Query 001423
Match_columns 1079
No_of_seqs 438 out of 2210
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 9.4E-61 2E-65 572.8 53.9 502 43-568 6-518 (525)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 8.3E-55 1.8E-59 522.0 44.7 403 58-487 34-449 (559)
3 KOG1965 Sodium/hydrogen exchan 100.0 1.3E-51 2.8E-56 477.2 30.1 435 11-462 9-462 (575)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 2.2E-49 4.8E-54 463.2 45.4 405 33-463 4-415 (429)
5 KOG1966 Sodium/hydrogen exchan 100.0 1.6E-48 3.5E-53 447.8 8.8 404 59-489 68-483 (670)
6 PRK05326 potassium/proton anti 100.0 1.4E-43 3E-48 429.3 39.8 391 32-461 3-398 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.5E-41 3.3E-46 409.8 40.7 395 38-450 17-436 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 1.5E-40 3.3E-45 369.0 29.6 383 36-459 7-394 (574)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.4E-34 3.1E-39 334.2 -2.5 372 44-452 5-380 (380)
10 PRK03562 glutathione-regulated 100.0 2.3E-28 5.1E-33 298.8 41.3 339 34-410 4-348 (621)
11 PRK03659 glutathione-regulated 100.0 3.8E-28 8.3E-33 296.2 40.8 338 32-411 2-346 (601)
12 PLN03159 cation/H(+) antiporte 100.0 1.7E-27 3.7E-32 298.5 41.5 353 33-412 41-406 (832)
13 PRK10669 putative cation:proto 100.0 1.8E-26 3.8E-31 280.2 42.8 342 35-412 6-358 (558)
14 TIGR00932 2a37 transporter, mo 100.0 1.5E-26 3.3E-31 256.4 31.9 269 45-335 2-273 (273)
15 COG0475 KefB Kef-type K+ trans 100.0 7.7E-25 1.7E-29 254.8 42.7 340 34-408 5-351 (397)
16 KOG4505 Na+/H+ antiporter [Ino 99.9 5.4E-25 1.2E-29 238.2 27.3 392 40-451 19-432 (467)
17 COG4651 RosB Kef-type K+ trans 99.8 1.7E-17 3.7E-22 178.7 29.2 372 34-449 5-387 (408)
18 KOG1650 Predicted K+/H+-antipo 99.8 1.2E-17 2.6E-22 207.6 24.8 383 33-454 21-421 (769)
19 PRK14853 nhaA pH-dependent sod 99.1 5.7E-08 1.2E-12 113.1 29.3 271 99-409 64-357 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.5 4.7E-05 1E-09 87.7 25.7 266 99-408 54-337 (373)
21 PRK14856 nhaA pH-dependent sod 97.8 0.0089 1.9E-07 70.4 27.1 268 99-410 70-393 (438)
22 COG0786 GltS Na+/glutamate sym 97.8 0.016 3.5E-07 66.9 27.5 142 32-186 6-155 (404)
23 PRK09560 nhaA pH-dependent sod 97.7 0.0073 1.6E-07 70.1 24.3 269 99-409 61-347 (389)
24 PRK14855 nhaA pH-dependent sod 97.6 0.016 3.5E-07 68.0 25.7 264 99-409 65-377 (423)
25 PRK14854 nhaA pH-dependent sod 97.6 0.0071 1.5E-07 69.9 22.1 267 99-409 58-342 (383)
26 PRK09561 nhaA pH-dependent sod 97.5 0.008 1.7E-07 69.7 20.3 268 99-409 61-345 (388)
27 PF03616 Glt_symporter: Sodium 97.4 0.17 3.6E-06 59.5 30.2 95 31-136 3-100 (368)
28 PF06965 Na_H_antiport_1: Na+/ 97.4 0.0011 2.5E-08 76.5 11.6 269 99-409 57-345 (378)
29 COG3004 NhaA Na+/H+ antiporter 97.2 0.037 8E-07 62.3 20.9 265 104-405 69-348 (390)
30 PF03601 Cons_hypoth698: Conse 97.1 0.18 3.9E-06 57.7 25.0 148 55-215 22-169 (305)
31 PRK03562 glutathione-regulated 96.5 0.075 1.6E-06 66.5 18.3 72 101-175 269-340 (621)
32 PRK03659 glutathione-regulated 96.5 0.09 1.9E-06 65.6 18.5 74 100-176 265-338 (601)
33 TIGR00698 conserved hypothetic 96.3 3.2 7E-05 48.2 31.9 148 55-215 27-175 (335)
34 TIGR00210 gltS sodium--glutama 95.7 6.7 0.00014 46.7 36.0 118 32-165 4-129 (398)
35 PLN03159 cation/H(+) antiporte 95.5 0.25 5.4E-06 63.9 16.2 72 101-175 323-396 (832)
36 PRK10669 putative cation:proto 95.4 0.57 1.2E-05 58.0 18.6 73 101-176 277-349 (558)
37 COG0475 KefB Kef-type K+ trans 94.3 1.2 2.6E-05 52.9 16.6 117 46-177 230-347 (397)
38 PF05684 DUF819: Protein of un 94.1 16 0.00035 43.3 28.9 84 58-153 24-107 (378)
39 PF13593 DUF4137: SBF-like CPA 93.7 12 0.00026 43.2 22.7 144 96-245 27-179 (313)
40 PF01758 SBF: Sodium Bile acid 93.1 3.6 7.8E-05 43.6 16.2 109 104-218 2-114 (187)
41 TIGR03802 Asp_Ala_antiprt aspa 93.0 0.9 1.9E-05 56.4 13.1 131 37-186 12-146 (562)
42 COG0679 Predicted permeases [G 92.8 22 0.00048 40.8 28.5 140 283-453 168-307 (311)
43 TIGR00832 acr3 arsenical-resis 92.2 27 0.00059 40.5 23.3 101 104-212 47-153 (328)
44 COG2855 Predicted membrane pro 91.7 31 0.00067 40.1 27.4 146 54-215 32-178 (334)
45 COG0385 Predicted Na+-dependen 90.7 26 0.00057 40.4 20.3 147 101-253 39-190 (319)
46 PF06826 Asp-Al_Ex: Predicted 90.7 2.7 5.9E-05 44.1 11.6 126 41-181 3-135 (169)
47 cd00038 CAP_ED effector domain 89.9 0.49 1.1E-05 43.7 4.9 57 728-784 59-115 (115)
48 TIGR03082 Gneg_AbrB_dup membra 89.9 13 0.00029 38.3 15.9 124 43-186 3-130 (156)
49 PRK03818 putative transporter; 89.6 3.6 7.8E-05 51.0 13.4 120 33-167 4-130 (552)
50 PRK04972 putative transporter; 89.0 4.3 9.3E-05 50.4 13.4 128 37-183 14-145 (558)
51 PRK12460 2-keto-3-deoxyglucona 88.6 5.8 0.00013 45.4 12.9 71 105-178 197-269 (312)
52 COG0798 ACR3 Arsenite efflux p 88.6 55 0.0012 38.1 26.0 180 60-256 18-204 (342)
53 PRK12460 2-keto-3-deoxyglucona 88.4 53 0.0012 37.9 20.3 81 105-186 50-131 (312)
54 TIGR00841 bass bile acid trans 88.1 53 0.0011 37.3 21.9 88 106-198 14-106 (286)
55 PF03601 Cons_hypoth698: Conse 88.0 12 0.00026 43.0 15.3 164 262-456 3-172 (305)
56 PF03956 DUF340: Membrane prot 86.7 2.2 4.9E-05 45.6 7.9 87 64-168 3-94 (191)
57 PF00027 cNMP_binding: Cyclic 86.3 0.5 1.1E-05 42.4 2.4 50 729-778 42-91 (91)
58 PF03812 KdgT: 2-keto-3-deoxyg 86.2 58 0.0013 37.5 18.9 84 105-189 50-139 (314)
59 TIGR00210 gltS sodium--glutama 84.3 35 0.00077 40.7 17.0 167 34-211 218-393 (398)
60 TIGR00946 2a69 he Auxin Efflux 84.3 84 0.0018 36.0 27.2 141 282-454 181-321 (321)
61 PRK05326 potassium/proton anti 83.4 11 0.00023 47.0 12.8 65 100-166 274-338 (562)
62 COG2431 Predicted membrane pro 83.1 18 0.00039 40.7 12.8 87 61-166 108-199 (297)
63 TIGR00698 conserved hypothetic 82.2 38 0.00083 39.5 15.8 37 262-298 7-47 (335)
64 COG2855 Predicted membrane pro 82.1 28 0.00061 40.4 14.4 148 278-457 33-182 (334)
65 TIGR00844 c_cpa1 na(+)/h(+) an 81.9 9.9 0.00022 48.8 11.7 19 278-296 34-52 (810)
66 PF03390 2HCT: 2-hydroxycarbox 80.3 1.4E+02 0.0031 35.9 26.0 106 34-146 28-140 (414)
67 PF03390 2HCT: 2-hydroxycarbox 80.1 14 0.00031 44.0 11.5 136 37-184 252-391 (414)
68 TIGR00831 a_cpa1 Na+/H+ antipo 79.9 12 0.00026 46.2 11.5 77 641-719 444-520 (525)
69 PF05145 AmoA: Putative ammoni 78.3 27 0.00058 40.4 13.0 109 40-163 157-267 (318)
70 PF03616 Glt_symporter: Sodium 78.2 38 0.00083 40.0 14.4 115 34-162 220-339 (368)
71 COG2985 Predicted permease [Ge 77.5 7.6 0.00016 46.7 8.2 86 102-188 61-149 (544)
72 TIGR00783 ccs citrate carrier 77.0 13 0.00027 43.5 9.7 117 58-184 203-324 (347)
73 PRK04972 putative transporter; 76.5 25 0.00053 43.9 12.8 131 39-184 385-527 (558)
74 COG3493 CitS Na+/citrate sympo 76.3 1.7E+02 0.0037 34.7 27.4 41 100-140 111-151 (438)
75 COG1346 LrgB Putative effector 76.1 98 0.0021 34.2 15.4 133 37-184 8-143 (230)
76 PRK04288 antiholin-like protei 73.7 1.5E+02 0.0033 32.9 23.1 37 115-151 82-118 (232)
77 TIGR00400 mgtE Mg2+ transporte 72.8 36 0.00078 41.2 12.7 20 56-75 282-301 (449)
78 PF05982 DUF897: Domain of unk 72.4 43 0.00092 38.8 12.2 124 60-197 177-302 (327)
79 TIGR02454 CbiQ_TIGR cobalt ABC 72.4 47 0.001 35.1 12.2 26 167-192 110-135 (198)
80 COG3180 AbrB Putative ammonia 71.2 69 0.0015 37.6 13.7 129 19-163 170-300 (352)
81 COG3493 CitS Na+/citrate sympo 68.2 58 0.0013 38.4 12.1 85 99-184 322-410 (438)
82 TIGR01625 YidE_YbjL_dupl AspT/ 67.6 46 0.001 34.5 10.3 111 61-183 23-138 (154)
83 PF05145 AmoA: Putative ammoni 64.6 2.7E+02 0.0059 32.2 30.1 60 124-189 52-111 (318)
84 TIGR03802 Asp_Ala_antiprt aspa 62.5 54 0.0012 41.0 11.6 109 60-183 416-531 (562)
85 PRK11753 DNA-binding transcrip 62.5 13 0.00028 39.4 5.5 55 732-786 66-121 (211)
86 KOG1650 Predicted K+/H+-antipo 62.3 62 0.0014 42.0 12.3 74 100-177 310-383 (769)
87 PF09851 SHOCT: Short C-termin 62.2 14 0.0003 27.9 3.9 27 689-715 3-29 (31)
88 TIGR00932 2a37 transporter, mo 62.1 1.3E+02 0.0028 33.6 13.5 59 274-339 9-67 (273)
89 TIGR02865 spore_II_E stage II 60.8 3E+02 0.0065 35.9 18.1 20 233-252 191-210 (764)
90 TIGR00946 2a69 he Auxin Efflux 60.1 1.7E+02 0.0036 33.6 14.3 76 57-144 180-255 (321)
91 PRK03818 putative transporter; 59.7 91 0.002 38.9 12.8 107 62-181 403-515 (552)
92 PLN03192 Voltage-dependent pot 58.9 88 0.0019 40.9 13.1 60 734-793 444-503 (823)
93 PRK09903 putative transporter 58.3 3.3E+02 0.0072 31.2 29.1 139 283-454 173-311 (314)
94 PRK01658 holin-like protein; V 56.0 76 0.0017 31.7 9.1 46 103-151 68-113 (122)
95 TIGR00808 malonate_madM malona 55.3 1.9E+02 0.004 31.6 12.1 104 37-149 18-128 (254)
96 PF04172 LrgB: LrgB-like famil 53.1 3.5E+02 0.0075 29.8 15.4 34 118-151 69-102 (215)
97 PF13194 DUF4010: Domain of un 52.6 3.5E+02 0.0075 29.6 16.8 59 145-205 10-68 (211)
98 PF00999 Na_H_Exchanger: Sodiu 51.2 8 0.00017 45.1 1.7 109 52-176 227-339 (380)
99 PRK04125 murein hydrolase regu 50.7 1.1E+02 0.0025 31.3 9.5 39 114-152 79-117 (141)
100 PRK05274 2-keto-3-deoxyglucona 50.7 4.7E+02 0.01 30.6 17.4 80 106-188 53-140 (326)
101 TIGR00659 conserved hypothetic 49.2 4.1E+02 0.0089 29.5 19.9 35 116-150 77-111 (226)
102 KOG3826 Na+/H+ antiporter [Ino 48.5 17 0.00037 40.0 3.4 110 57-178 125-234 (252)
103 PRK09392 ftrB transcriptional 47.5 33 0.00071 37.2 5.7 58 734-791 77-134 (236)
104 PRK11660 putative transporter; 47.0 6.8E+02 0.015 31.4 18.2 79 116-196 272-361 (568)
105 KOG3599 Ca2+-modulated nonsele 46.3 8.3E+02 0.018 32.2 19.8 31 186-216 540-570 (798)
106 PRK01821 hypothetical protein; 46.2 1.3E+02 0.0029 30.5 9.1 46 103-151 73-118 (133)
107 PF03547 Mem_trans: Membrane t 44.8 5.6E+02 0.012 29.8 26.1 53 283-336 244-296 (385)
108 TIGR00400 mgtE Mg2+ transporte 44.4 6.6E+02 0.014 30.5 16.9 14 234-247 360-373 (449)
109 COG1380 Putative effector of m 40.6 1.3E+02 0.0029 30.3 8.1 35 118-152 81-115 (128)
110 PF02268 TFIIA_gamma_N: Transc 39.7 1E+02 0.0022 26.0 5.9 36 538-573 12-47 (49)
111 COG3329 Predicted permease [Ge 39.5 6.7E+02 0.015 29.1 17.3 26 193-218 210-235 (372)
112 PF11700 ATG22: Vacuole efflux 37.6 8.5E+02 0.019 29.8 22.0 34 178-211 272-305 (477)
113 PF10925 DUF2680: Protein of u 37.0 1.6E+02 0.0034 25.8 6.9 47 529-575 8-54 (59)
114 PRK05274 2-keto-3-deoxyglucona 36.8 90 0.0019 36.4 7.2 39 105-143 204-242 (326)
115 PF01384 PHO4: Phosphate trans 36.7 7.4E+02 0.016 28.8 16.7 72 173-255 76-148 (326)
116 PRK10712 PTS system fructose-s 36.2 9E+02 0.02 30.5 16.1 21 233-253 316-336 (563)
117 PRK09903 putative transporter 35.9 4.8E+02 0.01 29.9 13.0 27 99-125 201-227 (314)
118 TIGR00793 kdgT 2-keto-3-deoxyg 35.5 4.7E+02 0.01 30.4 12.2 40 104-143 201-240 (314)
119 PF03812 KdgT: 2-keto-3-deoxyg 35.4 3.3E+02 0.0072 31.6 11.2 40 104-143 201-240 (314)
120 PF06738 DUF1212: Protein of u 35.2 2.6E+02 0.0057 29.4 10.1 55 239-294 134-188 (193)
121 PHA01351 putative minor struct 35.2 3.2E+02 0.0069 34.7 11.4 46 671-716 561-606 (1070)
122 COG2985 Predicted permease [Ge 34.9 1.9E+02 0.004 35.5 9.4 102 61-179 397-507 (544)
123 COG1301 GltP Na+/H+-dicarboxyl 34.9 9E+02 0.02 29.3 20.3 89 118-216 67-158 (415)
124 TIGR03697 NtcA_cyano global ni 33.5 79 0.0017 32.8 5.7 55 735-791 42-100 (193)
125 PHA01351 putative minor struct 33.3 1E+03 0.022 30.6 15.2 110 621-730 540-681 (1070)
126 TIGR00815 sulP high affinity s 32.7 1.1E+03 0.023 29.5 22.4 79 116-196 252-341 (563)
127 COG3329 Predicted permease [Ge 32.1 82 0.0018 36.1 5.6 136 51-198 208-347 (372)
128 TIGR00793 kdgT 2-keto-3-deoxyg 32.0 1.4E+02 0.0031 34.3 7.5 115 106-225 51-171 (314)
129 PF06912 DUF1275: Protein of u 32.0 6.6E+02 0.014 26.8 12.9 30 188-217 2-32 (209)
130 COG0679 Predicted permeases [G 31.8 6.1E+02 0.013 29.1 13.0 78 57-146 166-244 (311)
131 PF09317 DUF1974: Domain of un 31.5 2.3E+02 0.005 32.4 9.2 42 673-717 233-274 (284)
132 PRK10402 DNA-binding transcrip 31.5 88 0.0019 33.8 5.8 51 735-785 80-130 (226)
133 PRK10263 DNA translocase FtsK; 29.9 9.9E+02 0.021 33.2 15.6 14 281-294 141-154 (1355)
134 COG0786 GltS Na+/glutamate sym 29.6 7E+02 0.015 30.0 12.7 157 37-205 224-390 (404)
135 PF10925 DUF2680: Protein of u 28.8 92 0.002 27.2 4.2 33 684-716 14-46 (59)
136 PRK10263 DNA translocase FtsK; 28.8 4.9E+02 0.011 35.9 12.6 19 278-296 59-77 (1355)
137 PF05982 DUF897: Domain of unk 28.7 1E+03 0.022 28.0 17.1 28 191-218 168-195 (327)
138 COG1230 CzcD Co/Zn/Cd efflux s 27.7 1E+03 0.022 27.6 15.6 22 195-216 54-75 (296)
139 PF00375 SDF: Sodium:dicarboxy 26.9 9.4E+02 0.02 28.5 13.8 99 106-206 188-298 (390)
140 KOG4368 Predicted RNA binding 25.8 8.3E+02 0.018 30.6 12.6 26 691-716 210-235 (757)
141 PRK10712 PTS system fructose-s 25.4 1.4E+03 0.031 28.7 17.2 16 60-75 314-329 (563)
142 COG1177 PotC ABC-type spermidi 24.9 1.1E+03 0.023 26.9 16.9 89 121-210 62-156 (267)
143 PF00950 ABC-3: ABC 3 transpor 24.8 1E+03 0.022 26.7 19.8 87 195-294 30-119 (257)
144 PF03977 OAD_beta: Na+-transpo 24.2 7.4E+02 0.016 29.2 11.4 106 138-256 195-302 (360)
145 KOG4567 GTPase-activating prot 23.8 4E+02 0.0087 31.0 9.1 91 537-632 228-329 (370)
146 KOG2290 Rhomboid family protei 23.0 4.7E+02 0.01 31.8 9.7 26 308-333 536-561 (652)
147 PF12476 DUF3696: Protein of u 23.0 37 0.00081 28.5 0.8 15 930-944 28-42 (52)
148 PRK11283 gltP glutamate/aspart 22.6 6.2E+02 0.014 30.7 11.3 46 180-225 291-340 (437)
149 PF04632 FUSC: Fusaric acid re 22.6 1.1E+03 0.023 29.8 13.9 125 201-334 364-488 (650)
150 COG5336 Uncharacterized protei 22.4 2.5E+02 0.0053 27.7 6.1 34 232-269 51-84 (116)
151 PRK08633 2-acyl-glycerophospho 22.3 2E+03 0.043 29.2 28.7 16 44-59 61-76 (1146)
152 COG2905 Predicted signal-trans 22.1 8.8E+02 0.019 30.5 12.1 139 560-716 382-552 (610)
153 PF14591 AF0941-like: AF0941-l 21.6 2.2E+02 0.0047 28.7 5.7 38 679-716 34-71 (127)
154 PRK11753 DNA-binding transcrip 20.9 1.7E+02 0.0037 30.8 5.5 44 801-845 6-52 (211)
155 KOG2718 Na+-bile acid cotransp 20.7 3.5E+02 0.0076 32.2 8.3 104 104-210 117-221 (371)
156 PRK10711 hypothetical protein; 20.3 1.2E+03 0.026 25.9 18.1 36 115-150 77-112 (231)
157 PRK01663 C4-dicarboxylate tran 20.3 1.6E+03 0.034 27.3 18.9 16 201-216 149-164 (428)
158 COG3671 Predicted membrane pro 20.2 7.3E+02 0.016 24.9 8.9 24 309-332 65-88 (125)
No 1
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=9.4e-61 Score=572.82 Aligned_cols=502 Identities=24% Similarity=0.358 Sum_probs=390.6
Q ss_pred HHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHH
Q 001423 43 SLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI 122 (1079)
Q Consensus 43 lLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~l 122 (1079)
+++.+.+...+++|+++|++++++++|+++|+...+ . ..+++|++++.+++|+++|.+|+++|++.+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~-~------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLL-P------------EVPLDREIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcccc-C------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 334444556778999999999999999999986321 0 145789999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 001423 123 KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDG 202 (1079)
Q Consensus 123 rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa 202 (1079)
|+++++++.+|+++++++++++|+.++++ + ++||..|+++|+++|||||+++.+++++.++|+++.++++|||++||+
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~ 150 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDG 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcch
Confidence 99999999999999999999999999884 3 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhc
Q 001423 203 TAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGAD 281 (1079)
Q Consensus 203 ~AIVLf~l~l~~~~~-~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~lg 281 (1079)
+++++|.++..+..+ +.+++......+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|
T Consensus 151 ~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg 229 (525)
T TIGR00831 151 AALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFH 229 (525)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhC
Confidence 999999999988764 55666554444445667888999999999887877766778889999999999999999 7899
Q ss_pred ccchHHHHHHHHhhhhcccc-cccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccc--chHH---HH
Q 001423 282 VSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHG--NSWG---YL 355 (1079)
Q Consensus 282 ~SGVLAvvvaGLvls~~~r~-~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~--~~~~---~l 355 (1079)
.||++|+|++|++++++++. +.+++.+...++||+.+++++|+++|+++|+.++.............. ..+. ..
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999987766 677788888999999999999999999999999753221100000000 0111 12
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhccc-CCCcccccccccchHhhhh
Q 001423 356 ILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTG 432 (1079)
Q Consensus 356 lll~v~ilv~R~l~v~~l--~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~-~~~~~~~~~~~~l~vf~t~ 432 (1079)
++++..+.+.|+++++.. .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++ .++.++++++
T Consensus 310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~ 386 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAA 386 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHH
Confidence 334445566777665432 1222333456789999999999999999999999999652 333443 3578999999
Q ss_pred hhhhHHHhhhhhhHHHHHHHccCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCChHHH-HHHHHHhhccCCC
Q 001423 433 GIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGV 511 (1079)
Q Consensus 433 gVVllTLlV~G~tl~~Llr~Lgl~~~s~~k~~i~~~~~~~~~~~a~~~l~~l~~d~~l~~~~~~~v-~~y~~~l~~~e~~ 511 (1079)
++|++|+++||+|+|+++|++++++.++. +.....++..+.+.+.+.++++.+++..+++..+.+ ++|..++++.+.+
T Consensus 387 ~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (525)
T TIGR00831 387 GVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRAD 465 (525)
T ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999877643 333456677788888888888776654433323333 4565555443221
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001423 512 PMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDE 568 (1079)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~e~r~rll~~~r~~~~~l~~~g~Is~~~~~~Ll~~vd~ 568 (1079)
. .+..+ +...+.....++|++++++||+.+.+++++|+||+++++.+++++|.
T Consensus 466 ~---~~~~~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~ 518 (525)
T TIGR00831 466 G---EEKIR-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDL 518 (525)
T ss_pred c---ccchh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhH
Confidence 1 00000 00011112346888899999999999999999999999999888765
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=8.3e-55 Score=522.00 Aligned_cols=403 Identities=27% Similarity=0.468 Sum_probs=341.5
Q ss_pred CCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHH
Q 001423 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (1079)
Q Consensus 58 ~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gv 137 (1079)
++|++++++++|+++|+...+... ++. ..++|++|+.++||+|+|++|+++|++.+++++++++.+|++|+
T Consensus 34 ~lP~s~llil~GlllG~i~~~~~~--------~~~-~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gv 104 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGIIKASPH--------IDP-PTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGT 104 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCC--------Ccc-CCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999986443221 111 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc------CCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 138 MISTFFLGAALKLTFP------YDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (1079)
Q Consensus 138 lit~~lvg~~l~~l~p------~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~ 211 (1079)
+++++++|+.+|++.+ .+++|..|+++||++|||||++|.++++++++|+++.++++|||++||++|+++|.++
T Consensus 105 lit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~gESllNDavaIVLf~~~ 184 (559)
T TIGR00840 105 LINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTF 184 (559)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheehhhhhhccHHHHHHHHH
Confidence 9999999999987643 2579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcc--CCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhcccch
Q 001423 212 FQMVLG--KSFGWGA----IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGV 285 (1079)
Q Consensus 212 l~~~~~--~~~s~~~----i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~lg~SGV 285 (1079)
..+... +..++.. +..|+. ..+||+++|+++|++..+++++..+++..+..++++++|++|++| |.+|+||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~f~~-~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y~lA-E~l~~SGi 262 (559)
T TIGR00840 185 IKFHKTADEPVTIVDVFEGCASFFV-VTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHLSGI 262 (559)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HHhccchH
Confidence 988752 3344332 233443 467789999999999998888876667789999999999999999 78999999
Q ss_pred HHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHHHHHHH
Q 001423 286 LTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVS 365 (1079)
Q Consensus 286 LAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~ 365 (1079)
+|+++||++++++.+.+.+++.+...++||+++++++++++|+++|+.+.... +..+|.++++.+++++++
T Consensus 263 LAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~---------~~~~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN---------HEWNWAFVVATLSFCVIY 333 (559)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------hhHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888999999999999999999999999874311 123455666667788999
Q ss_pred HHHHHHHHHHHHhhh-cCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHHhhhhh
Q 001423 366 RLFVVGTLYPVLRNF-GYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGS 444 (1079)
Q Consensus 366 R~l~v~~l~p~L~~~-g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTLlV~G~ 444 (1079)
|+++++...++.+.+ +.+.+|+|+++++|+|+||++++++|+.++... . ..++.+++.++++|++|+++||+
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa~aLAl~l~~~~----~---~~~~~i~~~t~~VVl~TvlvqG~ 406 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKI----F---PYKFLFVTTTLVVVFFTVIFQGG 406 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheeeeccccHHHHHHHHhCCCCC----c---chHHHHHHHHHeeehHHHHHHHh
Confidence 999998877776654 357899999999999999999999999876532 1 13578899999999999999999
Q ss_pred hHHHHHHHccCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001423 445 TTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDD 487 (1079)
Q Consensus 445 tl~~Llr~Lgl~~~s~~k~~i~~~~~~~~~~~a~~~l~~l~~d 487 (1079)
|++|++++|++++.++.++.+.+....+..+.....+|+....
T Consensus 407 T~~pl~~~L~l~~~~~~~~~~~e~~~~~~~~~~~~~ie~~~g~ 449 (559)
T TIGR00840 407 TIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDICGQ 449 (559)
T ss_pred hHHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHhHHHHHhhh
Confidence 9999999999998887766666665666667766677766643
No 3
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=477.24 Aligned_cols=435 Identities=33% Similarity=0.504 Sum_probs=365.6
Q ss_pred cccccchhhhc--cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcccC---CcHHHHHHHHHHHhcccccccccccCc
Q 001423 11 LPYRTLEEEQK--SGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTR---VPYTVALLIIGIALGSLEYGTSHQLGK 85 (1079)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~~~~lL~l~ilLllg~~~~~L~rrl~---lP~~V~lil~GIlLGp~~~g~~~~Lg~ 85 (1079)
.+|+..+.+.+ +..++.+.++.....+++.+.+|+++++++|++++.| +|+++..+++|+++|.+.....++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~ 88 (575)
T KOG1965|consen 9 LSYDSLEIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSS 88 (575)
T ss_pred CCCccchhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCccc
Confidence 56665433333 3344444467788899999999999999999999999 999999999999999986655443333
Q ss_pred ccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----ccCCCcHHHH
Q 001423 86 IGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT----FPYDWSWKTS 161 (1079)
Q Consensus 86 l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l----~p~~ls~~~A 161 (1079)
.+. +. ..++|+.|+.++|||++|++|++++.+.+++|+.++..+|++|++++++++|..++++ ++++|+|..|
T Consensus 89 ~~~--~~-~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~ 165 (575)
T KOG1965|consen 89 RGK--RI-LVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDC 165 (575)
T ss_pred ccc--ee-EEecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHH
Confidence 222 22 3688999999999999999999999999999999999999999999999999999988 6678999999
Q ss_pred HHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHH--HHHHHHHHHHHHHHH
Q 001423 162 LLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGA--IIKFLAQVSLGAVGM 239 (1079)
Q Consensus 162 LLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~--i~~fl~~v~lGgili 239 (1079)
+++||++|+||||+|++|++++++.+.+..+++|||++|||++||+|+.+.....+...++.. ++..++.+++|++.+
T Consensus 166 L~fGaliSATDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~l 245 (575)
T KOG1965|consen 166 LAFGALISATDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGL 245 (575)
T ss_pred HHHhhHhcccCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988766555544 777788899999999
Q ss_pred HHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHH
Q 001423 240 GLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM 317 (1079)
Q Consensus 240 Glv~G~l~~~~l~~~~~--d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ 317 (1079)
|+++|.+...++|++.. ++..|..+.+.++|.+|++| |.+|+||++++++||+++++|.+.+++++++...+++|.+
T Consensus 246 Gv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY~sY~lA-E~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~ 324 (575)
T KOG1965|consen 246 GVAIGLISALVLKFLYLRRTPSLESALMLLMSYLSYLLA-EGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRT 324 (575)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999998764 78899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC----CChHHHHHH
Q 001423 318 VAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-YG----LEWKEAIIL 392 (1079)
Q Consensus 318 ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g-~~----ls~re~~vl 392 (1079)
+++++++++|+++|+.+- ...... +....+++...++++++|++-++.+..+++..+ .+ .+.++...+
T Consensus 325 lsflAEtfIF~Y~Gl~~f----~~~k~~---~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~ 397 (575)
T KOG1965|consen 325 LSFLAETFIFIYLGLSAF----DFQKHV---YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIM 397 (575)
T ss_pred HHHHHHHHHHHHHhHHHh----ccccee---eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHh
Confidence 999999999999998542 111110 111345677788899999999988877765443 23 688999999
Q ss_pred Hhhh-hHHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHHhhhhhhHHHHHHHccCCCccHHH
Q 001423 393 VWSG-LRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 462 (1079)
Q Consensus 393 ~wgG-lRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTLlV~G~tl~~Llr~Lgl~~~s~~k 462 (1079)
+|.| +|||+++|+|+--..+. + +..++.+...|..+|++|+++.|.++.|++++|........+
T Consensus 398 ~w~g~lRGAvs~ALa~~~~~~~---~---~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 398 WWAGGLRGAVSFALALGDFTDS---P---HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred HhhhhhhHHHHHHHHhhhcccc---c---cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 9976 99999999998533221 0 112355666677799999999999999999999987665443
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-49 Score=463.24 Aligned_cols=405 Identities=27% Similarity=0.465 Sum_probs=345.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHH
Q 001423 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFE 112 (1079)
Q Consensus 33 ~~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~ 112 (1079)
....++...++++++.++..+.+|+.+|.....++.|++.|+...+.. ... ...+++.+..+++|+++|.
T Consensus 4 ~~~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~------~~~----~~~~~el~~~l~l~ilLf~ 73 (429)
T COG0025 4 SLMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLI------SPD----LELDPELFLVLFLAILLFA 73 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccc------ccc----ccCChHHHHHHHHHHHHHH
Confidence 345566777888899999999999999999999999999997643322 111 4678999999999999999
Q ss_pred HhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHH
Q 001423 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTI 192 (1079)
Q Consensus 113 aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~L 192 (1079)
+|+++|++.+|+++++++.++++++++|++.+|+.+|+++| +++|..|+++||++|||||+++.+++++.++|+|+.++
T Consensus 74 ~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~i 152 (429)
T COG0025 74 GGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTI 152 (429)
T ss_pred hHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHH
Q 001423 193 IEGESLMNDGTAIVVYQLFFQMVL-GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTLA 267 (1079)
Q Consensus 193 IeGESLlNDa~AIVLf~l~l~~~~-~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~----d~~~ei~ltLa 267 (1079)
++|||++||++++++|.+++++.. ++.++.......+...++||+++|++.|++..+.+++... +...+..++++
T Consensus 153 L~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~ 232 (429)
T COG0025 153 LEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLL 232 (429)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 999999999999999999999887 4556655555555567788899999999999888887655 47789999999
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 001423 268 VSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQ 346 (1079)
Q Consensus 268 l~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~-~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~ 346 (1079)
.++.+|.+| |.+|.||++|++++|++.++..+.+..+ ..+...++||+.+.+++|.++|+++|.+++...+.
T Consensus 233 ~~~~~~~~a-~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~------ 305 (429)
T COG0025 233 LAFAAYLLA-EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL------ 305 (429)
T ss_pred HHHHHHHHH-HHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------
Confidence 999999999 8899999999999999987333333333 44788899999999999999999999999875442
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCccccccccc
Q 001423 347 NHGNSWGYLILLYIFVQVSRLFVVGTLYPVLR-NFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGT 425 (1079)
Q Consensus 347 ~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~-~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~ 425 (1079)
...+..++++.++++++|+++++..++... ..+...+|+++++++|+|+||++++++|+++|....+ ..++
T Consensus 306 --~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~RG~vsla~al~~p~~~~~------~~~~ 377 (429)
T COG0025 306 --ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLELPG------PARE 377 (429)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhcccccHHHHHHHHHchhhccc------hhhh
Confidence 122566778888999999999976655432 3334579999999999999999999999999875422 2357
Q ss_pred chHhhhhhhhhHHHhhhhhhHHHHHHHccCCCccHHHH
Q 001423 426 LFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKR 463 (1079)
Q Consensus 426 l~vf~t~gVVllTLlV~G~tl~~Llr~Lgl~~~s~~k~ 463 (1079)
.++++++++|++|+++||.++|++.+++...+.+..++
T Consensus 378 ~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~ 415 (429)
T COG0025 378 LILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAK 415 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhh
Confidence 88999999999999999999999999999876665444
No 5
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=447.78 Aligned_cols=404 Identities=25% Similarity=0.457 Sum_probs=350.9
Q ss_pred CcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 001423 59 VPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVM 138 (1079)
Q Consensus 59 lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvl 138 (1079)
+|....||++|+++|...++..+ .. ...++|++|+...|||+++++|+.|+-+.|..|++.|++.|++|++
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~----~~-----~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi 138 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALAT----IA-----PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTI 138 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhc----cc-----cccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHH
Confidence 79999999999999987654332 11 1467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc---CC--CcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 139 ISTFFLGAALKLTFP---YD--WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1079)
Q Consensus 139 it~~lvg~~l~~l~p---~~--ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~ 213 (1079)
+.++.+|..++.+.+ .+ .++..-|+||+++|+.|||||.++++|+++++-+.-++.||||+||++.+|+|.++..
T Consensus 139 ~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFGESLlNDaVTVVLY~~f~s 218 (670)
T KOG1966|consen 139 WNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFGESLLNDAVTVVLYNMFIS 218 (670)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeehhhhhcCceEEehHHHHHH
Confidence 999999998886643 23 4588999999999999999999999999999999999999999999999999999999
Q ss_pred HHccC--CCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 001423 214 MVLGK--SFGWG----AIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLT 287 (1079)
Q Consensus 214 ~~~~~--~~s~~----~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~lg~SGVLA 287 (1079)
++.-| ...+. .++.|++ +.+||+++|+++|++..+..|+..+-...+..+.+.+||++|+.| |.+|+||++|
T Consensus 219 f~~ig~~n~~~~d~~~G~~sFfV-VslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYlaYL~a-Em~hlSgIlA 296 (670)
T KOG1966|consen 219 FVEIGSDNLTTIDYVLGVVSFFV-VSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAYLTA-EMFHLSGILA 296 (670)
T ss_pred HHHhcccceeEeeeecceeEEEE-EecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHHHHH-HHHHHHHHHH
Confidence 87644 33222 2445554 678999999999999988888887777899999999999999999 9999999999
Q ss_pred HHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Q 001423 288 VMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (1079)
Q Consensus 288 vvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~ 367 (1079)
..+||+.+..|.+.+++.++...+..|..+++...++++|+++|+..... .+.++|.++.+.++++++.|+
T Consensus 297 ii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~---------~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 297 IIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS---------NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC---------cceeehhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987431 245678888889999999999
Q ss_pred HHHHHHHHHHhhhc-CCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHHhhhhhhH
Q 001423 368 FVVGTLYPVLRNFG-YGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTT 446 (1079)
Q Consensus 368 l~v~~l~p~L~~~g-~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTLlV~G~tl 446 (1079)
++++.+++++++++ .+++..++++|++||+|||++.+|...++... ++ ..++++..|..||++|+++||+|+
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLRGAiaF~LV~lid~~~-----vp--~K~~Fvttti~VIfFTVflQGiTI 440 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLRGAIAFGLVVLIDGAK-----VP--AKNMFVTTTIAVIFFTVFLQGITI 440 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecCCcchhhheeEEEEecccc-----CC--cccceEeeeeEEEeeeeeecccch
Confidence 99999999988765 46788999999999999999999999888542 11 236777788889999999999999
Q ss_pred HHHHHHccCCCccHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001423 447 QYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEE 489 (1079)
Q Consensus 447 ~~Llr~Lgl~~~s~~k~~i~~~~~~~~~~~a~~~l~~l~~d~~ 489 (1079)
+|+++||+.++....++.+.+....+..+..+..+|+....+.
T Consensus 441 kplvk~L~Vk~~~~~~~~m~e~i~~~~~dhlm~gIEDi~G~~g 483 (670)
T KOG1966|consen 441 KPLVKFLKVKRKNKRDPTMNEEIYNRLLDHLMAGIEDIAGQKG 483 (670)
T ss_pred HHHHHHHccccccccCchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999988877776666667788888888888776543
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.4e-43 Score=429.30 Aligned_cols=391 Identities=23% Similarity=0.316 Sum_probs=317.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHH
Q 001423 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (1079)
Q Consensus 32 ~~~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF 111 (1079)
+.+..++.++++++++.++..+++|+++|.+++++++|+++||..+|... .+. ....+.+..+++++++|
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~-----~~~-----~~~~~~i~~l~L~~iLF 72 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ-----FDN-----YPLAYLVGNLALAVILF 72 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc-----cCc-----HHHHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999997543211 000 11246788999999999
Q ss_pred HHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC--CCchH
Q 001423 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG--ASKKL 189 (1079)
Q Consensus 112 ~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg--l~~rL 189 (1079)
.+|+++|++.+|+++++++.+|+.|++++++++|+++++++ +++|..|+++|+++++|||++|.+++++.+ +++++
T Consensus 73 ~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~--g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 73 DGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV 150 (562)
T ss_pred cCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence 99999999999999999999999999999999898888776 789999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHH
Q 001423 190 NTIIEGESLMNDGTAIVVYQLFFQMVLGKS--FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN-DTVIEIALTL 266 (1079)
Q Consensus 190 ~~LIeGESLlNDa~AIVLf~l~l~~~~~~~--~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~-d~~~ei~ltL 266 (1079)
++++++||++||+++++++.+++.+..++. .++..+..++. .+++++++|+++|++..+++++... +...+..+++
T Consensus 151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l 229 (562)
T PRK05326 151 ASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQ-QFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVL 229 (562)
T ss_pred HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 999999999999999999999988776544 33444444444 4455677899999988888877643 2446678889
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 001423 267 AVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQ 346 (1079)
Q Consensus 267 al~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~ 346 (1079)
++++++|++| |.+|.||++|++++|+++++.. ...+..++++|+.+++++++++|+++|+.+++..+.
T Consensus 230 ~~~l~~~~~a-~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~------ 297 (562)
T PRK05326 230 AGALLIFALT-AALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL------ 297 (562)
T ss_pred HHHHHHHHHH-HHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------
Confidence 9999999998 8899999999999999998632 223567899999999999999999999999875431
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccc
Q 001423 347 NHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTL 426 (1079)
Q Consensus 347 ~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l 426 (1079)
...|..+++.+++++++|+++++ ++....+++|||+.+++|+|+||++++++|....... .. ..+.
T Consensus 298 --~~~~~~l~i~~~l~~vaR~l~v~-----l~~~~~~~~~~e~~~i~~~g~RG~v~i~lA~~~~~~~----~~---~~~~ 363 (562)
T PRK05326 298 --DIALPALLLALFLILVARPLAVF-----LSLLPFRFNLREKLFISWVGLRGAVPIVLATFPMMAG----LP---NAQL 363 (562)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH-----HHHccCCCCHhhhheeeeecchhHHHHHHHHHHHHcC----CC---chhh
Confidence 11233333445567899999984 3344558899999999999999999999997533221 11 1234
Q ss_pred hHhhhhhhhhHHHhhhhhhHHHHHHHccCCCccHH
Q 001423 427 FVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSAT 461 (1079)
Q Consensus 427 ~vf~t~gVVllTLlV~G~tl~~Llr~Lgl~~~s~~ 461 (1079)
+...++.+|++|+++||.+++++.|++++..+++.
T Consensus 364 ~~~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 364 IFNVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred hhhhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 44566779999999999999999999999877654
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=1.5e-41 Score=409.81 Aligned_cols=395 Identities=17% Similarity=0.179 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcC
Q 001423 38 IFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAM 117 (1079)
Q Consensus 38 L~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~l 117 (1079)
++.+++++.+.++.++.+|+.+|.++.++++|+++||..++..+... .+.. ..+..+ +..+.|++++|.+|+++
T Consensus 17 ~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~g~~----d~i~le-IteIvL~I~LFa~Gl~L 90 (810)
T TIGR00844 17 CVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-WGNT----DSITLE-ISRILLCLQVFAVSVEL 90 (810)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-cccc----hHHHHH-HHHHHHHHHHHHHHHhC
Confidence 33445566677777777799999999999999999997554221000 0000 001112 66789999999999999
Q ss_pred ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHh---hcCCCchHHHHHH
Q 001423 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLK---ELGASKKLNTIIE 194 (1079)
Q Consensus 118 d~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILk---elgl~~rL~~LIe 194 (1079)
+++.+|+.|+.++.|+++++.+++++++++++++++ +++|..|+++|||++||||+++.++++ ..++|++++.+++
T Consensus 91 ~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~ 169 (810)
T TIGR00844 91 PRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLS 169 (810)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHh
Confidence 999999999999999999999999999999998876 899999999999999999999999998 4578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHH
Q 001423 195 GESLMNDGTAIVVYQLFFQMVLGK----SFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFND----TVIEIALTL 266 (1079)
Q Consensus 195 GESLlNDa~AIVLf~l~l~~~~~~----~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d----~~~ei~ltL 266 (1079)
+||++||++|++++.+++.++... ......++..+++.+++|+++|+++|++..+++++..+. ......+.+
T Consensus 170 ~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~L 249 (810)
T TIGR00844 170 CESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYL 249 (810)
T ss_pred hhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 999999999999988887766421 111112233444556777889999999988888765432 223456778
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 001423 267 AVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQ 346 (1079)
Q Consensus 267 al~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~ 346 (1079)
++++++|.++ +.+|.||+||||+||+++++..+. . .+.....||+.+..+++.++|+++|+.++...+....+
T Consensus 250 aLAli~~gla-~lLggSGfLAVFVAGl~~gn~~~~--~--~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l-- 322 (810)
T TIGR00844 250 ILALTCAGFG-SMLGVDDLLVSFFAGTAFAWDGWF--A--QKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDI-- 322 (810)
T ss_pred HHHHHHHHHH-HHhccccHHHHHHHHHHHhcccch--h--hhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchh--
Confidence 8888899888 799999999999999999875432 1 12234679999999999999999999998765532111
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccC--CCc------c
Q 001423 347 NHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG--GSS------L 418 (1079)
Q Consensus 347 ~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~--~~~------~ 418 (1079)
....|..+++.+++++++|+.+++.+++++ +...+|+|+++++|.|+||+.++.++........ ..+ .
T Consensus 323 -~~~~w~~ilLaL~LifVrRPpaVlll~~li---~~~~s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~~~~~~~~~~~ 398 (810)
T TIGR00844 323 -GLDVWRLIILSLVVIFLRRIPAVLILKPLI---PDIKSWREAMFIGHFGPIGVGAVFAAILSKSQLESHLTDEETPLNV 398 (810)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCCHHHHHHheeeccccHHHHHHHHHHHHhhhcccCcccccccc
Confidence 124566677778888999998886554443 3346899999999999999999987765433221 000 0
Q ss_pred ccc------ccccchHhhhhhhhhHHHhhhhhhHHHHH
Q 001423 419 ITS------ETGTLFVFFTGGIVFLTLIVNGSTTQYIL 450 (1079)
Q Consensus 419 ~~~------~~~~l~vf~t~gVVllTLlV~G~tl~~Ll 450 (1079)
.+. .....+..++..+|++|++|+|+++++++
T Consensus 399 ~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~ 436 (810)
T TIGR00844 399 TPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIM 436 (810)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 000 01235667777899999999999999985
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=369.01 Aligned_cols=383 Identities=23% Similarity=0.386 Sum_probs=320.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCC--HHHHHHHHHHHHHHH
Q 001423 36 AVIFVG-ISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID--PDLLLAVFLPALLFE 112 (1079)
Q Consensus 36 ~lL~l~-ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~--pel~l~lfLp~LLF~ 112 (1079)
.+++++ ++++++.+...++.|+++|..+.++.+|++.|.=. ++.+. ++.. ...+..+.|.+++|+
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dG------lg~I~------fdNy~~Ay~vg~lALaiILfd 74 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDG------LGGIE------FDNYPFAYMVGNLALAIILFD 74 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCc------ccccc------cCccHHHHHHHHHHHHHHhhc
Confidence 344444 77788889999999999999999999999999743 32211 1112 345777889999999
Q ss_pred HhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHH
Q 001423 113 SSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTI 192 (1079)
Q Consensus 113 aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~L 192 (1079)
+|+.++++.+|...++.+.+|..||++|+.++|.+++|++ +++|.+++++|||+.+||+++|.+++++.++++|++++
T Consensus 75 gG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll--~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~st 152 (574)
T COG3263 75 GGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL--NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVAST 152 (574)
T ss_pred CccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhh
Confidence 9999999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 001423 193 IEGESLMNDGTAIVVYQLFFQMVLGK-S-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSY 270 (1079)
Q Consensus 193 IeGESLlNDa~AIVLf~l~l~~~~~~-~-~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~y 270 (1079)
+|-||.-||++|+++...++.+..++ + .++..++.|+.++.+| +++|+..|++..+.++++.-|.-....+.++..+
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG-~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~L 231 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLG-LLLGLGGGKLLLQLINRINLDSGLYPILALAGGL 231 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 99999999999999999998887765 2 5777777777776665 5689999999988888886666788899999999
Q ss_pred HHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc
Q 001423 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGN 350 (1079)
Q Consensus 271 lay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~ 350 (1079)
++|.++ +.+|.||++|+++||++++|. +-..++.+.+|.+-+++++..++|+++|+.+++..+ + ..
T Consensus 232 l~fs~t-~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql-----~---~i 297 (574)
T COG3263 232 LIFSLT-GAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQL-----L---PI 297 (574)
T ss_pred HHHHHH-HHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhh-----h---Hh
Confidence 999998 899999999999999999862 224578899999999999999999999999977433 1 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccchHhh
Q 001423 351 SWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFF 430 (1079)
Q Consensus 351 ~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~ 430 (1079)
..+.+++.+..++++|+++| |++....+.+++|+.+++|.|+||+|++.+|...--.+ - +.+.++.-.
T Consensus 298 avPailL~l~mifvaRP~aV-----~l~l~Pfrf~~~Ek~fvSWvGLRGAv~IilAifpm~ag--l-----ena~l~FNv 365 (574)
T COG3263 298 AIPAILLSLWMIFVARPLAV-----FLGLIPFRFNRREKLFVSWVGLRGAVPIILAIFPMMAG--L-----ENARLFFNV 365 (574)
T ss_pred hHHHHHHHHHHHHHHhHHHH-----HHhhcccccCccchheeehhhcccchhhhHhhhHHhcC--C-----ccceEEeeh
Confidence 33445566778899999999 55555667899999999999999999999997532211 0 123444456
Q ss_pred hhhhhhHHHhhhhhhHHHHHHHccCCCcc
Q 001423 431 TGGIVFLTLIVNGSTTQYILHLLDMDKLS 459 (1079)
Q Consensus 431 t~gVVllTLlV~G~tl~~Llr~Lgl~~~s 459 (1079)
++-||++|+++||.|+||..|++++..++
T Consensus 366 AF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 366 AFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred hHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 67799999999999999999999997665
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.98 E-value=1.4e-34 Score=334.17 Aligned_cols=372 Identities=25% Similarity=0.399 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHH
Q 001423 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIK 123 (1079)
Q Consensus 44 Lllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lr 123 (1079)
++++.+++.+.||+++|.+++++++|+++||...+..+ +. ....+.+..+++++++|.+|+++|.+.+|
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~------~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE------PD-----NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc------ch-----hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 33444555578999999999999999999998544211 11 14456789999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH-HccCCCcHHHHHHHHhHhccccHHHHHHHHhhc-CCCchHHHHHHHHHHHHH
Q 001423 124 RCLVQMILLAGPGVMISTFFLGAALKL-TFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL-GASKKLNTIIEGESLMND 201 (1079)
Q Consensus 124 r~~~~illLAv~gvlit~~lvg~~l~~-l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkel-gl~~rL~~LIeGESLlND 201 (1079)
+++++.+.+++.+++++++++++.+++ ++..+++|..++++|+++++|||+.+.+++++. +.++++++++.+|+.+||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d 153 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIND 153 (380)
T ss_dssp ----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhc
Confidence 999999999999999998886777764 223489999999999999999999999999554 589999999999999999
Q ss_pred HHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Q 001423 202 GTAIVVYQLFFQMV-LGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGA 280 (1079)
Q Consensus 202 a~AIVLf~l~l~~~-~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~l 280 (1079)
..+++++.++.... .+...++......+...++.++++|++.+++..+..++..+++..+..+++++++++|+++ |.+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a-~~~ 232 (380)
T PF00999_consen 154 IIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLA-EIL 232 (380)
T ss_dssp TTTTTTT-------------------------------------------------------------------------
T ss_pred cchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccc-ccc
Confidence 99999999988887 2333444444444444445556667777766544444433566678899999999999999 888
Q ss_pred cccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHH
Q 001423 281 DVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360 (1079)
Q Consensus 281 g~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v 360 (1079)
|.||++|++++|+++++ ....++..+.++.+|+ .++++++|+++|+.++...+.. +...|...+++++
T Consensus 233 g~s~~l~af~~Gl~~~~---~~~~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~------~~~~~~~~~~~~~ 300 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSN---SPFAERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN------SPSVIILVLLLLI 300 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehcccc---ccccchhhhcccchhh---HHHhhHHhhhhccccccccccc------chhhhhhHHHHHH
Confidence 99999999999999983 2223334555666665 8999999999999998654421 1345566667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhh-HHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHH
Q 001423 361 FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTL 439 (1079)
Q Consensus 361 ~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGl-RGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTL 439 (1079)
..+++|+++++...++ .+.+||++..++|++. ||.++++++....+.+ .++. .+...+..++++|.
T Consensus 301 ~~~~~k~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~----~~~~----~~~~~~~~~vl~t~ 367 (380)
T PF00999_consen 301 AILLGKFIGVYLASRL-----FGIPWKEALFIGLGMLPRGEVSLALALIALNLG----IISE----QMFTIIIAAVLLTI 367 (380)
T ss_dssp ---------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred HHHHhhhceeehhhhh-----cccccchhHHHHHhhcCccHHHHHHHHHHHhcC----CCCH----HHHHHheeeeeeHH
Confidence 7889999999654433 3789999999999988 9999999998876652 1111 22445566899999
Q ss_pred hhhhhhHHHHHHH
Q 001423 440 IVNGSTTQYILHL 452 (1079)
Q Consensus 440 lV~G~tl~~Llr~ 452 (1079)
+++|++++++++|
T Consensus 368 ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 368 IIAGIILSPLLRK 380 (380)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 10
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.97 E-value=2.3e-28 Score=298.75 Aligned_cols=339 Identities=16% Similarity=0.122 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHH
Q 001423 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1079)
Q Consensus 34 ~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~a 113 (1079)
.++++.+++++..+.++..++||+|+|.+++++++|+++||..+|... + ....+.+.++++.+++|..
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~------~------~~~i~~laelGvv~LlF~i 71 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT------D------VESILHFAEFGVVLMLFVI 71 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC------C------HHHHHHHHHHHHHHHHHHH
Confidence 347788889999999999999999999999999999999997544321 1 1124568889999999999
Q ss_pred hhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC-CCchHHHH
Q 001423 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1079)
Q Consensus 114 Gl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg-l~~rL~~L 192 (1079)
|+++|++++|+.++.++.++..++++++++++.+.+++ |++|..++++|++++.|+++.++.+++|.+ .+++.++.
T Consensus 72 GLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~---g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~ 148 (621)
T PRK03562 72 GLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLL---GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRS 148 (621)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 99999999999999999999999999887766555443 789999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc--chhHHHHHHHHH
Q 001423 193 IEGESLMNDGTAIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGI-ASVLWLGFIFN--DTVIEIALTLAV 268 (1079)
Q Consensus 193 IeGESLlNDa~AIVLf~l~l~~~~~-~~~s~~~i~~fl~~v~lGgiliGlv~G~-l~~~~l~~~~~--d~~~ei~ltLal 268 (1079)
+.|-.++||..+++++.+...+... ...+.......+.. .++.+++.+++|+ +..+++++..+ .+...+..++++
T Consensus 149 ~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~l 227 (621)
T PRK03562 149 AFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALK-VAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFL 227 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999888876554432 12122221111111 1122222233333 33344444332 233456666777
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccc
Q 001423 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNH 348 (1079)
Q Consensus 269 ~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~ 348 (1079)
++++.+++ +.+|+|.++|+|++|+++++ ..+ ++.+.+-.+.+..++.++||+.+|+.++...+
T Consensus 228 v~~~a~la-~~~Gls~~lGAFlAGl~l~~---~~~----~~~le~~i~pf~~lll~lFFi~vG~~id~~~l--------- 290 (621)
T PRK03562 228 VFGFGLLM-EEVGLSMALGAFLAGVLLAS---SEY----RHALESDIEPFKGLLLGLFFIAVGMSIDFGTL--------- 290 (621)
T ss_pred HHHHHHHH-HHhCccHHHHHHHHHHHhcC---Ccc----HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHH---------
Confidence 78888888 89999999999999999985 223 23333333334567889999999999987543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHHHhhh
Q 001423 349 GNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVK 410 (1079)
Q Consensus 349 ~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLAl~v~ 410 (1079)
...|+.++.+.++.+++|+++++....+ .+++++++..++++ ..+|..++.++....
T Consensus 291 ~~~~~~il~~~~~~~~~K~~~~~~~~~~-----~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~ 348 (621)
T PRK03562 291 LENPLRILILLLGFLAIKIAMLWLLARP-----LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQ 348 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHhccccHHHHHHHHHH
Confidence 1234444555566789999998755544 37899999999995 559999988875533
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.97 E-value=3.8e-28 Score=296.23 Aligned_cols=338 Identities=18% Similarity=0.188 Sum_probs=250.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHH
Q 001423 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (1079)
Q Consensus 32 ~~~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF 111 (1079)
+.++.+..+.+++..+.++..+++|+|+|.+++++++|+++||..+|..+ + ......+.++++.+++|
T Consensus 2 ~~~~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~------~------~~~i~~laelGvv~LLF 69 (601)
T PRK03659 2 EGSDLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS------D------VDEILHFSELGVVFLMF 69 (601)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC------c------HHHHHHHHHHHHHHHHH
Confidence 34566777888888999999999999999999999999999997544321 1 11234678899999999
Q ss_pred HHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC-CCchHH
Q 001423 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLN 190 (1079)
Q Consensus 112 ~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg-l~~rL~ 190 (1079)
..|+++|++.+|+..+.++.++..++++++++++.+.+++ |++|..++++|.+++.|+++.+..+++|.+ .+++.+
T Consensus 70 ~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~---g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G 146 (601)
T PRK03659 70 IIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT---DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESG 146 (601)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchH
Confidence 9999999999999999999999999999988777665543 889999999999999999999999999999 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc--hhHHHHHH
Q 001423 191 TIIEGESLMNDGTAIVVYQLFFQMVLGKSF--GWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIFND--TVIEIALT 265 (1079)
Q Consensus 191 ~LIeGESLlNDa~AIVLf~l~l~~~~~~~~--s~~~i~~fl~~v~lGgiliGlv~G-~l~~~~l~~~~~d--~~~ei~lt 265 (1079)
++..+-.++||..+++++.++..+...+.. .+..+... +..++..+++| ++..+++++..+. ....+..+
T Consensus 147 ~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 221 (601)
T PRK03659 147 QLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMK-----VLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAA 221 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 999999999999888888776554432221 12111111 11111112223 2333444444322 23455666
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccc
Q 001423 266 LAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF 345 (1079)
Q Consensus 266 Lal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~ 345 (1079)
+++++++.+++ +.+|+|+++|+|++|+++++ ..++++....++.| ..++.++||+.+|+.++...+
T Consensus 222 l~~vl~~a~l~-~~~Gls~~LGAFlaGl~l~~---s~~~~~l~~~i~pf----~~lll~lFFi~vGm~id~~~l------ 287 (601)
T PRK03659 222 LLLVLGSALFM-DALGLSMALGTFIAGVLLAE---SEYRHELEIAIEPF----KGLLLGLFFISVGMALNLGVL------ 287 (601)
T ss_pred HHHHHHHHHHH-HHhCccHHHHHHHHHHHhcC---CchHHHHHHHHHHH----HHHHHHHHHHHHhhhccHHHH------
Confidence 66677777777 89999999999999999985 22333333444444 457889999999999987544
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHh-hhhHHHHHHHHHHhhhc
Q 001423 346 QNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVW-SGLRGAVALSLSLSVKR 411 (1079)
Q Consensus 346 ~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~w-gGlRGaVsLaLAl~v~~ 411 (1079)
...|..++.+.++.+++|+++++....+ .+++|++++.++. .+.||.+++.++.....
T Consensus 288 ---~~~~~~il~~~~~~l~~K~~~~~~~~~~-----~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~ 346 (601)
T PRK03659 288 ---YTHLLWVLISVVVLVAVKGLVLYLLARL-----YGLRSSERMQFAGVLSQGGEFAFVLFSAASS 346 (601)
T ss_pred ---HHhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 2345555666677889999998654433 4789999998886 48899999988765443
No 12
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.97 E-value=1.7e-27 Score=298.50 Aligned_cols=353 Identities=17% Similarity=0.158 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccC----CHHHHHHHHHHH
Q 001423 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASI----DPDLLLAVFLPA 108 (1079)
Q Consensus 33 ~~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i----~pel~l~lfLp~ 108 (1079)
...+++.++++++++.++..+++|+|+|.+++++++|+++||..+|... ......++. .-+.+..+++.+
T Consensus 41 l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~------~~~~~~fp~~~~~~l~~la~lGlil 114 (832)
T PLN03159 41 LPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSE------VFANTIFPLRSVMVLETMANLGLLY 114 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcCh------hhhhhcCCcchHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999999999999999998655321 111111121 245688899999
Q ss_pred HHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCC----CcHHHHHHHHhHhccccHHHHHHHHhhcC
Q 001423 109 LLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD----WSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1079)
Q Consensus 109 LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~----ls~~~ALLLGAIlSaTDPvaVvaILkelg 184 (1079)
++|..|+++|++.+|++++.++..|+.+++++++++..+.+++ ... .....++++|.++|.|+..+++.+++|+|
T Consensus 115 lmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elk 193 (832)
T PLN03159 115 FLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIK 193 (832)
T ss_pred HHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 9999999999999999999999999999999876544433333 211 12345788999999999999999999999
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ch--hH
Q 001423 185 -ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN-DT--VI 260 (1079)
Q Consensus 185 -l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~-d~--~~ 260 (1079)
+++++++++.+.+++||.++++++.++.++...+......+ ..++..++..+++.+++.++..|+.++..+ ++ ..
T Consensus 194 ll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l-~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~ 272 (832)
T PLN03159 194 LINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASL-WVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEF 272 (832)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccc
Confidence 79999999999999999999999998877655433222221 111111111122223333333344444322 12 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 001423 261 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILG 340 (1079)
Q Consensus 261 ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~ 340 (1079)
.+.+++++++++.+++ +.+|+|.++|+|++|++++. .+......+++-.+...++.|+||+.+|+.++...+.
T Consensus 273 ~v~~il~~vl~~a~la-e~~Gl~~ilGAFlaGl~lp~------~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~ 345 (832)
T PLN03159 273 YICLILTGVMISGFIT-DAIGTHSVFGAFVFGLVIPN------GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ 345 (832)
T ss_pred hhHHHHHHHHHHHHHH-HHhCccHHHHHHHHhhccCC------cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc
Confidence 4566666777777788 89999999999999999964 1223445667777777899999999999999875542
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHHHhhhcc
Q 001423 341 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRS 412 (1079)
Q Consensus 341 ~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLAl~v~~~ 412 (1079)
....|..+++++++.+++|++++++...+ .+++|++++.++++ ..||.+++.++......
T Consensus 346 -------~~~~~~~~~~liv~a~~gK~~g~~l~a~~-----~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~ 406 (832)
T PLN03159 346 -------GPATWGLLVLVIIMASAGKIMGTIIIAFF-----YTMPFREGITLGFLMNTKGLVEMIVLNVGRDQ 406 (832)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 23345556666677789999988544433 48899999999995 77999999988765443
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.96 E-value=1.8e-26 Score=280.20 Aligned_cols=342 Identities=18% Similarity=0.129 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHh
Q 001423 35 DAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1079)
Q Consensus 35 ~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aG 114 (1079)
.++..++++++++.+++.+++|+++|.+++++++|+++||..+|..+ + ....+.+.++++.+++|..|
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~------~------~~~~~~la~lGli~llF~~G 73 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA------D------TKLAPELAELGVILLMFGVG 73 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc------c------hHHHHHHHHHHHHHHHHHhH
Confidence 45556688889999999999999999999999999999998544321 1 11246788999999999999
Q ss_pred hcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC-CCchHHHHH
Q 001423 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTII 193 (1079)
Q Consensus 115 l~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg-l~~rL~~LI 193 (1079)
+++|++.+|+.++..+..+..+++++++ +++++.+.+ +|+|..++++|+++|.|+++++..+++|.| ++++.++++
T Consensus 74 le~d~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 74 LHFSLKDLMAVKSIAIPGAIAQIAVATL-LGMALSAVL--GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred hcCCHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 9999999999877776666666666554 444444444 799999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc---cCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHH
Q 001423 194 EGESLMNDGTAIVVYQLFFQMVL---GKSFGWGAII----KFLAQVSLGAVGMGLAFGIASVLWLGFIFND--TVIEIAL 264 (1079)
Q Consensus 194 eGESLlNDa~AIVLf~l~l~~~~---~~~~s~~~i~----~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d--~~~ei~l 264 (1079)
.|.++++|..+++++.++..+.. ++..+..... ..+...++..++++++..++..+++++..+. .......
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~ 230 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLS 230 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999999888877655432 1222222111 1111111111112233333333344443322 2233444
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 001423 265 TLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKI 344 (1079)
Q Consensus 265 tLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~ 344 (1079)
+++++++..+.+.+.+|.|+++|+|++|++++. ... .+.+.+-...+..++.++||+.+|+.++...+
T Consensus 231 ~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~---~~~----~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l----- 298 (558)
T PRK10669 231 VLALALGIAFGAVELFDVSFALGAFFAGMVLNE---SEL----SHRAAHDTLPLRDAFAVLFFVSVGMLFDPMIL----- 298 (558)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC---Chh----HHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHH-----
Confidence 455555444333489999999999999999974 111 11121111223467899999999999986543
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHHHhhhcc
Q 001423 345 FQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRS 412 (1079)
Q Consensus 345 ~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLAl~v~~~ 412 (1079)
...+..++.+.++.+++|+++++....+ .+.+||+++.++.+ ..||..++.++....+.
T Consensus 299 ----~~~~~~~~~~~~~~~v~K~~~~~~~~~~-----~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~ 358 (558)
T PRK10669 299 ----IQQPLAVLATLAIIVFGKSLAAFFLVRL-----FGHSRRTALTIAASLAQIGEFAFILAGLGMAL 358 (558)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHhcccchHHHHHHHHHhC
Confidence 1233344455566788999998654443 36799999999995 66999999988664443
No 14
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.96 E-value=1.5e-26 Score=256.42 Aligned_cols=269 Identities=17% Similarity=0.177 Sum_probs=211.9
Q ss_pred HHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 001423 45 VLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKR 124 (1079)
Q Consensus 45 llg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr 124 (1079)
+++.+.+.++||+++|.+++++++|+++||...|..+ + ...-+.+..+++.+++|.+|+++|++.+|+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~------~------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~ 69 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS------N------VEGVNHLAEFGVILLMFLIGLELDLERLWK 69 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC------C------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566678889999999999999999999997443211 1 011356778999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHH
Q 001423 125 CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTIIEGESLMNDGT 203 (1079)
Q Consensus 125 ~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg-l~~rL~~LIeGESLlNDa~ 203 (1079)
+++.++.++..+++++++++|+.+.+.+ +++|..|+++|+++++||++++.++++|++ .+++.++++.+++++||..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 70 LRKAAFGVGVLQVLVPGVLLGLLLGHLL--GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999777777666555 789999999999999999999999999999 5889999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHhhc
Q 001423 204 AIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGAD 281 (1079)
Q Consensus 204 AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~--d~~~ei~ltLal~ylay~iAeE~lg 281 (1079)
+++++.++.....+++.+...+...+...+++.++++++.+++..+..++..+ +....+.+++.++++.++++ |.+|
T Consensus 148 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la-~~~g 226 (273)
T TIGR00932 148 VVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFA-DLLG 226 (273)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHhC
Confidence 99999998877654433433443434444455555667777766666665543 33466778888888888888 8999
Q ss_pred ccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001423 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIA 335 (1079)
Q Consensus 282 ~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~ 335 (1079)
.|+++|++++|+++++.. ..+. +.+..+.+..++.|+||+.+|+.++
T Consensus 227 ~s~~lgaf~aGl~~~~~~------~~~~-l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 227 LSMALGAFLAGVVLSESE------YRHK-LESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred CcHHHHHHHHHHHHcCCc------hHHH-HHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999999999999998621 1122 3333444558999999999999763
No 15
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.7e-25 Score=254.81 Aligned_cols=340 Identities=20% Similarity=0.218 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHH
Q 001423 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1079)
Q Consensus 34 ~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~a 113 (1079)
...+..+.++++++.+...+++|+|+|.+++++++|+++||..++... + ..-.-+.+.++++.+|+|.+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~------~-----~~~~i~~laelGvi~LlF~~ 73 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII------E-----SSEIIELLAELGVVFLLFLI 73 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC------C-----chHHHHHHHHHhHHHHHHHH
Confidence 345677888888888899999999999999999999999993221110 0 11123558889999999999
Q ss_pred hhcCChHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC-CCchHHH
Q 001423 114 SFAMEVHQIKRCLVQ-MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNT 191 (1079)
Q Consensus 114 Gl~ld~~~lrr~~~~-illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg-l~~rL~~ 191 (1079)
|+|+|++++|++.++ .+..+..++.++..+ +....+. .++++|..++++|++++.|+...+..+++|+| .+++.++
T Consensus 74 GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~-~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~ 151 (397)
T COG0475 74 GLEFDLERLKKVGRSVGLGVAQVGLTAPFLL-GLLLLLG-ILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQ 151 (397)
T ss_pred HHCcCHHHHHHhchhhhhhHHHHHHHHHHHH-HHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999 666655555554433 3222222 23889999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--cchhHHHHHHHHH
Q 001423 192 IIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFG-IASVLWLGFIF--NDTVIEIALTLAV 268 (1079)
Q Consensus 192 LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G-~l~~~~l~~~~--~d~~~ei~ltLal 268 (1079)
++.+..+++|..+++++.++..+..++..+...+...+....+. .++-+..| ++..++.++.. +++...+..++++
T Consensus 152 ~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f-~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i 230 (397)
T COG0475 152 LILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAF-LALLLLLGRYLLPPLFRRVAKTESSELFILFVLLL 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999888766554433333322221111 11222224 44444555544 3445667888888
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHH-HHHHHHHHhhhhhhhcccccccccccc
Q 001423 269 SYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAY-IANTLIFILSGVVIAEGILGNDKIFQN 347 (1079)
Q Consensus 269 ~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~-l~~~l~FillGl~I~~~vl~~~~~~~~ 347 (1079)
++.+.+++ |.+|.|.++|+|.+|++++.... . ++.+.+-.+.+.+ ++.|+||+.+|+.++...+.
T Consensus 231 ~l~~a~l~-e~~gls~ilGAFlaGl~ls~~~~---~---~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~------- 296 (397)
T COG0475 231 VLGAAYLA-ELLGLSMILGAFLAGLLLSESEY---R---KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL------- 296 (397)
T ss_pred HHHHHHHH-HHhChhHHHHHHHHHHHhccccc---c---hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh-------
Confidence 88888899 99999999999999999975221 1 1334444455566 99999999999999987662
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHHHh
Q 001423 348 HGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLS 408 (1079)
Q Consensus 348 ~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLAl~ 408 (1079)
..+..++++.++.++.|+++++...+.+ +.+++.+...+++ ..+|..+++++-.
T Consensus 297 --~~~~~~l~~~~~~i~~K~~~~~~~~~~~-----g~~~~~~~~~g~~~~~~ge~~~v~~~~ 351 (397)
T COG0475 297 --ENLLLILLLVALAILGKILGAYLAARLL-----GFSKRLALGIGLLLRQGGEFAFVLAGI 351 (397)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 3344467777888899999886544443 4677888777775 3477777766654
No 16
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.4e-25 Score=238.24 Aligned_cols=392 Identities=18% Similarity=0.208 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCCh
Q 001423 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (1079)
Q Consensus 40 l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~ 119 (1079)
.++..+.+.++..+-+++-+...+.-.+.|+++||...+... ....++. +.-..-+.-+.|.+-.|..|.+++.
T Consensus 19 g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfd-p~~wgn~-----d~it~ei~RvvLcvqvfava~eLPr 92 (467)
T KOG4505|consen 19 GGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFD-PNSWGNK-----DYITYEISRVVLCVQVFAVAMELPR 92 (467)
T ss_pred hhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcC-CccccCc-----chhhhhhhhhhHhHHHHHHHHhccH
Confidence 455667777777787888898889999999999997654332 1111111 1112346668899999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhc----CCCchHHHHHHH
Q 001423 120 HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL----GASKKLNTIIEG 195 (1079)
Q Consensus 120 ~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkel----gl~~rL~~LIeG 195 (1079)
..+.++|+.++++-.+-+.+..++.+.++|.++| ++++..++++++++++|||+...+|..+- ++|.|++.++.+
T Consensus 93 ~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~A 171 (467)
T KOG4505|consen 93 AYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAA 171 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHH
Confidence 9999999999999999999999999999999998 89999999999999999999999998642 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHH
Q 001423 196 ESLMNDGTAIVVYQLFFQMVLGKS-----FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN----DTVIEIALTL 266 (1079)
Q Consensus 196 ESLlNDa~AIVLf~l~l~~~~~~~-----~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~----d~~~ei~ltL 266 (1079)
||..||++|+.++-+.+.+...+. -+|. ....+.. ...|.++|+++|++.+..+++..+ |......+-+
T Consensus 172 ESGcNDGMaipflflai~Ll~h~~~r~~~rdwv-~~~iLye-c~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~v 249 (467)
T KOG4505|consen 172 ESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV-CDNILYE-CFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYV 249 (467)
T ss_pred hcCCCCCcchhHHHHHHHHHhcCchhccCCcee-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999988887765332 1222 1222333 344567899999998888877544 3344566777
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc
Q 001423 267 AVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQ 346 (1079)
Q Consensus 267 al~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~ 346 (1079)
++++++..++ +.+|++-.+..|.||++++..+.. +.++ .-.+.-+.+..+++..+|++.|..+|..-+....
T Consensus 250 vl~lfc~gig-tiiGvddLl~sFfAGi~Fswd~wF--sk~t--~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~--- 321 (467)
T KOG4505|consen 250 VLALFCMGIG-TIIGVDDLLVSFFAGIVFSWDEWF--SKKT--KESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSV--- 321 (467)
T ss_pred HHHHHHhhhh-heechhHHHHHHHhhhhcchhHHh--hhhh--hhccHHHHHHHHHHHHHHHHhccccchhhcCCcc---
Confidence 8888888888 899999999999999999874432 2222 2235556677789999999999999987664321
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccC----CCcccccc
Q 001423 347 NHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG----GSSLITSE 422 (1079)
Q Consensus 347 ~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~----~~~~~~~~ 422 (1079)
.....|..+++.+.++++-|..+++.+.|+..-+ .+|||+++++|.|+-|.-++-.|+....... .......+
T Consensus 322 ~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdi---kswkEALFvGhFGPIGVgAly~allar~~le~~ep~~~i~~~e 398 (467)
T KOG4505|consen 322 EGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDI---KSWKEALFVGHFGPIGVGALYYALLARKELETLEPEKSIYESE 398 (467)
T ss_pred cCchHHHHHHHHHHHHHhcccceEEEeccCCcch---hhHHHHHHhccCCCccHHHHHHHHHHHhhhccCCcccccCCcc
Confidence 1244666666667777777888888888877554 3899999999999999999888765432110 00000011
Q ss_pred -----cccchHhhhhhhhhHHHhhhhhhHHHHHH
Q 001423 423 -----TGTLFVFFTGGIVFLTLIVNGSTTQYILH 451 (1079)
Q Consensus 423 -----~~~l~vf~t~gVVllTLlV~G~tl~~Llr 451 (1079)
..+.+..++..+|+.|++++|.+.+.+.-
T Consensus 399 ~~~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl 432 (467)
T KOG4505|consen 399 TVFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTL 432 (467)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHhccchhhHHHH
Confidence 11234556667899999999999987653
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.7e-17 Score=178.67 Aligned_cols=372 Identities=18% Similarity=0.193 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHH
Q 001423 34 TDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFES 113 (1079)
Q Consensus 34 ~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~a 113 (1079)
+..+-.+...+.++.+.+.++.|+++|+.|+++++|+++||..+|+.. + .--...+.++++..++|..
T Consensus 5 tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva------d------~~La~~LAelGViLLmFgv 72 (408)
T COG4651 5 TPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA------D------QTLAPELAELGVILLMFGV 72 (408)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc------c------hhHHHHHHHhhHHHHHHhc
Confidence 344555677788889999999999999999999999999998776543 1 1113457889999999999
Q ss_pred hhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC-CCchHHHH
Q 001423 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG-ASKKLNTI 192 (1079)
Q Consensus 114 Gl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg-l~~rL~~L 192 (1079)
|++.+.+++.....-.+--|+....+.++ .|..+.++. ||++...+++|-.+|..++++.+.-++|.+ ++.+-+++
T Consensus 73 GLhfslkdLLavk~iAipgAl~qia~at~-lg~gL~~~l--gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~i 149 (408)
T COG4651 73 GLHFSLKDLLAVKAIAIPGALAQIALATL-LGMGLSSLL--GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRI 149 (408)
T ss_pred chheeHHHHhhHHHHhcchHHHHHHHHHH-HHhHHHHHc--CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceE
Confidence 99999998876544333233333333332 233333443 899999999999999999999999999988 78899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---ccCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHh--cchhHHHH
Q 001423 193 IEGESLMNDGTAIVVYQLFFQMV---LGKSFGWGAIIKFL---AQVSLGAVGMGLAFGIASVLWLG-FIF--NDTVIEIA 263 (1079)
Q Consensus 193 IeGESLlNDa~AIVLf~l~l~~~---~~~~~s~~~i~~fl---~~v~lGgiliGlv~G~l~~~~l~-~~~--~d~~~ei~ 263 (1079)
..|--++.|...++.....-+++ ..++..+......+ ..-....+.+++++|+-...|+- +.- ........
T Consensus 150 AiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L 229 (408)
T COG4651 150 AIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTL 229 (408)
T ss_pred EEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999976554444332222 22222222221111 11123345577888876666543 322 22334455
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 001423 264 LTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDK 343 (1079)
Q Consensus 264 ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~ 343 (1079)
..+++++...+.+.+.+|+|.-+|+|++|++++. .+.+.+..+..-.. -..+..+||+.+|+..++.++-
T Consensus 230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e---selshraa~~slpL----rdaFaVlFFvsVGmlf~P~~l~--- 299 (408)
T COG4651 230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE---SELSHRAAEDSLPL----RDAFAVLFFVSVGMLFDPMILI--- 299 (408)
T ss_pred HHHHHHHHHhhccceeeccchhHHHHHHHHHhcc---hhhhHHHHHhccCH----HHHHHHHHHHHhhhhcCcHHhh---
Confidence 6666777776677799999999999999999975 22333333333333 3367788999999999876542
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHHHhhhcccCCCcccccc
Q 001423 344 IFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRSSGGSSLITSE 422 (1079)
Q Consensus 344 ~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLAl~v~~~~~~~~~~~~~ 422 (1079)
.....++..+.+++.+|-+..|.. .+.+ +.+.+.++.++.+ ---|..++.++-.--..+ .+++.
T Consensus 300 ------~~pl~vlatllii~~gKs~aaf~i---vr~F--g~~~~TaLtis~SLaqigEFsfIlaGLgi~l~----llp~~ 364 (408)
T COG4651 300 ------QQPLAVLATLLIILFGKSVAAFFI---VRAF--GHPVRTALTISASLAQIGEFSFILAGLGIKLN----LLPEA 364 (408)
T ss_pred ------cchHHHHHHHHHHHhhhHHHHHHH---HHHh--CCcchHHHHHHHHHHhhhhHHHHHHHHhhhhc----cCcHH
Confidence 222345556666777887766432 3333 4577788887775 337777777763322111 22222
Q ss_pred cccchHhhhhhhhhHHHhhhhhhHHHH
Q 001423 423 TGTLFVFFTGGIVFLTLIVNGSTTQYI 449 (1079)
Q Consensus 423 ~~~l~vf~t~gVVllTLlV~G~tl~~L 449 (1079)
.+++++ ...++++++|......+
T Consensus 365 gr~Lvl----agailsIl~nPllf~~~ 387 (408)
T COG4651 365 GRDLVL----AGAILSILLNPLLFALL 387 (408)
T ss_pred HHHHHH----HHHHHHHHHhHHHHHHH
Confidence 234333 35677888876544433
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.2e-17 Score=207.64 Aligned_cols=383 Identities=16% Similarity=0.111 Sum_probs=266.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCC----HHHHHHHHHHH
Q 001423 33 PTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID----PDLLLAVFLPA 108 (1079)
Q Consensus 33 ~~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~----pel~l~lfLp~ 108 (1079)
...+++++.+++++..++..++|++|+|..+..+++||++||+.+|-.. ......++.+ -+.+..+++.+
T Consensus 21 lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~------~~~~~~f~~~s~~~l~~~~~lg~~~ 94 (769)
T KOG1650|consen 21 LPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIP------SYMNTIFPKSSMIVLELLANLGFLF 94 (769)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccCh------hhhhcccccchHHHHHHHHHHHHHH
Confidence 3556777888889999999999999999999999999999998665332 1111112222 35677777899
Q ss_pred HHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCc----HHHHHHHHhHhccccHHHHHHHH
Q 001423 109 LLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP----YDWS----WKTSLLLGGLLSATDPVAVVALL 180 (1079)
Q Consensus 109 LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p----~~ls----~~~ALLLGAIlSaTDPvaVvaIL 180 (1079)
++|..|+++|.+.+|+..+....+|+.++++++.....+...+.. ...+ ...-...+...|.|...++..++
T Consensus 95 f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL 174 (769)
T KOG1650|consen 95 FLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARIL 174 (769)
T ss_pred HHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHH
Confidence 999999999999999999999999999998876554333333210 0011 11446667888999999999999
Q ss_pred hhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-
Q 001423 181 KELG-ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMG-LAFGIASVLWLGFIFND- 257 (1079)
Q Consensus 181 kelg-l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliG-lv~G~l~~~~l~~~~~d- 257 (1079)
.|++ .+++++++....+++||..++.++.+..........+.......+... ++.+++. +++-.+..|+.++...+
T Consensus 175 ~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~v~~p~~~wi~kr~pe~~ 253 (769)
T KOG1650|consen 175 AELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLV-IGFVLFLFFVVRPLMKWIIKRTPEGK 253 (769)
T ss_pred HHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHH-HHHHHheeeehhhhHHHHhhcCCCCC
Confidence 9999 789999999999999999999999888887665443222111211111 1212121 22233333444443222
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001423 258 TV--IEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIA 335 (1079)
Q Consensus 258 ~~--~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~ 335 (1079)
+. ..+..+++..+.+.+..+..-+.++++|+++.|+++.+ -+|-.....+++-+....++.|++|+..|+..+
T Consensus 254 ~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~-----~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~d 328 (769)
T KOG1650|consen 254 PVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPH-----GPPLGSALIEKLEDLVSGLLLPLYFAISGLKTD 328 (769)
T ss_pred ccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 11 34556666666666666344448999999999999854 234446667788888888999999999999987
Q ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHHHhhhcccC
Q 001423 336 EGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLSLSVKRSSG 414 (1079)
Q Consensus 336 ~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLAl~v~~~~~ 414 (1079)
...+ ..|...........++|++++.+...+ +++++++++.++.. ..+|.+.+..-....+..
T Consensus 329 i~~i----------~~~~~~~~~i~~~~~~K~l~t~~~sl~-----~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~- 392 (769)
T KOG1650|consen 329 ISRI----------NKWGALIRTILIFGAVKLLSTLGTSLY-----CKLPLRDSLALGLLMSTKGLVELIVLNTGLDRK- 392 (769)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 5433 127777777788888999998655443 37999999999985 669999988776654432
Q ss_pred CCcccccccccchHhhhhhhhhHHHhhhhhhHHHHHHHcc
Q 001423 415 GSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLD 454 (1079)
Q Consensus 415 ~~~~~~~~~~~l~vf~t~gVVllTLlV~G~tl~~Llr~Lg 454 (1079)
... .-++++.++..+++...+|++++.+-
T Consensus 393 ---~~~--------~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 393 ---ILS--------DEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred ---Ccc--------cchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 111 12455666777777777778777543
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.09 E-value=5.7e-08 Score=113.12 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHhhcC-------ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccc
Q 001423 99 DLLLAVFLPALLFESSFAM-------EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSAT 171 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~l-------d~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaT 171 (1079)
+++-.....+..|..|+|+ +++..||...|+ +-|+.|+++++++ |+.+ +..-..+.-=-+|-++|
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~-~aAlGGm~vPali-----y~~~--n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPV-AAALGGMIVPALI-----YVAV--NLAGGGALRGWAIPTAT 135 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHH-HHHHHhHHHHHHH-----HHHH--hCCchhhhhhhhhhhhh
Confidence 4566667777889999999 667777777774 4577888887643 2222 12112222222677999
Q ss_pred cHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 172 DPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVL 249 (1079)
Q Consensus 172 DPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~ 249 (1079)
|.+.+++++..+| +|.+++..+.+-+.+||..|+++..++. +++.++..+.. .++ ++++- +
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~~-----a~~----~~~~l----~ 198 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALLL-----ALV----PLALF----W 198 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHHH-----HHH----HHHHH----H
Confidence 9999999999887 6999999999999999999999998877 44555443211 111 11111 1
Q ss_pred HHHHH-hcchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhccccc-cc-----chhhHHHHHHHHHHHHHH
Q 001423 250 WLGFI-FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA-FK-----GESQQSLHYFWEMVAYIA 322 (1079)
Q Consensus 250 ~l~~~-~~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~-~~-----~~~~~~l~~fwe~ls~l~ 322 (1079)
.+++. .++......+ ..+.++.. +..|.++.+|.|++|+++....+.. .. +..+...+.+...+.+++
T Consensus 199 ~l~~~~V~~~~~Y~il----g~~lW~~~-~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 199 LLVQKRVRKWWLLLPL----GVATWILV-HESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HHHHcCCchhhHHHHH----HHHHHHHH-HHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 12221 1222222222 33444444 7899999999999999996421111 00 112344456666667899
Q ss_pred HHHH-HHhhhhhhhc-cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCChHHHHHHHhh
Q 001423 323 NTLI-FILSGVVIAE-GILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVWS 395 (1079)
Q Consensus 323 ~~l~-FillGl~I~~-~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~-----g~~ls~re~~vl~wg 395 (1079)
.|+| |.-.|+.++. ..+. +...-...+.+.+..+++|+++++.+.+...+. ..+++|++.+-++.
T Consensus 274 LPLFAFANaGV~l~~~~~~~-------~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~- 345 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLG-------AALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL- 345 (423)
T ss_pred HHHHHHHHhhheecCchhHH-------HHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH-
Confidence 9999 9999999853 2110 000112455667788899999998877665443 35678887766554
Q ss_pred hhHHHHHHHHHHhh
Q 001423 396 GLRGAVALSLSLSV 409 (1079)
Q Consensus 396 GlRGaVsLaLAl~v 409 (1079)
-+.+.+.+++.+
T Consensus 346 --L~GIGFTmSlFI 357 (423)
T PRK14853 346 --LAGIGFTVSLLI 357 (423)
T ss_pred --HHHHHHHHHHHH
Confidence 334444444443
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.46 E-value=4.7e-05 Score=87.69 Aligned_cols=266 Identities=16% Similarity=0.219 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~l-------rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-.....+..|..|+|+..+.+ ||..-|+ +-|+.|+++++++ |..+..+-+ ...=| +|-.+
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~-~aA~GGm~vPa~i-----y~~~n~~~~---~~~~GW~IP~A 124 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPV-IAAIGGMIAPALI-----YLAFNANDP---ITREGWAIPAA 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 455566677778888998865443 3333333 3466777776543 333211100 00011 56678
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-..+++.=+| +|..++..+..=++++|..|+++..++.+ ++.++.... +... . ....
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L~-------~a~~---~---~~~l 187 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAALL-------VAAV---A---IAVL 187 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHHH-------HHHH---H---HHHH
Confidence 99998888887665 89999999999999999999998877653 344433221 1101 1 1111
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHH-HHHHHHHHH
Q 001423 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEM-VAYIANTLI 326 (1079)
Q Consensus 249 ~~l~~~~-~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~-ls~l~~~l~ 326 (1079)
+.+++.. ++...... ...+.++.. ...|++..+|.|++|+++....+.. .+-.+.+++..+. ..++..|+|
T Consensus 188 ~~~~~~~v~~~~~y~~----lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lilPlF 260 (373)
T TIGR00773 188 AVLNRCGVRRLGPYML----VGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLILPLF 260 (373)
T ss_pred HHHHHcCCchhhHHHH----HHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 2333332 12222222 222223233 5689999999999999997532221 1112344444444 457788999
Q ss_pred -HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHhhhhHHH
Q 001423 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGA 400 (1079)
Q Consensus 327 -FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g-----~~ls~re~~vl~wgGlRGa 400 (1079)
|+-.|+.++...+. ...++ ..+.+.+..+++|+++++...+...+.+ .+.+|++..-++. -+.
T Consensus 261 AFanAGv~l~~~~~~-------~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~---L~G 329 (373)
T TIGR00773 261 AFANAGVSLQGVSLN-------GLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV---LCG 329 (373)
T ss_pred HHHhcCeeeecCcch-------hhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHH
Confidence 99999999643221 11123 3567778889999999988877765543 4678888776654 333
Q ss_pred HHHHHHHh
Q 001423 401 VALSLSLS 408 (1079)
Q Consensus 401 VsLaLAl~ 408 (1079)
+.+.+++.
T Consensus 330 IGFTmSlf 337 (373)
T TIGR00773 330 IGFTMSIF 337 (373)
T ss_pred HHHHHHHH
Confidence 44444443
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.81 E-value=0.0089 Score=70.40 Aligned_cols=268 Identities=15% Similarity=0.224 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~l-------rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-..+..+..|..|+|+..+.+ ||..-|+ +-|+.|++++++ +|+.+..+-+ . .=| +|-.+
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi-~AAlGGmivPAl-----IY~~~n~~~~---~-~~GWgIPmA 139 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPV-IAALGGMIAPGL-----IYFFLNADTP---S-QHGFGIPMA 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH-HHHHhccHHHHH-----HHhheecCCC---c-cCccccccH
Confidence 456666777788889998864433 3333343 346667777653 3333311100 0 111 56688
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-+++++.=+| +|..++..+..=++++|..||++..+|.+ ++.++..+. +.. +.+ +..
T Consensus 140 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~-------~a~---~~~---~~l 202 (438)
T PRK14856 140 TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWLL-------GAL---GVV---LVL 202 (438)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHHH-------HHH---HHH---HHH
Confidence 99999888886665 89999999999999999999998877653 344433221 110 111 111
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhccccccc----------------------c
Q 001423 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK----------------------G 305 (1079)
Q Consensus 249 ~~l~~~~-~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~----------------------~ 305 (1079)
+.+++.. +....+..+ ..+.++.- ..-|++.-+|.++.|+++....+.+-. +
T Consensus 203 ~~ln~~~v~~~~~Y~~~----G~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK14856 203 AVLNRLNVRSLIPYLLL----GVLLWFCV-HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE 277 (438)
T ss_pred HHHHHcCCccccHHHHH----HHHHHHHH-HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence 2233321 222223222 22333322 446889999999999998753221000 0
Q ss_pred h---------------h-hHHHHHHHHH-HHHHHHHHH-HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Q 001423 306 E---------------S-QQSLHYFWEM-VAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRL 367 (1079)
Q Consensus 306 ~---------------~-~~~l~~fwe~-ls~l~~~l~-FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~ 367 (1079)
+ . -+.+++.+.. +.|+..|+| |.=.|+.++.... ...-...+.+.+..+++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~---------~~~~pv~lGI~~GLvvGK~ 348 (438)
T PRK14856 278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN---------LEVDKVLLGVILGLCLGKP 348 (438)
T ss_pred hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh---------hccCcHHHHHHHHHHhcch
Confidence 0 0 1223333333 344444443 3336776642211 0111234566677889999
Q ss_pred HHHHHHHHHHhhhc-----CCCChHHHHHHHhhhhHHHHHHHHHHhhh
Q 001423 368 FVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGAVALSLSLSVK 410 (1079)
Q Consensus 368 l~v~~l~p~L~~~g-----~~ls~re~~vl~wgGlRGaVsLaLAl~v~ 410 (1079)
+++++..++..+++ .+++|++.+-++. -+.+.+.+++.+.
T Consensus 349 lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~---LaGIGFTmSLFIa 393 (438)
T PRK14856 349 LGIFLITFISEKLKITARPKGISWWHILGAGL---LAGIGFTMSMFIS 393 (438)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 99988877765554 4678887766554 3445555555443
No 22
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.76 E-value=0.016 Score=66.93 Aligned_cols=142 Identities=17% Similarity=0.197 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHH---HHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHH
Q 001423 32 NPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPA 108 (1079)
Q Consensus 32 ~~~~~lL~l~ilLllg~~~~~---L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~ 108 (1079)
|....+...++++++|...++ +++|+.+|.+|.==+++.++++..++.. .....++. .-++.++.+
T Consensus 6 n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~----~~~~~fd~---~l~~~fmli---- 74 (404)
T COG0786 6 NALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFG----GVSLNFDT---SLQDVFMLI---- 74 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcc----eEEEeCCc---ccccHHHHH----
Confidence 445567777888888888764 6789999999765455555555533221 11111111 112233322
Q ss_pred HHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHccCCCcHHHHHHHHhHhcc--c-cHHHHHHHHhhc
Q 001423 109 LLFESSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLGGLLSA--T-DPVAVVALLKEL 183 (1079)
Q Consensus 109 LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~--lvg~~l~~l~p~~ls~~~ALLLGAIlSa--T-DPvaVvaILkel 183 (1079)
..-..|+..++..+||-+++..+....++.+... .+|..+..+. +.+...+++.|+|--. . ..+|....+++.
T Consensus 75 FFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~l--gidpl~gllagsIsl~GGHGtaAA~~~~f~~~ 152 (404)
T COG0786 75 FFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLL--GLDPLIGLLAGSISLVGGHGTAAAWGPTFEDL 152 (404)
T ss_pred HHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHc--CccHHHHHHhcceeecCCCchHHHHHHHHHhc
Confidence 2234589999999999998877665544443221 1222222232 5666666666654322 1 133344555555
Q ss_pred CCC
Q 001423 184 GAS 186 (1079)
Q Consensus 184 gl~ 186 (1079)
|.+
T Consensus 153 G~~ 155 (404)
T COG0786 153 GAE 155 (404)
T ss_pred CCc
Confidence 543
No 23
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.72 E-value=0.0073 Score=70.15 Aligned_cols=269 Identities=17% Similarity=0.215 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~l-------rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-.....+..|..|+|+..+.+ ||..-|+ +-|+.|+++++++ |+.+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi-~AAlGGmivPAlI-----y~~~n~g~~---~~~~GWgIPmA 131 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPA-IAAVGGMVVPALI-----YAAFNYNNP---ETLRGWAIPAA 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHHHH-----HheeecCCC---cccCccccccH
Confidence 456666677788889998864433 3333343 3466777776543 322211100 00011 46678
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-.++++.=+| +|..++..+..=+.++|..|+++..++.+ ++.++..+. ++. +.+ +..
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~~~~L~-------~a~---~~~---~~l 194 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLSLPALA-------LAA---IAI---AVL 194 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCCHHHHH-------HHH---HHH---HHH
Confidence 99999888887665 89999999999999999999988877653 344433221 111 111 111
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccc-hhhHHHHHHHHHHHHHHHHHH
Q 001423 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYFWEMVAYIANTLI 326 (1079)
Q Consensus 249 ~~l~~~~-~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~-~~~~~l~~fwe~ls~l~~~l~ 326 (1079)
+++++.. ++...+..+ ....++.- ..-|++.-+|-++.|+++....+..... ..++..|.+...++++..|+|
T Consensus 195 ~~ln~~~v~~~~~Y~~~----G~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF 269 (389)
T PRK09560 195 FLLNRLGVTKLTPYLIV----GAILWFAV-LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF 269 (389)
T ss_pred HHHHHcCCccchHHHHH----HHHHHHHH-HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence 2233321 222223222 22333222 4468999999999999997633222111 112223334344455545554
Q ss_pred -HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHhhhhHHH
Q 001423 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGA 400 (1079)
Q Consensus 327 -FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g-----~~ls~re~~vl~wgGlRGa 400 (1079)
|.=.|+.++...+. . ..-...+.+.+..+++|++++++..++..+++ .+.+|++..-++. -|.
T Consensus 270 AlaNAGV~l~~~~~~-------~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~---L~G 338 (389)
T PRK09560 270 AFANAGVSLAGISLS-------S-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV---LCG 338 (389)
T ss_pred HhhcCCeeecCCcHH-------h-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHH
Confidence 33367666321111 0 11123456677788999999988887765543 4678887766554 344
Q ss_pred HHHHHHHhh
Q 001423 401 VALSLSLSV 409 (1079)
Q Consensus 401 VsLaLAl~v 409 (1079)
+.+.+++.+
T Consensus 339 IGFTmSLFI 347 (389)
T PRK09560 339 IGFTMSLFI 347 (389)
T ss_pred HHHHHHHHH
Confidence 455555444
No 24
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.64 E-value=0.016 Score=68.02 Aligned_cols=264 Identities=14% Similarity=0.196 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~l-------rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-.....+..|..|+|+..+.+ ||..-|+ +-|+.|++++++ +|+.+..+-+ . .=| +|-.+
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPi-iAAlGGmivPAl-----Iy~~~n~~~~--~--~~GWgIPmA 134 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAV-VAALGGMLVPAA-----LYTALNAGGP--G--ASGWGVPMA 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-HHHHhchHHHHH-----HHheeecCCC--c--cCccccccH
Confidence 455566677778888998865443 3333333 346667777653 3333321111 0 112 56788
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-+.+++.=+| +|..++..+..=++++|..||++..+|.+ ++.++..+ .+..++++ ..
T Consensus 135 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~a~~~~~------~l 197 (423)
T PRK14855 135 TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SGLNLLAL-------LLAALTWA------LA 197 (423)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CCCCHHHH-------HHHHHHHH------HH
Confidence 99999988887666 89999999999999999999988877653 34444322 11111111 11
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhccccc--c----------------------
Q 001423 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA--F---------------------- 303 (1079)
Q Consensus 249 ~~l~~~~-~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~--~---------------------- 303 (1079)
+++++.. +....+.. ...+.++.- ..-|++.-+|-++.|+++....+.. +
T Consensus 198 ~~ln~~~v~~~~~Y~~----~G~~lW~~~-l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 198 LLAGRLGVTSLKIYAV----LGALLWFFV-LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred HHHHHcCCccccHHHH----HHHHHHHHH-HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 2233321 22222222 222333322 4468999999999999997531111 0
Q ss_pred -c---c--hh-hHHHHHHH-HHHHHHHHHHH-HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 304 -K---G--ES-QQSLHYFW-EMVAYIANTLI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLY 374 (1079)
Q Consensus 304 -~---~--~~-~~~l~~fw-e~ls~l~~~l~-FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~ 374 (1079)
. + +. -+.+++.. ..+.++..|+| |.=.|+.+... . .....+.+.+..+++|++++++..
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~-----------~-~~pv~lGI~~GLvvGK~lGI~~~s 340 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGG-----------G-LGTVSLGVFLGLLLGKPLGVVGGA 340 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCC-----------C-CCcHHHHHHHHHHhcchHHHHHHH
Confidence 0 0 00 12222322 23344444443 33356665321 0 112445667778899999998887
Q ss_pred HHHhhhc-----CCCChHHHHHHHhhhhHHHHHHHHHHhh
Q 001423 375 PVLRNFG-----YGLEWKEAIILVWSGLRGAVALSLSLSV 409 (1079)
Q Consensus 375 p~L~~~g-----~~ls~re~~vl~wgGlRGaVsLaLAl~v 409 (1079)
++..+++ .+++|++..-+++ -+.+.+.+++.+
T Consensus 341 ~lavkl~~a~lP~g~~w~~l~gv~~---LaGIGFTmSLFI 377 (423)
T PRK14855 341 WLAVRLGLASLPRRVNWLHMLGAGL---LAGIGFTMSLFI 377 (423)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 7765543 4678887766554 334444455443
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.62 E-value=0.0071 Score=69.94 Aligned_cols=267 Identities=14% Similarity=0.200 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~l-------rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-.....+..|..|+|+..+.. ||..-|+ +-|+.|+++++++ |..+ +.+ ....=| +|-.+
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~-~AAlGGmivPAlI-----y~~~--n~~--~~~~~GW~IP~A 127 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPA-IAAFAGLAMPSLI-----YLSI--NHD--IKVINGWAIPSA 127 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHHHH-----HHhh--ccC--CcccCccccccH
Confidence 455566677778888998864433 3333333 3466777776543 3322 111 111111 56688
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-.++++.=+| +|..++..+..=++++|..|+++..+|.+ ++.++..+ .++.++++++
T Consensus 128 TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~A~~~~~~l------ 190 (383)
T PRK14854 128 TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSLSLLSL-------SLGTLFILAM------ 190 (383)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCccHHHH-------HHHHHHHHHH------
Confidence 99998888887665 89999999999999999999988877653 34444322 1111111111
Q ss_pred HHHHHH--hcchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 001423 249 LWLGFI--FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI 326 (1079)
Q Consensus 249 ~~l~~~--~~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~ 326 (1079)
..++|. .+....+.. ...+.++.- ..-|.+.-+|-++.|+++....+...+| .++..|.+...+.++..|+|
T Consensus 191 ~~~nr~~~v~~~~~Y~~----~G~~lW~~~-l~SGvHaTiAGV~~a~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 191 IICNRIFKINRSSVYVV----LGFFAWFCT-IKSGVHATLAGFTTALCIPFRENDKDSP-ANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred HHHHHhcCCceehHHHH----HHHHHHHHH-HHhcccHHHHHHHHHHhcccCCCCCCCH-HHHHHHHhhchHHHhhHHHH
Confidence 122222 122222222 223333322 4468999999999999987532211111 12223334444555555554
Q ss_pred -HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCChHHHHHHHhhhhHHH
Q 001423 327 -FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVWSGLRGA 400 (1079)
Q Consensus 327 -FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~-----g~~ls~re~~vl~wgGlRGa 400 (1079)
|.=.|+.+....++ ...-...+.+.+..+++|+++++...++..++ ..+.+|++.+-++. -+.
T Consensus 265 A~aNAGV~l~~~~~~--------~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~---L~G 333 (383)
T PRK14854 265 AFANAGISFSGISFS--------ILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL---LCG 333 (383)
T ss_pred HhhcCCeeeccCcHH--------hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHH
Confidence 33366666321110 01112345666778899999998877765543 35678888766554 334
Q ss_pred HHHHHHHhh
Q 001423 401 VALSLSLSV 409 (1079)
Q Consensus 401 VsLaLAl~v 409 (1079)
+.+.+++.+
T Consensus 334 IGFTmSLFI 342 (383)
T PRK14854 334 IGFTMSLFI 342 (383)
T ss_pred HHHHHHHHH
Confidence 444455443
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.49 E-value=0.008 Score=69.70 Aligned_cols=268 Identities=15% Similarity=0.206 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQI-------KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~l-------rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-.....+..|..|+|+..+.+ ||..-|+ .-|+.|+++++++ |+.+..+-+ ...=| +|-.+
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi-~AAlGGmivPAli-----y~~~n~~~~---~~~~GWaIP~A 131 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPV-IAAIGGMLVPALI-----YLLFNYADP---VTREGWAIPAA 131 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH-HHHHhchHHHHHH-----HhheecCCC---cccCccccccH
Confidence 455566677778889998865443 3333333 3466777776543 333211100 00011 56678
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-.++++.=+| +|..++..+..=+.++|..|+++..++.+ ++.++.... +... +++ ..
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~-------~a~~----~~~--~l 194 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDLSMVSLG-------VAAV----AIA--VL 194 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCccHHHHH-------HHHH----HHH--HH
Confidence 99998888886655 89999999999999999999998877653 344443221 1111 111 11
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHH-
Q 001423 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI- 326 (1079)
Q Consensus 249 ~~l~~~~-~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~- 326 (1079)
..+++.. ++...+..+ ..+.++.- ..-|.+.-+|-++.|+++....+...+| .++..|.+...+.++..|+|
T Consensus 195 ~~ln~~~v~~~~~Y~~~----G~~lW~~~-l~SGvHaTiAGV~la~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlFA 268 (388)
T PRK09561 195 AVLNLCGVRRTSVYILV----GVVLWVAV-LKSGVHATLAGVIVGFFIPLKEKHGRSP-AERLEHGLHPWVAFLILPLFA 268 (388)
T ss_pred HHHHHcCCccchHHHHH----HHHHHHHH-HHccccHHHHHHHHHhhccccCCCCCCH-HHHHHHHhhhhhhheeHHHHH
Confidence 2233322 222222222 22333222 4468999999999999997632222111 12233344444555455543
Q ss_pred HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHhhhhHHHH
Q 001423 327 FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGAV 401 (1079)
Q Consensus 327 FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g-----~~ls~re~~vl~wgGlRGaV 401 (1079)
|.=.|+.+....++ ...-...+.+.+..+++|.+++++..++..+++ .+.+|++..-++. -+.+
T Consensus 269 faNAGV~l~~~~~~--------~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~---L~GI 337 (388)
T PRK09561 269 FANAGVSLQGVTLD--------GLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV---LCGI 337 (388)
T ss_pred hhcCCeeeccCcHH--------hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---HHHH
Confidence 33366666321110 001123456667788999999988877765543 4678887766554 3444
Q ss_pred HHHHHHhh
Q 001423 402 ALSLSLSV 409 (1079)
Q Consensus 402 sLaLAl~v 409 (1079)
.+.+++.+
T Consensus 338 GFTmSLFI 345 (388)
T PRK09561 338 GFTMSIFI 345 (388)
T ss_pred HHHHHHHH
Confidence 45555443
No 27
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.40 E-value=0.17 Score=59.47 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHH---HHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHH
Q 001423 31 GNPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP 107 (1079)
Q Consensus 31 ~~~~~~lL~l~ilLllg~~~~~---L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp 107 (1079)
.+....+...++++++|.+++. +++|+-+|.++.==++|.++.+... ..+.+. .+.|.. +...++.
T Consensus 3 l~~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~----~~~~~~------~~f~~~-l~~~lm~ 71 (368)
T PF03616_consen 3 LDALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILG----GFGGIS------ISFDTS-LQDFLMI 71 (368)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHH----hcCceE------EEechh-HHHHHHH
Confidence 3556667788899999999875 6789999988652222333332211 111111 123322 2222222
Q ss_pred HHHHHHhhcCChHHHHHhhhHHHHHHHHH
Q 001423 108 ALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1079)
Q Consensus 108 ~LLF~aGl~ld~~~lrr~~~~illLAv~g 136 (1079)
+..=..|+..+++.+|+-++.+.......
T Consensus 72 ~fF~~igL~~~~~~lkkgg~~~~~~~~~~ 100 (368)
T PF03616_consen 72 IFFTTIGLGASLKLLKKGGKAVLIFLLIA 100 (368)
T ss_pred HHHHHHhhccchhhHHhhHHHHHHHHHHH
Confidence 22223488889999998887776654443
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.37 E-value=0.0011 Score=76.47 Aligned_cols=269 Identities=15% Similarity=0.217 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH-hHhcc
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQIK-------RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG-GLLSA 170 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~lr-------r~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG-AIlSa 170 (1079)
+++-.....+..|..|+|+..+... |..-|+ .-|+.|++++++ +|..+..+-+ . ..=| +|-.+
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~-~AAlGGm~vPal-----Iyl~~n~~~~--~-~~~GW~IP~A 127 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPI-IAALGGMLVPAL-----IYLAFNAGGP--E-AAHGWAIPMA 127 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHH-HHHHHHTTTTHH-----HHGGG--SST--T-HHHHTSSSS-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHH-HHHHhcchHHHH-----HHheeecCCC--C-cCceEEeccc
Confidence 4566677788888999987644332 222233 345666666543 3444321111 1 1122 67789
Q ss_pred ccHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 171 TDPVAVVALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248 (1079)
Q Consensus 171 TDPvaVvaILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~ 248 (1079)
||.+-.++++.=+| +|..++..+..=+.++|..|+++..++.+ ++.++... ....++++ ..
T Consensus 128 TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L-------~~a~~~~~------~l 190 (378)
T PF06965_consen 128 TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWL-------LLAAAALL------LL 190 (378)
T ss_dssp --HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHH-------HHHHHHHH------HH
T ss_pred ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHH-------HHHHHHHH------HH
Confidence 99999999987665 89999999999999999999999888764 23333221 11111111 11
Q ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhccccc---ccchhhHHHHHHHHHHHHHHHH
Q 001423 249 LWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA---FKGESQQSLHYFWEMVAYIANT 324 (1079)
Q Consensus 249 ~~l~~~~-~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~---~~~~~~~~l~~fwe~ls~l~~~ 324 (1079)
+.+++.. ++...+ +.+....++.- ..-|.+.-+|-++.|+++....+.. ..+..++..|.+...+.++..|
T Consensus 191 ~~l~r~~v~~~~~Y----~~~G~~lW~~~-l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlP 265 (378)
T PF06965_consen 191 FVLNRLGVRSLWPY----LLLGILLWYAV-LKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILP 265 (378)
T ss_dssp HHHHHTT---THHH----HHHHHHHHHHT-TTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHCCCceehHH----HHHHHHHHHHH-HHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHH
Confidence 2233322 122222 22233344333 5568888899999999997644432 1111222223333334455454
Q ss_pred HH-HHhhhhhhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCChHHHHHHHhhhhH
Q 001423 325 LI-FILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-----GYGLEWKEAIILVWSGLR 398 (1079)
Q Consensus 325 l~-FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~-----g~~ls~re~~vl~wgGlR 398 (1079)
+| |.=.|+.++...+. ...-...+.+.+..+++|.++++...+...+. ..+++|++..-++. -
T Consensus 266 lFAlaNAGV~l~~~~~~--------~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~---L 334 (378)
T PF06965_consen 266 LFALANAGVSLSGSSLG--------DLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL---L 334 (378)
T ss_dssp HHHHHHS----SSS-----------THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH---H
T ss_pred hHhheeCceEEecCchH--------hhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH---H
Confidence 43 44467766432221 01112233456677889999997766554333 34567776655544 3
Q ss_pred HHHHHHHHHhh
Q 001423 399 GAVALSLSLSV 409 (1079)
Q Consensus 399 GaVsLaLAl~v 409 (1079)
+.+.+.+++.+
T Consensus 335 aGIGFTmSLFI 345 (378)
T PF06965_consen 335 AGIGFTMSLFI 345 (378)
T ss_dssp TT--HHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 29
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.037 Score=62.30 Aligned_cols=265 Identities=16% Similarity=0.196 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhcCChHHHHH---hhhHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHH
Q 001423 104 VFLPALLFESSFAMEVHQIKR---CLVQMI---LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1079)
Q Consensus 104 lfLp~LLF~aGl~ld~~~lrr---~~~~il---lLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVv 177 (1079)
-...+..+..|+|+..+.+.- ++++.. .-|..|++++.. +|+++..+-| ...===+|-++||.+-+.
T Consensus 69 gLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n~~~p--~~~~GWaIP~ATDiAFAl 141 (390)
T COG3004 69 GLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALNAGDP--ATLEGWAIPMATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----HhheeecCCh--hhhcCcCcccHHHHHHHH
Confidence 334445566788776554432 233222 234455555443 3333321111 111111677899999999
Q ss_pred HHHhhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001423 178 ALLKELG--ASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIF 255 (1079)
Q Consensus 178 aILkelg--l~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~ 255 (1079)
.++.=+| +|..+.-.+..=++++|.-++++..++.+ .+.++... ++. ++++..+ ..+++..
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls~~al---------~~a--~~~i~vL--~~lN~~~ 204 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLSMAAL---------GIA--ALAIAVL--AVLNRLG 204 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCccHHHH---------HHH--HHHHHHH--HHHHHhC
Confidence 9988776 89999999999999999999998877654 34443322 111 1111111 1222221
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHH-HHhhhhhh
Q 001423 256 NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLI-FILSGVVI 334 (1079)
Q Consensus 256 ~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~-FillGl~I 334 (1079)
- + ....-+++....++.- ..-|++.-+|.++.|+++.-..+..-+|- ++..|....-++|+..|+| |.=.|+.+
T Consensus 205 v-~--~l~~Y~~~gviLW~~v-lkSGVHATLAGVi~~f~IPl~~k~~~spl-~~leh~L~pwvaf~IlPlFaFaNAGvsl 279 (390)
T COG3004 205 V-R--RLSPYLLVGVILWIAV-LKSGVHATLAGVILAFFIPLKTKEGESPL-ERLEHALHPWVAFFILPLFAFANAGVSL 279 (390)
T ss_pred c-h--hhhHHHHHHHHHHHHH-HHhhhHHHHHHHHHHeeeeccCCCCCCcH-HHHHHHhhhhHHHHHHHHHHHccCCccc
Confidence 1 1 1112222222222222 33477777888888888764333322221 2222333333566666654 55577766
Q ss_pred hccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hcCCCChHHHHHHHh-hhhHHHHHHHH
Q 001423 335 AEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRN-----FGYGLEWKEAIILVW-SGLRGAVALSL 405 (1079)
Q Consensus 335 ~~~vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~-----~g~~ls~re~~vl~w-gGlRGaVsLaL 405 (1079)
.--.+ . ...-...+.+.+..+++|.++++.+++.--+ ...+.+|++..-++. +|.-=.+++-+
T Consensus 280 ~g~~~--~------~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI 348 (390)
T COG3004 280 QGVSL--S------GLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFI 348 (390)
T ss_pred ccccc--c------ccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 42111 1 1112234556677889999999887765433 345788888776665 34433333333
No 30
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.06 E-value=0.18 Score=57.70 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=94.9
Q ss_pred cccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHH
Q 001423 55 RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAG 134 (1079)
Q Consensus 55 rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv 134 (1079)
....+++.+.-+++|+++|....+.++ ...+++ ....+ .+|..=+-.-|+++++.++.+.+.+.+...+
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~---~~~~Gi----~~~~k----~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~ 90 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPA---RFKPGI----KFSSK----KLLRLGIVLLGFRLSFSDILALGWKGLLIII 90 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcH---HHHhHH----HHHHH----HHHHHHHHHHCccccHHHHHHhCccHHHHHH
Confidence 347889999999999999962222221 111221 11123 3444444556899999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 135 PGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQM 214 (1079)
Q Consensus 135 ~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~ 214 (1079)
..++++.+++-++..-.+ +++...+.++|+=.|.=...|+.++-.-++.+++-.....+--.+=..+++++|-++...
T Consensus 91 ~~v~~~~~~~~~lg~r~~--~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~ 168 (305)
T PF03601_consen 91 IVVILTFLLTYWLGRRLF--GLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHA 168 (305)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHH
Confidence 777776655444441333 789999999997777777777777666666555544444444444455677777666555
Q ss_pred H
Q 001423 215 V 215 (1079)
Q Consensus 215 ~ 215 (1079)
.
T Consensus 169 l 169 (305)
T PF03601_consen 169 L 169 (305)
T ss_pred h
Confidence 4
No 31
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.53 E-value=0.075 Score=66.50 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHH
Q 001423 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1079)
Q Consensus 101 ~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPva 175 (1079)
|-.+++|++....|+++|+..+..++..++.+.+..+++-.+.+.....+ + ++++..++.+|.++++-...+
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~--g~~~~~a~~~gl~L~~~Gef~ 340 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L--GVPRKQRRWFAVLLGQGGEFA 340 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCCHhHHHHHHHHHhccccHH
Confidence 66778888888889999999988877766655544444444443333333 3 899999999999998765443
No 32
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.49 E-value=0.09 Score=65.61 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHH
Q 001423 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1079)
Q Consensus 100 l~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaV 176 (1079)
-|..+++|+.....|+.+|++.+..++..++.+.+..+++-.+.+..... .+ +++|..++.+|..+++....+.
T Consensus 265 pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~--g~~~~~al~~g~~L~~~Gef~~ 338 (601)
T PRK03659 265 PFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY--GLRSSERMQFAGVLSQGGEFAF 338 (601)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHhccccHHH
Confidence 36678888888899999999999888776665544444444444333333 32 8899999999999888765443
No 33
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.29 E-value=3.2 Score=48.20 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=86.1
Q ss_pred cccCCcHHHHHHHHHHHhccccc-ccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 001423 55 RGTRVPYTVALLIIGIALGSLEY-GTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA 133 (1079)
Q Consensus 55 rrl~lP~~V~lil~GIlLGp~~~-g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLA 133 (1079)
++.++++.+.-+++|+++|.... +.+. ...+++ ....+.++.+++ -.-|+++++.++.+.+.+.+.+.
T Consensus 27 ~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~Gi----~f~~k~lLr~gI----VLlG~~l~~~~i~~~G~~~l~~~ 95 (335)
T TIGR00698 27 ADPALSALFLAILLGMVAGNTIYPQRDE---EKKRGV----LFAKPFLLRIGI----TLYGFRLTFPYIADVGPNEIVAD 95 (335)
T ss_pred ccCCCcHHHHHHHHHHHHhccccccchh---hccchH----HHHHHHHHHHHH----HHHCccccHHHHHHhhHHHHHHH
Confidence 45689999988999999997421 1111 111111 112234445444 34588999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQ 213 (1079)
Q Consensus 134 v~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~ 213 (1079)
...+..+.++..++..-.+ +++...++++|+=.|.=...|+.++-.-++.+++-.....+--.+=+..++++|-.+..
T Consensus 96 ~~~v~~~~~~~~~~g~k~l--~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~ 173 (335)
T TIGR00698 96 TLILTSTFFLTVFLGSSRL--KLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYH 173 (335)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHH
Confidence 6655554444344442233 77888888888644444444444444444544444334333334444567777766655
Q ss_pred HH
Q 001423 214 MV 215 (1079)
Q Consensus 214 ~~ 215 (1079)
+.
T Consensus 174 ~l 175 (335)
T TIGR00698 174 YA 175 (335)
T ss_pred HH
Confidence 54
No 34
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.68 E-value=6.7 Score=46.72 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHH---HHcccCCcHHHHHHHH---HHHhcccccccccccCcccccccccccCCHHHHHHHH
Q 001423 32 NPTDAVIFVGISLVLGIACRH---LLRGTRVPYTVALLII---GIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVF 105 (1079)
Q Consensus 32 ~~~~~lL~l~ilLllg~~~~~---L~rrl~lP~~V~lil~---GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lf 105 (1079)
+....+.+.++++++|..++. +++|+.+|.+|.==++ ++++++...+. . ..+|.+ +...+
T Consensus 4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~---------~----~~fd~~-l~~~l 69 (398)
T TIGR00210 4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGT---------E----VNFDFS-LRDPL 69 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccE---------E----EEcChh-HHHHH
Confidence 455667788888999998875 5689999988652222 23333321110 0 223333 22333
Q ss_pred HHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHccCCCcHHHHHHHH
Q 001423 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTF--FLGAALKLTFPYDWSWKTSLLLG 165 (1079)
Q Consensus 106 Lp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~--lvg~~l~~l~p~~ls~~~ALLLG 165 (1079)
+.+..=..|+..+++.+|+-.++.+.+....+++... ++|..+..++ |++...+++.|
T Consensus 70 m~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~--gl~P~~Gll~g 129 (398)
T TIGR00210 70 MLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLL--GQAPLMGLLAG 129 (398)
T ss_pred HHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHhh
Confidence 3222233478888899999888886665553333221 1222222232 56665565554
No 35
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.47 E-value=0.25 Score=63.93 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHH
Q 001423 101 LLAVFLPALLFESSFAMEVHQIKRCL--VQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA 175 (1079)
Q Consensus 101 ~l~lfLp~LLF~aGl~ld~~~lrr~~--~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPva 175 (1079)
...+|+|+.....|+++|+..+.... ..++++.+.+++.-.+ .+++...++ +++|..++.+|.++++-.-+.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~-g~~l~a~~~--g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIM-GTIIIAFFY--TMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHh--CCCHHHHHHHHHHHhcccHHH
Confidence 35678899999999999998875321 1212221222222112 222222222 899999999999999876444
No 36
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.41 E-value=0.57 Score=58.00 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHH
Q 001423 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1079)
Q Consensus 101 ~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaV 176 (1079)
+..+|+|+.....|+++|+..+.++...++.+.+..++.-++.+. .....+ +++|..++.+|.++++......
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~-~~~~~~--g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAF-FLVRLF--GHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh--CCChhhHHHHHHHHhcccchHH
Confidence 456788888888999999999887654444332222222222222 222222 7899999999999987655443
No 37
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=94.26 E-value=1.2 Score=52.90 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=78.6
Q ss_pred HHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHH-HHHHHHHHHHhhcCChHHHHH
Q 001423 46 LGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLA-VFLPALLFESSFAMEVHQIKR 124 (1079)
Q Consensus 46 lg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~-lfLp~LLF~aGl~ld~~~lrr 124 (1079)
+...+..++...++.+.++-+++|+++.-..+.-++ ..-+-+-+-+ +|+|+.....|+.+|++.+..
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~------------l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~ 297 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHE------------LEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE 297 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHH------------HHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc
Confidence 333444555667888999999999988875332000 1122345777 889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHH
Q 001423 125 CLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1079)
Q Consensus 125 ~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVv 177 (1079)
++..++.+....++.-.....+.. ..+ +++...++..|...++.-..+.+
T Consensus 298 ~~~~~l~~~~~~i~~K~~~~~~~~-~~~--g~~~~~~~~~g~~~~~~ge~~~v 347 (397)
T COG0475 298 NLLLILLLVALAILGKILGAYLAA-RLL--GFSKRLALGIGLLLRQGGEFAFV 347 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHH--cCcHHHHHHHHhhhhhhhHHHHH
Confidence 988866665554444444333333 333 67888888888888775555544
No 38
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=94.11 E-value=16 Score=43.25 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHH
Q 001423 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGV 137 (1079)
Q Consensus 58 ~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gv 137 (1079)
.+|.++..++.|+++.... ..+ .+ . ..--.+.+...++|.-++.-=++.|+|+++|..++.+. ++..-
T Consensus 24 ~l~~~vl~~~~~~~lsnlg--li~-----~p---~-~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~ 91 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLG--LID-----SP---A-SSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIG 91 (378)
T ss_pred hcCHHHHHHHHHHHHHHCC--CcC-----CC---C-cchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHH
Confidence 6899999999999998752 110 00 0 00113556777788888888888999999998887764 34434
Q ss_pred HHHHHHHHHHHHHHcc
Q 001423 138 MISTFFLGAALKLTFP 153 (1079)
Q Consensus 138 lit~~lvg~~l~~l~p 153 (1079)
.+++++.+.+.+++++
T Consensus 92 ~~g~viG~~va~~l~~ 107 (378)
T PF05684_consen 92 AVGTVIGAVVAFLLFG 107 (378)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445555555555554
No 39
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.70 E-value=12 Score=43.21 Aligned_cols=144 Identities=21% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhcccc
Q 001423 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA---GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATD 172 (1079)
Q Consensus 96 i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLA---v~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTD 172 (1079)
+++|....+.+..+.|..|++++.+++++..++.-... ....++..+ +++.+..+.+ . .....+..|-++.+.=
T Consensus 27 ~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pl-l~~~~~~l~~-~-~~~~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 27 IKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPL-LGFGLSRLFP-A-FLPPELALGLLILACL 103 (313)
T ss_pred cchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHHHHHHHhh-c-cCCHHHHHHHHHHhhC
Confidence 44566677778889999999999999987654432221 111222222 2333333332 1 1123355554443333
Q ss_pred HHHH---HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 173 PVAV---VALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVL-GKS--FGWGAIIKFLAQVSLGAVGMGLAFGI 245 (1079)
Q Consensus 173 PvaV---vaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~-~~~--~s~~~i~~fl~~v~lGgiliGlv~G~ 245 (1079)
|..+ +..-+.-|-|... ....+.++...++++.=+.+.+.. +++ .+...++..+...++.-.++|.++..
T Consensus 104 PtTv~S~v~~T~~AgGN~a~---Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~ 179 (313)
T PF13593_consen 104 PTTVSSSVVLTRLAGGNVAL---ALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRR 179 (313)
T ss_pred CchhhHHHHHHHHcCCCHHH---HHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2333444444332 233455566677777777666655 332 34444443333333333334444443
No 40
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.12 E-value=3.6 Score=43.57 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHH-HHccCCCcHHHHHHHHhHhccccHHHHHHH
Q 001423 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF---LGAALK-LTFPYDWSWKTSLLLGGLLSATDPVAVVAL 179 (1079)
Q Consensus 104 lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~l---vg~~l~-~l~p~~ls~~~ALLLGAIlSaTDPvaVvaI 179 (1079)
+.+..++|..|++++++++++..++.-.+. .|++...++ +++.+. .++ +....+..|.++.+..|.+..+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~~~----~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWLLL----PLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-HHT----T--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCcHHHHH
Confidence 457789999999999999998765533321 222222222 233332 333 33444555555555445444433
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 001423 180 LKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGK 218 (1079)
Q Consensus 180 Lkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~ 218 (1079)
.-..-+..+.. +-.+-..+|...++++.-+...+..+.
T Consensus 77 ~~t~l~~Gd~~-ls~~lt~istll~~~~~P~~~~l~~~~ 114 (187)
T PF01758_consen 77 VFTYLAGGDVA-LSVSLTLISTLLAPFLMPLLLYLLSGG 114 (187)
T ss_dssp HHHHHTT--HH-HHHHHHHHHHHHHHHHHHHHHHHHH-G
T ss_pred HHHHHhCCCcc-cccceeeHHHHHHHHHHHHHHHHHhcc
Confidence 32211222222 444456666677777666665555433
No 41
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.03 E-value=0.9 Score=56.37 Aligned_cols=131 Identities=22% Similarity=0.223 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHH-cccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhh
Q 001423 37 VIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1079)
Q Consensus 37 lL~l~ilLllg~~~~~L~-rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl 115 (1079)
++.+++++.+|++.+++- +.+++-.+.+-+++|+++|.+.+ .+ |+.+..+++.+.+|..|+
T Consensus 12 ~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~-----------------~i-~~~v~~~gl~lFvy~vG~ 73 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI-----------------QI-DPGVKAVFFALFIFAIGY 73 (562)
T ss_pred HHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC-----------------CC-ChHHHHHHHHHHHHHhhh
Confidence 666777778888887763 45777767788999999997521 12 334778999999999999
Q ss_pred cCChHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCC
Q 001423 116 AMEVHQI---KRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAS 186 (1079)
Q Consensus 116 ~ld~~~l---rr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~ 186 (1079)
+.-..-| |+...+..+++++.+++. +++.+.+.+++.++.+....++-||.-++..-.++...+.+++.+
T Consensus 74 ~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~ 146 (562)
T TIGR03802 74 EVGPQFFASLKKDGLREIILALVFAVSG-LITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLS 146 (562)
T ss_pred ccCHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCC
Confidence 9887555 455556666666555554 344555555664444566777777776665555555555666644
No 42
>COG0679 Predicted permeases [General function prediction only]
Probab=92.78 E-value=22 Score=40.82 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=76.3
Q ss_pred cchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHHHH
Q 001423 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (1079)
Q Consensus 283 SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~i 362 (1079)
++.+=+.++|+.++..+-. + ...+.+..+.++....++..+.+|+.+.....+ ......+......=
T Consensus 168 nP~i~a~i~g~~~~~~~i~-l----P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--------~~~~~~~~~~~~~k 234 (311)
T COG0679 168 NPLIIALILGLLLNLLGIS-L----PAPLDTAVDLLASAASPLALIALGLSLAFLKLK--------GSKPPIILIALSLK 234 (311)
T ss_pred CcHHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--------cccchhHHHHHHHH
Confidence 5555556667766532211 1 235677888899999999999999999752221 12222222111111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHHhhh
Q 001423 363 QVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVN 442 (1079)
Q Consensus 363 lv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTLlV~ 442 (1079)
++.-++.++.....+ +..-.+....++.-+.+.+..+..+|.....+. + .+...+++|.++.
T Consensus 235 ll~~Pl~~~~~~~~~---~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~-----------~----laa~~i~ist~ls 296 (311)
T COG0679 235 LLLAPLVALLVAKLL---GLSGLALQVLVLLSAMPTAVNAYVLARQYGGDP-----------R----LAASTILLSTLLS 296 (311)
T ss_pred HHHHHHHHHHHHHHc---CCChHHHHHHHHHhhCcHHhHHHHHHHHhCCCh-----------H----HHHHHHHHHHHHH
Confidence 233333333322222 223334444444446678888777776532211 1 3455777788877
Q ss_pred hhhHHHHHHHc
Q 001423 443 GSTTQYILHLL 453 (1079)
Q Consensus 443 G~tl~~Llr~L 453 (1079)
-.++|.+.-.+
T Consensus 297 ~~t~p~~~~~l 307 (311)
T COG0679 297 LLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHH
Confidence 77777665544
No 43
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.21 E-value=27 Score=40.52 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHH-HHccCCCcHHHHHHHHhHhccccHHHHHHH
Q 001423 104 VFLPALLFESSFAMEVHQIKRCLVQ---MILLAGPGVMISTFFLGAALK-LTFPYDWSWKTSLLLGGLLSATDPVAVVAL 179 (1079)
Q Consensus 104 lfLp~LLF~aGl~ld~~~lrr~~~~---illLAv~gvlit~~lvg~~l~-~l~p~~ls~~~ALLLGAIlSaTDPvaVvaI 179 (1079)
+++.+++|..|++++++++++..++ ++.--+...++..++ ++.+. .+++ .+ ..+..|-++.+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pll-a~~l~~l~~~--~~--p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFL-MFLLAWLFLR--DL--FEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHHHHHHcC--CC--HHHHHHHHHHHhcchHHHHH
Confidence 4566789999999999999986554 333222333333333 33332 2322 22 33555555544444444433
Q ss_pred H-hhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 180 L-KEL-GASKKLNTIIEGESLMNDGTAIVVYQLFF 212 (1079)
Q Consensus 180 L-kel-gl~~rL~~LIeGESLlNDa~AIVLf~l~l 212 (1079)
. ..+ |-+-.+...+ ..+|-..+++++-...
T Consensus 122 v~T~lAkGnvalsv~l---t~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 122 VWNQLAKGDPEYTLVL---VAVNSLFQVFLYAPLA 153 (328)
T ss_pred HHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3 222 2233333332 2555666666654443
No 44
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.71 E-value=31 Score=40.05 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=91.2
Q ss_pred HcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 001423 54 LRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLA 133 (1079)
Q Consensus 54 ~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLA 133 (1079)
....++|..+.-+++||++|.+. .... ....++ ......++.+++. .-|+++++.++...+.+.+.+.
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~-~~~~---~~~~GI----~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~ 99 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILP-QIPA---QTSAGI----TFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLII 99 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccc-cchh---hhccch----hhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHH
Confidence 35678999999999999999542 1111 122222 3344555555543 4589999999999988888765
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGA-SKKLNTIIEGESLMNDGTAIVVYQLFF 212 (1079)
Q Consensus 134 v~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl-~~rL~~LIeGESLlNDa~AIVLf~l~l 212 (1079)
.. ++.++++.++.+.-++ ++++..+++.|+-.|.=...|+.++---.+. +++...-+-.-.+++- +++++|-...
T Consensus 100 ~~-~l~~t~~~~~~lg~~l--gld~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgt-ia~llyP~l~ 175 (334)
T COG2855 100 AI-TLSSTFLFAYFLGKLL--GLDKKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGT-LAMLLYPLLY 175 (334)
T ss_pred HH-HHHHHHHHHHHHHHHh--CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHH-HHHHHHHHHH
Confidence 44 4455555555555454 8999999999976665555555554433443 3445554555555544 4556666655
Q ss_pred HHH
Q 001423 213 QMV 215 (1079)
Q Consensus 213 ~~~ 215 (1079)
.+.
T Consensus 176 ~~l 178 (334)
T COG2855 176 PLL 178 (334)
T ss_pred HHh
Confidence 554
No 45
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=90.72 E-value=26 Score=40.44 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHccCCCcHHHHHHHHhHhccccHHHHH
Q 001423 101 LLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF---LGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1079)
Q Consensus 101 ~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~l---vg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVv 177 (1079)
....++..++|..|+.+..+++++..++.... ..|++.+..+ +|+.+...+ +...-+..|-++..+-|..+.
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~----~l~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLF----PLPPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHc----CCCHHHHHhHHheeeCCCchh
Confidence 44788999999999999999999765544322 2223333322 233333333 345556666666666665555
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSF--GWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGF 253 (1079)
Q Consensus 178 aILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~--s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~ 253 (1079)
++.-..-+..++. +-....-++-..++++.-+.+.+..++.. +.+.....+.+..+.-+++|.++-.....|.++
T Consensus 114 S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~ 190 (319)
T COG0385 114 SNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVER 190 (319)
T ss_pred HHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5332211222222 12233344445566665555555554432 444444433333343344555555444444433
No 46
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.70 E-value=2.7 Score=44.13 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHH--cccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCC
Q 001423 41 GISLVLGIACRHLL--RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118 (1079)
Q Consensus 41 ~ilLllg~~~~~L~--rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld 118 (1079)
++.+.+|.+.+.+- +.+++-...+-+++|+++|...... .+. . ..--++.+-.++|.+.++..|++.-
T Consensus 3 fl~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~-----~~~--~---~~~~~~~l~~~GL~lFl~~VGl~aG 72 (169)
T PF06826_consen 3 FLGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTG-----PIF--L---PISAPSFLRQLGLALFLAAVGLSAG 72 (169)
T ss_pred hHHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhcc-----CCC--C---CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665543 4566667778899999999762110 000 0 1223567888899999999888765
Q ss_pred h---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcH--HHHHHHHhHhccccHHHHHHHHh
Q 001423 119 V---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW--KTSLLLGGLLSATDPVAVVALLK 181 (1079)
Q Consensus 119 ~---~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~--~~ALLLGAIlSaTDPvaVvaILk 181 (1079)
. +.+|+...+.+.+++.-++++.++.....++++ ++++ ....+-|+. |+|++..+..+
T Consensus 73 ~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~--~l~~~~~~G~~aGa~---T~tp~L~~A~~ 135 (169)
T PF06826_consen 73 PGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLF--KLNPGIAAGILAGAL---TSTPALAAAQE 135 (169)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHccc---cCcHHHHHHHH
Confidence 4 445667777777777777777666666665565 4443 333343433 44444444333
No 47
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=89.94 E-value=0.49 Score=43.70 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=50.0
Q ss_pred cCCccccCCccchhhhhcCCCccchhcccceeeeeccchHHHHHHHhcChhhHHHHH
Q 001423 728 LHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 784 (1079)
Q Consensus 728 ~~p~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~ 784 (1079)
..-.++.|...|.++.+.+.++-+.+.|.+-+.++.|+.+.+++++++||+++..+|
T Consensus 59 ~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 115 (115)
T cd00038 59 IVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115 (115)
T ss_pred EEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhcC
Confidence 334456788899999988899999999999999999999999999999999998764
No 48
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.91 E-value=13 Score=38.29 Aligned_cols=124 Identities=21% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcccCCcH--HHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChH
Q 001423 43 SLVLGIACRHLLRGTRVPY--TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120 (1079)
Q Consensus 43 lLllg~~~~~L~rrl~lP~--~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~ 120 (1079)
.++++.+.+.+++++++|. .++=++++.++... +.. ..--|..+......++=...|.+++..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~-------------~~~~P~~~~~~~qviiG~~iG~~f~~~ 67 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGL-------------EITLPPWLLALAQVVIGILIGSRFTRE 67 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCc-------------cCCCCHHHHHHHHHHHHHHHHccCCHH
Confidence 3455666667778889984 33333333333311 000 012366777788888888889998887
Q ss_pred HHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCC
Q 001423 121 QIKRCLVQMI--LLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAS 186 (1079)
Q Consensus 121 ~lrr~~~~il--lLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~ 186 (1079)
.+++..+... +..+..+++..++.++.++... ++++.++++ | .+|-....+..+-++.|++
T Consensus 68 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~--~~~~~ta~L-a--~~PGGl~~m~~~A~~~gad 130 (156)
T TIGR03082 68 VLAELKRLWPAALLSTVLLLALSALLAWLLARLT--GVDPLTAFL-A--TSPGGASEMAALAAELGAD 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH-H--hCCchHHHHHHHHHHhCCC
Confidence 7765443332 2233333344455566665554 789988864 3 2344444444455666654
No 49
>PRK03818 putative transporter; Validated
Probab=89.61 E-value=3.6 Score=51.03 Aligned_cols=120 Identities=17% Similarity=0.239 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-cccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCH---HHHHHHHHHH
Q 001423 33 PTDAVIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPA 108 (1079)
Q Consensus 33 ~~~~lL~l~ilLllg~~~~~L~-rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~p---el~l~lfLp~ 108 (1079)
....++.+++.+.+|.+.+++- +.+++- +.+-+++|+++|.... .++ ..+++ +.+-.++|.+
T Consensus 4 ~~~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~----~~~---------~~~~~~~~~~~~~~gl~l 69 (552)
T PRK03818 4 IALTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVS----QFG---------LTLDSDMLHFIQEFGLIL 69 (552)
T ss_pred hhHHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccc----ccC---------cccChHHHHHHHHHHHHH
Confidence 3455777788888888887642 233343 3677888999886421 011 11222 3466789999
Q ss_pred HHHHHhhcCChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhH
Q 001423 109 LLFESSFAMEVHQ---IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGL 167 (1079)
Q Consensus 109 LLF~aGl~ld~~~---lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAI 167 (1079)
.+|..|++.-..- +|+...+..+++++.++++.++ ++++++++.+++.....++-|+.
T Consensus 70 Fv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~ 130 (552)
T PRK03818 70 FVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV-TAILHKLFGIPLPVMLGIFSGAV 130 (552)
T ss_pred HHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhccc
Confidence 9999999877654 4555556666666655554444 55556665333333344444443
No 50
>PRK04972 putative transporter; Provisional
Probab=88.95 E-value=4.3 Score=50.44 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHH-cccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhh
Q 001423 37 VIFVGISLVLGIACRHLL-RGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSF 115 (1079)
Q Consensus 37 lL~l~ilLllg~~~~~L~-rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl 115 (1079)
++.+++.+.+|++.+++- +.+++-...+-+++|+++|.+.+ .+ +..+..++|.+.+|..|+
T Consensus 14 ~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~-----------------~~-~~~~~~~gl~lF~~~vG~ 75 (558)
T PRK04972 14 ILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHF-----------------SI-NTDALNLGFMLFIFCVGV 75 (558)
T ss_pred hHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCC-----------------CC-ChHHHHHHHHHHHHHHhh
Confidence 566666777777777653 45667777788999999997521 12 333567888899999998
Q ss_pred cCChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhc
Q 001423 116 AMEVHQ---IKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKEL 183 (1079)
Q Consensus 116 ~ld~~~---lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkel 183 (1079)
+.-..- +|+...+...++++.+++..++ ++.+..++.++......++-|+.-++..-.++...++..
T Consensus 76 ~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~ 145 (558)
T PRK04972 76 EAGPNFFSIFFRDGKNYLMLALVMVGSALVI-ALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHS 145 (558)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHhhccccCcHHHHHHHHHHhcc
Confidence 876544 4555666666666655555444 334444453233334445555443333333333333333
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.61 E-value=5.8 Score=45.45 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH--hHhccccHHHHHH
Q 001423 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG--GLLSATDPVAVVA 178 (1079)
Q Consensus 105 fLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG--AIlSaTDPvaVva 178 (1079)
.+|+..|.-|.++|++++.+.+.+.+++++..++++.+. ++++.-++ +.+-..+++.| +=-+.--|++|.+
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~-~~~i~rll--g~~~~~g~li~stAGnAIcgpAAVaA 269 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF-NIFADRLV--GGTGIAGAAASSTAGNAVATPLAIAA 269 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHh--CCChhHHHHHHHHhhHHHHHHHHHHH
Confidence 688889999999999999999999999988777665544 44444343 67777777777 4444444555543
No 52
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=88.58 E-value=55 Score=38.08 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHh---hhHHHHHHHHH
Q 001423 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRC---LVQMILLAGPG 136 (1079)
Q Consensus 60 P~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~---~~~illLAv~g 136 (1079)
+.....+++|+.+|....+....+|... .-.-+.-..+++..++|--=.++|++++++. .++.++.-+..
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~-------~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~N 90 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLE-------FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVN 90 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccce-------eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHH
Confidence 4455667889988876444322222110 0112223345555666666678899888765 44444444445
Q ss_pred HHHHHHHHHHHHHHHccCCCc-HHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 137 VMISTFFLGAALKLTFPYDWS-WKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215 (1079)
Q Consensus 137 vlit~~lvg~~l~~l~p~~ls-~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~ 215 (1079)
.++..++...+++++++ +.| ...++.+-++.-+|+=+.|-+ ++ .+.=.....+--.+||...+++|.....+.
T Consensus 91 wii~P~lm~~la~~fl~-~~pey~~GlILlglApC~aMVivw~---~L--a~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~ 164 (342)
T COG0798 91 WIIGPLLMFALAWFFLP-DEPEYRAGLILLGLAPCIAMVIVWS---GL--AKGDRELTLVLVAFNSLLQIVLYAPLGKFF 164 (342)
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHhhhhHHHHHHHH---hh--ccCcHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544 444 233333333333333333332 22 222233344556789999999887765544
Q ss_pred c---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001423 216 L---GKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1079)
Q Consensus 216 ~---~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~ 256 (1079)
. ..+.++..++.-+.. . +++=++.|.+.+.++.+...
T Consensus 165 l~v~~~~v~~~~i~~Sv~l-y---l~iPli~G~lTR~i~~k~kg 204 (342)
T COG0798 165 LGVISISVPFWTIAKSVLL-Y---LGIPLIAGVLTRYILIKKKG 204 (342)
T ss_pred HhhccccccHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHhcc
Confidence 3 234566655443321 1 22446666666666555443
No 53
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.44 E-value=53 Score=37.88 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHHHhHhccccHHHHHHHHhhc
Q 001423 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YDWSWKTSLLLGGLLSATDPVAVVALLKEL 183 (1079)
Q Consensus 105 fLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p-~~ls~~~ALLLGAIlSaTDPvaVvaILkel 183 (1079)
.+...+|-.|-++|++...+..++-..+-..=+++..+ +|+.+..+++ .|+--...+.+=+.++.+....-.++..+.
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~-~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~y 128 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIV-IGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEF 128 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHH-HHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHc
Confidence 35667899999999998877777666665555555443 3444444443 222112344444555556666666666666
Q ss_pred CCC
Q 001423 184 GAS 186 (1079)
Q Consensus 184 gl~ 186 (1079)
|-+
T Consensus 129 G~~ 131 (312)
T PRK12460 129 GDE 131 (312)
T ss_pred CCH
Confidence 533
No 54
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=88.08 E-value=53 Score=37.32 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCChHHHHHhhhH--HHHHHHH-HHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHH--
Q 001423 106 LPALLFESSFAMEVHQIKRCLVQ--MILLAGP-GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL-- 180 (1079)
Q Consensus 106 Lp~LLF~aGl~ld~~~lrr~~~~--illLAv~-gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaIL-- 180 (1079)
+..++|..|..++.+++++..++ ....++. ..++..++. +.+..++ +. ...+..|.++.+.-|.++.+..
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~--~l--~~~~~~glvL~~~~P~~~~s~v~t 88 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF--KL--PPELAVGVLIVGCCPGGTASNVFT 88 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh--CC--CHHHHHHHHheeeCCCchHHHHHH
Confidence 88899999999999999987762 2222222 233333332 3332333 23 3455566666555555554422
Q ss_pred hhcCCCchHHHHHHHHHH
Q 001423 181 KELGASKKLNTIIEGESL 198 (1079)
Q Consensus 181 kelgl~~rL~~LIeGESL 198 (1079)
+..|-+..+...+..-|-
T Consensus 89 ~~~~gn~~la~~~~~~st 106 (286)
T TIGR00841 89 YLLKGDMALSISMTTCST 106 (286)
T ss_pred HHhCCCHhhhhHHHHHHH
Confidence 444566666555444333
No 55
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=88.02 E-value=12 Score=42.98 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHH---HhhcccchHHHHHHHHhhhh-cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 001423 262 IALTLAVSYIAFFTAQ---EGADVSGVLTVMTLGMFYAA-VARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 337 (1079)
Q Consensus 262 i~ltLal~ylay~iAe---E~lg~SGVLAvvvaGLvls~-~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~ 337 (1079)
+.++++++..+|+++. ...+.+.++=+.+.|++++| .-+. + +..++=.+.....+.-+=-+++|..++..
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~---~---~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~ 76 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGL---P---ARFKPGIKFSSKKLLRLGIVLLGFRLSFS 76 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCC---c---HHHHhHHHHHHHHHHHHHHHHHCccccHH
Confidence 3566777888888874 35788999999999999986 2211 1 11111111112112222236778887654
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHH-HHHhhhcccCC
Q 001423 338 ILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALS-LSLSVKRSSGG 415 (1079)
Q Consensus 338 vl~~~~~~~~~~~~~~~llll~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLa-LAl~v~~~~~~ 415 (1079)
.+.. ..+..++...+.+ ..++.+..++.+...+++.+...+++-| +.=|+-+.+ .+-.++...
T Consensus 77 ~i~~--------~G~~~~~~~~~~v-----~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-- 141 (305)
T PF03601_consen 77 DILA--------LGWKGLLIIIIVV-----ILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-- 141 (305)
T ss_pred HHHH--------hCccHHHHHHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC--
Confidence 3211 1111111121111 1122223345534457888988888886 344443332 222332211
Q ss_pred CcccccccccchHhhhhhhhhHHHhhhhhhHHHHHHHccCC
Q 001423 416 SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMD 456 (1079)
Q Consensus 416 ~~~~~~~~~~l~vf~t~gVVllTLlV~G~tl~~Llr~Lgl~ 456 (1079)
+ +. . ++.++|++--.+.=...|.+.+++++.
T Consensus 142 -----~---~~-a-~ava~V~lfg~vam~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 142 -----E---DV-A-YAVATVFLFGTVAMFLYPLLGHALGLS 172 (305)
T ss_pred -----C---ce-e-eeehHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 11 1 112222222223345588999999986
No 56
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=86.67 E-value=2.2 Score=45.61 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=58.8
Q ss_pred HHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCC-----hHHHHHhhhHHHHHHHHHHH
Q 001423 64 ALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME-----VHQIKRCLVQMILLAGPGVM 138 (1079)
Q Consensus 64 ~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld-----~~~lrr~~~~illLAv~gvl 138 (1079)
+.+++|+++|..... . . ..++......|..|+|..|.++- ++++|+..++++++.+. ++
T Consensus 3 ~~li~Gi~lG~~~~~------~--------~-~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tI 66 (191)
T PF03956_consen 3 IALILGILLGYFLRP------P--------F-SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TI 66 (191)
T ss_pred eeHHHHHHHHHHhcc------c--------c-cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HH
Confidence 457889999975210 0 0 11245677788999999999873 34566667888877665 44
Q ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHhHh
Q 001423 139 ISTFFLGAALKLTFPYDWSWKTSLLLGGLL 168 (1079)
Q Consensus 139 it~~lvg~~l~~l~p~~ls~~~ALLLGAIl 168 (1079)
+.+++.|+++..++ ++++..++.+|+=.
T Consensus 67 lGSllgg~l~~~ll--~~~~~~~lav~sG~ 94 (191)
T PF03956_consen 67 LGSLLGGLLASLLL--GLSLKESLAVASGF 94 (191)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHccC
Confidence 55566677666665 78999988888643
No 57
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.28 E-value=0.5 Score=42.41 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=45.1
Q ss_pred CCccccCCccchhhhhcCCCccchhcccceeeeeccchHHHHHHHhcChh
Q 001423 729 HPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPA 778 (1079)
Q Consensus 729 ~p~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 778 (1079)
...+..|...|..+++.+.++-++++|.+-+.++.|+.+.++.++++||+
T Consensus 42 ~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 42 IFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred ecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 34556788899999999999999999999999999999999999999996
No 58
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=86.25 E-value=58 Score=37.51 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccC-CC-----cHHHHHHHHhHhccccHHHHHH
Q 001423 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-DW-----SWKTSLLLGGLLSATDPVAVVA 178 (1079)
Q Consensus 105 fLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~-~l-----s~~~ALLLGAIlSaTDPvaVva 178 (1079)
.+..++|-.|-++|++...+..++-..+-+.=++++.+ +|+....+++. |. -=..++.+=+.++.+.+..-.+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~-lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGAL-LGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHH-HHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 36677999999999999999888888877777766544 45655555542 21 1135666667788899999999
Q ss_pred HHhhcCCCchH
Q 001423 179 LLKELGASKKL 189 (1079)
Q Consensus 179 ILkelgl~~rL 189 (1079)
+..+.|-..+.
T Consensus 129 L~~~yGd~~D~ 139 (314)
T PF03812_consen 129 LMGQYGDEEDV 139 (314)
T ss_pred HHHHhCCHHHh
Confidence 99998855443
No 59
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=84.34 E-value=35 Score=40.73 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHH
Q 001423 34 TDAVIFVGISLVLGIACRHLLRG--TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111 (1079)
Q Consensus 34 ~~~lL~l~ilLllg~~~~~L~rr--l~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF 111 (1079)
.+.+..+.+.+.+|.......+. ..+|.-+.-+++|+++....-... ..+ + .+-.-+.+..+.+-+++-
T Consensus 218 i~~l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~--~~~----~---~~~~i~~I~~~sLdlfl~ 288 (398)
T TIGR00210 218 IETIALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKK--FPW----V---AERAVSVIGNVSLSLFLA 288 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhC--ccc----c---chHHHHHHHHHHHHHHHH
Confidence 44455666677777777776654 789999999999999987521100 000 0 011234566777777888
Q ss_pred HHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHH----HHHhHhcccc--HHHHHHHHhhcCC
Q 001423 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSL----LLGGLLSATD--PVAVVALLKELGA 185 (1079)
Q Consensus 112 ~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~AL----LLGAIlSaTD--PvaVvaILkelgl 185 (1079)
.+=.++++..+...+.|++++.+.+++++.+..-++.+..++ =+.-.|. ..|--+.+|- -+-.-++-++.|.
T Consensus 289 ~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg--~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 289 IALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMG--KDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcc--chHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 888899999999999999999999999988776666666553 2332222 3343444433 3333467778883
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 186 -SKKLNTIIEGESLMNDGTAIVVYQLF 211 (1079)
Q Consensus 186 -~~rL~~LIeGESLlNDa~AIVLf~l~ 211 (1079)
|+-.--+=.--+.+-|.+-..+...+
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 44333333445566666555444443
No 60
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=84.27 E-value=84 Score=36.05 Aligned_cols=141 Identities=14% Similarity=0.026 Sum_probs=82.0
Q ss_pred ccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHHH
Q 001423 282 VSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIF 361 (1079)
Q Consensus 282 ~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~ 361 (1079)
.++++-+.++|++++..+-. ....+.+..++++....++.-+.+|+.+..... ..++.......++
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-----lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~---------~~~~~~~~~~~~~ 246 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-----MPGLILKSISILSGATTPMALFSLGLALSPRKI---------KLGVRDAILALIV 246 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhh---------ccChHHHHHHHHH
Confidence 36666677788887653321 134677888999999999999999988754221 1223322222222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHHhh
Q 001423 362 VQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIV 441 (1079)
Q Consensus 362 ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTLlV 441 (1079)
=++.=++.+++... .++.....+...++..+.+-+..+..+|.....+ . -.+...+++|.++
T Consensus 247 klil~P~i~~~~~~---~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~--------~-------~~aa~~v~~sT~l 308 (321)
T TIGR00946 247 RFLVQPAVMAGISK---LIGLRGLELSVAILQAALPGGAVAAVLATEYEVD--------V-------ELASTAVTLSTVL 308 (321)
T ss_pred HHHHHHHHHHHHHH---HhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCC--------H-------HHHHHHHHHHHHH
Confidence 22222222222221 2233445566677777777888877777643211 0 1345577778888
Q ss_pred hhhhHHHHHHHcc
Q 001423 442 NGSTTQYILHLLD 454 (1079)
Q Consensus 442 ~G~tl~~Llr~Lg 454 (1079)
.-.|+|.++..+|
T Consensus 309 s~~tlp~~~~l~~ 321 (321)
T TIGR00946 309 SLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHHHHHhC
Confidence 8788887766543
No 61
>PRK05326 potassium/proton antiporter; Reviewed
Probab=83.37 E-value=11 Score=47.03 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 001423 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGG 166 (1079)
Q Consensus 100 l~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGA 166 (1079)
.+..++.|++.+..|+.+|++.+.......+.+++..+++.=.+..+.. ..+++++|..++.+|-
T Consensus 274 ~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~--~~~~~~~~~e~~~i~~ 338 (562)
T PRK05326 274 GLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLS--LLPFRFNLREKLFISW 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCCCHhhhheeee
Confidence 3556777888888899999998876666555554333322211111111 1234778888877765
No 62
>COG2431 Predicted membrane protein [Function unknown]
Probab=83.08 E-value=18 Score=40.71 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCC---hH--HHHHhhhHHHHHHHH
Q 001423 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME---VH--QIKRCLVQMILLAGP 135 (1079)
Q Consensus 61 ~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld---~~--~lrr~~~~illLAv~ 135 (1079)
...+.+++|+++|.+... ...+++......|-.|+|..|.++. +. +.+=| ++.+.+++.
T Consensus 108 k~~~~vl~g~~~G~l~~~---------------~~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i 171 (297)
T COG2431 108 KLLGVVLLGLALGLLTGS---------------FLNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFI 171 (297)
T ss_pred HHHHHHHHHHHHHHHhcc---------------cccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHH
Confidence 456678888888875211 1123666777889999999999876 22 22223 445555544
Q ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHh
Q 001423 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGG 166 (1079)
Q Consensus 136 gvlit~~lvg~~l~~l~p~~ls~~~ALLLGA 166 (1079)
++++.+++|.+..++. ++|+..++.+++
T Consensus 172 -~ilssliGG~iaa~~l--~lpl~~~lAmas 199 (297)
T COG2431 172 -TLLSSLIGGLIAAFLL--DLPLTTGLAMAS 199 (297)
T ss_pred -HHHHHHHHHHHHHHHH--hccHHHHHHHHh
Confidence 5566677777776665 788888777765
No 63
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=82.19 E-value=38 Score=39.51 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHH----hhcccchHHHHHHHHhhhhc
Q 001423 262 IALTLAVSYIAFFTAQE----GADVSGVLTVMTLGMFYAAV 298 (1079)
Q Consensus 262 i~ltLal~ylay~iAeE----~lg~SGVLAvvvaGLvls~~ 298 (1079)
+.+++.+++.+++++.. ..+.+.++-+++.|++++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 34555666666666621 24788888899999999873
No 64
>COG2855 Predicted membrane protein [Function unknown]
Probab=82.14 E-value=28 Score=40.35 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=71.2
Q ss_pred HhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHH
Q 001423 278 EGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLIL 357 (1079)
Q Consensus 278 E~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~lll 357 (1079)
+..|.+..+=+.+.|++++++.+.. +....=.+.-+..+--+=-++.|+.++...+.+ .... .+.
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~------~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-----~G~~----~v~ 97 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIP------AQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-----VGGS----GVL 97 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccch------hhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-----cCcc----HHH
Confidence 4456678888888999987543321 111111111111222222467788886544321 0111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhh-hhHHHHHHHHH-HhhhcccCCCcccccccccchHhhhhhhh
Q 001423 358 LYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS-GLRGAVALSLS-LSVKRSSGGSSLITSETGTLFVFFTGGIV 435 (1079)
Q Consensus 358 l~v~ilv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wg-GlRGaVsLaLA-l~v~~~~~~~~~~~~~~~~l~vf~t~gVV 435 (1079)
+.+.++..=++.. .++.+ ..+++++.+..++.+ +.=|+-+.+.. -.++.. ..+.-+.++. ++
T Consensus 98 ~~~~~l~~t~~~~----~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~pvika~----------~~eva~aIa~-V~ 161 (334)
T COG2855 98 IIAITLSSTFLFA----YFLGK-LLGLDKKLALLIAAGSSICGASAIAATAPVIKAE----------EEEVAVAIAV-VV 161 (334)
T ss_pred HHHHHHHHHHHHH----HHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhCCcCCCC----------ccccceehhh-HH
Confidence 2222222222222 23433 348999999999985 66776655433 222211 1122222222 22
Q ss_pred hHHHhhhhhhHHHHHHHccCCC
Q 001423 436 FLTLIVNGSTTQYILHLLDMDK 457 (1079)
Q Consensus 436 llTLlV~G~tl~~Llr~Lgl~~ 457 (1079)
++.++ .-...|++..+++++.
T Consensus 162 lfgti-a~llyP~l~~~l~l~~ 182 (334)
T COG2855 162 LFGTL-AMLLYPLLYPLLGLSP 182 (334)
T ss_pred HHHHH-HHHHHHHHHHHhCCCc
Confidence 22222 2356789999999654
No 65
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=81.92 E-value=9.9 Score=48.76 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=9.2
Q ss_pred HhhcccchHHHHHHHHhhh
Q 001423 278 EGADVSGVLTVMTLGMFYA 296 (1079)
Q Consensus 278 E~lg~SGVLAvvvaGLvls 296 (1079)
+-+.++..+-.+++|++++
T Consensus 34 eRl~Ls~~~v~Ll~GiilG 52 (810)
T TIGR00844 34 EKLYIGESMVASIFGLIVG 52 (810)
T ss_pred hhcCCcHHHHHHHHHHHhh
Confidence 3444444444555555544
No 66
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=80.25 E-value=1.4e+02 Score=35.86 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-------cHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHH
Q 001423 34 TDAVIFVGISLVLGIACRHLLRGTRV-------PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFL 106 (1079)
Q Consensus 34 ~~~lL~l~ilLllg~~~~~L~rrl~l-------P~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfL 106 (1079)
.+.+--+++..++|.++.++-+|+.+ |.++.++.-..+.-. |+.. ....+.+..+ ++..-|+++++
T Consensus 28 ~~m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~---~~ip--~~~~~~v~~f--m~~~~Fl~ffI 100 (414)
T PF03390_consen 28 TDMIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYF---GLIP--ESVVEAVTNF--MKGSNFLYFFI 100 (414)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHc---CCCC--HHHHHHHHHH--hccCChHHHHH
Confidence 44555667777788888887765332 333332222222211 1100 0001111111 12234888999
Q ss_pred HHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001423 107 PALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGA 146 (1079)
Q Consensus 107 p~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~ 146 (1079)
..|+--+=+.||.+.+.|...+.+...+.+++.+.++++.
T Consensus 101 a~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~l 140 (414)
T PF03390_consen 101 AALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGL 140 (414)
T ss_pred HHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877777777665554443
No 67
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=80.11 E-value=14 Score=44.01 Aligned_cols=136 Identities=10% Similarity=0.111 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhc
Q 001423 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA 116 (1079)
Q Consensus 37 lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ 116 (1079)
++..+...++|.++.++ +++|..+.++++=+++-.. | .+.+.++.-...-.+++..-+.+++|+-.|..
T Consensus 252 llla~~~y~~G~ll~~~---i~ih~~a~mIi~~~i~K~~--~------lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~ 320 (414)
T PF03390_consen 252 LLLACSFYILGVLLSKL---IGIHAYAWMIILVAIVKAF--G------LVPESLEEGAKQWYKFFSKNLTWPLLVGIGVA 320 (414)
T ss_pred HHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHh--C------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444555555554 4999988887776665432 1 11111111011123567778899999999999
Q ss_pred -CChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhcc---ccHHHHHHHHhhcC
Q 001423 117 -MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA---TDPVAVVALLKELG 184 (1079)
Q Consensus 117 -ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSa---TDPvaVvaILkelg 184 (1079)
+||+++.+.+....++-+..+++...+++++...++. -+|...|+.-|-+.+. |.-++|.+.-++++
T Consensus 321 ~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g-~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 321 YTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVG-FYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred hCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 9999999988776666666666666666666666553 2466666666634433 66667777777766
No 68
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=79.94 E-value=12 Score=46.21 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=55.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHhcccc
Q 001423 641 DSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTS 719 (1079)
Q Consensus 641 ~~~v~~~v~~Es~~~~e~A~~~l~~l~~sfP~v~~~ikTk~aa~~iL~~~~~~i~~l~~~G~idekE~~~l~~~v~~~~ 719 (1079)
++++.+.+++|.+.+.++++...++-+++.. .+.-..++.-+.+|+.||+.+.++.++|.|||.-+.++.+.+||..
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~e 520 (525)
T TIGR00831 444 VEPVARELLPELDARIEELRADGEEKIRSGM--GEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLKE 520 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcccchhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHH
Confidence 4556777888888777776555433222211 1111234677889999999999999999999999999999998764
No 69
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.29 E-value=27 Score=40.40 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCCh
Q 001423 40 VGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEV 119 (1079)
Q Consensus 40 l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~ 119 (1079)
+.+++.++.+...+++++|+|..- ++..++.+.. ++. .+. . ..--|+.+.......+=...|.+++.
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~--llGpml~~a~-~~~---~~~--~-----~~~~P~~l~~~aqv~iG~~iG~~f~~ 223 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPW--LLGPMLVSAI-LNL---FGG--P-----SFSLPPWLVNAAQVLIGASIGSRFTR 223 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHH-HHH---HhC--C-----CCCCCHHHHHHHHHHHHHHHHccccH
Confidence 344455667777788889998532 2233332221 110 000 0 01226677777777787888999888
Q ss_pred HHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH
Q 001423 120 HQIKRCLVQMIL--LAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (1079)
Q Consensus 120 ~~lrr~~~~ill--LAv~gvlit~~lvg~~l~~l~p~~ls~~~ALL 163 (1079)
..+|+..+.... +.....+...++.++.++.+. ++++..+++
T Consensus 224 ~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~--~~~~~t~~L 267 (318)
T PF05145_consen 224 ETLRELRRLLPPALLSTLLLLALCALFAWLLSRLT--GIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 777654433322 222333344455566666655 788877766
No 70
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=78.16 E-value=38 Score=39.99 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc--ccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCH---HHHHHHHHHH
Q 001423 34 TDAVIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPA 108 (1079)
Q Consensus 34 ~~~lL~l~ilLllg~~~~~L~r--rl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~p---el~l~lfLp~ 108 (1079)
...+.++.+.+.+|.....+.+ .+.+|.-+.-+++|+++-...-. .+. ..+|. +.+..+.|-+
T Consensus 220 i~~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~----~~~--------~~id~~~i~~I~~~sL~~ 287 (368)
T PF03616_consen 220 IEHLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDK----TGK--------YKIDRKTIDRISGISLDL 287 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHH----hCc--------ccCCHHHHHHHHHHHHHH
Confidence 3344455555666666655554 57789988888999988765211 110 12333 4577777888
Q ss_pred HHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHH
Q 001423 109 LLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSL 162 (1079)
Q Consensus 109 LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~AL 162 (1079)
++..+=.++++..+.+...|++++-+.+++++.+..-++.+.++ |=+|-.+.
T Consensus 288 fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~--gkdydaav 339 (368)
T PF03616_consen 288 FLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVM--GKDYDAAV 339 (368)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--CCChhHHH
Confidence 88888889999999999999998877888877665555444444 33454333
No 71
>COG2985 Predicted permease [General function prediction only]
Probab=77.51 E-value=7.6 Score=46.67 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhcCCh---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHH
Q 001423 102 LAVFLPALLFESSFAMEV---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVA 178 (1079)
Q Consensus 102 l~lfLp~LLF~aGl~ld~---~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVva 178 (1079)
+++.|.+.+|..|++--. ..+|+.+++-..+|+.- +++....+++++.++..+.+.....+=||+-++..-+++.-
T Consensus 61 f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~ 139 (544)
T COG2985 61 FELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQD 139 (544)
T ss_pred hhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHH
Confidence 368888888988887654 45678888888888765 44455556666666533344567788889988888999999
Q ss_pred HHhhcCCCch
Q 001423 179 LLKELGASKK 188 (1079)
Q Consensus 179 ILkelgl~~r 188 (1079)
++++++.+..
T Consensus 140 ~L~~lg~~~~ 149 (544)
T COG2985 140 ILRELGAPSQ 149 (544)
T ss_pred HHHhhccchh
Confidence 9999997754
No 72
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=77.05 E-value=13 Score=43.50 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhc-CChHHHHHhh-hHHHHHHHH
Q 001423 58 RVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFA-MEVHQIKRCL-VQMILLAGP 135 (1079)
Q Consensus 58 ~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~-ld~~~lrr~~-~~illLAv~ 135 (1079)
++|+.+..+++|+++-.. |+ +.+.+..-...-.+++...+.+++++-.|+. +|++++-+.+ .+.+++.+.
T Consensus 203 ~Ih~~v~mII~~vi~k~~--gl------lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~ 274 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAF--GL------VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLS 274 (347)
T ss_pred cCCHHHHHHHHHHHHHHh--CC------CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHH
Confidence 789999999999988653 11 1111111011112356667788889888987 8999999988 555555444
Q ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhcc---ccHHHHHHHHhhcC
Q 001423 136 GVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA---TDPVAVVALLKELG 184 (1079)
Q Consensus 136 gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSa---TDPvaVvaILkelg 184 (1079)
+| +...+.++++..++. -+|...|+.-|.+.+. |.=++|.+.-++++
T Consensus 275 ~V-lg~ii~s~lvGKllG-~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 275 VV-VAMILGGAFLGKLMG-MYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred HH-HHHHHHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 44 334444544444443 2466777776644443 66677777777766
No 73
>PRK04972 putative transporter; Provisional
Probab=76.53 E-value=25 Score=43.90 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHc-----ccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCH---HHHHHHHHHHHH
Q 001423 39 FVGISLVLGIACRHLLR-----GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP---DLLLAVFLPALL 110 (1079)
Q Consensus 39 ~l~ilLllg~~~~~L~r-----rl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~p---el~l~lfLp~LL 110 (1079)
.+++.+++|.+.+.+.= .+++-..-+.+++|+++|.+. ..++.+ ..+++ ..+-.++|.+.+
T Consensus 385 ~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~--------~~~~~~---~~~p~~a~~~l~~~GL~lFl 453 (558)
T PRK04972 385 AFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLR--------ANHPTF---GYIPQGALNMVKEFGLMVFM 453 (558)
T ss_pred HHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhcc--------ccCCCc---eeeCHHHHHHHHHHhHHHHH
Confidence 34444445555444321 223334467788999998742 111111 11222 356678888888
Q ss_pred HHHhhcCCh---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHh-ccccHHHHHHHHhhcC
Q 001423 111 FESSFAMEV---HQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKELG 184 (1079)
Q Consensus 111 F~aGl~ld~---~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIl-SaTDPvaVvaILkelg 184 (1079)
...|++--. +.+++.+.+.+++++..++++.+++.++.++++ ++++. .++|++- +-|+|++..+..+..+
T Consensus 454 a~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~--k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 454 AGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL--RMNRA--LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 888876543 345666777777777777777766667776666 55554 5666654 4588888776665543
No 74
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=76.30 E-value=1.7e+02 Score=34.66 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHH
Q 001423 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMIS 140 (1079)
Q Consensus 100 l~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit 140 (1079)
-|++++++.|+--+=+.||.+.+-|.....+...+.|++..
T Consensus 111 nFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A 151 (438)
T COG3493 111 NFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGA 151 (438)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHH
Confidence 38899999999999999999998888777666655555543
No 75
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=76.07 E-value=98 Score=34.17 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhccccc--ccccccCcccccccccccCCHHHHHHHHHH-HHHHHH
Q 001423 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEY--GTSHQLGKIGDGIRLWASIDPDLLLAVFLP-ALLFES 113 (1079)
Q Consensus 37 lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~--g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp-~LLF~a 113 (1079)
++.+.+.++.=.+..++.+|+|-|..--+++.=+++..+.. +.+ .+. .....+++..+.=| ..-|..
T Consensus 8 ~f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~---------Y~~-Y~~g~~~i~~lLgPAtVAlAv 77 (230)
T COG1346 8 LFGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGIS---------YED-YMKGGQWINFLLGPATVALAV 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCC---------HHH-HhcccHHHHHHHHHHHHHHhh
Confidence 34444455555566778888886654432222122211111 111 000 12223333332222 122333
Q ss_pred hhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcC
Q 001423 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1079)
Q Consensus 114 Gl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelg 184 (1079)
-+-=.++.+||+|++++.-.+.|.+++......+++++ |++-....-+ +-=|.|.|.++ .+-+++|
T Consensus 78 PLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~---g~~~~~~~Sl-~PkSvTTpiAm-~vs~~iG 143 (230)
T COG1346 78 PLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF---GLSPELILSL-LPKSVTTPIAM-EVSESIG 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHh-cccccccHHHH-HHHHhcC
Confidence 33346899999999999888888888776655555554 4432211100 11244555554 4555554
No 76
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=73.69 E-value=1.5e+02 Score=32.86 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=26.3
Q ss_pred hcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1079)
Q Consensus 115 l~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l 151 (1079)
+--+++.+|+++++++.--+.|.+++.+....+++++
T Consensus 82 LY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~l 118 (232)
T PRK04288 82 LYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLI 118 (232)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999877777777666554444443
No 77
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=72.83 E-value=36 Score=41.22 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=15.4
Q ss_pred ccCCcHHHHHHHHHHHhccc
Q 001423 56 GTRVPYTVALLIIGIALGSL 75 (1079)
Q Consensus 56 rl~lP~~V~lil~GIlLGp~ 75 (1079)
|-|+|..+.+++.|++-|..
T Consensus 282 ~~R~~wL~v~~~~~~~t~~i 301 (449)
T TIGR00400 282 KNRIIWLLVLLVSSTFTATI 301 (449)
T ss_pred HhccchHHHHHHHHHHHHHH
Confidence 45788888888888887654
No 78
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=72.44 E-value=43 Score=38.80 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcC--ChHHHHHhhhHHHHHHHHHH
Q 001423 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAM--EVHQIKRCLVQMILLAGPGV 137 (1079)
Q Consensus 60 P~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~l--d~~~lrr~~~~illLAv~gv 137 (1079)
-..+.+++.|+++|... |- .+...+.+ +- .-++.-.|.++|.+.|+.- .++++|+..+..+..++..=
T Consensus 177 ~~sv~LLlGgliIG~~~-g~-~g~~~i~p-------f~-~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~P 246 (327)
T PF05982_consen 177 NKSVVLLLGGLIIGFLA-GP-EGVESIKP-------FF-VDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMP 246 (327)
T ss_pred CchHHHHHHHHHHhhee-Cc-cchhhccc-------hh-hccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHH
Confidence 45677888899998752 21 11111111 11 1134455777788888753 34556666666555555444
Q ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHH
Q 001423 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGES 197 (1079)
Q Consensus 138 lit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGES 197 (1079)
++..++ |..+.++. |++...+++++.+.++-+-.+|=+.+| ..+|+-=-.+-.+.|
T Consensus 247 li~a~i-g~~lg~~~--gls~Gg~~llavLaASASYIAvPAAmR-~AiPeAnpslyl~~S 302 (327)
T PF05982_consen 247 LINALI-GIGLGWLL--GLSPGGAVLLAVLAASASYIAVPAAMR-AAIPEANPSLYLTAS 302 (327)
T ss_pred HHHHHH-HHHHHHHh--CCCCccHHHHHHHHhhHhhhhhhHHHH-hhCcccCchHHHHHH
Confidence 444433 33333333 889899999999988888777777665 344543333333333
No 79
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=72.35 E-value=47 Score=35.10 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=20.7
Q ss_pred HhccccHHHHHHHHhhcCCCchHHHH
Q 001423 167 LLSATDPVAVVALLKELGASKKLNTI 192 (1079)
Q Consensus 167 IlSaTDPvaVvaILkelgl~~rL~~L 192 (1079)
....|+|.-....++++|+|.++..+
T Consensus 110 ~~~TT~~~~l~~~l~~l~~P~~~~~~ 135 (198)
T TIGR02454 110 LALTTPFPELLSALRRLGVPPLLVEI 135 (198)
T ss_pred HHHcCCHHHHHHHHHHcCCCHHHHHH
Confidence 35578999999999999999876543
No 80
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=71.24 E-value=69 Score=37.58 Aligned_cols=129 Identities=19% Similarity=0.118 Sum_probs=0.0
Q ss_pred hhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCH
Q 001423 19 EQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDP 98 (1079)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~p 98 (1079)
+.+++.....-.-++.+... +.+....+.+.+.+.+++|+|....+.-..+..+....+..+ ++. |
T Consensus 170 ~~a~~~~~~~i~~~~~~~~~-~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~--------~~l-----P 235 (352)
T COG3180 170 DGANGSGTPEIWLPPVDWLI-LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGIT--------IQL-----P 235 (352)
T ss_pred CCCCCCCCccccCchhhHHH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccccee--------eeC-----C
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQIK--RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLL 163 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~lr--r~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALL 163 (1079)
.++..+.-.++--..|.++|...++ +...+...+..++.++-.+..++.++++. +.+|.++++
T Consensus 236 ~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~--~i~~~ta~L 300 (352)
T COG3180 236 AWLLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLT--GIDLNTAYL 300 (352)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHH
No 81
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=68.22 E-value=58 Score=38.36 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhc-CChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhcc---ccHH
Q 001423 99 DLLLAVFLPALLFESSFA-MEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA---TDPV 174 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~-ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSa---TDPv 174 (1079)
++|..-+.=+|++..|+. +|++++-+......++-...+++++...+++..+++. -+|...|+.-|.+.+. |.-+
T Consensus 322 ~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~-~YPVEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 322 QFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMG-FYPVEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHhHHhcCCCCCCch
Confidence 456666688899999998 9999998877666666667788888888877777764 2577788888788765 7777
Q ss_pred HHHHHHhhcC
Q 001423 175 AVVALLKELG 184 (1079)
Q Consensus 175 aVvaILkelg 184 (1079)
+|.+--++++
T Consensus 401 aVLsAa~RM~ 410 (438)
T COG3493 401 AVLSAADRME 410 (438)
T ss_pred HHhhhcchhc
Confidence 7777777665
No 82
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=67.60 E-value=46 Score=34.53 Aligned_cols=111 Identities=18% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHH---HHhh-hHHHHHHHHH
Q 001423 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQI---KRCL-VQMILLAGPG 136 (1079)
Q Consensus 61 ~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~l---rr~~-~~illLAv~g 136 (1079)
...+.+++|+++|.+.. .+.+.-.+ ..--++.+-.++|.+.++..|++.-..-+ |+.. ...+.++.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~-----~~p~~~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGA-----TGPLTWYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ccHHHHHHHHHHHhccc-----cCCcceec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 36688899999997521 11111011 01124567778999999999998765443 4433 1233333333
Q ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHhHh-ccccHHHHHHHHhhc
Q 001423 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1079)
Q Consensus 137 vlit~~lvg~~l~~l~p~~ls~~~ALLLGAIl-SaTDPvaVvaILkel 183 (1079)
++++.+++.++.++++ ++++ ....|++- +-|++++..+..+..
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 95 TVVPTLLVAVALIKLL--RINY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHh--CCCH--HHHHHHHhccccChHHHHHHHHHh
Confidence 4444444555555555 5554 34455543 447777766665544
No 83
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=64.59 E-value=2.7e+02 Score=32.22 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=31.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchH
Q 001423 124 RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKL 189 (1079)
Q Consensus 124 r~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL 189 (1079)
+.+..++.+++. +++..++.++..+-.. +++..+|++=+ .|-....++.+-+|.|.+.+.
T Consensus 52 ~~~~~~~~~~~~-~~~~~~~~~~~l~r~~--~~d~~TA~~~~---~PGg~s~m~~la~~~gad~~~ 111 (318)
T PF05145_consen 52 SWWPPMLLLLVV-TLLLSLVGAWLLRRIS--GLDRATAFFAS---MPGGLSEMVALAEEYGADTRR 111 (318)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHc--CCChhHHHHHc---CCccHHHHHHHHHHcCCChhh
Confidence 334444333333 3333444455544443 67777776643 344555555666888776554
No 84
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=62.54 E-value=54 Score=40.98 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHhcccccccccccCcccccccccccCCHH---HHHHHHHHHHHHHHhhcCChH---HHHHhhhHHHHHH
Q 001423 60 PYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPD---LLLAVFLPALLFESSFAMEVH---QIKRCLVQMILLA 133 (1079)
Q Consensus 60 P~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pe---l~l~lfLp~LLF~aGl~ld~~---~lrr~~~~illLA 133 (1079)
-...+.+++|+++|.+.. .++.+ ..+++. .+-.++|.+.++..|++--.. .+++.+.+.+.++
T Consensus 416 g~~~g~l~~gl~~g~~~~--------~~~~~---~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRS--------KHPTF---GNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred hhhHHHHHHHHHHHHhcc--------cCCcc---eecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 345577888888887421 11110 113332 466788888888888876553 4566666777776
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHh-ccccHHHHHHHHhhc
Q 001423 134 GPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLKEL 183 (1079)
Q Consensus 134 v~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIl-SaTDPvaVvaILkel 183 (1079)
+.-++++.+++.++.++++ ++++. .++|++- +-|+|++..+..+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVL--KYDPA--LLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCHH--HHHHHhhccCCCcHHHHHHHHhc
Confidence 6666666666556665555 45543 4555543 457777776666544
No 85
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=62.51 E-value=13 Score=39.39 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred cccCCccchhhhhcC-CCccchhcccceeeeeccchHHHHHHHhcChhhHHHHHHH
Q 001423 732 FTHGSNLGLYEVLIG-KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 786 (1079)
Q Consensus 732 f~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~ 786 (1079)
+..|.-.|.+.++.+ .+|-+.+.|..-+.++.|+.+.+.+++++||++..++.+.
T Consensus 66 ~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 121 (211)
T PRK11753 66 LNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQ 121 (211)
T ss_pred cCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 344666777788775 3566665554445555666999999999999999877654
No 86
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=62.34 E-value=62 Score=41.99 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHH
Q 001423 100 LLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVV 177 (1079)
Q Consensus 100 l~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVv 177 (1079)
....+++|+-...+|++.|+..+.+ +...........+...+.+..... .. .+||..++.+|.+++.-.-+...
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~--k~p~~~~l~l~~lm~~kgl~el~ 383 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YC--KLPLRDSLALGLLMSTKGLVELI 383 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCchhHHHHHHHHHHhhhHHHHH
Confidence 3456889999999999999999998 333333322222222222222222 22 78999999999999886555443
No 87
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=62.24 E-value=14 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHh
Q 001423 689 HLIDYIQNLEKVGLLEEKEMLHLHDAV 715 (1079)
Q Consensus 689 ~~~~~i~~l~~~G~idekE~~~l~~~v 715 (1079)
.+.+-++++.+.|.|++.|+.+.++.+
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 355678999999999999999988764
No 88
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=62.12 E-value=1.3e+02 Score=33.61 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHHhhcccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001423 274 FTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 339 (1079)
Q Consensus 274 ~iAeE~lg~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl 339 (1079)
.++ +.++.+.+++-+++|+.++...-...++. +..+.++.+.-.++....|+.++.+.+
T Consensus 9 ~l~-~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~~~l 67 (273)
T TIGR00932 9 PLS-RRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDLERL 67 (273)
T ss_pred HHH-HHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 345 67899999999999999975322211111 234556667777788889999987654
No 89
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=60.79 E-value=3e+02 Score=35.91 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001423 233 SLGAVGMGLAFGIASVLWLG 252 (1079)
Q Consensus 233 ~lGgiliGlv~G~l~~~~l~ 252 (1079)
.+||..+|..+|.+...++.
T Consensus 191 ~~gG~~~Gaa~Gv~~Gli~~ 210 (764)
T TIGR02865 191 YIGGSGAGAAGGVVIGVILG 210 (764)
T ss_pred HhcCchHhHHHHHHHHHHHH
Confidence 34566667777766554443
No 90
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=60.09 E-value=1.7e+02 Score=33.64 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred cCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHH
Q 001423 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1079)
Q Consensus 57 l~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~g 136 (1079)
++-|..++ .++|+++...... ++.+....-+.+.....|.-+|..|..++.+.+++.++.+....+.=
T Consensus 180 ~~nP~iia-~i~Gl~~~~~~i~-----------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~k 247 (321)
T TIGR00946 180 IKFPPLWA-PLLSVILSLVGFK-----------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVR 247 (321)
T ss_pred HhCCChHH-HHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHH
Confidence 46676554 5667777654211 11112223456777889999999999999988887777776665555
Q ss_pred HHHHHHHH
Q 001423 137 VMISTFFL 144 (1079)
Q Consensus 137 vlit~~lv 144 (1079)
.++..+++
T Consensus 248 lil~P~i~ 255 (321)
T TIGR00946 248 FLVQPAVM 255 (321)
T ss_pred HHHHHHHH
Confidence 55554443
No 91
>PRK03818 putative transporter; Validated
Probab=59.75 E-value=91 Score=38.94 Aligned_cols=107 Identities=17% Similarity=0.096 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcccccccccccCcccccccccccCC-HHHHHHHHHHHHHHHHhhcCChHHHHH----hhhHHHHHHHHH
Q 001423 62 TVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASID-PDLLLAVFLPALLFESSFAMEVHQIKR----CLVQMILLAGPG 136 (1079)
Q Consensus 62 ~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~-pel~l~lfLp~LLF~aGl~ld~~~lrr----~~~~illLAv~g 136 (1079)
.-+-+++|+++|.+.. .++.... .+.. ...+-.++|.+.++..|++--..-+.. .+...+++++..
T Consensus 403 ~~G~L~~gl~~g~~~~--------~~~~~~~-~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v 473 (552)
T PRK03818 403 AGGPLIVALILGRIGS--------IGKLYWF-MPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLI 473 (552)
T ss_pred chHHHHHHHHHHhccC--------CCCceee-cCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHH
Confidence 4568889999987521 1111000 1111 235666889999998888766544433 344555555555
Q ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHhHh-ccccHHHHHHHHh
Q 001423 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVALLK 181 (1079)
Q Consensus 137 vlit~~lvg~~l~~l~p~~ls~~~ALLLGAIl-SaTDPvaVvaILk 181 (1079)
++++.++..++.++++ ++++. .++|++- +-|+|++..+..+
T Consensus 474 ~~~~~~~~~~~~~~~~--~~~~~--~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 474 TAVPLLIVGILARMLA--KMNYL--TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHHHHHHHHHH--cCCHH--HHHHHHhccCCCcHHHHHHhc
Confidence 5555555555545665 55544 4556553 4477777655544
No 92
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=58.92 E-value=88 Score=40.91 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=49.1
Q ss_pred cCCccchhhhhcCCCccchhcccceeeeeccchHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 001423 734 HGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 793 (1079)
Q Consensus 734 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~s~~~~~~ 793 (1079)
.|.--|-.+++.+.|+-+++.|.+.+.++.|+.+.++++|++||+....+-++-+..+.+
T Consensus 444 ~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~ 503 (823)
T PLN03192 444 CGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503 (823)
T ss_pred CCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 355567778899999999999988999999999999999999999888777665554433
No 93
>PRK09903 putative transporter YfdV; Provisional
Probab=58.33 E-value=3.3e+02 Score=31.16 Aligned_cols=139 Identities=7% Similarity=-0.032 Sum_probs=77.0
Q ss_pred cchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccchHHHHHHHHHHH
Q 001423 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFV 362 (1079)
Q Consensus 283 SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~~vl~~~~~~~~~~~~~~~llll~v~i 362 (1079)
++++-+.++|+++.-.+- .. .+.+.+..+.++..+.|+--+.+|+.+....+. .++.. ....++-
T Consensus 173 nP~iia~~~gl~~~l~~i-~l----P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---------~~~~~-~~~~~~K 237 (314)
T PRK09903 173 EPVVWAPVLATILVLVGV-KI----PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---------FSAEI-AYNTFLK 237 (314)
T ss_pred chHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccHHH-HHHHHHH
Confidence 445555556666543221 11 346777888899999999999999988643211 11211 1111112
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHhhhhHHHHHHHHHHhhhcccCCCcccccccccchHhhhhhhhhHHHhhh
Q 001423 363 QVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVN 442 (1079)
Q Consensus 363 lv~R~l~v~~l~p~L~~~g~~ls~re~~vl~wgGlRGaVsLaLAl~v~~~~~~~~~~~~~~~~l~vf~t~gVVllTLlV~ 442 (1079)
++.-++.+++.+.+ .+..-.++...++..+.+-+..+..+|-....+. -.+...|++|+++.
T Consensus 238 li~~P~i~~~~~~~---~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~---------------~~aa~~v~~sTlls 299 (314)
T PRK09903 238 LILMPLALLLVGMA---CHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYT---------------RTGTASLAVSVLGF 299 (314)
T ss_pred HHHHHHHHHHHHHH---cCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccH---------------HHHHHHHHHHHHHH
Confidence 22223333222212 2333345566666667778888888886532211 12455677888888
Q ss_pred hhhHHHHHHHcc
Q 001423 443 GSTTQYILHLLD 454 (1079)
Q Consensus 443 G~tl~~Llr~Lg 454 (1079)
-.|+|.++..+.
T Consensus 300 ~iTlpl~~~l~~ 311 (314)
T PRK09903 300 VVTAPLWIYVSR 311 (314)
T ss_pred HHHHHHHHHHHH
Confidence 888888776543
No 94
>PRK01658 holin-like protein; Validated
Probab=55.95 E-value=76 Score=31.69 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 103 AVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1079)
Q Consensus 103 ~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l 151 (1079)
.+|+|.- .|.=..++.+++++.+++...+++++++.+++|+...++
T Consensus 68 llFVPa~---VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l 113 (122)
T PRK01658 68 LFFIPSA---VGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLL 113 (122)
T ss_pred HHHHHhh---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445543 344445688999999999999999999888888777654
No 95
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=55.28 E-value=1.9e+02 Score=31.59 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHH-------HH
Q 001423 37 VIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLP-------AL 109 (1079)
Q Consensus 37 lL~l~ilLllg~~~~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp-------~L 109 (1079)
..+++++..++.+..+-+.+=|++....-+++|+++.... |...+ +. .++ -|..+|..+.|. +-
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg-G~--kGl-----aDi~lfsGiglmGGaMlRDfA 88 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG-GE--KGL-----ADIAIFGGFGLMGGAMLRDLA 88 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC-Cc--ccc-----chhhhhcchhhhhhHHHHHHH
Confidence 4445555555555544445668999999999999987641 21110 00 011 122233333321 23
Q ss_pred HHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001423 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALK 149 (1079)
Q Consensus 110 LF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~ 149 (1079)
+-..+++.|.++.||....-.+--+.|+++++++.+...+
T Consensus 89 IvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~ 128 (254)
T TIGR00808 89 IVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAW 128 (254)
T ss_pred HHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999998877776667788887665544444
No 96
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=53.05 E-value=3.5e+02 Score=29.76 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=25.0
Q ss_pred ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1079)
Q Consensus 118 d~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l 151 (1079)
+++.+|+++++++.--+.|.+++.+...++.+++
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~l 102 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998877778777766655555444
No 97
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=52.58 E-value=3.5e+02 Score=29.60 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 001423 145 GAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAI 205 (1079)
Q Consensus 145 g~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AI 205 (1079)
|+++.-++.........-++|.++|+|...+..+ ++.+-.++.....-+..++...+.+
T Consensus 10 gYia~r~~G~r~Gl~ltg~~GGlvSSTA~t~~la--~~~r~~p~~~~~~~~~i~lA~~~m~ 68 (211)
T PF13194_consen 10 GYIAVRLLGPRRGLLLTGLLGGLVSSTATTVSLA--RRSRENPELSRLLAAGILLASAVMF 68 (211)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHH--HHHhhCcchhHHHHHHHHHHHHHHH
Confidence 4444433322456788889999999987666554 3333344555556666666655444
No 98
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=51.16 E-value=8 Score=45.13 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=10.9
Q ss_pred HHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHH-HHHHHHHHHHHhhcCChHHH---HHhhh
Q 001423 52 HLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLL-AVFLPALLFESSFAMEVHQI---KRCLV 127 (1079)
Q Consensus 52 ~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l-~lfLp~LLF~aGl~ld~~~l---rr~~~ 127 (1079)
.+++.++.++.++-+++|++++..... + .+.+. -+-+. .++.|++....|.++|++.+ ...+.
T Consensus 227 ~~a~~~g~s~~l~af~~Gl~~~~~~~~--~---~~~~~--------l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~ 293 (380)
T PF00999_consen 227 GLAEILGLSGILGAFIAGLILSNSPFA--E---RLEEK--------LESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVII 293 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeeeeehcccccccc--c---hhhhc--------ccchhhHHHhhHHhhhhcccccccccccchhhhh
Confidence 344556788888888888888732110 0 01111 12233 77888888999999999888 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHH
Q 001423 128 QMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAV 176 (1079)
Q Consensus 128 ~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaV 176 (1079)
.++.+.+...+.-.+. ++...... +++|..++.+|....+-..+..
T Consensus 294 ~~~~~~~~~~~~k~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~l 339 (380)
T PF00999_consen 294 LVLLLLIAILLGKFIG-VYLASRLF--GIPWKEALFIGLGMLPRGEVSL 339 (380)
T ss_dssp --------------------------------HHHHTTTTSS--HHHHH
T ss_pred hHHHHHHHHHHhhhce-eehhhhhc--ccccchhHHHHHhhcCccHHHH
Confidence 4444433332222222 22222222 6789999999987775554443
No 99
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=50.71 E-value=1.1e+02 Score=31.31 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=31.0
Q ss_pred hhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001423 114 SFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1079)
Q Consensus 114 Gl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~ 152 (1079)
|.=..++.++.++.+++..-+++++++.+++|+...++.
T Consensus 79 Gim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 79 SVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999999888888888888887776553
No 100
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=50.66 E-value=4.7e+02 Score=30.58 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcH--------HHHHHHHhHhccccHHHHH
Q 001423 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW--------KTSLLLGGLLSATDPVAVV 177 (1079)
Q Consensus 106 Lp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~--------~~ALLLGAIlSaTDPvaVv 177 (1079)
+.+.+|-.|-++|++.-.+..++...+.+.=+++..+ +|++...+++ -.+ ...+...+.+..+|+..-.
T Consensus 53 ~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~-~~~~~~~~~g--~~~i~~gl~~G~s~la~~a~l~~~N~~ly~ 129 (326)
T PRK05274 53 LAVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAAL-VGVIAGKFIG--EEGIRLGGFAGLSTLAIIAAMDNTNGGLYA 129 (326)
T ss_pred HHHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHH-HHHHhhhcch--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 5567899999999998777666655554444444322 2333322222 111 2334444556666666666
Q ss_pred HHHhhcCCCch
Q 001423 178 ALLKELGASKK 188 (1079)
Q Consensus 178 aILkelgl~~r 188 (1079)
+++.+.+-+.+
T Consensus 130 ~~~~~~g~~~d 140 (326)
T PRK05274 130 ALMGQYGTKED 140 (326)
T ss_pred HHHHHhCCCCC
Confidence 66666554433
No 101
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=49.17 E-value=4.1e+02 Score=29.47 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=24.0
Q ss_pred cCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKL 150 (1079)
Q Consensus 116 ~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~ 150 (1079)
--+.+.+|+++.+++.-...|.+++.+....+.++
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~ 111 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALL 111 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999887677777665554444443
No 102
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=48.46 E-value=17 Score=39.97 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=73.5
Q ss_pred cCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHH
Q 001423 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPG 136 (1079)
Q Consensus 57 l~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~g 136 (1079)
.++|+..+.+++|.++=...+-... . ...+-......+.+-++.-..|++++.|.+++.......+++..
T Consensus 125 i~l~~aigel~a~fLiiNI~~~~~~--------~--~~~iv~s~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~ 194 (252)
T KOG3826|consen 125 IGLPTAIGELLAGFLIINISFVNGA--------V--CAPIVVSPLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLP 194 (252)
T ss_pred ccccchHHHHHHHHHheecchhhhc--------e--eeeeeehhhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhh
Confidence 3456688888888665443211000 0 01112223445667788899999999999999888888877666
Q ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHH
Q 001423 137 VMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVA 178 (1079)
Q Consensus 137 vlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVva 178 (1079)
-.+.+-.-+...+++. +.+|..++++|.++.+..+..+.+
T Consensus 195 ~~~~a~a~~~~S~~~l--~~~ii~~~l~g~v~~~i~~~~~r~ 234 (252)
T KOG3826|consen 195 SIIEASAPAVTSHFLL--AGPIIWAFLLGIVIGSILWRFPRP 234 (252)
T ss_pred hhhccccHHHHHHHHh--ccchHHHhccccceeeeecCCccc
Confidence 6665555455555554 789999999999998877665544
No 103
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=47.53 E-value=33 Score=37.18 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=45.5
Q ss_pred cCCccchhhhhcCCCccchhcccceeeeeccchHHHHHHHhcChhhHHHHHHHHHHHH
Q 001423 734 HGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL 791 (1079)
Q Consensus 734 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~s~~~~ 791 (1079)
.|.-.|....+.+.|+.+.++|-.-+.++.|+.+.++.++.+||.+..++.+.-...+
T Consensus 77 ~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~ 134 (236)
T PRK09392 77 PVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCY 134 (236)
T ss_pred CCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3555666678888899888777777777888899999999999999988876544433
No 104
>PRK11660 putative transporter; Provisional
Probab=47.00 E-value=6.8e+02 Score=31.37 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=44.0
Q ss_pred cCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccC-----------CCcHHHHHHHHhHhccccHHHHHHHHhhcC
Q 001423 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPY-----------DWSWKTSLLLGGLLSATDPVAVVALLKELG 184 (1079)
Q Consensus 116 ~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~-----------~ls~~~ALLLGAIlSaTDPvaVvaILkelg 184 (1079)
..|+..+......++.+++++.+-+.+..-.+. ..... |..=..+-++|+.-+++...- .++-.+.|
T Consensus 272 ~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~-~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~sr-Sa~n~~aG 349 (568)
T PRK11660 272 TLSWDLIRALLPAAFSMAMLGAIESLLCAVVLD-GMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIAR-SAANVRAG 349 (568)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHH-HHHHHhcC
Confidence 467888888888888888877665543222221 11111 111233444555444443222 24556778
Q ss_pred CCchHHHHHHHH
Q 001423 185 ASKKLNTIIEGE 196 (1079)
Q Consensus 185 l~~rL~~LIeGE 196 (1079)
..+++..++.|-
T Consensus 350 arT~la~iv~a~ 361 (568)
T PRK11660 350 ATSPISAVIHAL 361 (568)
T ss_pred CCcHHHHHHHHH
Confidence 888888877654
No 105
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.28 E-value=8.3e+02 Score=32.17 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=24.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001423 186 SKKLNTIIEGESLMNDGTAIVVYQLFFQMVL 216 (1079)
Q Consensus 186 ~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~ 216 (1079)
-..+......+...++..|+.+|-+-+-+..
T Consensus 540 f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k 570 (798)
T KOG3599|consen 540 FIDFTEVAQWNIAARNLLAFLVFLTTIKLWK 570 (798)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999988887776654
No 106
>PRK01821 hypothetical protein; Provisional
Probab=46.18 E-value=1.3e+02 Score=30.51 Aligned_cols=46 Identities=7% Similarity=0.115 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 103 AVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151 (1079)
Q Consensus 103 ~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l 151 (1079)
.+|+|.- .|.=..+..++.++.+++..-+++++++.+++|+...++
T Consensus 73 LfFVPa~---VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l 118 (133)
T PRK01821 73 LLFVPIG---VGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYV 118 (133)
T ss_pred HHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445543 244445678999999999888888888888888776655
No 107
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=44.81 E-value=5.6e+02 Score=29.82 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=37.1
Q ss_pred cchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 001423 283 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 336 (1079)
Q Consensus 283 SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I~~ 336 (1079)
++.+-+.++|++++...... +-.....+....+.++....++..+.+|..+..
T Consensus 244 nP~~~a~~lgli~~~~~~~~-~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~ 296 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLR-PLFFPSFITDSLSYLGAAAVPLALFVLGASLAR 296 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66677777788776532211 001116778888999999999999999998864
No 108
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=44.41 E-value=6.6e+02 Score=30.49 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 001423 234 LGAVGMGLAFGIAS 247 (1079)
Q Consensus 234 lGgiliGlv~G~l~ 247 (1079)
..|++.|+++|.+.
T Consensus 360 ~v~~~~g~~~g~~~ 373 (449)
T TIGR00400 360 CVSILVGAILASVN 373 (449)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344555555443
No 109
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=40.58 E-value=1.3e+02 Score=30.33 Aligned_cols=35 Identities=6% Similarity=0.075 Sum_probs=28.9
Q ss_pred ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001423 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTF 152 (1079)
Q Consensus 118 d~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~ 152 (1079)
..+.+..++.+++...+.++++...++|+...++.
T Consensus 81 y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 81 YFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999988999988888888776653
No 110
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=39.74 E-value=1e+02 Score=26.00 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 001423 538 LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLA 573 (1079)
Q Consensus 538 l~~~r~~~~~l~~~g~Is~~~~~~Ll~~vd~~lD~~ 573 (1079)
-.+..+++.++..+|.|+++.+...+..-|+.+...
T Consensus 12 G~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~~ 47 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQLAMKVLEQFDKSINEA 47 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999887643
No 111
>COG3329 Predicted permease [General function prediction only]
Probab=39.45 E-value=6.7e+02 Score=29.15 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Q 001423 193 IEGESLMNDGTAIVVYQLFFQMVLGK 218 (1079)
Q Consensus 193 IeGESLlNDa~AIVLf~l~l~~~~~~ 218 (1079)
+.-||++|-+....+-.+++++..|+
T Consensus 210 ll~Esflnpal~lllggl~iGlitGe 235 (372)
T COG3329 210 LLQESFLNPALVLLLGGLAIGLITGE 235 (372)
T ss_pred HHHHHHcCchHHHHHHHHHHhheecc
Confidence 44567777777666666666666544
No 112
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=37.59 E-value=8.5e+02 Score=29.83 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=25.0
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 178 ALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211 (1079)
Q Consensus 178 aILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~ 211 (1079)
..+|+++-.+.+...+.+--+.||++.-+.-...
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~ 305 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAG 305 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666567888899999999999876654433
No 113
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=36.98 E-value=1.6e+02 Score=25.80 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Q 001423 529 NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASN 575 (1079)
Q Consensus 529 ~~~e~r~rll~~~r~~~~~l~~~g~Is~~~~~~Ll~~vd~~lD~~~~ 575 (1079)
.+.++...++...++.+.+..+.|.|+++-+..+...+|.+.+....
T Consensus 8 el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~q 54 (59)
T PF10925_consen 8 ELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQ 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35566667788888899999999999999999999999998876543
No 114
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=36.85 E-value=90 Score=36.39 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 001423 105 FLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1079)
Q Consensus 105 fLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~l 143 (1079)
.+|+..|--|..+++..+-+...+.+++++..++++..+
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~ 242 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIP 242 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchh
Confidence 688889999999999999999888888877766665443
No 115
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=36.65 E-value=7.4e+02 Score=28.84 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 173 PVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGA-IIKFLAQVSLGAVGMGLAFGIASVLWL 251 (1079)
Q Consensus 173 PvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~-i~~fl~~v~lGgiliGlv~G~l~~~~l 251 (1079)
..+..-+.-.+|+|-..++-+.|.-+ -+.+... .....+|.. +...+. ..+...++|.+++++..+.+
T Consensus 76 a~iw~~i~t~~glPvStThalvGal~--------G~~l~~~--g~~~v~w~~~~~~I~~-~wv~sPlia~~~a~~l~~~~ 144 (326)
T PF01384_consen 76 AAIWLLIATWLGLPVSTTHALVGALI--------GAGLASG--GFSAVNWSKGLLKIVL-SWVISPLIAFILAYILYRLI 144 (326)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHH--------HHHHHHh--hhhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445555677888877776666421 1111111 113455553 333332 23344556666776665555
Q ss_pred HHHh
Q 001423 252 GFIF 255 (1079)
Q Consensus 252 ~~~~ 255 (1079)
++..
T Consensus 145 ~~~~ 148 (326)
T PF01384_consen 145 RRIF 148 (326)
T ss_pred HHHH
Confidence 5543
No 116
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=36.16 E-value=9e+02 Score=30.49 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001423 233 SLGAVGMGLAFGIASVLWLGF 253 (1079)
Q Consensus 233 ~lGgiliGlv~G~l~~~~l~~ 253 (1079)
++|+++.|++.|++..++-++
T Consensus 316 FlG~Ilag~lagyv~~~l~K~ 336 (563)
T PRK10712 316 FIGGIIAGFLAGYVAKLISTK 336 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 578888899999887544444
No 117
>PRK09903 putative transporter YfdV; Provisional
Probab=35.93 E-value=4.8e+02 Score=29.88 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHh
Q 001423 99 DLLLAVFLPALLFESSFAMEVHQIKRC 125 (1079)
Q Consensus 99 el~l~lfLp~LLF~aGl~ld~~~lrr~ 125 (1079)
+.+.....|.-||..|..+..+.++..
T Consensus 201 ~~lg~~~~PlaL~~iG~~L~~~~~~~~ 227 (314)
T PRK09903 201 NLIAKANSGVAVFAAGLTLAAHKFEFS 227 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 456677799999999998876665443
No 118
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=35.54 E-value=4.7e+02 Score=30.35 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 001423 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1079)
Q Consensus 104 lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~l 143 (1079)
+.+|++-|.-|-.+|++.+.+-+-+-++|++..++++...
T Consensus 201 ~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 4478899999999999999999888888887766665443
No 119
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=35.45 E-value=3.3e+02 Score=31.56 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 001423 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFF 143 (1079)
Q Consensus 104 lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~l 143 (1079)
+.+|++-|.-|-.+|++.+.+.+.+-++|++..++++...
T Consensus 201 ~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 201 ILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 4588999999999999999999999999988777665443
No 120
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=35.18 E-value=2.6e+02 Score=29.43 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHh
Q 001423 239 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 294 (1079)
Q Consensus 239 iGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~lg~SGVLAvvvaGLv 294 (1079)
+|++.+++..+.-++..+....+.+-.++.+++++... ........-.+++++++
T Consensus 134 ~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~-~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 134 LGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLA-RLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhCCCcCHHHHHHHHHh
Confidence 44555544333223322333344444555555555444 32223344444555544
No 121
>PHA01351 putative minor structural protein
Probab=35.17 E-value=3.2e+02 Score=34.72 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHhc
Q 001423 671 PQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQ 716 (1079)
Q Consensus 671 P~v~~~ikTk~aa~~iL~~~~~~i~~l~~~G~idekE~~~l~~~v~ 716 (1079)
|.++.++-+..-+..++..|-++++.|.++|++|-+|++...+++-
T Consensus 561 ~alIqaiI~EyftepL~KlQLnvyEsLakKGY~d~qq~ksElk~LG 606 (1070)
T PHA01351 561 SAIISALIYENQVEQLIKFQLNNIESLAKKGYLSLDEIKKQFKAIG 606 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhc
Confidence 4456667777777788888999999999999999999998877755
No 122
>COG2985 Predicted permease [General function prediction only]
Probab=34.93 E-value=1.9e+02 Score=35.47 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcccccccccccCcccccccccccCCHH---HHHHHHHHHHHHHHhhcCCh-----HHHHHhhhHHHHH
Q 001423 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPD---LLLAVFLPALLFESSFAMEV-----HQIKRCLVQMILL 132 (1079)
Q Consensus 61 ~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pe---l~l~lfLp~LLF~aGl~ld~-----~~lrr~~~~illL 132 (1079)
..-+.+++|+++|.+ +.+++-. ..+++. .+-++++.+ |.+|..++- ..+-.....++..
T Consensus 397 ~aGGpLivaLiLG~i--------g~iGpl~---w~mP~~An~~lrelGl~l--FLA~VGl~aG~~f~~tL~~~Gl~~ig~ 463 (544)
T COG2985 397 NAGGPLIVALILGFI--------GAIGPLT---WFMPPGALLALRELGLAL--FLAGVGLSAGSGFVNTLTGSGLQIIGY 463 (544)
T ss_pred ccccHHHHHHHHHHh--------cccCceE---EEcChhHHHHHHHHHHHH--HHHhhccccccchHhhhcccchhhhhH
Confidence 344567777777764 1222221 123332 234445444 444444332 1222445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHh-ccccHHHHHHH
Q 001423 133 AGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLL-SATDPVAVVAL 179 (1079)
Q Consensus 133 Av~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIl-SaTDPvaVvaI 179 (1079)
+.+-.+++.+.++.+.++++ .++| ..+.|++. +-|||.+....
T Consensus 464 g~lit~vp~i~~~llg~~v~--kmn~--~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 464 GALVTLVPVIIVFLLGRYVL--KMNW--LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hccH--HHHhhHHhcCCCChHHHHHH
Confidence 66667777777777777776 3455 34555554 55999887543
No 123
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=34.85 E-value=9e+02 Score=29.30 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=42.5
Q ss_pred ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HccCCCcHHHHHHHHhHhcccc-HHHHHHHHhhcCCCchHHH-HHH
Q 001423 118 EVHQIKRCLVQMILLAGPGVMISTFFLGAALKL-TFPYDWSWKTSLLLGGLLSATD-PVAVVALLKELGASKKLNT-IIE 194 (1079)
Q Consensus 118 d~~~lrr~~~~illLAv~gvlit~~lvg~~l~~-l~p~~ls~~~ALLLGAIlSaTD-PvaVvaILkelgl~~rL~~-LIe 194 (1079)
|.+.+.|.++..+.+-.....++.+ +|+.+.. +-| |.+.... ....-+... +......+.++ .|+.+-. +.+
T Consensus 67 ~~k~~gr~g~ktl~yf~~tt~~A~~-iGl~~~~~~~P-g~g~~~~--~~~~~~~~~~~~~~~~~l~~i-iP~ni~~a~a~ 141 (415)
T COG1301 67 DLKKLGRLGGKTLIYFLVTTTLAIA-IGLVVANVLQP-GAGINID--PATLDTGAESEVSILDFLLDI-IPTNIFGALAE 141 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC-CCCCCcC--ccccCCcccccchHHHHHHhh-cCCChHhHhcC
Confidence 4667777777777665554444333 3444333 334 3211000 000000000 11133444433 5655544 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 001423 195 GESLMNDGTAIVVYQLFFQMVL 216 (1079)
Q Consensus 195 GESLlNDa~AIVLf~l~l~~~~ 216 (1079)
||...+++|.++++...
T Consensus 142 -----g~vLqil~fail~G~al 158 (415)
T COG1301 142 -----GNVLQILFFAILFGLAL 158 (415)
T ss_pred -----CChHHHHHHHHHHHHHH
Confidence 38999999999988764
No 124
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=33.47 E-value=79 Score=32.79 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCccchhhhhcCCCc--c--chhcccceeeeeccchHHHHHHHhcChhhHHHHHHHHHHHH
Q 001423 735 GSNLGLYEVLIGKPY--M--SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL 791 (1079)
Q Consensus 735 g~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~s~~~~ 791 (1079)
|.-.|.-.++.+.++ . +.+++|+.+ +.||.+.++.++.+||++..++.+.-.-.+
T Consensus 42 g~~~G~~~~~~~~~~~~~~~~~A~~~~~v--~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l 100 (193)
T TIGR03697 42 NSVFGVLSLITGHRSDRFYHAVAFTRVEL--LAVPIEQVEKAIEEDPDLSMLLLQGLSSRI 100 (193)
T ss_pred CCEeeeeeeccCCCCccceEEEEecceEE--EEeeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 444455556666542 3 556666554 555699999999999999999887654433
No 125
>PHA01351 putative minor structural protein
Probab=33.32 E-value=1e+03 Score=30.55 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhhhCCchhHHHHHHHHHHH--HHHHHHHHHHH-hhhhh---HH----HHHHHHHHHHH------
Q 001423 621 CAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVE--GEDARKFLEDV-RVNFP---QV----LHVVKTRQVTY------ 684 (1079)
Q Consensus 621 ~~a~l~a~~~~~~~L~~f~~~~~v~~~v~~Es~~~--~e~A~~~l~~l-~~sfP---~v----~~~ikTk~aa~------ 684 (1079)
.+.|+...+.++++|...=-++++...++.|...+ .+.--+++|.+ +.=|= |. -+...+|-+..
T Consensus 540 L~nF~IS~QD~EkELKkLg~s~alIqaiI~EyftepL~KlQLnvyEsLakKGY~d~qq~ksElk~LGidKe~i~klin~Y 619 (1070)
T PHA01351 540 LNNFLISPQDLEKDLKHLGFDSAIISALIYENQVEQLIKFQLNNIESLAKKGYLSLDEIKKQFKAIGIIKEYEDAFINFY 619 (1070)
T ss_pred HHhccCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhccchhHHHHHHHHH
Confidence 35566777777777777655666666666665332 22222333332 11111 11 11112222222
Q ss_pred ---HHHHHHHHHHHHHHHcCccCHHHHHHHHHHhc-------------ccccccccccccCC
Q 001423 685 ---SVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQ-------------WTSKSIRNKHSLHP 730 (1079)
Q Consensus 685 ---~iL~~~~~~i~~l~~~G~idekE~~~l~~~v~-------------~~~~~~~~~~~~~p 730 (1079)
--++.+.+|||++.+.=.||+||+..-.++.+ +..|.+.+.|+.-.
T Consensus 620 ~ql~qt~~eIkYIqe~LK~f~IspkeAitELKKL~ISdaLAn~IV~eYf~iP~l~~q~TViE 681 (1070)
T PHA01351 620 NQELQISAFLTILKSQLRQFQIDPKEAETELKKLNINEYLANQIIQEEYNINIAKLQLSVLE 681 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHcCchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 22345688999999999999999999888866 45666666665443
No 126
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=32.67 E-value=1.1e+03 Score=29.55 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=44.5
Q ss_pred cCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------cHHHHHHHHhHhccccHHHHHHHHhhcC
Q 001423 116 AMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDW-----------SWKTSLLLGGLLSATDPVAVVALLKELG 184 (1079)
Q Consensus 116 ~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~l-----------s~~~ALLLGAIlSaTDPvaVvaILkelg 184 (1079)
..|+..+...+..++.+++++.+-+..+.-.+.. ...+.. .=..+-++|+.-++....- .++-.+.|
T Consensus 252 ~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~-~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~sr-s~~~~~~G 329 (563)
T TIGR00815 252 TLDWELLPTLAPDAIAIAIVGLIESIAIARSFAR-MTGYKIDANQELVAQGIANIVGSFFSCYPATGSLSR-TAVNAKAG 329 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcchH-HHHHHhcC
Confidence 4567777888888888888876665443322221 111111 1133455555544434333 34556678
Q ss_pred CCchHHHHHHHH
Q 001423 185 ASKKLNTIIEGE 196 (1079)
Q Consensus 185 l~~rL~~LIeGE 196 (1079)
..+++..++.+-
T Consensus 330 ~~t~~a~i~~~~ 341 (563)
T TIGR00815 330 CRTQLSGVVTAI 341 (563)
T ss_pred CcchHHHHHHHH
Confidence 888988876654
No 127
>COG3329 Predicted permease [General function prediction only]
Probab=32.10 E-value=82 Score=36.13 Aligned_cols=136 Identities=23% Similarity=0.284 Sum_probs=68.7
Q ss_pred HHHHcccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHH
Q 001423 51 RHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMI 130 (1079)
Q Consensus 51 ~~L~rrl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~il 130 (1079)
.++.+-.-+-..+.+++.|+++|.+. |.. +... ..++ .+-++.-.|.+++.+.|++- +++++...+...
T Consensus 208 ~ell~Esflnpal~lllggl~iGlit-Ge~------g~~v--l~~F-~~~lFqGvL~lflL~MGm~A-~rrl~elrk~g~ 276 (372)
T COG3329 208 WELLQESFLNPALVLLLGGLAIGLIT-GEQ------GESV--LKPF-FDPLFQGVLCLFLLDMGMTA-GRRLKELRKVGQ 276 (372)
T ss_pred HHHHHHHHcCchHHHHHHHHHHhhee-ccC------chhh--hhhh-hHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCc
Confidence 34444444555667788899999752 211 1110 0011 11234445777788888864 456665555555
Q ss_pred HHHHHHHHHHHHHH--HHHHHHH--ccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHH
Q 001423 131 LLAGPGVMISTFFL--GAALKLT--FPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESL 198 (1079)
Q Consensus 131 lLAv~gvlit~~lv--g~~l~~l--~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESL 198 (1079)
.+-+.|++.+.+.. |+.+.++ .+.|++.....+++.+-++.+-.++-+.+| +++|+-=-++=.|.|+
T Consensus 277 ~~v~fgllaPil~g~ig~~lg~~a~y~tgfs~g~~vllAVlaaSaSyIa~PaalR-~~iPeAnPs~yl~~Sl 347 (372)
T COG3329 277 GLVLFGLLAPILHGFIGLLLGMIAGYPTGFSDGGVVLLAVLAASASYIAVPAALR-LAIPEANPSLYLGASL 347 (372)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHHhcchhhccccHHHh-ccCCCCCCcceeehhh
Confidence 45455555443222 2222222 223444545667776666666555555554 5666554444444443
No 128
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=31.98 E-value=1.4e+02 Score=34.35 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcc-CC-----CcHHHHHHHHhHhccccHHHHHHH
Q 001423 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YD-----WSWKTSLLLGGLLSATDPVAVVAL 179 (1079)
Q Consensus 106 Lp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p-~~-----ls~~~ALLLGAIlSaTDPvaVvaI 179 (1079)
+...+|-.|-++|++.-.+..++-..+-..=+++..+ +|+.+..+++ .| +-=...+.+=+.++.|....-.++
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~-~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWV-VAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHH-HHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 5567899999999998777666665554444555433 3444444443 22 112345666677788888888899
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Q 001423 180 LKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAI 225 (1079)
Q Consensus 180 Lkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~~~~s~~~i 225 (1079)
..+.|-+++.+-. +-.-+||+=-+. .++++...-.++.+...
T Consensus 130 ~~qyGd~~D~gA~--~i~sl~~GPf~T--Mi~LG~sGlA~ip~~~l 171 (314)
T TIGR00793 130 MQQYGTKEEAGAF--VLMSLESGPLMT--MVILGTAGIASFEPHVF 171 (314)
T ss_pred HHHcCCHhhhhhh--hhhhhccCcHHH--HHHHhhccCCCCCHHHH
Confidence 9999876655433 233466653222 22333333334555544
No 129
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=31.97 E-value=6.6e+02 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHcc
Q 001423 188 KLNTIIEGESLMNDGTAIVVY-QLFFQMVLG 217 (1079)
Q Consensus 188 rL~~LIeGESLlNDa~AIVLf-~l~l~~~~~ 217 (1079)
++.-++---+.+-|+.+.+.+ .++.+..+|
T Consensus 2 ~l~~lLtf~aG~iDa~~fl~~~~~F~s~~TG 32 (209)
T PF06912_consen 2 RLALLLTFIAGFIDAYSFLALGGVFVSFMTG 32 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHhHH
Confidence 455677788899999999988 677766543
No 130
>COG0679 Predicted permeases [General function prediction only]
Probab=31.78 E-value=6.1e+02 Score=29.14 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=47.4
Q ss_pred cCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHH-
Q 001423 57 TRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGP- 135 (1079)
Q Consensus 57 l~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~- 135 (1079)
++-|..+. .++|+++...... ++.+....-+.+.....|..++..|..++.+..++...++...+..
T Consensus 166 ~~nP~i~a-~i~g~~~~~~~i~-----------lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~ 233 (311)
T COG0679 166 LTNPLIIA-LILGLLLNLLGIS-----------LPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSL 233 (311)
T ss_pred HhCcHHHH-HHHHHHHHHcCCC-----------CcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHH
Confidence 44565544 5667776643211 1111112235677788999999999999997777777777666555
Q ss_pred HHHHHHHHHHH
Q 001423 136 GVMISTFFLGA 146 (1079)
Q Consensus 136 gvlit~~lvg~ 146 (1079)
-.++..+++..
T Consensus 234 kll~~Pl~~~~ 244 (311)
T COG0679 234 KLLLAPLVALL 244 (311)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 131
>PF09317 DUF1974: Domain of unknown function (DUF1974); InterPro: IPR015396 This C-terminal domain is functionally uncharacterised and is predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases. ; GO: 0003995 acyl-CoA dehydrogenase activity, 0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase, 0055114 oxidation-reduction process
Probab=31.47 E-value=2.3e+02 Score=32.44 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHhcc
Q 001423 673 VLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQW 717 (1079)
Q Consensus 673 v~~~ikTk~aa~~iL~~~~~~i~~l~~~G~idekE~~~l~~~v~~ 717 (1079)
+-+++|+.+.... +..+.+++-.++|+|++.|++.|+++-+.
T Consensus 233 l~~A~k~g~l~~~---~~~~~~~~A~~~gvIt~~Ea~~l~~a~~~ 274 (284)
T PF09317_consen 233 LRKAIKKGQLPKQ---SLEEQIDEALEKGVITAEEAELLREAEEL 274 (284)
T ss_pred HHHHHhcCCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4444444333333 45678899999999999999999987553
No 132
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=31.46 E-value=88 Score=33.83 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCccchhhhhcCCCccchhcccceeeeeccchHHHHHHHhcChhhHHHHHH
Q 001423 735 GSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQ 785 (1079)
Q Consensus 735 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~ 785 (1079)
|.-.|..+++.+.+|.+++.|..-+.++.|+.+.++.++..||.+-.++-+
T Consensus 80 g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~ 130 (226)
T PRK10402 80 PCFIGEIELIDKDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCK 130 (226)
T ss_pred CCeEEeehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHH
Confidence 455566677888899888777777778888899999999999998776433
No 133
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.88 E-value=9.9e+02 Score=33.20 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=7.9
Q ss_pred cccchHHHHHHHHh
Q 001423 281 DVSGVLTVMTLGMF 294 (1079)
Q Consensus 281 g~SGVLAvvvaGLv 294 (1079)
+.-|++|.++++++
T Consensus 141 ~gGGIIG~lLs~lL 154 (1355)
T PRK10263 141 ASGGVIGSLLSTTL 154 (1355)
T ss_pred cccchHHHHHHHHH
Confidence 34566666655544
No 134
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=29.55 E-value=7e+02 Score=29.96 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHc--ccCCcHHHHHHHHHHHhcccccccccccCcccccccccccCCHHHHHHHHHHHHHHHHh
Q 001423 37 VIFVGISLVLGIACRHLLR--GTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESS 114 (1079)
Q Consensus 37 lL~l~ilLllg~~~~~L~r--rl~lP~~V~lil~GIlLGp~~~g~~~~Lg~l~~~i~~~~~i~pel~l~lfLp~LLF~aG 114 (1079)
+..+++.+.+|.....+.+ .+.+|.-++.+++|+++-...-- ++. +.+ ..-.-+.+..+.|-.++=.+=
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~----~~~--~~v---~~~~v~~ig~vsL~lflamAL 294 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDL----LKK--YRV---FRRAVDVIGNVSLSLFLAMAL 294 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHH----hcc--ccc---cHHHHHHHhhhHHHHHHHHHH
Confidence 3345555566666666655 46789999999999998764211 110 000 111123455555555555555
Q ss_pred hcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHH----hHh--ccccHHHHHHHHhhcCCCch
Q 001423 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLG----GLL--SATDPVAVVALLKELGASKK 188 (1079)
Q Consensus 115 l~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLG----AIl--SaTDPvaVvaILkelgl~~r 188 (1079)
.++.+-++-+.+.+.+++-.+++++..+..-+..+-++ |=++-.+.+.+ --+ +||.-+-..++-++.|.+.+
T Consensus 295 mSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m--G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~k 372 (404)
T COG0786 295 MSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLM--GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHK 372 (404)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh--CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCce
Confidence 56666677777777776666666554443333333333 44554444421 122 33333333344455553222
Q ss_pred H--HHHHHHHHHHHHHHHH
Q 001423 189 L--NTIIEGESLMNDGTAI 205 (1079)
Q Consensus 189 L--~~LIeGESLlNDa~AI 205 (1079)
- -.=+.| +.+-|.+..
T Consensus 373 Af~ivPiVG-Affid~ina 390 (404)
T COG0786 373 AFIVVPIVG-AFFIDIINA 390 (404)
T ss_pred eeEEeehHH-HHHHHHHHH
Confidence 1 111334 666666543
No 135
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=28.82 E-value=92 Score=27.20 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHcCccCHHHHHHHHHHhc
Q 001423 684 YSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQ 716 (1079)
Q Consensus 684 ~~iL~~~~~~i~~l~~~G~idekE~~~l~~~v~ 716 (1079)
..+++..++.|.++.+.|.|+..++..+++.++
T Consensus 14 ~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id 46 (59)
T PF10925_consen 14 KQMLELKKQIIDKYVEAGVITQEQADAIKKHID 46 (59)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356788899999999999999999999998877
No 136
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.76 E-value=4.9e+02 Score=35.90 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=14.5
Q ss_pred HhhcccchHHHHHHHHhhh
Q 001423 278 EGADVSGVLTVMTLGMFYA 296 (1079)
Q Consensus 278 E~lg~SGVLAvvvaGLvls 296 (1079)
+.-+..|.+|++++++++.
T Consensus 59 ~V~Nl~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 59 PIHNLGGMPGAWLADTLFF 77 (1355)
T ss_pred ccccccchHHHHHHHHHHH
Confidence 4567788888888887764
No 137
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=28.72 E-value=1e+03 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 001423 191 TIIEGESLMNDGTAIVVYQLFFQMVLGK 218 (1079)
Q Consensus 191 ~LIeGESLlNDa~AIVLf~l~l~~~~~~ 218 (1079)
.-+.-|++.|-.+-+.+-.+++++..++
T Consensus 168 ~~~l~E~l~~~sv~LLlGgliIG~~~g~ 195 (327)
T PF05982_consen 168 GELLHESLTNKSVVLLLGGLIIGFLAGP 195 (327)
T ss_pred HHHHHHHHcCchHHHHHHHHHHhheeCc
Confidence 3344577777777666666666666543
No 138
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=27.73 E-value=1e+03 Score=27.60 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 001423 195 GESLMNDGTAIVVYQLFFQMVL 216 (1079)
Q Consensus 195 GESLlNDa~AIVLf~l~l~~~~ 216 (1079)
+.=+++|++++.+--++..+..
T Consensus 54 a~Hml~D~~al~lal~A~~~a~ 75 (296)
T COG1230 54 ALHMLSDALALLLALIAIKLAR 75 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4557889988887777776664
No 139
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=26.86 E-value=9.4e+02 Score=28.49 Aligned_cols=99 Identities=19% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcH-------HHHHHH--HhH-hccccHHH
Q 001423 106 LPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSW-------KTSLLL--GGL-LSATDPVA 175 (1079)
Q Consensus 106 Lp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~-------~~ALLL--GAI-lSaTDPva 175 (1079)
+..++.....+.++..+....+-++...+...+...++.....++.. +.+. ..++++ +.- -++|=|+.
T Consensus 188 v~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~--~~np~~~~~~~~~~~l~Af~T~SS~atlP~~ 265 (390)
T PF00375_consen 188 VFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLT--RKNPFKFLKAMLPALLTAFSTSSSAATLPVT 265 (390)
T ss_dssp HHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TT--T--HHHHHHHTHHHHHHHHHHT-TTTSHHHH
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc--CCCHHHHHHHHHHHHHHHhhccCCCCCchhH
Confidence 34445555566778888866554444333322222222222222121 2221 122222 222 23344555
Q ss_pred HHHHHhhcCCCchHHHHH--HHHHHHHHHHHHH
Q 001423 176 VVALLKELGASKKLNTII--EGESLMNDGTAIV 206 (1079)
Q Consensus 176 VvaILkelgl~~rL~~LI--eGESLlNDa~AIV 206 (1079)
.-..-+++|.++++.+.+ .|-++=.|++++.
T Consensus 266 ~~~~~~~~gv~~~i~~fv~Plg~t~n~~G~a~~ 298 (390)
T PF00375_consen 266 IECLEENLGVSRSIASFVLPLGATINMDGTALY 298 (390)
T ss_dssp HHHHHT-TT--HHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHHHhcCCCcccceeeechhccccCCccchH
Confidence 555555589999998887 5777777777653
No 140
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=25.83 E-value=8.3e+02 Score=30.62 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCccCHHHHHHHHHHhc
Q 001423 691 IDYIQNLEKVGLLEEKEMLHLHDAVQ 716 (1079)
Q Consensus 691 ~~~i~~l~~~G~idekE~~~l~~~v~ 716 (1079)
-+.++.-++.|+++|.-+++|+.-++
T Consensus 210 ~~ll~~we~~~yf~ds~~~ql~~~~~ 235 (757)
T KOG4368|consen 210 ARLLQLWEKNGYFDDSIIQQLQSPAL 235 (757)
T ss_pred HHHHHHHhhcCchhHHHHHHhhhhhh
Confidence 34688999999999999999888766
No 141
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=25.43 E-value=1.4e+03 Score=28.71 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHhccc
Q 001423 60 PYTVALLIIGIALGSL 75 (1079)
Q Consensus 60 P~~V~lil~GIlLGp~ 75 (1079)
.-.++=++.|.+.|.+
T Consensus 314 ~GFlG~Ilag~lagyv 329 (563)
T PRK10712 314 SGFIGGIIAGFLAGYV 329 (563)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3455666777777755
No 142
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=24.92 E-value=1.1e+03 Score=26.92 Aligned_cols=89 Identities=24% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHhHhcc-ccHHHHH--H---HHhhcCCCchHHHHHH
Q 001423 121 QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSA-TDPVAVV--A---LLKELGASKKLNTIIE 194 (1079)
Q Consensus 121 ~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSa-TDPvaVv--a---ILkelgl~~rL~~LIe 194 (1079)
+++...++.+.+|+..++++++++..+++.+..+...... ++-+.++.| .-|..|. + .+...|.+.....++.
T Consensus 62 ~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~-~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivl 140 (267)
T COG1177 62 RLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKN-LLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVL 140 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 6777788888899998888888777766665433233322 222322222 3344443 3 3367889999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001423 195 GESLMNDGTAIVVYQL 210 (1079)
Q Consensus 195 GESLlNDa~AIVLf~l 210 (1079)
|-..++=+.+++....
T Consensus 141 aH~~~~lP~v~~~v~a 156 (267)
T COG1177 141 AHIVFALPFVVVVVSA 156 (267)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 9988877766555443
No 143
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=24.75 E-value=1e+03 Score=26.69 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHH
Q 001423 195 GESLMNDGTAIVVY-QLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGF--IFNDTVIEIALTLAVSYI 271 (1079)
Q Consensus 195 GESLlNDa~AIVLf-~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~--~~~d~~~ei~ltLal~yl 271 (1079)
+.+.+-|+.+=..+ .+.++...+.. ...|+++.+++.+.+..+.-++ ..+|....+.++..++..
T Consensus 30 r~~f~~~alsH~al~Gvala~~l~~~------------~~~ga~~~~ll~a~~i~~l~~~~~~~~d~~igiv~~~~~alg 97 (257)
T PF00950_consen 30 RMSFLGDALSHAALAGVALALLLGIS------------PLLGAIIFALLAALLIGFLSRRSKISEDAAIGIVFSFSFALG 97 (257)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 45667777654333 33344333322 1233344444444444333232 223455556666666655
Q ss_pred HHHHHHHhhcccchHHHHHHHHh
Q 001423 272 AFFTAQEGADVSGVLTVMTLGMF 294 (1079)
Q Consensus 272 ay~iAeE~lg~SGVLAvvvaGLv 294 (1079)
..+++ ..-+.+.=+-.+..|=.
T Consensus 98 vll~s-~~~~~~~~l~~~LfG~i 119 (257)
T PF00950_consen 98 VLLLS-LSPGYSSDLESYLFGSI 119 (257)
T ss_pred HHHHh-hCcccchhHHHHHhCCc
Confidence 55544 33334444444444433
No 144
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=24.22 E-value=7.4e+02 Score=29.19 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhHhccccHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001423 138 MISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLG 217 (1079)
Q Consensus 138 lit~~lvg~~l~~l~p~~ls~~~ALLLGAIlSaTDPvaVvaILkelgl~~rL~~LIeGESLlNDa~AIVLf~l~l~~~~~ 217 (1079)
++-.+++..++.++.|...|+..++++| .++||-|+-+|+....+.| ++|=.+-..-..+-..+...
T Consensus 195 iiFpivv~~~~~ll~P~a~pLig~Lm~G------------nl~rEsgv~~rLs~taqn~-l~nivTi~LGl~vGat~~a~ 261 (360)
T PF03977_consen 195 IIFPIVVTILVGLLLPSAAPLIGMLMFG------------NLLRESGVVERLSKTAQNE-LMNIVTIFLGLTVGATMTAE 261 (360)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH------------HHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHH
Q ss_pred CCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001423 218 KSFGWGA--IIKFLAQVSLGAVGMGLAFGIASVLWLGFIFN 256 (1079)
Q Consensus 218 ~~~s~~~--i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~ 256 (1079)
.-.++.. ++..-+..+..+.+-|+++|++..++.+.-.|
T Consensus 262 ~fL~~~tl~I~~LGl~Af~~~tagGvl~~k~mn~f~k~KiN 302 (360)
T PF03977_consen 262 TFLNPQTLKILVLGLVAFAFSTAGGVLFAKLMNLFSKGKIN 302 (360)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCC
No 145
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.85 E-value=4e+02 Score=30.98 Aligned_cols=91 Identities=22% Similarity=0.496 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhccCCchh--HHHH---hhccchh----hHHH
Q 001423 537 LLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNY--YKFL---QTSMFPQ----KLIT 607 (1079)
Q Consensus 537 ll~~~r~~~~~l~~~g~Is~~~~~~Ll~~vd~~lD~~~~~l~~w~~l~~~~~~~~~--~r~~---~~~~~~~----~~~~ 607 (1079)
++-..|+.|.+.+++ |..-.+-+|.++-+.+..-..++ |+.++..--.|.+ ||++ .+.-+|- ++-.
T Consensus 228 LMseirDnf~k~LDd---S~~GI~~~Msr~~~~lk~~D~EL--~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWD 302 (370)
T KOG4567|consen 228 LMSEIRDNFIKTLDD---SVGGIHFLMSRLSELLKKHDEEL--WRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWD 302 (370)
T ss_pred HHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHhhHHH--HHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHH
Confidence 445567777777763 33344555666666655444434 7666533222332 3332 1112221 1111
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001423 608 YFT--VERLEFACSICAAFLRAHKIAR 632 (1079)
Q Consensus 608 ~~~--~~rle~~~~i~~a~l~a~~~~~ 632 (1079)
..+ -.||+..-|+||+.|...|...
T Consensus 303 sl~sD~~rfd~Ll~iCcsmlil~Re~i 329 (370)
T KOG4567|consen 303 SLLSDPQRFDFLLYICCSMLILVRERI 329 (370)
T ss_pred HHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 222 2578999999999987766554
No 146
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=23.02 E-value=4.7e+02 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001423 308 QQSLHYFWEMVAYIANTLIFILSGVV 333 (1079)
Q Consensus 308 ~~~l~~fwe~ls~l~~~l~FillGl~ 333 (1079)
++.+++=|..+..+..+++|+.+|+.
T Consensus 536 ~~il~~~w~a~~~Lia~~L~L~iGli 561 (652)
T KOG2290|consen 536 WQILERPWRAFFHLIATLLVLCIGLI 561 (652)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhccc
Confidence 56677788888999999999999884
No 147
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=22.99 E-value=37 Score=28.51 Aligned_cols=15 Identities=47% Similarity=1.125 Sum_probs=13.6
Q ss_pred ccccCCCCCchhhhh
Q 001423 930 REHGNLMSWPEHFYK 944 (1079)
Q Consensus 930 ~~~~~~~~~~~~~~~ 944 (1079)
-|+|.|..||+.|+-
T Consensus 28 d~~G~l~~WP~GFFD 42 (52)
T PF12476_consen 28 DEDGRLSNWPEGFFD 42 (52)
T ss_pred CCCCCCccCCCchhh
Confidence 599999999999985
No 148
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=22.62 E-value=6.2e+02 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=30.1
Q ss_pred HhhcCCCchHHHHHH--HHHHHHHHHHHH--HHHHHHHHHccCCCCHHHH
Q 001423 180 LKELGASKKLNTIIE--GESLMNDGTAIV--VYQLFFQMVLGKSFGWGAI 225 (1079)
Q Consensus 180 Lkelgl~~rL~~LIe--GESLlNDa~AIV--Lf~l~l~~~~~~~~s~~~i 225 (1079)
++++|+|+++.+.+. |.++=.|++++. +..+|.+-..+-..++...
T Consensus 291 ~e~lGv~~~ia~fvlPLGat~nmdG~aly~~l~~iFiaq~~Gi~l~~~~~ 340 (437)
T PRK11283 291 MEAYGAPKSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQE 340 (437)
T ss_pred HHHcCcCccceeEEeecccccCCCccHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 367899999987764 777777877663 3444555445555665544
No 149
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.56 E-value=1.1e+03 Score=29.77 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Q 001423 201 DGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGA 280 (1079)
Q Consensus 201 Da~AIVLf~l~l~~~~~~~~s~~~i~~fl~~v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ylay~iAeE~l 280 (1079)
++...+++..+.....+...++......+ +.|.++|.++|.+..+++--..++ .....+.++.+++.....
T Consensus 364 ~G~~~~~~~~v~~~lfa~~~~P~~~~~~~----~~G~l~~~~~a~~~~~~vlP~~~~-f~~L~l~l~~~l~~~~~~---- 434 (650)
T PF04632_consen 364 SGATAVMMAAVVSSLFATLDNPAPALRLF----LIGALLGAVLAFLYLFFVLPHLDG-FPLLALVLAPFLFLGGLL---- 434 (650)
T ss_pred hhHHHHHHHHHHHHHHcCCcChHHHHHHH----HHHHHHHHHHHHHHHHHhhhccCc-HHHHHHHHHHHHHHHHHH----
Q ss_pred cccchHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001423 281 DVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVI 334 (1079)
Q Consensus 281 g~SGVLAvvvaGLvls~~~r~~~~~~~~~~l~~fwe~ls~l~~~l~FillGl~I 334 (1079)
-.++-.+....|+.+.-..-.............|.+....++.++++..+...+
T Consensus 435 ~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~l 488 (650)
T PF04632_consen 435 MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRL 488 (650)
T ss_pred HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.44 E-value=2.5e+02 Score=27.68 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 001423 232 VSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVS 269 (1079)
Q Consensus 232 v~lGgiliGlv~G~l~~~~l~~~~~d~~~ei~ltLal~ 269 (1079)
-+++|+++|+.+||+ +-+.++..+...++.+++.
T Consensus 51 efIsGilVGa~iG~l----lD~~agTsPwglIv~lllG 84 (116)
T COG5336 51 EFISGILVGAGIGWL----LDKFAGTSPWGLIVFLLLG 84 (116)
T ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcHHHHHHHHHH
Confidence 456667778777764 4455555554433333333
No 151
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=22.33 E-value=2e+03 Score=29.20 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcccCC
Q 001423 44 LVLGIACRHLLRGTRV 59 (1079)
Q Consensus 44 Lllg~~~~~L~rrl~l 59 (1079)
++.+.+.+.++.|++-
T Consensus 61 ~l~~~~~G~l~Dr~gr 76 (1146)
T PRK08633 61 LLLSSPAGFLADKFSK 76 (1146)
T ss_pred HHHhhhHhhhcccccH
Confidence 3444555666666653
No 152
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=22.12 E-value=8.8e+02 Score=30.49 Aligned_cols=139 Identities=22% Similarity=0.337 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhccCCchhHHHHhhccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001423 560 NILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFP---QKLITYFTVERLEFACSICAAFLRAHKIARQQLH 636 (1079)
Q Consensus 560 ~~Ll~~vd~~lD~~~~~l~~w~~l~~~~~~~~~~r~~~~~~~~---~~~~~~~~~~rle~~~~i~~a~l~a~~~~~~~L~ 636 (1079)
..+.+.+.+.+|.+.-.+|+=+-+.++ |.|-+-.. -|+ ++|+..-+.|. .+.++-+.. +.
T Consensus 382 ~~f~E~v~~~L~k~Gyp~CpG~vMAsn---P~Wcks~~--~W~~~l~~W~~~~~pe~----------ll~l~iF~D--~r 444 (610)
T COG2905 382 LAFGEEVCEGLDKAGYPLCPGDVMASN---PEWCKSQA--EWKDTLRRWIKEPTPEA----------LLHLSIFFD--FR 444 (610)
T ss_pred HHHHHHHHHHHHHcCCCCCCcchhcCC---ccccCCHH--HHHHHHHHHHhcCCHHH----------HHHHHHhhc--cc
Confidence 346778889999998888876655544 33322221 111 22333223232 111111111 12
Q ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhh----------------------------hhHHHHHHHHHHHHHHHHH
Q 001423 637 DFIGDSGIASVVIEESKVEGEDARKFLEDVRVN----------------------------FPQVLHVVKTRQVTYSVLN 688 (1079)
Q Consensus 637 ~f~~~~~v~~~v~~Es~~~~e~A~~~l~~l~~s----------------------------fP~v~~~ikTk~aa~~iL~ 688 (1079)
--.||....+.++.-....-+..+.+|..+... || +...|++--+.+.+-.
T Consensus 445 ~V~Gd~~L~e~l~~~l~~~a~~~~~~La~la~~a~~~~pPLglfg~l~vek~giDlKk~gifP-iv~~iR~LAL~~gi~a 523 (610)
T COG2905 445 PVAGDEALAEDLKQNLKRRAEGNRRLLARLARNALRFKPPLGLFGQLKVEKDGIDLKKGGIFP-IVHGIRLLALKEGIDA 523 (610)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCcccccceeeeccccchhcCcchh-HHHHHHHHHHHhhhhc
Confidence 223777777777666666667777666654332 22 2344444333333222
Q ss_pred -HHHHHHHHHHHcCccCHHHHHHHHHHhc
Q 001423 689 -HLIDYIQNLEKVGLLEEKEMLHLHDAVQ 716 (1079)
Q Consensus 689 -~~~~~i~~l~~~G~idekE~~~l~~~v~ 716 (1079)
.-.+.++++.+.|.++.+..+.|+|+.+
T Consensus 524 ~~T~eRleal~~~~vl~~~~~edL~eafe 552 (610)
T COG2905 524 RNTLERLEALSEAGVLSQELAEDLKEAFE 552 (610)
T ss_pred cChHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1267899999999999999999999966
No 153
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=21.60 E-value=2.2e+02 Score=28.65 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHhc
Q 001423 679 TRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQ 716 (1079)
Q Consensus 679 Tk~aa~~iL~~~~~~i~~l~~~G~idekE~~~l~~~v~ 716 (1079)
|+.=...++....+.|.+..+.|-+|++|++++.+.+.
T Consensus 34 ~~e~I~emFr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~ 71 (127)
T PF14591_consen 34 DKEEIEEMFRSDLEDILEDYKSGDIDEEEALQLLDELK 71 (127)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 54444444778888999999999999999999888765
No 154
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=20.94 E-value=1.7e+02 Score=30.80 Aligned_cols=44 Identities=5% Similarity=0.078 Sum_probs=33.2
Q ss_pred hhhhhhHHHHHHhhcccceeeecceEEEeec---CceeEEEeeeeecc
Q 001423 801 EKLTMQDMRALIAERSKMTTCLRGEIIEIPY---HCIGFLLEGFIKTH 845 (1079)
Q Consensus 801 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~g~l~~g~~~~~ 845 (1079)
.|++..+++.|. +..+...|.+|+.|--+. ..+.++++|.++-.
T Consensus 6 ~~~~~~~~~~l~-~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~ 52 (211)
T PRK11753 6 KPQTDPTLEWFL-SHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVL 52 (211)
T ss_pred CCCCHHHHHHHH-hhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEE
Confidence 356666777766 778899999999885433 46899999999843
No 155
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=20.67 E-value=3.5e+02 Score=32.21 Aligned_cols=104 Identities=11% Similarity=-0.073 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHHHhHhccccHHHHHHHHhh
Q 001423 104 VFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFP-YDWSWKTSLLLGGLLSATDPVAVVALLKE 182 (1079)
Q Consensus 104 lfLp~LLF~aGl~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~l~p-~~ls~~~ALLLGAIlSaTDPvaVvaILke 182 (1079)
.++-..++.-|...|++.++..++....+++.-+. ...+.-...+.+.. ..+|...+ ..+.++++..|.-..+.+..
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~~~~~~~lP~~~~-ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFLLSKVLLLPAALA-AGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHhhhhHhhCCcccc-ceeEEEEeccCCcchhhhee
Confidence 44566788899999999999887766655432221 22211111111100 02222222 56677777777777766655
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001423 183 LGASKKLNTIIEGESLMNDGTAIVVYQL 210 (1079)
Q Consensus 183 lgl~~rL~~LIeGESLlNDa~AIVLf~l 210 (1079)
+-.+... .+......++-..+++++-+
T Consensus 195 ~~~~g~v-~lsilmT~~stv~avi~~pl 221 (371)
T KOG2718|consen 195 KRLPGDV-TLSILMTTISTVLAVILTPL 221 (371)
T ss_pred ecCCcch-hhHHHHHHHHHHHHHHHHHH
Confidence 4433333 34444444454445444433
No 156
>PRK10711 hypothetical protein; Provisional
Probab=20.32 E-value=1.2e+03 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=24.0
Q ss_pred hcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001423 115 FAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKL 150 (1079)
Q Consensus 115 l~ld~~~lrr~~~~illLAv~gvlit~~lvg~~l~~ 150 (1079)
+--+++.+|+++.+++.--++|.+++.+....++++
T Consensus 77 LY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~ 112 (231)
T PRK10711 77 LYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALW 112 (231)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678899999999877667776655544444433
No 157
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=20.30 E-value=1.6e+03 Score=27.25 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHc
Q 001423 201 DGTAIVVYQLFFQMVL 216 (1079)
Q Consensus 201 Da~AIVLf~l~l~~~~ 216 (1079)
+..++++|.++++++.
T Consensus 149 nvL~vIvFai~~GiAl 164 (428)
T PRK01663 149 DILQVLLFAVLFGFAL 164 (428)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 6789999999887654
No 158
>COG3671 Predicted membrane protein [Function unknown]
Probab=20.23 E-value=7.3e+02 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 001423 309 QSLHYFWEMVAYIANTLIFILSGV 332 (1079)
Q Consensus 309 ~~l~~fwe~ls~l~~~l~FillGl 332 (1079)
-.++.||-.+.+...+++|.++|+
T Consensus 65 f~iRTFw~~vl~~iIg~Llt~lgi 88 (125)
T COG3671 65 FLIRTFWLAVLWWIIGLLLTFLGI 88 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678877777777777777666
Done!