Query 001419
Match_columns 1080
No_of_seqs 337 out of 1242
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 15:51:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001419.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_722-726//hhsearch_pdb/001419hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hqi_A Speckle-type POZ protei 1.0 1 1 268.8 13.4 249 66-341 5-301 (312)
2 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 258.9 11.6 180 53-256 19-206 (522)
3 2foj_A Ubiquitin carboxyl-term 1.0 1 1 204.2 13.5 140 53-197 7-153 (155)
4 4gjh_A TNF receptor-associated 1.0 1 1 183.6 6.0 130 65-194 21-175 (178)
5 1ca9_A TRAF2, protein (TNF rec 1.0 1 1 183.3 5.5 129 65-193 40-191 (192)
6 3ivv_A Speckle-type POZ protei 1.0 1 1 178.4 12.2 125 64-193 7-144 (145)
7 1d00_A Tumor necrosis factor r 1.0 1 1 178.3 6.7 129 65-193 16-167 (168)
8 4ghu_A TNF receptor-associated 1.0 1 1 177.9 6.3 132 65-196 37-191 (198)
9 2gkw_A TNF receptor-associated 1.0 1 1 173.7 5.8 128 66-193 38-188 (192)
10 1flk_A TNF receptor associated 1.0 1 1 172.6 4.5 129 66-194 74-225 (228)
No 1
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=1.00 E-value=1 Score=268.76 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=189.0
Q ss_pred CCCEEEEEECCCCCCC---CCEEECCCEEECCE---EEEEEEEECCCC--CCCEEEEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf 5758999984854346---99120794786892---999999947898--998089999972268999997299999999
Q 001419 66 LYGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCD--VCNHLSLFLCVANHDKLLPGWSHFAQFTIA 137 (1080)
Q Consensus 66 ~~gtFtWkIeNFSkLk---ee~i~Sp~FevGG~---kWrIlVYPrGn~--~~dyLSLYLec~~~esls~dWSI~AqFtL~ 137 (1080)
..++|+|+|+|||.++ ++.++|+.|.+||+ +|+|.+||+|++ ..+|||+||+|... +.|.+.++|+|.
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~ 80 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 80 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEE
T ss_pred EEEEEEEEECCCCHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC----CCCCEEEEEEEE
T ss_conf 9999999993710132349975750876349988865999998998986678838999997378----998489999999
Q ss_pred EEECCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEEEEEEEC----CCCCC----CCC--
Q ss_conf 99389998300--34402203799876434431311213---55334996999999999824----64334----446--
Q 001419 138 VVNRDPKKSKY--SDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVISF----CAFWL----GID-- 202 (1080)
Q Consensus 138 LINqdGkkS~s--kessh~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEv~VkVikm----~giw~----~fD-- 202 (1080)
|+|++++.... ....+.|.. ..+|||.+||+|++|+ ++||+||+|+|+|+|.|++. .+... .++
T Consensus 81 l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~ 159 (312)
T 3hqi_A 81 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPEC 159 (312)
T ss_dssp EECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCCCCCC
T ss_pred EEECCCCCCCCCCCCCCEECCC-CCCCCHHHHCCHHHHHCCCCCEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9957998334201577355789-997587886659886110037032998999999899840455556566666678983
Q ss_pred ----HHHHHCCCCCCCCEEEEEECEEEEEHHHHHHH--HHHHHHHHHHHCCCCCCCC--------------CCCCCEECC
Q ss_conf ----45541024676671799711555320135677--7698886431001000101--------------102220025
Q 001419 203 ----QNARRRMSREKTDAILKVVVKHFFIEKEVTST--LVMDSLYSGLKALEGQSKS--------------KKTKAKLLD 262 (1080)
Q Consensus 203 ----~~~rl~DSKE~SDVvLkV~vkKFyVsKnvLAT--lYMnSLLqgLy~Le~Fres--------------~Ks~i~l~D 262 (1080)
+...++...+++||+|+|.+++|++||.+||. .||..||.+ .+.++ ++..+.++|
T Consensus 160 ~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~-----~~~e~~~~~i~l~~~~~~~f~~~L~~iY 234 (312)
T 3hqi_A 160 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH-----EMEESKKNRVEINDVEPEVFKEMMCFIY 234 (312)
T ss_dssp CHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC----------CCSEEEECSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCEEEEHHHHHHHHCCHHHHHHHCC-----CCCCCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 47999999983899874699989989858799998739999987436-----7655688639925899999999998610
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----H-HHHHHHHHHHHHH
Q ss_conf 7789998067616510016889999999725999999989972112468999876653367----9-7777668722378
Q 001419 263 AEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE----R-DERRLTELGRRTV 337 (1080)
Q Consensus 263 tDe~p~~~v~v~~d~fvl~~Dll~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve----~-ee~~~~Elgrr~i 337 (1080)
++.++... .++.+++.++++|.++.|+. +|.+.+.+. ++.+++. . +.|+|.+|+.+|+
T Consensus 235 t~~~~~~~--------~~~~~ll~~A~~~~~~~l~~---~c~~~l~~~------~~~~n~~~~l~~A~~~~~~~L~~~~~ 297 (312)
T 3hqi_A 235 TGKAPNLD--------KMADDLLAAADKYALERLKV---MCEDALCSN------LSVENAAEILILADLHSADQLKTQAV 297 (312)
T ss_dssp HSCCTTHH--------HHHHHHHHHHHHTTCHHHHH---HHHHHHHTT------CCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCHH--------HHHHHHHHHHHHHCHHHHHH---HHHHHHHCC------CCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 79989768--------99999999999839999999---999999730------99899999999999959799999999
Q ss_pred HHHH
Q ss_conf 9999
Q 001419 338 EIFV 341 (1080)
Q Consensus 338 eifa 341 (1080)
++..
T Consensus 298 ~~i~ 301 (312)
T 3hqi_A 298 DFIN 301 (312)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 2
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=258.90 Aligned_cols=180 Identities=27% Similarity=0.365 Sum_probs=151.7
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCEEECCEEEEEEEEECCCC---CCCEEEEEEEEECCCCCCCCCE
Q ss_conf 9878899999755575899998485434699120794786892999999947898---9980899999722689999972
Q 001419 53 TDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCD---VCNHLSLFLCVANHDKLLPGWS 129 (1080)
Q Consensus 53 ~~m~dd~~~~~s~~~gtFtWkIeNFSkLkee~i~Sp~FevGG~kWrIlVYPrGn~---~~dyLSLYLec~~~esls~dWS 129 (1080)
..|++|. +.+..++|+|+|+|||.+++ .++|++|.+||++|+|++||+|+. ..+||||||+|... ..+..|.
T Consensus 19 ~~~~~~~---~~~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~ 93 (522)
T 2f1z_A 19 EDMEDDT---SWRSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWS 93 (522)
T ss_dssp ----------CCCSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCB
T ss_pred CCCCCCC---CCCCCCEEEEEECCHHHCCC-CEECCCEEECCEEEEEEEEECCCCCCCCCCEEEEEEEECCC-CCCCCCE
T ss_conf 2234466---65677579999899542578-43579989998746999995887889999869999984488-8888806
Q ss_pred EEEEEEEEEEECCC-CCCCCCCCCEECCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEEEEEEECCCCCCCCCHHH
Q ss_conf 99999999993899-9830034402203799876434431311213---5533499699999999982464334446455
Q 001419 130 HFAQFTIAVVNRDP-KKSKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVISFCAFWLGIDQNA 205 (1080)
Q Consensus 130 I~AqFtL~LINqdG-kkS~skessh~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEv~VkVikm~giw~~fD~~~ 205 (1080)
++|+|+|.|+|+.+ ..+..+...|+|.....+|||.+||+|++|. ++||+||+++|+|.|+|....++-
T Consensus 94 v~a~f~l~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~~------- 166 (522)
T 2f1z_A 94 CHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA------- 166 (522)
T ss_dssp EEEEEEEEECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSSC-------
T ss_pred EEEEEEEEEECCCCCCCCEECCCEEEECCCCCCCCHHHEEEHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCC-------
T ss_conf 9999999997588885424314303865899985321046766745866686358857999986414664444-------
Q ss_pred HHCCCCCCCC-EEEEEECEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4102467667-17997115553201356777698886431001000101102
Q 001419 206 RRRMSREKTD-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 206 rl~DSKE~SD-VvLkV~vkKFyVsKnvLATlYMnSLLqgLy~Le~Fres~Ks 256 (1080)
++++..++ ||| +|.++||||||+||.|+++++|++....
T Consensus 167 --~~~~~~~g~~GL----------~NlGnTCYmNSvLQ~L~~~~~fr~~~~~ 206 (522)
T 2f1z_A 167 --WDSKKHTGYVGL----------KNQGATCYMNSLLQTLFFTNQLRKAVYM 206 (522)
T ss_dssp --CCTTTTTSCCCB----------CCC--CTTHHHHHHHHHTCHHHHHHHHT
T ss_pred --CCCCCCCCCCCE----------ECCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf --776556785441----------1386318888999998612999999960
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=1.00 E-value=1 Score=204.19 Aligned_cols=140 Identities=26% Similarity=0.437 Sum_probs=118.5
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCEEECCEEEEEEEEECCCC---CCCEEEEEEEEECCCCCCCCCE
Q ss_conf 9878899999755575899998485434699120794786892999999947898---9980899999722689999972
Q 001419 53 TDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCD---VCNHLSLFLCVANHDKLLPGWS 129 (1080)
Q Consensus 53 ~~m~dd~~~~~s~~~gtFtWkIeNFSkLkee~i~Sp~FevGG~kWrIlVYPrGn~---~~dyLSLYLec~~~esls~dWS 129 (1080)
.+|+||. +.+..++|+|+|+|||.++ +.++|+.|.+||++|+|++||+|+. ..+||||||+|... ..+..|.
T Consensus 7 ~~~~~~~---~~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~ 81 (155)
T 2foj_A 7 EDMEDDT---SWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWS 81 (155)
T ss_dssp ------C---TTCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCE
T ss_pred CCCCCCC---CCCCCCEEEEEECCHHHCC-CCEECCCEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCC-CCCCCCE
T ss_conf 2125577---7587758999988853168-846959999988347999997887778999889999980798-8998988
Q ss_pred EEEEEEEEEEECCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 9999999999389998-30034402203799876434431311213---55334996999999999824643
Q 001419 130 HFAQFTIAVVNRDPKK-SKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVISFCAF 197 (1080)
Q Consensus 130 I~AqFtL~LINqdGkk-S~skessh~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEv~VkVikm~gi 197 (1080)
+.|+|+|+|+|+++.. +..+...+.|.....+|||.+||+|++|+ ++||+||+|+|+|+|+|.+++|+
T Consensus 82 v~a~~~l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 82 CHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp EEEEEEEEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEEEEEEEEECCCCCCCEEEECCEEEECCCCCCEEECCEEEHHHHCCCCCCCEECCEEEEEEEEEEECCCCC
T ss_conf 999999999918999541893427896899999918876999995486799659999999999998176255
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=1.00 E-value=1 Score=183.60 Aligned_cols=130 Identities=22% Similarity=0.387 Sum_probs=105.8
Q ss_pred CCCCEEEEEECCCCCCCCC-------EEECCCEEEC--CEEEEEEEEECCCCC--CCEEEEEEEEECCCCC-CCCCEEEE
Q ss_conf 5575899998485434699-------1207947868--929999999478989--9808999997226899-99972999
Q 001419 65 ELYGKYTWRIEKFSQISKR-------ELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFA 132 (1080)
Q Consensus 65 ~~~gtFtWkIeNFSkLkee-------~i~Sp~FevG--G~kWrIlVYPrGn~~--~dyLSLYLec~~~esl-s~dWSI~A 132 (1080)
...++|+|+|+|||.++++ .++|++|.+| ||+|+|++||+|+.. .+|||+||+|...... ...|.+.+
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCCEEECCCEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEEE
T ss_conf 11418999999889988663248982898998381899908999999799998889889999998158878666981589
Q ss_pred EEEEEEEECCCCC-CCCCC-----CCEECCC----CCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEEEEEEEC
Q ss_conf 9999999389998-30034-----4022037----998764344313112135---5334996999999999824
Q 001419 133 QFTIAVVNRDPKK-SKYSD-----TLHRFWK----KEHDWGWKKFMELSKVSD---GFKDGDTLIIKAQVQVISF 194 (1080)
Q Consensus 133 qFtL~LINqdGkk-S~ske-----ssh~Fs~----ke~dWGwskFIswddLes---GFLVDDsLtIEv~VkVikm 194 (1080)
+|+|.|+||++.. ..... ..+.|.. .+.+|||.+||+|++|++ +||+||+|+|+|+|.|.++
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHHCCCCCCCCCCEEEEEEEEEECCC
T ss_conf 999999807998632488630597643135876445677073341499996343459691999999999995678
No 5
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=1.00 E-value=1 Score=183.32 Aligned_cols=129 Identities=25% Similarity=0.417 Sum_probs=104.4
Q ss_pred CCCCEEEEEECCCCCCCCC-------EEECCCEEE--CCEEEEEEEEECCCC--CCCEEEEEEEEECCCCCC-CCCEEEE
Q ss_conf 5575899998485434699-------120794786--892999999947898--998089999972268999-9972999
Q 001419 65 ELYGKYTWRIEKFSQISKR-------ELRSNAFEV--GGYKWYILIYPQGCD--VCNHLSLFLCVANHDKLL-PGWSHFA 132 (1080)
Q Consensus 65 ~~~gtFtWkIeNFSkLkee-------~i~Sp~Fev--GG~kWrIlVYPrGn~--~~dyLSLYLec~~~esls-~dWSI~A 132 (1080)
...++|+|+|+|||.+++. .++|+.|.+ |||+|+|.+||+|+. ..+|||+||+|.....+. ..|.+.+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHCCCCCEEECCEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 63846999989889999875448983387752896899958999998189988889789999997058888767982689
Q ss_pred EEEEEEEECCCCCCCCCC-----CCEECCC----CCCCCCCCCCCCCCCCC--CCCCCCCEEEEEEEEEEEE
Q ss_conf 999999938999830034-----4022037----99876434431311213--5533499699999999982
Q 001419 133 QFTIAVVNRDPKKSKYSD-----TLHRFWK----KEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQVQVIS 193 (1080)
Q Consensus 133 qFtL~LINqdGkkS~ske-----ssh~Fs~----ke~dWGwskFIswddLe--sGFLVDDsLtIEv~VkVik 193 (1080)
+|+|.|+|+++.+..... ..+.|.. .+.+|||.+||+|++|+ ++||+||+|+|+|+|.|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCCEEEEEECCCCCHHHHCCCCCCCCCCCCHHHEEEHHHHHHCCCCEECCEEEEEEEEEECC
T ss_conf 999999789998520576206974242058766788872821352899952156977599999999999358
No 6
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=1.00 E-value=1 Score=178.42 Aligned_cols=125 Identities=29% Similarity=0.533 Sum_probs=106.4
Q ss_pred CCCCCEEEEEECCCCCCCC---CEEECCCEEECCE---EEEEEEEECCCCC--CCEEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 5557589999848543469---9120794786892---9999999478989--980899999722689999972999999
Q 001419 64 SELYGKYTWRIEKFSQISK---RELRSNAFEVGGY---KWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFT 135 (1080)
Q Consensus 64 s~~~gtFtWkIeNFSkLke---e~i~Sp~FevGG~---kWrIlVYPrGn~~--~dyLSLYLec~~~esls~dWSI~AqFt 135 (1080)
....++|+|+|+|||.+++ +.++|++|.+||| +|+|++||+|+.. .+|||+||+|... +.|.+.|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~ 82 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK 82 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred CEEEEEEEEEECCCHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCC----CCCCEEEEEE
T ss_conf 688899999994714785369988987996779967833999998199988899869999997379----9972999999
Q ss_pred EEEEECCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEEEEEEE
Q ss_conf 999938999830--034402203799876434431311213---5533499699999999982
Q 001419 136 IAVVNRDPKKSK--YSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIS 193 (1080)
Q Consensus 136 L~LINqdGkkS~--skessh~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEv~VkVik 193 (1080)
|+|+|+++.... .....++|.. ..+|||.+||+|++|+ ++||+||+|+|+|+|+|++
T Consensus 83 l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 83 FSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred EEEEECCCCCEEEECCCCEEEECC-CCCCCHHHEEEHHHHCCCCCCCEECCEEEEEEEEEEEE
T ss_conf 999936998221361565088229-99858789488646334447848699999999999980
No 7
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=1.00 E-value=1 Score=178.33 Aligned_cols=129 Identities=26% Similarity=0.416 Sum_probs=104.0
Q ss_pred CCCCEEEEEECCCCCCCC-----C--EEECCCEE--ECCEEEEEEEEECCCC--CCCEEEEEEEEECCCCCC-CCCEEEE
Q ss_conf 557589999848543469-----9--12079478--6892999999947898--998089999972268999-9972999
Q 001419 65 ELYGKYTWRIEKFSQISK-----R--ELRSNAFE--VGGYKWYILIYPQGCD--VCNHLSLFLCVANHDKLL-PGWSHFA 132 (1080)
Q Consensus 65 ~~~gtFtWkIeNFSkLke-----e--~i~Sp~Fe--vGG~kWrIlVYPrGn~--~~dyLSLYLec~~~esls-~dWSI~A 132 (1080)
...++|+|+|+|||.+++ + .++|++|. +|||+|+|++||+|+. ..+|||+||+|.....+. ..|.+.+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEEE
T ss_conf 34878999989889999875438973898988005899989999999689998888689999999617888668985689
Q ss_pred EEEEEEEECCCCCCCCCC-----CCEECCC----CCCCCCCCCCCCCCCCCC--CCCCCCEEEEEEEEEEEE
Q ss_conf 999999938999830034-----4022037----998764344313112135--533499699999999982
Q 001419 133 QFTIAVVNRDPKKSKYSD-----TLHRFWK----KEHDWGWKKFMELSKVSD--GFKDGDTLIIKAQVQVIS 193 (1080)
Q Consensus 133 qFtL~LINqdGkkS~ske-----ssh~Fs~----ke~dWGwskFIswddLes--GFLVDDsLtIEv~VkVik 193 (1080)
+|+|.|+|+++++..... ..+.|.. .+.+|||.+||+|++|++ +||+||+|+|+|+|.|.+
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCEECCEEEEEEEEEECC
T ss_conf 999999789997101250226852310368776777870706376899950458956599999999998158
No 8
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=1.00 E-value=1 Score=177.89 Aligned_cols=132 Identities=21% Similarity=0.366 Sum_probs=105.6
Q ss_pred CCCCEEEEEECCCCCCCC-------CEEECCCEEEC--CEEEEEEEEECCCCC--CCEEEEEEEEECCCCC-CCCCEEEE
Q ss_conf 557589999848543469-------91207947868--929999999478989--9808999997226899-99972999
Q 001419 65 ELYGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCDV--CNHLSLFLCVANHDKL-LPGWSHFA 132 (1080)
Q Consensus 65 ~~~gtFtWkIeNFSkLke-------e~i~Sp~FevG--G~kWrIlVYPrGn~~--~dyLSLYLec~~~esl-s~dWSI~A 132 (1080)
...++|+|+|+|||.++. +.++|++|.+| ||+|+|.+||+|+.. .+||||||++.+.+.+ ...|.+.+
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred CCCCEEEEEECCHHHHHHHHCCCCCCEEECCCEEECCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE
T ss_conf 22538999989978977542148994898998587899928999999699888899869999994377667777963999
Q ss_pred EEEEEEEECCCCC-CCCCC-----CCEEC----CCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEEEEEEECCC
Q ss_conf 9999999389998-30034-----40220----3799876434431311213-5533499699999999982464
Q 001419 133 QFTIAVVNRDPKK-SKYSD-----TLHRF----WKKEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVISFCA 196 (1080)
Q Consensus 133 qFtL~LINqdGkk-S~ske-----ssh~F----s~ke~dWGwskFIswddLe-sGFLVDDsLtIEv~VkVikm~g 196 (1080)
+|+|.|+||.+.. +.... ....| ...+.+|||.+||++++|+ ++||+||+|+|+|.|.|+....
T Consensus 117 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEECCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCHHEEEHHHHHHCCCEECCEEEEEEEEEECCCCC
T ss_conf 999999828998542378750686631004876667687370558389996436870299899999999656899
No 9
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=1.00 E-value=1 Score=173.70 Aligned_cols=128 Identities=23% Similarity=0.393 Sum_probs=103.6
Q ss_pred CCCEEEEEECCCCCCCC-----C--EEECCCEEEC--CEEEEEEEEECCCC--CCCEEEEEEEEECCCCC-CCCCEEEEE
Q ss_conf 57589999848543469-----9--1207947868--92999999947898--99808999997226899-999729999
Q 001419 66 LYGKYTWRIEKFSQISK-----R--ELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQ 133 (1080)
Q Consensus 66 ~~gtFtWkIeNFSkLke-----e--~i~Sp~FevG--G~kWrIlVYPrGn~--~~dyLSLYLec~~~esl-s~dWSI~Aq 133 (1080)
..++|+|+|+|||.++. + .++|++|.+| ||+|+|.+||+|++ ..+|||+||++.+.+.+ ...|.+.++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHCCCCCEEECCCEEECCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEE
T ss_conf 27389999898799998754489725870257978999189999996899988987899999985688776679837899
Q ss_pred EEEEEEECCCCC-CCCCC-----CCEECCCC----CCCCCCCCCCCCCCCC-CCCCCCCEEEEEEEEEEEE
Q ss_conf 999999389998-30034-----40220379----9876434431311213-5533499699999999982
Q 001419 134 FTIAVVNRDPKK-SKYSD-----TLHRFWKK----EHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVIS 193 (1080)
Q Consensus 134 FtL~LINqdGkk-S~ske-----ssh~Fs~k----e~dWGwskFIswddLe-sGFLVDDsLtIEv~VkVik 193 (1080)
|+|.|+||.+.+ ..... ..+.|... +.+|||.+||++++|+ ++||+||+|+|+|.|.|..
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCEECCEEEEEEEEECCC
T ss_conf 99999889998531378874598754223888777688795788499995828886099999999998477
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=1.00 E-value=1 Score=172.58 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=104.2
Q ss_pred CCCEEEEEECCCCCCCC-------CEEECCCEEEC--CEEEEEEEEECCCC--CCCEEEEEEEEECCCCC-CCCCEEEEE
Q ss_conf 57589999848543469-------91207947868--92999999947898--99808999997226899-999729999
Q 001419 66 LYGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQ 133 (1080)
Q Consensus 66 ~~gtFtWkIeNFSkLke-------e~i~Sp~FevG--G~kWrIlVYPrGn~--~~dyLSLYLec~~~esl-s~dWSI~Aq 133 (1080)
..++|+|+|+|||.++. ..++|++|++| ||+|+|.+||+|++ .++|||+||++.+.+.+ ...|.+.++
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~ 153 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 153 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEE
T ss_conf 67179999898799998765489705878669968999499999970899988998899999972588666679857899
Q ss_pred EEEEEEECCCCC-CCCC-----CCCEECCC----CCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEEEEEEEC
Q ss_conf 999999389998-3003-----44022037----99876434431311213-55334996999999999824
Q 001419 134 FTIAVVNRDPKK-SKYS-----DTLHRFWK----KEHDWGWKKFMELSKVS-DGFKDGDTLIIKAQVQVISF 194 (1080)
Q Consensus 134 FtL~LINqdGkk-S~sk-----essh~Fs~----ke~dWGwskFIswddLe-sGFLVDDsLtIEv~VkVikm 194 (1080)
|+|.|+||.+.+ +... ...+.|.. .+.+|||.+||++++|+ ++||+||+|+|+|.|.|.+.
T Consensus 154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTTS
T ss_pred EEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCCCCCEEEEEEEEECCCC
T ss_conf 999998689986550244317976333458766777886888960799975178803998999999990665
Done!