BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001429
(1079 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 5/176 (2%)
Query: 118 DPSRHITSLTELCEVLSFXXXXXXXXXXXXXXXPVLVKLARHETNPDIMLLAVRAITYLC 177
D + + + T+ ++LS P V+ E P + A A+T +
Sbjct: 49 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 108
Query: 178 DIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA---CLEGGAIM 234
++ +++ H AVP + L + DV EQ + AL ++ D P L GA++
Sbjct: 109 SGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALL 167
Query: 235 AALTYIDFFST-SIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLV 289
L ++ + S+ R A T++N C+ P A+P L+ L+ D +++
Sbjct: 168 PLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVL 223
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 5/176 (2%)
Query: 118 DPSRHITSLTELCEVLSFXXXXXXXXXXXXXXXPVLVKLARHETNPDIMLLAVRAITYLC 177
D + + + T+ ++LS P V+ E P + A A+T +
Sbjct: 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146
Query: 178 DIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA---CLEGGAIM 234
++ +++ H AVP + L + DV EQ + AL ++ D P L GA++
Sbjct: 147 SGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALL 205
Query: 235 AALTYIDFFST-SIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLV 289
L ++ + S+ R A T++N C+ P A+P L+ L+ D +++
Sbjct: 206 PLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVL 261
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H+ +P+++ AI+YL D G++V+ VP L + L A E L +
Sbjct: 186 PTLVRLLHHD-DPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASE-LPIVT 243
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 244 PALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 295
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 221 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 278
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 279 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 330
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 235 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 292
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 254 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 311
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 363
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 235 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 292
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 235 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 292
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 185 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 242
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 243 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 294
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 191 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 248
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 249 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 300
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 211 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 268
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 269 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 320
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 219 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 276
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 277 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 328
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 185 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 242
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 243 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 293
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 180 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 237
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 238 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 288
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 185 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 242
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 243 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 293
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 184 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 241
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 242 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 292
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 184 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 241
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 242 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 292
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210
P LV+L H +P+++ + AI+YL D ++V+ VP L + L A E L +
Sbjct: 180 PTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT 237
Query: 211 QCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258
L+A+ I + +Q ++ GA+ + + T+IQ+ A T++NI
Sbjct: 238 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 288
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 133 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 190
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250
Query: 266 CPSHLMEAVPILSNLL 281
S + +A+P L+ L+
Sbjct: 251 DWSVVSQALPTLAKLI 266
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 46 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 103
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 104 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 163
Query: 266 CPSHLMEAVPILSNLL 281
S + +A+P L+ L+
Sbjct: 164 DWSVVSQALPTLAKLI 179
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 46 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 103
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 104 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 163
Query: 266 CPSHLMEAVPILSNLL 281
S + +A+P L+ L+
Sbjct: 164 DWSVVSQALPTLAKLI 179
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 47 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 104
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 105 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 164
Query: 266 CPSHLMEAVPILSNLL 281
S + +A+P L+ L+
Sbjct: 165 DWSVVSQALPTLAKLI 180
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 45 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 102
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 103 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 162
Query: 266 CPSHLMEAVPILSNLLQYEDRQ 287
S + +A+P L+ L+ D +
Sbjct: 163 DWSVVSQALPTLAKLIYSMDTE 184
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 45 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 102
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 103 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 162
Query: 266 CPSHLMEAVPILSNLLQYEDRQ 287
S + +A+P L+ L+ D +
Sbjct: 163 DWSVVSQALPTLAKLIYSMDTE 184
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 151 PVLVKLARHETNPDIMLL-AVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209
P LV+ R E P+++ L A A+T + + ++V DAVP Q L ++V
Sbjct: 47 PRLVEFMR-ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVK 104
Query: 210 EQCLQALEKI---SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK-KLPSE 265
EQ + AL + S D L+ A+ L + S+ R A T++N+C+ K P
Sbjct: 105 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 164
Query: 266 CPSHLMEAVPILSNLL 281
S + +A+P L+ L+
Sbjct: 165 DWSVVSQALPTLAKLI 180
>pdb|3PDI|A Chain A, Precursor Bound Nifen
pdb|3PDI|C Chain C, Precursor Bound Nifen
pdb|3PDI|E Chain E, Precursor Bound Nifen
pdb|3PDI|G Chain G, Precursor Bound Nifen
Length = 483
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 588 NLAKSIITKYFSPELFGSDKGLTDILQDLRSFSAALTDLMNVCTDNEAHARDEEKFYCIL 647
N+A+ + Y +P GS G+TD Q LR F+ L D AR+E K L
Sbjct: 264 NVARKLQETYGTPWFEGSFYGITDTSQALRDFARLLDDPDLTARTEALIAREEAKVRAAL 323
Query: 648 HQIMEKLNGR 657
+L G+
Sbjct: 324 EPWRARLEGK 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,365,671
Number of Sequences: 62578
Number of extensions: 1076887
Number of successful extensions: 2349
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2345
Number of HSP's gapped (non-prelim): 28
length of query: 1079
length of database: 14,973,337
effective HSP length: 109
effective length of query: 970
effective length of database: 8,152,335
effective search space: 7907764950
effective search space used: 7907764950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)