score=34.65 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=2.9
Q ss_pred ccceeeec
Q 001419 531 VPSVVMYG 538 (1080)
Q Consensus 531 ~~~~~~~g 538 (1080)
+|+-=|.|
T Consensus 216 lp~d~mkg 223 (520)
T PRK12704 216 LPNDEMKG 223 (520)
T ss_pred cCCchhhc
Confidence 33333333
No 280
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=32.92 E-value=35 Score=38.15 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=10.6
Q ss_pred ccchhHHHHHHHHHHh
Q 001419 277 MFVLVDDVLLLLERAA 292 (1080)
Q Consensus 277 ~fvl~~Dfq~~LEr~~ 292 (1080)
.|.+...|+.++.++.
T Consensus 42 ~fL~~~~L~~~i~~i~ 57 (264)
T PF05236_consen 42 PFLNPSPLQKRIQKIA 57 (264)
T ss_dssp --S-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH
Confidence 3567788888888884
No 281
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.75 E-value=3.8e+02 Score=36.50 Aligned_cols=14 Identities=29% Similarity=0.352 Sum_probs=6.0
Q ss_pred HhhhhhhhHHHHHh
Q 001419 403 NNRKGKEKKREERS 416 (1080)
Q Consensus 403 ~~rk~~ek~~ee~~ 416 (1080)
.+|..+|++++|++
T Consensus 1686 ~ar~rAe~L~~eA~ 1699 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAE 1699 (1758)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444443
No 282
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=32.69 E-value=2.2e+02 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 355 QEAVALKRQEELIREEEAAWLAESEQKAK 383 (1080)
Q Consensus 355 ~E~~A~~rQ~~Ll~E~E~e~~~e~er~~k 383 (1080)
.+...+...++||.|.+.-+..|+.|+.+
T Consensus 116 SD~HM~KVr~kLl~~~~~ie~~E~~rk~R 144 (271)
T PF05890_consen 116 SDEHMEKVRQKLLKEQKRIEASEEARKQR 144 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667778887776655555444433
No 283
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=32.60 E-value=2.9e+02 Score=32.01 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=5.2
Q ss_pred hhHHHHHH
Q 001419 334 RRTVEIFV 341 (1080)
Q Consensus 334 rr~~~ifa 341 (1080)
+|++|+..
T Consensus 219 ~~LV~~A~ 226 (379)
T COG5269 219 KRLVQIAK 226 (379)
T ss_pred HHHHHHHH
Confidence 46777766
No 284
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=32.22 E-value=82 Score=38.75 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHhcCCC
Q 001419 281 VDDVLLLLERAALEPL 296 (1080)
Q Consensus 281 ~~Dfq~~LEr~~LEpl 296 (1080)
.+-+..|||-. +||.
T Consensus 443 ~k~v~~~Leeg-~Dp~ 457 (591)
T KOG2505|consen 443 RKCVKYFLEEG-CDPS 457 (591)
T ss_pred HHHHHHHHHhc-CCch
Confidence 34456666665 6655
No 285
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.94 E-value=1.2e+02 Score=33.09 Aligned_cols=10 Identities=50% Similarity=0.674 Sum_probs=5.0
Q ss_pred HHHhcCCCCC
Q 001419 289 ERAALEPLPP 298 (1080)
Q Consensus 289 Er~~LEplp~ 298 (1080)
+|.-++..|.
T Consensus 56 lr~~~e~vp~ 65 (213)
T KOG4055|consen 56 LRAPLENVPE 65 (213)
T ss_pred HhcccccccH
Confidence 4445555554
No 286
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.91 E-value=6.9e+02 Score=27.04 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=8.7
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 001419 339 IFVLAHIFSNKIEVAYQEA 357 (1080)
Q Consensus 339 ifa~~k~F~~ri~~Ay~E~ 357 (1080)
+|+..+++..++..|-.++
T Consensus 18 ~~~~~~~~~~~~~~A~~~A 36 (201)
T PF12072_consen 18 YLVRKKINRKKLEQAEKEA 36 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3443444445555444443
No 287
>PLN02850 aspartate-tRNA ligase
Probab=31.90 E-value=40 Score=41.63 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=12.7
Q ss_pred CCCC-CCCCCcccccccchh
Q 001419 836 RIDP-NSVQSAFPFSMVTRD 854 (1080)
Q Consensus 836 r~~~-~s~~~gf~~g~~~~e 854 (1080)
|++. ...+|=-.|-|.-.|
T Consensus 302 RaE~s~t~RHl~EFt~Le~E 321 (530)
T PLN02850 302 RAEDSFTHRHLCEFTGLDLE 321 (530)
T ss_pred ccCCCCCCccchhhccchhh
Confidence 7776 466776677766665
No 288
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=31.66 E-value=68 Score=30.06 Aligned_cols=14 Identities=14% Similarity=-0.044 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 001419 364 EELIREEEAAWLAE 377 (1080)
Q Consensus 364 ~~Ll~E~E~e~~~e 377 (1080)
-+|.+|+|++++++
T Consensus 42 wkLaK~ie~~ere~ 55 (74)
T PF15086_consen 42 WKLAKAIEKEEREK 55 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777665543
No 289
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=31.62 E-value=2.1e+02 Score=30.12 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001419 389 KEKKAKKKLAKQKRNNRKGKEKKREER 415 (1080)
Q Consensus 389 kekk~~~k~akeee~~rk~~ek~~ee~ 415 (1080)
+||++-++++++-|++.|+.|+++|+.
T Consensus 80 ~~~~~~~~e~~~l~~~A~~~e~~~d~~ 106 (157)
T PF14235_consen 80 KEKARYKSEAEELEAKAKEAEAESDHA 106 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333344444444445455555554443
No 290
>PLN02381 valyl-tRNA synthetase
Probab=31.60 E-value=53 Score=43.83 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhccCCChhhhhhh
Q 001419 376 AESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLEDENPSDEKKEFI 437 (1080)
Q Consensus 376 ~e~er~~kk~~k~kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~~~ee~~~~~~~~~~ 437 (1080)
++-|||.||.+|.|||..++-.|++++.+.|.+.+++. ...+...+..+.+++.+-++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (1066)
T PLN02381 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQAS--DGTNVPKKSEKKSRKRDVEDEN 75 (1066)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcccchhhhhhhhhhhcc
No 291
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=31.43 E-value=5.6e+02 Score=25.85 Aligned_cols=6 Identities=50% Similarity=0.595 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001419 365 ELIREE 370 (1080)
Q Consensus 365 ~Ll~E~ 370 (1080)
+|-+|-
T Consensus 52 ElKeEK 57 (108)
T PF03879_consen 52 ELKEEK 57 (108)
T ss_pred HHHHHH
Confidence 333333
No 292
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=31.36 E-value=5.2e+02 Score=25.46 Aligned_cols=15 Identities=0% Similarity=0.131 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001419 348 NKIEVAYQEAVALKR 362 (1080)
Q Consensus 348 ~ri~~Ay~E~~A~~r 362 (1080)
++++....+.+....
T Consensus 67 ~~f~~~l~~~i~~q~ 81 (141)
T TIGR02473 67 QRFIRQLDQRIQQQQ 81 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 293
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=30.68 E-value=29 Score=45.12 Aligned_cols=8 Identities=63% Similarity=0.667 Sum_probs=4.9
Q ss_pred cccCCccc
Q 001419 7 EESGVGRS 14 (1080)
Q Consensus 7 ~~~~~g~s 14 (1080)
+||..|||
T Consensus 124 ~es~d~rs 131 (982)
T PF03154_consen 124 GESSDGRS 131 (982)
T ss_pred cccccccc
Confidence 34666776
No 294
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=30.48 E-value=40 Score=41.79 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=10.8
Q ss_pred CCCCCC-CCCcccccccchh
Q 001419 836 RIDPNS-VQSAFPFSMVTRD 854 (1080)
Q Consensus 836 r~~~~s-~~~gf~~g~~~~e 854 (1080)
|++... .+|=-.|-|.-.|
T Consensus 290 RaE~s~T~RHl~EFt~Le~E 309 (550)
T PTZ00401 290 RSENSNTHRHLTEFVGLDVE 309 (550)
T ss_pred eCCCCCCCCCccchhhhhhh
Confidence 666553 4666566555554
No 295
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.27 E-value=5e+02 Score=29.35 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=3.9
Q ss_pred HHhhhhhhhH
Q 001419 402 RNNRKGKEKK 411 (1080)
Q Consensus 402 e~~rk~~ek~ 411 (1080)
+.+||.-+..
T Consensus 129 ~~nrk~~~~~ 138 (233)
T KOG4739|consen 129 ENNRKKLQAS 138 (233)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 296
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=30.17 E-value=1.1e+02 Score=37.18 Aligned_cols=7 Identities=29% Similarity=0.581 Sum_probs=2.9
Q ss_pred ccccCCC
Q 001419 465 AEVLQPD 471 (1080)
Q Consensus 465 ~e~~~~d 471 (1080)
.|.+++|
T Consensus 356 v~~i~LD 362 (586)
T KOG2223|consen 356 VELIKLD 362 (586)
T ss_pred hhheeec
Confidence 3444443
No 297
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=29.43 E-value=8e+02 Score=27.24 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001419 354 YQEAVALKRQEELIREE 370 (1080)
Q Consensus 354 y~E~~A~~rQ~~Ll~E~ 370 (1080)
.++.++..-...++.++
T Consensus 77 ~H~~la~~L~~ev~~~l 93 (239)
T cd07658 77 IHRNLGSALTEEAIKPL 93 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 298
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=29.39 E-value=1.5e+02 Score=30.74 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=11.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 343 AHIFSNKIEVAYQEAVALKRQEELIREE 370 (1080)
Q Consensus 343 ~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~ 370 (1080)
+.||= -=|-.+++...|.+=++++
T Consensus 26 gYiLl----RPY~~kl~~k~~~kq~eke 49 (140)
T PF07543_consen 26 GYILL----RPYFRKLAAKDQKKQLEKE 49 (140)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 66663 2344455555555444433
No 299
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=29.28 E-value=9.3e+02 Score=28.68 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=23.0
Q ss_pred HHHHhhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 325 DERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLA 376 (1080)
Q Consensus 325 ee~~~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~ 376 (1080)
.+....|+.++.+.. .++++.+...--+|+ ..+| .|++-+++..++
T Consensus 33 ~~~d~~e~~~~v~~~---~kvlq~k~~t~~kek--~~~Q-~l~kt~larsKL 78 (391)
T KOG1850|consen 33 SEKDNAELKIKVLDY---DKVLQVKDLTEKKEK--RNNQ-ILLKTELARSKL 78 (391)
T ss_pred HHHhHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHH
Confidence 566677888776654 344543333333333 3445 444444444433
No 300
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=73 Score=38.24 Aligned_cols=6 Identities=67% Similarity=0.800 Sum_probs=2.3
Q ss_pred cccccc
Q 001419 167 FMELSK 172 (1080)
Q Consensus 167 FIswdd 172 (1080)
|-.+.+
T Consensus 198 FPEL~k 203 (498)
T KOG2573|consen 198 FPELVK 203 (498)
T ss_pred cHHHHH
Confidence 433333
No 301
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.11 E-value=2.7e+02 Score=31.02 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001419 362 RQEELIREE 370 (1080)
Q Consensus 362 rQ~~Ll~E~ 370 (1080)
|-..||+++
T Consensus 115 R~~~ll~~l 123 (216)
T KOG1962|consen 115 RLHTLLREL 123 (216)
T ss_pred HHHHHHHHH
Confidence 333333333
No 302
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=28.66 E-value=18 Score=40.32 Aligned_cols=27 Identities=11% Similarity=-0.069 Sum_probs=22.1
Q ss_pred hhhHHHhHHHHhhhhhccccccccccc
Q 001419 230 EVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 230 nvLAT~YMnSLLqgLy~Le~Fres~Ks 256 (1080)
+.+..||.|||||.||++..+++....
T Consensus 5 n~~~nsY~NslLQ~l~f~~~~r~~~l~ 31 (295)
T PF13423_consen 5 NHIPNSYCNSLLQVLYFIPPLRNFLLS 31 (295)
T ss_pred CCCCcchHHHHHHHHHhCHHHHHHHHh
Confidence 445579999999999999999865444
No 303
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=28.65 E-value=6.3e+02 Score=25.57 Aligned_cols=17 Identities=0% Similarity=-0.005 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001419 348 NKIEVAYQEAVALKRQE 364 (1080)
Q Consensus 348 ~ri~~Ay~E~~A~~rQ~ 364 (1080)
+.+...+.++|....+.
T Consensus 70 ~~fl~~L~~~i~~q~~~ 86 (146)
T PRK07720 70 QQFVTNLERTIDHYQLL 86 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556666666554444
No 304
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.63 E-value=1.1e+02 Score=33.53 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=3.9
Q ss_pred CCCCCCcccc
Q 001419 459 DSVDGGAEVL 468 (1080)
Q Consensus 459 d~~d~~~e~~ 468 (1080)
-++|+..-||
T Consensus 143 rniDdAl~vL 152 (221)
T KOG3223|consen 143 RNIDDALAVL 152 (221)
T ss_pred ccHHHHHHHH
Confidence 3344433333
No 305
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=28.53 E-value=2.8e+02 Score=35.58 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 348 NKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKR 384 (1080)
Q Consensus 348 ~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk 384 (1080)
.+|-++++|.=|+.+++|=|+++-+......|.++|.
T Consensus 416 kKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkd 452 (961)
T KOG4673|consen 416 KKVQALTKERDALRREQKSLKKELAAALLKDELAEKD 452 (961)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4556789999999999998888777776665544444
No 306
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=28.53 E-value=1.1e+02 Score=32.02 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=4.8
Q ss_pred HhhhhhhhHHHH
Q 001419 403 NNRKGKEKKREE 414 (1080)
Q Consensus 403 ~~rk~~ek~~ee 414 (1080)
++|++++.+.+.
T Consensus 24 ~~r~eA~~~~~l 35 (151)
T PF11875_consen 24 EKRAEAESAIEL 35 (151)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 307
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.42 E-value=5.3e+02 Score=27.48 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=24.4
Q ss_pred HHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 339 IFVLAHIF----SNKIEVAYQEAVALKRQEELIREEEA 372 (1080)
Q Consensus 339 ifa~~k~F----~~ri~~Ay~E~~A~~rQ~~Ll~E~E~ 372 (1080)
+.-+.++| +.-|+.||.++.....+..+++|.|.
T Consensus 64 L~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 64 LAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33458888 67899999998766666666666554
No 308
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=28.40 E-value=2.2e+02 Score=31.19 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=10.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 001419 336 TVEIFVLAHIFSNKIEVAYQEAVAL 360 (1080)
Q Consensus 336 ~~~ifa~~k~F~~ri~~Ay~E~~A~ 360 (1080)
+|+++.+--++..++...+...++.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~~~~a~ 29 (192)
T COG3334 5 KLEGLLLLILIPSRFLLLLASAFAL 29 (192)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444443333334444444444433
No 309
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.22 E-value=4e+02 Score=35.36 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=16.3
Q ss_pred ccccccccc-cccc---cCCeEEEEEEEEEE
Q 001419 166 KFMELSKVS-DGFK---DGDTLIIKAQVQVI 192 (1080)
Q Consensus 166 kFIswddLe-sGFL---VDDsLtIEc~VkVi 192 (1080)
.||.+.+-. +-|. +|+.|.-.|.|+|+
T Consensus 680 dfmRrpDr~fdPFse~~VdgvIA~t~sV~VI 710 (1189)
T KOG1265|consen 680 DFMRRPDRQFDPFSESPVDGVIAATLSVTVI 710 (1189)
T ss_pred HHhhCCCcCcCCcccCcccceEEeeEEEEEE
Confidence 566555443 4443 46777777777776
No 310
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.00 E-value=1.9e+02 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=12.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001419 343 AHIFSNKIEVAYQEAVALKRQEELIRE 369 (1080)
Q Consensus 343 ~k~F~~ri~~Ay~E~~A~~rQ~~Ll~E 369 (1080)
...|. +-+.|-.|-|+.+.|.+-|+.
T Consensus 51 g~~f~-krE~A~E~~Y~r~~EkEqL~~ 76 (100)
T PF04568_consen 51 GGAFG-KREAAQEEQYFRKKEKEQLKK 76 (100)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-hHHHhhHHHHHHHHHHHHHHH
Confidence 44553 445555555554444444333
No 311
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=27.85 E-value=63 Score=40.78 Aligned_cols=31 Identities=39% Similarity=0.532 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhh
Q 001419 389 KEKKAKKKLAKQKRNNRKGKEKKREERSSMA 419 (1080)
Q Consensus 389 kekk~~~k~akeee~~rk~~ek~~ee~~~~~ 419 (1080)
.+||.++|+.|+++|+.||++++.++..+.+
T Consensus 585 e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~ 615 (700)
T KOG1156|consen 585 EEKKIKKKQRKAKKKAKKEAKKKKDKKKKEA 615 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4666667777777777777776666554444
No 312
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.68 E-value=2.3e+02 Score=30.95 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhhhhh
Q 001419 391 KKAKKKLAKQKRNNRKGKEKKREERSSMAL 420 (1080)
Q Consensus 391 kk~~~k~akeee~~rk~~ek~~ee~~~~~~ 420 (1080)
|.+..+.+.+=++-||-.+|++++..+.+.
T Consensus 60 kd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~ 89 (195)
T PRK14148 60 KDEALRAKAEMENIRKRAERDVSNARKFGI 89 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666666555553
No 313
>PHA01750 hypothetical protein
Probab=27.43 E-value=2.6e+02 Score=26.06 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001419 338 EIFVLAHIFSNKIEVAYQEAVALKRQEEL 366 (1080)
Q Consensus 338 ~ifa~~k~F~~ri~~Ay~E~~A~~rQ~~L 366 (1080)
-+|+...++- +|+.++++++-+-.|.+|
T Consensus 17 tlFaIiqlYl-KIKq~lkdAvkeIV~~EL 44 (75)
T PHA01750 17 TLFAIIQLYL-KIKQALKDAVKEIVNSEL 44 (75)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3677777774 899999999988888765
No 314
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.29 E-value=3.9e+02 Score=35.44 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=8.0
Q ss_pred eEEEEEEEEEEe
Q 001419 129 SHFAQFTIAVVN 140 (1080)
Q Consensus 129 SI~AqFtL~LLN 140 (1080)
.|.+...++|++
T Consensus 700 vIA~t~sV~VIS 711 (1189)
T KOG1265|consen 700 VIAATLSVTVIS 711 (1189)
T ss_pred eEEeeEEEEEEe
Confidence 456667777776
No 315
>PLN03237 DNA topoisomerase 2; Provisional
Probab=26.63 E-value=1.7e+02 Score=40.46 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCCCC
Q 001419 282 DDVLLLLERAALEPLPP 298 (1080)
Q Consensus 282 ~Dfq~~LEr~~LEplp~ 298 (1080)
.+++..|+....++.|.
T Consensus 1060 ~~l~~~L~~~gf~~~~~ 1076 (1465)
T PLN03237 1060 ADLVEELRQKGFTPFPK 1076 (1465)
T ss_pred HHHHHHHHHcCCCccch
Confidence 46666666666666553
No 316
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.62 E-value=2.4e+02 Score=36.29 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=40.8
Q ss_pred CCcCCCCCCCCCCC--CCC---CC--Cccceeeccc-hhhhhhc-cccccCCCCCCCCCCCCCccccc
Q 001419 731 PNMSRPSSAPLVPG--PRP---TA--PVVSVVHTAP-LLARSVS-AAGRLGPDLAPATHGYIPQSYRN 789 (1080)
Q Consensus 731 ~~~sRPsSAP~~p~--pr~---t~--p~~s~vq~~p-lLsRS~s-a~gr~g~dps~~~~sy~pqsYrn 789 (1080)
+.-.|++|+|+-|. |.+ |. |++.+-++++ +-+|.+= -.+|..|-+++-+|.|+-+.-||
T Consensus 498 t~~~rtssspvmpv~lp~~s~~ty~~~~v~a~~~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~ 565 (825)
T KOG0267|consen 498 TVPERTSSSPVMPVILPQASMSTYPEPPVGASSTARTSSARILPVTFNQANNISSEEAPVTLRRQRRN 565 (825)
T ss_pred ccccccccCCccccccCCCcccccCCCCccccCcccccccccccccccccccccCcCCccccccccCC
Confidence 35679999998776 222 22 3455556644 4456666 36788888888899999888887
No 317
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=26.50 E-value=1.6e+02 Score=30.54 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 001419 346 FSNKIEVAY 354 (1080)
Q Consensus 346 F~~ri~~Ay 354 (1080)
.++||..||
T Consensus 85 Vr~rIirAF 93 (135)
T PTZ00074 85 VRDRIVRAF 93 (135)
T ss_pred HHHHHHHHH
Confidence 345555554
No 318
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=8.6e+02 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=4.9
Q ss_pred cCCCCccCCCcc
Q 001419 500 VCNLSSVPNGVT 511 (1080)
Q Consensus 500 ~~~~~~~~n~~~ 511 (1080)
+.++-+..|.+.
T Consensus 207 L~gl~~a~s~vr 218 (246)
T KOG4657|consen 207 LQGLTSAISAVR 218 (246)
T ss_pred cccHHHHHHHhh
Confidence 444444444433
No 319
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.40 E-value=2.9e+02 Score=34.19 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=8.4
Q ss_pred ccCCCCCCCCCccc
Q 001419 440 DAQPLPEKPDVLED 453 (1080)
Q Consensus 440 ~~~~~~~k~d~~e~ 453 (1080)
.-+++..+...||.
T Consensus 379 ~l~~~~~~~~~le~ 392 (582)
T PF09731_consen 379 KLAELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455566677776
No 320
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.31 E-value=4.5e+02 Score=32.63 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=3.7
Q ss_pred Cccceeeec
Q 001419 530 SVPSVVMYG 538 (1080)
Q Consensus 530 s~~~~~~~g 538 (1080)
.+|+-=|.|
T Consensus 209 ~lp~d~~kg 217 (514)
T TIGR03319 209 NLPNDEMKG 217 (514)
T ss_pred EcCChhhhc
Confidence 344333444
No 321
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=26.22 E-value=1.9e+02 Score=27.94 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhcc
Q 001419 375 LAESEQKAKRG--AAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLEDE 427 (1080)
Q Consensus 375 ~~e~er~~kk~--~k~kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~~~ee 427 (1080)
.++.|++|++. +.++++..+.++|++|-...-+.=+...|+.-+..+.+...+
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~ 63 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGE 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 322
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=23 Score=44.98 Aligned_cols=16 Identities=44% Similarity=0.420 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001419 387 AEKEKKAKKKLAKQKR 402 (1080)
Q Consensus 387 k~kekk~~~k~akeee 402 (1080)
..|.|++.++.+||++
T Consensus 793 t~kakar~k~~~~ek~ 808 (929)
T KOG2062|consen 793 TAKAKARAKKEAKEKE 808 (929)
T ss_pred hhhhhhhhhhhhhhcc
Confidence 3355555555555543
No 323
>PRK12705 hypothetical protein; Provisional
Probab=25.86 E-value=1.9e+02 Score=35.96 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=29.4
Q ss_pred cccccCCCCcccCCCccceeeecCccCCCccccccccCCCCCCCCCC-CcccCCCcccccccCCCCC
Q 001419 516 ASVMDDSSSTCSTDSVPSVVMYGPYKGNSLANYQNQKSPSRGKNQRG-KSTYDGNVWATETENQPSR 581 (1080)
Q Consensus 516 ~s~~~~~sstcs~ds~~~~~~~g~~~~~~~~~~~~~~s~~rg~~~~~-~~~~~~~~~~~~~~~~ps~ 581 (1080)
..+|.--++-|.++..-+||-=. | -.-|..==|+.-|| |.....|+-.--.||.|..
T Consensus 183 ~~aiqr~a~~~~~e~tvs~v~lp--------~-demkGriIGreGrNir~~E~~tGvdliiddtp~~ 240 (508)
T PRK12705 183 AQAMQRIASETASDLSVSVVPIP--------S-DAMKGRIIGREGRNIRAFEGLTGVDLIIDDTPEA 240 (508)
T ss_pred HHHHHHhccchhhhheeeeeecC--------C-hHhhccccCccchhHHHHHHhhCCceEecCCccc
Confidence 45666667777777766555211 1 01122233566566 3444444444456666655
No 324
>PRK00106 hypothetical protein; Provisional
Probab=25.84 E-value=5.4e+02 Score=32.30 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=9.8
Q ss_pred CCCCCC-CcccCCCcccccccCCCC
Q 001419 557 GKNQRG-KSTYDGNVWATETENQPS 580 (1080)
Q Consensus 557 g~~~~~-~~~~~~~~~~~~~~~~ps 580 (1080)
||.-|| |....-|+..--.|+-|.
T Consensus 242 GreGrNir~~E~~tGvdliiddtp~ 266 (535)
T PRK00106 242 GREGRNIRTLESLTGIDVIIDDTPE 266 (535)
T ss_pred CCCcchHHHHHHHhCceEEEcCCCC
Confidence 444444 333333333333455554
No 325
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=5.2e+02 Score=30.98 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=7.6
Q ss_pred cccCCCCCCCCc
Q 001419 454 VSDVSDSVDGGA 465 (1080)
Q Consensus 454 ~sd~sd~~d~~~ 465 (1080)
-+-+.+..||-+
T Consensus 263 ~~~~~~~~D~~s 274 (390)
T KOG0551|consen 263 PHGLRLSLDGQS 274 (390)
T ss_pred ccccccccCCcc
Confidence 466677777743
No 326
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=25.61 E-value=3.4e+02 Score=32.87 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001419 387 AEKEKKAKKKLAKQ 400 (1080)
Q Consensus 387 k~kekk~~~k~ake 400 (1080)
.+.|+.+...+|+.
T Consensus 279 A~gea~~ii~~AeA 292 (419)
T PRK10930 279 ANGQAQRILEEARA 292 (419)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 327
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.55 E-value=1.8e+02 Score=37.20 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=12.6
Q ss_pred CCCcCCCCccCCCccccc
Q 001419 497 SSGVCNLSSVPNGVTEKR 514 (1080)
Q Consensus 497 ~~~~~~~~~~~n~~~~k~ 514 (1080)
..|+.++--|+|+...++
T Consensus 373 ~~gl~~mkFMk~a~erk~ 390 (735)
T PF04615_consen 373 KKGLMSMKFMKRAEERKK 390 (735)
T ss_pred hhhccchHHHHhhHHhHH
Confidence 467777777777777664
No 328
>PF03538 VRP1: Salmonella virulence plasmid 28.1kDa A protein; InterPro: IPR018003 This entry included insecticidal toxin complex proteins (TcaA, TccA, TcbA, TcdA) from Photorhabdus luminescens subsp. laumondii and Xenorhabdus nematophilus (Achromobacter nematophilus) [], and virulence proteins from Salmonella typhimurium that are encoded on a 90kb plasmid. P. luminescens and X. nematophilus are Gram-negative bacteria that form entomopathogenic symbioses with soil nematodes. The bacteria are found in the gut of entomopathogenic nematodes that invade and kill insects. When the nematode invades an insect host the bacteria are released into the insect haemocoel (the open circulatory system), both the bacteria and the nematode undergo multiple rounds of replication which kills the insect host. Mapping of the insecticidal toxin loci and studies on knockout mutants in P. luminescens showed that deletion of either tca or tcd loci dramatically reduced toxicity, while the double mutant tca/tcd abolished toxicity []. However the biology of toxin action is unclear as is the species range of insects the toxins are active against. S. typhimurium contains a 90kb plasmid that is associated with virulence. This plasmid encodes at least 6 genes needed by the bacterium for invading host macrophages during infection. These include the 70kDa mkaA protein [], a recognised virulence factor, and more recently described, four spv genes under the control of a regulator []. Deletion studies on the virulence plasmid have shown that an open reading frame encoding a 28kDa protein was needed for successful invasion of the host. This protein, designated mkfA [], VRP4 [] or VirA [] by different groups, is utilised by the microbe upon entry into macrophages, although the exact mechanism is unclear.
Probab=25.39 E-value=26 Score=40.78 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=32.0
Q ss_pred cccccCCchhhhhhhhcccc--c---ccccccccccccccCCCCccccccccCCC
Q 001419 918 VLVDEFPHLDIINDLLDDEH--G---VGMAAGASTVLQSLSNGPHTLNRQFSFPR 967 (1080)
Q Consensus 918 ~v~dEFPHLDIINDLL~eeq--~---~g~~~~~~~~~~~~~~~~~~f~~~fs~~g 967 (1080)
-|-.|-|.|||+|++|+.-- - .|.. .-.+.+.|..-+..|.+||.+|-
T Consensus 171 n~~~~vp~L~ivNevL~~~i~~~~~~~~~~--~~~v~~~La~~~~p~~LPY~~~~ 223 (325)
T PF03538_consen 171 NMNTEVPTLDIVNEVLESAIKAYLDQTGDT--RKSVYQALATARYPFTLPYHDPH 223 (325)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHhcccCCcc--hhHHHHHHHhccCCCCCCCccHH
Confidence 46778899999999997410 0 1211 11456667666777888887765
No 329
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.92 E-value=2.6e+02 Score=30.85 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=5.9
Q ss_pred CCCCCCccccCCCC
Q 001419 459 DSVDGGAEVLQPDS 472 (1080)
Q Consensus 459 d~~d~~~e~~~~d~ 472 (1080)
|.--+.+-+|.++.
T Consensus 121 ~~esS~~p~l~te~ 134 (217)
T KOG4709|consen 121 DLESSGAPLLGTEP 134 (217)
T ss_pred cccccccccccccC
Confidence 33334444554443
No 330
>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
Probab=24.73 E-value=4.4e+02 Score=30.28 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.7
Q ss_pred eeccccc-hhHHHHHHHHHHhcC
Q 001419 273 VENDMFV-LVDDVLLLLERAALE 294 (1080)
Q Consensus 273 v~~d~fv-l~~Dfq~~LEr~~LE 294 (1080)
+.+...| .++.+++|=+++.+-
T Consensus 7 ~~g~~LV~~~~av~~LRk~~gI~ 29 (290)
T KOG4133|consen 7 ANGRSLVFDAEAVQALRKRLGIG 29 (290)
T ss_pred ccCCceeecHHHHHHHHHhcCcc
Confidence 3444444 689999999998655
No 331
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.62 E-value=6.3e+02 Score=32.78 Aligned_cols=11 Identities=0% Similarity=0.214 Sum_probs=6.5
Q ss_pred eeeeehhhhhH
Q 001419 223 KHFFIEKEVTS 233 (1080)
Q Consensus 223 kKFyVsKnvLA 233 (1080)
.+||+.=+.|.
T Consensus 379 ~ryy~~H~~Gv 389 (717)
T PF10168_consen 379 DRYYCYHNAGV 389 (717)
T ss_pred ceEEEEecCcc
Confidence 66666655553
No 332
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=24.56 E-value=2.7e+02 Score=30.25 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 001419 363 QEELIREE 370 (1080)
Q Consensus 363 Q~~Ll~E~ 370 (1080)
|.+.|+++
T Consensus 115 qL~~l~~~ 122 (212)
T cd08045 115 QLRFLEQL 122 (212)
T ss_pred HHHHHHHH
Confidence 33444433
No 333
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=24.24 E-value=2.2e+02 Score=36.56 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHhhHHhhhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001419 326 ERRLTELGRRTVEIFVLAHIF-----SNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQ 400 (1080)
Q Consensus 326 e~~~~Elgrr~~~ifa~~k~F-----~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~ake 400 (1080)
++-|+- +.-+.+++-.+|-+ ..+-.+-..-.-++.||.+|-+|..+.+.+.+++++++..+. +..-..|.+
T Consensus 418 ~~vCPs-~Iplv~~~r~aK~~i~~~~~~~~~a~~ar~r~e~r~~R~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~ 493 (695)
T PRK05035 418 AYVCPS-NIPLVQYYRQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKD---KDAVAAALA 493 (695)
T ss_pred cccCCC-CCcHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---cchhHHHHH
Q ss_pred HHHhhhhhhh-----------------HHHHHhhhhhhhhhhccCCChhhhhhhhcccCCCC
Q 001419 401 KRNNRKGKEK-----------------KREERSSMALSDRLEDENPSDEKKEFIVEDAQPLP 445 (1080)
Q Consensus 401 ee~~rk~~ek-----------------~~ee~~~~~~e~~~~ee~~~~~~~~~~~~~~~~~~ 445 (1080)
.-++++..+. ++.++++++..+++.+.+.....+..+.+-|-.++
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kka~vaAAia 555 (695)
T PRK05035 494 RVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIA 555 (695)
T ss_pred HHHhhhhccccccccccccCCchHHHHHHHHHHHHHHHhhcccCCcccccccchhhhhHHHh
No 334
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=24.11 E-value=1.6e+02 Score=36.84 Aligned_cols=26 Identities=31% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001419 365 ELIREEEAAWLAESEQKAKRGAAEKE 390 (1080)
Q Consensus 365 ~Ll~E~E~e~~~e~er~~kk~~k~ke 390 (1080)
.-|+++|.-.++|+||+..++++++.
T Consensus 430 ~QLrflEqldk~E~Erk~~~ere~l~ 455 (563)
T KOG2341|consen 430 RQLRFLEQLDKAEEERKESREREELL 455 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666555554433
No 335
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.04 E-value=5e+02 Score=33.59 Aligned_cols=8 Identities=38% Similarity=0.646 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 001419 378 SEQKAKRG 385 (1080)
Q Consensus 378 ~er~~kk~ 385 (1080)
+|||+|++
T Consensus 513 eErk~r~~ 520 (697)
T PF09726_consen 513 EERKARKE 520 (697)
T ss_pred HHHHHHhH
Confidence 34444433
No 336
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.90 E-value=1e+02 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001419 362 RQEELIREEEAAWLAESE 379 (1080)
Q Consensus 362 rQ~~Ll~E~E~e~~~e~e 379 (1080)
.|++|++-+||=+|+|+|
T Consensus 65 kq~eL~~rqeEL~Rke~E 82 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQE 82 (313)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555444444443
No 337
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=23.85 E-value=1.5e+02 Score=33.26 Aligned_cols=7 Identities=57% Similarity=0.757 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 001419 365 ELIREEE 371 (1080)
Q Consensus 365 ~Ll~E~E 371 (1080)
.||+|||
T Consensus 150 ~Ll~ELe 156 (244)
T PF04889_consen 150 ALLRELE 156 (244)
T ss_pred HHHHHHH
Confidence 3455553
No 338
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.84 E-value=2e+02 Score=29.69 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001419 395 KKLAKQ 400 (1080)
Q Consensus 395 ~k~ake 400 (1080)
.++.+|
T Consensus 106 ~k~~re 111 (132)
T PF11208_consen 106 SKEQRE 111 (132)
T ss_pred HHHHHH
Confidence 333333
No 339
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=23.70 E-value=7.4e+02 Score=30.34 Aligned_cols=6 Identities=17% Similarity=-0.363 Sum_probs=2.2
Q ss_pred hhhhhc
Q 001419 434 KEFIVE 439 (1080)
Q Consensus 434 ~~~~~~ 439 (1080)
+.+-.+
T Consensus 456 ~~RH~e 461 (672)
T KOG4722|consen 456 EIRHGE 461 (672)
T ss_pred HHhhhc
Confidence 333333
No 340
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.26 E-value=5.4e+02 Score=30.70 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 001419 349 KIEVAYQEAVALKRQE---ELIREEEAAWLAESEQKAKRGA 386 (1080)
Q Consensus 349 ri~~Ay~E~~A~~rQ~---~Ll~E~E~e~~~e~er~~kk~~ 386 (1080)
-|..|+.|++-..+++ .|..|.|.=+|.++|-+.=+++
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~k 250 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQK 250 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 4456677766544443 3344444444555544433333
No 341
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=23.21 E-value=3.2e+02 Score=31.01 Aligned_cols=45 Identities=24% Similarity=0.181 Sum_probs=27.5
Q ss_pred hhHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001419 329 LTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQE-ELIREEEAAW 374 (1080)
Q Consensus 329 ~~Elgrr~~~ifa~~k~F~~ri~~Ay~E~~A~~rQ~-~Ll~E~E~e~ 374 (1080)
+-++|=|.+.+--|..++ .+++++-++-=+.+.|+ .+..|||-|+
T Consensus 163 ~~~e~L~~LS~seL~~ll-~e~E~~Ir~ySEeLV~qLA~RDELefEK 208 (244)
T PF07763_consen 163 SYEEGLRQLSLSELNELL-EEMETAIREYSEELVQQLALRDELEFEK 208 (244)
T ss_pred CcHHHHHhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667666666666 47777766665555555 4444554443
No 342
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=23.19 E-value=57 Score=34.92 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001419 389 KEKKAKKKLAKQKR 402 (1080)
Q Consensus 389 kekk~~~k~akeee 402 (1080)
.++|+.+++++++.
T Consensus 23 ~drKeak~~~R~~~ 36 (170)
T PF11241_consen 23 EDRKEAKKRAREAR 36 (170)
T ss_pred ccHHHHHHHHHHHH
Confidence 34444444444433
No 343
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=23.03 E-value=2e+02 Score=34.14 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001419 387 AEKEKKAKKKLAKQKRNNR 405 (1080)
Q Consensus 387 k~kekk~~~k~akeee~~r 405 (1080)
.+|..|.+++..||+|+.+
T Consensus 331 ~eka~kiqe~~skqrek~e 349 (377)
T KOG1945|consen 331 REKARKIQEKESKQREKLE 349 (377)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3444444444455544433
No 344
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=22.98 E-value=5.2e+02 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001419 356 EAVALKRQEELIREEEAAWLAESEQKAKRG 385 (1080)
Q Consensus 356 E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~ 385 (1080)
+--.++...+||.|-.+.++.|+-|+.+..
T Consensus 179 D~HMqKVr~~Li~eq~~ke~sE~ark~Rel 208 (328)
T KOG3080|consen 179 DEHMQKVRQRLIKEQTAKERSEEARKQREL 208 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899888777766655544433
No 345
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.87 E-value=1.6e+02 Score=37.45 Aligned_cols=22 Identities=0% Similarity=-0.052 Sum_probs=11.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 001419 343 AHIFSNKIEVAYQEAVALKRQE 364 (1080)
Q Consensus 343 ~k~F~~ri~~Ay~E~~A~~rQ~ 364 (1080)
.++|++|...+.-+.+....=.
T Consensus 369 ~~llK~rn~~v~~~~~~~~lsL 390 (704)
T KOG2153|consen 369 NSLLKTRNYEVLPDMITTFLSL 390 (704)
T ss_pred HHHhhhhcccchhhHHHHHHhc
Confidence 4566655555555554444333
No 346
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=6.8e+02 Score=28.06 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 001419 348 NKIEVAYQEAV 358 (1080)
Q Consensus 348 ~ri~~Ay~E~~ 358 (1080)
.|...+|+++-
T Consensus 114 kr~~~~y~~ak 124 (250)
T KOG1150|consen 114 KRCLDVYTAAK 124 (250)
T ss_pred HHHHHHHHHHH
Confidence 45556666653
No 347
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.51 E-value=7.8e+02 Score=33.74 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=17.9
Q ss_pred EEEcCcccccCCeeeCCcEEeCCeEEEEEEEeCCCC
Q 001419 72 WRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCD 107 (1080)
Q Consensus 72 WkIeNFSkLkke~I~Sp~FevGG~~WRIlVYPrGn~ 107 (1080)
.++.||-...++.+-.| | --.|...+-|+|.+
T Consensus 89 i~~~NFKSYaG~~ilGP-F---HksFtaIvGPNGSG 120 (1293)
T KOG0996|consen 89 IVVENFKSYAGKQILGP-F---HKSFTAIVGPNGSG 120 (1293)
T ss_pred hhhhhhhhhcCceeecC-C---CCCceeeECCCCCC
Confidence 45666666555433222 2 23467777898865
No 348
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=22.48 E-value=2.8e+02 Score=34.80 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=31.9
Q ss_pred HHHhHHHHhhhh--hccccccccccccceeccCCCCCCCceEeeccccchhHHHHHHHHHHhcCC
Q 001419 233 STLVMDSLYSGL--KALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEP 295 (1080)
Q Consensus 233 AT~YMnSLLqgL--y~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Dfq~~LEr~~LEp 295 (1080)
|.-|++-|++-= +|+..|+=++...+-... -+|.-|. ..++..+||+=++|.
T Consensus 205 a~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eH--------cyis~DY---~eei~~~l~~d~~d~ 258 (645)
T KOG0681|consen 205 AGDYLSRLMQLKYPFHLNAFTGSKAERLLHEH--------CYISPDY---REEIIKILEMDYYDE 258 (645)
T ss_pred HHHHHHHHHhccCccchhhcCHHHHHHHhhhh--------ceeCcch---HHHHHHHhhhhhhhc
Confidence 678999987654 677777744433322111 2233222 578888999877774
No 349
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=30 Score=40.15 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=26.9
Q ss_pred hhhhHHHhHHHHhhhhhccccccccc--cccceeccCCC
Q 001419 229 KEVTSTLVMDSLYSGLKALEGQSKSK--KTKAKLLDAED 265 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~Le~Fres~--Ks~i~l~DtDe 265 (1080)
+|.+-||||||.||.|..+.....-+ +.-+.+|.||.
T Consensus 75 ~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~ 113 (415)
T COG5533 75 RNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDF 113 (415)
T ss_pred cccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCC
Confidence 99999999999999998887776421 22345556554
No 350
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=22.24 E-value=7.2e+02 Score=25.15 Aligned_cols=6 Identities=50% Similarity=0.490 Sum_probs=2.5
Q ss_pred HHHHHH
Q 001419 365 ELIREE 370 (1080)
Q Consensus 365 ~Ll~E~ 370 (1080)
+.|++.
T Consensus 21 ~~IeeA 26 (108)
T COG2811 21 EEIEEA 26 (108)
T ss_pred HHHHHH
Confidence 344443
No 351
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=22.22 E-value=1.9e+02 Score=27.43 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 001419 364 EELIREEEAAWLA 376 (1080)
Q Consensus 364 ~~Ll~E~E~e~~~ 376 (1080)
++||.|.|+..+.
T Consensus 45 e~iL~eie~~k~~ 57 (79)
T PF08701_consen 45 EEILKEIEEKKER 57 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3556666654443
No 352
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.22 E-value=3.8e+02 Score=32.77 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 001419 360 LKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKK 411 (1080)
Q Consensus 360 ~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~~rk~~ek~ 411 (1080)
--.|+|-+-|.-++++++--+..||.+ |+|+.+.|+++|-|.+=+|+|+.
T Consensus 24 GvKqMK~~Mek~eeeh~~Lm~tL~k~k--k~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 24 GVKQMKTMMEKTEEEHKELMKTLEKSK--KEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777776666666666554 34444666777766655555543
No 353
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=22.18 E-value=52 Score=34.64 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=16.3
Q ss_pred hhhhHHHhHHHHhhhhhc
Q 001419 229 KEVTSTLVMDSLYSGLKA 246 (1080)
Q Consensus 229 KnvLAT~YMnSLLqgLy~ 246 (1080)
+|.+.+|||||.+|.|.+
T Consensus 3 ~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 3 RNLGNTCYMNSILQCLSA 20 (230)
T ss_pred cccCcchhhhHHHHHHHH
Confidence 678889999999999987
No 354
>PF13300 DUF4078: Domain of unknown function (DUF4078)
Probab=22.12 E-value=3e+02 Score=26.73 Aligned_cols=11 Identities=27% Similarity=0.160 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 001419 360 LKRQEELIREE 370 (1080)
Q Consensus 360 ~~rQ~~Ll~E~ 370 (1080)
...|++.|.++
T Consensus 45 R~~qme~L~~~ 55 (88)
T PF13300_consen 45 RQEQMEELEEL 55 (88)
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 355
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.96 E-value=9.7e+02 Score=27.04 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=4.0
Q ss_pred HHHHHHhhh
Q 001419 398 AKQKRNNRK 406 (1080)
Q Consensus 398 akeee~~rk 406 (1080)
-|++|.++.
T Consensus 141 cke~E~A~~ 149 (253)
T cd07676 141 CKEADRAQQ 149 (253)
T ss_pred HHHHHHHHH
Confidence 344444443
No 356
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.72 E-value=1.4e+02 Score=38.71 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCC
Q 001419 280 LVDDVLLLLERAALEPLPPKDEK 302 (1080)
Q Consensus 280 l~~Dfq~~LEr~~LEplp~~~~~ 302 (1080)
+.-.+..+.|+.|=+.|+--||+
T Consensus 863 LLHfLae~~e~kypd~l~F~ddl 885 (1102)
T KOG1924|consen 863 LLHFLAEICEEKYPDILKFPDDL 885 (1102)
T ss_pred HHHHHHHHHHHhChhhhcchhhH
Confidence 34445556677777777654433
No 357
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=4.5e+02 Score=32.47 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001419 358 VALKRQEELIREEEA 372 (1080)
Q Consensus 358 ~A~~rQ~~Ll~E~E~ 372 (1080)
+|...+.++++-|+.
T Consensus 197 ~ak~eyNe~Vr~lv~ 211 (508)
T KOG0717|consen 197 YARQEYNETVRNLVG 211 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 358
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=21.50 E-value=1.5e+02 Score=28.55 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHhhhhhhhhh
Q 001419 370 EEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNR--KGKEKKREERSSMALSDRL 424 (1080)
Q Consensus 370 ~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~~r--k~~ek~~ee~~~~~~e~~~ 424 (1080)
+++..-.++|.+.--.+.++-=|..+|.||.+.++| -+++|+-+|+-.+..|+|+
T Consensus 22 ~~e~n~~kee~kl~~kEekrrLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERr 78 (86)
T PF15437_consen 22 LEENNYQKEEPKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERR 78 (86)
T ss_pred hhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=38 Score=40.44 Aligned_cols=11 Identities=55% Similarity=1.364 Sum_probs=5.7
Q ss_pred cccccccccccc
Q 001419 162 WGWKKFMELSKV 173 (1080)
Q Consensus 162 WGwskFIswddL 173 (1080)
||| .|-.+..+
T Consensus 185 YGw-HFPEL~ki 195 (498)
T KOG2572|consen 185 YGW-HFPELAKI 195 (498)
T ss_pred Hhh-hhHHHHHH
Confidence 356 45555544
No 360
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=21.42 E-value=2.1e+02 Score=37.08 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001419 349 KIEVAYQEAVALKRQEE 365 (1080)
Q Consensus 349 ri~~Ay~E~~A~~rQ~~ 365 (1080)
+...++--+++.+=+.+
T Consensus 370 ~~rstnakk~s~lC~RE 386 (1185)
T KOG0388|consen 370 SARSTNAKKTSILCARE 386 (1185)
T ss_pred HHhhhhhHHHHHHHHHH
Confidence 33444444444443333
No 361
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=21.13 E-value=33 Score=38.29 Aligned_cols=48 Identities=31% Similarity=0.300 Sum_probs=29.4
Q ss_pred ccCCchhhhhhhhccccccccccccccccc--------ccCCCCccccccccCCCC
Q 001419 921 DEFPHLDIINDLLDDEHGVGMAAGASTVLQ--------SLSNGPHTLNRQFSFPRD 968 (1080)
Q Consensus 921 dEFPHLDIINDLL~eeq~~g~~~~~~~~~~--------~~~~~~~~f~~~fs~~g~ 968 (1080)
+-.|+||||||.|.||--+-+-+=...-+| +++++.+.+.+-|+-.+.
T Consensus 49 ~h~~YLdiIN~il~~eSeN~Kyayeg~nYHwvITdFdIsIdNsS~~lk~~fs~~k~ 104 (249)
T PF11675_consen 49 KHTKYLDIINDILRDESENIKYAYEGGNYHWVITDFDISIDNSSRYLKKKFSKNKI 104 (249)
T ss_pred cchhHHHHHHHHHhccccccceeeeCCceEEEEEeeeEEecCCCHHHHhhhcccch
Confidence 457999999999999765422221111111 356666666666766664
No 362
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.88 E-value=87 Score=34.37 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhc
Q 001419 389 KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 426 (1080)
Q Consensus 389 kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~~~e 426 (1080)
++=++.||.+||=.++.+|+.|+..+++-+..++++.|
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qme 109 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 363
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.73 E-value=5.3e+02 Score=31.58 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=14.7
Q ss_pred CccccCCCCCCCCCCCCCcC
Q 001419 464 GAEVLQPDSEDRDTSPVNWD 483 (1080)
Q Consensus 464 ~~e~~~~d~edr~~s~v~~~ 483 (1080)
.++|...-++-=-+.||-|+
T Consensus 283 fgtIN~FRLG~lp~~pVew~ 302 (447)
T KOG2751|consen 283 FGTINNFRLGRLPSVPVEWD 302 (447)
T ss_pred ccccccceeccccCCCcCHH
Confidence 45666666666777899997
No 364
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.70 E-value=6.7e+02 Score=33.63 Aligned_cols=29 Identities=28% Similarity=0.165 Sum_probs=24.0
Q ss_pred hhhhhccccccCCCCCCCCCCCCCccccc
Q 001419 761 LARSVSAAGRLGPDLAPATHGYIPQSYRN 789 (1080)
Q Consensus 761 LsRS~sa~gr~g~dps~~~~sy~pqsYrn 789 (1080)
..+..+++.|+|+.+-.++|-+.||+--+
T Consensus 1015 ~~~~a~~a~~~~~~~~~~~P~~~~~s~~~ 1043 (1080)
T KOG0566|consen 1015 MPSPASAATLSGPWYVISKPLAPPQSNNG 1043 (1080)
T ss_pred CCCccchhccCCCcccccCCccchhhccc
Confidence 67778888899998888899999987654
No 365
>PF13892 DBINO: DNA-binding domain
Probab=20.61 E-value=5.5e+02 Score=26.97 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 001419 355 QEAVALKRQEEL 366 (1080)
Q Consensus 355 ~E~~A~~rQ~~L 366 (1080)
-.++|.+-+.++
T Consensus 37 ~kk~a~~c~re~ 48 (139)
T PF13892_consen 37 AKKIAQLCAREA 48 (139)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 366
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=20.45 E-value=2.9e+02 Score=34.86 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=11.1
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 001419 342 LAHIFSNKIEVAYQEAVALK 361 (1080)
Q Consensus 342 ~~k~F~~ri~~Ay~E~~A~~ 361 (1080)
|+|+.-.+|+-||--+|+..
T Consensus 387 LthLiGt~vLrAyMHGyFid 406 (703)
T KOG2321|consen 387 LTHLIGTNVLRAYMHGYFID 406 (703)
T ss_pred CcceeCchHHHHHhhhhhhh
Confidence 45555556666655555443
No 367
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.44 E-value=8.9e+02 Score=24.42 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001419 344 HIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKR 412 (1080)
Q Consensus 344 k~F~~ri~~Ay~E~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~~rk~~ek~~ 412 (1080)
+.|-.+|..+.........+.+..-|.-.+.-.++.++.|.-+|-+||+.......+..+..|+-+..+
T Consensus 70 ~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~r~EQk~~DE~a 138 (147)
T PRK05689 70 QQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAENKREQKQMDEFA 138 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 368
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.43 E-value=3.3e+02 Score=31.85 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.9
Q ss_pred cccccccCCC
Q 001419 570 VWATETENQP 579 (1080)
Q Consensus 570 ~~~~~~~~~p 579 (1080)
.|..|....|
T Consensus 165 ~~v~E~~~~~ 174 (378)
T TIGR01554 165 AKVEEEEARP 174 (378)
T ss_pred cccccccccc
Confidence 4555544444
No 369
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.33 E-value=2.7e+02 Score=37.35 Aligned_cols=27 Identities=26% Similarity=0.179 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001419 358 VALKRQEELIREEEAAW-LAESEQKAKR 384 (1080)
Q Consensus 358 ~A~~rQ~~Ll~E~E~e~-~~e~er~~kk 384 (1080)
|-+..-.||||||-||- |++..+.+..
T Consensus 354 VNEdpnaKLIRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 354 VNEDPNAKLIRELREEVARLKSLLRAQG 381 (1221)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHhccc
Confidence 34455679999996654 5665555544
No 370
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=20.28 E-value=3.1e+02 Score=36.78 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001419 355 QEAVALKRQEELIREEEA 372 (1080)
Q Consensus 355 ~E~~A~~rQ~~Ll~E~E~ 372 (1080)
.|+.|.++-.+|-+-|+|
T Consensus 863 cekla~kv~~~Le~~e~E 880 (1330)
T KOG0949|consen 863 CEKLALKVHRQLESMEME 880 (1330)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356666666555544444
No 371
>PHA00448 hypothetical protein
Probab=20.20 E-value=2.4e+02 Score=26.27 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhh
Q 001419 389 KEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRL 424 (1080)
Q Consensus 389 kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~~ 424 (1080)
+|-.+.++.||+-...++++-....|+++.+...++
T Consensus 29 ~~A~~A~~lakqs~~l~~aA~~~~~~AAriAakAq~ 64 (70)
T PHA00448 29 KDATRARRLAKQSRELSDAASAGVTEAARIAAKAQQ 64 (70)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 444455566777766666666666666666655443
No 372
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.01 E-value=4.5e+02 Score=30.29 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhh
Q 001419 357 AVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDR 423 (1080)
Q Consensus 357 ~~A~~rQ~~Ll~E~E~e~~~e~er~~kk~~k~kekk~~~k~akeee~~rk~~ek~~ee~~~~~~e~~ 423 (1080)
++.++|+ .=.|-.+..+.....+.++.+|+..+++-.++++|-...++|.++.|++.+...+|
T Consensus 167 kV~WLR~----~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 167 KVDWLRS----KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKER 229 (269)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!