RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001423
(1079 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 9e-13
Identities = 84/651 (12%), Positives = 177/651 (27%), Gaps = 180/651 (27%)
Query: 304 KGESQQSLHYFWEMVAYIANTL-IFILSGVVIAEGILGNDKIF-----QNHGNSWGYLIL 357
K +L FW +++ + F+ E +L + F + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 358 LYIFVQVSRLFVVGTLYP-----------VLRNFGYGLEWKEAIILVWSGLRGAVALSLS 406
+YI Q RL+ ++ LR L + +++ G+ G+ ++
Sbjct: 111 MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA 167
Query: 407 LSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTT------QYILHLLDMDKLSA 460
L V S + I +L L S Q +L+ +D + S
Sbjct: 168 LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 461 TKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASE 520
+ + + + L K Y CL L V ++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL--LKS------------KPYENCLLVLLNV-----QNAK 257
Query: 521 TGDSLDP-------TNLRDIRIRLLNGVQAAYWAMLDEGRITQT---AANILMQSVDEGI 570
++ + T R ++ LD +T T ++L++ +D
Sbjct: 258 AWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 571 DLASNELCD---------WRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSIC 621
E+ ++D ++ + +K + ++L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-------------HVNCDKLTTIIESS 362
Query: 622 AAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFP-QVLHVV--- 677
L + R+ + F + P +L ++
Sbjct: 363 LNVLEPAEY-RKMFDRL---------SV------------FPPSAHI--PTILLSLIWFD 398
Query: 678 KTRQVTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQWTSKSIRNKHSLHPVFTH 734
+ V+N L Y L+E+ KE + + + N+++LH
Sbjct: 399 VIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-- 449
Query: 735 GSNLGLYEVLIGKPY--MSDMVTDSVVLCFF------IESDKILSILRSDPAVEDFLWQQ 786
+ Y + + D IE + +++ R DF + +
Sbjct: 450 ---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLE 504
Query: 787 SAIALSRILLPQIFEKL-TMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFI-KT 844
I L T+Q ++ Y + +I
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF--------------------Y-------KPYICDN 537
Query: 845 HGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARV 895
E L+ +P S T + ++ + E +V
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAHKQV 587
Score = 54.5 bits (130), Expect = 2e-07
Identities = 74/439 (16%), Positives = 132/439 (30%), Gaps = 129/439 (29%)
Query: 609 FTVERLEFACS-ICAAFLRAHK--IARQQLHDF----IGDSGIASVVIEESKVEG----- 656
F ++ I + F A + + D + I +++ + V G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 657 --------EDARKFLEDV-RVNFPQVLHVVKTRQ-------VTY-SVLNHLIDYIQNLEK 699
E +KF+E+V R+N+ ++ +KT Q Y + L + Q K
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 700 VGLLEEKEMLHLHDAVQWTSKSIRNKHSLHP---VFTHGSNLGLYEVLIGKPYM-SDMVT 755
+ + L L A+ L P V G LG GK ++ D+
Sbjct: 129 YNVSRLQPYLKLRQALL----------ELRPAKNVLIDGV-LG-----SGKTWVALDVCL 172
Query: 756 DSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRI----LLPQIFEKLTMQDMRAL 811
V C KI F W + L + ++ +KL Q
Sbjct: 173 SYKVQCKM--DFKI------------F-W----LNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 812 IAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLS-FRSA 870
+ + I++ H I L +K+ + L L+ L ++A
Sbjct: 214 TSRSDHSSN------IKLRIHSIQAELRRLLKSKPYENCL------LV-----LLNVQNA 256
Query: 871 ETSGVEAVSFSHQGSC-YLVETRARVIIFDIAAFEADKAVV---------RRTSSLFSHS 920
+ A F+ C L+ TR + + ++A + SL
Sbjct: 257 KA--WNA--FNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 921 SDQPHKSLSRE----------------HGNLMSWPEHFYKARQQKQNSEETDRKANSLSA 964
D + L RE L +W +K + + + N L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEP 368
Query: 965 RAMQ-----LSIFGNMVDV 978
+ LS+F +
Sbjct: 369 AEYRKMFDRLSVFPPSAHI 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 3e-10
Identities = 86/560 (15%), Positives = 167/560 (29%), Gaps = 223/560 (39%)
Query: 447 QYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGD--LGDDE------ELGPVDWPT- 497
Y+ L++ K+ ++LN F + L ++ +L + T
Sbjct: 66 GYVSSLVEPSKVGQFD---------QVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTT 115
Query: 498 ---VKRYIRC---LNDLEGVPMHPHSAS------ETGDSLDPTNLRDIRIRLLNGVQ--- 542
K I+ + P S S G++ ++ + G Q
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---------QLVAIFGGQGNT 166
Query: 543 AAYWAMLDE------------GRITQTAANILMQSVDE----------GIDLASNELCDW 580
Y+ +E G + + +A L + + G+++ W
Sbjct: 167 DDYF---EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-----W 218
Query: 581 RGLKDN-------------VSFP--------NYYKFLQTSMF-PQKLITYFTVERLEFAC 618
L++ +S P +Y + F P +L +Y
Sbjct: 219 --LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK------GA 270
Query: 619 SIC------AAFLRA-------HKIARQQLHD--FIG--------DSGIASVVIEESKVE 655
+ A + R+ + FIG ++ + ++E+S
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 656 GEDA-----------RKFLEDV--RVNFPQVLHVVKTRQVTYSVLN---HLI--DYIQNL 697
E ++ ++D + N H+ +QV S++N +L+ Q+L
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTN----SHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 698 EKVGLLEEKEMLHLHD--AVQWTSKSIRNKHSL-HPVFTHGSNLGLYEVL-IGKPYMSDM 753
GL L L A +S R S F++ L + P+ S +
Sbjct: 387 Y--GL-----NLTLRKAKAPSGLDQS-RIPFSERKLKFSN-------RFLPVASPFHSHL 431
Query: 754 VTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRAL-- 811
+ + D I D + + I + P +++ D+R L
Sbjct: 432 LVPAS--------DLINK----DLVKNNVSFNAKDIQI-----P-VYDTFDGSDLRVLSG 473
Query: 812 -IAERSKMTTCLRGEIIEIP-----------YHCIGFLLEGFIKTHGLQEELITPPAALI 859
I+ER + II +P H + F G GL
Sbjct: 474 SISER------IVDCIIRLPVKWETTTQFKATHILDF---GPGGASGL------------ 512
Query: 860 PSQGNLSFRSAETSGVEAVS 879
G L+ R+ + +GV +
Sbjct: 513 ---GVLTHRNKDGTGVRVIV 529
Score = 58.9 bits (142), Expect = 1e-08
Identities = 48/290 (16%), Positives = 95/290 (32%), Gaps = 91/290 (31%)
Query: 230 AQVSLGAVGMGL----AFGIASVLW----------LGFIFNDTVIEIALTLAVSYIAFFT 275
+Q GMG+ A +W GF ++++I + V+ F
Sbjct: 1626 SQ----EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLTIHFG 1677
Query: 276 AQEGADVSGVLTVMTLGMFYAA--VARTAFKGESQQSLHYFWEMVAYI----ANT--LIF 327
++G + + M FK ++ S Y + + T +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 328 ILS----GVVIAEGILGNDKIFQNHGNSWG-YLILLYIFVQVSRLFVVGTLYPVLRNFGY 382
++ + ++G++ D F H S G Y + L +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGH--SLGEY----------AALASLA---------DV 1776
Query: 383 GLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSS---LITSETGTLFVFF--------- 430
+ + + +V+ RG +++ ++V R G S +I G + F
Sbjct: 1777 -MSIESLVEVVF--YRG---MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 431 ------TGGIVFLTLIVN--GSTTQYIL--HLLDMDKLSATKRRILDYTK 470
TG +V IVN QY+ L +D ++ +L++ K
Sbjct: 1831 ERVGKRTGWLVE---IVNYNVENQQYVAAGDLRALDTVT----NVLNFIK 1873
Score = 44.7 bits (105), Expect = 2e-04
Identities = 93/616 (15%), Positives = 181/616 (29%), Gaps = 239/616 (38%)
Query: 57 TRVPYTVALLIIGIALGSLEYG----TSH-----QL-------------GKIGDG----- 89
TR P T ++ GSLE+ T+ QL G D
Sbjct: 6 TR-PLT-------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 90 IRLWAS--------IDP------DLLLAVFLPALLFESSF--AMEVHQIKRCLVQM--IL 131
L ++P D +L + L FE+ + ++H + L+Q
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTT 115
Query: 132 LAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVA-VVAL----------L 180
L +I + A + P+D S L + + A +VA+
Sbjct: 116 LVKTKELIKNYIT-ARIMAKRPFD-KKSNSALFR---AVGEGNAQLVAIFGGQGNTDDYF 170
Query: 181 KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMG 240
+EL + L Y + ++ S + L+++ +
Sbjct: 171 EEL---RDLYQT---------------YHVLVGDLIKFSA------ETLSELIRTTLDAE 206
Query: 241 LAF--GIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 298
F G+ + WL + + T Y+ +S L + Y
Sbjct: 207 KVFTQGLNILEWL----ENP----SNTPDKDYLLS------IPISCPLIGVIQLAHYVVT 252
Query: 299 ARTAFKGESQQSLHYFWEMVAYIANTLIF---ILSGVVIAEGILGNDKIFQNHGNSWGYL 355
A+ G + E+ +Y+ +++ V IAE +SW
Sbjct: 253 AKLL--GFTPG------ELRSYLKGATGHSQGLVTAVAIAET------------DSWES- 291
Query: 356 ILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRG-----AVALSLSL--- 407
F R + L + G+R +L S+
Sbjct: 292 -----FFVSVRKA---------------ITV-----LFFIGVRCYEAYPNTSLPPSILED 326
Query: 408 SVKRSSGGSSLITSETGTLFVFFTGGI------------VFLTLIVNGSTTQYI------ 449
S++ + G S + S + + V ++L VNG+ +
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGA-KNLVVSGPPQ 384
Query: 450 -LHLLDMD--KLSA-----------TKRRILDYTKY---------EMLNTAFKTF-GDLG 485
L+ L++ K A ++R++ ++ +L A DL
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 486 DDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLR----DIRIRLLNGV 541
+ V + D+ +P++ + G ++LR I R+++ +
Sbjct: 445 KNN----VSFNA--------KDI-QIPVY---DTFDG-----SDLRVLSGSISERIVDCI 483
Query: 542 --QAAYWAMLDEGRIT 555
W + + T
Sbjct: 484 IRLPVKWETTTQFKAT 499
Score = 44.3 bits (104), Expect = 2e-04
Identities = 86/585 (14%), Positives = 162/585 (27%), Gaps = 194/585 (33%)
Query: 596 LQTSMF-PQKLITYFTVERL--EFACSI-------------------CAAFLR--AHKIA 631
L+ + P +F +L +F + FL + +
Sbjct: 16 LEHVLLVPTAS--FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 632 RQQLHDFIGDSGIASVVIE-ESKV-EGED----ARKFLEDVRVNFPQVLHVVKTRQVTYS 685
++ F D + + E E+ EG D A K L++ + ++K +
Sbjct: 74 PSKVGQF--DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---YIT 128
Query: 686 VLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQWTSKSIRNKHSLHPVFT-HGSNLG----- 739
L AV L +F G+
Sbjct: 129 ARIMAKRPFDKKSNSALFR---------AVG------EGNAQLVAIFGGQGNTDDYFEEL 173
Query: 740 --LYEVLIGKPYMSDMVTDS-VVLCFFIESD--------KILSILR--SDPAV---EDFL 783
LY+ + D++ S L I + + L+IL +P+ +D+L
Sbjct: 174 RDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 784 WQQSAIALSRILLPQIF-------------EKLTMQDMRALIAERSKMTTCLRG------ 824
+I +S P I T ++R+ + T +G
Sbjct: 232 ---LSIPIS---CPLIGVIQLAHYVVTAKLLGFTPGELRSYL---KGATGHSQGLVTAVA 282
Query: 825 --------EIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETS--- 873
I L FI G++ P +L PS S + E
Sbjct: 283 IAETDSWESFFVSVRKAITVLF--FI---GVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 874 --GVEAVSFSHQGSCYLVETRARV----IIFDIAAFEADKAVV---------------RR 912
+ ++ Q Y+ +T + + + I+ K +V R+
Sbjct: 338 MLSISNLTQE-QVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 913 TSSLFSHSSDQ---PH--KSLSREHGNL-MSWPEH--FYKARQQKQNSEETDRKANSLSA 964
+ DQ P + L + L ++ P H D N++S
Sbjct: 396 AKA--PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI---NKDLVKNNVSF 450
Query: 965 RAMQLSIFGNMVDVQRRSRSFATGT-QTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVR- 1022
A + I V + T ++ S SI + ++ + V+
Sbjct: 451 NAKDIQI-----PV------YDTFDGSDLRVLS---GSISERIVDCIIRLP------VKW 490
Query: 1023 EKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRI 1067
E ++T H++D+ + L R
Sbjct: 491 ETTTQFKAT----------------HILDFGPGGASGLGVLTHRN 519
Score = 41.6 bits (97), Expect = 0.002
Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 79/242 (32%)
Query: 883 QGS--------CYLVETRARVIIFDIAAFEADK-----------AVVRR-TSSLFSHSSD 922
QGS Y A+ + ++ AD +V +L H
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDV-WN----RADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 923 QPHKSLSREHGNLMSWPEHFYKARQQ-KQNSEETDRKANSLSAR---------------- 965
+ K + RE+ + M + E + + ++ +E + + S + R
Sbjct: 1679 EKGKRI-RENYSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 966 -AMQLSIFGNMVDVQRRSR-------SFATGTQTMQSHSL-----------SFPSIPSHL 1006
M+ + F ++ +S+ +FA G HSL SI S +
Sbjct: 1737 TLMEKAAFEDL-----KSKGLIPADATFA-G------HSLGEYAALASLADVM-SIESLV 1783
Query: 1007 NRRLVSVRSEGATTVREKLEVSRSTGQIPA-PPSQNAGANESHVIDYSSDDSGAEDELIV 1065
+V R + E+ RS + A P + A + + Y + G +V
Sbjct: 1784 --EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 1066 RI 1067
I
Sbjct: 1842 EI 1843
Score = 39.6 bits (92), Expect = 0.007
Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 63/231 (27%)
Query: 1 MESVSEGLLQLPYRTLEEEQKSGGG-------SSPSEGNPTDAVIFVGISLVL-GI-ACR 51
++ +E L +L TL+ E+ G +PS D ++ + IS L G+
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 52 HLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLF 111
H Y V ++G G L S+ G G L+ AV +
Sbjct: 248 H--------YVVTAKLLGFTPGEL---RSYLKGATGHS--------QGLVTAVAIAETDS 288
Query: 112 ESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSAT 171
SF + V + L FF+G +P TSL L +
Sbjct: 289 WESFFVSVRKAITVL---------------FFIGVRCYEAYP-----NTSLPPSILEDSL 328
Query: 172 D-----P---VAVVAL-LKELGAS-KKLNTIIEGE-----SLMNDGTAIVV 207
+ P +++ L +++ K N+ + SL+N +VV
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Score = 34.3 bits (78), Expect = 0.29
Identities = 41/226 (18%), Positives = 69/226 (30%), Gaps = 87/226 (38%)
Query: 5 SEGLLQL-----P---------YRTLEEEQKSGGGSSPSEGN-PTDAVIFVGISLVLGIA 49
+GLL P + L+ + G P DA F G SL
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSK-----------GLIPADAT-FAGHSL----- 1764
Query: 50 CRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPAL 109
G Y AL + + S+E + + VF +
Sbjct: 1765 ------GE---YA-ALASLADVM-SIE-----------SLVEV-----------VFYRGM 1791
Query: 110 LFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLL----- 164
+ A+ ++ R MI + PG + ++F A + +T L+
Sbjct: 1792 TMQV--AVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVV--ERVGKRTGWLVEIVNY 1846
Query: 165 ---------GGLLSATDPVAVVALLKELGASKKLNTIIEGESLMND 201
G L A D V +L + +K++ I +SL +
Sbjct: 1847 NVENQQYVAAGDLRALD--TVTNVLNFIKL-QKIDIIELQKSLSLE 1889
Score = 31.9 bits (72), Expect = 1.7
Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 41/142 (28%)
Query: 166 GLLSATD---P------VAVVALLKELGASKKLNTIIEGESLMNDG--TAIVVYQLFFQM 214
GLLSAT P A LK G + G SL G A+
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGL-IPADATFAGHSL---GEYAALA-------- 1771
Query: 215 VLGKSFGWGAIIKFLAQ--------VSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTL 266
L ++++ + V +G +G+ ++ N +A +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS-NYGMIAI-------NPG--RVAASF 1821
Query: 267 AVSYIAFFTAQEGADVSGVLTV 288
+ + + + G ++ +
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEI 1843
Score = 29.6 bits (66), Expect = 6.6
Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 68/213 (31%)
Query: 441 VNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKR 500
+N +T Y + LSAT+ +T+ + F DL + G +
Sbjct: 1710 INEHSTSYTFRS-EKGLLSATQ-----FTQPALTLMEKAAFEDL---KSKGLIPADAT-- 1758
Query: 501 YIRCLNDLEGVPMHPHS-------ASETGDSLDPTNLRDIRIRLLN--G--VQAAY---- 545
G HS AS D + + + + ++ G +Q A
Sbjct: 1759 -------FAG-----HSLGEYAALAS-LADVMS---IESL-VEVVFYRGMTMQVAVPRDE 1801
Query: 546 -----WAM--LDEGRITQTAANILMQSVDEGIDLASNELC----------------DWRG 582
+ M ++ GR+ + + +Q V E + + L D R
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 583 LKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE 615
L + N+ K + + +L ++E +E
Sbjct: 1862 LDTVTNVLNFIKLQKIDI--IELQKSLSLEEVE 1892
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.019
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 81 HQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAME 118
L K+ ++L+A D A PAL +++ ME
Sbjct: 20 QALKKLQASLKLYA---DD--SA---PALAIKAT--ME 47
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein,
NHE1; NMR {Homo sapiens}
Length = 33
Score = 31.9 bits (72), Expect = 0.055
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 159 KTSLLLGGLLSATDPVAVVALLKELGASK 187
K +LL G ++SA DPVAV+A+ +E+ K
Sbjct: 4 KDNLLFGSIISAVDPVAVLAVFEEIHKKK 32
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural
genomics, PSI-2, protein S initiative; HET: PG4 EPE;
1.82A {Clostridium difficile}
Length = 145
Score = 30.3 bits (69), Expect = 1.7
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 623 AFLRAHKIARQQLHDFIG-----------DSGIASVVIEESKVEGEDARKFLEDVRVNFP 671
A A + A+ H+ +G + GIA+ V+ + + D+
Sbjct: 15 AIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGE 74
Query: 672 QV 673
++
Sbjct: 75 EI 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 30.7 bits (70), Expect = 3.0
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 623 AFLRAHKIARQQLHDFIG---------DSGIASVVIEESKVEGEDARKFLED-VRVNFPQ 672
+ A AR+ H+F+ + A +E V+ R+ LE + P
Sbjct: 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV 68
Query: 673 VLHVVKTRQVTYS-----VLNHLIDYIQNLEK---------VGLLEEKE 707
+ + R + VL + ++Q+ + V + E+E
Sbjct: 69 LPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics,
PSI2, MCSG, protein structure initiative; 1.60A
{Corynebacterium glutamicum}
Length = 146
Score = 29.2 bits (66), Expect = 3.9
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 623 AFLRAHKIARQQLHDFIG-----------DSGIASVVIEESKVEGEDARKFLEDV 666
+ A + AR H++IG G+A+ +E + + R+ +E++
Sbjct: 14 VIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEI 68
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane
protein, transmembrane segment, helix-KINK-helix; NMR
{Synthetic}
Length = 28
Score = 26.5 bits (58), Expect = 3.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 189 LNTIIEGESLMNDGTAIVVYQ 209
L+ ++ GESL+ND +V+Y+
Sbjct: 6 LHILVFGESLLNDAVTVVLYK 26
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 29.2 bits (66), Expect = 4.3
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 633 QQLHDFIGDSG--IASVVIEESKVEGEDARKFLEDVRVNFPQVL 674
Q+ G + +V ++ DA KFL V F
Sbjct: 51 NQMQAKYKAKGFQVVAVNLDAKT---GDAMKFLAQVPAEFTVAF 91
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC;
transcription, proteolysis; 1.50A {Bacillus subtilis}
PDB: 2y1r_A* 2k77_A
Length = 150
Score = 28.8 bits (65), Expect = 4.6
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 623 AFLRAHKIARQQLHDFIG-----------DSGIASVVIEESKVEGEDARKFLEDV 666
A + A + H+ IG GIA+ ++ + E +K +E +
Sbjct: 13 VLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESL 67
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix,
two-stranded antiparallel coiled CO structural genomics,
PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB:
1xsx_A
Length = 95
Score = 27.9 bits (62), Expect = 6.2
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 678 KTRQVTYSVLNH--LIDYIQNLEKVGLLEEKE 707
KTR + + L++ YI+ L + ++ ++
Sbjct: 23 KTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 54
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 29.6 bits (66), Expect = 6.4
Identities = 22/191 (11%), Positives = 57/191 (29%), Gaps = 11/191 (5%)
Query: 214 MVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIA- 272
+ + W + F+A + G + + W + + Y+
Sbjct: 359 AIFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLGN 418
Query: 273 --FFTAQEGADVSG------VLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANT 324
F +G + ++ V+ + ++ V R +G ++S + + +
Sbjct: 419 EWFLLGHQGWEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAI 478
Query: 325 LIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGL 384
+ N + W + + +V + V+G L LR
Sbjct: 479 AVPFFYIFAFFIQPDTNFTMAD-FWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKS 537
Query: 385 EWKEAIILVWS 395
+ A+ ++
Sbjct: 538 TVR-ALYFQFT 547
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 29.4 bits (67), Expect = 6.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 628 HKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRV 668
H IA++Q+ + ++ E A+K +E ++V
Sbjct: 293 HDIAKKQMTGY---GSTFLFEMKS----FEAAKKLMEHLKV 326
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 28.4 bits (64), Expect = 7.0
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 633 QQLHDFIGDSG--IASVVIEESKVEGEDARKFLEDVRVNFPQVL 674
+ G I +V + ESK F++ VNFP VL
Sbjct: 49 ANQYKHFKSQGVEIVAVNVGESK---IAVHNFMKSYGVNFPVVL 89
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 29.0 bits (66), Expect = 7.8
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 628 HKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRV 668
H+IA++Q+ F + + ++ E A+K L++ V
Sbjct: 234 HEIAKKQMKMF---GSMIAFDVDG----LEKAKKVLDNCHV 267
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 29.0 bits (66), Expect = 8.6
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 628 HKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRV 668
+ +ARQQ+ G+ + ++ R+F+ +++
Sbjct: 300 YTLARQQMSQP---GGMIAFELKGGI---GAGRRFMNALQL 334
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,336,211
Number of extensions: 1022126
Number of successful extensions: 1741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1731
Number of HSP's successfully gapped: 38
Length of query: 1079
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 975
Effective length of database: 3,798,009
Effective search space: 3703058775
Effective search space used: 3703058775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.9 bits)