Query 001421
Match_columns 1079
No_of_seqs 414 out of 2008
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 00:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 2E-317 5E-322 2811.7 85.5 1077 1-1079 1-1079(1079)
2 PLN02400 cellulose synthase 100.0 7E-316 2E-320 2799.4 82.4 1056 3-1079 22-1085(1085)
3 PLN02436 cellulose synthase A 100.0 2E-312 5E-317 2758.4 84.1 1059 4-1079 23-1093(1094)
4 PLN02915 cellulose synthase A 100.0 5E-299 1E-303 2646.2 80.2 1015 1-1079 1-1044(1044)
5 PLN02189 cellulose synthase 100.0 2E-294 3E-299 2606.8 81.5 1010 6-1079 23-1040(1040)
6 PLN02195 cellulose synthase A 100.0 2E-282 4E-287 2492.3 79.0 971 14-1079 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 2E-243 3E-248 2166.7 74.2 929 8-1066 115-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 3E-216 7E-221 1885.3 49.9 719 351-1073 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 2E-196 4E-201 1720.6 62.8 726 253-1058 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 2E-188 5E-193 1660.1 65.3 707 252-1056 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 1.3E-67 2.9E-72 643.0 47.9 495 272-1036 57-568 (713)
12 PRK11498 bcsA cellulose syntha 100.0 2.2E-67 4.8E-72 642.3 45.9 478 273-1036 188-681 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 7.2E-45 1.6E-49 320.7 4.6 80 9-89 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 6.3E-36 1.4E-40 362.0 47.1 362 270-875 40-420 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 8.8E-34 1.9E-38 308.0 22.0 182 516-827 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 1.5E-30 3.2E-35 297.3 28.1 233 348-831 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 1.9E-28 4.1E-33 284.9 33.3 233 346-832 72-307 (444)
18 PRK11204 N-glycosyltransferase 100.0 5E-27 1.1E-31 269.4 33.2 236 345-832 50-286 (420)
19 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 2.6E-27 5.6E-32 275.2 30.8 293 345-883 45-341 (439)
20 PRK14716 bacteriophage N4 adso 99.9 6.3E-25 1.4E-29 258.7 32.1 265 347-857 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 6.6E-25 1.4E-29 228.5 20.1 229 349-829 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 6.4E-24 1.4E-28 259.2 29.0 171 532-831 132-335 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 2.8E-24 6.1E-29 226.1 21.0 229 349-825 1-232 (232)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 7.3E-23 1.6E-27 214.9 21.8 173 518-831 58-234 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 7.8E-23 1.7E-27 217.3 20.9 231 349-831 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 6.5E-23 1.4E-27 213.9 8.8 224 349-824 1-228 (228)
27 TIGR03472 HpnI hopanoid biosyn 99.8 1.5E-19 3.3E-24 206.0 24.2 235 346-825 38-272 (373)
28 cd04190 Chitin_synth_C C-termi 99.8 1.8E-20 3.9E-25 201.1 11.5 52 774-827 190-243 (244)
29 PRK15489 nfrB bacteriophage N4 99.8 1.7E-18 3.8E-23 210.0 29.8 171 532-830 140-342 (703)
30 cd04192 GT_2_like_e Subfamily 99.8 5.4E-19 1.2E-23 182.9 17.6 226 353-824 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 1.8E-18 4E-23 178.4 17.3 124 532-824 72-195 (196)
32 COG2943 MdoH Membrane glycosyl 99.8 2.4E-15 5.3E-20 172.3 38.3 215 517-875 213-439 (736)
33 cd06434 GT2_HAS Hyaluronan syn 99.8 1.4E-17 3E-22 174.4 18.7 58 532-598 63-120 (235)
34 cd06439 CESA_like_1 CESA_like_ 99.7 6.9E-17 1.5E-21 171.3 20.0 127 345-597 25-151 (251)
35 TIGR03469 HonB hopene-associat 99.7 2.4E-16 5.3E-21 180.6 25.8 133 345-591 36-169 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.7 5E-15 1.1E-19 155.2 20.0 75 723-831 159-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.6 2.1E-15 4.6E-20 154.7 13.5 138 553-825 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 1.2E-13 2.6E-18 142.7 13.3 115 517-638 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 8.9E-13 1.9E-17 134.6 12.1 61 532-598 62-123 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 7.9E-12 1.7E-16 127.8 16.3 122 349-594 1-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.4 2.3E-11 4.9E-16 124.6 17.1 65 518-596 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 5E-11 1.1E-15 123.6 10.6 155 531-823 15-175 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 3.8E-10 8.3E-15 113.8 16.1 55 533-596 62-117 (202)
44 PF03142 Chitin_synth_2: Chiti 99.2 4E-09 8.6E-14 125.6 25.0 53 775-829 324-378 (527)
45 cd04196 GT_2_like_d Subfamily 99.1 1.1E-09 2.4E-14 112.3 15.7 64 518-595 56-120 (214)
46 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 3.2E-09 6.9E-14 117.3 19.3 110 353-579 2-112 (299)
47 cd04186 GT_2_like_c Subfamily 99.1 4E-09 8.6E-14 103.3 15.3 50 533-591 61-111 (166)
48 cd06420 GT2_Chondriotin_Pol_N 99.0 6.5E-09 1.4E-13 104.7 16.8 41 533-579 66-106 (182)
49 cd02522 GT_2_like_a GT_2_like_ 99.0 6E-09 1.3E-13 108.1 16.9 41 534-579 60-100 (221)
50 PF14570 zf-RING_4: RING/Ubox 99.0 1.8E-10 3.8E-15 95.5 3.0 48 20-70 1-48 (48)
51 cd06423 CESA_like CESA_like is 99.0 6.2E-09 1.3E-13 100.7 13.3 63 518-594 55-118 (180)
52 PLN02726 dolichyl-phosphate be 99.0 2E-08 4.4E-13 107.6 17.7 60 518-591 70-129 (243)
53 cd02526 GT2_RfbF_like RfbF is 98.9 8.7E-09 1.9E-13 108.3 13.5 65 518-594 49-117 (237)
54 cd06913 beta3GnTL1_like Beta 1 98.9 2E-08 4.3E-13 105.3 15.8 41 353-398 1-41 (219)
55 cd06442 DPM1_like DPM1_like re 98.9 4.2E-08 9E-13 102.1 17.5 60 518-591 55-114 (224)
56 PF00535 Glycos_transf_2: Glyc 98.9 1.9E-09 4.1E-14 104.6 6.7 111 517-639 54-166 (169)
57 cd04185 GT_2_like_b Subfamily 98.9 2.4E-08 5.3E-13 102.8 14.7 60 518-588 53-112 (202)
58 cd04188 DPG_synthase DPG_synth 98.6 4.1E-07 8.9E-12 94.8 13.8 60 519-592 60-119 (211)
59 PRK10073 putative glycosyl tra 98.6 7.4E-07 1.6E-11 101.1 16.2 110 347-579 4-113 (328)
60 cd04179 DPM_DPG-synthase_like 98.6 4E-07 8.6E-12 91.8 11.6 65 518-596 56-120 (185)
61 PRK10018 putative glycosyl tra 98.6 2.1E-06 4.6E-11 95.6 17.8 53 516-578 60-112 (279)
62 TIGR01556 rhamnosyltran L-rham 98.5 1.9E-06 4.1E-11 94.4 16.6 68 517-594 46-113 (281)
63 PRK10063 putative glycosyl tra 98.4 6.2E-06 1.3E-10 90.1 17.5 47 349-399 1-48 (248)
64 KOG2571 Chitin synthase/hyalur 98.4 3.4E-06 7.5E-11 104.5 16.0 50 775-826 549-598 (862)
65 cd00761 Glyco_tranf_GTA_type G 98.4 6.6E-06 1.4E-10 77.7 13.8 51 532-591 63-114 (156)
66 cd04187 DPM1_like_bac Bacteria 98.3 3.9E-06 8.5E-11 85.1 11.7 104 517-639 56-160 (181)
67 PF10111 Glyco_tranf_2_2: Glyc 98.3 2.1E-05 4.6E-10 87.2 16.7 62 533-600 75-136 (281)
68 COG1216 Predicted glycosyltran 98.3 2.6E-05 5.7E-10 87.3 17.5 69 516-596 56-126 (305)
69 PTZ00260 dolichyl-phosphate be 98.2 3.9E-05 8.6E-10 87.5 16.1 41 533-578 149-189 (333)
70 PRK13915 putative glucosyl-3-p 98.0 3.1E-05 6.7E-10 87.4 11.8 50 533-590 102-152 (306)
71 KOG2547 Ceramide glucosyltrans 97.4 0.0039 8.5E-08 71.5 15.7 159 531-823 155-314 (431)
72 PRK10714 undecaprenyl phosphat 97.4 0.0016 3.6E-08 74.1 12.6 40 533-577 77-116 (325)
73 COG0463 WcaA Glycosyltransfera 97.0 0.006 1.3E-07 58.4 10.6 44 348-397 2-45 (291)
74 cd02511 Beta4Glucosyltransfera 97.0 0.0062 1.3E-07 65.2 11.7 41 534-579 59-99 (229)
75 COG5175 MOT2 Transcriptional r 96.7 0.00078 1.7E-08 75.5 2.2 48 19-69 16-63 (480)
76 TIGR00570 cdk7 CDK-activating 95.8 0.0095 2.1E-07 67.5 4.8 61 16-78 2-62 (309)
77 cd02514 GT13_GLCNAC-TI GT13_GL 95.1 0.23 5E-06 57.4 13.0 41 352-396 3-43 (334)
78 PF14446 Prok-RING_1: Prokaryo 95.0 0.015 3.3E-07 50.0 2.3 46 16-69 4-51 (54)
79 PF02364 Glucan_synthase: 1,3- 91.5 2.3 5E-05 54.2 13.9 74 775-854 409-483 (817)
80 cd00162 RING RING-finger (Real 89.3 0.38 8.2E-06 37.6 3.0 44 19-68 1-44 (45)
81 KOG2978 Dolichol-phosphate man 89.1 2.2 4.8E-05 45.8 9.3 52 517-578 64-115 (238)
82 PF05290 Baculo_IE-1: Baculovi 88.5 0.3 6.5E-06 49.3 2.4 52 18-73 81-135 (140)
83 smart00504 Ubox Modified RING 85.4 0.99 2.1E-05 38.8 3.6 43 19-69 3-45 (63)
84 PLN03208 E3 ubiquitin-protein 79.2 2.7 5.8E-05 45.3 4.7 64 1-71 1-80 (193)
85 PRK14559 putative protein seri 76.8 1.1 2.4E-05 56.1 1.2 32 39-71 18-53 (645)
86 PHA02929 N1R/p28-like protein; 76.5 3.1 6.7E-05 46.3 4.4 55 15-70 172-227 (238)
87 PHA02825 LAP/PHD finger-like p 75.9 2.7 5.8E-05 43.9 3.5 51 16-72 7-61 (162)
88 PHA02862 5L protein; Provision 74.8 1.9 4E-05 44.4 2.0 49 17-71 2-54 (156)
89 PF13639 zf-RING_2: Ring finge 74.4 2 4.3E-05 34.9 1.7 43 19-66 2-44 (44)
90 PF14447 Prok-RING_4: Prokaryo 69.9 1.9 4.2E-05 37.6 0.7 47 16-72 6-52 (55)
91 KOG2977 Glycosyltransferase [G 68.7 29 0.00064 39.8 9.7 50 350-400 68-120 (323)
92 smart00659 RPOLCX RNA polymera 67.0 3.3 7.1E-05 34.5 1.5 27 18-46 3-29 (44)
93 smart00184 RING Ring finger. E 66.7 5.2 0.00011 29.8 2.5 39 20-65 1-39 (39)
94 PF03604 DNA_RNApol_7kD: DNA d 66.2 4.2 9.1E-05 31.8 1.8 26 19-46 2-27 (32)
95 KOG0823 Predicted E3 ubiquitin 65.6 4.1 8.9E-05 44.8 2.3 44 18-69 48-94 (230)
96 PF13712 Glyco_tranf_2_5: Glyc 62.8 25 0.00054 38.3 7.7 45 532-580 40-85 (217)
97 KOG3800 Predicted E3 ubiquitin 62.8 5.6 0.00012 45.1 2.8 53 18-72 1-53 (300)
98 KOG2068 MOT2 transcription fac 62.8 5.8 0.00013 45.8 2.9 52 17-72 249-300 (327)
99 KOG2932 E3 ubiquitin ligase in 61.6 5 0.00011 45.8 2.1 45 30-74 84-138 (389)
100 PF13923 zf-C3HC4_2: Zinc fing 61.5 6.8 0.00015 31.1 2.3 39 20-65 1-39 (39)
101 PF03966 Trm112p: Trm112p-like 61.1 1.3 2.7E-05 39.8 -2.2 25 48-72 42-66 (68)
102 COG4858 Uncharacterized membra 60.8 44 0.00096 36.1 8.7 60 981-1040 99-161 (226)
103 KOG0006 E3 ubiquitin-protein l 60.1 7.1 0.00015 44.7 3.0 66 12-78 310-416 (446)
104 PF00097 zf-C3HC4: Zinc finger 58.6 6.7 0.00015 31.0 1.8 40 20-65 1-41 (41)
105 PRK00420 hypothetical protein; 56.7 4.6 9.9E-05 40.1 0.7 29 37-71 24-52 (112)
106 PRK15103 paraquat-inducible me 55.0 9.5 0.00021 45.7 3.1 30 34-72 219-248 (419)
107 PF13920 zf-C3HC4_3: Zinc fing 53.3 9.8 0.00021 31.8 2.0 46 18-71 3-49 (50)
108 PF02318 FYVE_2: FYVE-type zin 52.4 1.7 3.8E-05 42.9 -3.0 47 16-65 53-100 (118)
109 PHA02926 zinc finger-like prot 52.3 16 0.00035 40.3 4.0 62 14-75 167-235 (242)
110 smart00249 PHD PHD zinc finger 51.7 7.5 0.00016 30.7 1.1 43 19-65 1-47 (47)
111 PF14471 DUF4428: Domain of un 51.0 8.6 0.00019 33.0 1.4 28 19-52 1-28 (51)
112 PF07282 OrfB_Zn_ribbon: Putat 50.8 11 0.00023 33.5 2.0 33 16-49 27-59 (69)
113 smart00291 ZnF_ZZ Zinc-binding 50.6 12 0.00027 30.8 2.2 37 17-58 4-41 (44)
114 KOG3737 Predicted polypeptide 50.6 54 0.0012 39.1 8.0 48 344-394 150-197 (603)
115 TIGR00155 pqiA_fam integral me 48.7 11 0.00024 45.0 2.3 30 35-72 214-243 (403)
116 COG5114 Histone acetyltransfer 47.9 6.1 0.00013 45.2 0.0 36 19-58 7-43 (432)
117 PRK04023 DNA polymerase II lar 47.2 13 0.00029 48.4 2.7 45 15-70 624-674 (1121)
118 PRK12495 hypothetical protein; 47.0 10 0.00022 41.7 1.5 29 36-71 42-70 (226)
119 PRK00398 rpoP DNA-directed RNA 43.1 14 0.00031 30.6 1.5 27 19-46 5-31 (46)
120 KOG2068 MOT2 transcription fac 42.5 9.8 0.00021 44.0 0.6 31 43-73 1-33 (327)
121 PF11077 DUF2616: Protein of u 42.3 8.2 0.00018 41.0 -0.1 35 20-59 55-104 (173)
122 TIGR00599 rad18 DNA repair pro 41.7 21 0.00045 42.7 3.1 45 18-70 27-71 (397)
123 COG0551 TopA Zn-finger domain 41.6 15 0.00033 37.2 1.7 50 14-67 14-68 (140)
124 PRK07220 DNA topoisomerase I; 41.1 12 0.00027 47.9 1.2 48 18-67 590-643 (740)
125 KOG0457 Histone acetyltransfer 39.3 12 0.00027 44.5 0.8 50 18-74 15-65 (438)
126 cd02249 ZZ Zinc finger, ZZ typ 39.2 23 0.0005 29.4 2.2 30 19-53 2-32 (46)
127 cd02335 ZZ_ADA2 Zinc finger, Z 38.3 25 0.00055 29.7 2.3 30 19-52 2-32 (49)
128 PRK12438 hypothetical protein; 38.2 6.4E+02 0.014 34.0 15.5 46 1012-1057 259-304 (991)
129 PF06906 DUF1272: Protein of u 37.1 37 0.0008 30.0 3.1 48 18-71 6-53 (57)
130 cd00350 rubredoxin_like Rubred 37.0 9.7 0.00021 29.6 -0.4 18 53-70 11-28 (33)
131 PF14634 zf-RING_5: zinc-RING 36.5 34 0.00073 28.0 2.7 43 20-67 2-44 (44)
132 PRK12380 hydrogenase nickel in 36.4 9.4 0.0002 37.7 -0.7 26 36-68 70-95 (113)
133 TIGR02443 conserved hypothetic 36.2 21 0.00045 31.8 1.4 31 15-45 7-40 (59)
134 COG4818 Predicted membrane pro 36.0 2.1E+02 0.0046 28.1 8.1 26 928-953 5-30 (105)
135 PRK14503 mannosyl-3-phosphogly 35.9 83 0.0018 37.3 6.6 40 531-573 142-181 (393)
136 COG0068 HypF Hydrogenase matur 35.9 25 0.00055 44.5 2.7 61 14-74 98-190 (750)
137 PF07649 C1_3: C1-like domain; 35.6 20 0.00044 27.1 1.2 28 19-50 2-29 (30)
138 COG1996 RPC10 DNA-directed RNA 34.7 19 0.00041 31.0 1.0 29 17-46 6-34 (49)
139 KOG1941 Acetylcholine receptor 34.3 13 0.00029 43.7 0.0 62 17-81 365-432 (518)
140 PRK11827 hypothetical protein; 34.1 26 0.00057 31.3 1.8 37 45-81 12-48 (60)
141 PF11238 DUF3039: Protein of u 33.7 13 0.00029 32.8 -0.1 12 60-71 45-56 (58)
142 cd00730 rubredoxin Rubredoxin; 33.7 11 0.00023 32.4 -0.7 7 61-67 36-42 (50)
143 PF15050 SCIMP: SCIMP protein 33.3 38 0.00082 34.1 2.9 41 918-959 2-47 (133)
144 PF09484 Cas_TM1802: CRISPR-as 33.2 22 0.00048 44.3 1.7 40 15-54 196-251 (593)
145 COG4739 Uncharacterized protei 33.2 23 0.00051 36.8 1.5 46 26-71 77-122 (182)
146 PF03452 Anp1: Anp1; InterPro 32.5 4.9E+02 0.011 29.9 11.8 56 345-404 21-78 (269)
147 KOG3736 Polypeptide N-acetylga 32.5 59 0.0013 40.7 5.0 49 345-396 138-186 (578)
148 PF00628 PHD: PHD-finger; Int 32.0 31 0.00067 28.6 1.8 45 19-67 1-50 (51)
149 PF14319 Zn_Tnp_IS91: Transpos 30.9 31 0.00067 34.1 1.9 34 31-71 37-72 (111)
150 PRK07219 DNA topoisomerase I; 30.6 25 0.00054 45.7 1.6 53 17-72 688-746 (822)
151 cd02336 ZZ_RSC8 Zinc finger, Z 30.1 34 0.00074 28.8 1.7 36 19-59 2-38 (45)
152 PRK11595 DNA utilization prote 30.0 32 0.00068 37.7 2.0 39 17-68 5-43 (227)
153 PF03884 DUF329: Domain of unk 29.9 35 0.00076 30.2 1.9 27 56-82 15-47 (57)
154 PRK14973 DNA topoisomerase I; 29.8 31 0.00068 45.5 2.2 48 18-68 589-644 (936)
155 PF11781 RRN7: RNA polymerase 29.6 28 0.0006 28.0 1.1 27 16-44 5-33 (36)
156 KOG0311 Predicted E3 ubiquitin 29.4 15 0.00032 42.9 -0.6 45 19-69 45-89 (381)
157 TIGR02460 osmo_MPGsynth mannos 29.3 1.2E+02 0.0027 35.8 6.5 40 531-573 141-180 (381)
158 TIGR00143 hypF [NiFe] hydrogen 29.1 34 0.00074 43.9 2.3 58 14-72 65-153 (711)
159 TIGR00155 pqiA_fam integral me 28.5 36 0.00077 40.8 2.2 35 34-72 11-46 (403)
160 TIGR00595 priA primosomal prot 28.0 27 0.00058 42.9 1.1 51 30-80 206-261 (505)
161 KOG3507 DNA-directed RNA polym 27.9 31 0.00067 30.7 1.1 29 16-46 19-47 (62)
162 KOG0916 1,3-beta-glucan syntha 27.8 1.4E+03 0.031 32.1 16.1 71 775-854 1173-1247(1679)
163 PRK14873 primosome assembly pr 27.7 39 0.00084 43.0 2.5 11 59-69 422-432 (665)
164 COG4707 Uncharacterized protei 27.6 25 0.00054 34.1 0.6 44 453-507 20-70 (107)
165 TIGR01562 FdhE formate dehydro 27.6 47 0.001 38.4 2.9 44 16-68 183-233 (305)
166 COG4391 Uncharacterized protei 27.1 24 0.00052 31.7 0.4 17 55-71 44-60 (62)
167 PRK14890 putative Zn-ribbon RN 26.9 79 0.0017 28.3 3.5 50 16-67 6-56 (59)
168 PF13240 zinc_ribbon_2: zinc-r 26.7 16 0.00034 26.5 -0.7 13 56-68 10-22 (23)
169 COG4393 Predicted membrane pro 26.6 1.2E+03 0.025 27.9 14.8 24 1036-1059 196-219 (405)
170 PRK06319 DNA topoisomerase I/S 26.5 34 0.00074 44.8 1.7 57 15-74 590-660 (860)
171 PF07851 TMPIT: TMPIT-like pro 26.2 1.1E+03 0.023 28.1 13.3 19 909-927 172-190 (330)
172 KOG2857 Predicted MYND Zn-fing 26.0 34 0.00074 35.3 1.3 45 17-73 5-50 (157)
173 KOG2177 Predicted E3 ubiquitin 26.0 35 0.00076 36.5 1.5 43 16-66 12-54 (386)
174 PF08274 PhnA_Zn_Ribbon: PhnA 25.8 26 0.00056 27.2 0.3 25 18-44 3-27 (30)
175 PRK00564 hypA hydrogenase nick 25.6 21 0.00046 35.5 -0.2 28 37-71 72-100 (117)
176 PF13248 zf-ribbon_3: zinc-rib 25.6 17 0.00036 26.9 -0.7 14 55-68 12-25 (26)
177 cd00899 b4GalT Beta-4-Galactos 25.5 47 0.001 36.7 2.3 81 719-829 110-200 (219)
178 PRK03681 hypA hydrogenase nick 25.1 19 0.00042 35.6 -0.6 26 37-69 71-97 (114)
179 COG1615 Uncharacterized conser 24.7 1.6E+03 0.034 29.6 15.0 49 1010-1058 234-282 (885)
180 smart00744 RINGv The RING-vari 24.7 91 0.002 26.5 3.4 45 19-66 1-49 (49)
181 TIGR02921 PEP_integral PEP-CTE 24.5 1.6E+03 0.035 28.9 16.2 26 858-883 46-71 (952)
182 PF13719 zinc_ribbon_5: zinc-r 24.4 31 0.00068 27.5 0.6 11 61-71 4-14 (37)
183 PTZ00293 thymidine kinase; Pro 24.2 34 0.00074 37.6 1.0 35 18-52 138-177 (211)
184 TIGR01206 lysW lysine biosynth 23.9 50 0.0011 28.9 1.7 12 19-30 4-15 (54)
185 PF13717 zinc_ribbon_4: zinc-r 23.9 33 0.00071 27.4 0.6 11 61-71 4-14 (36)
186 KOG1609 Protein involved in mR 23.8 59 0.0013 36.5 2.8 58 17-75 78-139 (323)
187 PRK00068 hypothetical protein; 23.7 1.3E+03 0.028 31.2 14.8 45 1013-1057 260-304 (970)
188 TIGR02556 cas_TM1802 CRISPR-as 23.6 50 0.0011 41.2 2.3 41 17-58 170-222 (555)
189 TIGR00100 hypA hydrogenase nic 23.0 26 0.00057 34.7 -0.2 28 37-71 71-98 (115)
190 cd03031 GRX_GRX_like Glutaredo 22.9 33 0.00072 35.5 0.6 43 16-67 98-141 (147)
191 cd02340 ZZ_NBR1_like Zinc fing 22.9 65 0.0014 26.7 2.1 29 19-52 2-31 (43)
192 PF09526 DUF2387: Probable met 22.8 48 0.001 30.5 1.5 31 15-45 6-39 (71)
193 KOG3103 Rab GTPase interacting 22.8 3.2E+02 0.0069 30.8 7.9 78 940-1042 156-233 (249)
194 PRK08359 transcription factor; 22.6 29 0.00062 37.2 0.0 30 18-55 7-42 (176)
195 KOG2824 Glutaredoxin-related p 22.5 49 0.0011 37.7 1.8 22 14-43 226-247 (281)
196 PF07754 DUF1610: Domain of un 22.3 70 0.0015 23.8 1.9 24 20-44 1-24 (24)
197 PRK15103 paraquat-inducible me 22.2 39 0.00085 40.7 1.0 33 37-72 11-43 (419)
198 PF13896 Glyco_transf_49: Glyc 22.1 96 0.0021 35.9 4.1 39 549-588 126-164 (317)
199 PRK14714 DNA polymerase II lar 22.0 41 0.00089 45.2 1.2 48 18-72 668-722 (1337)
200 PF06570 DUF1129: Protein of u 21.8 5.1E+02 0.011 28.0 9.4 25 978-1002 81-105 (206)
201 PF12773 DZR: Double zinc ribb 21.5 60 0.0013 27.0 1.7 12 17-28 12-23 (50)
202 PF00643 zf-B_box: B-box zinc 20.9 57 0.0012 26.0 1.4 31 17-54 3-33 (42)
203 PF03107 C1_2: C1 domain; Int 20.9 59 0.0013 24.7 1.4 28 19-50 2-29 (30)
204 PF04641 Rtf2: Rtf2 RING-finge 20.7 72 0.0016 35.8 2.6 49 17-71 113-162 (260)
205 PF04564 U-box: U-box domain; 20.6 78 0.0017 28.7 2.4 44 19-69 6-49 (73)
206 PRK06393 rpoE DNA-directed RNA 20.5 45 0.00098 30.2 0.8 23 35-68 4-26 (64)
207 COG1198 PriA Primosomal protei 20.3 45 0.00098 42.8 1.1 44 20-75 438-491 (730)
208 PRK05580 primosome assembly pr 20.2 43 0.00092 42.7 0.8 44 19-74 383-436 (679)
209 COG0551 TopA Zn-finger domain 20.2 35 0.00075 34.6 0.0 52 15-70 58-112 (140)
210 PRK03824 hypA hydrogenase nick 20.1 35 0.00075 34.8 0.0 12 57-68 105-116 (135)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=2.1e-317 Score=2811.73 Aligned_cols=1077 Identities=92% Similarity=1.494 Sum_probs=1000.6
Q ss_pred CCCCCCCCCccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccC
Q 001421 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (1079)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~g 80 (1079)
||++|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCcccCCccccCCCCCCCcccc
Q 001421 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (1079)
Q Consensus 81 d~e~e~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1079)
|||||||+||+||||++..+++.+.++++|+|+||+|+||++.|.++..++++.+.+++|+|||||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999998654555668889999999999999998888788877555688999999988999997776766
Q ss_pred ccCCCCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCC
Q 001421 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (1079)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (1079)
.+++|.+ .||||||+|+.+.+.+.|.|||+||+++|||||++||||||+||+||+||+.++.++...++++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 6666654 689999999766678899999999999999999999999999999999887766665444565544 33221
Q ss_pred CCCccCccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 001421 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (1079)
Q Consensus 240 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 319 (1079)
++.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhh
Q 001421 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 320 ~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 399 (1079)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCccccc
Q 001421 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (1079)
Q Consensus 400 ~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~ 479 (1079)
|||.|||+|||+||||||||+|||||||+||++|.|++|++++|+|++|||+|||||||||+|||+|+++++++|+++|.
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecC
Q 001421 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
Q Consensus 480 m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDc 559 (1079)
|+||++|||+++||||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001421 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 560 Dh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
|||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCC-cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHH
Q 001421 640 GYEPPLKPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
Q Consensus 640 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
|++||...+..... +++|||++ +++.++.+.+...+++..++.+.+.+++++++++++.++...+++++.++++..++
T Consensus 640 G~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPG-FLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCcccccccccc-cccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99998754322222 22345555 33322222111112222334455667888899888888766777888899999999
Q ss_pred HhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecC
Q 001421 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
Q Consensus 719 ~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p 798 (1079)
++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++|++|
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P 798 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 001421 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLT 878 (1079)
Q Consensus 799 ~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~ 878 (1079)
++++|.|++|+|+.+++.||+|||+|++||++++++|+++|++++|+++|||+|+++++||++++++++|+++|++||++
T Consensus 799 ~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~ 878 (1079)
T PLN02638 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLT 878 (1079)
T ss_pred CchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999999987778999999999999999999999999999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCC
Q 001421 879 NKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
Q Consensus 879 G~~iip~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpK 958 (1079)
|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|+++++++||++++++|+|++++++|.||+|
T Consensus 879 G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK 958 (1079)
T PLN02638 879 GKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
T ss_pred CCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccc
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 001421 959 ASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
Q Consensus 959 g~~~d~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~r~ 1038 (1079)
..+.++.++++|+|+|+++++|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+
T Consensus 959 ~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~ 1038 (1079)
T PLN02638 959 ASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
T ss_pred cccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 98766678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhheeecCCCCCCCCCCccccCCCC
Q 001421 1039 PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1039 p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
||||++||++||++||||||+|+||+++++||.+++|||+|
T Consensus 1039 P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1039 PTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred CeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=7.1e-316 Score=2799.37 Aligned_cols=1056 Identities=74% Similarity=1.288 Sum_probs=978.6
Q ss_pred CCCCCCCccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCC
Q 001421 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (1079)
Q Consensus 3 ~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ 82 (1079)
..+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 22 ~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD- 100 (1085)
T PLN02400 22 HDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD- 100 (1085)
T ss_pred ccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-
Confidence 3466888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCC-CCCCCcccCCCCCCcccCCccccCCCCCCCccccc
Q 001421 83 EEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLS 161 (1079)
Q Consensus 83 e~e~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1079)
|||||+||+||||+|..+++.+.++++ |++.|.+ +++|++ +++|+|||||.++||+++++++|+.
T Consensus 101 eeedd~DDlenEf~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~ 166 (1085)
T PLN02400 101 EDEDDVDDLENEFNYAQGNGKARHQWQ----------GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQS 166 (1085)
T ss_pred cccccchhhhhhhcccccccccccccc----------ccCccccCcccccC----CCCccccCCcccCCCCCCCCCcccc
Confidence 788999999999999643333323321 5665555 456663 4789999999999999988888877
Q ss_pred cCCCCC---CCCccc---cccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCC
Q 001421 162 MASPGV---GPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGD 235 (1079)
Q Consensus 162 ~~~~~~---~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1079)
++|+.. +.|||| ||+|+.+ ..++|.+||+||+++||||||+||||||+||+||+|++.++.++. +|++|++
T Consensus 167 ~~~~~~~~~~~~~~vh~~p~~d~~~-~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~ 243 (1085)
T PLN02400 167 VRTTSGPLGPAERNANSSPYIDPRQ-PVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGD 243 (1085)
T ss_pred ccCCcccccccCCcccccCccCccc-CCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccC
Confidence 777643 456899 5998533 366789999999999999999999999999999998776666533 3555555
Q ss_pred CCCCCCCccCccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 001421 236 IDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISW 315 (1079)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~w 315 (1079)
.+| ++++++|+++||+.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|
T Consensus 244 ~~~-~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~W 322 (1085)
T PLN02400 244 MEG-TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSW 322 (1085)
T ss_pred CCC-CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHH
Confidence 443 2334678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCc
Q 001421 316 IFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAA 395 (1079)
Q Consensus 316 iL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~ 395 (1079)
+|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||++
T Consensus 323 ll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS 402 (1085)
T PLN02400 323 LLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSA 402 (1085)
T ss_pred HHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCch
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCc
Q 001421 396 MLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPE 475 (1079)
Q Consensus 396 ~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~ 475 (1079)
+||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+
T Consensus 403 ~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~ 482 (1085)
T PLN02400 403 MLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPE 482 (1085)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEE
Q 001421 476 EGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLL 555 (1079)
Q Consensus 476 e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il 555 (1079)
++|.|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||
T Consensus 483 ~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~IL 562 (1085)
T PLN02400 483 EGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLL 562 (1085)
T ss_pred cccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhh
Q 001421 556 NLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNR 635 (1079)
Q Consensus 556 ~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR 635 (1079)
|||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||
T Consensus 563 NlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR 642 (1085)
T PLN02400 563 NVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNR 642 (1085)
T ss_pred ecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHH
Q 001421 636 TALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQM 715 (1079)
Q Consensus 636 ~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1079)
+||||++||..++.....+.|+|||++|++.+..+.+..++++..+..+++.++++++++++++++ +++|++.+++++
T Consensus 643 ~aLYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 720 (1085)
T PLN02400 643 QALYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEG--YDDERSLLMSQK 720 (1085)
T ss_pred eeeccCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccchhhhhhhhh
Confidence 999999998765432222222345566665443332222333344556677899999999999988 778888899999
Q ss_pred HHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEE
Q 001421 716 SLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIY 795 (1079)
Q Consensus 716 ~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY 795 (1079)
.++++||+|.+|++|++++.||.+...+++++++||+||+||+||++|+||+||||+|+|+|||+.||++||++|||++|
T Consensus 721 ~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY 800 (1085)
T PLN02400 721 SLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIY 800 (1085)
T ss_pred hhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEe
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001421 796 CMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVC 875 (1079)
Q Consensus 796 ~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~ 875 (1079)
++|++++|.|++|+|+.+++.||+|||+|++||+++++||+++|+.++|+++|||+|+++++||++++++++|+++|++|
T Consensus 801 ~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~ 880 (1085)
T PLN02400 801 CMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAFC 880 (1085)
T ss_pred cCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888889999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHhCCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeee
Q 001421 876 LLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTV 955 (1079)
Q Consensus 876 Ll~G~~iip~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~V 955 (1079)
|++|+++||.++++++++|+++|++++++++||++|+|+++++||||||||+|+++|+++||++++++|+|++++++|.|
T Consensus 881 LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~V 960 (1085)
T PLN02400 881 LITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTV 960 (1085)
T ss_pred HHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCccccee
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001421 956 TSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQ 1035 (1079)
Q Consensus 956 TpKg~~~d~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~ 1035 (1079)
|+|..+.++.++++|+|+|+++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||+
T Consensus 961 TsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~ 1040 (1085)
T PLN02400 961 TSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQ 1040 (1085)
T ss_pred cCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99998755567899999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCC-CccccCCCC
Q 001421 1036 NRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGP-DVEQCGINC 1079 (1079)
Q Consensus 1036 ~r~p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~-~~~~~~~~~ 1079 (1079)
+|+|+||++||++||++||||||+|+||+++++|| ++++|||||
T Consensus 1041 ~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1041 NRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred CCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 99999999999999999999999999999999999 899999999
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=2.1e-312 Score=2758.40 Aligned_cols=1059 Identities=68% Similarity=1.235 Sum_probs=979.2
Q ss_pred CCCCCCccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCC
Q 001421 4 EGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDRE 83 (1079)
Q Consensus 4 ~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e 83 (1079)
.+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |
T Consensus 23 d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~ 101 (1094)
T PLN02436 23 DEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-E 101 (1094)
T ss_pred ccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-c
Confidence 355778999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCc--cc--CCCCCCcccCCccccCCCCCCCccc
Q 001421 84 EDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDN--EV--SHNHIPRLTGGQEVSGELSAASPEH 159 (1079)
Q Consensus 84 ~e~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1079)
||||+||+|||||+. .++.+.++++|+|+||+|++|++.+.+...++. +. +.+++|++++|| +++|++ +++|
T Consensus 102 ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~ 177 (1094)
T PLN02436 102 EEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRH 177 (1094)
T ss_pred ccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Cccc
Confidence 788899999999987 355556888999999999999998876443322 12 134789999998 578887 3556
Q ss_pred cccCCCCCCCCccc-c--ccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCC
Q 001421 160 LSMASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDI 236 (1079)
Q Consensus 160 ~~~~~~~~~~~~~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1079)
+.++|+.++.|||| | |+|. ..+.++|.+||+||+++||||||+||||||+||+||++|++++.+ . ++++++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~-~--~~~~~~~~ 253 (1094)
T PLN02436 178 ALIVPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKH-E--GGNDGGNN 253 (1094)
T ss_pred ccccCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccccccc-c--cccccCCC
Confidence 76678776678999 4 8773 223778999999999999999999999999999999855544443 2 45555555
Q ss_pred CCCCCCccCccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 001421 237 DASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWI 316 (1079)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wi 316 (1079)
+| ++.+++|.+++|++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+
T Consensus 254 ~~-~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wl 332 (1094)
T PLN02436 254 DG-DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWI 332 (1094)
T ss_pred CC-CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHH
Confidence 43 23346788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001421 317 FDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 317 L~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++
T Consensus 333 l~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~ 412 (1094)
T PLN02436 333 LDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 412 (1094)
T ss_pred HccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcc
Q 001421 397 LTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEE 476 (1079)
Q Consensus 397 ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e 476 (1079)
||||||.|||+|||+||||||||+|||||||+||++|.|++|++++|+|++|||+|||||||||+|||+|+++++++|++
T Consensus 413 LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~ 492 (1094)
T PLN02436 413 LTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPED 492 (1094)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred cccccCCCCCCCCCCCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEE
Q 001421 477 GWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLN 556 (1079)
Q Consensus 477 ~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~ 556 (1079)
+|.|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||
T Consensus 493 ~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILN 572 (1094)
T PLN02436 493 GWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLN 572 (1094)
T ss_pred hhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEe
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhh
Q 001421 557 LDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRT 636 (1079)
Q Consensus 557 lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ 636 (1079)
||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+
T Consensus 573 LDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~ 652 (1094)
T PLN02436 573 VDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQ 652 (1094)
T ss_pred cccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCC-c----ccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHh
Q 001421 637 ALYGYEPPLKPKHRKPGL-L----SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLL 711 (1079)
Q Consensus 637 ALyg~~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1079)
||||++||...+.+...+ | |+|||+.|+++++.+++..+ ..++.+...+++++.++++++++ +++|++.+
T Consensus 653 aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 727 (1094)
T PLN02436 653 ALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK---KKKNREASKQIHALENIEEGIEG--SNNEKSSE 727 (1094)
T ss_pred eeeccCCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc--ccchhhhh
Confidence 999999997655433222 1 24556766654332222111 12334455678889999999887 77788889
Q ss_pred hhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCC
Q 001421 712 MSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGW 791 (1079)
Q Consensus 712 ~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGW 791 (1079)
++++.++++||+|++|++|+++++||.+.+.+++++++||+||+||+||++|+||+||||+|+|+|||+.||++||++||
T Consensus 728 ~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGW 807 (1094)
T PLN02436 728 TPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGW 807 (1094)
T ss_pred hhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 001421 792 RSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTL 871 (1079)
Q Consensus 792 rsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylll 871 (1079)
|++|++|.+++|.|++|+|+.+++.||+|||+|++||++++++|+|+|+.++|+|+|||+|+++++||++++++++|+++
T Consensus 808 rSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~Slp~liY~~l 887 (1094)
T PLN02436 808 RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTL 887 (1094)
T ss_pred ceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999998877899999999999999999999999999999
Q ss_pred HHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001421 872 PAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDT 951 (1079)
Q Consensus 872 Pil~Ll~G~~iip~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~ 951 (1079)
|++||++|++++|.++.+++++|+++|++++++++|+++|+|+++++||||||||+|+++++++||++++++|+|+++++
T Consensus 888 P~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~ 967 (1094)
T PLN02436 888 PAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNT 967 (1094)
T ss_pred HHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeCCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 001421 952 NFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1031 (1079)
Q Consensus 952 ~F~VTpKg~~~d~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL 1031 (1079)
+|+||+|..+ ++.++++|+|+|+++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++||
T Consensus 968 ~F~VTsK~~d-~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL 1046 (1094)
T PLN02436 968 NFTVTSKAAD-DGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGL 1046 (1094)
T ss_pred cceecccccc-cccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 346789999999999999999999999999999999999899999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCccccCCCC
Q 001421 1032 MGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1032 ~gR~~r~p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
|||++|+||||++||++||++||||||+|+||+++ +||++++|||||
T Consensus 1047 ~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1047 LGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred hccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 99999999999999999999999999999999999 999999999999
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=5.4e-299 Score=2646.15 Aligned_cols=1015 Identities=70% Similarity=1.248 Sum_probs=927.3
Q ss_pred CCCCCCCCCccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccC
Q 001421 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (1079)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~g 80 (1079)
|.++.+.+++ +..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~~--~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~ 78 (1044)
T PLN02915 1 MDDEDRPPTR--QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEG 78 (1044)
T ss_pred CCcccCCccc--cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccC
Confidence 4455444443 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCcccCCccccCCCCCCCcccc
Q 001421 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (1079)
Q Consensus 81 d~e~e~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1079)
||||||++||+|||||+..+++. +.|+|++|++|++.|.+++.+ .+++|++++ ++|++
T Consensus 79 d~~~~~~~dd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------- 136 (1044)
T PLN02915 79 DDEEGNDMDDFEDEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------- 136 (1044)
T ss_pred Cccccccchhhhhhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------
Confidence 98889999999999998542211 228899999999877442221 134666665 23332
Q ss_pred ccCCCCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCC
Q 001421 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240 (1079)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1079)
-+.+||+|| |||||+||||||+||+||+ |++.+.+. . + +.+ +
T Consensus 137 ------------------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~-~----~--~~~--~ 178 (1044)
T PLN02915 137 ------------------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKD-D----S--DDG--D 178 (1044)
T ss_pred ------------------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccc-c----c--CCC--C
Confidence 025899997 8999999999999999997 44444331 1 1 111 1
Q ss_pred CCccCccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 001421 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQF 320 (1079)
Q Consensus 241 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~ 320 (1079)
..+++|.++|++.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|+
T Consensus 179 ~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~ 258 (1044)
T PLN02915 179 DKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQF 258 (1044)
T ss_pred CCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccC
Confidence 22357889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhH
Q 001421 321 PKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (1079)
Q Consensus 321 ~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~ 400 (1079)
+||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||
T Consensus 259 ~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~ 338 (1044)
T PLN02915 259 PKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFD 338 (1044)
T ss_pred ccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccc
Q 001421 401 ALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480 (1079)
Q Consensus 401 al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m 480 (1079)
||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|
T Consensus 339 AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m 418 (1044)
T PLN02915 339 TLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVM 418 (1044)
T ss_pred HHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCC
Q 001421 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCD 560 (1079)
Q Consensus 481 ~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcD 560 (1079)
+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||
T Consensus 419 ~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCD 498 (1044)
T PLN02915 419 QDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCD 498 (1044)
T ss_pred cCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcC
Q 001421 561 HYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (1079)
Q Consensus 561 h~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg 640 (1079)
||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+||||
T Consensus 499 mY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG 578 (1044)
T PLN02915 499 HYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYG 578 (1044)
T ss_pred cccCcchhhHhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC-----cccccCCCcccCCCcCcc-CC--------C-ccc------------CCCCCCCCCccccch
Q 001421 641 YEPPLKPKHRKPGL-----LSSLFGGSRKKNSKSSKK-GS--------D-KKK------------SSKHVDPTVPIFSLE 693 (1079)
Q Consensus 641 ~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~--------~-~~~------------~~~~~~~~~~~~~~~ 693 (1079)
++||..++.++.++ .|+|||+.++++++..++ .. . +++ .....+++.++|+++
T Consensus 579 ~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1044)
T PLN02915 579 YDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLE 658 (1044)
T ss_pred cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99997665554433 224566666554332111 00 0 000 001233566788999
Q ss_pred hhhhcccCCCCch-hhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcc
Q 001421 694 DIEEGVEGAGFDD-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWI 772 (1079)
Q Consensus 694 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~ 772 (1079)
+++++++| +++ |++.+++++.++++||+|.+|++|++++.+|.+..++++++++||+||+||+||++|+||+||||.
T Consensus 659 ~~~~~~~~--~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~ 736 (1044)
T PLN02915 659 EIEEGLEG--YDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWI 736 (1044)
T ss_pred cccccccc--ccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCcc
Confidence 99999988 444 777889999999999999999999999999999988999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhh
Q 001421 773 YGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAY 852 (1079)
Q Consensus 773 ~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Y 852 (1079)
|+|+|||+.||++||++|||++|++|++++|.|++|+|+.++++||+|||+|++||++++++|+++++.++|+++||++|
T Consensus 737 YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Y 816 (1044)
T PLN02915 737 YGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAY 816 (1044)
T ss_pred ccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999876789999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhH
Q 001421 853 VNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVS 932 (1079)
Q Consensus 853 l~~~ly~l~slp~liylllPil~Ll~G~~iip~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vs 932 (1079)
+++++||++++++++|+++|++||++|++++|.++..++++|+++|++++++++++++|+|+++++||||||||+|++++
T Consensus 817 l~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tS 896 (1044)
T PLN02915 817 INTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVS 896 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999888777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCeeeCCCCCCCC-CCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 001421 933 SHLFAVFQGLLKVLAGIDTNFTVTSKASDED-GDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLF 1011 (1079)
Q Consensus 933 a~LfAvl~aLLk~L~g~~~~F~VTpKg~~~d-~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~ 1011 (1079)
+|+||++++++++|++++++|+||+|..+.+ +.++++|+|+|+++++|+++++++|++|+++|++++++++++.||+++
T Consensus 897 a~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~ 976 (1044)
T PLN02915 897 AHLFAVFQGLLKVLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLF 976 (1044)
T ss_pred HHHHHHHHHHHHHhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 9999999999999999999999999997542 346899999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCccccCCCC
Q 001421 1012 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1012 g~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
+++|+++|+++|+|||++|||||++|+||||++||++||++||||||+|+||+++++||++++|||+|
T Consensus 977 ~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 977 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.5e-294 Score=2606.82 Aligned_cols=1010 Identities=73% Similarity=1.272 Sum_probs=933.1
Q ss_pred CCCCccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcC
Q 001421 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (1079)
Q Consensus 6 ~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e 85 (1079)
++++||+++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 23 ~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee 101 (1040)
T PLN02189 23 HEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDE 101 (1040)
T ss_pred ccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred CCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCcccCCcc--ccCCCCCCCc--cccc
Q 001421 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQE--VSGELSAASP--EHLS 161 (1079)
Q Consensus 86 ~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~ 161 (1079)
||+||+||||++.. ++.+.++++|+|+|++|++|++.+...+ .+++|++++||. +++|++..|+ +|+.
T Consensus 102 ~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1040)
T PLN02189 102 EDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDEN-------NQFPPVITGVRSRPVSGEFPIGSGYGHGEQ 173 (1040)
T ss_pred ccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCCC-------cCCCcccccCccccccCCcCcccccccccc
Confidence 88999999999865 4455678899999999999998764422 245789999873 7888874322 3444
Q ss_pred cCCCCCCCCccc-c--ccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCC
Q 001421 162 MASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (1079)
Q Consensus 162 ~~~~~~~~~~~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1079)
++++. .|||| | |+| .+.|.|||+||++ ||||||+||+||++ . ++ +
T Consensus 174 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~------~-------~~---~- 221 (1040)
T PLN02189 174 MLSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN------L-------GP---D- 221 (1040)
T ss_pred ccCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc------C-------CC---C-
Confidence 55665 48999 4 876 4567999999975 99999999999951 0 11 1
Q ss_pred CCCCccCccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 001421 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (1079)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~ 318 (1079)
++++++|.++++++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+
T Consensus 222 -~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~ 300 (1040)
T PLN02189 222 -PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILD 300 (1040)
T ss_pred -CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHc
Confidence 2233567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 001421 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (1079)
Q Consensus 319 q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt 398 (1079)
|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||
T Consensus 301 q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 380 (1040)
T PLN02189 301 QFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT 380 (1040)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccc
Q 001421 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (1079)
Q Consensus 399 f~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w 478 (1079)
||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+++++++++|+++|
T Consensus 381 f~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~ 460 (1040)
T PLN02189 381 FEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGW 460 (1040)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEec
Q 001421 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLD 558 (1079)
Q Consensus 479 ~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lD 558 (1079)
.|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||
T Consensus 461 ~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLD 540 (1040)
T PLN02189 461 IMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLD 540 (1040)
T ss_pred eeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhh
Q 001421 559 CDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (1079)
Q Consensus 559 cDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 638 (1079)
||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||
T Consensus 541 CDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~AL 620 (1040)
T PLN02189 541 CDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQAL 620 (1040)
T ss_pred CccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHH
Q 001421 639 YGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
Q Consensus 639 yg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
||++||.....+..++|++|||..+++.++.+... +.. .+++++ .+++++.++++++++
T Consensus 621 yG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~--~~~~~~~~~~~~~~~ 679 (1040)
T PLN02189 621 YGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKNGL-------NGE------------VAALGG--MESDKEMLMSQMNFE 679 (1040)
T ss_pred eccCcccccccccccccchhhhccccccccccccc-------ccc------------cccccc--cchhhhhhhhhhhhH
Confidence 99999866555555555555655444322211100 000 011112 344556678889999
Q ss_pred HhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecC
Q 001421 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
Q Consensus 719 ~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p 798 (1079)
++||+|.+|++|++.+.+|.+..++++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++|++|
T Consensus 680 ~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p 759 (1040)
T PLN02189 680 KKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMP 759 (1040)
T ss_pred hhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCC
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhccchhHhhhcccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001421 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLL 877 (1079)
Q Consensus 799 ~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~-~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll 877 (1079)
++++|.|+||+|+.+++.||+||++|++||+++++||+++|+. ++|+++|||+|+++++||++++|+++|+++|++||+
T Consensus 760 ~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll 839 (1040)
T PLN02189 760 KRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLL 839 (1040)
T ss_pred CcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999998763 679999999999999999999999999999999999
Q ss_pred hCCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCC
Q 001421 878 TNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTS 957 (1079)
Q Consensus 878 ~G~~iip~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTp 957 (1079)
+|+++||.++.+++++|+++|++++++.+++++|+|+++++||||||||+|+++++++||++++++|+|++++++|.||+
T Consensus 840 ~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTs 919 (1040)
T PLN02189 840 TGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTS 919 (1040)
T ss_pred cCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 001421 958 KASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 1037 (1079)
Q Consensus 958 Kg~~~d~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~r 1037 (1079)
|..+ ++.++++|+|+|+++++|+++++++|++|+++|+++++.+++++|+++++++|+++|+++|+|||++|||||++|
T Consensus 920 K~~~-d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r 998 (1040)
T PLN02189 920 KATD-DDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 998 (1040)
T ss_pred cccc-ccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9887 456789999999999999999999999999999999999889899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCccccCCCC
Q 001421 1038 TPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1038 ~p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
+||||++||++|++|||||||+|+||+++++||.+++|||+|
T Consensus 999 ~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 999 TPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred CCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=1.7e-282 Score=2492.28 Aligned_cols=971 Identities=68% Similarity=1.220 Sum_probs=881.9
Q ss_pred ccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcCCCCCCccc
Q 001421 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGAS 93 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e~~~dd~e~ 93 (1079)
++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||||+||+||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~~ 69 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVET 69 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhhh
Confidence 567899999999999999999999999999999999999999999999999999997 3667899999
Q ss_pred ccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcccCCCCCCcccCCccccCCCCCCCccccccCCCCCCCCccc
Q 001421 94 DFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRI 173 (1079)
Q Consensus 94 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 173 (1079)
||+-+ .++++ ++|++|++.+ .+.+++|++++ +++|+
T Consensus 70 ~~~~~------~~~~~-----~~~~~~~~~~---------~~~~~~~~~~~---~~~~~--------------------- 105 (977)
T PLN02195 70 KHSRN------QSTMA-----SHLNDTQDVG---------IHARHISSVST---VDSEL--------------------- 105 (977)
T ss_pred hhccc------hhhhh-----hhcccCcCCC---------CCCcccccccc---CCCcc---------------------
Confidence 99421 22322 6778777632 11123455543 11111
Q ss_pred cccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCccCcccccccc
Q 001421 174 HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEA 253 (1079)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1079)
+. +|||++||||||+||.||+||+.++.++.. .| | +.+ ++.+++|+++ ||.
T Consensus 106 ----------------~~------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~--~-~~~--~~~~~~~~~~-~~~ 156 (977)
T PLN02195 106 ----------------ND------EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HK--A-QIP--PEQQMEEKPS-ADA 156 (977)
T ss_pred ----------------cC------ccCCHHHHHHHHHHHHhhhhhccccccccc-cc--c-CCC--CccCCccccc-ccc
Confidence 11 399999999999999999877765554322 22 2 222 2334567776 999
Q ss_pred CCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhh
Q 001421 254 RQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLD 333 (1079)
Q Consensus 254 ~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~d 333 (1079)
++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|
T Consensus 157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 236 (977)
T PLN02195 157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID 236 (977)
T ss_pred cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhh
Q 001421 334 RLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWV 413 (1079)
Q Consensus 334 rL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~Wv 413 (1079)
||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+||
T Consensus 237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 316 (977)
T PLN02195 237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV 316 (977)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCC
Q 001421 414 PFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRD 493 (1079)
Q Consensus 414 pfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rd 493 (1079)
||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++||
T Consensus 317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~d 396 (977)
T PLN02195 317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRD 396 (977)
T ss_pred ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001421 494 HPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 494 hp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
||+||||+|+++|+.|.+|++||+||||||||||||+||+||||||+++|+||++||||||||||||||+|||++||+||
T Consensus 397 Hp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AM 476 (977)
T PLN02195 397 HPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM 476 (977)
T ss_pred CcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCC
Q 001421 574 CFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPG 653 (1079)
Q Consensus 574 ~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~ 653 (1079)
|||+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++||..++.++.+
T Consensus 477 Cf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~ 556 (977)
T PLN02195 477 CFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSS 556 (977)
T ss_pred hhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766555554
Q ss_pred C-cccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHh
Q 001421 654 L-LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTL 732 (1079)
Q Consensus 654 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal 732 (1079)
+ |++|||+.+++....+ +. ..+..++.+.+.+++.++++++ ..++|++.+++++.++++||+|.+|++|++
T Consensus 557 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~ 628 (977)
T PLN02195 557 SSSSSCCCPTKKKPEQDP-SE--IYRDAKREDLNAAIFNLREIDN-----YDEYERSMLISQMSFEKTFGLSSVFIESTL 628 (977)
T ss_pred cccccccccccccccccc-hh--hccccccccccccccccccccc-----cchhhhhhhhhhhHHHHhhcccHHHHHHHH
Confidence 4 3345555444322111 11 0111222233334444444332 123466778899999999999999999999
Q ss_pred hhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHH
Q 001421 733 MENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLS 812 (1079)
Q Consensus 733 ~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~ 812 (1079)
++.+|.+...+++++++||+||+||+||++|+||+||||.|+|+|||+.||++||++|||++|++|.+++|.|++|+|+.
T Consensus 629 ~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~ 708 (977)
T PLN02195 629 MENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLS 708 (977)
T ss_pred HHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHhccchhHhhhcccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHH
Q 001421 813 DRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLAS 891 (1079)
Q Consensus 813 a~lkQR~RWA~G~lQIl~~r~~PL~~g~~-~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip~~s~~~l 891 (1079)
+++.||+|||+|++||+++++||+++|+. ++|+++|||+|+++++||++++++++|+++|++||++|+++||.++.+++
T Consensus 709 ~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~ 788 (977)
T PLN02195 709 DRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLAS 788 (977)
T ss_pred HHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHH
Confidence 99999999999999999999999998764 78999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCCCCCCccceee
Q 001421 892 IVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYM 971 (1079)
Q Consensus 892 ~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~~d~~~~~ly~ 971 (1079)
++|+++|++++++++++++|+|+++++||||||||+|+++|+||||++++++|+|++++++|+||+|..+ +++++++|+
T Consensus 789 ~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~d-d~~~~~~Y~ 867 (977)
T PLN02195 789 MLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAAD-DTEFGELYM 867 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceecccccc-ccchhccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 557899999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 001421 972 FKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLAS 1051 (1079)
Q Consensus 972 f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~s~~la~ 1051 (1079)
|+|+++++|+++++++|++|+++|+++++++++++||++++++|+++|+++|+|||++|||||++|+||||++||++||+
T Consensus 868 f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~ 947 (977)
T PLN02195 868 VKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLAS 947 (977)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheeecCCCCCCCCCC-cccc-CCCC
Q 001421 1052 IFSLLWVRVDPFTTRVTGPD-VEQC-GINC 1079 (1079)
Q Consensus 1052 ~~~~lwv~i~~~~~~~~~~~-~~~~-~~~~ 1079 (1079)
+||||||+|+||+++++||+ +++| |++|
T Consensus 948 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 948 VFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 99999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.5e-243 Score=2166.69 Aligned_cols=929 Identities=52% Similarity=0.963 Sum_probs=803.9
Q ss_pred CCccccccCCCcccc--cCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcC
Q 001421 8 GVKSIKNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (1079)
Q Consensus 8 ~~~~~~~~~~~~Cqi--Cgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e 85 (1079)
..+.+++.++..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.++| +.||+||++||.+ | ++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~ 182 (1135)
T PLN02248 115 SHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LD 182 (1135)
T ss_pred CCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--cc
Confidence 345678889999998 99999999999999999 999999999999999996 7999999999775 3 22
Q ss_pred CCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcccCC-CCCCcccCCccccCCCCCCCccccccCC
Q 001421 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSH-NHIPRLTGGQEVSGELSAASPEHLSMAS 164 (1079)
Q Consensus 86 ~~~dd~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1079)
|+.+|.+++ ... ++.. + .++.+...+. .+.+++..+| +|||+ |+
T Consensus 183 ~~~~~~~~~----------~~~----~~~~----~------~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~---- 227 (1135)
T PLN02248 183 DEVPDESSG----------ALP----LPPP----G------GSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN---- 227 (1135)
T ss_pred ccccccccc----------ccc----CCCC----C------CcccccccccccccchhccCC--CCCCC-----Cc----
Confidence 222222111 111 1100 0 0011110000 0123455556 67877 55
Q ss_pred CCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCcc
Q 001421 165 PGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLV 244 (1079)
Q Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1079)
||++++| ++|||||+.|++... . |++.+ + .+
T Consensus 228 ---------------------~w~~~~~--~~~~~~~~~~~~~~~-------------~---------~~~~~---~-~~ 258 (1135)
T PLN02248 228 ---------------------RWLFETK--GTYGYGNAVWPKDDG-------------Y---------GDDGG---G-GG 258 (1135)
T ss_pred ---------------------eeeeecc--cccccccccCccccc-------------c---------CCCCC---c-cc
Confidence 7999999 999999999998642 1 11101 0 11
Q ss_pred CccccccccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001421 245 DDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWL 324 (1079)
Q Consensus 245 ~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~ 324 (1079)
...+||++|+||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+
T Consensus 259 -~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~ 337 (1135)
T PLN02248 259 -PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLC 337 (1135)
T ss_pred -cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1146899999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ccccchhhhHHhhhhccCC-----CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhh
Q 001421 325 PVNRETYLDRLSLRYEREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 325 Pi~R~~~~drL~~r~~~~~-----~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 399 (1079)
||+|.||+|||++|||.|+ ++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 338 Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf 417 (1135)
T PLN02248 338 PINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTF 417 (1135)
T ss_pred ccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHH
Confidence 9999999999999998654 36789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHh-----------
Q 001421 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVA----------- 468 (1079)
Q Consensus 400 ~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~----------- 468 (1079)
|||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|++
T Consensus 418 ~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~ 497 (1135)
T PLN02248 418 EAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNA 497 (1135)
T ss_pred HHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ----h---------------hccCCcccccccCCCCCCCCC--------CCCCccccceecccCC------------CCC
Q 001421 469 ----K---------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLD 509 (1079)
Q Consensus 469 ----~---------------~~~~p~e~w~m~dgt~wpg~~--------~rdhp~~iqv~l~~~G------------~~d 509 (1079)
+ ++++|+++| |+|||+|||+| ++|||+||||||++++ ..|
T Consensus 498 ~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d 576 (1135)
T PLN02248 498 REEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLID 576 (1135)
T ss_pred hHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCccccccccc
Confidence 1 246789999 99999999994 4699999999998653 113
Q ss_pred CC--CCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEE
Q 001421 510 AE--GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (1079)
Q Consensus 510 ~~--~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~ 587 (1079)
.+ +++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++||
T Consensus 577 ~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAf 655 (1135)
T PLN02248 577 FTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICY 655 (1135)
T ss_pred ccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEE
Confidence 22 448999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred EecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCC
Q 001421 588 VQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNS 667 (1079)
Q Consensus 588 VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1079)
|||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||..++..+. | +|||+.++..+
T Consensus 656 VQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~--~-~~~~~~~~~~~ 732 (1135)
T PLN02248 656 VQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC--F-GSCKFTKKKKK 732 (1135)
T ss_pred EcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc--c-ccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999876543232 2 23334333221
Q ss_pred CcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhh-hcCCCCC------
Q 001421 668 KSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLM-ENGGVPQ------ 740 (1079)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~-e~GG~p~------ 740 (1079)
+.+.. . .. .++++++ ++ .++...++++||+|..|++|+.. +..|.+.
T Consensus 733 ~~~~~---------~---~~---~~~~~~~-------~~----~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~ 786 (1135)
T PLN02248 733 ETSAS---------E---PE---EQPDLED-------DD----DLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSV 786 (1135)
T ss_pred ccccc---------c---cc---ccccccc-------cc----hhhhhhhhhhhccchhhhhhhHHHhhccccccccccc
Confidence 11100 0 00 0111110 11 14567789999999999999843 3232221
Q ss_pred -------------CCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccC
Q 001421 741 -------------SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSA 807 (1079)
Q Consensus 741 -------------~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~a 807 (1079)
...+.++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++|+++++.+|.|++
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlA 866 (1135)
T PLN02248 787 KNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTA 866 (1135)
T ss_pred ccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCC
Confidence 2235689999999999999999999999999999999999999999999999999988888899999
Q ss_pred CCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccch
Q 001421 808 PINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQIS 887 (1079)
Q Consensus 808 Petl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip~~s 887 (1079)
|+|+.++++||+|||+|++||++++++|++. .++|++.|||+|+++++||++++++++|+++|++||++|++++|..+
T Consensus 867 P~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~ 944 (1135)
T PLN02248 867 PINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLN 944 (1135)
T ss_pred CCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 9999999999999999999999999999985 47899999999999999999999999999999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCCCC--CC
Q 001421 888 NLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDED--GD 965 (1079)
Q Consensus 888 ~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~~d--~~ 965 (1079)
..++++++.++++++++.+++++|+|+++++||||||||+|++++++++|++++++|+|++++++|+||+|..+.+ ..
T Consensus 945 ~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~ 1024 (1135)
T PLN02248 945 VTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDE 1024 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccc
Confidence 6555666567788899999999999999999999999999999999999999999999999999999999987643 24
Q ss_pred ccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 001421 966 FTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW 1045 (1079)
Q Consensus 966 ~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~ 1045 (1079)
|+++|+|+|+++++|+++++++|++|+++|++|++.+.++.|+.+++++|+++|+++|+|||+||||||++|+||||++|
T Consensus 1025 ~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~ 1104 (1135)
T PLN02248 1025 FADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVW 1104 (1135)
T ss_pred cchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHH
Confidence 78999999999999999999999999999999999887888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheeecCCCCC
Q 001421 1046 SILLASIFSLLWVRVDPFTTR 1066 (1079)
Q Consensus 1046 s~~la~~~~~lwv~i~~~~~~ 1066 (1079)
|++|++++|||||+|+||+..
T Consensus 1105 s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1105 SGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHHHHHHheEeccccCc
Confidence 999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=3.1e-216 Score=1885.27 Aligned_cols=719 Identities=71% Similarity=1.260 Sum_probs=688.3
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchhhh
Q 001421 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (1079)
Q Consensus 351 VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~yF 430 (1079)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCCCC
Q 001421 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (1079)
Q Consensus 431 ~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~ 510 (1079)
+++.|+++++++|+|++|||+|||||||||+|||+++++.+++|+++|+|+|||+|||++++|||+||||+++++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEec
Q 001421 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (1079)
Q Consensus 511 ~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~ 590 (1079)
+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcC
Q 001421 591 PQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (1079)
Q Consensus 591 PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1079)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+..+.++||+|||++++++++.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777765555555555444332
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHH
Q 001421 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (1079)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~e 750 (1079)
++. +++..++.+++.+++++++++|++++ .++|++..+++++|+++||+|++|++|+.++.|+.+.+.+++++|+|
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEG--SDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccc--hhcccccccccccccccccccccccc--chhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 221 12334567788899999999998877 77888999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccchhHhh
Q 001421 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILF 830 (1079)
Q Consensus 751 ai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~ 830 (1079)
|+||+||+||++|+|||||||.|+++|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||++
T Consensus 397 A~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~f 476 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFF 476 (720)
T ss_pred HHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 001421 831 SRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMR 910 (1079)
Q Consensus 831 ~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip~~s~~~l~~fi~lfls~~~~~lLe~r 910 (1079)
+|+||+|+++.++|+++|||+|++.++|+++++|.++|+++|++||++|++++|++++.++++|+++|+++++++++|++
T Consensus 477 Sr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ 556 (720)
T PF03552_consen 477 SRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFR 556 (720)
T ss_pred hcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCC-CCCCccceeecccccchHHHHHHHHHHH
Q 001421 911 WSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD-EDGDFTELYMFKWTTLLIPPTTLLVINL 989 (1079)
Q Consensus 911 wsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~-~d~~~~~ly~f~ws~L~iP~~~Llilnl 989 (1079)
|+|+++++||||||||+|.++++|+||++++++|+|++++++|+||+|..+ +++.++++|.|+|+++++|+++|+++|+
T Consensus 557 wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNL 636 (720)
T PF03552_consen 557 WSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNL 636 (720)
T ss_pred hccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 3455789999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCC
Q 001421 990 VGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTG 1069 (1079)
Q Consensus 990 igiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~s~~la~~~~~lwv~i~~~~~~~~~ 1069 (1079)
+|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++||++||++|+||||+||||++|++|
T Consensus 637 va~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~~ 716 (720)
T PF03552_consen 637 VAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTTG 716 (720)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 001421 1070 PDVE 1073 (1079)
Q Consensus 1070 ~~~~ 1073 (1079)
|+++
T Consensus 717 ~~~~ 720 (720)
T PF03552_consen 717 PDLK 720 (720)
T ss_pred CCCC
Confidence 9875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=1.9e-196 Score=1720.57 Aligned_cols=726 Identities=36% Similarity=0.645 Sum_probs=656.4
Q ss_pred cCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 001421 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (1079)
Q Consensus 253 ~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~ 332 (1079)
...||++++++++.. ||++.++.+++++.||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.+++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 447999999999985 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhh
Q 001421 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (1079)
Q Consensus 333 drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~W 412 (1079)
|||++||+ +||+|||||+||||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCC--CCCCCCC
Q 001421 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGNN 490 (1079)
Q Consensus 413 vpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dg--t~wpg~~ 490 (1079)
|||||||+|||||||+||+.+.+ .+.+++|++|||+|||||||||+||++.+ +...|.++++ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33568999999999999999999999864 3466777655 6899999
Q ss_pred CCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHH
Q 001421 491 TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALR 570 (1079)
Q Consensus 491 ~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr 570 (1079)
++|||+||||+++++|+ +.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-ceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCC
Q 001421 571 EAMCFMMDPNLG-KHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKH 649 (1079)
Q Consensus 571 ~am~ff~DP~~g-~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~ 649 (1079)
+||||||||+.+ +++|||||||+|+ |+|+|+++||||++|+|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999754 5899999999998 7899999999999999999999999999999999999999988743221
Q ss_pred CCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHH
Q 001421 650 RKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVA 729 (1079)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 729 (1079)
.+. . + . .++ ..+++..++++||+|++|++
T Consensus 382 ~~~----------------~-------------~---~------------------~~~-~~~~~~~~~~~fg~s~~f~~ 410 (756)
T PLN02190 382 GSL----------------S-------------S---V------------------ATR-EFLAEDSLAREFGNSKEMVK 410 (756)
T ss_pred ccc----------------c-------------c---c------------------ccc-cccchhhhhhhcCCcHHHHH
Confidence 000 0 0 0 000 02334567889999999999
Q ss_pred hHhhhcCCCCC-CCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCC
Q 001421 730 STLMENGGVPQ-SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP 808 (1079)
Q Consensus 730 Sal~e~GG~p~-~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aP 808 (1079)
|++++..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++||+|++++|.|.+|
T Consensus 411 s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP 490 (756)
T PLN02190 411 SVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMP 490 (756)
T ss_pred HHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCC
Confidence 99876644332 33457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchh
Q 001421 809 INLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISN 888 (1079)
Q Consensus 809 etl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip~~s~ 888 (1079)
+++.++++||+||+.|++||+++++||+++++.++|++.||++|++.++ |++++|+++|+++|++||++|++++|..
T Consensus 491 ~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~-- 567 (756)
T PLN02190 491 PGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG-- 567 (756)
T ss_pred CChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--
Confidence 9999999999999999999999999999976668999999999999988 9999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCC-------
Q 001421 889 LASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD------- 961 (1079)
Q Consensus 889 ~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~------- 961 (1079)
.++++++++++++++++++|++|+|+++++||||||||+|.++|+|+||++++++|+|+++++.|+||+|..+
T Consensus 568 ~~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~ 647 (756)
T PLN02190 568 VYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSG 647 (756)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccc
Confidence 4567777888899999999999999999999999999999999999999999999999999999999999643
Q ss_pred ------C-CCCc--cceeecccccchHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHHHHHHHH
Q 001421 962 ------E-DGDF--TELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINS---GYQSWGPLFGKLFFAFWVIVHLYPFLK 1029 (1079)
Q Consensus 962 ------~-d~~~--~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~---~~~~w~~l~g~l~~~~Wvv~nL~p~l~ 1029 (1079)
+ +..+ +++|+|+|+++++|+++++++|++|++.|+++.+.+ ..+.|+. ++++++++|+++|++||+|
T Consensus 648 ~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~ 726 (756)
T PLN02190 648 SGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLK 726 (756)
T ss_pred cccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHH
Confidence 1 1122 678999999999999999999999999888876532 2344554 4999999999999999999
Q ss_pred HhhcCC-CCCchhHHHHHHHHHHHHHhhhe
Q 001421 1030 GLMGRQ-NRTPTIVVVWSILLASIFSLLWV 1058 (1079)
Q Consensus 1030 gL~gR~-~r~p~~v~~~s~~la~~~~~lwv 1058 (1079)
|||+|+ +++|.+|++.|++|+.+|.++.|
T Consensus 727 gl~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 727 GLFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 999775 69999999999999999998765
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=2.3e-188 Score=1660.08 Aligned_cols=707 Identities=37% Similarity=0.704 Sum_probs=650.7
Q ss_pred ccCCCCeeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 001421 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 330 (1079)
Q Consensus 252 ~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~ 330 (1079)
....||+.++++++.. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3567999999988874 6999999999999999999999877655 789999999999999999999999999999999
Q ss_pred hhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhh
Q 001421 331 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 410 (1079)
Q Consensus 331 ~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~ 410 (1079)
++|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997764 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCC-----CC
Q 001421 411 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 485 (1079)
Q Consensus 411 ~WvpfCkk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dg-----t~ 485 (1079)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 567899999999999999999999976 889888 655443 78
Q ss_pred CCCCC-CCCCccccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 001421 486 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (1079)
Q Consensus 486 wpg~~-~rdhp~~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~ 564 (1079)
|++|+ ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++|+||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98875 78999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCC
Q 001421 565 NSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP 644 (1079)
Q Consensus 565 ~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~ 644 (1079)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997321
Q ss_pred CCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccch
Q 001421 645 LKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (1079)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 724 (1079)
.. .+++++ ++
T Consensus 393 ~~---------------------------------------------~~~~~~-----------------------~~-- 402 (734)
T PLN02893 393 LI---------------------------------------------LPEIPE-----------------------LN-- 402 (734)
T ss_pred cc---------------------------------------------chhhhh-----------------------cc--
Confidence 00 000000 00
Q ss_pred HHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCccc
Q 001421 725 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 804 (1079)
Q Consensus 725 ~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~ 804 (1079)
..++...++...++++||+||+||.||++|+||++|||.|+|+|||+.||++||++|||++|++|++.+|.
T Consensus 403 ---------~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~ 473 (734)
T PLN02893 403 ---------PDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFL 473 (734)
T ss_pred ---------cccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhc
Confidence 01122334556789999999999999999999999999999999999999999999999999998888889
Q ss_pred ccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 001421 805 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMP 884 (1079)
Q Consensus 805 G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip 884 (1079)
|++|+|+.++++||+||+.|++||+++++||+++|. ++|++.||++|++.++||++++|+++|+++|++||++|++++|
T Consensus 474 G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p 552 (734)
T PLN02893 474 GDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFP 552 (734)
T ss_pred cCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999999999999754 7899999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCCCCC
Q 001421 885 QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 964 (1079)
Q Consensus 885 ~~s~~~l~~fi~lfls~~~~~lLe~rwsgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~~d~ 964 (1079)
..+..++++++.+++++++++++|++|+|.++++||||||||+|.++++++++++++++|.|++++++|+||+|+.+.+.
T Consensus 553 ~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~ 632 (734)
T PLN02893 553 KASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQ 632 (734)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccc
Confidence 98888888888899999999999999999999999999999999999999999999999999999999999999976422
Q ss_pred --Cc-cceeeccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCC--CC
Q 001421 965 --DF-TELYMFKW-TTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQN--RT 1038 (1079)
Q Consensus 965 --~~-~~ly~f~w-s~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~gR~~--r~ 1038 (1079)
.+ .++|+|+| +++++|+++++++|++|+++|+++++.++ .|+.+++++++++|+++|++||++||++|++ |+
T Consensus 633 ~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~~--~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~ 710 (734)
T PLN02893 633 SKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQR--NLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKL 710 (734)
T ss_pred ccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 23 48999995 88999999999999999999999998753 5788899999999999999999999999986 99
Q ss_pred chhHHHHHHHHHHHHHhh
Q 001421 1039 PTIVVVWSILLASIFSLL 1056 (1079)
Q Consensus 1039 p~~v~~~s~~la~~~~~l 1056 (1079)
|++|++||++||.++.++
T Consensus 711 P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 711 PVKITLISIVLAWALYLA 728 (734)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 999999999999877664
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=1.3e-67 Score=642.95 Aligned_cols=495 Identities=25% Similarity=0.397 Sum_probs=388.4
Q ss_pred HH-HHHHHHHHHHHHHHHHhhcccchh----HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHhhhhccCCCCC
Q 001421 272 RM-VIFLRLIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 346 (1079)
Q Consensus 272 R~-~i~~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~ 346 (1079)
|+ ++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|.+. ..+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 44 566677778999999999887632 3456778999999999999988888888877642 1233467
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001421 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (1079)
Q Consensus 347 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaP 426 (1079)
.+|+|||+||||| |++.++++|+.+++++|||.||+.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 8999999999998 9999999999999999999999999999999877432211110
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCC
Q 001421 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (1079)
Q Consensus 427 e~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G 506 (1079)
+.|. ++..+++ .+++++
T Consensus 185 -------------------~~~~---~~~~~~~----~~l~~~------------------------------------- 201 (713)
T TIGR03030 185 -------------------QAEA---AQRREEL----KEFCRK------------------------------------- 201 (713)
T ss_pred -------------------hhhh---hhhHHHH----HHHHHH-------------------------------------
Confidence 0000 0001122 223311
Q ss_pred CCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceE
Q 001421 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHV 585 (1079)
Q Consensus 507 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~v 585 (1079)
.++.|+.|++ |+|+||||||++++. ++||||+++||||+ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1389999988 788999999999997 79999999999998 7999999999988 588 89
Q ss_pred EEEecCccccCCCcc-------cccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccc
Q 001421 586 CYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSL 658 (1079)
Q Consensus 586 ~~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~ 658 (1079)
++||+||.|+|.|+. +++.+++.+||+.+++|+|.++++++|||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998754 34567888999999999999999999999999999888
Q ss_pred cCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCC
Q 001421 659 FGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGV 738 (1079)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~ 738 (1079)
+++||+
T Consensus 320 --------------------------------------------------------------------------~~iGGf 325 (713)
T TIGR03030 320 --------------------------------------------------------------------------DEIGGI 325 (713)
T ss_pred --------------------------------------------------------------------------HHcCCC
Confidence 356775
Q ss_pred CCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHH
Q 001421 739 PQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQV 818 (1079)
Q Consensus 739 p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR 818 (1079)
+. ++++||++++++|+++||+++|+++.. ++|++|+|++++++||
T Consensus 326 ~~---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~--~~g~~p~sl~~~~~Qr 370 (713)
T TIGR03030 326 AG---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPL--IAGLAPETLSGHIGQR 370 (713)
T ss_pred CC---------------------------------CCcCcHHHHHHHHHHcCCeEEEecccc--ccccCCCCHHHHHHHH
Confidence 54 689999999999999999999997543 4899999999999999
Q ss_pred HHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHH
Q 001421 819 LRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLF 898 (1079)
Q Consensus 819 ~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip~~s~~~l~~fi~lf 898 (1079)
.||++|++|+++. .+|++ .+++++.||++|+++++||+.++++++|+++|++++++|..++++....++ ..+
T Consensus 371 ~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~~----~~~ 442 (713)
T TIGR03030 371 IRWAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALEIL----AYA 442 (713)
T ss_pred HHHhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHHHH----HHH
Confidence 9999999999975 48997 689999999999999999999999999999999999999999886432222 222
Q ss_pred HHHHHHHHHhhhc-ccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCCCCCCccceeecccccc
Q 001421 899 LSIFATGILEMRW-SGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTL 977 (1079)
Q Consensus 899 ls~~~~~lLe~rw-sgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~L 977 (1079)
+++++.+++.+.| .|.....||+ | ++.+....+.+...+.+.+++++.+|+||||++..+..+ .+++
T Consensus 443 lp~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~~-------~~~~ 510 (713)
T TIGR03030 443 LPHMLHSLLTNSYLFGRVRWPFWS-E----VYETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDEDY-------FSPL 510 (713)
T ss_pred HHHHHHHHHHHHHHcCCeecchHH-H----HHHHHHHHHHHHHHHHHHhCcCCCCceecCCCccccccc-------cchH
Confidence 4444555544333 3444456775 3 233223334344556667889999999999998654332 2358
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh---cCCC
Q 001421 978 LIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM---GRQN 1036 (1079)
Q Consensus 978 ~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL~---gR~~ 1036 (1079)
++|+++++++|++|+++|+++.+.++. ...+.+++++|.++|++.+..++. +|++
T Consensus 511 ~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~~~~~r~Q 568 (713)
T TIGR03030 511 SRPYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALAVVAERRQ 568 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 899999999999999999999865432 234568999999999998887773 5543
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=2.2e-67 Score=642.34 Aligned_cols=478 Identities=26% Similarity=0.434 Sum_probs=379.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccch----hHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHhhhhccCCCCCCC
Q 001421 273 MVIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQL 348 (1079)
Q Consensus 273 ~~i~~~l~~l~~yl~wRi~~~~~~----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~l 348 (1079)
+++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. +.|...+.+
T Consensus 188 ~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~ 259 (852)
T PRK11498 188 MLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLW 259 (852)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCC
Confidence 467778888999999999988763 34566778999999999999988888888877632 223345678
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~ 428 (1079)
|+|||+||||| ||+.++++||.+++++|||.+|+.|||+|||.++- +.
T Consensus 260 P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~---------------------- 307 (852)
T PRK11498 260 PTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FR---------------------- 307 (852)
T ss_pred CcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HH----------------------
Confidence 99999999999 99999999999999999999999999999998761 11
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCC
Q 001421 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~ 508 (1079)
+ ++++
T Consensus 308 -----------------------------~-------la~~--------------------------------------- 312 (852)
T PRK11498 308 -----------------------------Q-------FAQE--------------------------------------- 312 (852)
T ss_pred -----------------------------H-------HHHH---------------------------------------
Confidence 1 1100
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEE
Q 001421 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 587 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~v~~ 587 (1079)
.++.|+.|++ |.|+||||+|++++. ++||||+++||||+ +.+++|+++|++| .|| ++|+
T Consensus 313 -------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~Vgl 372 (852)
T PRK11498 313 -------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAM 372 (852)
T ss_pred -------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEE
Confidence 0278999876 678999999999997 79999999999997 8999999999865 799 8999
Q ss_pred EecCccccCCCcccc-------cccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccC
Q 001421 588 VQFPQRFDGIDRNDR-------YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG 660 (1079)
Q Consensus 588 VQ~PQ~F~nid~~Dr-------~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~ 660 (1079)
||+||.|+|.|+.++ +.++++.||+..++|+|.++++++|||++++||+||
T Consensus 373 VQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL---------------------- 430 (852)
T PRK11498 373 MQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL---------------------- 430 (852)
T ss_pred EEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH----------------------
Confidence 999999999886432 467888999999999999999999999999999888
Q ss_pred CCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCC
Q 001421 661 GSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQ 740 (1079)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~ 740 (1079)
+|+||+++
T Consensus 431 ------------------------------------------------------------------------eeVGGfd~ 438 (852)
T PRK11498 431 ------------------------------------------------------------------------DEIGGIAV 438 (852)
T ss_pred ------------------------------------------------------------------------HHhcCCCC
Confidence 36788765
Q ss_pred CCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHH
Q 001421 741 SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLR 820 (1079)
Q Consensus 741 ~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~R 820 (1079)
++++||++++++|+++||+++|+++.. ..|++|+|++++++||.|
T Consensus 439 ---------------------------------~titED~dlslRL~~~Gyrv~yl~~~~--a~glaPesl~~~~~QR~R 483 (852)
T PRK11498 439 ---------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQ--AAGLATESLSAHIGQRIR 483 (852)
T ss_pred ---------------------------------CccCccHHHHHHHHHcCCEEEEEeccc--eeEECCCCHHHHHHHHHH
Confidence 589999999999999999999996544 389999999999999999
Q ss_pred HhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Q 001421 821 WALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLS 900 (1079)
Q Consensus 821 WA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~iip~~s~~~l~~fi~lfls 900 (1079)
|++|++|+++. ++|++ ++++++.||++|+++++|++.+++.++|+++|++|+++|..++.+....+++ .+++
T Consensus 484 WarG~lQi~r~-~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i~~----y~lP 555 (852)
T PRK11498 484 WARGMVQIFRL-DNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIAL----FVLP 555 (852)
T ss_pred HHHHHHHHHHH-hChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHHHH----HHHH
Confidence 99999999975 68997 6899999999999999999999999999999999999999888643222122 2234
Q ss_pred HHHHHHHhhhc-ccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeeCCCCCCCCCCccceeecccccchH
Q 001421 901 IFATGILEMRW-SGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLI 979 (1079)
Q Consensus 901 ~~~~~lLe~rw-sgvsi~~wWrneqfW~i~~vsa~LfAvl~aLLk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~L~i 979 (1079)
.++...+...| +|.....||+ | ++..++++.++ ...+...+++++.+|+||+|++..+... |+|. ++.
T Consensus 556 ~~~~~~l~~~~~~g~~r~~~ws-e---iye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~~-----~~~~-~~~ 624 (852)
T PRK11498 556 HMIHASLTNSRIQGKYRHSFWS-E---IYETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEEY-----VDWV-ISR 624 (852)
T ss_pred HHHHHHHHHHHhcCcchHhHHH-H---HHHHHHHHHHH-HHHHHHHcCccCCCcccCCCCccccccc-----eehH-HHH
Confidence 44443333333 2322233342 2 13334444443 3334446788999999999998654332 4564 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh---hcCCC
Q 001421 980 PPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL---MGRQN 1036 (1079)
Q Consensus 980 P~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nL~p~l~gL---~gR~~ 1036 (1079)
|+++++++|++|+++|+++.+.+.. ....+.+++++|+++|++.+..++ ++|+.
T Consensus 625 P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~~~~~e~~~ 681 (852)
T PRK11498 625 PYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAVAVSVESKQ 681 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999875432 223456799999999999887776 35543
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=7.2e-45 Score=320.66 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.1
Q ss_pred CccccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcCCCC
Q 001421 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 88 (1079)
Q Consensus 9 ~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e~~~ 88 (1079)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|| |||||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999 566665
Q ss_pred C
Q 001421 89 D 89 (1079)
Q Consensus 89 d 89 (1079)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=6.3e-36 Score=361.97 Aligned_cols=362 Identities=17% Similarity=0.210 Sum_probs=245.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccchh---------HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHhhhhc
Q 001421 270 PYRMVIFLRLIILGIFLYYRIKNPVHNA---------IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 340 (1079)
Q Consensus 270 ~yR~~i~~~l~~l~~yl~wRi~~~~~~a---------~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~ 340 (1079)
..|+++++..++.+.|..|+....+... ..+-.+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 4677778888888999999987654311 112223334444444444444332211 11111 0100000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhh
Q 001421 341 REGEPSQLAAVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 416 (1079)
Q Consensus 341 ~~~~~~~lp~VDvfV~T~dp~kEpp~v~----~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfC 416 (1079)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456799999999999 998754 4555677779998 589999999998872111
Q ss_pred hhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCcc
Q 001421 417 KKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPG 496 (1079)
Q Consensus 417 kk~~iepRaPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~ 496 (1079)
.|+ +.++++.. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 111 12333321 10
Q ss_pred ccceecccCCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh
Q 001421 497 MIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (1079)
Q Consensus 497 ~iqv~l~~~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff 576 (1079)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 013599999887 77889999999999765 67899999999998 7999999999988
Q ss_pred c-CCCCCceEEEEecCccccCCCcc-ccccc-chhhhhhhhccccccCC--CccccccCchhhhhhhcCCCCCCCCCCCC
Q 001421 577 M-DPNLGKHVCYVQFPQRFDGIDRN-DRYAN-RNTVFFDINLRGLDGIQ--GPVYVGTGCVFNRTALYGYEPPLKPKHRK 651 (1079)
Q Consensus 577 ~-DP~~g~~v~~VQ~PQ~F~nid~~-Dr~~n-~~~vFfdi~~~glDg~q--gp~yvGTgcvfRR~ALyg~~p~~~~~~~~ 651 (1079)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+| ...|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 99 89999999999987631 22211 23455566777888776 357899999999998852
Q ss_pred CCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhH
Q 001421 652 PGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST 731 (1079)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sa 731 (1079)
T Consensus 311 -------------------------------------------------------------------------------- 310 (691)
T PRK05454 311 -------------------------------------------------------------------------------- 310 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCH
Q 001421 732 LMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINL 811 (1079)
Q Consensus 732 l~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl 811 (1079)
.||.|.- . ...||..++++||++++.+|+++||+++|+++ ...+++++|+|+
T Consensus 311 ---~~glp~L------------------~------g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl 362 (691)
T PRK05454 311 ---HCGLPPL------------------P------GRGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNL 362 (691)
T ss_pred ---hcCCccc------------------c------ccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCH
Confidence 2222110 0 00134457999999999999999999999954 333589999999
Q ss_pred HHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHH-HHHHHHH
Q 001421 812 SDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMY-CTLPAVC 875 (1079)
Q Consensus 812 ~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liy-lllPil~ 875 (1079)
.++++||.||++|++|++.. ++ .+++++.+|+.|++.++.++.+...+++ ++.|++.
T Consensus 363 ~~~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l~~~~~ 420 (691)
T PRK05454 363 LDELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLLGTALA 420 (691)
T ss_pred HHHHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999852 23 5789999999999877766665444333 3444433
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=8.8e-34 Score=307.99 Aligned_cols=182 Identities=21% Similarity=0.297 Sum_probs=145.8
Q ss_pred CcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCccc
Q 001421 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~-DP~~g~~v~~VQ~PQ~F 594 (1079)
++++|++|++ ++|+||||||+++...+ +++|||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 55679999999998532 58899999999997 79999999999885 99 89999999999
Q ss_pred cCCCcc-ccc-ccchhhhhhhhccccccCCC--ccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcC
Q 001421 595 DGIDRN-DRY-ANRNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (1079)
Q Consensus 595 ~nid~~-Dr~-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1079)
.|.+.. .+. +-.+..|..+.+.|++.|++ .+|+||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-------------~--------------- 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-------------C--------------- 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-------------c---------------
Confidence 997642 221 11356677788888887654 688999999999998421 0
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHH
Q 001421 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (1079)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~e 750 (1079)
.+.++||+.
T Consensus 188 ------------------------------------------------------------~~~~i~g~g----------- 196 (254)
T cd04191 188 ------------------------------------------------------------ALPVLPGRP----------- 196 (254)
T ss_pred ------------------------------------------------------------CCccccCCC-----------
Confidence 001234321
Q ss_pred HHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccchh
Q 001421 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 827 (1079)
Q Consensus 751 ai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQ 827 (1079)
||..++++||+++|++++.+||+++|.+... +.++++|+|++++++||.||++|++|
T Consensus 197 -------------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~-~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -------------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLE-GSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -------------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCc-ceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 4666899999999999999999999995433 23789999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.5e-30 Score=297.32 Aligned_cols=233 Identities=30% Similarity=0.439 Sum_probs=170.6
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCch
Q 001421 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (1079)
Q Consensus 348 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe 427 (1079)
+|.|||+||+|| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+. +++.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~--------------~~~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILE--------------ELGA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHH--------------HHHh------
Confidence 699999999998 99999999999999999995 8899999999874444221 1110
Q ss_pred hhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCC
Q 001421 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (1079)
Q Consensus 428 ~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~ 507 (1079)
+. +..+
T Consensus 108 ------------------------------~~-----------------------------------~~~~--------- 113 (439)
T COG1215 108 ------------------------------EY-----------------------------------GPNF--------- 113 (439)
T ss_pred ------------------------------hc-----------------------------------Ccce---------
Confidence 00 0000
Q ss_pred CCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEE
Q 001421 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (1079)
Q Consensus 508 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~ 587 (1079)
+++|. ++ .++.|+||+|.++.. +.+|+|+++|||++ +.+++|++++..|.|+. .++.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 01211 22 678899999999997 56999999999997 89999999999999875 3479
Q ss_pred EecCccccCCCcccccccchhhhhhh-----hccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCC
Q 001421 588 VQFPQRFDGIDRNDRYANRNTVFFDI-----NLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 662 (1079)
Q Consensus 588 VQ~PQ~F~nid~~Dr~~n~~~vFfdi-----~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 662 (1079)
+|+||.+.+.++.........+.|.. ...+.++....++.
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------------------------------- 215 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLS----------------------------------- 215 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEc-----------------------------------
Confidence 99999998876411111111111111 11111221233334
Q ss_pred cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCC
Q 001421 663 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 742 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~ 742 (1079)
|.+..||+++|+++||
T Consensus 216 -----------------------------------------------------------G~~~~~rr~aL~~~g~----- 231 (439)
T COG1215 216 -----------------------------------------------------------GSSSAFRRSALEEVGG----- 231 (439)
T ss_pred -----------------------------------------------------------ceeeeEEHHHHHHhCC-----
Confidence 4444555566667775
Q ss_pred chHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHh
Q 001421 743 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 822 (1079)
Q Consensus 743 ~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA 822 (1079)
|...++|||.+++++|+.+|||+.|+++. .+++++|+|+.++++||.||+
T Consensus 232 ----------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~ 281 (439)
T COG1215 232 ----------------------------WLEDTITEDADLTLRLHLRGYRVVYVPEA--IVWTEAPETLKELWRQRLRWA 281 (439)
T ss_pred ----------------------------CCCCceeccHHHHHHHHHCCCeEEEeecc--eEeeeCcccHHHHHHHHHHHH
Confidence 44579999999999999999999999754 359999999999999999999
Q ss_pred ccchhHhhh
Q 001421 823 LGSVEILFS 831 (1079)
Q Consensus 823 ~G~lQIl~~ 831 (1079)
+|++|++..
T Consensus 282 ~g~~~~~~~ 290 (439)
T COG1215 282 RGGLQVLLL 290 (439)
T ss_pred cccceeeeh
Confidence 999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=1.9e-28 Score=284.86 Aligned_cols=233 Identities=21% Similarity=0.236 Sum_probs=165.8
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001421 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 346 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRa 425 (1079)
...|.|+|+||+|| |+. .+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999998 875 568999999999999 589999999988633322111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccC
Q 001421 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 505 (1079)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCce
Q 001421 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (1079)
Q Consensus 506 G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~ 584 (1079)
.|++.++.++++ ..||+|+|++++. +++||++++|+|++ ++|++|++.+..| .|| +
T Consensus 129 ---------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 023555555443 2499999999986 68999999999997 7999999999755 577 7
Q ss_pred EEEEecCccccCCCcc-ccc-ccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCC
Q 001421 585 VCYVQFPQRFDGIDRN-DRY-ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 662 (1079)
Q Consensus 585 v~~VQ~PQ~F~nid~~-Dr~-~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 662 (1079)
++.||..++..|.+.. .+. ..+...++....++.+..+..+.+
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~----------------------------------- 230 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTV----------------------------------- 230 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEe-----------------------------------
Confidence 9999998776543211 111 011222233333332222222111
Q ss_pred cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCC
Q 001421 663 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 742 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~ 742 (1079)
-|.+..||+++++++||+
T Consensus 231 ----------------------------------------------------------sG~~~~~rr~al~~vGg~---- 248 (444)
T PRK14583 231 ----------------------------------------------------------SGVVAAFRRRALADVGYW---- 248 (444)
T ss_pred ----------------------------------------------------------cCceeEEEHHHHHHcCCC----
Confidence 023334555666778864
Q ss_pred chHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHh
Q 001421 743 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 822 (1079)
Q Consensus 743 ~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA 822 (1079)
..+.++||++++++|+.+||++.|++.. .+++++|+|++++++||.||+
T Consensus 249 -----------------------------~~~~i~ED~dl~~rl~~~G~~i~~~p~a--~~~~~~p~t~~~~~~Qr~RW~ 297 (444)
T PRK14583 249 -----------------------------SPDMITEDIDISWKLQLKHWSVFFEPRG--LCWILMPETLRGLWKQRLRWA 297 (444)
T ss_pred -----------------------------CCCcccccHHHHHHHHHcCCeEEEeecc--EEeeeCCCCHHHHHHHHHHHh
Confidence 4468999999999999999999999643 459999999999999999999
Q ss_pred ccchhHhhhc
Q 001421 823 LGSVEILFSR 832 (1079)
Q Consensus 823 ~G~lQIl~~r 832 (1079)
+|.+|+++++
T Consensus 298 ~G~~~~~~~~ 307 (444)
T PRK14583 298 QGGAEVFLKN 307 (444)
T ss_pred CcHHHHHHHH
Confidence 9999999864
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=5e-27 Score=269.42 Aligned_cols=236 Identities=25% Similarity=0.310 Sum_probs=167.5
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001421 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 424 (1079)
....|.|.|+||+|| |+ ..+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 356899999999998 75 6789999999999999 67899999998863222111
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceeccc
Q 001421 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 504 (1079)
+ +++
T Consensus 103 ---------------------------------~-------~~~------------------------------------ 106 (420)
T PRK11204 103 ---------------------------------R-------LAA------------------------------------ 106 (420)
T ss_pred ---------------------------------H-------HHH------------------------------------
Confidence 1 110
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 001421 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 583 (1079)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~ 583 (1079)
+.|++.++.++++. .||+|+|.+++. +++||++++|+|.+ +.|++|++++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 01347777766533 399999999986 68999999999997 7999999999887 688
Q ss_pred eEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 001421 584 HVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 663 (1079)
+++.||...+..|... ..+..+...|... . |..-+-+.++|..
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~--------------------- 206 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSI------------I--GLIKRAQRVYGRV--------------------- 206 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHh------------h--hHHHHHHHHhCCc---------------------
Confidence 8999999877655321 1110000000000 0 0000001111100
Q ss_pred ccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCc
Q 001421 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~ 743 (1079)
..--|.+..||+++++++||+.+
T Consensus 207 ------------------------------------------------------~~~~G~~~~~rr~~l~~vgg~~~--- 229 (420)
T PRK11204 207 ------------------------------------------------------FTVSGVITAFRKSALHEVGYWST--- 229 (420)
T ss_pred ------------------------------------------------------eEecceeeeeeHHHHHHhCCCCC---
Confidence 00014445677778888887544
Q ss_pred hHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhc
Q 001421 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 744 ~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~ 823 (1079)
..++||++++++++++||++.|+++. .++++.|+|++++++||.||++
T Consensus 230 ------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~~--~~~~~~p~t~~~~~~Qr~RW~~ 277 (420)
T PRK11204 230 ------------------------------DMITEDIDISWKLQLRGWDIRYEPRA--LCWILMPETLKGLWKQRLRWAQ 277 (420)
T ss_pred ------------------------------CcccchHHHHHHHHHcCCeEEecccc--EEEeECcccHHHHHHHHHHHhc
Confidence 57899999999999999999999643 3599999999999999999999
Q ss_pred cchhHhhhc
Q 001421 824 GSVEILFSR 832 (1079)
Q Consensus 824 G~lQIl~~r 832 (1079)
|++|.+++.
T Consensus 278 G~~~~l~~~ 286 (420)
T PRK11204 278 GGAEVLLKN 286 (420)
T ss_pred CHHHHHHHH
Confidence 999999754
No 19
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=2.6e-27 Score=275.25 Aligned_cols=293 Identities=15% Similarity=0.191 Sum_probs=192.5
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001421 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 424 (1079)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||.++-|.+.+.|+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467899999999998 76 7899999999999999999999999999987444322221
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceeccc
Q 001421 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 504 (1079)
+ ++ +
T Consensus 102 -----------------------------------~-------~~------------------------~---------- 105 (439)
T TIGR03111 102 -----------------------------------Q-------NE------------------------F---------- 105 (439)
T ss_pred -----------------------------------H-------Hh------------------------C----------
Confidence 0 00 0
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 001421 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (1079)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~-DP~~g~ 583 (1079)
|++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ +++++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 111 121111 125699999999996 68999999999998 79999999998875 77
Q ss_pred eEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhh--hhhhcCCCCCCCCCCCCCCCcccccCC
Q 001421 584 HVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFN--RTALYGYEPPLKPKHRKPGLLSSLFGG 661 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfR--R~ALyg~~p~~~~~~~~~~~~~~~~~~ 661 (1079)
+++.|+..+.- +.+..+...+ .+...... ...++ +..+.|. +. +...+. .|
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~---~~~~~~~~-------------~~~~~y~~~~l~~r-~~--~s~~~~----~~--- 213 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKG---RFLKLIRR-------------CEYFEYAQAFLAGR-NF--ESQVNS----LF--- 213 (439)
T ss_pred CeEEEEeEEec-Cchhhhhhcc---hhhhHhHH-------------hHHHHHHHHHHhhh-HH--HHhcCC----eE---
Confidence 56666544321 1110000000 00000000 00000 0000000 00 000000 00
Q ss_pred CcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCC
Q 001421 662 SRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQS 741 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~ 741 (1079)
--.|....||+++++++||++.
T Consensus 214 ---------------------------------------------------------~~sGa~~~~Rr~~l~~vggf~~- 235 (439)
T TIGR03111 214 ---------------------------------------------------------TLSGAFSAFRRETILKTQLYNS- 235 (439)
T ss_pred ---------------------------------------------------------EEccHHHhhhHHHHHHhCCCCC-
Confidence 0125566899999999998664
Q ss_pred CchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHH-CCCEEEEecCCCCcccccCCCCHHHHHHHHHH
Q 001421 742 ATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHA-RGWRSIYCMPKRPAFKGSAPINLSDRLNQVLR 820 (1079)
Q Consensus 742 ~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~-rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~R 820 (1079)
++++||++++++++. .|+++.|+.+ +.++.++|+|++++++||.|
T Consensus 236 --------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~--a~~~~~~p~t~~~~~~QR~R 281 (439)
T TIGR03111 236 --------------------------------ETVGEDTDMTFQIRELLDGKVYLCEN--AIFYVDPIDGLNKLYTQRQR 281 (439)
T ss_pred --------------------------------CCcCccHHHHHHHHHhcCCeEEECCC--CEEEEECCcCHHHHHHHHHH
Confidence 689999999999975 6999999954 44689999999999999999
Q ss_pred HhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccc
Q 001421 821 WALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIM 883 (1079)
Q Consensus 821 WA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~Ll~G~~ii 883 (1079)
|++|.+|++.....+.. +.+.++.+++.+...+.++...+|.+++.++++++.++|..+.
T Consensus 282 W~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 282 WQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999975443333 3446666666555555566667788888888888877775433
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=6.3e-25 Score=258.73 Aligned_cols=265 Identities=20% Similarity=0.229 Sum_probs=178.2
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001421 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 347 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRa 425 (1079)
..|+|+|+||.+| |. .++.+||.|++ ++||| ++.|+|.||+..+-|.+.+.|.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999998 86 78999999975 79996 7999999998887544432221
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccC
Q 001421 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 505 (1079)
++ .||+
T Consensus 118 -----------------------------------------~~------------------------~~p~--------- 123 (504)
T PRK14716 118 -----------------------------------------AA------------------------RYPR--------- 123 (504)
T ss_pred -----------------------------------------HH------------------------HCCC---------
Confidence 10 1222
Q ss_pred CCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhc--ccCCC---CEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 001421 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSA--VLTNG---PFLLNLDCDHYINNSKALREAMCFMMDPN 580 (1079)
Q Consensus 506 G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa--v~tng---p~il~lDcDh~i~~~~~Lr~am~ff~DP~ 580 (1079)
+..+. .+++| .+.||+|||.+++..- ....| ++|+++|||.+ ++|++|+....++.|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 22111 12222 3579999999987521 01234 99999999997 799999976555444
Q ss_pred CCceEEEEecCccccCCCcccc----cccchhhhhhhhccccccCCCcc-ccccCchhhhhhhcCCCCCCCCCCCCCCCc
Q 001421 581 LGKHVCYVQFPQRFDGIDRNDR----YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGLL 655 (1079)
Q Consensus 581 ~g~~v~~VQ~PQ~F~nid~~Dr----~~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~ 655 (1079)
.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 458999987665433322 22222222333456667777654 678888888887720
Q ss_pred ccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhc
Q 001421 656 SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMEN 735 (1079)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~ 735 (1079)
...+.
T Consensus 247 ---------------------------------------------------------------------------l~~~~ 251 (504)
T PRK14716 247 ---------------------------------------------------------------------------LAAER 251 (504)
T ss_pred ---------------------------------------------------------------------------HHhhc
Confidence 00122
Q ss_pred CCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCC-------------c
Q 001421 736 GGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRP-------------A 802 (1079)
Q Consensus 736 GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~a-------------a 802 (1079)
||. +|..+++|||+++|++++.+|||++|++.... +
T Consensus 252 GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~ 300 (504)
T PRK14716 252 GGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIA 300 (504)
T ss_pred CCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccc
Confidence 441 26668999999999999999999999965421 2
Q ss_pred ccccCCCCHHHHHHHHHHHhccc-hhHhhhcc--cccccccCCCCCcccchhhhhhhh
Q 001421 803 FKGSAPINLSDRLNQVLRWALGS-VEILFSRH--CPIWYGYGGRLKFLERFAYVNTTI 857 (1079)
Q Consensus 803 f~G~aPetl~a~lkQR~RWA~G~-lQIl~~r~--~PL~~g~~~~Lt~~QRL~Yl~~~l 857 (1079)
+++++|+|++++++||.||++|- +|...+.- .++. .+.+.|.+|...+...+
T Consensus 301 t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 301 TREFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred ccccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 45889999999999999999994 78764311 1121 23466777777665544
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=6.6e-25 Score=228.48 Aligned_cols=229 Identities=37% Similarity=0.588 Sum_probs=173.9
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~ 428 (1079)
|.|.|+||||| |++..+..++.|+++.+||.+++.++|.|||.+.-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999998 8888999999999999999988999999999875222110
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCC
Q 001421 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~ 508 (1079)
+++..+
T Consensus 52 -----------------------------------~~~~~~--------------------------------------- 57 (234)
T cd06421 52 -----------------------------------AELGVE--------------------------------------- 57 (234)
T ss_pred -----------------------------------HHhhcc---------------------------------------
Confidence 011000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC-CCCCceEEE
Q 001421 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-PNLGKHVCY 587 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~D-P~~g~~v~~ 587 (1079)
.++.|+.+++ +...|+||+|++++. .+++||+.+|+|.+ ..|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0256666665 445699999999996 58999999999998 689999999999876 7 8999
Q ss_pred EecCccccCCCccc----ccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 001421 588 VQFPQRFDGIDRND----RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (1079)
Q Consensus 588 VQ~PQ~F~nid~~D----r~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 663 (1079)
||+++.+.+.+..+ .+......|+.....+........+.|++.+|||++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~-------------------------- 171 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREA-------------------------- 171 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHH--------------------------
Confidence 99999998776542 223334444444444443344445555555555544
Q ss_pred ccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCc
Q 001421 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~ 743 (1079)
++++||++.
T Consensus 172 --------------------------------------------------------------------~~~ig~~~~--- 180 (234)
T cd06421 172 --------------------------------------------------------------------LDEIGGFPT--- 180 (234)
T ss_pred --------------------------------------------------------------------HHHhCCCCc---
Confidence 456787664
Q ss_pred hHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhc
Q 001421 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 744 ~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~ 823 (1079)
..+.||++++++|+.+||+++|.+... +++..|.+++++++||.||.+
T Consensus 181 ------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~ 228 (234)
T cd06421 181 ------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPL--AAGLAPETLAAYIKQRLRWAR 228 (234)
T ss_pred ------------------------------cceeccHHHHHHHHHcCceEEEecCcc--ccccCCccHHHHHHHHHHHhc
Confidence 467899999999999999999996543 489999999999999999999
Q ss_pred cchhHh
Q 001421 824 GSVEIL 829 (1079)
Q Consensus 824 G~lQIl 829 (1079)
|++|++
T Consensus 229 ~~~~~~ 234 (234)
T cd06421 229 GMLQIL 234 (234)
T ss_pred CCeeeC
Confidence 999864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=6.4e-24 Score=259.15 Aligned_cols=171 Identities=20% Similarity=0.332 Sum_probs=122.7
Q ss_pred CchhhhhHHHHHhhccc---CCC--CEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccc----
Q 001421 532 HKKAGAMNALVRVSAVL---TNG--PFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDR---- 602 (1079)
Q Consensus 532 h~KAGalNallrvSav~---tng--p~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr---- 602 (1079)
+.||+|||.++....-. +.+ +.++++|||.+ +.|++|+ .+.+|+++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 46999999999863111 133 56888999997 7999998 67888887 4 79999966333222222
Q ss_pred cccchhhhhhhhccccccCCCc-cccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCC
Q 001421 603 YANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSK 681 (1079)
Q Consensus 603 ~~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1079)
|..+....+...+++++.++|+ .+.|+|++|.|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 2233333445667788888665 45677888844433
Q ss_pred CCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcC-CCCCCCchHhHHHHHHHhcccccc
Q 001421 682 HVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENG-GVPQSATHETLLKEAIHVISCGYE 760 (1079)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~G-G~p~~~~~~~~~~eai~V~sC~Ye 760 (1079)
+++.+.| |+
T Consensus 242 ------------------------------------------------~al~~~ggg~---------------------- 251 (727)
T PRK11234 242 ------------------------------------------------TALLEDGDGI---------------------- 251 (727)
T ss_pred ------------------------------------------------HHHHHhcCCC----------------------
Confidence 1234455 42
Q ss_pred cccccccccCcccccccchHHHHHHHHHCCCEEEEecCCC---------------------CcccccCCCCHHHHHHHHH
Q 001421 761 DKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR---------------------PAFKGSAPINLSDRLNQVL 819 (1079)
Q Consensus 761 ~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~---------------------aaf~G~aPetl~a~lkQR~ 819 (1079)
||..+++|||+++|++|+.+||+++|++..+ .++++..|+|+++.++||.
T Consensus 252 ---------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~ 322 (727)
T PRK11234 252 ---------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKS 322 (727)
T ss_pred ---------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHH
Confidence 4788999999999999999999999996111 3367888999999999999
Q ss_pred HHhcc-chhHhhh
Q 001421 820 RWALG-SVEILFS 831 (1079)
Q Consensus 820 RWA~G-~lQIl~~ 831 (1079)
||.+| .+|.+..
T Consensus 323 RW~~G~~~q~~~~ 335 (727)
T PRK11234 323 RWIIGIVFQGFKT 335 (727)
T ss_pred HHHcccHHHHHHH
Confidence 99999 6888753
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=2.8e-24 Score=226.12 Aligned_cols=229 Identities=22% Similarity=0.341 Sum_probs=162.8
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~ 428 (1079)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| .+.-|++.+.+. .
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---V------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---H-------------------
Confidence 57999999998 85 678999999999999999999999998 555444432221 0
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCC
Q 001421 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~ 508 (1079)
.++..
T Consensus 54 ----------------------------~~~~~----------------------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYAA----------------------------------------------- 58 (232)
T ss_pred ----------------------------HHHhh-----------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001421 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~V 588 (1079)
.-+++.++.+.+++|+ |++|+|++++. +.++||+++|+|.+ +.|++|++.+.++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0135788888876665 99999999986 58999999999998 6999999977888888 79999
Q ss_pred ecCccccCCCccc--ccc-cchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCccc
Q 001421 589 QFPQRFDGIDRND--RYA-NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 665 (1079)
Q Consensus 589 Q~PQ~F~nid~~D--r~~-n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 665 (1079)
|....+.+.+.+- ++. -....+|.+.+.+.......+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 160 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFF---------------------------------------- 160 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeE----------------------------------------
Confidence 9987665543221 000 000011111111111110000
Q ss_pred CCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchH
Q 001421 666 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 745 (1079)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~ 745 (1079)
.-.|+...||+++++++||++.
T Consensus 161 -----------------------------------------------------~~~g~~~~~rr~~~~~vgg~~~----- 182 (232)
T cd06437 161 -----------------------------------------------------NFNGTAGVWRKECIEDAGGWNH----- 182 (232)
T ss_pred -----------------------------------------------------EeccchhhhhHHHHHHhCCCCC-----
Confidence 0014445677778888998764
Q ss_pred hHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccc
Q 001421 746 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (1079)
Q Consensus 746 ~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~ 825 (1079)
.++.||++++++|+.+||+++|++. . .++...|+|+.++++||+||++|.
T Consensus 183 ----------------------------~~~~ED~~l~~rl~~~G~~~~~~~~-~-~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 ----------------------------DTLTEDLDLSYRAQLKGWKFVYLDD-V-VVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ----------------------------CcchhhHHHHHHHHHCCCeEEEecc-c-eeeeeCCcCHHHHHHHHHHhccCC
Confidence 4678999999999999999999954 3 358999999999999999999984
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.91 E-value=7.3e-23 Score=214.95 Aligned_cols=173 Identities=27% Similarity=0.409 Sum_probs=121.4
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCC
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~ni 597 (1079)
+.++..++.+| .|+||+|.+++.+. .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 66666665445 49999999999742 46899999999986 7999999999998887 79999998765432
Q ss_pred Cccccccc----chhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccC
Q 001421 598 DRNDRYAN----RNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKG 673 (1079)
Q Consensus 598 d~~Dr~~n----~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1079)
.. ..+.- ....+|...+......+..+..
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 159 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQH---------------------------------------------- 159 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEe----------------------------------------------
Confidence 11 11100 0000111111111111111122
Q ss_pred CCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHH
Q 001421 674 SDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIH 753 (1079)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~ 753 (1079)
|+...||++++.++||++.
T Consensus 160 ------------------------------------------------g~~~~~rr~~~~~iGgf~~------------- 178 (236)
T cd06435 160 ------------------------------------------------GTMCLIRRSALDDVGGWDE------------- 178 (236)
T ss_pred ------------------------------------------------cceEEEEHHHHHHhCCCCC-------------
Confidence 3333556667778898754
Q ss_pred hcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccchhHhhh
Q 001421 754 VISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFS 831 (1079)
Q Consensus 754 V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl~~ 831 (1079)
....||++++++++.+||++.|++.. ..+...|.++.++++||.||++|++|++.+
T Consensus 179 --------------------~~~~eD~dl~~r~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 --------------------WCITEDSELGLRMHEAGYIGVYVAQS--YGHGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred --------------------ccccchHHHHHHHHHCCcEEEEcchh--hccCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 35789999999999999999999643 348999999999999999999999999974
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=7.8e-23 Score=217.34 Aligned_cols=231 Identities=25% Similarity=0.312 Sum_probs=164.1
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~ 428 (1079)
|.|.|+||+|| |+ ..+..|+.|+++++||.+++.++|.|||.++-|.+.+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999998 86 788999999999999988899999999987643332111
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCC
Q 001421 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~ 508 (1079)
+. . +
T Consensus 53 -------------------------------------~~-~----~---------------------------------- 56 (241)
T cd06427 53 -------------------------------------LR-L----P---------------------------------- 56 (241)
T ss_pred -------------------------------------hc-c----C----------------------------------
Confidence 00 0 0
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc--CCCCCceEE
Q 001421 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM--DPNLGKHVC 586 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~--DP~~g~~v~ 586 (1079)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..+++|.+++.+|. ++ +++
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~~~----~v~ 117 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARLDD----KLA 117 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhcCC----CEE
Confidence 001244444322 23599999999996 68999999999998 68999999999886 34 899
Q ss_pred EEecCccccCCCccc--c-cccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 001421 587 YVQFPQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (1079)
Q Consensus 587 ~VQ~PQ~F~nid~~D--r-~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 663 (1079)
+||.+..+++...+- + +......+|+..+++....+.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 160 (241)
T cd06427 118 CVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIP------------------------------------- 160 (241)
T ss_pred EEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeee-------------------------------------
Confidence 999988877543210 0 000011112222222211111110
Q ss_pred ccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCc
Q 001421 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~ 743 (1079)
..|+...|++++++++||+..
T Consensus 161 --------------------------------------------------------~~g~~~~~rr~~~~~vgg~~~--- 181 (241)
T cd06427 161 --------------------------------------------------------LGGTSNHFRTDVLRELGGWDP--- 181 (241)
T ss_pred --------------------------------------------------------cCCchHHhhHHHHHHcCCCCc---
Confidence 124445677788888998653
Q ss_pred hHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhc
Q 001421 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 744 ~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~ 823 (1079)
...+||++++++++.+||+++|+. .. ++...|+|++++++||.||++
T Consensus 182 ------------------------------~~~~eD~~l~~rl~~~G~r~~~~~-~~--~~~~~~~~~~~~~~q~~Rw~~ 228 (241)
T cd06427 182 ------------------------------FNVTEDADLGLRLARAGYRTGVLN-ST--TLEEANNALGNWIRQRSRWIK 228 (241)
T ss_pred ------------------------------ccchhhHHHHHHHHHCCceEEEec-cc--ccccCcHhHHHHHHHHHHHhc
Confidence 467899999999999999999994 32 378999999999999999999
Q ss_pred cchhHhhh
Q 001421 824 GSVEILFS 831 (1079)
Q Consensus 824 G~lQIl~~ 831 (1079)
|.+|++..
T Consensus 229 g~~~~~~~ 236 (241)
T cd06427 229 GYMQTWLV 236 (241)
T ss_pred cHHHHHHH
Confidence 99999964
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.88 E-value=6.5e-23 Score=213.86 Aligned_cols=224 Identities=30% Similarity=0.441 Sum_probs=133.7
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~ 428 (1079)
|.|.|+||++| |+ ..+..||.|+++++|| ++.++|+||+...-|.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 76 4999999999999995 5999999999875222111
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCC
Q 001421 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~ 508 (1079)
++++++ .|.
T Consensus 49 -----------------------------------~~~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR---YPR--------------------------------- 57 (228)
T ss_dssp -----------------------------------HHHHHT---TGG---------------------------------
T ss_pred -----------------------------------HHHHHH---cCC---------------------------------
Confidence 111110 000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001421 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~V 588 (1079)
-++.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0267777665321 23699999999997 56999999999997 5999999999988888 89999
Q ss_pred ecCccccCCCcccccccchhhhhhh----hccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 001421 589 QFPQRFDGIDRNDRYANRNTVFFDI----NLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (1079)
Q Consensus 589 Q~PQ~F~nid~~Dr~~n~~~vFfdi----~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~ 664 (1079)
|++..+++ +.+ .+......++.. ...+....+...+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 322 111111122111 1222233333444555555555544
Q ss_pred cCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCch
Q 001421 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (1079)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~ 744 (1079)
+++||+..
T Consensus 172 --------------------------------------------------------------------~~~g~fd~---- 179 (228)
T PF13641_consen 172 --------------------------------------------------------------------EEVGGFDP---- 179 (228)
T ss_dssp --------------------------------------------------------------------HHH-S--S----
T ss_pred --------------------------------------------------------------------HHhCCCCC----
Confidence 56777543
Q ss_pred HhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhcc
Q 001421 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 745 ~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G 824 (1079)
..+.||+++++++..+||+++|++. +.++...|.+++++++||.||++|
T Consensus 180 -----------------------------~~~~eD~~l~~r~~~~G~~~~~~~~--~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 -----------------------------FILGEDFDLCLRLRAAGWRIVYAPD--ALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp -----------------------------SSSSHHHHHHHHHHHTT--EEEEEE--EEEEE--SSSTHHHHHHHHHHH--
T ss_pred -----------------------------CCcccHHHHHHHHHHCCCcEEEECC--cEEEEeCCCCHHHHHHHHhccCcC
Confidence 4778999999999999999999954 335899999999999999999987
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.84 E-value=1.5e-19 Score=206.02 Aligned_cols=235 Identities=18% Similarity=0.213 Sum_probs=156.8
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001421 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 346 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRa 425 (1079)
...|+|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.++-|.+.+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34899999999999 875 5679999999999995 8899999987763322111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccC
Q 001421 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 505 (1079)
.+.+ +||.
T Consensus 90 ---------------------------------------~~~~------------------------~~p~--------- 97 (373)
T TIGR03472 90 ---------------------------------------RLRA------------------------DFPD--------- 97 (373)
T ss_pred ---------------------------------------HHHH------------------------hCCC---------
Confidence 1110 0110
Q ss_pred CCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceE
Q 001421 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHV 585 (1079)
Q Consensus 506 G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v 585 (1079)
.++.++.+.++.| .+.|++|+|++++. +.+|+|+.+|+|.+ +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1356664444333 45799999998875 68999999999997 6999999999999998 78
Q ss_pred EEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCccc
Q 001421 586 CYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 665 (1079)
Q Consensus 586 ~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 665 (1079)
+.|+.+.+..+ ... +.++... ...+.. ++-+. ... ...|-
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~------~~~~~~---~~~~~--~~~--~~~~~------------------------ 196 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGA------MGINHN---FLPSV--MVA--RALGR------------------------ 196 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHH------HHhhhh---hhHHH--HHH--HhccC------------------------
Confidence 99998644221 111 1111000 000000 00000 000 00000
Q ss_pred CCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchH
Q 001421 666 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 745 (1079)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~ 745 (1079)
..-..|++-.||+++++++||++..
T Consensus 197 ---------------------------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~---- 221 (373)
T TIGR03472 197 ---------------------------------------------------ARFCFGATMALRRATLEAIGGLAAL---- 221 (373)
T ss_pred ---------------------------------------------------CccccChhhheeHHHHHHcCChHHh----
Confidence 0001466778889999999997631
Q ss_pred hHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccc
Q 001421 746 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (1079)
Q Consensus 746 ~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~ 825 (1079)
..+++||++++.++..+||++.|.+.. ..+...|+|++++++||.||++..
T Consensus 222 ---------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~--v~~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 ---------------------------AHHLADDYWLGELVRALGLRVVLAPVV--VDTDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred ---------------------------cccchHHHHHHHHHHHcCCeEEecchh--hhcCCCccCHHHHHHHHHHHHhhh
Confidence 146789999999999999999998543 336778899999999999997543
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.83 E-value=1.8e-20 Score=201.07 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=46.7
Q ss_pred ccccchHHHHHHHHHCCCEEEE--ecCCCCcccccCCCCHHHHHHHHHHHhccchh
Q 001421 774 GSVTEDILTGFKMHARGWRSIY--CMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 827 (1079)
Q Consensus 774 gsVTED~~ts~rL~~rGWrsvY--~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQ 827 (1079)
.+++||++++++|..+||++.| ++. +.++.++|+|++++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~--a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPG--AVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecc--cEEEEECCCCHHHHHHHhHhhhccccc
Confidence 5799999999999999999999 754 345999999999999999999999864
No 29
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.83 E-value=1.7e-18 Score=210.02 Aligned_cols=171 Identities=20% Similarity=0.275 Sum_probs=124.1
Q ss_pred CchhhhhHHHHHhh---cccCCCCE--EEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCcc-ccCCCcc---cc
Q 001421 532 HKKAGAMNALVRVS---AVLTNGPF--LLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR-FDGIDRN---DR 602 (1079)
Q Consensus 532 h~KAGalNallrvS---av~tngp~--il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~-F~nid~~---Dr 602 (1079)
..||.|||.++... .-.+.++| |+++|||.+ ++|++|+. |-|+.+. + -+||.|-. ..|...+ .-
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHHH
Confidence 45999999988752 11234555 999999997 89999985 5666643 1 36998832 2221111 22
Q ss_pred cccchhhhhhhhccccccCCCccc-cccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCC
Q 001421 603 YANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSK 681 (1079)
Q Consensus 603 ~~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1079)
|+.+....|+..|+++..+.+++. -|||++|||.||--
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~----------------------------------------- 251 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA----------------------------------------- 251 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH-----------------------------------------
Confidence 666777778888999988888776 46899999988821
Q ss_pred CCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhccccccc
Q 001421 682 HVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYED 761 (1079)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~ 761 (1079)
+.+.||-.
T Consensus 252 --------------------------------------------------l~~~gg~~---------------------- 259 (703)
T PRK15489 252 --------------------------------------------------LMKERGNQ---------------------- 259 (703)
T ss_pred --------------------------------------------------HHHhcCCC----------------------
Confidence 11234311
Q ss_pred ccccccccCcccccccchHHHHHHHHHCCCEEEEecC---------------------CCCcccccCCCCHHHHHHHHHH
Q 001421 762 KTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP---------------------KRPAFKGSAPINLSDRLNQVLR 820 (1079)
Q Consensus 762 ~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p---------------------~~aaf~G~aPetl~a~lkQR~R 820 (1079)
+|..+++|||+++|+||+++|||+.|+.- ...++.+..|.|+.+.++||.|
T Consensus 260 --------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~R 331 (703)
T PRK15489 260 --------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKAR 331 (703)
T ss_pred --------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHH
Confidence 47789999999999999999999999321 1245678899999999999999
Q ss_pred Hhccch-hHhh
Q 001421 821 WALGSV-EILF 830 (1079)
Q Consensus 821 WA~G~l-QIl~ 830 (1079)
|..|-. |-..
T Consensus 332 W~~Gi~~q~~~ 342 (703)
T PRK15489 332 WVLGIAFQGWE 342 (703)
T ss_pred HHhHHHHhhHH
Confidence 999986 7754
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=5.4e-19 Score=182.88 Aligned_cols=226 Identities=17% Similarity=0.207 Sum_probs=152.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001421 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (1079)
Q Consensus 353 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~ 432 (1079)
|+||||| |+ ..+..||.|++..+||.+++.|+|.|||.+.-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 75 78999999999999999889999999998763222110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCCCCCC
Q 001421 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (1079)
Q Consensus 433 ~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~ 512 (1079)
|. . +
T Consensus 48 -----------------------~~--------~--~------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------A--A------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------H--h-------------------------------------------
Confidence 00 0 0
Q ss_pred CCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCc
Q 001421 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (1079)
Q Consensus 513 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ 592 (1079)
...+++.++.++. + .-..|+.++|.++.. ++++||+++|+|.+ +.|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555543 1 235689999999986 68999999999997 6899999999977665 577888888
Q ss_pred cccCCCcc-cccccchhhhhhhhccccccCCCc-cccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcC
Q 001421 593 RFDGIDRN-DRYANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (1079)
Q Consensus 593 ~F~nid~~-Dr~~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1079)
.+...+.. ..+..-...+......+.-+++.+ ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 155 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMC-------------------------------------------- 155 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcccc--------------------------------------------
Confidence 87622211 011100000000011111111111 11
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHH
Q 001421 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (1079)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~e 750 (1079)
.|.+..|+++++.++||++..
T Consensus 156 --------------------------------------------------~g~~~~~rr~~~~~~ggf~~~--------- 176 (229)
T cd04192 156 --------------------------------------------------NGANMAYRKEAFFEVGGFEGN--------- 176 (229)
T ss_pred --------------------------------------------------ccceEEEEHHHHHHhcCCccc---------
Confidence 133345666777788987641
Q ss_pred HHHhcccccccccccccccCcccccccchHHHHHHHHHCCC-EEEEecCCCCcccccCCCCHHHHHHHHHHHhcc
Q 001421 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGW-RSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 751 ai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGW-rsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G 824 (1079)
....+||.++.+++.++|| ++.|+......++...|.+++++++||+||++|
T Consensus 177 ----------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ----------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ----------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2467899999999999999 999875444445899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.79 E-value=1.8e-18 Score=178.41 Aligned_cols=124 Identities=20% Similarity=0.232 Sum_probs=100.1
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhh
Q 001421 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (1079)
Q Consensus 532 h~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFf 611 (1079)
..|++|+|++++. +.++|++++|+|.. ..|++|.+.+..+.+| +++.|+..
T Consensus 72 ~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~-------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLVTCL-------------------- 122 (196)
T ss_pred CHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeEEee--------------------
Confidence 3589999999986 68999999999997 6899999999988888 57777764
Q ss_pred hhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCcccc
Q 001421 612 DINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFS 691 (1079)
Q Consensus 612 di~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1079)
...|+++++||+++
T Consensus 123 -------------~~~g~~~~~r~~~~----------------------------------------------------- 136 (196)
T cd02520 123 -------------CAFGKSMALRREVL----------------------------------------------------- 136 (196)
T ss_pred -------------cccCceeeeEHHHH-----------------------------------------------------
Confidence 34566777777665
Q ss_pred chhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCc
Q 001421 692 LEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGW 771 (1079)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW 771 (1079)
+++||++.
T Consensus 137 -----------------------------------------~~~ggf~~------------------------------- 144 (196)
T cd02520 137 -----------------------------------------DAIGGFEA------------------------------- 144 (196)
T ss_pred -----------------------------------------HhccChHH-------------------------------
Confidence 34566532
Q ss_pred ccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhcc
Q 001421 772 IYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 772 ~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G 824 (1079)
....+.||+++++++..+||++.|+... .++...|.+++++++||.||++.
T Consensus 145 ~~~~~~eD~~l~~rl~~~G~~i~~~~~~--~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLGYRVVLSPYV--VMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred HhHHHHHHHHHHHHHHHcCCeEEEcchh--eeccCCcccHHHHHHHHHHHhcc
Confidence 0134689999999999999999999543 35899999999999999999874
No 32
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=2.4e-15 Score=172.34 Aligned_cols=215 Identities=20% Similarity=0.340 Sum_probs=154.3
Q ss_pred cEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecCcccc
Q 001421 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFD 595 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~v~~VQ~PQ~F~ 595 (1079)
++.|-.|.+ |...||||+-..+|..| +..+|+++||||.++ ..+.+-+.+..| .|| +.|++||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 477777776 66779999999999988 788999999999984 888998888887 688 788999975544
Q ss_pred CCCcccccccchhhhhhhhc-----------cccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 001421 596 GIDRNDRYANRNTVFFDINL-----------RGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (1079)
Q Consensus 596 nid~~Dr~~n~~~vFfdi~~-----------~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~ 664 (1079)
|. .|+|-++.| -|+..||+.
T Consensus 282 gg---------~TL~AR~qQFatrvYGpl~~~GLawW~~~---------------------------------------- 312 (736)
T COG2943 282 GG---------DTLYARCQQFATRVYGPLFTAGLAWWQLG---------------------------------------- 312 (736)
T ss_pred Cc---------chHHHHHHHHHHHHhchHHhhhhHHHhcc----------------------------------------
Confidence 43 345444444 233333321
Q ss_pred cCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCch
Q 001421 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (1079)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~ 744 (1079)
-.+++|++.+.|..++.|.-|.|.
T Consensus 313 ----------------------------------------------------Es~yWGHNAIIRt~aF~~hcgLp~---- 336 (736)
T COG2943 313 ----------------------------------------------------ESHYWGHNAIIRTKAFIEHCGLPP---- 336 (736)
T ss_pred ----------------------------------------------------ccccccccceeechhhHHhcCCCC----
Confidence 013456666666666555555543
Q ss_pred HhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhcc
Q 001421 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 745 ~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G 824 (1079)
...+-..|. ..++.|+.-+-.|.+.||.+--. +++...|++.|.|+-+++++-+||++|
T Consensus 337 --------------LpG~~pFgG------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC~G 395 (736)
T COG2943 337 --------------LPGRGPFGG------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWCHG 395 (736)
T ss_pred --------------CCCCCCCCc------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhhhc
Confidence 111222333 35789999999999999965444 667788999999999999999999999
Q ss_pred chhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001421 825 SVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVC 875 (1079)
Q Consensus 825 ~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllPil~ 875 (1079)
++|-+. ++. .++|.|..|+.++..++.|+++...++++++-.+.
T Consensus 396 NLqh~r-----l~~--~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~g~al 439 (736)
T COG2943 396 NLQHFR-----LFL--VKGLHWVSRAHFLTGVMSYLSAPLWFLFLLLGTAL 439 (736)
T ss_pred chhhce-----eec--cCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999874 332 68999999999999888777664444444444433
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.77 E-value=1.4e-17 Score=174.39 Aligned_cols=58 Identities=26% Similarity=0.169 Sum_probs=51.5
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCC
Q 001421 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 598 (1079)
Q Consensus 532 h~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid 598 (1079)
..|++|+|.+++. +.++||+++|+|.+ +.+++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 3499999999986 58999999999997 7999999999988888 899999998887764
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.74 E-value=6.9e-17 Score=171.32 Aligned_cols=127 Identities=27% Similarity=0.348 Sum_probs=97.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001421 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 424 (1079)
.+..|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||.++-|.+.+.
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~--------------------- 79 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR--------------------- 79 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH---------------------
Confidence 466889999999998 65 67899999999999998889999999998863222110
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceeccc
Q 001421 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 504 (1079)
++.+ +
T Consensus 80 ------------------------------~~~~----------~----------------------------------- 84 (251)
T cd06439 80 ------------------------------EYAD----------K----------------------------------- 84 (251)
T ss_pred ------------------------------HHhh----------C-----------------------------------
Confidence 0000 0
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCce
Q 001421 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (1079)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~ 584 (1079)
++.++..+++. .|++|+|.+++. .++++|+++|+|.+ +.+++|++.+..|.++ +
T Consensus 85 ------------~v~~i~~~~~~-----g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 85 ------------GVKLLRFPERR-----GKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ------------cEEEEEcCCCC-----ChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 14445444433 499999999996 57899999999998 5799999999998877 6
Q ss_pred EEEEecCccccCC
Q 001421 585 VCYVQFPQRFDGI 597 (1079)
Q Consensus 585 v~~VQ~PQ~F~ni 597 (1079)
+++|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8889987776543
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.74 E-value=2.4e-16 Score=180.64 Aligned_cols=133 Identities=23% Similarity=0.195 Sum_probs=93.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001421 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 424 (1079)
+...|+|.|+||++| |. ..+..++-|+++.|||. ++.|+|.|||.++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 467899999999999 76 67889999999999995 589999999998743332111
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceeccc
Q 001421 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 504 (1079)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccC-CCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCc
Q 001421 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT-NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 583 (1079)
Q Consensus 505 ~G~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~t-ngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~ 583 (1079)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+|+|+.+|+|.. +.|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01344554433332 23579999999998742111 2899999999997 6999999999998876
Q ss_pred eEEEEecC
Q 001421 584 HVCYVQFP 591 (1079)
Q Consensus 584 ~v~~VQ~P 591 (1079)
++++|...
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 34555543
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.66 E-value=5e-15 Score=155.23 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=61.2
Q ss_pred chHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecCCCCc
Q 001421 723 QSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPA 802 (1079)
Q Consensus 723 ~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aa 802 (1079)
....|+++++.++||++.. ....||.+++++++++|+++.|+... .
T Consensus 159 ~~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~-~- 204 (249)
T cd02525 159 HHGAYRREVFEKVGGFDES--------------------------------LVRNEDAELNYRLRKAGYKIWLSPDI-R- 204 (249)
T ss_pred ccceEEHHHHHHhCCCCcc--------------------------------cCccchhHHHHHHHHcCcEEEEcCCe-E-
Confidence 3345677788888987651 13469999999999999999999543 3
Q ss_pred ccccCCCCHHHHHHHHHHHhccchhHhhh
Q 001421 803 FKGSAPINLSDRLNQVLRWALGSVEILFS 831 (1079)
Q Consensus 803 f~G~aPetl~a~lkQR~RWA~G~lQIl~~ 831 (1079)
.....+.+++.+++|+.||+.|..|.+..
T Consensus 205 ~~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 205 VYYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred EEEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 36778899999999999999999999874
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.63 E-value=2.1e-15 Score=154.65 Aligned_cols=138 Identities=26% Similarity=0.369 Sum_probs=102.2
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhhhhhhc----cccccCCC-cccc
Q 001421 553 FLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINL----RGLDGIQG-PVYV 627 (1079)
Q Consensus 553 ~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~----~glDg~qg-p~yv 627 (1079)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+.++|.... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 6899999997 6899999999999888 8999999999863 34445555555553221 01111111 1233
Q ss_pred ccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchh
Q 001421 628 GTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDE 707 (1079)
Q Consensus 628 GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1079)
|+|.
T Consensus 74 G~~~---------------------------------------------------------------------------- 77 (193)
T PF13632_consen 74 GSGM---------------------------------------------------------------------------- 77 (193)
T ss_pred Ccce----------------------------------------------------------------------------
Confidence 4444
Q ss_pred hHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHH
Q 001421 708 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMH 787 (1079)
Q Consensus 708 ~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~ 787 (1079)
.+|+++++++||++. ..+++||+++++++.
T Consensus 78 ------------------~~r~~~l~~vg~~~~--------------------------------~~~~~ED~~l~~~l~ 107 (193)
T PF13632_consen 78 ------------------LFRREALREVGGFDD--------------------------------PFSIGEDMDLGFRLR 107 (193)
T ss_pred ------------------eeeHHHHHHhCcccc--------------------------------cccccchHHHHHHHH
Confidence 445555567776540 468999999999999
Q ss_pred HCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccc
Q 001421 788 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (1079)
Q Consensus 788 ~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~ 825 (1079)
++||++.|++.. .++.++|.|+.++++||+||..|.
T Consensus 108 ~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 108 RAGYRIVYVPDA--IVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred HCCCEEEEeccc--ceeeeCCCCHHHHHHHHHHHHhhh
Confidence 999999999643 358999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.51 E-value=1.2e-13 Score=142.74 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=80.2
Q ss_pred cEEEEEcccCCCCCcCchhhhhHHHHHhhc-------ccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEe
Q 001421 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSA-------VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ 589 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSa-------v~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ 589 (1079)
++.++.++.. + ....|++|+|++++.+. .-..+++|+++|+|.. +.|++|++++.+|.|| +++.||
T Consensus 51 ~v~~i~~~~~-~-~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLP-N-ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCC-c-CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 3666665421 1 22359999999998631 0113589999999997 7999999988899998 799999
Q ss_pred cCccccCCCccc--cc-ccchhhhhhhhccccccCCCccccccCchhhhhhh
Q 001421 590 FPQRFDGIDRND--RY-ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (1079)
Q Consensus 590 ~PQ~F~nid~~D--r~-~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 638 (1079)
.+.++.|.+.+- ++ ..+...++.+.+.++...+...+.|+|++|||++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 11 12223334455666665555557888888888877
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.42 E-value=8.9e-13 Score=134.61 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=46.9
Q ss_pred CchhhhhHHHHHhhc-ccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCC
Q 001421 532 HKKAGAMNALVRVSA-VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 598 (1079)
Q Consensus 532 h~KAGalNallrvSa-v~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid 598 (1079)
..|++|+|++++.+. .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+
T Consensus 62 ~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 62 RGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 459999999998641 1247999999999998 6899999999988653 24688877665543
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.39 E-value=7.9e-12 Score=127.82 Aligned_cols=122 Identities=21% Similarity=0.294 Sum_probs=88.7
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~ 428 (1079)
|.|.|+||||| |.+..+.+|+.|+++..|| .+.|+|.|||...-|.+.+.
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~------------------------- 50 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVL------------------------- 50 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHH-------------------------
Confidence 57999999998 6667889999999999998 46899999998652111110
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCC
Q 001421 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~ 508 (1079)
++| ..+
T Consensus 51 -------------------------~~~----------~~~--------------------------------------- 56 (202)
T cd04184 51 -------------------------KKY----------AAQ--------------------------------------- 56 (202)
T ss_pred -------------------------HHH----------Hhc---------------------------------------
Confidence 001 000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEE
Q 001421 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 587 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~v~~ 587 (1079)
.+++.++..+.+. .++.|+|.+++. +.++||+.+|+|.+ +.|++|.+.+-.| .+| ++++
T Consensus 57 ------~~~~~~~~~~~~~-----g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREENG-----GISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEcccCC-----CHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 0234555554433 479999999986 57899999999997 7999999999887 777 5667
Q ss_pred EecCccc
Q 001421 588 VQFPQRF 594 (1079)
Q Consensus 588 VQ~PQ~F 594 (1079)
|+.....
T Consensus 117 v~~~~~~ 123 (202)
T cd04184 117 IYSDEDK 123 (202)
T ss_pred EEccHHh
Confidence 7655443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.35 E-value=2.3e-11 Score=124.59 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=52.0
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCccccC
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~-DP~~g~~v~~VQ~PQ~F~n 596 (1079)
+.|+.+++..| +++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 56666665444 89999999986 68999999999997 68999999999884 56 6788887655443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.21 E-value=5e-11 Score=123.57 Aligned_cols=155 Identities=23% Similarity=0.298 Sum_probs=109.2
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccccccchhhh
Q 001421 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVF 610 (1079)
Q Consensus 531 hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~Dr~~n~~~vF 610 (1079)
-+.|..||-++++. . ...++|+++|+|+. .+|++|++.+..|.|| ++++|..+.++.+.+. -.+.-...|
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~--~~~~l~~~~ 84 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPARG--FWSRLEAAF 84 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCcC--HHHHHHHHH
Confidence 47899999999985 2 68999999999998 5899999999999999 7899988777555442 111111122
Q ss_pred hhhhcccc-c-cCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCc
Q 001421 611 FDINLRGL-D-GIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVP 688 (1079)
Q Consensus 611 fdi~~~gl-D-g~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1079)
+... ++. . .-..++.
T Consensus 85 ~~~~-~~~~~a~~~~~~~-------------------------------------------------------------- 101 (175)
T PF13506_consen 85 FNFL-PGVLQALGGAPFA-------------------------------------------------------------- 101 (175)
T ss_pred HhHH-HHHHHHhcCCCce--------------------------------------------------------------
Confidence 2100 000 0 0001111
Q ss_pred cccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccc
Q 001421 689 IFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSE 768 (1079)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGke 768 (1079)
+|.+..||+++|+++||+.. |
T Consensus 102 --------------------------------~G~~m~~rr~~L~~~GG~~~------------------------l--- 122 (175)
T PF13506_consen 102 --------------------------------WGGSMAFRREALEEIGGFEA------------------------L--- 122 (175)
T ss_pred --------------------------------ecceeeeEHHHHHHcccHHH------------------------H---
Confidence 35566777788888898643 1
Q ss_pred cCcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCC----CCHHHHHHHHHHHhc
Q 001421 769 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP----INLSDRLNQVLRWAL 823 (1079)
Q Consensus 769 vGW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aP----etl~a~lkQR~RWA~ 823 (1079)
.+.++||+.++-+++.+||++++.... +.....| .++.++++++.||++
T Consensus 123 ----~~~ladD~~l~~~~~~~G~~v~~~~~~--v~~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 123 ----ADYLADDYALGRRLRARGYRVVLSPYP--VVQTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred ----hhhhhHHHHHHHHHHHCCCeEEEcchh--eeecccCccccccHHHHHHHHHhhcC
Confidence 147999999999999999999999532 2245566 489999999999985
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.20 E-value=3.8e-10 Score=113.76 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=43.1
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCceEEEEecCccccC
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~-ff~DP~~g~~v~~VQ~PQ~F~n 596 (1079)
.+++|+|.+++. +.++||+++|+|.+ ..++.+.+.+. +..+| ++.+|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 389999999996 68999999999998 58899999984 55666 5666766554443
No 44
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.17 E-value=4e-09 Score=125.58 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=46.0
Q ss_pred cccchHHHHHHHHHC--CCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccchhHh
Q 001421 775 SVTEDILTGFKMHAR--GWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIL 829 (1079)
Q Consensus 775 sVTED~~ts~rL~~r--GWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~lQIl 829 (1079)
.+.||-.++..|.++ |||..|+..+. .+..+|++++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~--a~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAV--AYTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEccccc--ccccCCccHHHHHHHhhhccchhHhhH
Confidence 578999998878877 89999997654 389999999999999999999998554
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.13 E-value=1.1e-09 Score=112.35 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHh-hcCCCCCceEEEEecCcccc
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF-MMDPNLGKHVCYVQFPQRFD 595 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~f-f~DP~~g~~v~~VQ~PQ~F~ 595 (1079)
+.++..+++. .+++|+|.+++. ++|+||+++|+|.+ ..|+.|.+.+.. +.+| ..+++.....+.
T Consensus 56 ~~~~~~~~~~-----G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 56 IILIRNGKNL-----GVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred EEEEeCCCCc-----cHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 4455555433 489999999886 68999999999997 689999999987 5666 677787776544
No 46
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.11 E-value=3.2e-09 Score=117.34 Aligned_cols=110 Identities=22% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001421 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (1079)
Q Consensus 353 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaPe~yF~~ 432 (1079)
|+||||| |++..+..||.|+++..||.....|+|.|||.+.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 888999999999999999866678999999998643332111
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCCCCCCCC
Q 001421 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (1079)
Q Consensus 433 ~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G~~d~~~ 512 (1079)
+.. .
T Consensus 51 -------------------------~~~--------~------------------------------------------- 54 (299)
T cd02510 51 -------------------------EYY--------K------------------------------------------- 54 (299)
T ss_pred -------------------------HHH--------h-------------------------------------------
Confidence 000 0
Q ss_pred CCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CC
Q 001421 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 579 (1079)
Q Consensus 513 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~-DP 579 (1079)
+..|++.++..+++- .++.|.|.+++. +.|+||+.||+|.+ +.+++|.+.+-.+. +|
T Consensus 55 ~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~~~ 112 (299)
T cd02510 55 KYLPKVKVLRLKKRE-----GLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAENR 112 (299)
T ss_pred hcCCcEEEEEcCCCC-----CHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHhCC
Confidence 011346666665433 488999999996 68999999999998 58999999998774 44
No 47
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.05 E-value=4e-09 Score=103.30 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=40.9
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecC
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFP 591 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~v~~VQ~P 591 (1079)
.+++|+|.+++. .++++|+.+|+|.+ +.+++|.+.+-.+ .+| +++.|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 489999999996 48999999999998 6899999998755 445 66766655
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.04 E-value=6.5e-09 Score=104.66 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=36.6
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP 579 (1079)
.|++|+|.+++. ++|+||+.+|+|.. +.+++|++.+-++ ++
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 689999999986 68999999999997 6999999999887 54
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.04 E-value=6e-09 Score=108.13 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=34.7
Q ss_pred hhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001421 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 534 KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP 579 (1079)
|++|+|.+++. ..+++|+++|+|.+ +.+++|.+.+..+.++
T Consensus 60 ~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 60 RARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcC
Confidence 89999999886 56999999999998 6899999986666554
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.00 E-value=1.8e-10 Score=95.50 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=30.4
Q ss_pred ccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8889999999 999999999999999989999999999996
No 51
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.98 E-value=6.2e-09 Score=100.73 Aligned_cols=63 Identities=35% Similarity=0.468 Sum_probs=47.7
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH-HhhcCCCCCceEEEEecCccc
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM-CFMMDPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am-~ff~DP~~g~~v~~VQ~PQ~F 594 (1079)
++|+..++..| |+.|+|.+++. .++++|+++|+|.+ ..+++|.+.+ .++.++ +++.|...+..
T Consensus 55 ~~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 45555555444 99999999997 48999999999997 5899999994 455666 56666655443
No 52
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.96 E-value=2e-08 Score=107.63 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=46.1
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecC
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~P 591 (1079)
+.++.+++..| |++|+|++++. +.|+||+.+|+|.. .+|++|.+.+..+.++ +..+|...
T Consensus 70 v~~~~~~~n~G-----~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGKLG-----LGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 55555554333 89999999986 68999999999997 7999999999888665 34555543
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.94 E-value=8.7e-09 Score=108.28 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=45.8
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH---Hhh-cCCCCCceEEEEecCcc
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM---CFM-MDPNLGKHVCYVQFPQR 593 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am---~ff-~DP~~g~~v~~VQ~PQ~ 593 (1079)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++ -.+ .+| .++.+ .|+.
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 66777665444 99999999986321 25699999999998 6899999985 333 345 55544 4544
Q ss_pred c
Q 001421 594 F 594 (1079)
Q Consensus 594 F 594 (1079)
.
T Consensus 117 ~ 117 (237)
T cd02526 117 I 117 (237)
T ss_pred E
Confidence 3
No 54
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.93 E-value=2e-08 Score=105.30 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=35.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 001421 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (1079)
Q Consensus 353 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt 398 (1079)
|+||+|| + ...+..|+-|+++.+|| +.+.++|.|||...-|
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 6899998 5 47999999999999999 4689999999987643
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.92 E-value=4.2e-08 Score=102.10 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=46.8
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecC
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~P 591 (1079)
+.++..+++.| |++|+|.+++. +.|+||+.+|+|.. ..|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 45555555444 89999999997 57899999999987 6999999999987766 34555554
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.91 E-value=1.9e-09 Score=104.63 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=75.7
Q ss_pred cEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001421 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~n 596 (1079)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.++. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 489999987 33 699999999997 68899999999998 57789999999998731 14444444444333
Q ss_pred CCcccccc--cchhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001421 597 IDRNDRYA--NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 597 id~~Dr~~--n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
........ .....++............+.++|.++++||++|-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 22222211 12234444455556677788999999999999883
No 57
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.90 E-value=2.4e-08 Score=102.78 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.0
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~V 588 (1079)
+.|+.-++.. ..+.++|.++..+- ...++|++.+|+|.+ +.+++|++.+-.+.+| +++.|
T Consensus 53 i~~~~~~~n~-----g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~ 112 (202)
T cd04185 53 IVYLRLPENL-----GGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL 112 (202)
T ss_pred eEEEECcccc-----chhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe
Confidence 4555555432 37888898887532 457899999999997 6899999999888777 55555
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.63 E-value=4.1e-07 Score=94.83 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=45.3
Q ss_pred EEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCc
Q 001421 519 VYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (1079)
Q Consensus 519 vYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ 592 (1079)
.++..++..| |++|+|.+++. +.|+||+.+|+|.. ..+++|.+.+..+.++ ....|....
T Consensus 60 ~~i~~~~n~G-----~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r 119 (211)
T cd04188 60 RVLTLPKNRG-----KGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSR 119 (211)
T ss_pred EEEEcccCCC-----cHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEe
Confidence 4555544333 89999999997 57899999999997 7999999999887654 234455443
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.61 E-value=7.4e-07 Score=101.10 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=82.4
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001421 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (1079)
Q Consensus 347 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepRaP 426 (1079)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.|+|.|||.++-|.+-+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~------------------------ 53 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIA------------------------ 53 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHH------------------------
Confidence 3578999999998 54 6889999999999997 5789999999886322211
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHhHhhhccCCcccccccCCCCCCCCCCCCCccccceecccCC
Q 001421 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (1079)
Q Consensus 427 e~yF~~~~d~~~~~~~~~fv~err~mkreyee~k~ri~~L~~~~~~~p~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~G 506 (1079)
++|.+
T Consensus 54 ---------------------------~~~~~------------------------------------------------ 58 (328)
T PRK10073 54 ---------------------------KHYAE------------------------------------------------ 58 (328)
T ss_pred ---------------------------HHHHh------------------------------------------------
Confidence 11110
Q ss_pred CCCCCCCCCCcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001421 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 507 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP 579 (1079)
+.|++.++..+ . ...++|.|.++.. +.|+||+.+|+|-+ ..|++|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~-n-----~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA-N-----AGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC-C-----CChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01245566432 2 2489999999996 69999999999998 5899999999877644
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.58 E-value=4e-07 Score=91.82 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=50.7
Q ss_pred EEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001421 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~n 596 (1079)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+..+..+ +..+|+.+..+.+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45666666555 99999999986 67899999999997 6999999999886654 4567777765544
No 61
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.56 E-value=2.1e-06 Score=95.62 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=43.3
Q ss_pred CcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001421 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~D 578 (1079)
|++.|+..++..| ++.|+|.++.. ++|+||+.+|+|.+ ..|+.|.+.+-++..
T Consensus 60 ~ri~~i~~~~n~G-----~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 60 PRITYIHNDINSG-----ACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCEEEEECCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 3578887665444 89999999986 68999999999998 589999998887643
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.54 E-value=1.9e-06 Score=94.37 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=49.7
Q ss_pred cEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccc
Q 001421 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F 594 (1079)
++.|+.-++.-| .|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 467777655444 799999999863 1237899999999998 6799999999887542 12677776 4433
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.45 E-value=6.2e-06 Score=90.05 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=36.0
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhh
Q 001421 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~-DYP~~kl~~yvsDDG~~~ltf 399 (1079)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||.++-|.
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~ 48 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTR 48 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHH
Confidence 56899999998 64 5689999999864 233346899999999987433
No 64
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.42 E-value=3.4e-06 Score=104.45 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=45.2
Q ss_pred cccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhccch
Q 001421 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSV 826 (1079)
Q Consensus 775 sVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~G~l 826 (1079)
+..||-.+..++..+||++-|+.... ...++|+++.+++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~--a~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASD--AETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecccc--ccccCcHhHHHHHHHhhhhcccch
Confidence 48999999999999999999997543 389999999999999999999943
No 65
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.38 E-value=6.6e-06 Score=77.73 Aligned_cols=51 Identities=27% Similarity=0.337 Sum_probs=41.1
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCceEEEEecC
Q 001421 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFP 591 (1079)
Q Consensus 532 h~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~-ff~DP~~g~~v~~VQ~P 591 (1079)
..|++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +..+|+.+
T Consensus 63 ~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 63 QGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 3499999999987 47999999999997 68889988744 45565 67778776
No 66
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.33 E-value=3.9e-06 Score=85.14 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=63.2
Q ss_pred cEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001421 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~n 596 (1079)
++.|+..++.. .|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++. .++.+..-.. .+
T Consensus 56 ~i~~i~~~~n~-----G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSRNF-----GQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecCCC-----CcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc
Confidence 35666555433 499999999986 57899999999997 689999999987 4432 2444433222 12
Q ss_pred CCc-ccccccchhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001421 597 IDR-NDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 597 id~-~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
+. ..++.+ ..++. ....+.+..-+...|+..++||+++-
T Consensus 121 -~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 -ESWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred -chHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 111111 11111 11222334445666777899999995
No 67
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.27 E-value=2.1e-05 Score=87.16 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=45.4
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcc
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRN 600 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~VQ~PQ~F~nid~~ 600 (1079)
.+|.|.|.++.. +++++|+.+|+|.+ +.|++|.+++-+.+.=.. ..-+++-.|..|.+.+..
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~~-~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLDK-NPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHhc-CCCceEEEeeeeccchhh
Confidence 699999999986 69999999999997 689999999983211000 124566667777655433
No 68
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.27 E-value=2.6e-05 Score=87.27 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=52.1
Q ss_pred CcEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCC-EEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecCcc
Q 001421 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP-FLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQR 593 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp-~il~lDcDh~i~~~~~Lr~am~ff-~DP~~g~~v~~VQ~PQ~ 593 (1079)
|.+.|+.-.+.-|| ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+ .+| .+++|+.-.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 45777777666776 89999888763 35554 9999999975 7999999999766 556 6788887766
Q ss_pred ccC
Q 001421 594 FDG 596 (1079)
Q Consensus 594 F~n 596 (1079)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 543
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.16 E-value=3.9e-05 Score=87.47 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=35.3
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~D 578 (1079)
.|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 499999999986 57999999999997 688998888877653
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.03 E-value=3.1e-05 Score=87.43 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=42.1
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEec
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQF 590 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~-DP~~g~~v~~VQ~ 590 (1079)
.|++|+|.+++. ++|++|+.+|+|....+|++|.+.+..+. || ++.+|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 499999999986 68999999999985368999999998775 77 5677764
No 71
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.38 E-value=0.0039 Score=71.47 Aligned_cols=159 Identities=26% Similarity=0.388 Sum_probs=110.9
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE-ecCccccCCCcccccccchhh
Q 001421 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV-QFPQRFDGIDRNDRYANRNTV 609 (1079)
Q Consensus 531 hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~V-Q~PQ~F~nid~~Dr~~n~~~v 609 (1079)
-+.|-.||=-+.|. ...|+|++.|.|-. -.|+.+....-=||.|+ ++|+| |+|-.++---
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 45687787778886 68899999999988 49999998888888775 89988 7886654211
Q ss_pred hhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCcc
Q 001421 610 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPI 689 (1079)
Q Consensus 610 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1079)
||.- -..+|-||. +-|--|-|- |-.-.|
T Consensus 216 -f~at-------le~~~fgTs--h~r~yl~~n-------------~~~~~c----------------------------- 243 (431)
T KOG2547|consen 216 -FDAT-------LEQVYFGTS--HPRIYLSGN-------------VLGFNC----------------------------- 243 (431)
T ss_pred -chhh-------hhheeeccC--CceEEEccc-------------cccccc-----------------------------
Confidence 1111 112566664 333333110 000000
Q ss_pred ccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhccccccccccccccc
Q 001421 690 FSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEI 769 (1079)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkev 769 (1079)
.=|-|...|+++++|.||+...
T Consensus 244 ------------------------------~tgms~~mrK~~ld~~ggi~~f---------------------------- 265 (431)
T KOG2547|consen 244 ------------------------------STGMSSMMRKEALDECGGISAF---------------------------- 265 (431)
T ss_pred ------------------------------cccHHHHHHHHHHHHhccHHHH----------------------------
Confidence 0156778999999999996542
Q ss_pred CcccccccchHHHHHHHHHCCCEEEEecCCCCcccccCCCCHHHHHHHHHHHhc
Q 001421 770 GWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 770 GW~~gsVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aPetl~a~lkQR~RWA~ 823 (1079)
| +.+.||+..+-.+..+||++.+.... +-...+-.+...+..|-.||..
T Consensus 266 ~---~yLaedyFaaksllSRG~ksaist~p--alQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 266 G---GYLAEDYFAAKSLLSRGWKSAISTHP--ALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred H---HHHHHHHHHHHHHHhhhhhhhhcccc--hhhhhhhhHHHHHHHHHHHhhh
Confidence 1 48999999999999999999999643 2256677888889888899976
No 72
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.35 E-value=0.0016 Score=74.10 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=35.5
Q ss_pred chhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc
Q 001421 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (1079)
Q Consensus 533 ~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~ 577 (1079)
.|++|+|++++. +.|++++.+|||.. ..|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 489999999986 68999999999997 79999999988764
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.006 Score=58.40 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=39.0
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 001421 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (1079)
Q Consensus 348 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l 397 (1079)
.|.|.|+||||| |+ .....+|-|++...|+. ..+.|.|||.+.-
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~ 45 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDG 45 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCC
Confidence 578999999998 55 89999999999999996 5599999999873
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.97 E-value=0.0062 Score=65.17 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=35.6
Q ss_pred hhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001421 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 534 KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~DP 579 (1079)
.+.+.|.++.. ..+++|+.+|+|.+ ..++.+.+...++.++
T Consensus 59 ~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 59 FGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred hHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 78999999985 67899999999998 6999999998888654
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.70 E-value=0.00078 Score=75.49 Aligned_cols=48 Identities=31% Similarity=0.946 Sum_probs=43.7
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
.|..|=+.+..+ ..-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999998776 3459999 99999999999999999999999999999
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.82 E-value=0.0095 Score=67.47 Aligned_cols=61 Identities=25% Similarity=0.522 Sum_probs=53.2
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAI 78 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv 78 (1079)
..+.|.+|-.+..++.+=.++|. +||-..|+.|.+---+.|...||+|++..++.+=.|.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 45799999999999988888988 99999999999887788999999999999887544544
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.13 E-value=0.23 Score=57.41 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=34.6
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001421 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 352 DvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
-|+|.||| - |.-+..|+-|+++..+-.+...+||++||...
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888997 4 69999999999998755567889999999875
No 78
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.05 E-value=0.015 Score=50.03 Aligned_cols=46 Identities=35% Similarity=0.884 Sum_probs=37.0
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCC--Ccccc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRY 69 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPq--Ckt~Y 69 (1079)
.+..|.+||+.+ .+|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~---~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKF---KDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcc---cCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 356899999998 357889999999999999999764 44555 66665
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=91.50 E-value=2.3 Score=54.20 Aligned_cols=74 Identities=27% Similarity=0.375 Sum_probs=49.6
Q ss_pred cccchHHHHHHHHHCCCEEEEecCCCCcccccCC-CCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccchhhh
Q 001421 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP-INLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYV 853 (1079)
Q Consensus 775 sVTED~~ts~rL~~rGWrsvY~~p~~aaf~G~aP-etl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL~Yl 853 (1079)
.++||+..|+....||-++.++. -.. .|..- ..+..-..=-..-+.|+=+..++|.--. ++.+|.+.+-|++.
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~e-y~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yr---Lg~~ld~~R~LSfy 482 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHCE-YIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREYYR---LGTRLDFFRFLSFY 482 (817)
T ss_pred cccHHHHHHHHHHhcCCceeehh-hhh--cccccccCchhhhhhHhHhcCCccchhhhHHHHH---hhccCCHHHHHHHH
Confidence 79999999999999999999993 333 24332 1233333334677899988887764222 25678877666644
Q ss_pred h
Q 001421 854 N 854 (1079)
Q Consensus 854 ~ 854 (1079)
.
T Consensus 483 y 483 (817)
T PF02364_consen 483 Y 483 (817)
T ss_pred h
Confidence 3
No 80
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.27 E-value=0.38 Score=37.56 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=33.2
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.|.||.+.. .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998887 22322 335899999999987666678899999975
No 81
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=89.13 E-value=2.2 Score=45.84 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=37.9
Q ss_pred cEEEEEcccCCCCCcCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001421 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff~D 578 (1079)
++.-..|.+.-|. .-|.-+++.. ..|+|+++.|||-- -.|+++-+.+....+
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 5777788875442 2234445554 68999999999985 899999998776655
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.49 E-value=0.3 Score=49.30 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=38.9
Q ss_pred CcccccCCCcccCCCCCceecCCC-CCCCcchhhHHHHHh--hCCCCCCCCcccccccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDV-CAFPVCRPCYEYERK--DGNQSCPQCKTRYKKHK 73 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~e-C~fpvCr~Cyeyerk--eG~~~CPqCkt~Ykr~k 73 (1079)
--|.||.|.= .-|-|.-=|| |||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~etS----~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETS----AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCccccc----chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4699998741 2334665556 499999999976666 45589999999998753
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=85.37 E-value=0.99 Score=38.82 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.0
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
+|.||++-+ .+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 699999974 22 433 378999999999877766 67899999877
No 84
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=79.19 E-value=2.7 Score=45.32 Aligned_cols=64 Identities=31% Similarity=0.652 Sum_probs=42.3
Q ss_pred CCCCCCCCCcc-ccccCCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHH---------------hhCCCCCCC
Q 001421 1 MESEGETGVKS-IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---------------KDGNQSCPQ 64 (1079)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer---------------keG~~~CPq 64 (1079)
||-+.++..+. +...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +.+...||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv 73 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC
Confidence 56665555544 44445569999999752 3444 2689999999996321 113468999
Q ss_pred Ccccccc
Q 001421 65 CKTRYKK 71 (1079)
Q Consensus 65 Ckt~Ykr 71 (1079)
|++....
T Consensus 74 CR~~Is~ 80 (193)
T PLN03208 74 CKSDVSE 80 (193)
T ss_pred CCCcCCh
Confidence 9998843
No 85
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=76.83 E-value=1.1 Score=56.15 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=21.2
Q ss_pred CCCCCCC----cchhhHHHHHhhCCCCCCCCcccccc
Q 001421 39 CDVCAFP----VCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 39 C~eC~fp----vCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
|.+||-+ .|.-|- .+..+|..-||+|+++-..
T Consensus 18 C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 18 CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred ccccCCCCCCCcCCCCC-CCCCcccccccccCCcccc
Confidence 5555444 355554 4567888999999988653
No 86
>PHA02929 N1R/p28-like protein; Provisional
Probab=76.51 E-value=3.1 Score=46.26 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=39.7
Q ss_pred cCCCcccccCCCcccCC-CCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001421 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
.....|.||.+.+..++ ....+..=..|+-.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 44679999999875433 112233344789999999995 45567899999999875
No 87
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=75.88 E-value=2.7 Score=43.92 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=34.7
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCC---CcchhhHHHH-HhhCCCCCCCCccccccc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYE-RKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeye-rkeG~~~CPqCkt~Ykr~ 72 (1079)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-= ...|+..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 345999997762 2344588 5532 3356787654 345789999999999654
No 88
>PHA02862 5L protein; Provisional
Probab=74.78 E-value=1.9 Score=44.39 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=32.0
Q ss_pred CCcccccCCCcccCCCCCceecCCCC---CCCcchhhHHHH-HhhCCCCCCCCcccccc
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYEYE-RKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC---~fpvCr~Cyeye-rkeG~~~CPqCkt~Ykr 71 (1079)
+.+|.||-++- +|..-+| .| -==|=+.|.+-= ...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899998862 3445777 44 112335565322 44788999999999954
No 89
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=74.42 E-value=2 Score=34.88 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.4
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCk 66 (1079)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||.|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999855 67777775 9999999998654444 57999996
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.86 E-value=1.9 Score=37.56 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=34.4
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
.-|.|-.||..-.+ ..+.+ ||=-||+-|+.-||-.| ||=|.||+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34567777765222 12344 59999999999999887 99999999654
No 91
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=68.68 E-value=29 Score=39.76 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=31.3
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC---CCcEEEEecCCCchhhhH
Q 001421 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV---DKVSCYVSDDGAAMLTFE 400 (1079)
Q Consensus 350 ~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~---~kl~~yvsDDG~~~ltf~ 400 (1079)
..-|+||.||-.+-=+.+.-.|+-. |.-.|-. =...+.|+|||...-|.+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~ 120 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVE 120 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHH
Confidence 6789999999222223444444433 3334443 256789999999985554
No 92
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=66.99 E-value=3.3 Score=34.51 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.1
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCCc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
-+|.-||.++.++.. .-+-|.+||+.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888733 348899999876
No 93
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=66.66 E-value=5.2 Score=29.84 Aligned_cols=39 Identities=38% Similarity=0.944 Sum_probs=27.7
Q ss_pred ccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCC
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqC 65 (1079)
|.||.+.. ..+.+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77887771 12222 25888899999976666677889987
No 94
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=66.20 E-value=4.2 Score=31.81 Aligned_cols=26 Identities=27% Similarity=0.755 Sum_probs=18.9
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
+|.-||.++.+.. ++ -|-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999998664 33 37999999865
No 95
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.62 E-value=4.1 Score=44.85 Aligned_cols=44 Identities=34% Similarity=0.879 Sum_probs=37.5
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCCcchhhHHHH---HhhCCCCCCCCcccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRY 69 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye---rkeG~~~CPqCkt~Y 69 (1079)
--|.||=|.+ =|+.|-| ||---|.||. |- ....++.||=||..-
T Consensus 48 FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 48 FDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred eeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCcccccc
Confidence 4799998876 5688888 9999999998 76 568899999999865
No 96
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=62.84 E-value=25 Score=38.32 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=36.6
Q ss_pred CchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCC
Q 001421 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPN 580 (1079)
Q Consensus 532 h~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am~ff-~DP~ 580 (1079)
..-|-+.|++++. +.++|++.+.=|-.+.+++++.+.+-.| .||+
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 3468899999986 7999999999999999999999999988 9994
No 97
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=5.6 Score=45.11 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=43.5
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+-|.+|--++-++.+ ++.-=|+|+.+.|-.|..---.-|...||.|.+.-++.
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888777755 55555699999999999777778999999999988765
No 98
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.76 E-value=5.8 Score=45.78 Aligned_cols=52 Identities=29% Similarity=0.860 Sum_probs=43.1
Q ss_pred CCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
...|.||++.. +.+--.|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 46899999985 4445579999 99999999998 34568999999999999764
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=61.62 E-value=5 Score=45.77 Aligned_cols=45 Identities=33% Similarity=0.817 Sum_probs=37.6
Q ss_pred CCCCCceecCCCCCCCc--------ch--hhHHHHHhhCCCCCCCCccccccccC
Q 001421 30 TVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKHKG 74 (1079)
Q Consensus 30 ~~~G~~fvaC~eC~fpv--------Cr--~CyeyerkeG~~~CPqCkt~Ykr~kg 74 (1079)
..+|+..--|.-|+||| |+ .|||-.|.|-.+.||.|-.|-.|..-
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 34567677799999998 54 69999999999999999999988743
No 100
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=61.54 E-value=6.8 Score=31.07 Aligned_cols=39 Identities=36% Similarity=0.922 Sum_probs=28.0
Q ss_pred ccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCC
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqC 65 (1079)
|.||-|... ++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~-----~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-----DPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-----SEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc-----CcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 788877642 254444 78999999999777666 7999988
No 101
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=61.06 E-value=1.3 Score=39.76 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.1
Q ss_pred hhhHHHHHhhCCCCCCCCccccccc
Q 001421 48 RPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 48 r~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 4577788999999999999999544
No 102
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=60.85 E-value=44 Score=36.14 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc-CCCCCch
Q 001421 981 PTTLLVINLVGVVAGVSYAINSGYQSWGP--LFGKLFFAFWVIVHLYPFLKGLMG-RQNRTPT 1040 (1079)
Q Consensus 981 ~~~Llilnligiv~gi~r~i~~~~~~w~~--l~g~l~~~~Wvv~nL~p~l~gL~g-R~~r~p~ 1040 (1079)
=..|+++.+++++-|+.-+++...+..|- +....+..++++|.+|-|+--+.| |..|.++
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 44578888999999998888654433332 334456667888888877665555 4567777
No 103
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=7.1 Score=44.67 Aligned_cols=66 Identities=30% Similarity=0.739 Sum_probs=47.9
Q ss_pred ccccCCCcccc--cCCCcccCCCCCceecCCC-CCCCcchhhHH-----------------------HH-----------
Q 001421 12 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YE----------- 54 (1079)
Q Consensus 12 ~~~~~~~~Cqi--Cgd~vg~~~~G~~fvaC~e-C~fpvCr~Cye-----------------------ye----------- 54 (1079)
+.++.|-.|.- ||..+-...| +--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45667888986 9987655543 33588977 99999999998 33
Q ss_pred ----HhhCCCCCCCCccccccccCCCcc
Q 001421 55 ----RKDGNQSCPQCKTRYKKHKGSPAI 78 (1079)
Q Consensus 55 ----rkeG~~~CPqCkt~Ykr~kgsprv 78 (1079)
.|-.++-||.|.++-.|.-|+--+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGCmHm 416 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGCMHM 416 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCceEEe
Confidence 233567799999998887776433
No 104
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=58.58 E-value=6.7 Score=31.05 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.4
Q ss_pred ccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHh-hCCCCCCCC
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 65 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-eG~~~CPqC 65 (1079)
|.||.+...... -=.+|+=..|+.|.+--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888753322 2347899999999987766 788899988
No 105
>PRK00420 hypothetical protein; Validated
Probab=56.69 E-value=4.6 Score=40.10 Aligned_cols=29 Identities=38% Similarity=0.757 Sum_probs=23.0
Q ss_pred ecCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001421 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888873 338999999999998854
No 106
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=55.05 E-value=9.5 Score=45.75 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.6
Q ss_pred CceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001421 34 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 34 ~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+.-++|++|+.-+ ..+...||+|+++-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 4478899999864 23456899999988655
No 107
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.28 E-value=9.8 Score=31.75 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=32.4
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCC-cchhhHHHHHhhCCCCCCCCcccccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
..|.||.++.-. -.+.+ |+=- +|..|.+--++ .+..||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 23444 5777 99999976666 77999999998753
No 108
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=52.43 E-value=1.7 Score=42.94 Aligned_cols=47 Identities=32% Similarity=0.746 Sum_probs=33.7
Q ss_pred CCCcccccCCCcccCC-CCCceecCCCCCCCcchhhHHHHHhhCCCCCCCC
Q 001421 16 GGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqC 65 (1079)
+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 6679999999987763 35 88999999999999988444444455444
No 109
>PHA02926 zinc finger-like protein; Provisional
Probab=52.30 E-value=16 Score=40.30 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=42.9
Q ss_pred ccCCCcccccCCCcccC--CCCCceecCCCCCCCcchhhHHHHHhh-----CCCCCCCCccccccccCC
Q 001421 14 NVGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerke-----G~~~CPqCkt~Ykr~kgs 75 (1079)
......|.||=+.|-.. ++...|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 34457999999997543 222223333467889999999776653 346799999999876544
No 110
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=50.98 E-value=8.6 Score=33.01 Aligned_cols=28 Identities=25% Similarity=0.758 Sum_probs=17.8
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHH
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE 52 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye 52 (1079)
.|.|||+++|+... .-+. =+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~~---DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIK---DGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eecc---Ccc-chHHHHH
Confidence 59999999998642 1111 123 6777773
No 112
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.80 E-value=11 Score=33.48 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=25.0
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchh
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 49 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~ 49 (1079)
.+|+|..||.....+.++..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 6889999999987755666554 87898876554
No 113
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=50.59 E-value=12 Score=30.79 Aligned_cols=37 Identities=27% Similarity=0.871 Sum_probs=28.3
Q ss_pred CCcccccCCCcccCCCCCceecCCCC-CCCcchhhHHHHHhhC
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 58 (1079)
...|..|+..+ .|.-| .|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999854 36656 79999 9999999997554444
No 114
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.56 E-value=54 Score=39.06 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=36.9
Q ss_pred CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCC
Q 001421 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGA 394 (1079)
Q Consensus 344 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~ 394 (1079)
.+.+||++.|+|.-.| |--..+++||-|++.-.=|.=--.|.+.||=.
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 4689999999999998 99999999999998754332233466677743
No 115
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.70 E-value=11 Score=45.02 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=20.7
Q ss_pred ceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001421 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 35 ~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999866 1 23346799999886443
No 116
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=47.93 E-value=6.1 Score=45.17 Aligned_cols=36 Identities=28% Similarity=0.806 Sum_probs=27.1
Q ss_pred cccccCCCcccCCCCCceecCCCC-CCCcchhhHHHHHhhC
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 58 (1079)
-|.+|--++- .-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876642 3469999999 9999999995444444
No 117
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.16 E-value=13 Score=48.42 Aligned_cols=45 Identities=22% Similarity=0.677 Sum_probs=32.5
Q ss_pred cCCCcccccCCCcccCCCCCceecCCCCCC-----CcchhhHHHHHhhC-CCCCCCCccccc
Q 001421 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAF-----PVCRPCYEYERKDG-NQSCPQCKTRYK 70 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~f-----pvCr~CyeyerkeG-~~~CPqCkt~Yk 70 (1079)
.....|.-||-.. ....|.+||= -.|..| ++.+ .-.||.|++.=.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4456899999883 4568999984 368888 4433 367999997654
No 118
>PRK12495 hypothetical protein; Provisional
Probab=46.97 E-value=10 Score=41.68 Aligned_cols=29 Identities=34% Similarity=0.867 Sum_probs=21.8
Q ss_pred eecCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001421 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 36 fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 345667777764 45999999999999864
No 119
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.07 E-value=14 Score=30.56 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=15.9
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
.|+-||..+..+++.. -+-|..||.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5777777766665443 34555555543
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=42.45 E-value=9.8 Score=43.99 Aligned_cols=31 Identities=29% Similarity=0.928 Sum_probs=26.0
Q ss_pred CCCcchhhHHHHHhhCC--CCCCCCcccccccc
Q 001421 43 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKHK 73 (1079)
Q Consensus 43 ~fpvCr~CyeyerkeG~--~~CPqCkt~Ykr~k 73 (1079)
+|.|||.|+---|-+-+ +-||-|.++||..|
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~k 33 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEK 33 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhh
Confidence 57899999977777666 99999999997653
No 121
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=42.25 E-value=8.2 Score=41.03 Aligned_cols=35 Identities=29% Similarity=0.850 Sum_probs=25.7
Q ss_pred ccccCCCcccCCCCCceecCCCCCCCc-chh--------------hHHHHHhhCC
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAFPV-CRP--------------CYEYERKDGN 59 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpv-Cr~--------------CyeyerkeG~ 59 (1079)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999875 2344578899999999 654 77 7766654
No 122
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.67 E-value=21 Score=42.67 Aligned_cols=45 Identities=24% Similarity=0.680 Sum_probs=33.2
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
-.|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 27 l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 27 LRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred cCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 58999998651 2333 368999999999754433 458999999874
No 123
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=41.61 E-value=15 Score=37.16 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=36.9
Q ss_pred ccCCCcccccCCCccc--CCCCCceecCCCCCCCcchhhHHH---HHhhCCCCCCCCcc
Q 001421 14 NVGGQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~--~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CPqCkt 67 (1079)
....+.|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3568899999999655 4568 999994 6999996 221 12256689999997
No 124
>PRK07220 DNA topoisomerase I; Validated
Probab=41.06 E-value=12 Score=47.92 Aligned_cols=48 Identities=19% Similarity=0.599 Sum_probs=32.3
Q ss_pred CcccccCCCccc--CCCCCceecCCCCCCCcchhhHHHHHh----hCCCCCCCCcc
Q 001421 18 QVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 67 (1079)
Q Consensus 18 ~~CqiCgd~vg~--~~~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CPqCkt 67 (1079)
..|..||.++.. ...|..|..|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 489999977543 23466799996 67888755533321 13578999985
No 125
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=39.31 E-value=12 Score=44.53 Aligned_cols=50 Identities=22% Similarity=0.604 Sum_probs=35.7
Q ss_pred CcccccCCCcccCCCCCceecCCCCC-CCcchhhHHHHHhhCCCCCCCCccccccccC
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHKG 74 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kg 74 (1079)
..|-.|..+| +|-.+|-|.||. |-+|-+|+----.-|.+ ||.-+|+-.+.
T Consensus 15 y~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~ 65 (438)
T KOG0457|consen 15 YNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDT 65 (438)
T ss_pred CCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecC
Confidence 4899999886 477899999998 99999999433333322 44566765543
No 126
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=39.20 E-value=23 Score=29.36 Aligned_cols=30 Identities=33% Similarity=0.810 Sum_probs=24.6
Q ss_pred cccccCCCcccCCCCCceecCCCCC-CCcchhhHHH
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEY 53 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~-fpvCr~Cyey 53 (1079)
.|.+|+..+ .| ....|.+|. |-+|..||..
T Consensus 2 ~C~~C~~~i----~g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPI----VG-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCC----cC-CEEECCCCCCCcCHHHHHCc
Confidence 588999854 25 789999997 9999999953
No 127
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=38.26 E-value=25 Score=29.66 Aligned_cols=30 Identities=27% Similarity=0.938 Sum_probs=25.2
Q ss_pred cccccCCCcccCCCCCceecCCCC-CCCcchhhHH
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cye 52 (1079)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987652 4588999999 9999999995
No 128
>PRK12438 hypothetical protein; Provisional
Probab=38.18 E-value=6.4e+02 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhh
Q 001421 1012 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLW 1057 (1079)
Q Consensus 1012 g~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~s~~la~~~~~lw 1057 (1079)
++.++++=.++..+-|+.+++.|+-|.|.|.+..-++.++++..+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556667777888999887766555555555444
No 129
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.13 E-value=37 Score=30.02 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=35.1
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
.-|+.|+.++-.+. .+-++-=.||-| |.+|-|-.. +..||-|+--+-+
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 36999999975443 355666679987 999997654 4799999876643
No 130
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.99 E-value=9.7 Score=29.63 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=11.6
Q ss_pred HHHhhCCCCCCCCccccc
Q 001421 53 YERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 53 yerkeG~~~CPqCkt~Yk 70 (1079)
|+-++....||.|+.+-.
T Consensus 11 y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred ECCCcCCCcCcCCCCcHH
Confidence 333336678999987643
No 131
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=36.50 E-value=34 Score=27.95 Aligned_cols=43 Identities=23% Similarity=0.716 Sum_probs=31.5
Q ss_pred ccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcc
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt 67 (1079)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88899888 33333333 2 679999999995544 67789999985
No 132
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=36.39 E-value=9.4 Score=37.74 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=18.1
Q ss_pred eecCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001421 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 36 fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
-.-|+.|+ ++++..+-.-.||+|+.+
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCC
Confidence 35577776 556666666679999965
No 133
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=36.24 E-value=21 Score=31.84 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=24.7
Q ss_pred cCCCcccccCCC---cccCCCCCceecCCCCCCC
Q 001421 15 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 45 (1079)
Q Consensus 15 ~~~~~CqiCgd~---vg~~~~G~~fvaC~eC~fp 45 (1079)
..|-+|.-|+.- +...+||...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 457789999854 4446899999999999985
No 134
>COG4818 Predicted membrane protein [Function unknown]
Probab=36.03 E-value=2.1e+02 Score=28.08 Aligned_cols=26 Identities=31% Similarity=0.453 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCe
Q 001421 928 IGGVSSHLFAVFQGLLKVLAGIDTNF 953 (1079)
Q Consensus 928 i~~vsa~LfAvl~aLLk~L~g~~~~F 953 (1079)
|.+..+++++.+.+++-.+.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 45566888888888888777666666
No 135
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=35.95 E-value=83 Score=37.31 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=28.1
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001421 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 531 hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+|- ++.|-+
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiPG--aV~EYv 181 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIPG--AVNEYV 181 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCCc--hHHHHH
Confidence 3558888775443322 358999999999999754 677654
No 136
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.86 E-value=25 Score=44.50 Aligned_cols=61 Identities=28% Similarity=0.781 Sum_probs=42.1
Q ss_pred ccCCCcccccCCCcccCCCCC---ceecCCCCC--------------------CCcchhhHH-HH----Hh--hCCCCCC
Q 001421 14 NVGGQVCQICGDNVGKTVDGN---PFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCP 63 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~---~fvaC~eC~--------------------fpvCr~Cye-ye----rk--eG~~~CP 63 (1079)
.....+|.-|=.++---.+=. +|..|..|| ||.|-.|-+ |+ || --.-|||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 345569999999974333322 799999994 999999974 33 33 2236999
Q ss_pred CCcccc--ccccC
Q 001421 64 QCKTRY--KKHKG 74 (1079)
Q Consensus 64 qCkt~Y--kr~kg 74 (1079)
.|+-.| ++++|
T Consensus 178 ~CGP~~~l~~~~g 190 (750)
T COG0068 178 KCGPHLFLVNHDG 190 (750)
T ss_pred ccCCCeEEEcCCC
Confidence 999755 44443
No 137
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.62 E-value=20 Score=27.07 Aligned_cols=28 Identities=32% Similarity=0.920 Sum_probs=12.1
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhh
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~C 50 (1079)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998864 357889999999998877
No 138
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=34.67 E-value=19 Score=30.96 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.7
Q ss_pred CCcccccCCCcccCCCCCceecCCCCCCCc
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
.-+|..||.++.++. ...-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 457999999995443 23358898898865
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=34.28 E-value=13 Score=43.66 Aligned_cols=62 Identities=23% Similarity=0.503 Sum_probs=40.5
Q ss_pred CCcccccCCCcccCCCCCceecCCCCCCCcchh-hHHHHHhhCCCCCCCCcccc---ccc--cCCCcccCC
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP-CYEYERKDGNQSCPQCKTRY---KKH--KGSPAILGD 81 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~-CyeyerkeG~~~CPqCkt~Y---kr~--kgsprv~gd 81 (1079)
+--|..||+-+|+...----.+|-. -.=-- =|||--+.|.++||-|+.-- ||. -|||-|+.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 4579999999999755444555521 11112 26777899999999998322 322 367888655
No 140
>PRK11827 hypothetical protein; Provisional
Probab=34.05 E-value=26 Score=31.27 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=22.9
Q ss_pred CcchhhHHHHHhhCCCCCCCCccccccccCCCcccCC
Q 001421 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 45 pvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd 81 (1079)
|+|+-=.+|...+..-.|..|+-.|--..|=|-+--|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL~d 48 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLET 48 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCccccCHH
Confidence 4554444444333446788899999777666665434
No 141
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.69 E-value=13 Score=32.81 Aligned_cols=12 Identities=42% Similarity=1.135 Sum_probs=7.1
Q ss_pred CCCCCCcccccc
Q 001421 60 QSCPQCKTRYKK 71 (1079)
Q Consensus 60 ~~CPqCkt~Ykr 71 (1079)
-+||+||.-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 456666666644
No 142
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.68 E-value=11 Score=32.42 Aligned_cols=7 Identities=43% Similarity=1.312 Sum_probs=3.4
Q ss_pred CCCCCcc
Q 001421 61 SCPQCKT 67 (1079)
Q Consensus 61 ~CPqCkt 67 (1079)
.||+|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4555543
No 143
>PF15050 SCIMP: SCIMP protein
Probab=33.32 E-value=38 Score=34.14 Aligned_cols=41 Identities=22% Similarity=0.563 Sum_probs=26.3
Q ss_pred ccccccchhhhhhhHHHHHHH-----HHHHHHHHcCCCCCeeeCCCC
Q 001421 918 EWWRNEQFWVIGGVSSHLFAV-----FQGLLKVLAGIDTNFTVTSKA 959 (1079)
Q Consensus 918 ~wWrneqfW~i~~vsa~LfAv-----l~aLLk~L~g~~~~F~VTpKg 959 (1079)
+|||+ .||+|-++...+..+ +-.+...+.+...+|+++.-.
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~ 47 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPL 47 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccch
Confidence 59996 799987765433322 233445566677889888643
No 144
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=33.18 E-value=22 Score=44.34 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=25.0
Q ss_pred cCCCcccccCCCcccCCCCCc-----------eec-----CCCCCCCcchhhHHHH
Q 001421 15 VGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYE 54 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~~G~~-----------fva-----C~eC~fpvCr~Cyeye 54 (1079)
...++|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 196 ~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 196 KKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred CCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 445689999999444444322 222 0123799999999654
No 145
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=33.18 E-value=23 Score=36.78 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=40.9
Q ss_pred CcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001421 26 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 26 ~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
-||+..+|-.-+-|.-|+|.-|..=.|-++.+-+-.=|+|--+|--
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iD 122 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYID 122 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhh
Confidence 3788888988999999999999999988888888999999999953
No 146
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=32.54 E-value=4.9e+02 Score=29.93 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-chhhhHHhhh
Q 001421 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSC-YVSDDGA-AMLTFEALSE 404 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~-yvsDDG~-~~ltf~al~E 404 (1079)
..+-++|=|+.|-.| +++ ..-.=.-.++.++||++++++ ++..|.. -.-|.+.|.+
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~ 78 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEA 78 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHH
Confidence 356678888888887 454 356666677888999998887 4444433 1445455443
No 147
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=59 Score=40.73 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.3
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001421 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
.+.||++-|+|+-+| |...+...||-|+...-=|.=-..+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887655546678899998764
No 148
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.97 E-value=31 Score=28.59 Aligned_cols=45 Identities=27% Similarity=0.750 Sum_probs=31.5
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHH-----hhCCCCCCCCcc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER-----KDGNQSCPQCKT 67 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer-----keG~~~CPqCkt 67 (1079)
+|+|||. ..+++..|.|..|.--+=..|..... .++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 56677899999998766666765442 234566777653
No 149
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=30.87 E-value=31 Score=34.10 Aligned_cols=34 Identities=26% Similarity=0.687 Sum_probs=25.5
Q ss_pred CCCCceecCCCCCCC--cchhhHHHHHhhCCCCCCCCcccccc
Q 001421 31 VDGNPFVACDVCAFP--VCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 31 ~~G~~fvaC~eC~fp--vCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
+-|-.-..|.+|+.- ++..| +|..||+|..++++
T Consensus 37 ~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~ 72 (111)
T PF14319_consen 37 ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATE 72 (111)
T ss_pred cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHH
Confidence 346677889888753 55556 47899999999965
No 150
>PRK07219 DNA topoisomerase I; Validated
Probab=30.64 E-value=25 Score=45.71 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=31.4
Q ss_pred CCcccccCCCcccC--CCCCceecCCCCCCCcchhhHHHHH----hhCCCCCCCCccccccc
Q 001421 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyer----keG~~~CPqCkt~Ykr~ 72 (1079)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34688887664332 3455 88885 6777753332211 12347899998866543
No 151
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=30.12 E-value=34 Score=28.80 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=26.5
Q ss_pred cccccCCCcccCCCCCceecCCCCC-CCcchhhHHHHHhhCC
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGN 59 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~ 59 (1079)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|--++
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~~ 38 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPSN 38 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCCC
Confidence 6999999983 2566677776 9999999965554333
No 152
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.00 E-value=32 Score=37.72 Aligned_cols=39 Identities=23% Similarity=0.595 Sum_probs=25.9
Q ss_pred CCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.+.|.+||..+..+ ...+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~------------~~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALS------------HWGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCC------------CCcccHHHHhhCCcc-cCcCccCCCc
Confidence 45799999887332 124788887654332 3589999865
No 153
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=29.88 E-value=35 Score=30.20 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=11.6
Q ss_pred hhCCCCCCCCccccc------cccCCCcccCCC
Q 001421 56 KDGNQSCPQCKTRYK------KHKGSPAILGDR 82 (1079)
Q Consensus 56 keG~~~CPqCkt~Yk------r~kgsprv~gd~ 82 (1079)
.+.|..-|=|-+|-| -..|+=||.|.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~ 47 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEP 47 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCC
Confidence 345555555555544 356777888873
No 154
>PRK14973 DNA topoisomerase I; Provisional
Probab=29.83 E-value=31 Score=45.48 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=31.8
Q ss_pred CcccccCCCcccC--CCCCceecCCCCCCCcchhhHHHHHh-hC-----CCCCCCCccc
Q 001421 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 68 (1079)
Q Consensus 18 ~~CqiCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerk-eG-----~~~CPqCkt~ 68 (1079)
..|..||.++-.. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999876432 3454 99996 66888855544322 12 3689999973
No 155
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.63 E-value=28 Score=27.96 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=19.9
Q ss_pred CCCc--ccccCCCcccCCCCCceecCCCCCC
Q 001421 16 GGQV--CQICGDNVGKTVDGNPFVACDVCAF 44 (1079)
Q Consensus 16 ~~~~--CqiCgd~vg~~~~G~~fvaC~eC~f 44 (1079)
.+.. |.+||.......||- .-|.+|+-
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 4445 999999988888885 44777764
No 156
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.36 E-value=15 Score=42.89 Aligned_cols=45 Identities=29% Similarity=0.737 Sum_probs=37.5
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
+|.||-+=+-.+- -=-||+-..|+.|.--.-++||..||-|++.-
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 7889988765542 12489999999999999999999999999876
No 157
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=29.27 E-value=1.2e+02 Score=35.77 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.1
Q ss_pred cCchhhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001421 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 531 hh~KAGalNallrvSav~tngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
.+.|+-.|=-.+-... ..+.+||-.+|||.|+|- ++.|-+
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiPG--aV~EYv 180 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFPG--AVNEYV 180 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCCc--hHHHHH
Confidence 4558888775443322 358999999999999754 577654
No 158
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=29.10 E-value=34 Score=43.85 Aligned_cols=58 Identities=26% Similarity=0.707 Sum_probs=42.7
Q ss_pred ccCCCcccccCCCcccCCC----CCceecCCCCC--------------------CCcchhhHH-HH----Hhh--CCCCC
Q 001421 14 NVGGQVCQICGDNVGKTVD----GNPFVACDVCA--------------------FPVCRPCYE-YE----RKD--GNQSC 62 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~----G~~fvaC~eC~--------------------fpvCr~Cye-ye----rke--G~~~C 62 (1079)
...-.+|.-|-+++ .|.+ +=+|.-|..|| |+.|..|.. |+ |+- ---+|
T Consensus 65 ppD~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C 143 (711)
T TIGR00143 65 PADVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIAC 143 (711)
T ss_pred CCchhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccC
Confidence 34567999999998 4432 55899999994 999999984 32 332 22589
Q ss_pred CCCccccccc
Q 001421 63 PQCKTRYKKH 72 (1079)
Q Consensus 63 PqCkt~Ykr~ 72 (1079)
|.|+=|+.-.
T Consensus 144 ~~Cgp~l~l~ 153 (711)
T TIGR00143 144 PRCGPQLNFV 153 (711)
T ss_pred CCCCcEEEEE
Confidence 9999988643
No 159
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=28.53 E-value=36 Score=40.78 Aligned_cols=35 Identities=23% Similarity=0.590 Sum_probs=23.1
Q ss_pred CceecCCCCCCCcchhhHHHHHhh-CCCCCCCCccccccc
Q 001421 34 NPFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTRYKKH 72 (1079)
Q Consensus 34 ~~fvaC~eC~fpvCr~Cyeyerke-G~~~CPqCkt~Ykr~ 72 (1079)
+..++|+||+--+=+| ..+. ....||+|++.-.|+
T Consensus 11 ~~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 11 AKHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CCeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 3368899998764333 1122 335799999998665
No 160
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.02 E-value=27 Score=42.93 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=31.9
Q ss_pred CCCCC-ceecCCCCCCC-cchhhH---HHHHhhCCCCCCCCccccccccCCCcccC
Q 001421 30 TVDGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (1079)
Q Consensus 30 ~~~G~-~fvaC~eC~fp-vCr~Cy---eyerkeG~~~CPqCkt~Ykr~kgsprv~g 80 (1079)
+-.|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=.+
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 44555 47778888765 466663 33355666667777777776666666543
No 161
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.87 E-value=31 Score=30.73 Aligned_cols=29 Identities=21% Similarity=0.626 Sum_probs=20.7
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
---+|.-||.+-.+. .|| .+-|.||||.|
T Consensus 19 miYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 19 MIYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEEecccccccccc-CCC-cEehhhcchHH
Confidence 345888899885443 355 47899999976
No 162
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=27.80 E-value=1.4e+03 Score=32.11 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=44.6
Q ss_pred cccchHHHHHHHHHCCCEEEEecCCCCccc----ccCCCCHHHHHHHHHHHhccchhHhhhcccccccccCCCCCcccch
Q 001421 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFK----GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERF 850 (1079)
Q Consensus 775 sVTED~~ts~rL~~rGWrsvY~~p~~aaf~----G~aPetl~a~lkQR~RWA~G~lQIl~~r~~PL~~g~~~~Lt~~QRL 850 (1079)
.+.||+..|+....||-++.++. -..+-. |....+. =-..-+.|+=+..++|. .|.++.++.+..-|
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~E-YiQvGKGRDvGlnqI~~-----FeaKia~G~GEQ~LSRd---~YrLG~~ldffRmL 1243 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHE-YIQVGKGRDVGLNQISN-----FEAKIANGNGEQTLSRD---YYRLGTQLDFFRML 1243 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccce-eeecccccccCcchhhh-----hhhhhcCCCcchhhhHH---HHHhcccccHHHHH
Confidence 68999999999999999998883 222111 2222211 12356888888777764 22235667777666
Q ss_pred hhhh
Q 001421 851 AYVN 854 (1079)
Q Consensus 851 ~Yl~ 854 (1079)
++..
T Consensus 1244 Sfyf 1247 (1679)
T KOG0916|consen 1244 SFYF 1247 (1679)
T ss_pred HHHh
Confidence 5443
No 163
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.72 E-value=39 Score=43.05 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=6.6
Q ss_pred CCCCCCCcccc
Q 001421 59 NQSCPQCKTRY 69 (1079)
Q Consensus 59 ~~~CPqCkt~Y 69 (1079)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45677776553
No 164
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.63 E-value=25 Score=34.11 Aligned_cols=44 Identities=43% Similarity=0.679 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhHhhhccCCcccccccCC-------CCCCCCCCCCCccccceecccCCC
Q 001421 453 KREYEEFKIRINGLVAKAQKIPEEGWVMQDG-------TPWPGNNTRDHPGMIQVFLGENGG 507 (1079)
Q Consensus 453 kreyee~k~ri~~L~~~~~~~p~e~w~m~dg-------t~wpg~~~rdhp~~iqv~l~~~G~ 507 (1079)
|-||+|+|. + ..++|.|+|= +.|.-.+--.||.+.+-|--..||
T Consensus 20 k~eyqel~~-------~----~~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKE-------K----DFDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHH-------h----hhcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 569999874 2 1368999874 456555556899888877666664
No 165
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.58 E-value=47 Score=38.44 Aligned_cols=44 Identities=23% Similarity=0.623 Sum_probs=29.0
Q ss_pred CCCcccccCCCc--c-----cCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001421 16 GGQVCQICGDNV--G-----KTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 16 ~~~~CqiCgd~v--g-----~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
+.+.|.+||..= + .+.+|.-+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 345999999871 1 1268999999988764 333334567777653
No 166
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=24 Score=31.65 Aligned_cols=17 Identities=41% Similarity=1.015 Sum_probs=14.6
Q ss_pred HhhCCCCCCCCcccccc
Q 001421 55 RKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 55 rkeG~~~CPqCkt~Ykr 71 (1079)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 167
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.92 E-value=79 Score=28.31 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=36.1
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCC-CCCCCCcc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 67 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CPqCkt 67 (1079)
...+|..||-.|--.+.+ .-.+|..||=-+=+=|+ .-||-+| -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 445899999998655555 45579999877444466 5678776 57999973
No 168
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.67 E-value=16 Score=26.55 Aligned_cols=13 Identities=38% Similarity=0.928 Sum_probs=6.0
Q ss_pred hhCCCCCCCCccc
Q 001421 56 KDGNQSCPQCKTR 68 (1079)
Q Consensus 56 keG~~~CPqCkt~ 68 (1079)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444445555443
No 169
>COG4393 Predicted membrane protein [Function unknown]
Probab=26.56 E-value=1.2e+03 Score=27.95 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCCchhHHHHHHHHHHHHHhhhee
Q 001421 1036 NRTPTIVVVWSILLASIFSLLWVR 1059 (1079)
Q Consensus 1036 ~r~p~~v~~~s~~la~~~~~lwv~ 1059 (1079)
|+.-.-+.+-+.++|+||+++|-+
T Consensus 196 n~~~f~iyi~~~ilaiifl~flf~ 219 (405)
T COG4393 196 NKSTFYIYILFTILAIIFLLFLFK 219 (405)
T ss_pred cccchHHHHHHHHHHHHHHHHHhH
Confidence 455555555567888899887643
No 170
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=26.48 E-value=34 Score=44.77 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=32.6
Q ss_pred cCCCcccccCCCccc---CCCCCceecCCCCCCCcchhhHHHHH-----------hhCCCCCCCCccccccccC
Q 001421 15 VGGQVCQICGDNVGK---TVDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 74 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~---~~~G~~fvaC~eC~fpvCr~Cyeyer-----------keG~~~CPqCkt~Ykr~kg 74 (1079)
.....|..||..-.+ ...| .|++|. +||-|+-=...++ ......||.|+......+|
T Consensus 590 ~~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 590 VTEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred ccCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 345689999864222 2345 599994 5777742111111 1225689999866654433
No 171
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.20 E-value=1.1e+03 Score=28.12 Aligned_cols=19 Identities=21% Similarity=0.601 Sum_probs=13.7
Q ss_pred hhcccccccccccccchhh
Q 001421 909 MRWSGVGIDEWWRNEQFWV 927 (1079)
Q Consensus 909 ~rwsgvsi~~wWrneqfW~ 927 (1079)
.+-.|-.|+.||....|+-
T Consensus 172 L~~NGS~Ik~WW~~HHy~s 190 (330)
T PF07851_consen 172 LIVNGSRIKGWWVFHHYIS 190 (330)
T ss_pred hccCCCcchHHHHHHHHHH
Confidence 3445777899998877763
No 172
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=25.97 E-value=34 Score=35.34 Aligned_cols=45 Identities=31% Similarity=0.768 Sum_probs=33.4
Q ss_pred CCcccccCCCcccCCCCCceecCCCCCCCcch-hhHHHHHhhCCCCCCCCcccccccc
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCR-PCYEYERKDGNQSCPQCKTRYKKHK 73 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr-~CyeyerkeG~~~CPqCkt~Ykr~k 73 (1079)
.++|-||-..+- ---|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 468999977542 3569999999996 899443 33799999876554
No 173
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=35 Score=36.50 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=35.6
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCk 66 (1079)
.--.|.||-+..-.. ....|+--.|+.|-+.-.. +.-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 345899999886333 6667899999999988877 889999999
No 174
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=25.75 E-value=26 Score=27.22 Aligned_cols=25 Identities=32% Similarity=0.821 Sum_probs=11.9
Q ss_pred CcccccCCCcccCCCCCceecCCCCCC
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAF 44 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~f 44 (1079)
..|..|+.+-.. +||..|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 357888887655 6777766 888875
No 175
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.61 E-value=21 Score=35.47 Aligned_cols=28 Identities=14% Similarity=0.533 Sum_probs=16.2
Q ss_pred ecCCCCCCCcchhhHHHHHhhCC-CCCCCCcccccc
Q 001421 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 71 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~-~~CPqCkt~Ykr 71 (1079)
.-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466666 334444322 349999987544
No 176
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=25.61 E-value=17 Score=26.89 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=9.7
Q ss_pred HhhCCCCCCCCccc
Q 001421 55 RKDGNQSCPQCKTR 68 (1079)
Q Consensus 55 rkeG~~~CPqCkt~ 68 (1079)
..++.+.||+|+++
T Consensus 12 ~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 12 IDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccccChhhCCC
Confidence 36667777777765
No 177
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=25.49 E-value=47 Score=36.74 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=54.4
Q ss_pred HhccchHHHHHhHhhhcCCCCCCCchHhHHHHHHHhcccccccccccccccCcccccccchHHHHHHHHHCCCEEEEecC
Q 001421 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
Q Consensus 719 ~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~V~sC~Ye~~T~wGkevGW~~gsVTED~~ts~rL~~rGWrsvY~~p 798 (1079)
..+|....+.++.+..++|++. ..| || | .||-+++.||..+|.+......
T Consensus 110 ~~~Gg~~~~~k~~f~~VNGf~n----------------------~f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~ 159 (219)
T cd00899 110 TYFGGVLALTREQFRKVNGFSN----------------------AYW----GW--G--GEDDDLYNRIKAAGLKITRPSG 159 (219)
T ss_pred cccccceeeEHHHHHHhCCcCC----------------------cCc----cC--C--cchHHHHHHHHHCCCeEEeccC
Confidence 3577788888888999999876 233 33 2 4899999999999988766642
Q ss_pred CCC-c--c-------cccCCCCHHHHHHHHHHHhccchhHh
Q 001421 799 KRP-A--F-------KGSAPINLSDRLNQVLRWALGSVEIL 829 (1079)
Q Consensus 799 ~~a-a--f-------~G~aPetl~a~lkQR~RWA~G~lQIl 829 (1079)
... . + ....|.-+.....++.||+...+..+
T Consensus 160 ~~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 160 DTGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred cccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 211 0 0 12244455566677788887777655
No 178
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.14 E-value=19 Score=35.60 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=16.0
Q ss_pred ecCCCCCCCcchhhHHHHHhhCC-CCCCCCcccc
Q 001421 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRY 69 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~-~~CPqCkt~Y 69 (1079)
.-|+.|+ ++++..+-. -.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCC
Confidence 4476666 245544444 5699999764
No 179
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=24.72 E-value=1.6e+03 Score=29.64 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhhe
Q 001421 1010 LFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWV 1058 (1079)
Q Consensus 1010 l~g~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~s~~la~~~~~lwv 1058 (1079)
+-.+++.+.-.++..+.+..+++.|.-|+|.+.++-.+|.+++.-.+|=
T Consensus 234 lP~~~iL~aial~~aia~f~ai~~r~~Rip~~~~vll~l~~ii~g~~~p 282 (885)
T COG1615 234 LPAKLILIAIALLCAIAFFSAIFLRDLRIPAIGLVLLLLSSIIVGSLWP 282 (885)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhHH
Confidence 4456777777777777888888888889999888776666666655663
No 180
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.70 E-value=91 Score=26.46 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=28.5
Q ss_pred cccccCCCcccCCCCCceecCCCCCC---CcchhhHHHHHh-hCCCCCCCCc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCK 66 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeyerk-eG~~~CPqCk 66 (1079)
+|.||-+ +-+++..+..+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 334444457788 4542 144567755544 4467899996
No 181
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=24.51 E-value=1.6e+03 Score=28.89 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCccc
Q 001421 858 YPLTAIPLLMYCTLPAVCLLTNKFIM 883 (1079)
Q Consensus 858 y~l~slp~liylllPil~Ll~G~~ii 883 (1079)
-+-+++..+..+.+|.+|...|..-+
T Consensus 46 ~~~~a~~~i~liaip~i~~~ig~~~f 71 (952)
T TIGR02921 46 PIEFALALILLIAIPAICIGIGGTCF 71 (952)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 34556677777888999887775544
No 182
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.41 E-value=31 Score=27.54 Aligned_cols=11 Identities=45% Similarity=1.440 Sum_probs=9.5
Q ss_pred CCCCCcccccc
Q 001421 61 SCPQCKTRYKK 71 (1079)
Q Consensus 61 ~CPqCkt~Ykr 71 (1079)
.||.|+|.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 183
>PTZ00293 thymidine kinase; Provisional
Probab=24.21 E-value=34 Score=37.55 Aligned_cols=35 Identities=20% Similarity=0.586 Sum_probs=22.6
Q ss_pred CcccccCCCcccC----CCCCc-eecCCCCCCCcchhhHH
Q 001421 18 QVCQICGDNVGKT----VDGNP-FVACDVCAFPVCRPCYE 52 (1079)
Q Consensus 18 ~~CqiCgd~vg~~----~~G~~-fvaC~eC~fpvCr~Cye 52 (1079)
.+|..||.+.-.| .+|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5899999884432 33443 23333445789999995
No 184
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.94 E-value=50 Score=28.91 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=9.7
Q ss_pred cccccCCCcccC
Q 001421 19 VCQICGDNVGKT 30 (1079)
Q Consensus 19 ~CqiCgd~vg~~ 30 (1079)
.|..||.+|.+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 688899888775
No 185
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.91 E-value=33 Score=27.39 Aligned_cols=11 Identities=36% Similarity=1.346 Sum_probs=9.3
Q ss_pred CCCCCcccccc
Q 001421 61 SCPQCKTRYKK 71 (1079)
Q Consensus 61 ~CPqCkt~Ykr 71 (1079)
.||+|+++|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999943
No 186
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.79 E-value=59 Score=36.51 Aligned_cols=58 Identities=24% Similarity=0.495 Sum_probs=43.7
Q ss_pred CCcccccCCCcccCCCCCceecCCCCC-CCc--chhhHHHHHh-hCCCCCCCCccccccccCC
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCA-FPV--CRPCYEYERK-DGNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~-fpv--Cr~Cyeyerk-eG~~~CPqCkt~Ykr~kgs 75 (1079)
+..|.||.++........+-++| .|. -+. =|.|.+-..+ -|+-.|..|+..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 46899999987655444778999 672 222 4889988876 5779999999999887543
No 187
>PRK00068 hypothetical protein; Validated
Probab=23.68 E-value=1.3e+03 Score=31.23 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhh
Q 001421 1013 KLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLW 1057 (1079)
Q Consensus 1013 ~l~~~~Wvv~nL~p~l~gL~gR~~r~p~~v~~~s~~la~~~~~lw 1057 (1079)
..+.++-+++..+-|+.+++.|+-|.|.+..+..++.+++...+|
T Consensus 260 ~~iL~~ia~i~a~~~~~~~~~~~~rlp~i~~~l~v~s~~v~g~i~ 304 (970)
T PRK00068 260 KLILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIVGAAW 304 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555566666777889888877665555544443
No 188
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=23.58 E-value=50 Score=41.24 Aligned_cols=41 Identities=29% Similarity=0.613 Sum_probs=24.5
Q ss_pred CCcccccCCCcccCCC----------CCceec--CCCCCCCcchhhHHHHHhhC
Q 001421 17 GQVCQICGDNVGKTVD----------GNPFVA--CDVCAFPVCRPCYEYERKDG 58 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~----------G~~fva--C~eC~fpvCr~CyeyerkeG 58 (1079)
..+|.|||.+--++.+ =.-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 5799999997332222 112333 122379999999954 3444
No 189
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.99 E-value=26 Score=34.74 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=17.7
Q ss_pred ecCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001421 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
.-|+.|+ ++++..+-...||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4466666 345554445779999976433
No 190
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.91 E-value=33 Score=35.53 Aligned_cols=43 Identities=37% Similarity=0.872 Sum_probs=25.7
Q ss_pred CCCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHH-HhhCCCCCCCCcc
Q 001421 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 67 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CPqCkt 67 (1079)
.+..|.-||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4567999984 46999988841 122211110 1234578999986
No 191
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=22.86 E-value=65 Score=26.71 Aligned_cols=29 Identities=28% Similarity=0.809 Sum_probs=23.0
Q ss_pred cccccCCCcccCCCCCceecCCCC-CCCcchhhHH
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cye 52 (1079)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588888743 24 46789999 8999999994
No 192
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=22.83 E-value=48 Score=30.55 Aligned_cols=31 Identities=26% Similarity=0.730 Sum_probs=24.4
Q ss_pred cCCCcccccCC--Cccc-CCCCCceecCCCCCCC
Q 001421 15 VGGQVCQICGD--NVGK-TVDGNPFVACDVCAFP 45 (1079)
Q Consensus 15 ~~~~~CqiCgd--~vg~-~~~G~~fvaC~eC~fp 45 (1079)
..|-+|.-|+. .|.+ .+||...+-|-+|||-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 45779999984 4544 6789999999999984
No 193
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.76 E-value=3.2e+02 Score=30.84 Aligned_cols=78 Identities=14% Similarity=0.303 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCCCeeeCCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001421 940 QGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFW 1019 (1079)
Q Consensus 940 ~aLLk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~L~iP~~~Llilnligiv~gi~r~i~~~~~~w~~l~g~l~~~~W 1019 (1079)
-.++++++.+...|.-|...-. . -++|.++|. .++++.++...+ ..+..+++++|
T Consensus 156 y~L~nlm~~~nv~f~~~aSVlG------------Y--cLLPlvvlS---~v~i~~~~~g~v--------g~il~~~~v~W 210 (249)
T KOG3103|consen 156 YFLLNLMSNKNVSFGCVASVLG------------Y--CLLPLVVLS---FVNIFVGLQGTV--------GYILSALFVLW 210 (249)
T ss_pred HHHHHHHhhcCcceeeehHHHH------------H--HHHHHHHHH---HHHHHHhccchH--------HHHHHHHHHHH
Confidence 4456666656677765543321 1 256755544 444554432221 13456788888
Q ss_pred HHHHHHHHHHHhhcCCCCCchhH
Q 001421 1020 VIVHLYPFLKGLMGRQNRTPTIV 1042 (1079)
Q Consensus 1020 vv~nL~p~l~gL~gR~~r~p~~v 1042 (1079)
..+-..-++.+..+-+++.+.|.
T Consensus 211 ~t~aaS~lfv~al~~~~~rlLia 233 (249)
T KOG3103|consen 211 CTYAASKLFVSALSMENQRLLVA 233 (249)
T ss_pred HHHHHHHHHHHHhhccccchhhh
Confidence 88888777777666666666543
No 194
>PRK08359 transcription factor; Validated
Probab=22.59 E-value=29 Score=37.16 Aligned_cols=30 Identities=37% Similarity=1.050 Sum_probs=19.5
Q ss_pred CcccccCCCcccC-----CCCCceecCCCCCCCcchhhH-HHHH
Q 001421 18 QVCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCY-EYER 55 (1079)
Q Consensus 18 ~~CqiCgd~vg~~-----~~G~~fvaC~eC~fpvCr~Cy-eyer 55 (1079)
-.|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997322 24443 45778888 6744
No 195
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.54 E-value=49 Score=37.72 Aligned_cols=22 Identities=41% Similarity=1.058 Sum_probs=17.0
Q ss_pred ccCCCcccccCCCcccCCCCCceecCCCCC
Q 001421 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA 43 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~ 43 (1079)
...+..|.-||+- -|++|..|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 4566899999854 589998884
No 196
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.33 E-value=70 Score=23.78 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=13.5
Q ss_pred ccccCCCcccCCCCCceecCCCCCC
Q 001421 20 CQICGDNVGKTVDGNPFVACDVCAF 44 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~f 44 (1079)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55666665444444444 4777765
No 197
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=22.21 E-value=39 Score=40.67 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=22.6
Q ss_pred ecCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001421 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
++|++|+--+..|=- +..+...||+|+++-.|+
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCC
Confidence 889999987554311 122345699999998765
No 198
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=22.07 E-value=96 Score=35.89 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=26.4
Q ss_pred CCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001421 549 TNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 549 tngp~il~lDcDh~i~~~~~Lr~am~ff~DP~~g~~v~~V 588 (1079)
+..+||+++|.|++ |.+++-+....+..--....+.+||
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 56799999999997 7877666655555322223366666
No 199
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.05 E-value=41 Score=45.21 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=30.3
Q ss_pred CcccccCCCcccCCCCCceecCCCCCCCc-----chhhHHHHH--hhCCCCCCCCccccccc
Q 001421 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYER--KDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpv-----Cr~Cyeyer--keG~~~CPqCkt~Ykr~ 72 (1079)
..|.-||..+-. .-|.+||-+. |..|=-.-- ..+..-||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478889886421 2788888664 777753111 12355799998876543
No 200
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.84 E-value=5.1e+02 Score=27.99 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 001421 978 LIPPTTLLVINLVGVVAGVSYAINS 1002 (1079)
Q Consensus 978 ~iP~~~Llilnligiv~gi~r~i~~ 1002 (1079)
++.-..|+++.+.+++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777888888888877643
No 201
>PF12773 DZR: Double zinc ribbon
Probab=21.48 E-value=60 Score=26.99 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.3
Q ss_pred CCcccccCCCcc
Q 001421 17 GQVCQICGDNVG 28 (1079)
Q Consensus 17 ~~~CqiCgd~vg 28 (1079)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 345555555554
No 202
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=20.94 E-value=57 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCcccccCCCcccCCCCCceecCCCCCCCcchhhHHHH
Q 001421 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE 54 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye 54 (1079)
...|..|++.. .-.-|.+|.-++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45788887652 45779999999999999643
No 203
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.85 E-value=59 Score=24.74 Aligned_cols=28 Identities=32% Similarity=0.898 Sum_probs=21.2
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhh
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~C 50 (1079)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998775 3433889999999887655
No 204
>PF04641 Rtf2: Rtf2 RING-finger
Probab=20.69 E-value=72 Score=35.84 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=37.5
Q ss_pred CCcccccCCCcccCCCCC-ceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001421 17 GQVCQICGDNVGKTVDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~-~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
.-+|.|++... +|. -||+=--||=-+|..|.+-- + .+..||.|.++|..
T Consensus 113 ~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 113 RFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred eeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 34899998776 444 58888889988888888544 4 45679999999964
No 205
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=20.61 E-value=78 Score=28.66 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=30.5
Q ss_pred cccccCCCcccCCCCCceecCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
.|.||++= +. ++.++ .||.-.||.|-|--.++++..||.|+.+.
T Consensus 6 ~CpIt~~l-M~----dPVi~--~~G~tyer~~I~~~l~~~~~~~P~t~~~l 49 (73)
T PF04564_consen 6 LCPITGEL-MR----DPVIL--PSGHTYERSAIERWLEQNGGTDPFTRQPL 49 (73)
T ss_dssp B-TTTSSB--S----SEEEE--TTSEEEEHHHHHHHHCTTSSB-TTT-SB-
T ss_pred CCcCcCcH-hh----CceeC--CcCCEEcHHHHHHHHHcCCCCCCCCCCcC
Confidence 78888764 33 34444 35699999999999889889999998776
No 206
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=20.55 E-value=45 Score=30.22 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.0
Q ss_pred ceecCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001421 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 35 ~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 467888888776 23 599999874
No 207
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.28 E-value=45 Score=42.84 Aligned_cols=44 Identities=32% Similarity=0.739 Sum_probs=0.0
Q ss_pred ccccCCCcccCCCCCceecCCCC----------CCCcchhhHHHHHhhCCCCCCCCccccccccCC
Q 001421 20 CQICGDNVGKTVDGNPFVACDVC----------AFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC----------~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgs 75 (1079)
|+-||-- .-|..| +-..|+-|- |. +.--+.||+|++.+-+..|.
T Consensus 438 C~~Cg~v----------~~Cp~Cd~~lt~H~~~~~L~CH~Cg-~~-~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYI----------AECPNCDSPLTLHKATGQLRCHYCG-YQ-EPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCc----------ccCCCCCcceEEecCCCeeEeCCCC-CC-CCCCCCCCCCCCCeeEEecc
No 208
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.17 E-value=43 Score=42.68 Aligned_cols=44 Identities=27% Similarity=0.702 Sum_probs=0.0
Q ss_pred cccccCCCcccCCCCCceecCCCCCCC----------cchhhHHHHHhhCCCCCCCCccccccccC
Q 001421 19 VCQICGDNVGKTVDGNPFVACDVCAFP----------VCRPCYEYERKDGNQSCPQCKTRYKKHKG 74 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fp----------vCr~CyeyerkeG~~~CPqCkt~Ykr~kg 74 (1079)
.|.-||.. .-|..|.-| .|+-|- |...-. ..||+|+...-+..|
T Consensus 383 ~C~~Cg~~----------~~C~~C~~~l~~h~~~~~l~Ch~Cg-~~~~~~-~~Cp~Cg~~~l~~~g 436 (679)
T PRK05580 383 LCRDCGWV----------AECPHCDASLTLHRFQRRLRCHHCG-YQEPIP-KACPECGSTDLVPVG 436 (679)
T ss_pred EhhhCcCc----------cCCCCCCCceeEECCCCeEECCCCc-CCCCCC-CCCCCCcCCeeEEee
No 209
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=20.15 E-value=35 Score=34.60 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=32.5
Q ss_pred cCCCcccccCCC--cccCCCC-CceecCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001421 15 VGGQVCQICGDN--VGKTVDG-NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 15 ~~~~~CqiCgd~--vg~~~~G-~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
..+-.|.-||.. +....++ -.|.+| +.||.||-=. -.+...+.||||..+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~--~~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTE--KPKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceee--cCCcccccCCcCCCcee
Confidence 345678889943 3333332 379999 7899998432 22333355999997443
No 210
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.11 E-value=35 Score=34.84 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.8
Q ss_pred hCCCCCCCCccc
Q 001421 57 DGNQSCPQCKTR 68 (1079)
Q Consensus 57 eG~~~CPqCkt~ 68 (1079)
+..-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344669999976
Done!