Query 001420
Match_columns 1079
No_of_seqs 369 out of 2008
Neff 5.1
Searched_HMMs 13730
Date Tue Mar 26 16:26:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001420.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_722-726//hhsearch_scop/001420hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1weoa_ g.44.1.1 (A:) Cellulos 100.0 1.4E-43 0 314.8 9.0 89 2-91 1-89 (93)
2 d1xhba2 c.68.1.17 (A:95-422) P 99.6 1.6E-13 1.2E-17 107.7 15.6 119 344-579 17-135 (328)
3 d1qg8a_ c.68.1.1 (A:) Spore co 99.1 1.3E-09 9.2E-14 80.9 11.7 129 349-599 1-133 (255)
4 d1omza_ c.68.1.15 (A:) Alpha-1 98.5 6.3E-08 4.6E-12 69.2 4.7 107 348-578 2-108 (265)
5 d2bo4a1 c.68.1.18 (A:2-382) Ma 96.0 0.039 2.8E-06 29.3 10.7 55 531-588 72-126 (381)
6 d1g25a_ g.44.1.1 (A:) TFIIH Ma 94.5 0.017 1.3E-06 31.8 3.8 55 16-72 2-56 (65)
7 d1ur6b_ g.44.1.1 (B:) Not-4 N- 94.4 0.011 8.2E-07 33.0 2.8 48 20-70 3-50 (52)
8 d1vyxa_ g.44.1.3 (A:) IE1B pro 92.5 0.063 4.6E-06 27.9 3.9 54 14-71 3-59 (60)
9 d1chca_ g.44.1.1 (A:) Immediat 85.4 0.72 5.2E-05 20.6 5.0 51 15-72 3-53 (68)
10 d1rmda2 g.44.1.1 (A:1-86) V(D) 83.8 0.62 4.5E-05 21.0 4.1 49 16-71 22-70 (86)
11 d1fbva4 g.44.1.1 (A:356-434) C 73.3 1.9 0.00014 17.7 4.8 49 17-72 23-71 (79)
12 d1v87a_ g.44.1.1 (A:) Deltex p 73.1 1.3 9.2E-05 18.9 3.0 60 12-71 20-94 (114)
13 d1weva_ g.50.1.2 (A:) PHD fing 70.7 0.71 5.2E-05 20.6 1.2 60 16-77 15-81 (88)
14 d1wima_ g.44.1.1 (A:) UbcM4-in 68.7 2.3 0.00017 17.1 3.5 53 15-71 3-62 (94)
15 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 66.9 2.2 0.00016 17.2 3.1 47 17-70 8-54 (78)
16 d1jm7a_ g.44.1.1 (A:) brca1 RI 59.1 3.5 0.00025 15.9 3.5 46 19-71 23-70 (103)
17 d1jm7b_ g.44.1.1 (B:) bard1 RI 56.3 3.8 0.00028 15.6 3.0 61 1-70 1-66 (97)
18 d2baya1 g.44.1.2 (A:1-56) Pre- 49.9 4.8 0.00035 14.9 2.5 46 19-71 2-47 (56)
19 d1iyma_ g.44.1.1 (A:) EL5 RING 49.8 4.8 0.00035 14.9 4.0 50 16-69 4-53 (55)
20 d1bora_ g.44.1.1 (A:) Acute pr 49.1 5 0.00036 14.8 3.0 49 16-75 5-53 (56)
21 d2c2la2 g.44.1.2 (A:225-304) S 48.0 5.2 0.00038 14.7 3.6 45 18-69 8-52 (80)
22 d1fo8a_ c.68.1.10 (A:) N-acety 40.7 6.6 0.00048 13.9 4.7 44 348-396 1-44 (343)
23 d1xbta2 g.39.1.14 (A:151-191) 38.4 4.9 0.00036 14.8 1.0 33 19-51 2-39 (41)
24 d1wgma_ g.44.1.2 (A:) Ubiquiti 35.4 8 0.00058 13.4 3.4 47 16-69 21-67 (98)
25 d1x61a2 g.39.1.3 (A:35-66) Thy 35.3 7 0.00051 13.8 1.4 29 19-53 1-29 (32)
26 d1mm2a_ g.50.1.2 (A:) Mi2-beta 32.7 8.8 0.00064 13.1 1.9 50 16-72 8-60 (61)
27 d3dplr1 g.44.1.1 (R:19-106) RI 30.9 9.4 0.00068 12.9 3.6 58 15-73 19-87 (88)
28 d1twfl_ g.41.9.2 (L:) RBP12 su 28.0 10 0.00076 12.6 1.8 27 18-46 5-31 (46)
29 d1zbdb_ g.50.1.1 (B:) Effector 27.9 11 0.00077 12.6 2.7 40 12-53 43-82 (124)
30 d2b8ta2 g.39.1.14 (A:150-216) 26.6 4.9 0.00036 14.8 -0.6 35 18-52 2-47 (67)
31 d1akya2 g.41.2.1 (A:131-168) M 24.2 10 0.00074 12.7 0.7 24 58-81 1-24 (38)
32 d1s3ga2 g.41.2.1 (A:126-160) M 23.5 8.7 0.00064 13.1 0.2 24 58-81 1-24 (35)
33 d1zina2 g.41.2.1 (A:126-160) M 21.3 10 0.00073 12.7 0.1 24 58-81 1-24 (35)
No 1
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=1.4e-43 Score=314.84 Aligned_cols=89 Identities=60% Similarity=1.281 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88888787644665887544347775457899930038999997451238989850798898870001134688754599
Q 001420 2 ESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd 81 (1079)
-|+|++++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 1 g~~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gD 80 (93)
T d1weoa_ 1 GSSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD 80 (93)
T ss_dssp CCCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS
T ss_pred CCCCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 98877799773451552201154632417899888875236986450789999851670274448724552589877787
Q ss_pred CCCCCCCCCC
Q ss_conf 8767888886
Q 001420 82 REEDGDADDG 91 (1079)
Q Consensus 82 ~e~e~~~dd~ 91 (1079)
++||++||-
T Consensus 81 -e~e~~~d~~ 89 (93)
T d1weoa_ 81 -EDEEDIDSG 89 (93)
T ss_dssp -CCCCCSCCC
T ss_pred -CCCCCCCCC
T ss_conf -100143468
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.55 E-value=1.6e-13 Score=107.66 Aligned_cols=119 Identities=16% Similarity=0.083 Sum_probs=89.1
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999731699936899999979999999998839799998389990599831426886544887422112333217888
Q 001420 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEP 423 (1079)
Q Consensus 344 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~Iep 423 (1079)
.++++|.|.|.||||| |....+..||-|++...||....-+.|.|||.+.-|.....
T Consensus 17 ~~~~~P~vSIIIp~yN---e~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l-------------------- 73 (328)
T d1xhba2 17 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL-------------------- 73 (328)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH--------------------
T ss_pred CCCCCCCEEEEEECCC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHH--------------------
T ss_conf 8999998899992267---81799999999999647777972999997999703579999--------------------
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 99111110012323487881359999999999999999997767642058734433468998999988889310010014
Q 001420 424 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 503 (1079)
Q Consensus 424 RaPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~ 503 (1079)
+++. ++
T Consensus 74 ---------------------------------~~~~-------~~---------------------------------- 79 (328)
T d1xhba2 74 ---------------------------------ESYV-------KK---------------------------------- 79 (328)
T ss_dssp ---------------------------------HHHH-------HS----------------------------------
T ss_pred ---------------------------------HHHH-------HH----------------------------------
T ss_conf ---------------------------------9999-------85----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 6999788889878389998025999886740225699998600257997899943899879369999999844289
Q 001420 504 ENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 504 ~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~DP 579 (1079)
.-+.+.++..++..| .|+|.|.+++. ++|+||+.+|+|.. ..|++|.+.+-.|.+.
T Consensus 80 ----------~~~~i~vi~~~~n~G-----~~~a~N~Gi~~----a~gd~i~flD~D~~-~~p~~l~~l~~~~~~~ 135 (328)
T d1xhba2 80 ----------LKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHD 135 (328)
T ss_dssp ----------SSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHC
T ss_pred ----------CCCCEEEEEECCCCC-----CHHHHHHHHHH----HHCCEEEECCCCCC-CCHHHHHHHHHHHHCC
T ss_conf ----------689709997324432-----16887899986----31100220176556-6736999999999638
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=99.07 E-value=1.3e-09 Score=80.88 Aligned_cols=129 Identities=12% Similarity=0.218 Sum_probs=91.3
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 73169993689999997999999999883979999838999059983142688654488742211233321788899111
Q 001420 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepRaPe~ 428 (1079)
|.|.|+||||| ++ ..+.+|+.|++.++|| .+.++|.|||..+-|.+.+.+- + ++.
T Consensus 1 P~vSiiip~yN---~~-~~l~~~l~Si~~Qt~~--~~eiivvdd~S~d~t~~~l~~~---~-------~~~--------- 55 (255)
T d1qg8a_ 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRPF---L-------NDN--------- 55 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGGG---G-------GST---------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHHH---H-------HHC---------
T ss_conf 97999996279---88-9999999999828899--8599999898973189999996---4-------301---------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 11001232348788135999999999999999999776764205873443346899899998888931001001469997
Q 001420 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~~g~~ 508 (1079)
T Consensus 56 -------------------------------------------------------------------------------- 55 (255)
T d1qg8a_ 56 -------------------------------------------------------------------------------- 55 (255)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCEEEEECCCC---CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCCE
Q ss_conf 888898783899980259---99886740225699998600257997899943899879369999999844-28999941
Q 001420 509 DAEGNELPRLVYVSREKR---PGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekr---pg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff-~DP~~g~~ 584 (1079)
++.++.-+.. .......+++|+|.++.. ++|+||+.+|+|.. ..|++|.+.+-+| .+| +
T Consensus 56 --------~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~p~~l~~~~~~~~~~~----~ 118 (255)
T d1qg8a_ 56 --------RVRFYQSDISGVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP----E 118 (255)
T ss_dssp --------TEEEEECCCCSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC----CCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCC----C
T ss_conf --------2221111234543223210000122222234----56663433366532-00255889999998498----7
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 899903720249996
Q 001420 585 VCYVQFPQRFDGIDR 599 (1079)
Q Consensus 585 v~~VQ~PQ~F~nid~ 599 (1079)
+++|...++..+.+.
T Consensus 119 ~~~v~~~~~~~~~~~ 133 (255)
T d1qg8a_ 119 KAVIYSASKTYHLNE 133 (255)
T ss_dssp CCEEEEEEEEEEEC-
T ss_pred CCEEEECCEEEEECC
T ss_conf 776863103533078
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.48 E-value=6.3e-08 Score=69.18 Aligned_cols=107 Identities=16% Similarity=0.055 Sum_probs=75.0
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 97316999368999999799999999988397999983899905998314268865448874221123332178889911
Q 001420 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (1079)
Q Consensus 348 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepRaPe 427 (1079)
|-+..|.||||| + +..+..+|.|+++++||.+ +.|.||+++.-|.+.+.+
T Consensus 2 ~~~~tvii~tyn---~-~~~l~~~l~sl~~q~~~~~---~iiV~d~~sd~~~~~i~~----------------------- 51 (265)
T d1omza_ 2 LDSFTLIMQTYN---R-TDLLLRLLNHYQAVPSLHK---VIVVWNNVGEKGPEELWN----------------------- 51 (265)
T ss_dssp TTCEEEEEEESS---C-HHHHHHHHHHHTTSTTEEE---EEEEECCTTCCCTHHHHH-----------------------
T ss_pred CCCEEEEEECCC---C-HHHHHHHHHHHHCCCCCCE---EEEEECCCCCCCHHHHHH-----------------------
T ss_conf 886899997279---9-8999999999973899596---999989899960999998-----------------------
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 11100123234878813599999999999999999977676420587344334689989999888893100100146999
Q 001420 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (1079)
Q Consensus 428 ~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~~g~ 507 (1079)
+.. ++
T Consensus 52 -----------------------------------------~~~---------------------~~------------- 56 (265)
T d1omza_ 52 -----------------------------------------SLG---------------------PH------------- 56 (265)
T ss_dssp -----------------------------------------HTC---------------------CC-------------
T ss_pred -----------------------------------------HHC---------------------CC-------------
T ss_conf -----------------------------------------753---------------------56-------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf 78888987838999802599988674022569999860025799789994389987936999999984428
Q 001420 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 508 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~D 578 (1079)
+..++... ++..+++|+|+++.. ..|+||+.+|+|.. ..|++|.+.+-.+.+
T Consensus 57 --------~~~~~~~~------~~~g~~~a~n~~~~~----a~ge~i~~lD~D~~-~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 57 --------PIPVIFKP------QTANKMRNRLQVFPE----VETNAVLMVDDDTL-ISAQDLVFAFSIWQQ 108 (265)
T ss_dssp --------SSCEEEEE------CSSCCGGGGGSCCTT----CCSSEEEEECTTEE-ECHHHHHHHHHHHTT
T ss_pred --------CEEEEEEC------CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHH
T ss_conf --------53898723------788823454254886----89678999676557-787999999999985
No 5
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=96.02 E-value=0.039 Score=29.31 Aligned_cols=55 Identities=16% Similarity=-0.054 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 6740225699998600257997899943899879369999999844289999418999
Q 001420 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 531 hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~DP~~g~~v~~V 588 (1079)
...|..++.++++.....+.|++|+.+|||-.-..|+.+...+.-+.+ |.++..-
T Consensus 72 ~~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~---g~d~V~g 126 (381)
T d2bo4a1 72 RPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF---GYGLVRH 126 (381)
T ss_dssp SSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT---TCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HCCEEEE
T ss_conf 578848899999999970888889997587676779999999998763---0575898
No 6
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.51 E-value=0.017 Score=31.75 Aligned_cols=55 Identities=25% Similarity=0.584 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 887544347775457899930038999997451238989850798898870001134
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 72 (1079)
....|.||-++.....+...++ ..|+-..|+.|.+--.+.+++.||.|+++.++.
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~--~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~ 56 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMV--NVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEE--CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCCCCCCCCEEECCCCEEEEE--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9899870882600399567984--763727648899998570819799998681304
No 7
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.44 E-value=0.011 Score=33.02 Aligned_cols=48 Identities=33% Similarity=0.977 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 443477754578999300389999974512389898507988988700011
Q 001420 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 70 (1079)
|.||-++.. .+...++.+ .|+-.+|+.|+..-.+.++..||.|+++|.
T Consensus 3 CpICl~~~~--~~~~~~~~~-~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~ 50 (52)
T d1ur6b_ 3 CPLCMEPLE--IDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYP 50 (52)
T ss_dssp ETTTTEECC--GGGTTCCSS-SSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred CCCCCHHHH--CCCCEEEEC-CCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 958782351--898259866-997704558999999664898986579488
No 8
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=92.46 E-value=0.063 Score=27.87 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCHHHHHHHHH-HCCCCCCCCCCCCCC
Q ss_conf 65887544347775457899930038--99999745123898985-079889887000113
Q 001420 14 NVGGQVCQICGDNVGKTVDGNPFVAC--DVCAFPVCRPCYEYERK-DGNQSCPQCKTRYKK 71 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~~fvaC--~eC~fpvCr~Cyeyerk-eG~~~CpqCkt~Ykr 71 (1079)
.-...+|.||-++.. ++...+| ..|+--+++.|.+-=.+ .++..||.|+++|+-
T Consensus 3 ded~~~C~IC~~~~~----~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 3 DEDVPVCWICNEELG----NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS----CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCCCCCCCCCC----CCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 888999923886277----751673145897788738999999710789889166971242
No 9
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=85.42 E-value=0.72 Score=20.59 Aligned_cols=51 Identities=22% Similarity=0.528 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5887544347775457899930038999997451238989850798898870001134
Q 001420 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 72 (1079)
..+..|.||-+.+.. .+.+..|+---|..|.+-=.+. +..||-|+++....
T Consensus 3 ~~~d~C~IC~~~~~~------~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~~ 53 (68)
T d1chca_ 3 TVAERCPICLEDPSN------YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS------CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCCCCCCCCCCC------CCEEECCCCCCCHHHHHHHHHH-CCCCCCCCCCHHHH
T ss_conf 979999449939668------8388289991768999999982-99088878163724
No 10
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=83.84 E-value=0.62 Score=21.01 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88754434777545789993003899999745123898985079889887000113
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 71 (1079)
+.-.|.||-|.. -++.+ - .||---|+.|-+--.+.++..||.|+.++..
T Consensus 22 ~~l~C~IC~~~~-----~~pv~-~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~ 70 (86)
T d1rmda2 22 KSISCQICEHIL-----ADPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (86)
T ss_dssp HHTBCTTTCSBC-----SSEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCH-----HCCEE-C-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 675995678444-----15552-6-7887631999999996487907036997996
No 11
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.28 E-value=1.9 Score=17.73 Aligned_cols=49 Identities=27% Similarity=0.664 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 87544347775457899930038999997451238989850798898870001134
Q 001420 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 72 (1079)
-.+|.||-|..- ++.+ ..||--.|+.|.+-=.+++++.||=|+...++.
T Consensus 23 ~~~C~IC~~~~~-----~~~~--~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~ 71 (79)
T d1fbva4 23 FQLCKICAENDK-----DVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71 (79)
T ss_dssp TTBCTTTSSSBC-----CEEC--SSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred CCCCCCCCCCCC-----CEEE--ECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 899935897689-----9699--589993529999999997858189979586477
No 12
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=73.13 E-value=1.3 Score=18.90 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCCCCCCCC-----------CCCCEECCCCCCCCCCHHHHHHHHH----HCCCCCCCCCCCCCC
Q ss_conf 46658875443477754578-----------9993003899999745123898985----079889887000113
Q 001420 12 IKNVGGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTRYKK 71 (1079)
Q Consensus 12 ~~~~~~~~CqiCgd~vg~~~-----------~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CpqCkt~Ykr 71 (1079)
++......|.||-+++.... ..+..+..-.|+--.|..|.+-=.+ +|+-.||-|++.|-.
T Consensus 20 ~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred HCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
T ss_conf 604656534530100013444335433345455434687999990569999999996675789766550122066
No 13
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.68 E-value=0.71 Score=20.62 Aligned_cols=60 Identities=20% Similarity=0.443 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHH----HH--H-HHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8875443477754578999300389999974512389----89--8-5079889887000113468875
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE----YE--R-KDGNQSCPQCKTRYKKHKGSPA 77 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye----ye--r-keG~~~CpqCkt~Ykr~kgspr 77 (1079)
....|.||+... ..++..+|.|..|.-..=-.|+. .+ . .++.=.||+|+...++.+.+++
T Consensus 15 ~~~~C~iC~~~~--~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~~~~~ 81 (88)
T d1weva_ 15 MGLACVVCRQMT--VASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQ 81 (88)
T ss_dssp HCCSCSSSCCCC--CCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCC
T ss_pred CCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCC
T ss_conf 859925789906--7899968884899974561127985554334558983899445733765552158
No 14
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.67 E-value=2.3 Score=17.05 Aligned_cols=53 Identities=21% Similarity=0.467 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHH----HHHCCC---CCCCCCCCCCC
Q ss_conf 5887544347775457899930038999997451238989----850798---89887000113
Q 001420 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE----RKDGNQ---SCPQCKTRYKK 71 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye----rkeG~~---~CpqCkt~Ykr 71 (1079)
....-|.||-+++- ++.++....|+-..|+.|...- .+||+. .||+|+-+.+.
T Consensus 3 ~~~~~C~IC~~~~~----~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~ 62 (94)
T d1wima_ 3 SGSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCCCCCCCCCCCC----CCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98984931798360----7755777899998488179999999985179665589199988786
No 15
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=66.85 E-value=2.2 Score=17.17 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 875443477754578999300389999974512389898507988988700011
Q 001420 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 70 (1079)
--.|.||.+-. . ++.+ . .||.-.||.|.+--.+.++..||.|+.+..
T Consensus 8 ~l~CpIc~~~m-~----dPV~-~-~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~ 54 (78)
T d1t1ha_ 8 YFRCPISLELM-K----DPVI-V-STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCC-S----SEEE-E-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCCCCCCCCHH-H----CCEE-C-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 27991718121-0----8337-2-677743399999999988887886556377
No 16
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.07 E-value=3.5 Score=15.87 Aligned_cols=46 Identities=33% Similarity=0.730 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHH--HHHCCCCCCCCCCCCCC
Q ss_conf 544347775457899930038999997451238989--85079889887000113
Q 001420 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE--RKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye--rkeG~~~CpqCkt~Ykr 71 (1079)
.|.||-+.. . ++.. . .||--.|+.|.+.- ++.+.-.||.|++++..
T Consensus 23 ~CpIC~~~~-~----~pv~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (103)
T d1jm7a_ 23 ECPICLELI-K----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (103)
T ss_dssp SCSSSCCCC-S----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCCCHH-C----CEEE-C-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 997218231-8----9188-3-799864167899999977999809698883875
No 17
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.34 E-value=3.8 Score=15.57 Aligned_cols=61 Identities=23% Similarity=0.482 Sum_probs=36.7
Q ss_pred CCCCCCCCCCC----CCCCCCC-CCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98888878764----4665887-5443477754578999300389999974512389898507988988700011
Q 001420 1 MESEGETGVKS----IKNVGGQ-VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~-~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 70 (1079)
|+-.++.+... +..+... .|.||-+..- ++.+ +-.||.-.|+.|.+-- -+ ..||.|+.+..
T Consensus 1 ~~p~~~~~~~~~~~~l~~l~~~l~C~IC~~~~~-----~pv~-~~~CgH~fC~~Ci~~~--~~-~~CP~Cr~~~~ 66 (97)
T d1jm7b_ 1 MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILR-----EPVC-LGGCEHIFCSNCVSDC--IG-TGCPVCYTPAW 66 (97)
T ss_dssp CCSSTTCCCHHHHHHHHHHHHTTSCSSSCSCCS-----SCBC-CCSSSCCBCTTTGGGG--TT-TBCSSSCCBCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH-----CCCE-ECCCCCCHHHHHHHHH--HH-CCCCCCCCCCC
T ss_conf 998866650767999996212289925872211-----2746-5889993029999999--85-36662278676
No 18
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.90 E-value=4.8 Score=14.89 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 54434777545789993003899999745123898985079889887000113
Q 001420 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 71 (1079)
+|.||++-. -++.+. ..||.--||.|-+.-.++ ++.||.|+++-..
T Consensus 2 ~C~Ic~~~~-----~~Pv~~-~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~ 47 (56)
T d2baya1 2 LCAISGKVP-----RRPVLS-PKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 47 (56)
T ss_dssp CCTTTCSCC-----SSEEEE-TTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CCCCCCCHH-----HHCCCC-CCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCH
T ss_conf 993678568-----865745-789984559999998760-3679854781887
No 19
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=49.77 E-value=4.8 Score=14.87 Aligned_cols=50 Identities=18% Similarity=0.438 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 887544347775457899930038999997451238989850798898870001
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 69 (1079)
.+..|.||=|+... |+..+-+..|+---|..|. .+.-+-++.||-|+.+.
T Consensus 4 d~~~C~ICl~~~~~---~~~~~~l~~C~H~Fh~~Ci-~~Wl~~~~~CP~CR~~i 53 (55)
T d1iyma_ 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECV-DMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHH-HHTTTTCCSCSSSCCCS
T ss_pred CCCCCEEECCCCCC---CCEEEEECCCCCCCCHHHH-HHHHHHCCCCCCCCCEE
T ss_conf 99998497900107---9889990898981059999-99998499387889784
No 20
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.11 E-value=5 Score=14.81 Aligned_cols=49 Identities=20% Similarity=0.524 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 887544347775457899930038999997451238989850798898870001134688
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgs 75 (1079)
..-.|.||.|..- +. ... .|+--.|+.|.+ ..+..||-|+.+....++-
T Consensus 5 ~~l~C~IC~~~~~---~p-~~l---pCgH~fC~~Ci~----~~~~~CP~Cr~~~~~~~~~ 53 (56)
T d1bora_ 5 QFLRCQQCQAEAK---CP-KLL---PCLHTLCSGCLE----ASGMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCSSCSSSCSSCB---CC-SCS---TTSCCSBTTTCS----SSSSSCSSCCSSSSCCSSC
T ss_pred CCCCCCCCCCCCC---CC-EEE---CCCCHHHHHHHH----CCCCCCCCCCCCCCCCCCC
T ss_conf 7889840294158---97-890---177778599887----2979684979966699898
No 21
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.02 E-value=5.2 Score=14.69 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7544347775457899930038999997451238989850798898870001
Q 001420 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 69 (1079)
-.|.||.+- +. ++.+. .||.-.||.|-+--...++..||.|+++-
T Consensus 8 l~CpIc~~l-~~----dPv~~--~cGhtfc~~ci~~~l~~~~~~cP~c~~~l 52 (80)
T d2c2la2 8 LCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPL 52 (80)
T ss_dssp TBCTTTCSB-CS----SEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCCCCCCH-HH----HHCCC--CCCCEECHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 118583732-34----03305--88685638899999863776578756665
No 22
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=40.71 E-value=6.6 Score=13.95 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCH
Q ss_conf 9731699936899999979999999998839799998389990599831
Q 001420 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 348 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
+|-|-|.|-+|| -| . +.+|+.|++...-..++..+||+-||...
T Consensus 1 ~~viPVlv~a~N---RP-~-l~r~LesLlk~~p~~~~~~I~Vs~DG~~~ 44 (343)
T d1fo8a_ 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCCCCEEEEECC---HH-H-HHHHHHHHHHCCCCCCCCCEEEEECCCCH
T ss_conf 983048999757---78-8-99999999842755668538999649954
No 23
>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.40 E-value=4.9 Score=14.83 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCC----CCCC-CEECCCCCCCCCCHHHH
Q ss_conf 544347775457----8999-30038999997451238
Q 001420 19 VCQICGDNVGKT----VDGN-PFVACDVCAFPVCRPCY 51 (1079)
Q Consensus 19 ~CqiCgd~vg~~----~~G~-~fvaC~eC~fpvCr~Cy 51 (1079)
+|.+||.+.-.+ .+++ ..|.-.|==-|+||.||
T Consensus 2 vC~~Cg~~A~ft~R~~~~~~~v~IGg~d~Y~~~CR~cy 39 (41)
T d1xbta2 2 VCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCY 39 (41)
T ss_dssp ECTTTCSEECEEEECSCCCSSCCCCSTTTEEEECHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCEEEECCCCCEEEHHHHHH
T ss_conf 99778990457899849999799889886986244631
No 24
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.36 E-value=8 Score=13.39 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 887544347775457899930038999997451238989850798898870001
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 69 (1079)
..-+|.||++=. -++.+.. .|+.-.||.|.+--.+. ++.||.|+++.
T Consensus 21 ~~f~CPI~~~lm-----~dPV~~~-~~~~ty~r~~I~~~l~~-~~~~P~~~~~l 67 (98)
T d1wgma_ 21 DEFLDPIMSTLM-----CDPVVLP-SSRVTVDRSTIARHLLS-DQTDPFNRSPL 67 (98)
T ss_dssp TTTBCTTTCSBC-----SSEEECT-TTCCEEEHHHHHHHTTT-SCBCTTTCSBC
T ss_pred HHHCCCCCHHHH-----HHHHHCC-CCCCHHHHHHHHHHHHH-CCCCCCCCCCC
T ss_conf 774886734688-----7777623-55320149999999870-68766555666
No 25
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.33 E-value=7 Score=13.77 Aligned_cols=29 Identities=34% Similarity=0.838 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH
Q ss_conf 54434777545789993003899999745123898
Q 001420 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY 53 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey 53 (1079)
+|.+|+.+ -+|++|-|-.-=+| |.|||.-
T Consensus 1 vC~tC~~k----LRGqpFYAvekkay--CE~CYi~ 29 (32)
T d1x61a2 1 VCSTCRAQ----LRGQHFYAVERRAY--CEGCYVA 29 (32)
T ss_dssp BCSSSCCB----CTTSCEEESSSCEE--EHHHHHH
T ss_pred CEEEECCE----ECCCCCEEEECCCC--CCCEEEE
T ss_conf 93580745----15880358621103--5630666
No 26
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.73 E-value=8.8 Score=13.11 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHH---HCCCCCCCCCCCCCCC
Q ss_conf 88754434777545789993003899999745123898985---0798898870001134
Q 001420 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK---DGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk---eG~~~CpqCkt~Ykr~ 72 (1079)
+..+|++|++ +...|.|..|..-..-.|.....+ ++.=.||.|+..-.+.
T Consensus 8 ~~~~C~~C~~-------~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~kg 60 (61)
T d1mm2a_ 8 HMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60 (61)
T ss_dssp SCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred CCCCCCCCCC-------CCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf 8689867899-------7958886999960761145888575899768997883845679
No 27
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.88 E-value=9.4 Score=12.90 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCCCC-----------CCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 58875443477754578-----------999300389999974512389898507988988700011346
Q 001420 15 VGGQVCQICGDNVGKTV-----------DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHK 73 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~-----------~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~k 73 (1079)
.....|.||-++..... +...-+.+..|+=--|..|- ..--+-++.||-|+..+...|
T Consensus 19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci-~~Wl~~~~~CP~CR~~~~~~~ 87 (88)
T d3dplr1 19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI-SRWLKTRQVCPLDNREWEFQK 87 (88)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHH-HHHHTTCSBCSSSCSBCCEEE
T ss_pred CCCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH-HHHHHHCCCCCCCCCCCCCCC
T ss_conf 899828783602418654323333213355687287265474657999-999987996878897231224
No 28
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.03 E-value=10 Score=12.58 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 75443477754578999300389999974
Q 001420 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
-+|.-||.++.+... .-+-|.|||+.|
T Consensus 5 YiCgeCg~~~~l~~~--d~irCreCG~RI 31 (46)
T d1twfl_ 5 YICAECSSKLSLSRT--DAVRCKDCGHRI 31 (46)
T ss_dssp EECSSSCCEECCCTT--STTCCSSSCCCC
T ss_pred EECCCCCCCEEECCC--CCEEECCCCCEE
T ss_conf 985468981076899--968811188587
No 29
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.86 E-value=11 Score=12.56 Aligned_cols=40 Identities=28% Similarity=0.630 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH
Q ss_conf 466588754434777545789993003899999745123898
Q 001420 12 IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEY 53 (1079)
Q Consensus 12 ~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey 53 (1079)
+...+...|.+|+-..+... .--..|..|+.-||+.|-.+
T Consensus 43 ~~~~~~~~C~~C~~~f~~~~--~~~~~C~~C~~~~C~~C~~~ 82 (124)
T d1zbdb_ 43 VAGDGVNRCILCGEQLGMLG--SASVVCEDCKKNVCTKCGVE 82 (124)
T ss_dssp CCSCSSSBCSSSCCBCSTTS--CCEEECTTTCCEEETTSEEE
T ss_pred HHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf 21367985834597334789--99886724786011588777
No 30
>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=26.59 E-value=4.9 Score=14.84 Aligned_cols=35 Identities=20% Similarity=0.555 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCC----------CCC-CEECCCCCCCCCCHHHHH
Q ss_conf 75443477754578----------999-300389999974512389
Q 001420 18 QVCQICGDNVGKTV----------DGN-PFVACDVCAFPVCRPCYE 52 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~----------~G~-~fvaC~eC~fpvCr~Cye 52 (1079)
.||..||.+.-.+. +|+ ..|..+|===|+||.||+
T Consensus 2 AIC~~CG~~A~~t~R~~~~~~~~~~g~~i~IGg~e~Y~a~CR~cy~ 47 (67)
T d2b8ta2 2 AICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHK 47 (67)
T ss_dssp EECTTTCSEECEEEEEETTEECCTTSCSCCCCSTTTEEEECGGGCC
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEHHHHHCC
T ss_conf 4866598912047988389876557997886787507612055355
No 31
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.25 E-value=10 Score=12.66 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 798898870001134688754599
Q 001420 58 GNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 58 G~~~CpqCkt~Ykr~kgsprv~gd 81 (1079)
|+..||.|++-|-..---|+++|-
T Consensus 1 GRr~C~~cG~~Yh~~~~ppk~~g~ 24 (38)
T d1akya2 1 GRLIHPASGRSYHKIFNPPKEDMK 24 (38)
T ss_dssp TEEECTTTCCEEETTTBCCSSTTB
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 966884746645442358676784
No 32
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=23.45 E-value=8.7 Score=13.11 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 798898870001134688754599
Q 001420 58 GNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 58 G~~~CpqCkt~Ykr~kgsprv~gd 81 (1079)
|+..||.|++-|-..---|.++|-
T Consensus 1 GR~~C~~CG~~Yh~~~~pPk~~g~ 24 (35)
T d1s3ga2 1 GRRICKVCGTSYHLLFNPPQVEGK 24 (35)
T ss_dssp SEEEETTTCCEEETTTBCCSBTTB
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 966885747511456679888883
No 33
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.34 E-value=10 Score=12.71 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 798898870001134688754599
Q 001420 58 GNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 58 G~~~CpqCkt~Ykr~kgsprv~gd 81 (1079)
|+..||.|++-|-..---|+++|-
T Consensus 1 GRr~C~~CG~~Yh~~~~pPk~~g~ 24 (35)
T d1zina2 1 GRRICRNCGATYHLIFHPPAKPGV 24 (35)
T ss_dssp TEEEETTTCCEEETTTBCCSSTTB
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 965886767521265679887884
Done!