Query 001419
Match_columns 1080
No_of_seqs 337 out of 1242
Neff 4.3
Searched_HMMs 13730
Date Tue Mar 26 15:58:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001419.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_722-726//hhsearch_scop/001419hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1czya1 b.8.1.1 (A:350-501) TN 99.8 6.5E-21 4.7E-25 160.6 8.8 126 67-192 2-150 (152)
2 d1l0aa1 b.8.1.1 (A:350-504) TN 99.8 1.5E-20 1.1E-24 158.1 8.4 126 67-192 2-150 (155)
3 d2cr2a1 b.8.1.1 (A:8-153) Spec 99.8 3E-20 2.2E-24 156.0 9.6 124 67-194 4-139 (146)
4 d1lb6a_ b.8.1.1 (A:) TNF recep 99.8 6.6E-20 4.8E-24 153.6 10.4 126 65-190 2-154 (155)
5 d1r29a_ d.42.1.1 (A:) B-cell l 97.8 7E-05 5.1E-09 48.5 8.6 99 207-341 19-120 (122)
6 d1buoa_ d.42.1.1 (A:) Promyelo 97.5 0.00027 1.9E-08 44.5 8.4 88 208-340 23-117 (121)
7 d1nbfa_ d.3.1.9 (A:) Ubiquitin 95.4 0.0013 9.8E-08 39.5 0.1 36 211-256 1-37 (347)
8 d2gfoa1 d.3.1.9 (A:762-1109) U 95.1 0.0031 2.3E-07 36.9 1.3 36 210-255 9-45 (348)
9 d1vjva_ d.3.1.9 (A:) Ubiquitin 94.3 0.0048 3.5E-07 35.6 0.7 30 216-255 7-36 (397)
10 d2hd5a1 d.3.1.9 (A:211-521) Ub 94.2 0.005 3.6E-07 35.6 0.5 31 215-255 2-33 (336)
11 d2ayna1 d.3.1.9 (A:100-482) Ub 94.0 0.0055 4E-07 35.2 0.4 29 216-254 5-33 (383)
No 1
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.83 E-value=6.5e-21 Score=160.63 Aligned_cols=126 Identities=26% Similarity=0.433 Sum_probs=99.9
Q ss_pred CCEEEEEECCCCCCCC-------CEEECCCEEEC--CEEEEEEEEECCCC--CCCEEEEEEEEECCCCC-CCCCEEEEEE
Q ss_conf 7589999848543469-------91207947868--92999999947898--99808999997226899-9997299999
Q 001419 67 YGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQF 134 (1080)
Q Consensus 67 ~gtFtWkIeNFSkLke-------e~i~Sp~FevG--G~kWrIlVYPrGn~--~~dyLSLYLec~~~esl-s~dWSI~AqF 134 (1080)
.|+|+|+|+|||.+++ ..++||.|+++ ||+|+|.+||+|++ ..+||||||++.....+ ...|.+.++|
T Consensus 2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~ 81 (152)
T d1czya1 2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV 81 (152)
T ss_dssp SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred CCEEEEEECCCHHHHHHHHCCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 97899999992898776542798568891988089982999999818999889988999999726776766665366678
Q ss_pred EEEEEECCCCCCCCC----C-CCEE----CCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEEEEEEE
Q ss_conf 999993899983003----4-4022----03799876434431311213--553349969999999998
Q 001419 135 TIAVVNRDPKKSKYS----D-TLHR----FWKKEHDWGWKKFMELSKVS--DGFKDGDTLIIKAQVQVI 192 (1080)
Q Consensus 135 tL~LINqdGkkS~sk----e-ssh~----Fs~ke~dWGwskFIswddLe--sGFLVDDsLtIEv~VkVi 192 (1080)
+|.|+|+.+.+.... . ..+. |...+.+|||.+||++++|+ +|||+||+|+|+|.|.|.
T Consensus 82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~ 150 (152)
T d1czya1 82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 150 (152)
T ss_dssp EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCCEECCEEEEEEEEEEC
T ss_conf 999974788854215512563422436777554366224558899994414894849999999999934
No 2
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=1.5e-20 Score=158.05 Aligned_cols=126 Identities=21% Similarity=0.346 Sum_probs=100.3
Q ss_pred CCEEEEEECCCCCCC-------CCEEECCCEEEC--CEEEEEEEEECCCC--CCCEEEEEEEEECCCCC-CCCCEEEEEE
Q ss_conf 758999984854346-------991207947868--92999999947898--99808999997226899-9997299999
Q 001419 67 YGKYTWRIEKFSQIS-------KRELRSNAFEVG--GYKWYILIYPQGCD--VCNHLSLFLCVANHDKL-LPGWSHFAQF 134 (1080)
Q Consensus 67 ~gtFtWkIeNFSkLk-------ee~i~Sp~FevG--G~kWrIlVYPrGn~--~~dyLSLYLec~~~esl-s~dWSI~AqF 134 (1080)
+|+|+|+|+|||.++ ...++|+.|.++ ||+|+|.+||+|++ ..+||||||++...+.+ ...|.+.++|
T Consensus 2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~ 81 (155)
T d1l0aa1 2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV 81 (155)
T ss_dssp SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred CCEEEEEECCCHHHHHHHHCCCCCEEECCCEEECCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 97899999990898876543798379896998579994899999958988778877999999706776766677477789
Q ss_pred EEEEEECCCCC-CCCC-----C----CCEECCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEEEE
Q ss_conf 99999389998-3003-----4----4022037998764344313112135-53349969999999998
Q 001419 135 TIAVVNRDPKK-SKYS-----D----TLHRFWKKEHDWGWKKFMELSKVSD-GFKDGDTLIIKAQVQVI 192 (1080)
Q Consensus 135 tL~LINqdGkk-S~sk-----e----ssh~Fs~ke~dWGwskFIswddLes-GFLVDDsLtIEv~VkVi 192 (1080)
+|.|+|+.+.. .... . ..+.|...+.+|||.+||++++|++ |||+||+|+|+|.|.+.
T Consensus 82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~V~~~ 150 (155)
T d1l0aa1 82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTS 150 (155)
T ss_dssp EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHTTTTCBTTEEEEEEEECCS
T ss_pred EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHEEEHHHHHHCCCEECCEEEEEEEEEEC
T ss_conf 999964777754216787504464531100356626757055669999603897779999999999927
No 3
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=3e-20 Score=156.00 Aligned_cols=124 Identities=27% Similarity=0.494 Sum_probs=101.8
Q ss_pred CCEEEEEECCCCCCCC---CEEECCCEEECCE---EEEEEEEECCCCC--CCEEEEEEEEECCCCCCCCCEEEEEEEEEE
Q ss_conf 7589999848543469---9120794786892---9999999478989--980899999722689999972999999999
Q 001419 67 YGKYTWRIEKFSQISK---RELRSNAFEVGGY---KWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIAV 138 (1080)
Q Consensus 67 ~gtFtWkIeNFSkLke---e~i~Sp~FevGG~---kWrIlVYPrGn~~--~dyLSLYLec~~~esls~dWSI~AqFtL~L 138 (1080)
..+|+|+|+||+.+++ +.++||.|.++|+ +|+|++||+|+.. .+|||+||+|... ..|.+.++|+|.|
T Consensus 4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~----~~~~v~~~~~~~l 79 (146)
T d2cr2a1 4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 79 (146)
T ss_dssp EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC----SSSEEEEECEEEE
T ss_pred EEEEEEEECCCHHHHHCCCCEEECCCEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEE
T ss_conf 899999999910776269999989997969967808999999798888889879999874157----7751889999999
Q ss_pred EECCCCCCC-CCCCCEECCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEEEEEEEC
Q ss_conf 938999830-034402203799876434431311213---55334996999999999824
Q 001419 139 VNRDPKKSK-YSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVISF 194 (1080)
Q Consensus 139 INqdGkkS~-skessh~Fs~ke~dWGwskFIswddLe---sGFLVDDsLtIEv~VkVikm 194 (1080)
+|+++.+.. .....+.|...+.+|||.+||++++|. ++||+||+|+|+|+|+|++.
T Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e 139 (146)
T d2cr2a1 80 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (146)
T ss_dssp ECTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECC
T ss_pred ECCCCCCCCCEEECCEEECCCCCEEECCEEEEHHHHCCCCCCCEECCEEEEEEEEEEEEC
T ss_conf 958999522167001273788976613579898995075269365999999999999908
No 4
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=6.6e-20 Score=153.59 Aligned_cols=126 Identities=21% Similarity=0.398 Sum_probs=99.6
Q ss_pred CCCCEEEEEECCCCCCCC-------CEEECCCEEEC--CEEEEEEEEECCCCC---CCEEEEEEEEECCCCC-CCCCEEE
Q ss_conf 557589999848543469-------91207947868--929999999478989---9808999997226899-9997299
Q 001419 65 ELYGKYTWRIEKFSQISK-------RELRSNAFEVG--GYKWYILIYPQGCDV---CNHLSLFLCVANHDKL-LPGWSHF 131 (1080)
Q Consensus 65 ~~~gtFtWkIeNFSkLke-------e~i~Sp~FevG--G~kWrIlVYPrGn~~---~dyLSLYLec~~~esl-s~dWSI~ 131 (1080)
+..|+|+|+|+||+.+++ ..++||.|++| ||+|+|.+||+|+.. .+|||+||++...... ..+|.+.
T Consensus 2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~ 81 (155)
T d1lb6a_ 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (155)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHCCCCCEEECCCEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCEE
T ss_conf 33609999999948987764137982899929986899918999999688788889988899999865766666887577
Q ss_pred EEEEEEEEECCCCCC-CCCC------------CCEECCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEE
Q ss_conf 999999993899983-0034------------4022037998764344313112135-533499699999999
Q 001419 132 AQFTIAVVNRDPKKS-KYSD------------TLHRFWKKEHDWGWKKFMELSKVSD-GFKDGDTLIIKAQVQ 190 (1080)
Q Consensus 132 AqFtL~LINqdGkkS-~ske------------ssh~Fs~ke~dWGwskFIswddLes-GFLVDDsLtIEv~Vk 190 (1080)
+.|+|.|+++++... .... ..+.|...+.+|||.+||++++|++ |||+||+|+|+|.|.
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~gyl~dD~l~I~~~V~ 154 (155)
T d1lb6a_ 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVS 154 (155)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCEECCEEEEEEEEE
T ss_conf 8999999878888641025775311776433227865677587675784699996518888799999999997
No 5
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.79 E-value=7e-05 Score=48.51 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=69.3
Q ss_pred HCCCCCCCCEEEEEECEEEEEHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 1024676671799711555320135677--76988864310010001011022200257789998067616510016889
Q 001419 207 RRMSREKTDAILKVVVKHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDV 284 (1080)
Q Consensus 207 l~DSKE~SDVvLkV~vkKFyVsKnvLAT--lYMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Dl 284 (1080)
++....++||+|+|.+++|++||.+||. .||..||.+ .++++....+.+.+ +.++.|
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~-----~~~e~~~~~~~~~~----------------v~~~~f 77 (122)
T d1r29a_ 19 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD-----QLKRNLSVINLDPE----------------INPEGF 77 (122)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTS-----TTTTTCSEEECCTT----------------SCHHHH
T ss_pred HHHCCCCEEEEEEECCEEEEEEHHHHHHCCHHHHHHHCC-----CHHHHCCEEEEECC----------------CCHHHH
T ss_conf 983699768999999999998637766297778877422-----41642530565255----------------599999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 999999725999999989972112468999876653367-977776687223789999
Q 001419 285 LLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-RDERRLTELGRRTVEIFV 341 (1080)
Q Consensus 285 l~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-~ee~~~~Elgrr~ieifa 341 (1080)
..+|+-+|...+.+.. +.+ .+-.+ .+.+++.++.+.|.+|.-
T Consensus 78 ~~ll~~~Ytg~~~i~~--------------~~v-~~ll~~A~~l~i~~L~~~C~~~L~ 120 (122)
T d1r29a_ 78 NILLDFMYTSRLNLRE--------------GNI-MAVMATAMYLQMEHVVDTCRKFIK 120 (122)
T ss_dssp HHHHHHHHHSCCCCCT--------------TTH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEECCCH--------------HHH-HHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9998623277006734--------------319-999999999795899999999997
No 6
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.52 E-value=0.00027 Score=44.46 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=63.1
Q ss_pred CCCCCCCCEEEEEECEEEEEHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 024676671799711555320135677--769888643100100010110222002577899980676165100168899
Q 001419 208 RMSREKTDAILKVVVKHFFIEKEVTST--LVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVL 285 (1080)
Q Consensus 208 ~DSKE~SDVvLkV~vkKFyVsKnvLAT--lYMnSLLqgLy~Le~Fres~Ks~i~l~DtDe~p~~~v~v~~d~fvl~~Dll 285 (1080)
+....++||+|.|++++|++||.+||. .||..||.+ ...++.+.+ +.++.|.
T Consensus 23 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~----------~~~~i~~~~----------------v~~~~f~ 76 (121)
T d1buoa_ 23 RLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR----------NSQHYTLDF----------------LSPKTFQ 76 (121)
T ss_dssp HHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS----------CCSEEEECS----------------SCHHHHH
T ss_pred HHCCCCEEEEEEECCEEEEEEHHHHCCCCHHHHHHCCC----------CCCEEECCC----------------CCHHHHH
T ss_conf 93298476999999999998877840257222331457----------651453277----------------8979999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHH
Q ss_conf 99999725999999989972112468999876653367-----97777668722378999
Q 001419 286 LLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIF 340 (1080)
Q Consensus 286 ~~LEr~~LEplp~~~~~~~q~~~~~~~~~~~vs~dtve-----~ee~~~~Elgrr~ieif 340 (1080)
.+|+-+|.+.+.+ +.+.+. .+.++..++.+.|.+|.
T Consensus 77 ~ll~~~Ytg~i~l-------------------~~~~v~~ll~~A~~l~~~~L~~~C~~~L 117 (121)
T d1buoa_ 77 QILEYAYTATLQA-------------------KAEDLDDLLYAAEILEIEYLEEQCLKML 117 (121)
T ss_dssp HHHHHHHHSCCCC-------------------CGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHEECCCCCC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9977417462078-------------------6889999999999959889999999999
No 7
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.38 E-value=0.0013 Score=39.53 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=31.6
Q ss_pred CCCCC-EEEEEECEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 67667-17997115553201356777698886431001000101102
Q 001419 211 REKTD-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKT 256 (1080)
Q Consensus 211 KE~SD-VvLkV~vkKFyVsKnvLATlYMnSLLqgLy~Le~Fres~Ks 256 (1080)
|+.+| ||| .|.|.||||||+||.|++++.|++....
T Consensus 1 ~~~~G~vGL----------~NlGNTCy~NSvLQ~L~~~~~f~~~i~~ 37 (347)
T d1nbfa_ 1 KKHTGYVGL----------KNQGATCYMNSLLQTLFFTNQLRKAVYM 37 (347)
T ss_dssp CCSSSCCCB----------CCCSSCHHHHHHHHHHHTSHHHHHHHHT
T ss_pred CCCCCCCCC----------EECCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999997298----------6399656999999999847999999970
No 8
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.07 E-value=0.0031 Score=36.95 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=31.0
Q ss_pred CCCCCC-EEEEEECEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 467667-1799711555320135677769888643100100010110
Q 001419 210 SREKTD-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 210 SKE~SD-VvLkV~vkKFyVsKnvLATlYMnSLLqgLy~Le~Fres~K 255 (1080)
-++..+ ||| +|.|.||||||+||.|+.++.|++...
T Consensus 9 ~~~~~g~vGL----------~N~GNtCYlNSvLQ~L~~ip~f~~~l~ 45 (348)
T d2gfoa1 9 GGSGPALTGL----------RNLGNTCYMNSILQCLCNAPHLADYFN 45 (348)
T ss_dssp CCSSTTCCEE----------CCSSSCHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCCEECC----------CCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 7999782897----------359960299999999975899999997
No 9
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.33 E-value=0.0048 Score=35.63 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=27.5
Q ss_pred EEEEEECEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1799711555320135677769888643100100010110
Q 001419 216 AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 216 VvLkV~vkKFyVsKnvLATlYMnSLLqgLy~Le~Fres~K 255 (1080)
||| +|.|.||||||+||.|+++++|++...
T Consensus 7 ~GL----------~N~GNtCY~NSvLQ~L~~~p~f~~~l~ 36 (397)
T d1vjva_ 7 VGF----------KNMGNTCYLNATLQALYRVNDLRDMIL 36 (397)
T ss_dssp CEE----------CCCSSCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCC----------CCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 888----------888840799999999980899999998
No 10
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.19 E-value=0.005 Score=35.57 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=27.7
Q ss_pred C-EEEEEECEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7-1799711555320135677769888643100100010110
Q 001419 215 D-AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKK 255 (1080)
Q Consensus 215 D-VvLkV~vkKFyVsKnvLATlYMnSLLqgLy~Le~Fres~K 255 (1080)
| ||| +|.|.||||||+||.|++++.|++...
T Consensus 2 g~~GL----------~N~GNtCYlNSvLQ~L~~~p~fr~~ll 33 (336)
T d2hd5a1 2 GLAGL----------RNLGNTCFMNSILQCLSNTRELRDYCL 33 (336)
T ss_dssp CCCEE----------CCCSSCHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCC----------CCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 96398----------579963499999999982799999998
No 11
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.97 E-value=0.0055 Score=35.25 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=26.2
Q ss_pred EEEEEECEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 179971155532013567776988864310010001011
Q 001419 216 AILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSK 254 (1080)
Q Consensus 216 VvLkV~vkKFyVsKnvLATlYMnSLLqgLy~Le~Fres~ 254 (1080)
||| +|.|.||||||+||.|++++.|++..
T Consensus 5 ~GL----------~N~GNtCY~NSvLQ~L~~ip~~~~~l 33 (383)
T d2ayna1 5 CGL----------TNLGNTCYMNATVQCIRSVPELKDAL 33 (383)
T ss_dssp CEE----------CCCSSCHHHHHHHHHHHTCHHHHHHH
T ss_pred CCC----------CCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 585----------88984069999999997669999999
Done!