Query 001426
Match_columns 1079
No_of_seqs 768 out of 6844
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:08:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001426.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_727-731//hhsearch_pdb/001426hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 706.0 31.5 655 20-688 6-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 587.2 28.5 567 82-655 93-742 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 534.1 30.9 597 58-680 4-625 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 522.3 29.7 554 81-659 41-627 (680)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 489.1 28.8 534 60-658 14-564 (606)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 481.1 44.6 531 59-660 5-566 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 480.2 29.7 531 91-679 14-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 475.2 31.2 538 55-661 4-565 (606)
9 4eco_A Uncharacterized protein 1.0 1 1 472.2 23.2 518 22-658 26-604 (636)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 470.5 37.4 522 92-678 7-561 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=706.04 Aligned_cols=655 Identities=33% Similarity=0.518 Sum_probs=553.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC--------CCCCCCCCCCC
Q ss_conf 1012491058999877517789998554588999999996321231179605871345888--------76234667752
Q 001426 20 AISALNPEGLSLLSWLSTFNSSSSATFFSSWNPSHRNPCNWDYIKCSRTEIAITSIHIPTS--------FPYQLLSFSHL 91 (1079)
Q Consensus 20 ~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~W~~~~~~~C~w~gv~C~~~~~~~~~~~lp~~--------~~~~~~~~~~l 91 (1079)
+..+.+.|++|||+||+++. ++ . .+++|+. +.|||.|+||+|+ ..+++.++++.. ++..+..++++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~-~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DK-N-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CT-T-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CCCCCHHHHHHHHHHHHHCC-CC-C-CCCCCCC-CCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 56687899999999996678-96-2-1468789-9987688413878--9927898778998677557669657316802
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEC
Q ss_conf 3998389955555972312558888896369864489986--44876744477514886654676432-26344554853
Q 001426 92 TSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPE--EIGKLAELELLSLNSNSIHGGIPREI-GNCSKLRRLEL 168 (1079)
Q Consensus 92 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L 168 (1079)
+.++++.+++. .+|+.++.+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++
T Consensus 80 ~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 80 ESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 24678688867-87033245788998989898578707896787278899989896882677479778563889998989
Q ss_pred CCCCCCCCCCHH---HCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 554456778800---00245689988099997556899221364325676302678866788430012343310233332
Q 001426 169 YDNQLSGNIPAE---IGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGLADTGISGQIPRSVGELTNLRTLSVYTAN 245 (1079)
Q Consensus 169 ~~n~l~~~~p~~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 245 (1079)
++|.+++..|.. ++.+++|++|++.+|. +.+..+ +..++.|++|++++|.+.+.+|. ++++++|++|++++|.
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCC
T ss_conf 7983588587155664358988989897880-346578--45478689898928827887711-1269999989794885
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCC
Q ss_conf 235577312365656542053443535799673588777768633765689867533367-8763898035445676641
Q 001426 246 ITGYIPEEIGNCSALENLFLYENQIFGKIPDELGSLKNLKRLLLWQNNLSGSIPEALGNC-SSLTVIDVSLNSLGGEVPV 324 (1079)
Q Consensus 246 ~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~ 324 (1079)
+.+.+|..+..+++|++|++++|.+.+..|.. .+++|++|++++|.+.+.+|..+... ++|+.|++++|++.+..|.
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCH
T ss_conf 87816577744888898989888665716724--3687898979178557725888884468688998968967784236
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCHH-HHHHHHHHCCCCCCCCC-CCCC--
Q ss_conf 1122123340102364344434511-13656676741268734333883214624-69998740476655678-5211--
Q 001426 325 SLANLVALEELLLSGNNISGEIPSF-FGNFSRLKQLELDNNRFFGQIPPTIGQLK-ELLLFFAWQNQLHGNIP-ELAY-- 399 (1079)
Q Consensus 325 ~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~-~~~~-- 399 (1079)
.+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|++.+.+|..+..+. +|+.+.+..|++.+..+ .+..
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCC
T ss_conf 77558776677897885257379788724888878848478437623098986322771998627874787676665332
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 36672896657778899654122521234211223300165787655999833999227976566853235346448655
Q 001426 400 CVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISNRFSGEIPPEIGGCTGLIRLRLGSNNFSGHIPSRIGLLHRLTFLE 479 (1079)
Q Consensus 400 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 479 (1079)
+++|++|++++|.+++..|..+.++++|++|++++|.+++.+|..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEE
T ss_conf 47761898977846542487775689879898958846685467774499889898978815471897882877732999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 12576568889988987756678468995765688244530478802101542346656323467888637613650247
Q 001426 480 LSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTIPSSLEFLFGLNVLDLSMNSIGGTIPENLGKLTSLNKLVLSKNNITG 559 (1079)
Q Consensus 480 ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 559 (1079)
+++|++++..|..+.++++|+.|++++|++.+.+|.++..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC
T ss_conf 01995137588788169989989753995189687688568999989897894337488777088989989898884688
Q ss_pred CCCCC----------------------------------------------------------------------CCCCC
Q ss_conf 78775----------------------------------------------------------------------45345
Q 001426 560 LIPKS----------------------------------------------------------------------LGLCK 569 (1079)
Q Consensus 560 ~~~~~----------------------------------------------------------------------~~~l~ 569 (1079)
..|.. +..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred CCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCC
T ss_conf 27957860421223201345421111344432222332221001355632320023211001133100462743340335
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEC
Q ss_conf 553124547525578815441010004334056874446611113478866478356751466444-4585465530002
Q 001426 570 DLQLLDLSSNRINGSIPEEIGRLQGLDILLNLSWNALTGPIPESFSNLSKLANLDLSNNMLTGSLK-VLGSLDNLVSLNV 648 (1079)
Q Consensus 570 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~l 648 (1079)
.|+.||+++|++++.+|..++.+..| ..|++++|.+++.+|..|..+++|+.|||++|++++.+| .+..++.|+.||+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L-~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCC-CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 66579785880155587788414157-87848688038878967847778998989788023868867757887897879
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 588586778997666989987666897685588-7776788
Q 001426 649 SYNHFSGILPNTKLFHGLPASAFYGNQQLCVNR-SQCHINN 688 (1079)
Q Consensus 649 s~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~-~~c~~~~ 688 (1079)
++|+++|.+|....+..++..+|.||+.+|... +.|....
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred CCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCC
T ss_conf 68815560899601024897775698321088776788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=587.25 Aligned_cols=567 Identities=35% Similarity=0.537 Sum_probs=504.0
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC--
Q ss_conf 62346677523998389955555972--31255888889636986448998644-87674447751488665467643--
Q 001426 82 PYQLLSFSHLTSLVLSNANLTGEIPP--AIGNLSSLINLDLSFNALTGNIPEEI-GKLAELELLSLNSNSIHGGIPRE-- 156 (1079)
Q Consensus 82 ~~~~~~~~~l~~L~L~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~-- 156 (1079)
|..+..++++++|+|++|.++|.+|. .++++++|++|+|++|.+.+..|..+ .++++|++|+|++|.+.+..|..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 03324578899898989857870789678727889998989688267747977856388999898979835885871556
Q ss_pred -CCCCCCCCEEECCCCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -2263445548535544567788000024568998809999755689922136432567630267886678843001234
Q 001426 157 -IGNCSKLRRLELYDNQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGLADTGISGQIPRSVGELTN 235 (1079)
Q Consensus 157 -~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 235 (1079)
+.++++|++|++++|.+++..+. +.+++|++|++.+|. +.+.+|. +++++.|++|++++|.+.+.+|..+.++++
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred HHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCC-CCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 643589889898978803465784--547868989892882-7887711-126999998979488587816577744888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 3310233332235577312365656542053443535799673588-777768633765689867533367876389803
Q 001426 236 LRTLSVYTANITGYIPEEIGNCSALENLFLYENQIFGKIPDELGSL-KNLKRLLLWQNNLSGSIPEALGNCSSLTVIDVS 314 (1079)
Q Consensus 236 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 314 (1079)
|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 898989888665716724--368789897917855772588888446868899896896778423677558776677897
Q ss_pred CCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--HHHHHHHHHHCCCC
Q ss_conf 54456766411-12212334010236434443451113656-6767412687343338832146--24699987404766
Q 001426 315 LNSLGGEVPVS-LANLVALEELLLSGNNISGEIPSFFGNFS-RLKQLELDNNRFFGQIPPTIGQ--LKELLLFFAWQNQL 390 (1079)
Q Consensus 315 ~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~l~l~~n~~ 390 (1079)
+|++.+.+|.. +..+++|+.|++++|.+.+..|..+..++ +|+.|++++|++.+..+..+.. +++|+.+.+..|++
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 88525737978872488887884847843762309898632277199862787478767666533247761898977846
Q ss_pred CCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 55678-52113667289665777889965412252123421122330016578765599983399922797656685323
Q 001426 391 HGNIP-ELAYCVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISNRFSGEIPPEIGGCTGLIRLRLGSNNFSGHIPSRI 469 (1079)
Q Consensus 391 ~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 469 (1079)
.+.++ .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++..|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHH
T ss_conf 54248777568987989895884668546777449988989897881547189788287773299901995137588788
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 53464486551257656888998898775667846899576568824453047880210154234665632---------
Q 001426 470 GLLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTIPSSLEFLFGLNVLDLSMNSIGGTIPEN--------- 540 (1079)
Q Consensus 470 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------- 540 (1079)
..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHH
T ss_conf 16998998975399518968768856899998989789433748877708898998989888468827957860421223
Q ss_pred -------------------------------------------------------------CCCCCCCCEEECCCCCCCC
Q ss_conf -------------------------------------------------------------3467888637613650247
Q 001426 541 -------------------------------------------------------------LGKLTSLNKLVLSKNNITG 559 (1079)
Q Consensus 541 -------------------------------------------------------------~~~l~~L~~L~L~~N~l~~ 559 (1079)
|..+++|+.|+|++|++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 20134542111134443222233222100135563232002321100113310046274334033566579785880155
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 78775453455531245475255788154410100043340568744466111134788664783567514664444585
Q 001426 560 LIPKSLGLCKDLQLLDLSSNRINGSIPEEIGRLQGLDILLNLSWNALTGPIPESFSNLSKLANLDLSNNMLTGSLKVLGS 639 (1079)
Q Consensus 560 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~ 639 (1079)
.+|..++.++.|+.|+|++|++++.+|..|+.++.| ..|++++|++++.+|..+..+++|+.|++++|++++.+|....
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC-CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHH
T ss_conf 587788414157878486880388789678477789-9898978802386886775788789787968815560899601
Q ss_pred CCCCCEEECCCCC-CCC
Q ss_conf 4655300025885-867
Q 001426 640 LDNLVSLNVSYNH-FSG 655 (1079)
Q Consensus 640 l~~L~~L~ls~N~-l~~ 655 (1079)
+..+....+.+|+ ++|
T Consensus 726 ~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGSCGGGGCSCTEEES
T ss_pred HCCCCHHHHCCCCHHCC
T ss_conf 02489777569832108
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=534.08 Aligned_cols=597 Identities=22% Similarity=0.217 Sum_probs=421.0
Q ss_pred CCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 96321231179605871345888762346677523998389955555972312558888896369864489986448767
Q 001426 58 CNWDYIKCSRTEIAITSIHIPTSFPYQLLSFSHLTSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPEEIGKLA 137 (1079)
Q Consensus 58 C~w~gv~C~~~~~~~~~~~lp~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~ 137 (1079)
|.++.|.|+...+..+|..+| ++++.|+|++|++++..+..|+++++|++|+|++|.+.+..|..+++++
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~----------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 73 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLP----------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSC----------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT
T ss_pred EECCEEECCCCCCCCCCCCCC----------CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 678744877798052641248----------8876888989977875978871787675887889964856977874066
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 44477514886654676432263445548535544567788000024568998809999755689922136432567630
Q 001426 138 ELELLSLNSNSIHGGIPREIGNCSKLRRLELYDNQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGL 217 (1079)
Q Consensus 138 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 217 (1079)
+|++|+|++|.+.+..+..|+++++|++|++++|.+++..|..++.+++|++|++++|. +.+..+..++++++|+.|++
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEEC
T ss_conf 76888899985675685453038888989898996685396674156788889898995-24667211124556777974
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC---CCCCCCEEECCCC
Q ss_conf 26788667884300--123433102333322355773123656565420534435357996735---8877776863376
Q 001426 218 ADTGISGQIPRSVG--ELTNLRTLSVYTANITGYIPEEIGNCSALENLFLYENQIFGKIPDELG---SLKNLKRLLLWQN 292 (1079)
Q Consensus 218 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n 292 (1079)
++|.+++..+..+. .+++|+.|++++|.+.+..|..+..+.+|+.|++.++.+.......+. ..++|+.|++++|
T Consensus 153 ~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 58843652978862446663217988898256558155532234455430566468056777877753151008874577
Q ss_pred CCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 568986753336787--638980354456766411122123340102364344434511136566767412687343338
Q 001426 293 NLSGSIPEALGNCSS--LTVIDVSLNSLGGEVPVSLANLVALEELLLSGNNISGEIPSFFGNFSRLKQLELDNNRFFGQI 370 (1079)
Q Consensus 293 ~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 370 (1079)
.+.+..+..+..++. |+.|++++|++.+..+..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|...+.+
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCC
T ss_conf 43646866751467677888778788767568021167410568557788567658656267888557736331321333
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q ss_conf 832146246999874047665567852113667289665777889965412252123421122330016--578765599
Q 001426 371 PPTIGQLKELLLFFAWQNQLHGNIPELAYCVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISNRFSG--EIPPEIGGC 448 (1079)
Q Consensus 371 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~l 448 (1079)
+. ..++. -....+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .....+..+
T Consensus 313 ~~--~~lp~------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 313 SL--ASLPK------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp ------CCE------------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred CC--CCCCC------------CCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCC
T ss_conf 33--55454------------38656246777888879898268788557406568728988798014432353220245
Q ss_pred --CCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCC
Q ss_conf --983399922797656685323534644865512576568889-98898775667846899576568824453047880
Q 001426 449 --TGLIRLRLGSNNFSGHIPSRIGLLHRLTFLELSENQFTGEIP-PEIGNCTQLEMVDLHQNKLQGTIPSSLEFLFGLNV 525 (1079)
Q Consensus 449 --~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 525 (1079)
++|+.|++++|+++++.+..+..+++|+.|++++|.+++.+| ..|.++++|+.|++++|++.+..+..|..+++|+.
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCC
T ss_conf 56867668899997776775442077888888677875754357553257546127844899754227645500754310
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH--------HHHHCCCCH
Q ss_conf 210154234--6656323467888637613650247787754534555312454752557881--------544101000
Q 001426 526 LDLSMNSIG--GTIPENLGKLTSLNKLVLSKNNITGLIPKSLGLCKDLQLLDLSSNRINGSIP--------EEIGRLQGL 595 (1079)
Q Consensus 526 L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L 595 (1079)
|++++|.+. +..|..|..+++|+.|++++|+++++.+..|..+++|+.|++++|++++..+ ..|..+.+|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCC
T ss_conf 11014644225667764555787899989999877679446345534688858899730000000467741423379988
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 43340568744466111134788664783567514664444-5854655300025885867789976--66989987666
Q 001426 596 DILLNLSWNALTGPIPESFSNLSKLANLDLSNNMLTGSLKV-LGSLDNLVSLNVSYNHFSGILPNTK--LFHGLPASAFY 672 (1079)
Q Consensus 596 ~~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~ls~N~l~~~~~~~~--~~~~~~~~~~~ 672 (1079)
..|++++|.++.+.+..|..+++|+.|++++|.++..++. +..+++|+.|++++|.++++.+..- .+..+....+.
T Consensus 539 -~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 539 -HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp -CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred -CEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECC
T ss_conf -8888999978877977734666752238999977767976837898888898999968705966830114665779831
Q ss_pred CCCCCCCC
Q ss_conf 89768558
Q 001426 673 GNQQLCVN 680 (1079)
Q Consensus 673 ~n~~~c~~ 680 (1079)
+|++.|..
T Consensus 618 ~N~~~c~c 625 (680)
T 1ziw_A 618 FNPFDCTC 625 (680)
T ss_dssp TCCCCBCC
T ss_pred CCCCCCCC
T ss_conf 89702577
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=522.29 Aligned_cols=554 Identities=24% Similarity=0.226 Sum_probs=469.8
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 76234667752399838995555597231255888889636986448998644876744477514886654676432263
Q 001426 81 FPYQLLSFSHLTSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPEEIGKLAELELLSLNSNSIHGGIPREIGNC 160 (1079)
Q Consensus 81 ~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 160 (1079)
.+..+..++++++|+|++|.+++..|..++++++|++|+|++|.+++..+..|+++++|++|++++|.+.+..|..|+++
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf 97887178767588788996485697787406676888899985675685453038888989898996685396674156
Q ss_pred CCCCEEECCCCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44554853554456778800002456899880999975568992213--6432567630267886678843001234331
Q 001426 161 SKLRRLELYDNQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEIS--NCKVLVFLGLADTGISGQIPRSVGELTNLRT 238 (1079)
Q Consensus 161 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 238 (1079)
++|++|++++|.+++..|..++++++|++|++++|. +.+..+..+. .++.|+.|++++|.+.+..+..+..+++|+.
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 788889898995246672111245567779745884-3652978862446663217988898256558155532234455
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 02333322355773123---6565654205344353579967358877--776863376568986753336787638980
Q 001426 239 LSVYTANITGYIPEEIG---NCSALENLFLYENQIFGKIPDELGSLKN--LKRLLLWQNNLSGSIPEALGNCSSLTVIDV 313 (1079)
Q Consensus 239 L~l~~~~~~~~~p~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 313 (1079)
|++.++.+.......+. ..++|+.|++++|.+.+..+..+..++. |+.|++++|.+.+..+..+..+++|+.|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 43056646805677787775315100887457743646866751467677888778788767568021167410568557
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCC---------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 3544567664111221233401023643444---------3451113656676741268734333883214624699987
Q 001426 314 SLNSLGGEVPVSLANLVALEELLLSGNNISG---------EIPSFFGNFSRLKQLELDNNRFFGQIPPTIGQLKELLLFF 384 (1079)
Q Consensus 314 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 384 (1079)
++|++.+..+..+..+++|+.|++++|...+ .....|..+++|+.|++++|++.+..+..+..+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------- 352 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL------- 352 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-------
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCC-------
T ss_conf 7885676586562678885577363313213333355454386562467778888798982687885574065-------
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 40476655678521136672896657778899--65412252--123421122330016578765599983399922797
Q 001426 385 AWQNQLHGNIPELAYCVKLQALDLSHNFLTGS--VPSSLFNL--KNLTQLLLISNRFSGEIPPEIGGCTGLIRLRLGSNN 460 (1079)
Q Consensus 385 l~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~l--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 460 (1079)
++|++|++++|.+... ....|..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 353 ----------------~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 353 ----------------INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp ----------------TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ----------------CCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCC
T ss_conf ----------------6872898879801443235322024556867668899997776775442077888888677875
Q ss_pred CCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 656685-32353464486551257656888998898775667846899576--568824453047880210154234665
Q 001426 461 FSGHIP-SRIGLLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQ--GTIPSSLEFLFGLNVLDLSMNSIGGTI 537 (1079)
Q Consensus 461 l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 537 (1079)
+++..+ ..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|+++++.
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 75435755325754612784489975422764550075431011014644225667764555787899989999877679
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf 6323467888637613650247787--------75453455531245475255788154410100043340568744466
Q 001426 538 PENLGKLTSLNKLVLSKNNITGLIP--------KSLGLCKDLQLLDLSSNRINGSIPEEIGRLQGLDILLNLSWNALTGP 609 (1079)
Q Consensus 538 ~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~l~l~~N~l~~~ 609 (1079)
+..|..+++|++|++++|+++++.+ ..|..+++|+.|++++|+++.+.+..|.++.+| ..+++++|.++++
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-KIIDLGLNNLNTL 575 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCC
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCC-CEEECCCCCCCCC
T ss_conf 446345534688858899730000000467741423379988888899997887797773466675-2238999977767
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCC-CC-CCCCCCEEECCCCCCCCCCCC
Q ss_conf 111134788664783567514664444-58-546553000258858677899
Q 001426 610 IPESFSNLSKLANLDLSNNMLTGSLKV-LG-SLDNLVSLNVSYNHFSGILPN 659 (1079)
Q Consensus 610 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~-l~-~l~~L~~L~ls~N~l~~~~~~ 659 (1079)
.+..|..+++|+.|++++|+++..++. +. .+++|+.+++++|++.+.++.
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 9768378988888989999687059668301146657798318970257766
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=489.09 Aligned_cols=534 Identities=21% Similarity=0.189 Sum_probs=350.0
Q ss_pred CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 32123117960587134588876234667752399838995555597231255888889636986448998644876744
Q 001426 60 WDYIKCSRTEIAITSIHIPTSFPYQLLSFSHLTSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPEEIGKLAEL 139 (1079)
Q Consensus 60 w~gv~C~~~~~~~~~~~lp~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L 139 (1079)
+..|.|+..++...|..+| ..++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|+++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~----------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP----------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC----------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCEEECCCCCCCCCCCCCC----------CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCC
T ss_conf 7237777798062867789----------867589815873471796672567665289788983552485113684336
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 47751488665467643226344554853554456778800002456899880999975568992213643256763026
Q 001426 140 ELLSLNSNSIHGGIPREIGNCSKLRRLELYDNQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGLAD 219 (1079)
Q Consensus 140 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 219 (1079)
++|+|++|.+.+..|..|+++++|++|++++|.+++..+..++ ++++|++|++++
T Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~-------------------------~l~~L~~L~L~~ 138 (606)
T 3t6q_A 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-------------------------NQKTLESLYLGS 138 (606)
T ss_dssp CEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT-------------------------TCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHC-------------------------CCCCCCEEECCC
T ss_conf 7644889856545865523442153765212676657810122-------------------------378223898879
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 788667884300123433102333322355773123656565--420534435357996735887777686337656898
Q 001426 220 TGISGQIPRSVGELTNLRTLSVYTANITGYIPEEIGNCSALE--NLFLYENQIFGKIPDELGSLKNLKRLLLWQNNLSGS 297 (1079)
Q Consensus 220 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 297 (1079)
|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.+..+..+.. .+|+.|++++|. .
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~ 214 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---N 214 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---C
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---H
T ss_conf 834114765456876568777656844554965633221564038966798147548667300-100135567726---6
Q ss_pred CCCCCCCCCCCCEEECCCCCCC-----CCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 6753336787638980354456-----76641112212--3340102364344434511136566767412687343338
Q 001426 298 IPEALGNCSSLTVIDVSLNSLG-----GEVPVSLANLV--ALEELLLSGNNISGEIPSFFGNFSRLKQLELDNNRFFGQI 370 (1079)
Q Consensus 298 ~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 370 (1079)
.+..+..+..+....+..+.+. ...+..+..+. +|+.|++++|.+.+..+..|..+++|+.|++++|++. .+
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CC
T ss_conf 77776513356442200201102641226866743032075059994457658557777445667888956288267-77
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 832146246999874047665567852113667289665777889965412252123421122330016578-7655999
Q 001426 371 PPTIGQLKELLLFFAWQNQLHGNIPELAYCVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISNRFSGEIP-PEIGGCT 449 (1079)
Q Consensus 371 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~l~ 449 (1079)
|..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..++
T Consensus 294 p~~l~~l-----------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 294 PSGLVGL-----------------------STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp CSSCCSC-----------------------TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred CHHHCCC-----------------------CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCC
T ss_conf 8214165-----------------------46888977168768676023301576898889899744434624550667
Q ss_pred CCEEEEECCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHHHCCCCCC
Q ss_conf 8339992279765668--5323534644865512576568889988987756678468995765688-244530478802
Q 001426 450 GLIRLRLGSNNFSGHI--PSRIGLLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTIP-SSLEFLFGLNVL 526 (1079)
Q Consensus 450 ~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L 526 (1079)
+|++|++++|.+++.. +..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++.+..+ ..+..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 58988788996664567522105678889898989967757888734774577687888867775652124176558889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCC
Q ss_conf 1015423466563234678886376136502477---8775453455531245475255788154410100043340568
Q 001426 527 DLSMNSIGGTIPENLGKLTSLNKLVLSKNNITGL---IPKSLGLCKDLQLLDLSSNRINGSIPEEIGRLQGLDILLNLSW 603 (1079)
Q Consensus 527 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~l~l~~ 603 (1079)
++++|.+.+..+..|..+++|++|++++|++++. .+..+..+++|+.|++++|++++..|..|..+++| ..|++++
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~ 509 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-NHVDLSH 509 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCS
T ss_pred ECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-CEEECCC
T ss_conf 898985577687787378878889898998885434543124048876688799996670686463265678-8898989
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCC
Q ss_conf 744466111134788664783567514664444-5854655300025885867789
Q 001426 604 NALTGPIPESFSNLSKLANLDLSNNMLTGSLKV-LGSLDNLVSLNVSYNHFSGILP 658 (1079)
Q Consensus 604 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~ls~N~l~~~~~ 658 (1079)
|.+++..|..|..++.| .|++++|.+++.++. +..+++|+.+++++|++.+.++
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 80686896684756651-89876894142687662567787889677998616677
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=481.14 Aligned_cols=531 Identities=21% Similarity=0.194 Sum_probs=407.0
Q ss_pred CCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCC
Q ss_conf 63212311796058713458887623466775239983899555559723125588888963698644899-86448767
Q 001426 59 NWDYIKCSRTEIAITSIHIPTSFPYQLLSFSHLTSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNI-PEEIGKLA 137 (1079)
Q Consensus 59 ~w~gv~C~~~~~~~~~~~lp~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~ 137 (1079)
.-..+.|+...+..+|. +| +.++.|+|++|.+++..+.+|.++++|++|+|++|...+.+ |..|++++
T Consensus 5 ~~~~~dcs~~~L~~vP~-lp----------~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 5 DGRIAFYRFCNLTQVPQ-VL----------NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp TTEEEEESCCCSSCCCS-SC----------TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred ECEEEECCCCCCCCCCC-CC----------CCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCC
T ss_conf 66489823799777898-99----------98688888778678329667766213708867899774441977853787
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 44477514886654676432263445548535544567788000024568998809999755689922136432567630
Q 001426 138 ELELLSLNSNSIHGGIPREIGNCSKLRRLELYDNQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGL 217 (1079)
Q Consensus 138 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 217 (1079)
+|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|.. ..++++++|+.|++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------------------~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-----------------------GYFRNLKALTRLDL 130 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT-----------------------CCCSSCSSCCEEEE
T ss_pred CCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCC-----------------------CCCCCCCCCCEEEC
T ss_conf 7888879899585319767157866587017678897340467-----------------------64556679998889
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCC------CCEEE
Q ss_conf 2678866788-430012343310233332235577312365--65654205344353579967358877------77686
Q 001426 218 ADTGISGQIP-RSVGELTNLRTLSVYTANITGYIPEEIGNC--SALENLFLYENQIFGKIPDELGSLKN------LKRLL 288 (1079)
Q Consensus 218 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~ 288 (1079)
++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|+++.|.+.+..+..+..+.+ |+.|+
T Consensus 131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 210 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210 (844)
T ss_dssp ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB
T ss_pred CCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
T ss_conf 87864232566557638898989898984776678875355677503578978866655455332237722357400796
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCEEECCC---------CCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 33765689867533367---8763898035---------44567664111221--2334010236434443451113656
Q 001426 289 LWQNNLSGSIPEALGNC---SSLTVIDVSL---------NSLGGEVPVSLANL--VALEELLLSGNNISGEIPSFFGNFS 354 (1079)
Q Consensus 289 L~~n~l~~~~~~~l~~l---~~L~~L~Ls~---------n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~ 354 (1079)
+++|.+.+..+..+... .+++.+.++. +.+.+.....|..+ ++|+.|++++|.+.+..+..|..++
T Consensus 211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 57886865677888764274410011212122346644456688985565255547861898979945515863452589
Q ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67674126873433388321462469998740476655678521136672896657778899654122521234211223
Q 001426 355 RLKQLELDNNRFFGQIPPTIGQLKELLLFFAWQNQLHGNIPELAYCVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLIS 434 (1079)
Q Consensus 355 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 434 (1079)
+|+.|++++|++.+..+..|..+ ++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGL-----------------------DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTC-----------------------SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCCCHHHHCCC-----------------------CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 99999897981898796883688-----------------------8999898989978851878846899999898989
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 30016578765599983399922797656685323534644865512576568889988987756678468995765688
Q 001426 435 NRFSGEIPPEIGGCTGLIRLRLGSNNFSGHIPSRIGLLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTIP 514 (1079)
Q Consensus 435 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~ 514 (1079)
|.++...+..|..+++|+.|++++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|++++|++.+...
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTT
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCH
T ss_conf 9877628666137888999889899778616-----8898232005899723-14554---5543122145675345755
Q ss_pred -HHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf -2445304788021015423466563-2346788863761365024-----77877545345553124547525578815
Q 001426 515 -SSLEFLFGLNVLDLSMNSIGGTIPE-NLGKLTSLNKLVLSKNNIT-----GLIPKSLGLCKDLQLLDLSSNRINGSIPE 587 (1079)
Q Consensus 515 -~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 587 (1079)
..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|.+++..|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 66651277666666778712555543335668731002477773644101355355544755365777889856553955
Q ss_pred HHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 4410100043340568744466111134788664783567514664444585465530002588586778997
Q 001426 588 EIGRLQGLDILLNLSWNALTGPIPESFSNLSKLANLDLSNNMLTGSLKVLGSLDNLVSLNVSYNHFSGILPNT 660 (1079)
Q Consensus 588 ~~~~l~~L~~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~ 660 (1079)
.|..+.+| ..|++++|.++++.+..+. ++|+.|++++|++++.++.. +.+|+.+++++|++.+.++..
T Consensus 499 ~~~~l~~L-~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 499 VFSHLTAL-RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp SSSSCCSC-SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred HCCCHHHH-HEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCCH
T ss_conf 70450122-1569999978745710110--04558889888478889668--377688993199702536618
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=480.25 Aligned_cols=531 Identities=23% Similarity=0.242 Sum_probs=441.6
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 23998389955555972312558888896369864489986448767444775148866546764322634455485355
Q 001426 91 LTSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPEEIGKLAELELLSLNSNSIHGGIPREIGNCSKLRRLELYD 170 (1079)
Q Consensus 91 l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 170 (1079)
-+.++.++.+++ .+|..+. ..+++|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|+++++|++|+|++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCC
T ss_conf 723777779806-2867789--8675898158734717966725676652897889835524851136843367644889
Q ss_pred CCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44567788000024568998809999755689922136432567630267886678843001234331023333223557
Q 001426 171 NQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGLADTGISGQIPRSVGELTNLRTLSVYTANITGYI 250 (1079)
Q Consensus 171 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 250 (1079)
|.+++..|.. +++++.|++|++++|.+++..+..++++++|++|++++|.+.+..
T Consensus 91 n~l~~~~~~~-------------------------~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (606)
T 3t6q_A 91 NPLIFMAETA-------------------------LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145 (606)
T ss_dssp CCCSEECTTT-------------------------TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCCHHH-------------------------HCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCC
T ss_conf 8565458655-------------------------234421537652126766578101223782238988798341147
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 73123656565420534435357996735887777--6863376568986753336787638980354456766411122
Q 001426 251 PEEIGNCSALENLFLYENQIFGKIPDELGSLKNLK--RLLLWQNNLSGSIPEALGNCSSLTVIDVSLNSLGGEVPVSLAN 328 (1079)
Q Consensus 251 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 328 (1079)
...+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.+.+..+..+.. .+|+.+++++|. ..+..+..
T Consensus 146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~ 221 (606)
T 3t6q_A 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG 221 (606)
T ss_dssp CCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHH
T ss_conf 65456876568777656844554965633221564038966798147548667300-100135567726---67777651
Q ss_pred CCCCCEEECCCCCC-----CCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 12334010236434-----443451113656--67674126873433388321462469998740476655678521136
Q 001426 329 LVALEELLLSGNNI-----SGEIPSFFGNFS--RLKQLELDNNRFFGQIPPTIGQLKELLLFFAWQNQLHGNIPELAYCV 401 (1079)
Q Consensus 329 l~~L~~L~Ls~n~l-----~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 401 (1079)
+..+....+..+.+ ....+..+.++. +|+.|++++|.+.+..+..+..+ +
T Consensus 222 l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l-----------------------~ 278 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF-----------------------S 278 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC-----------------------T
T ss_pred CCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCC-----------------------C
T ss_conf 33564422002011026412268667430320750599944576585577774456-----------------------6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCEEEE
Q ss_conf 67289665777889965412252123421122330016578765599983399922797656685-32353464486551
Q 001426 402 KLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISNRFSGEIPPEIGGCTGLIRLRLGSNNFSGHIP-SRIGLLHRLTFLEL 480 (1079)
Q Consensus 402 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l 480 (1079)
+|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 7888956288267-778214165468889771687686760233015768988898997444346245506675898878
Q ss_pred CCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCC
Q ss_conf 257656888--99889877566784689957656882445304788021015423466563-234678886376136502
Q 001426 481 SENQFTGEI--PPEIGNCTQLEMVDLHQNKLQGTIPSSLEFLFGLNVLDLSMNSIGGTIPE-NLGKLTSLNKLVLSKNNI 557 (1079)
Q Consensus 481 s~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l 557 (1079)
++|.+++.. +..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++.+..+. .|..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 89966645675221056788898989899677578887347745776878888677756521241765588898989855
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 477877545345553124547525578---81544101000433405687444661111347886647835675146644
Q 001426 558 TGLIPKSLGLCKDLQLLDLSSNRINGS---IPEEIGRLQGLDILLNLSWNALTGPIPESFSNLSKLANLDLSNNMLTGSL 634 (1079)
Q Consensus 558 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 634 (1079)
.+..+..+..+++|+.|++++|++++. .+..+..+.+| ..|++++|.++++.|..|..+++|+.|++++|++++..
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCC-CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 77687787378878889898998885434543124048876-68879999667068646326567888989898068689
Q ss_pred C-CCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 4-4585465530002588586778997-6669899876668976855
Q 001426 635 K-VLGSLDNLVSLNVSYNHFSGILPNT-KLFHGLPASAFYGNQQLCV 679 (1079)
Q Consensus 635 ~-~l~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~~~~~~~~n~~~c~ 679 (1079)
+ .+..++.| .|++++|.+++.+|.. ..+..+....+.+|++.|.
T Consensus 517 ~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred HHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 6684756651-898768941426876625677878896779986166
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=475.17 Aligned_cols=538 Identities=24% Similarity=0.215 Sum_probs=418.4
Q ss_pred CCCCCC----CEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 999963----2123117960587134588876234667752399838995555597231255888889636986448998
Q 001426 55 RNPCNW----DYIKCSRTEIAITSIHIPTSFPYQLLSFSHLTSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIP 130 (1079)
Q Consensus 55 ~~~C~w----~gv~C~~~~~~~~~~~lp~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p 130 (1079)
.++|.| ..|.|+..++...|..+| ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|
T Consensus 4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~----------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~ 73 (606)
T 3vq2_A 4 LNPCIEVVPNITYQCMDQKLSKVPDDIP----------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73 (606)
T ss_dssp --CCEEEETTTEEECTTSCCSSCCTTSC----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCEECCCCCCEECCCCCCCCCCCCCC----------CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf 7775321789705746888451898888----------876788788897577375455577667488688773664397
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 64487674447751488665467643226344554853554456778800002456899880999975568992213643
Q 001426 131 EEIGKLAELELLSLNSNSIHGGIPREIGNCSKLRRLELYDNQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCK 210 (1079)
Q Consensus 131 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 210 (1079)
..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+++..+..++. ++
T Consensus 74 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------l~ 128 (606)
T 3vq2_A 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-------------------------LI 128 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTT-------------------------CT
T ss_pred HHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCC-------------------------CC
T ss_conf 77306010688678798563048522078653788870377555445113489-------------------------88
Q ss_pred CEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----EECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25676302678866-7884300123433102333322355773123656565----420534435357996735887777
Q 001426 211 VLVFLGLADTGISG-QIPRSVGELTNLRTLSVYTANITGYIPEEIGNCSALE----NLFLYENQIFGKIPDELGSLKNLK 285 (1079)
Q Consensus 211 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~ 285 (1079)
.|+.|++++|.+.+ .+|..++++++|++|++++|.+.+..+..++.+++|+ .|++++|.+....+..+... +|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred CCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEE
T ss_conf 7798968788523253068673267777887668853105733412120342002430046897532571105676-043
Q ss_pred EEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCC------CCCCCCCCC--CCCEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 6863376568-98675333678763898035445676------641112212--3340102-364344434511136566
Q 001426 286 RLLLWQNNLS-GSIPEALGNCSSLTVIDVSLNSLGGE------VPVSLANLV--ALEELLL-SGNNISGEIPSFFGNFSR 355 (1079)
Q Consensus 286 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~--~L~~L~L-s~n~l~~~~~~~~~~l~~ 355 (1079)
.|++++|.+. +..+..+.+++.|+.+++..+.+... .+..+..+. .++.+++ ..|.+.+..+. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCC
T ss_conf 3524678561667788860266565231411110367741026817766665434745012366555543222-354887
Q ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76741268734333883214624699987404766556785211366728966577788996541225212342112233
Q 001426 356 LKQLELDNNRFFGQIPPTIGQLKELLLFFAWQNQLHGNIPELAYCVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISN 435 (1079)
Q Consensus 356 L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N 435 (1079)
|+.|++++|.+.. ++ . +..+++|++|++++|.+. .+| .+ .+++|+.|++++|
T Consensus 287 L~~L~l~~~~~~~-l~-~-----------------------l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 287 VSAMSLAGVSIKY-LE-D-----------------------VPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp CSEEEEESCCCCC-CC-C-----------------------CCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESC
T ss_pred CCEEEECCCCCHH-HH-H-----------------------CCCCCCCCEEECCCCCCC-CCC-CC-CCCCCCEEECCCC
T ss_conf 8987714766044-35-4-----------------------334011778976466676-546-67-8875564454478
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 00165787655999833999227976566--8532353464486551257656888998898775667846899576568
Q 001426 436 RFSGEIPPEIGGCTGLIRLRLGSNNFSGH--IPSRIGLLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTI 513 (1079)
Q Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 513 (1079)
...+.. .+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.++ ..|..+..+++|+.|++++|++.+..
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTT
T ss_pred CCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 685310--002489888797758736877520122146775548678899530-00554068888896589887058753
Q ss_pred C-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 8-244530478802101542346656323467888637613650247-78775453455531245475255788154410
Q 001426 514 P-SSLEFLFGLNVLDLSMNSIGGTIPENLGKLTSLNKLVLSKNNITG-LIPKSLGLCKDLQLLDLSSNRINGSIPEEIGR 591 (1079)
Q Consensus 514 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 591 (1079)
+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++|++++ ..|..+..+++|+.|++++|++++..|..|..
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 495 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 76456462137889896897874335553477878989898983798546776045788998989888577648656154
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCC
Q ss_conf 10004334056874446611113478866478356751466444458546-55300025885867789976
Q 001426 592 LQGLDILLNLSWNALTGPIPESFSNLSKLANLDLSNNMLTGSLKVLGSLD-NLVSLNVSYNHFSGILPNTK 661 (1079)
Q Consensus 592 l~~L~~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~-~L~~L~ls~N~l~~~~~~~~ 661 (1079)
+++| ..|++++|.+++..|..|..+++|+.|++++|+++..++.+..++ +|+.+++++|++.+.++...
T Consensus 496 l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 496 LHRL-QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CTTC-CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CCCC-CEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHH
T ss_conf 6468-989898995787487770688768988898983766687675210217488762898664776489
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=472.18 Aligned_cols=518 Identities=18% Similarity=0.239 Sum_probs=345.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCC---CEEEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 124910589998775177899985-------545889999999963---2123117960587134588876234667752
Q 001426 22 SALNPEGLSLLSWLSTFNSSSSAT-------FFSSWNPSHRNPCNW---DYIKCSRTEIAITSIHIPTSFPYQLLSFSHL 91 (1079)
Q Consensus 22 ~~~~~~~~~ll~~~~~~~~~~~~~-------~l~~W~~~~~~~C~w---~gv~C~~~~~~~~~~~lp~~~~~~~~~~~~l 91 (1079)
+....|+.||.+++.+.... ... ..++|+. +.|||.| .||+|+.. +++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~-~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~~--------------------~~V 83 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGK-NWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSN--------------------GRV 83 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-GCCCCC------CCCCC-SSCGGGTTCCTTEEECTT--------------------CCE
T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCC--------------------CCE
T ss_conf 66778899999999975899-74547767765788777-998000147798487678--------------------978
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 39983899555559723125588888963698644899864487674447751488665467643226344554853554
Q 001426 92 TSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPEEIGKLAELELLSLNSNSIHGGIPREIGNCSKLRRLELYDN 171 (1079)
Q Consensus 92 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 171 (1079)
+.|+|+++++.|.+|+++++|++|++|+|++|.+. ..+..++... +...+|... +..|+ ++++.|
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~-~~~~~~~~~~-----------~~~~~~~~~--~~~l~-l~l~~~ 148 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKG-----------ISANMSDEQ--KQKMR-MHYQKT 148 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGG-GTCCSBSTTS-----------BCTTCCHHH--HHHHH-THHHHH
T ss_pred EEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCC-CCCCCCCCCC-----------CCCCCHHHH--HHHHH-HHHHHH
T ss_conf 89984276657728857856845118987688512-3774334532-----------356733888--88887-657775
Q ss_pred CCCCCCCHHHCH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 456778800002-45689988099997556899221364325676302678866788430012343310233--332235
Q 001426 172 QLSGNIPAEIGQ-LEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGLADTGISGQIPRSVGELTNLRTLSVY--TANITG 248 (1079)
Q Consensus 172 ~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~~~ 248 (1079)
.+.+.+|..++. +..+..+++...... ......++.+.+. .|.+++
T Consensus 149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~-------------------------------~~~~~~l~~l~l~~~~n~l~~ 197 (636)
T 4eco_A 149 FVDYDPREDFSDLIKDCINSDPQQKSIK-------------------------------KSSRITLKDTQIGQLSNNITF 197 (636)
T ss_dssp HTCCCGGGGSCHHHHHHHHHCTTSCCCC-------------------------------CCCCCCCCTTTTTCCSCEEEE
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCC-------------------------------CCCCCCHHHHHHCCCCCCCCC
T ss_conf 5411706667788777764275546541-------------------------------013344213001013677750
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCC-----------------CCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5773123656565420534435357-----------------996735--887777686337656898675333678763
Q 001426 249 YIPEEIGNCSALENLFLYENQIFGK-----------------IPDELG--SLKNLKRLLLWQNNLSGSIPEALGNCSSLT 309 (1079)
Q Consensus 249 ~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 309 (1079)
+|..++++++|++|+|++|.+++. +|..+. .+++|++|++++|.+.+.+|..+.++++|+
T Consensus 198 -ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp -ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred -CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCC
T ss_conf -7877725647878988688236642322122222100102486322004468788898048857762838883499978
Q ss_pred EEECCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 89803544-567-664111221------2334010236434443451--1136566767412687343338832146246
Q 001426 310 VIDVSLNS-LGG-EVPVSLANL------VALEELLLSGNNISGEIPS--FFGNFSRLKQLELDNNRFFGQIPPTIGQLKE 379 (1079)
Q Consensus 310 ~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 379 (1079)
.|++++|+ +++ .+|..+..+ ++|+.|++++|.++ .+|. .+.++++|+.|++++|++.+.+| .+..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l-- 352 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE-- 352 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--
T ss_pred EEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCC--
T ss_conf 897847988766533578875430465788888989799377-66765554257888989690880705166-64788--
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCEEEEE
Q ss_conf 99987404766556785211366728966577788996541225212-34211223300165787655999--8339992
Q 001426 380 LLLFFAWQNQLHGNIPELAYCVKLQALDLSHNFLTGSVPSSLFNLKN-LTQLLLISNRFSGEIPPEIGGCT--GLIRLRL 456 (1079)
Q Consensus 380 L~~l~l~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~L 456 (1079)
++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++
T Consensus 353 ---------------------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 353 ---------------------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp ---------------------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred ---------------------CCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEEC
T ss_conf ---------------------98898989899403-033756510236868985298275-4466553334576688977
Q ss_pred CCCCCCCCCCCCCC-------CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHC-------C
Q ss_conf 27976566853235-------346448655125765688899889877566784689957656882445304-------7
Q 001426 457 GSNNFSGHIPSRIG-------LLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTIPSSLEFLF-------G 522 (1079)
Q Consensus 457 ~~N~l~~~~~~~~~-------~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-------~ 522 (1079)
++|.+++..|..+. .+++|+.|++++|.++...+..+..+++|+.|++++|++..+.+..+.... +
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 48857886524420022011258988889772796686787887158988989897997887397884044001221477
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHC
Q ss_conf 88021015423466563234--6788863761365024778775453455531245475255788154410100043340
Q 001426 523 LNVLDLSMNSIGGTIPENLG--KLTSLNKLVLSKNNITGLIPKSLGLCKDLQLLDLSSNRINGSIPEEIGRLQGLDILLN 600 (1079)
Q Consensus 523 L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~l~ 600 (1079)
|+.|++++|+++ .+|..+. .+++|+.|++++|++++ .|..+..+++|+.|++++|+ +
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~-------------------~ 548 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR-------------------D 548 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-------------------C
T ss_pred CCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCC-------------------C
T ss_conf 338989699388-16854534458876989898998877-68235308887878898886-------------------6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 5687444661111347886647835675146644445854655300025885867789
Q 001426 601 LSWNALTGPIPESFSNLSKLANLDLSNNMLTGSLKVLGSLDNLVSLNVSYNHFSGILP 658 (1079)
Q Consensus 601 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 658 (1079)
+++|.+.+.+|..+..+++|+.|++++|.+...+..+. ++|+.|++++|++..+..
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHH--CCCCEEECCCCCCCCCCH
T ss_conf 56673121273778569987889898994770597683--867899876998763367
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=470.52 Aligned_cols=522 Identities=24% Similarity=0.264 Sum_probs=306.3
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf 39983899555559723125588888963698644899864487674447751488665467-64322634455485355
Q 001426 92 TSLVLSNANLTGEIPPAIGNLSSLINLDLSFNALTGNIPEEIGKLAELELLSLNSNSIHGGI-PREIGNCSKLRRLELYD 170 (1079)
Q Consensus 92 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~ 170 (1079)
...+.++++++ .+|. ..++|++|+|++|.+++..|..|+++++|++|+|++|...+.+ |..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEECCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 48982379977-7898---9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 44567788000024568998809999755689922136432567630267886678843--0012343310233332235
Q 001426 171 NQLSGNIPAEIGQLEALEIIRAGGNPGIHGEIPEEISNCKVLVFLGLADTGISGQIPRS--VGELTNLRTLSVYTANITG 248 (1079)
Q Consensus 171 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~ 248 (1079)
|.+++..|.. ++++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+
T Consensus 83 N~l~~~~p~~-------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 83 SKIYFLHPDA-------------------------FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp CCCCEECTTS-------------------------SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred CCCCCCCHHH-------------------------CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 9585319767-------------------------157866587017678897340467645566799988898786423
Q ss_pred CCC-CCCCCCCCCCEECCCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCC
Q ss_conf 577-312365656542053443535799673588--77776863376568986753336787------638980354456
Q 001426 249 YIP-EEIGNCSALENLFLYENQIFGKIPDELGSL--KNLKRLLLWQNNLSGSIPEALGNCSS------LTVIDVSLNSLG 319 (1079)
Q Consensus 249 ~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~ 319 (1079)
..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.
T Consensus 138 ~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred CCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 25665576388989898989847766788753556775035789788666554553322377223574007965788686
Q ss_pred CCCCCCCCCC---CCCCEEECCC---------CCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7664111221---2334010236---------43444345111365--66767412687343338832146246999874
Q 001426 320 GEVPVSLANL---VALEELLLSG---------NNISGEIPSFFGNF--SRLKQLELDNNRFFGQIPPTIGQLKELLLFFA 385 (1079)
Q Consensus 320 ~~~~~~~~~l---~~L~~L~Ls~---------n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l 385 (1079)
+..+..+... .+++.+.++. +.+.......|.++ ++|+.|++++|.+.+..+..+..+
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-------- 289 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-------- 289 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC--------
T ss_pred HHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCC--------
T ss_conf 567788876427441001121212234664445668898556525554786189897994551586345258--------
Q ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 04766556785211366728966577788996541225212342112233001657876559998339992279765668
Q 001426 386 WQNQLHGNIPELAYCVKLQALDLSHNFLTGSVPSSLFNLKNLTQLLLISNRFSGEIPPEIGGCTGLIRLRLGSNNFSGHI 465 (1079)
Q Consensus 386 ~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 465 (1079)
++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++.+.
T Consensus 290 ---------------~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 290 ---------------KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp ---------------CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred ---------------CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf ---------------99999989798189879688368889998989899788518788468999998989899877628
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 5323534644865512576568889988987756678468995765688244530478802101542346656-323467
Q 001426 466 PSRIGLLHRLTFLELSENQFTGEIPPEIGNCTQLEMVDLHQNKLQGTIPSSLEFLFGLNVLDLSMNSIGGTIP-ENLGKL 544 (1079)
Q Consensus 466 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l 544 (1079)
+..|..+++|+.|++++|.+++. + .+++|+.|++++|++... |.. ..+++.|++++|++.+... ..+..+
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred HHHHCCCCCCCEEECCCCCCCCC-C----CCCCCCHHCCCCCCCCCC-CCC---CCCCCEEECCCCCCCCCCHHHHHHCC
T ss_conf 66613788899988989977861-6----889823200589972314-554---55431221456753457556665127
Q ss_pred CCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-----CCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 8886376136502477877-5453455531245475255-----788154410100043340568744466111134788
Q 001426 545 TSLNKLVLSKNNITGLIPK-SLGLCKDLQLLDLSSNRIN-----GSIPEEIGRLQGLDILLNLSWNALTGPIPESFSNLS 618 (1079)
Q Consensus 545 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~l~l~~N~l~~~~~~~~~~l~ 618 (1079)
++|++|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+.+| ..|++++|.+++..+..|..++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL-QVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE-ECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-CEEECCCCCCCCCCHHHCCCHH
T ss_conf 766666677871255554333566873100247777364410135535554475536-5777889856553955704501
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 664783567514664444585465530002588586778997666989987666897685
Q 001426 619 KLANLDLSNNMLTGSLKVLGSLDNLVSLNVSYNHFSGILPNTKLFHGLPASAFYGNQQLC 678 (1079)
Q Consensus 619 ~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~n~~~c 678 (1079)
+|+.|+|++|++++.++.... ++|+.|++++|.++++.|. .+..+....+.+|++.|
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFIC 561 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCC
T ss_pred HHHEEECCCCCCCCCCHHHHH-CCCCEEECCCCCCCCCCHH--HHCCCCEEEECCCCCCC
T ss_conf 221569999978745710110-0455888988847888966--83776889931997025
Done!