RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 001423
         (1079 letters)



>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 90

 Score = 26.9 bits (60), Expect = 4.1
 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 678 KTRQVTYSVLNH--LIDYIQNLEKVGLLEEKE 707
           KTR +  + L++     YI+ L  + ++ ++ 
Sbjct: 21  KTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 52


>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 27.5 bits (60), Expect = 9.3
 Identities = 10/57 (17%), Positives = 21/57 (36%)

Query: 235 GAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTL 291
             + +G   G A  +    +F    +E          A   A   A ++G++ V+ +
Sbjct: 343 PMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEM 399


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,867,447
Number of extensions: 180463
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 3
Length of query: 1079
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 984
Effective length of database: 1,103,246
Effective search space: 1085594064
Effective search space used: 1085594064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)