Query 001429
Match_columns 1079
No_of_seqs 378 out of 1381
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 00:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0168 Putative ubiquitin fus 100.0 8E-101 2E-105 888.6 50.2 806 1-814 34-1026(1051)
2 COG5064 SRP1 Karyopherin (impo 100.0 6.1E-67 1.3E-71 557.0 24.3 425 2-528 23-477 (526)
3 KOG0166 Karyopherin (importin) 100.0 7.5E-66 1.6E-70 591.7 30.7 425 2-530 20-469 (514)
4 KOG0166 Karyopherin (importin) 100.0 3.1E-34 6.7E-39 330.9 26.2 335 81-462 77-438 (514)
5 COG5064 SRP1 Karyopherin (impo 100.0 4.9E-34 1.1E-38 305.5 10.3 321 67-403 71-421 (526)
6 PLN03200 cellulose synthase-in 100.0 1.4E-29 2.9E-34 328.5 40.3 369 103-529 188-620 (2102)
7 PLN03200 cellulose synthase-in 99.9 3E-26 6.4E-31 297.8 31.5 404 103-526 403-840 (2102)
8 KOG0170 E3 ubiquitin protein l 99.9 4.9E-28 1.1E-32 270.5 4.2 175 880-1079 1-188 (621)
9 KOG4224 Armadillo repeat prote 99.7 4.1E-17 8.9E-22 177.5 16.2 383 104-505 85-494 (550)
10 KOG4224 Armadillo repeat prote 99.7 3.1E-15 6.7E-20 163.0 18.9 340 104-463 126-496 (550)
11 PF05804 KAP: Kinesin-associat 99.5 2.3E-12 5E-17 157.8 28.6 361 135-517 276-661 (708)
12 PF10508 Proteasom_PSMB: Prote 99.4 2.5E-10 5.4E-15 137.9 31.6 369 109-522 43-437 (503)
13 PF05804 KAP: Kinesin-associat 99.3 2.3E-10 5.1E-15 140.4 22.8 246 103-369 289-546 (708)
14 cd00020 ARM Armadillo/beta-cat 99.2 2.9E-11 6.2E-16 116.3 10.2 115 144-260 3-120 (120)
15 PF04826 Arm_2: Armadillo-like 99.2 3E-10 6.5E-15 124.7 16.2 194 145-351 9-205 (254)
16 KOG0168 Putative ubiquitin fus 99.1 6.4E-08 1.4E-12 116.0 30.9 217 103-329 210-438 (1051)
17 cd00020 ARM Armadillo/beta-cat 99.1 7.6E-10 1.6E-14 106.4 10.3 117 227-351 3-120 (120)
18 PF10508 Proteasom_PSMB: Prote 99.0 1.2E-07 2.6E-12 114.8 30.7 245 105-371 4-258 (503)
19 KOG1048 Neural adherens juncti 99.0 1.7E-08 3.7E-13 121.7 21.5 197 103-302 232-453 (717)
20 KOG4199 Uncharacterized conser 98.9 6.9E-08 1.5E-12 105.7 17.3 230 118-354 160-406 (461)
21 PRK09687 putative lyase; Provi 98.8 2.9E-07 6.2E-12 103.2 21.3 257 104-457 23-279 (280)
22 PF04826 Arm_2: Armadillo-like 98.8 9.9E-08 2.1E-12 105.0 16.0 196 103-305 11-209 (254)
23 KOG1048 Neural adherens juncti 98.7 8.3E-07 1.8E-11 107.4 20.2 357 149-528 234-664 (717)
24 PTZ00429 beta-adaptin; Provisi 98.6 2.6E-05 5.7E-10 97.6 31.5 236 103-369 31-269 (746)
25 KOG4199 Uncharacterized conser 98.6 1.2E-06 2.7E-11 96.1 16.7 267 113-392 115-414 (461)
26 PRK09687 putative lyase; Provi 98.6 1.1E-06 2.5E-11 98.4 17.1 218 96-367 45-263 (280)
27 PRK13800 putative oxidoreducta 98.5 1.9E-05 4.1E-10 102.4 28.2 276 102-499 619-894 (897)
28 KOG1241 Karyopherin (importin) 98.4 2E-05 4.4E-10 94.5 21.3 405 81-512 228-676 (859)
29 PTZ00429 beta-adaptin; Provisi 98.3 0.0002 4.3E-09 89.9 29.0 301 147-514 31-336 (746)
30 PF01602 Adaptin_N: Adaptin N 98.3 2.6E-05 5.6E-10 95.1 20.5 252 89-369 25-280 (526)
31 PF01602 Adaptin_N: Adaptin N 98.3 1.1E-05 2.4E-10 98.3 16.9 215 105-353 80-298 (526)
32 KOG2171 Karyopherin (importin) 98.3 0.00011 2.3E-09 92.5 25.0 348 103-463 347-765 (1075)
33 PRK13800 putative oxidoreducta 98.3 9.1E-05 2E-09 96.1 25.6 219 81-369 632-851 (897)
34 KOG4500 Rho/Rac GTPase guanine 98.2 4.8E-05 1E-09 86.2 17.5 327 163-527 56-411 (604)
35 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0012 2.7E-08 79.9 28.2 290 147-466 21-352 (970)
36 KOG2171 Karyopherin (importin) 98.1 0.003 6.6E-08 79.9 32.2 394 104-527 4-525 (1075)
37 KOG1293 Proteins containing ar 98.1 0.00079 1.7E-08 80.5 25.7 239 107-353 12-263 (678)
38 KOG2122 Beta-catenin-binding p 98.1 1.4E-05 3.1E-10 100.5 11.7 202 144-354 390-604 (2195)
39 KOG2122 Beta-catenin-binding p 98.0 2.6E-05 5.6E-10 98.2 11.9 221 144-370 335-586 (2195)
40 KOG4500 Rho/Rac GTPase guanine 98.0 0.0021 4.7E-08 73.3 25.8 258 106-370 89-416 (604)
41 KOG2023 Nuclear transport rece 98.0 0.00027 5.9E-09 83.9 19.1 109 193-302 395-506 (885)
42 PF03224 V-ATPase_H_N: V-ATPas 97.9 5E-05 1.1E-09 86.8 11.0 198 148-354 55-272 (312)
43 PF00514 Arm: Armadillo/beta-c 97.9 9.3E-06 2E-10 63.8 3.3 40 181-221 2-41 (41)
44 KOG2160 Armadillo/beta-catenin 97.9 0.00026 5.6E-09 79.9 15.3 184 116-302 94-283 (342)
45 KOG1241 Karyopherin (importin) 97.9 0.0014 3.1E-08 79.3 22.1 398 103-516 363-823 (859)
46 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0083 1.8E-07 73.1 27.8 322 104-460 22-399 (970)
47 KOG2160 Armadillo/beta-catenin 97.8 0.0005 1.1E-08 77.6 15.9 163 162-329 96-265 (342)
48 cd00256 VATPase_H VATPase_H, r 97.7 0.0038 8.3E-08 73.6 21.7 220 103-329 52-288 (429)
49 KOG0213 Splicing factor 3b, su 97.7 0.004 8.6E-08 75.0 21.1 383 103-521 715-1124(1172)
50 PF12460 MMS19_C: RNAPII trans 97.6 0.0078 1.7E-07 71.6 23.8 373 107-515 2-405 (415)
51 PF01749 IBB: Importin beta bi 97.6 1.4E-05 3E-10 75.2 0.2 30 3-32 22-51 (97)
52 PF00514 Arm: Armadillo/beta-c 97.5 7.6E-05 1.6E-09 58.6 3.2 38 140-178 4-41 (41)
53 PF05536 Neurochondrin: Neuroc 97.5 0.0062 1.3E-07 74.6 21.3 246 149-465 6-266 (543)
54 PF03224 V-ATPase_H_N: V-ATPas 97.5 0.00024 5.3E-09 81.1 8.5 186 104-294 105-307 (312)
55 COG5215 KAP95 Karyopherin (imp 97.5 0.0017 3.7E-08 76.1 15.0 397 105-530 177-629 (858)
56 cd00256 VATPase_H VATPase_H, r 97.5 0.021 4.5E-07 67.5 23.9 197 147-353 52-260 (429)
57 COG5215 KAP95 Karyopherin (imp 97.4 0.008 1.7E-07 70.8 18.4 339 146-510 319-674 (858)
58 KOG1293 Proteins containing ar 97.4 0.068 1.5E-06 64.6 26.3 198 103-302 50-262 (678)
59 PF13646 HEAT_2: HEAT repeats; 97.3 0.00092 2E-08 60.9 7.8 88 106-217 1-88 (88)
60 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00024 5.2E-09 59.3 3.3 54 246-299 2-55 (55)
61 KOG1061 Vesicle coat complex A 97.1 0.01 2.2E-07 72.7 16.7 293 104-463 121-456 (734)
62 KOG2023 Nuclear transport rece 97.1 0.026 5.7E-07 67.8 19.4 335 103-459 127-548 (885)
63 PF12348 CLASP_N: CLASP N term 97.1 0.0033 7.1E-08 68.3 11.2 191 114-314 16-216 (228)
64 KOG3678 SARM protein (with ste 97.1 0.0062 1.4E-07 69.9 13.0 208 144-371 176-394 (832)
65 PF13646 HEAT_2: HEAT repeats; 97.1 0.00081 1.8E-08 61.3 5.1 87 150-256 1-88 (88)
66 PF10165 Ric8: Guanine nucleot 97.0 0.021 4.6E-07 68.5 17.5 158 142-299 16-216 (446)
67 KOG1824 TATA-binding protein-i 97.0 0.084 1.8E-06 65.8 22.1 350 108-472 9-519 (1233)
68 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00052 1.1E-08 57.3 2.6 55 163-219 1-55 (55)
69 KOG1059 Vesicle coat complex A 96.9 0.038 8.2E-07 67.0 18.5 186 269-508 141-332 (877)
70 smart00185 ARM Armadillo/beta- 96.9 0.0015 3.3E-08 50.5 4.7 39 182-221 3-41 (41)
71 PF05536 Neurochondrin: Neuroc 96.9 0.11 2.5E-06 63.7 23.2 195 103-302 4-214 (543)
72 KOG1061 Vesicle coat complex A 96.8 0.026 5.5E-07 69.3 16.0 177 105-302 14-190 (734)
73 KOG0213 Splicing factor 3b, su 96.8 0.0083 1.8E-07 72.4 11.5 245 118-380 854-1140(1172)
74 KOG1242 Protein containing ada 96.8 0.17 3.7E-06 61.0 22.3 328 103-464 95-448 (569)
75 KOG2274 Predicted importin 9 [ 96.7 0.27 5.8E-06 61.4 24.0 209 150-370 451-673 (1005)
76 KOG1824 TATA-binding protein-i 96.7 0.18 3.8E-06 63.1 22.0 328 101-464 608-965 (1233)
77 TIGR02270 conserved hypothetic 96.7 0.097 2.1E-06 62.0 19.3 41 272-328 240-280 (410)
78 KOG1058 Vesicle coat complex C 96.4 0.11 2.4E-06 63.4 17.8 207 257-472 122-358 (948)
79 KOG1059 Vesicle coat complex A 96.4 0.91 2E-05 55.7 24.7 232 105-368 145-380 (877)
80 KOG1222 Kinesin associated pro 96.3 0.32 7E-06 56.7 20.0 263 91-370 324-604 (791)
81 TIGR02270 conserved hypothetic 96.3 0.21 4.4E-06 59.3 19.3 154 103-300 53-206 (410)
82 smart00185 ARM Armadillo/beta- 96.3 0.0051 1.1E-07 47.5 4.1 36 142-178 6-41 (41)
83 KOG0212 Uncharacterized conser 96.3 0.4 8.6E-06 57.2 20.9 298 146-465 82-411 (675)
84 KOG1222 Kinesin associated pro 96.2 3.6 7.8E-05 48.5 27.5 96 144-242 300-397 (791)
85 KOG2759 Vacuolar H+-ATPase V1 96.2 0.12 2.7E-06 59.6 15.8 260 105-371 115-424 (442)
86 COG5181 HSH155 U2 snRNP splice 96.2 0.13 2.7E-06 61.5 16.2 200 281-508 655-874 (975)
87 KOG1062 Vesicle coat complex A 96.2 0.42 9E-06 59.2 20.9 178 148-354 142-326 (866)
88 KOG1060 Vesicle coat complex A 96.2 4.2 9.2E-05 50.6 29.1 195 103-328 34-228 (968)
89 COG5181 HSH155 U2 snRNP splice 96.1 0.31 6.8E-06 58.4 19.0 312 149-521 605-929 (975)
90 KOG4413 26S proteasome regulat 96.1 0.19 4.2E-06 56.0 15.8 204 251-530 63-267 (524)
91 PF14664 RICTOR_N: Rapamycin-i 96.0 1.1 2.3E-05 52.8 22.7 315 105-461 26-365 (371)
92 KOG4646 Uncharacterized conser 95.7 0.015 3.3E-07 57.1 5.2 132 191-325 16-149 (173)
93 KOG2759 Vacuolar H+-ATPase V1 95.7 1.7 3.7E-05 50.6 21.9 331 148-504 65-438 (442)
94 KOG1789 Endocytosis protein RM 95.7 1.3 2.9E-05 56.0 22.1 366 122-528 1742-2140(2235)
95 PF13764 E3_UbLigase_R4: E3 ub 95.7 0.22 4.7E-06 63.3 16.3 178 147-329 116-331 (802)
96 KOG1242 Protein containing ada 95.6 1.3 2.7E-05 53.9 21.5 377 104-512 134-531 (569)
97 PF12460 MMS19_C: RNAPII trans 95.5 0.32 6.9E-06 58.0 16.2 204 105-325 190-414 (415)
98 KOG1060 Vesicle coat complex A 95.4 1.2 2.5E-05 55.3 20.4 325 163-526 157-525 (968)
99 COG1413 FOG: HEAT repeat [Ener 95.4 0.33 7.3E-06 55.8 15.8 185 104-349 43-240 (335)
100 KOG1991 Nuclear transport rece 95.2 0.73 1.6E-05 58.4 18.3 323 148-516 410-772 (1010)
101 PF05004 IFRD: Interferon-rela 95.1 0.42 9E-06 54.7 15.1 194 104-303 43-259 (309)
102 KOG3678 SARM protein (with ste 94.9 0.14 3.1E-06 59.3 10.2 156 103-264 179-340 (832)
103 KOG1062 Vesicle coat complex A 94.7 0.41 8.8E-06 59.3 13.9 94 242-354 118-211 (866)
104 KOG4413 26S proteasome regulat 94.5 3.8 8.2E-05 46.2 19.6 355 103-523 81-457 (524)
105 COG5656 SXM1 Importin, protein 94.2 2.1 4.4E-05 52.9 18.0 134 123-262 388-530 (970)
106 KOG0212 Uncharacterized conser 94.1 5.6 0.00012 48.0 20.8 236 118-371 180-427 (675)
107 KOG1789 Endocytosis protein RM 94.0 5.9 0.00013 50.6 21.5 116 103-223 1770-1885(2235)
108 KOG4646 Uncharacterized conser 94.0 0.29 6.4E-06 48.4 8.8 120 142-263 10-131 (173)
109 COG5369 Uncharacterized conser 93.9 0.22 4.7E-06 59.0 9.1 189 133-326 414-617 (743)
110 PF11864 DUF3384: Domain of un 93.8 4.7 0.0001 48.9 20.9 197 116-329 81-313 (464)
111 KOG2274 Predicted importin 9 [ 93.7 6.4 0.00014 49.8 21.4 187 118-313 504-698 (1005)
112 PF12755 Vac14_Fab1_bd: Vacuol 93.7 0.29 6.4E-06 46.2 8.0 92 248-349 3-94 (97)
113 KOG1240 Protein kinase contain 93.5 1 2.3E-05 58.0 14.4 269 106-403 464-767 (1431)
114 KOG1078 Vesicle coat complex C 93.4 9.2 0.0002 47.8 21.7 178 148-354 245-424 (865)
115 PF12717 Cnd1: non-SMC mitotic 93.2 1.5 3.3E-05 46.0 13.4 133 245-395 2-135 (178)
116 KOG2973 Uncharacterized conser 92.9 5.8 0.00013 44.7 17.4 257 234-530 6-297 (353)
117 COG5096 Vesicle coat complex, 92.8 37 0.0008 43.3 26.6 168 157-352 28-196 (757)
118 KOG1517 Guanine nucleotide bin 92.7 1.8 3.9E-05 55.2 14.6 178 122-302 487-672 (1387)
119 PF02985 HEAT: HEAT repeat; I 92.7 0.15 3.3E-06 37.4 3.5 30 149-179 1-30 (31)
120 COG5096 Vesicle coat complex, 92.6 28 0.0006 44.3 24.9 168 113-301 28-195 (757)
121 PF11698 V-ATPase_H_C: V-ATPas 92.4 0.18 3.8E-06 49.2 4.6 73 148-221 43-115 (119)
122 KOG4535 HEAT and armadillo rep 92.2 0.91 2E-05 53.3 10.7 311 104-459 253-602 (728)
123 PF05918 API5: Apoptosis inhib 92.1 4.4 9.6E-05 49.6 17.0 155 123-298 2-159 (556)
124 KOG0915 Uncharacterized conser 92.1 14 0.00031 49.4 22.0 301 148-488 998-1329(1702)
125 KOG2956 CLIP-associating prote 92.1 2.3 5E-05 50.1 13.8 187 103-302 285-478 (516)
126 KOG1517 Guanine nucleotide bin 92.0 2.3 4.9E-05 54.3 14.3 177 168-353 489-673 (1387)
127 COG1413 FOG: HEAT repeat [Ener 91.9 2.5 5.4E-05 48.6 14.2 161 100-301 70-242 (335)
128 KOG2137 Protein kinase [Signal 91.8 3 6.5E-05 51.7 14.9 111 227-352 385-497 (700)
129 PF06371 Drf_GBD: Diaphanous G 91.7 0.51 1.1E-05 49.4 7.6 113 103-220 65-186 (187)
130 PF12348 CLASP_N: CLASP N term 91.6 0.9 1.9E-05 49.2 9.5 183 161-354 19-209 (228)
131 KOG2956 CLIP-associating prote 91.5 4.6 9.9E-05 47.8 15.3 98 205-302 300-401 (516)
132 KOG4535 HEAT and armadillo rep 91.4 0.25 5.4E-06 57.7 5.0 147 154-301 439-603 (728)
133 COG5240 SEC21 Vesicle coat com 91.2 20 0.00043 43.5 20.0 140 148-300 264-406 (898)
134 KOG2137 Protein kinase [Signal 91.1 2.7 5.9E-05 52.0 13.6 235 231-524 271-514 (700)
135 PF09759 Atx10homo_assoc: Spin 91.0 0.65 1.4E-05 44.2 6.6 66 247-315 2-70 (102)
136 KOG0915 Uncharacterized conser 90.9 17 0.00038 48.6 20.9 162 268-464 994-1164(1702)
137 KOG1248 Uncharacterized conser 90.7 69 0.0015 42.3 28.2 256 227-527 646-921 (1176)
138 PF02985 HEAT: HEAT repeat; I 90.7 0.4 8.7E-06 35.2 3.9 30 273-302 1-30 (31)
139 PF11865 DUF3385: Domain of un 90.6 0.74 1.6E-05 47.5 7.3 147 148-301 10-157 (160)
140 KOG1967 DNA repair/transcripti 90.6 2.2 4.7E-05 53.9 12.3 207 122-345 794-1018(1030)
141 KOG0414 Chromosome condensatio 90.5 1.1 2.4E-05 57.7 9.9 163 147-329 918-1083(1251)
142 KOG0211 Protein phosphatase 2A 90.4 27 0.00058 44.7 21.8 343 105-472 237-637 (759)
143 PF10165 Ric8: Guanine nucleot 90.1 18 0.00039 43.7 19.6 70 282-354 42-111 (446)
144 KOG1078 Vesicle coat complex C 89.6 23 0.0005 44.5 19.6 175 269-461 242-422 (865)
145 PF09759 Atx10homo_assoc: Spin 89.6 0.79 1.7E-05 43.6 5.9 59 166-224 3-62 (102)
146 KOG3665 ZYG-1-like serine/thre 89.4 26 0.00056 44.7 20.9 237 100-354 302-546 (699)
147 KOG1240 Protein kinase contain 89.3 12 0.00026 49.0 17.4 110 193-302 424-538 (1431)
148 KOG1077 Vesicle coat complex A 89.2 14 0.0003 45.8 17.1 258 244-530 124-435 (938)
149 PF12717 Cnd1: non-SMC mitotic 89.2 6 0.00013 41.4 13.0 109 118-241 1-111 (178)
150 KOG1943 Beta-tubulin folding c 89.1 5.4 0.00012 51.4 14.2 260 162-463 557-840 (1133)
151 PF14664 RICTOR_N: Rapamycin-i 88.8 14 0.00031 43.4 16.9 190 126-326 4-197 (371)
152 PF08569 Mo25: Mo25-like; Int 88.5 6.4 0.00014 45.6 13.5 200 143-352 71-284 (335)
153 KOG1820 Microtubule-associated 88.2 11 0.00024 48.4 16.4 181 112-302 261-444 (815)
154 PF11841 DUF3361: Domain of un 88.2 2.4 5.2E-05 43.6 8.7 123 142-266 5-137 (160)
155 KOG1077 Vesicle coat complex A 88.2 23 0.00051 44.0 18.0 102 109-224 116-219 (938)
156 PF07814 WAPL: Wings apart-lik 88.0 7.8 0.00017 45.4 14.1 97 102-202 19-116 (361)
157 COG5369 Uncharacterized conser 88.0 1.7 3.6E-05 51.9 8.3 121 227-354 427-548 (743)
158 PF12755 Vac14_Fab1_bd: Vacuol 87.7 0.66 1.4E-05 43.8 4.0 89 210-299 4-94 (97)
159 PF10363 DUF2435: Protein of u 87.6 1.9 4.2E-05 40.3 7.0 83 104-199 3-85 (92)
160 PF12719 Cnd3: Nuclear condens 87.5 22 0.00048 40.4 17.1 167 148-328 26-208 (298)
161 KOG1991 Nuclear transport rece 87.4 57 0.0012 42.2 21.4 332 103-481 456-821 (1010)
162 PF12231 Rif1_N: Rap1-interact 87.1 32 0.0007 40.5 18.6 181 118-302 6-205 (372)
163 KOG2259 Uncharacterized conser 87.0 4.8 0.0001 49.3 11.4 187 143-354 368-558 (823)
164 PF05918 API5: Apoptosis inhib 86.4 11 0.00023 46.4 14.2 78 282-369 235-319 (556)
165 KOG2259 Uncharacterized conser 86.2 5.4 0.00012 48.9 11.3 287 83-392 211-522 (823)
166 KOG1058 Vesicle coat complex C 84.9 14 0.0003 46.2 13.9 282 146-463 132-428 (948)
167 KOG1943 Beta-tubulin folding c 84.7 1.5E+02 0.0032 39.1 25.6 206 105-329 380-594 (1133)
168 KOG2611 Neurochondrin/leucine- 83.8 37 0.00081 40.5 16.2 239 199-464 18-278 (698)
169 PF14668 RICTOR_V: Rapamycin-i 82.2 4.2 9.1E-05 36.4 6.3 58 289-354 4-61 (73)
170 PF12530 DUF3730: Protein of u 81.9 56 0.0012 35.9 16.5 208 193-444 2-216 (234)
171 KOG2973 Uncharacterized conser 81.4 2.2 4.7E-05 47.9 5.1 104 150-261 5-112 (353)
172 PF11841 DUF3361: Domain of un 80.9 14 0.00031 38.1 10.4 126 184-313 4-141 (160)
173 KOG0211 Protein phosphatase 2A 80.4 44 0.00095 42.9 16.6 161 161-329 249-410 (759)
174 COG5240 SEC21 Vesicle coat com 80.2 1.6E+02 0.0034 36.3 27.5 174 272-462 264-444 (898)
175 PF11698 V-ATPase_H_C: V-ATPas 79.9 3.9 8.4E-05 40.1 5.7 72 272-351 43-115 (119)
176 PF06025 DUF913: Domain of Unk 79.6 33 0.00071 40.6 14.5 102 139-240 96-205 (379)
177 PF14500 MMS19_N: Dos2-interac 79.6 1.1E+02 0.0024 34.3 18.7 227 200-466 7-243 (262)
178 KOG1993 Nuclear transport rece 79.3 42 0.00092 42.4 15.3 251 247-518 503-826 (978)
179 smart00638 LPD_N Lipoprotein N 77.8 7.7 0.00017 48.3 9.1 129 232-366 358-487 (574)
180 PF10363 DUF2435: Protein of u 77.1 8.8 0.00019 35.9 7.0 67 235-302 7-73 (92)
181 PF14668 RICTOR_V: Rapamycin-i 77.1 5.5 0.00012 35.6 5.4 67 247-317 3-70 (73)
182 KOG1992 Nuclear export recepto 76.6 2.3E+02 0.0049 36.5 20.4 53 421-473 754-806 (960)
183 KOG1248 Uncharacterized conser 76.5 37 0.00081 44.6 14.4 195 109-315 702-910 (1176)
184 KOG2032 Uncharacterized conser 76.2 36 0.00078 40.8 13.1 203 88-301 197-415 (533)
185 PF08167 RIX1: rRNA processing 75.6 15 0.00033 38.0 9.1 116 108-226 29-148 (165)
186 PF10521 DUF2454: Protein of u 75.2 10 0.00022 42.9 8.4 137 148-285 119-278 (282)
187 KOG3036 Protein involved in ce 75.2 1.2E+02 0.0025 33.7 15.6 129 173-302 102-248 (293)
188 KOG4653 Uncharacterized conser 74.8 21 0.00045 45.4 11.2 187 102-300 725-917 (982)
189 PF08167 RIX1: rRNA processing 73.5 26 0.00057 36.3 10.3 94 421-515 58-154 (165)
190 PF12031 DUF3518: Domain of un 73.3 13 0.00028 40.7 8.0 90 120-217 139-236 (257)
191 PF12031 DUF3518: Domain of un 73.0 24 0.00051 38.8 9.8 120 206-329 80-228 (257)
192 KOG1967 DNA repair/transcripti 72.8 17 0.00038 46.3 9.9 145 103-254 866-1018(1030)
193 COG5231 VMA13 Vacuolar H+-ATPa 72.5 23 0.00049 40.3 9.8 174 148-349 235-426 (432)
194 PF12530 DUF3730: Protein of u 72.0 1.6E+02 0.0035 32.3 17.3 201 107-329 3-215 (234)
195 COG5098 Chromosome condensatio 71.1 11 0.00024 46.5 7.5 145 147-302 891-1038(1128)
196 PF06025 DUF913: Domain of Unk 71.0 1E+02 0.0023 36.4 15.6 183 168-366 3-206 (379)
197 COG5116 RPN2 26S proteasome re 70.2 47 0.001 40.5 12.1 155 105-282 516-672 (926)
198 smart00638 LPD_N Lipoprotein N 69.1 42 0.00092 41.8 12.6 137 148-299 393-543 (574)
199 PF03378 CAS_CSE1: CAS/CSE pro 68.8 60 0.0013 39.1 13.2 164 268-473 113-285 (435)
200 PF14225 MOR2-PAG1_C: Cell mor 67.9 66 0.0014 36.1 12.4 177 147-353 63-256 (262)
201 PF04078 Rcd1: Cell differenti 67.8 45 0.00097 37.2 10.8 193 109-314 2-227 (262)
202 KOG1020 Sister chromatid cohes 67.2 25 0.00053 47.3 9.9 186 101-300 763-959 (1692)
203 PF01603 B56: Protein phosphat 67.2 79 0.0017 37.8 13.8 203 141-354 126-373 (409)
204 KOG1020 Sister chromatid cohes 66.5 2.5E+02 0.0054 38.6 18.4 124 233-371 818-943 (1692)
205 KOG4151 Myosin assembly protei 66.2 59 0.0013 41.2 12.6 176 165-354 435-616 (748)
206 PF13251 DUF4042: Domain of un 65.8 92 0.002 33.0 12.3 133 149-302 40-175 (182)
207 KOG2062 26S proteasome regulat 65.4 77 0.0017 39.9 13.0 102 104-222 518-619 (929)
208 KOG2032 Uncharacterized conser 64.2 1E+02 0.0023 37.2 13.4 187 147-352 180-372 (533)
209 PF04388 Hamartin: Hamartin pr 64.2 52 0.0011 41.9 12.0 184 192-400 5-196 (668)
210 PF11864 DUF3384: Domain of un 63.8 3.4E+02 0.0073 33.0 23.7 234 120-366 5-260 (464)
211 PF12719 Cnd3: Nuclear condens 62.1 23 0.00051 40.2 7.8 107 192-300 27-142 (298)
212 PF01603 B56: Protein phosphat 61.0 2.8E+02 0.0061 33.2 16.8 239 227-512 129-378 (409)
213 cd03568 VHS_STAM VHS domain fa 59.0 47 0.001 33.7 8.5 105 256-367 22-130 (144)
214 KOG2999 Regulator of Rac1, req 58.5 50 0.0011 40.2 9.5 157 103-265 82-247 (713)
215 PF01347 Vitellogenin_N: Lipop 58.4 46 0.001 41.7 10.3 131 233-368 397-533 (618)
216 PF05004 IFRD: Interferon-rela 58.2 2.4E+02 0.0052 32.4 15.1 57 285-349 199-255 (309)
217 PF11701 UNC45-central: Myosin 57.6 5.8 0.00012 40.8 1.7 131 162-298 18-156 (157)
218 PF08713 DNA_alkylation: DNA a 57.5 1.2E+02 0.0026 32.2 11.9 142 151-316 54-196 (213)
219 KOG2213 Apoptosis inhibitor 5/ 56.4 1.9E+02 0.004 34.2 13.3 40 237-282 67-106 (460)
220 PF12830 Nipped-B_C: Sister ch 56.4 42 0.00092 35.5 8.0 78 106-191 10-87 (187)
221 PF01347 Vitellogenin_N: Lipop 56.1 47 0.001 41.7 9.8 135 148-298 431-586 (618)
222 PF06371 Drf_GBD: Diaphanous G 55.7 7.8 0.00017 40.4 2.4 59 283-350 127-186 (187)
223 PF14500 MMS19_N: Dos2-interac 54.8 1E+02 0.0022 34.6 11.0 61 445-507 96-156 (262)
224 PF12726 SEN1_N: SEN1 N termin 54.5 3.8E+02 0.0081 34.7 17.6 191 236-442 446-646 (727)
225 KOG0170 E3 ubiquitin protein l 54.5 4.2 9.1E-05 48.3 0.0 91 976-1077 88-178 (621)
226 PF11865 DUF3385: Domain of un 54.1 65 0.0014 33.2 8.7 78 140-220 78-156 (160)
227 KOG0567 HEAT repeat-containing 53.8 63 0.0014 36.0 8.8 99 100-223 183-282 (289)
228 PF06685 DUF1186: Protein of u 53.7 1.4E+02 0.0031 33.2 11.7 154 147-321 30-201 (249)
229 KOG2734 Uncharacterized conser 51.8 5.1E+02 0.011 31.3 17.8 200 142-354 119-349 (536)
230 KOG2062 26S proteasome regulat 51.6 67 0.0014 40.4 9.3 127 154-302 525-654 (929)
231 PF08506 Cse1: Cse1; InterPro 51.1 63 0.0014 38.1 9.0 122 165-296 227-370 (370)
232 cd03569 VHS_Hrs_Vps27p VHS dom 51.0 77 0.0017 32.1 8.5 92 269-366 38-133 (142)
233 COG5098 Chromosome condensatio 51.0 94 0.002 38.9 10.3 130 103-246 890-1023(1128)
234 COG5116 RPN2 26S proteasome re 50.2 46 0.001 40.5 7.5 123 190-329 550-674 (926)
235 PF10521 DUF2454: Protein of u 50.1 60 0.0013 36.7 8.5 76 192-282 120-203 (282)
236 KOG4151 Myosin assembly protei 49.4 1E+02 0.0022 39.1 10.7 167 148-324 541-719 (748)
237 PF14225 MOR2-PAG1_C: Cell mor 47.5 4E+02 0.0086 29.9 14.2 167 103-285 63-241 (262)
238 PF11707 Npa1: Ribosome 60S bi 47.3 3.7E+02 0.008 31.1 14.5 179 150-357 58-243 (330)
239 PF04388 Hamartin: Hamartin pr 46.4 1.7E+02 0.0036 37.5 12.2 112 267-404 18-145 (668)
240 KOG2734 Uncharacterized conser 46.3 74 0.0016 37.8 8.3 44 178-222 112-155 (536)
241 PF07923 N1221: N1221-like pro 45.7 56 0.0012 37.2 7.4 71 145-242 57-127 (293)
242 COG5231 VMA13 Vacuolar H+-ATPa 45.5 22 0.00047 40.4 3.7 80 140-221 346-428 (432)
243 PF11701 UNC45-central: Myosin 45.1 31 0.00067 35.5 4.7 113 103-219 41-157 (157)
244 KOG1993 Nuclear transport rece 44.3 6E+02 0.013 32.9 15.8 276 152-475 530-826 (978)
245 KOG1243 Protein kinase [Genera 43.8 53 0.0011 41.1 7.0 181 103-297 292-511 (690)
246 PLN03076 ARF guanine nucleotid 42.6 3.5E+02 0.0076 38.5 15.1 201 118-327 1150-1403(1780)
247 PF04078 Rcd1: Cell differenti 41.8 2.9E+02 0.0063 31.0 11.7 139 306-469 80-228 (262)
248 KOG3036 Protein involved in ce 41.2 1.8E+02 0.0039 32.3 9.6 106 115-222 135-248 (293)
249 PF00790 VHS: VHS domain; Int 40.7 1.3E+02 0.0028 30.2 8.3 45 485-529 52-96 (140)
250 cd03567 VHS_GGA VHS domain fam 39.6 1.3E+02 0.0028 30.4 8.0 45 484-528 47-91 (139)
251 smart00288 VHS Domain present 39.4 1.3E+02 0.0028 30.1 7.9 45 485-529 47-91 (133)
252 KOG2999 Regulator of Rac1, req 39.3 2.9E+02 0.0063 34.0 11.7 166 144-315 79-254 (713)
253 cd03568 VHS_STAM VHS domain fa 39.2 1.2E+02 0.0026 30.8 7.7 45 485-529 47-91 (144)
254 cd03567 VHS_GGA VHS domain fam 38.7 1.2E+02 0.0027 30.5 7.7 92 256-350 23-115 (139)
255 smart00288 VHS Domain present 38.0 1.3E+02 0.0029 29.9 7.8 93 268-365 33-129 (133)
256 PF06012 DUF908: Domain of Unk 37.6 1.1E+02 0.0023 35.5 8.1 65 287-354 234-300 (329)
257 COG5656 SXM1 Importin, protein 37.5 2.6E+02 0.0057 35.6 11.3 150 168-328 389-550 (970)
258 PF12830 Nipped-B_C: Sister ch 37.1 3.6E+02 0.0078 28.4 11.4 88 423-525 5-94 (187)
259 PF08569 Mo25: Mo25-like; Int 36.9 4.8E+02 0.01 30.4 13.2 218 103-326 75-306 (335)
260 KOG2073 SAP family cell cycle 36.3 3.4E+02 0.0073 35.5 12.6 64 422-485 180-250 (838)
261 KOG1243 Protein kinase [Genera 35.3 2.4E+02 0.0052 35.6 10.7 149 143-300 288-436 (690)
262 KOG1820 Microtubule-associated 35.1 3.5E+02 0.0076 35.3 12.6 184 150-352 255-444 (815)
263 KOG3665 ZYG-1-like serine/thre 35.1 1.7E+02 0.0038 37.5 10.0 88 215-302 494-588 (699)
264 KOG0301 Phospholipase A2-activ 35.0 3.8E+02 0.0081 33.8 12.1 89 90-184 525-622 (745)
265 KOG2025 Chromosome condensatio 35.0 1.6E+02 0.0034 37.2 8.9 93 268-369 81-176 (892)
266 KOG4653 Uncharacterized conser 34.7 2.1E+02 0.0047 36.9 10.2 185 236-467 732-925 (982)
267 PF08045 CDC14: Cell division 34.6 2.4E+02 0.0051 31.6 9.7 96 125-222 111-208 (257)
268 PF11707 Npa1: Ribosome 60S bi 34.1 7.9E+02 0.017 28.4 18.0 86 445-530 128-216 (330)
269 cd03561 VHS VHS domain family; 33.9 2.1E+02 0.0046 28.4 8.5 79 269-351 34-112 (133)
270 KOG1992 Nuclear export recepto 33.6 1.2E+03 0.026 30.4 16.6 223 268-528 494-733 (960)
271 cd08050 TAF6 TATA Binding Prot 33.6 2.3E+02 0.0049 33.1 9.9 94 245-349 231-338 (343)
272 KOG0414 Chromosome condensatio 33.5 2.8E+02 0.0061 37.1 11.2 127 103-243 917-1047(1251)
273 COG5218 YCG1 Chromosome conden 32.8 1.9E+02 0.0041 35.8 8.9 93 267-368 86-181 (885)
274 KOG2933 Uncharacterized conser 32.8 96 0.0021 35.4 6.3 126 149-285 130-261 (334)
275 PF04821 TIMELESS: Timeless pr 32.7 3.5E+02 0.0076 30.3 11.0 59 149-221 14-72 (266)
276 PF10835 DUF2573: Protein of u 32.6 1.1E+02 0.0023 27.8 5.2 61 147-220 9-70 (82)
277 PF09758 FPL: Uncharacterised 32.0 1.4E+02 0.003 30.6 6.8 133 127-259 2-148 (149)
278 PF11816 DUF3337: Domain of un 31.8 51 0.0011 38.2 4.3 40 878-929 290-329 (331)
279 cd03561 VHS VHS domain family; 31.4 2.3E+02 0.005 28.1 8.3 86 94-181 27-115 (133)
280 cd03569 VHS_Hrs_Vps27p VHS dom 31.0 2.1E+02 0.0046 28.9 8.0 45 485-529 51-95 (142)
281 PF09324 DUF1981: Domain of un 30.6 1.6E+02 0.0034 27.2 6.4 70 427-501 14-85 (86)
282 PF11229 DUF3028: Protein of u 30.5 5E+02 0.011 31.9 11.8 185 148-349 97-304 (589)
283 PF13251 DUF4042: Domain of un 29.8 3.2E+02 0.007 28.9 9.4 72 276-354 44-134 (182)
284 KOG0567 HEAT repeat-containing 29.3 2.5E+02 0.0055 31.5 8.6 62 191-261 218-280 (289)
285 PF06012 DUF908: Domain of Unk 29.0 1.4E+02 0.0031 34.5 7.3 76 126-201 240-326 (329)
286 PF08045 CDC14: Cell division 28.9 3.2E+02 0.0069 30.6 9.5 122 192-329 64-188 (257)
287 KOG2611 Neurochondrin/leucine- 28.8 1.1E+03 0.025 28.7 14.1 175 120-300 26-224 (698)
288 PF12726 SEN1_N: SEN1 N termin 28.0 3.9E+02 0.0085 34.5 11.7 146 103-261 440-586 (727)
289 PF12397 U3snoRNP10: U3 small 27.9 1E+02 0.0022 30.0 5.0 70 148-223 6-76 (121)
290 PF12231 Rif1_N: Rap1-interact 26.5 9.2E+02 0.02 28.4 13.5 157 144-303 125-305 (372)
291 PF10274 ParcG: Parkin co-regu 26.0 3.4E+02 0.0074 28.8 8.6 76 103-181 37-112 (183)
292 cd00197 VHS_ENTH_ANTH VHS, ENT 25.9 2.9E+02 0.0062 26.4 7.7 47 480-526 42-88 (115)
293 KOG1949 Uncharacterized conser 25.6 1.3E+03 0.029 29.5 14.4 177 314-515 126-323 (1005)
294 PF14631 FancD2: Fanconi anaem 25.2 2.8E+02 0.006 38.7 9.9 141 146-293 429-575 (1426)
295 PF00790 VHS: VHS domain; Int 25.2 1.2E+02 0.0027 30.3 5.2 78 268-350 38-117 (140)
296 PF04499 SAPS: SIT4 phosphatas 25.0 2E+02 0.0044 35.2 7.8 85 429-513 61-157 (475)
297 PF10274 ParcG: Parkin co-regu 24.7 5.7E+02 0.012 27.2 10.0 53 250-302 57-110 (183)
298 COG5218 YCG1 Chromosome conden 24.0 3.2E+02 0.0068 34.0 8.7 109 103-223 90-198 (885)
299 PF12054 DUF3535: Domain of un 23.7 85 0.0019 37.9 4.3 58 101-160 309-366 (441)
300 KOG2025 Chromosome condensatio 23.3 3.4E+02 0.0073 34.5 9.0 109 103-223 84-192 (892)
301 KOG4524 Uncharacterized conser 22.5 1.8E+02 0.0038 38.0 6.7 95 267-367 798-900 (1014)
302 PF08389 Xpo1: Exportin 1-like 21.8 2E+02 0.0043 28.2 5.9 139 165-346 4-148 (148)
303 PF04063 DUF383: Domain of unk 21.2 1.5E+02 0.0034 31.6 5.2 74 192-265 53-137 (192)
304 PF08216 CTNNBL: Catenin-beta- 21.1 96 0.0021 30.0 3.2 42 168-211 65-106 (108)
305 cd03565 VHS_Tom1 VHS domain fa 20.6 7.8E+02 0.017 24.8 9.9 106 256-366 23-134 (141)
306 KOG1087 Cytosolic sorting prot 20.4 2.2E+02 0.0047 34.7 6.7 42 487-528 50-91 (470)
307 PF09758 FPL: Uncharacterised 20.1 1.9E+02 0.0041 29.7 5.2 87 419-505 14-102 (149)
No 1
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-101 Score=888.59 Aligned_cols=806 Identities=33% Similarity=0.460 Sum_probs=629.4
Q ss_pred CCcccCCcccccccCCCccccccccCCCCCCC---CCcccccccCCCC----CCCCCCCCCCCCCccccCCcCccccccc
Q 001429 1 MGNRGQKRMEMAVDLPDDKRACSSLDFRPSTS---NSSVQTHLNSTNS----TPETHHNDMDTSSSASASSRSEEEPEKD 73 (1079)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (1079)
|...++++.+.+.+.++|++.|++..+|+.++ ..++..+.+.++. ++. ...++|+++....++..++- ...
T Consensus 34 ~~~~~a~~~s~~~ss~a~s~~ssSs~~~sasS~~d~~~~~~t~sdSsp~gg~G~~-~~~ngs~~~~~e~~sgl~~r-~aa 111 (1051)
T KOG0168|consen 34 ATGAVAGESSYTPSSDADSHSSSSSASRSASSGEDDNNVYATESDSSPLGGYGPH-NTQNGSTSSTNEHGSGLGRR-HAA 111 (1051)
T ss_pred cccccccccccccccccccCccccccccccccccccccccccccCCCCCCCCCCC-CCCCCCcccccCcCccccch-hhh
Confidence 45678999999999999999999999999998 3345444443222 111 12566666554333333210 011
Q ss_pred cCCC-----CCCCCCCCch--------------------hhhHHHHHHHhcCCCchhHHHHHHHhccCCChHHHHHHHHH
Q 001429 74 AGYG-----SCDSDDAEPR--------------------HRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTE 128 (1079)
Q Consensus 74 ~~~~-----~~~~~~~~~~--------------------~~~l~~~~r~l~~~~~~~l~~lv~~L~s~~d~~~ql~Al~~ 128 (1079)
+++| +.|++|-+.. +.-+|-+.|+++++.++++++|+.+|++..||+.|++|+.+
T Consensus 112 ~a~g~~~~~e~dseDs~~grl~~~~e~~~l~qhl~g~lgprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des~Qleal~E 191 (1051)
T KOG0168|consen 112 AAVGSNPLHESDSEDSEAGRLQALLEARGLPQHLFGRLGPRVLQLLHRTIGSSASSKAKKLLQGLQAESDESQQLEALTE 191 (1051)
T ss_pred hhccCCCCCCccccccchhhhhhhhhccccCcccccccchhHHHHhhhcccccchHHHHHHHHhccccCChHHHHHHHHH
Confidence 1222 2222222211 11244456666688899999999999998899999999999
Q ss_pred HHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHH
Q 001429 129 LCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDV 208 (1079)
Q Consensus 129 L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl 208 (1079)
||++|+|+|++++.+|+...+||+||.||++++|+|||++||||||||+++.|+....||+++|||+|++||+.|+|+||
T Consensus 192 lce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDv 271 (1051)
T KOG0168|consen 192 LCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDV 271 (1051)
T ss_pred HHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHH
Q 001429 209 AEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQL 288 (1079)
Q Consensus 209 ~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V 288 (1079)
+||++.||++|+++++.+|+++|+|.++|+|||||++++||.|+.+++|||...+.+.|..|.+++|.|.++|++.|.++
T Consensus 272 AEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ 351 (1051)
T KOG0168|consen 272 AEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKP 351 (1051)
T ss_pred HHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHH
Q 001429 289 VESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSV 360 (1079)
Q Consensus 289 ~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~ 360 (1079)
++.+|.|+.+|+++|.|.++.++.|++.|+|.++.+||... ++.++..+++..+|+|..+|++++ .||.++
T Consensus 352 ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~ 430 (1051)
T KOG0168|consen 352 IESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADT 430 (1051)
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999876 677899999999999999999999 899999
Q ss_pred HHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCcc-----------------------------------
Q 001429 361 LKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQ----------------------------------- 405 (1079)
Q Consensus 361 L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~----------------------------------- 405 (1079)
|..+|.++.+.++......+.+.+.++.+++.++.+|||+++...
T Consensus 431 L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~ 510 (1051)
T KOG0168|consen 431 LKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTN 510 (1051)
T ss_pred HHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccch
Confidence 999999999999888888888989999999999999999999850
Q ss_pred -----------ch---------hhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHH
Q 001429 406 -----------CV---------QLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSD 465 (1079)
Q Consensus 406 -----------~~---------~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~ 465 (1079)
+| -..++|+.+++++||.++.|++.|||+|++||+++++++||++||.||+|++||++++
T Consensus 511 ~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~se 590 (1051)
T KOG0168|consen 511 IDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSE 590 (1051)
T ss_pred hhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHH
Confidence 00 0136678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCCCccCC-CCCCCCCCCC
Q 001429 466 MLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPEKCSQ-LFPAFSGIQL 544 (1079)
Q Consensus 466 ~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~~~~~~-~~~~~~~~~~ 544 (1079)
.|..++++.+++|++|+||+++|+++|++|||++|+||+|+||+|.+.|+||||||+|++|........ ++++.....+
T Consensus 591 li~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~~~~~~~~~pdk~~n~~g 670 (1051)
T KOG0168|consen 591 LIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSVDSNPIDANPDKANNENG 670 (1051)
T ss_pred HHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhccCCccccCCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987443221 1111111122
Q ss_pred CCCCCccccCcccccccc---CccCCC--CCC--CCccccccc----cchHHHHHHHHHHHHhhcCCCccCCcchhhHHH
Q 001429 545 CPSSSQKCAGREVLRCLC---YAFDTG--LSS--SASEKQSCK----LDKDSVHNLAKSIITKYFSPELFGSDKGLTDIL 613 (1079)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~---~~~d~~--~~s--~~~~~~~~~----~~k~~i~~~Ar~~~~~y~~~~~~~~~~~~~~~L 613 (1079)
+.++++.........|.+ .+.+++ .|+ +.+ ..+.| +.+..+..+||.+..+||... .+.+.++.+
T Consensus 671 S~~s~~~~~~ss~~~~~~~~see~~~pslt~~~~~~s-~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~---~~~~~~d~~ 746 (1051)
T KOG0168|consen 671 SADSEEGDSSSSITECDEHQSEELGYPSLTHSEQPDS-VKPPKISDHLLRTRSPKRAKNFGPKYFPSR---LDQGVTDQL 746 (1051)
T ss_pred ccccCCCccccccccccccchhccCCcccccccCCCc-cCCchhHHHHHHhhhhhhhhccCCCCCCch---hhhhhhHhh
Confidence 333333332222222222 233333 111 222 11212 223455566777888888752 356788889
Q ss_pred HHHHHHHHHHHhhhhccccccccccCHHH--HHHHHHHHHHHhcCCCCcCceehhhhchHHHHHHHhccCcccccccccc
Q 001429 614 QDLRSFSAALTDLMNVCTDNEAHARDEEK--FYCILHQIMEKLNGREPVSTFEFIESGIVKSLVTYLTNGLYLRDNAELH 691 (1079)
Q Consensus 614 ~~L~~l~~~L~~~~~~~~~~~~~~~~~e~--~~~~l~~l~~~l~~~~~ISsFEll~SGLV~sLl~~ls~~~~~~~~~~~~ 691 (1079)
..++++...+......... ...+.+++. |..+|..++.++.+++.||+|||.++|+++++.+|++++.+..+....-
T Consensus 747 ~~~knl~s~~s~~l~~~np-~~~gk~e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~ 825 (1051)
T KOG0168|consen 747 ANLKNLHSILSSFLASLNP-ATWGKTEEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKL 825 (1051)
T ss_pred hhhhhhcchhhhhhcccCC-CCCCcccccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 9999998877665533221 122233444 8899999999999999999999999999999999999988765421000
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCCCCCC--------------------------------------------------
Q 001429 692 IPHSDLFVVEKRFEVLARLLLPYSDNLSED-------------------------------------------------- 721 (1079)
Q Consensus 692 ~~~~~~~~~~~Rl~~F~~~f~~~~~~~~~~-------------------------------------------------- 721 (1079)
....+..+..+++++|.+++..-.......
T Consensus 826 ~~~~~e~e~~r~l~vl~~v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~ 905 (1051)
T KOG0168|consen 826 VLRYFEQEILRFLNVLQEVLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIR 905 (1051)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHH
Confidence 011122222333344333321100000111
Q ss_pred ----------------------------CcHHHHHHHHHHHhhhccccceEeccCCccCCCCCCCCCCccccCcceEEEE
Q 001429 722 ----------------------------SPVSVLIQKLQSALSSLENFPVILSHSFKLRSSYATVPYGRCIAHPCLRVRF 773 (1079)
Q Consensus 722 ----------------------------~pl~~LV~KLq~aLsr~E~FpV~~~~~~~~~~~~~~~~~g~s~L~kqlklrL 773 (1079)
.|+..+|+|...||.++|+|||..++.|...++++...+-.-+.++|+|+++
T Consensus 906 ~~~fl~~f~~~ple~~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~~~~~r~~~~s~~~~n~~dlk~~~ 985 (1051)
T KOG0168|consen 906 LRTFLHVFLRLPLEPMLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVKVHDFPAGTGGRGSQFSTSFFNTHDLKCLL 985 (1051)
T ss_pred HHHHHHHHhcCCchhhccccccCCCccccchhhhhhcccCCcchhhcCCCccccccCcCCcccchhhhheeecccccCcc
Confidence 2445555555555555555555555555443332221122226899999999
Q ss_pred EeCCCCccccCCCCCeeeecccccHHHHHhhhhhhhhhccC
Q 001429 774 VRGDGETCLSDFSEDLLTVDPFSSLEAIEGYLWPKVTIKES 814 (1079)
Q Consensus 774 ~r~~d~~~l~~~~~~~VsIh~iAT~~aLe~yL~pRv~~~~~ 814 (1079)
++|+++++.++|+|+.|+|+|.+-++++++|+..|.+...+
T Consensus 986 ~~h~~~~~~kq~kG~~~~iep~~~~~g~q~~~~~~~~~~~~ 1026 (1051)
T KOG0168|consen 986 QRHPTCKNCKQLKGGNVKIEPAAEVQGIQRRSVVRKRGFAR 1026 (1051)
T ss_pred ccCccccchhhhcCCCcccChhhhchhhHHHHHHhhccccc
Confidence 99999999999999999999999999999999999876544
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.1e-67 Score=557.02 Aligned_cols=425 Identities=21% Similarity=0.248 Sum_probs=374.9
Q ss_pred CcccCCcccccccCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccCCcCccccccccCCCCCCC
Q 001429 2 GNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDS 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1079)
+++||||.+-.+||||.||+|.+-|+||-.. +++.+.+ +.+. |+.++
T Consensus 23 delRr~ReeQQvElRkqKreE~LnKrRNl~d---v~e~a~s--------------------s~i~-----meqq~----- 69 (526)
T COG5064 23 DELRRRREEQQVELRKQKREELLNKRRNLAD---VSEEAES--------------------SFIP-----MEQQF----- 69 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc---ccchhhh--------------------ccCc-----hhHHh-----
Confidence 4689999999999999999999999999842 1111100 0000 11111
Q ss_pred CCCCchhhhHHHHHHHhcCCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC
Q 001429 82 DDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET 161 (1079)
Q Consensus 82 ~~~~~~~~~l~~~~r~l~~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~ 161 (1079)
-+.++++...|.++ |-..|+.|+..+|++||.++.||++.++..|+||+||++|....
T Consensus 70 ---------------------~~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q 127 (526)
T COG5064 70 ---------------------YSELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127 (526)
T ss_pred ---------------------hhhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc
Confidence 13568889999998 99999999999999999999999999999999999999996544
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC---cchhccCcccchhh
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~---~~Il~~G~L~~LL~ 238 (1079)
..-+|++|+|+||||++|+..+++.||++||||.|++ ||.+...+++||++||||||++|++ ..|++.|+|.++|.
T Consensus 128 ~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiq-lL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 128 RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQ-LLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred hhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHH-HHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 4567999999999999999999999999999999996 8889999999999999999999975 45999999999999
Q ss_pred ccccC--ChHHHHHHHHHHHHhhcCC-CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 239 YIDFF--STSIQRVALSTVANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 239 lLd~~--~~~vqr~A~~~lsNlc~~~-~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
+|... .+++.|++.|++||+|||+ |+++...+..++|+|..|+.+.|++|+.+|||||+||+|| ..|.++++++
T Consensus 207 ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg---~~E~i~avld 283 (526)
T COG5064 207 LLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG---PNEKIQAVLD 283 (526)
T ss_pred HHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC---cHHHHHHHHh
Confidence 99876 4589999999999999996 7778899999999999999999999999999999999999 8999999999
Q ss_pred CCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHHhhccCC----CCccchhhhhccCC
Q 001429 316 HGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYD----LSHGMSSPHMVDGH 383 (1079)
Q Consensus 316 ~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~----~e~~w~lsni~ag~ 383 (1079)
.|+.++|+++|.+. +..+++|+||.+|||++|++ +|+++.+..||.+.+ +|+||++|||+||+
T Consensus 284 ~g~~~RLvElLs~~-----sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn 358 (526)
T COG5064 284 VGIPGRLVELLSHE-----SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN 358 (526)
T ss_pred cCCcHHHHHHhcCc-----cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC
Confidence 99999999999997 77889999999999999999 999999999998764 68999999999999
Q ss_pred hHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC-
Q 001429 384 CNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS- 462 (1079)
Q Consensus 384 ~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~- 462 (1079)
.+|||+|++ ++|+|||.. .+ ++.++.+|++++|||.|..+++
T Consensus 359 teqiqavid--~nliPpLi~----------------------------------ll-s~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 359 TEQIQAVID--ANLIPPLIH----------------------------------LL-SSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred HHHHHHHHh--cccchHHHH----------------------------------HH-HHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999 777666654 34 4779999999999999999988
Q ss_pred -CHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHH----------hhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 463 -KSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQ----------KLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 463 -~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~----------k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
-|+++++++..+.| ..|+.+|.-.|.+++.++|..++.+++ +.+++|..+.++-|++++|..+..
T Consensus 402 ~~PD~iryLv~qG~I-kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~ 477 (526)
T COG5064 402 NRPDIIRYLVSQGFI-KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD 477 (526)
T ss_pred CCchHHHHHHHccch-hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhh
Confidence 57999999999988 559999999999999999999998874 256789999999999999987754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-66 Score=591.74 Aligned_cols=425 Identities=23% Similarity=0.307 Sum_probs=376.7
Q ss_pred CcccCCcccccccCCCccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccCCcCccccccccCCCCCCC
Q 001429 2 GNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDS 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1079)
++|||||.|..+|+||+||+++++|+|+.. .+ .++. +. +..
T Consensus 20 ~e~Rrrr~e~~veiRk~kree~l~k~R~~~---------------~~----~~~~----------~~-------~~~--- 60 (514)
T KOG0166|consen 20 EEMRRRREEQVVEIRKNKREESLLKRRNDE---------------EE----LMLD----------EL-------LSD--- 60 (514)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHhhhh---------------hh----cccc----------cc-------cch---
Confidence 369999999999999999999999999911 00 0000 00 110
Q ss_pred CCCCchhhhHHHHHHHhcCCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC
Q 001429 82 DDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET 161 (1079)
Q Consensus 82 ~~~~~~~~~l~~~~r~l~~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~ 161 (1079)
.+ ........++.++.++ |+..|+.|+.++|++++...+++++.++..|+||.||++|...+
T Consensus 61 ---------~~--------~~~~~~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~ 122 (514)
T KOG0166|consen 61 ---------SQ--------SQASNLELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD 122 (514)
T ss_pred ---------hH--------HHhhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC
Confidence 00 0012267788899998 99999999999999999999999999888999999999999777
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc---chhccCcccchhh
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH---ACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~---~Il~~G~L~~LL~ 238 (1079)
++.+|++|+||||||++|++++++.||++||||.|+ +|+.+++.+++|||+||||||++|++. .|++.|++.+|+.
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi-~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~ 201 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI-QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR 201 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH-HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH
Confidence 899999999999999999999999999999999999 599999999999999999999999864 5999999999999
Q ss_pred ccccC-ChHHHHHHHHHHHHhhcCC-CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhC
Q 001429 239 YIDFF-STSIQRVALSTVANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSH 316 (1079)
Q Consensus 239 lLd~~-~~~vqr~A~~~lsNlc~~~-~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~ 316 (1079)
++... .+.+.|+++|+++|+|+|+ |++.+..++.++|+|..+|++.|.+|+.+|||||+|++|+ .++.++++++.
T Consensus 202 ~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~ 278 (514)
T KOG0166|consen 202 LLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG---SNEKIQMVIDA 278 (514)
T ss_pred HhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHc
Confidence 99765 5689999999999999998 8888999999999999999999999999999999999998 99999999999
Q ss_pred CchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHHhhccC-----CCCccchhhhhccCC
Q 001429 317 GLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTY-----DLSHGMSSPHMVDGH 383 (1079)
Q Consensus 317 gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~-----~~e~~w~lsni~ag~ 383 (1079)
|++++|+.||.+. +.++++||||++|||++|++ +|+++.|..+|... ++|+||++|||++|+
T Consensus 279 gvv~~LV~lL~~~-----~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 279 GVVPRLVDLLGHS-----SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred cchHHHHHHHcCC-----CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 9999999999988 66778899999999999999 99999999999953 257999999999999
Q ss_pred hHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCC
Q 001429 384 CNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSK 463 (1079)
Q Consensus 384 ~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~ 463 (1079)
++||++|++ + +++|.|+.++. +.+|++|++|+|||.|++..++
T Consensus 354 ~~qiqaVid--a----------------------------------~l~p~Li~~l~-~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 354 QEQIQAVID--A----------------------------------NLIPVLINLLQ-TAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHHHHH--c----------------------------------ccHHHHHHHHh-ccchHHHHHHHHHHHhhcccCC
Confidence 999999998 4 55777777886 5689999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHh---hh----HHHHHHHHHhCHHHHHHHhcCCC
Q 001429 464 SDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQK---LS----DTFLNSFVKEGVFFAIDALLTPE 530 (1079)
Q Consensus 464 ~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k---~p----~~~~~~f~rEGv~~~I~~L~~~~ 530 (1079)
+++++++++.+.| +.++.+|...|.+++.++|..++.|++- .. +.|....+..|++++|+.|..|+
T Consensus 397 ~~qi~yLv~~giI-~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he 469 (514)
T KOG0166|consen 397 PEQIKYLVEQGII-KPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE 469 (514)
T ss_pred HHHHHHHHHcCCc-hhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc
Confidence 9999999999977 6688899999999999999999998853 22 55777899999999999998764
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-34 Score=330.85 Aligned_cols=335 Identities=16% Similarity=0.202 Sum_probs=291.5
Q ss_pred CCCCCchhhhHHHHHHHhcCCC---------chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHH
Q 001429 81 SDDAEPRHRGLRELQRRRSSSD---------HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSP 151 (1079)
Q Consensus 81 ~~~~~~~~~~l~~~~r~l~~~~---------~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp 151 (1079)
||+++.+..+.+.+++.++... .+.++.+|++|..+.+|.+|++|+|+|+++.+.+.+.+ ..++.+|+||
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~agavp 155 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDAGAVP 155 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccCCchH
Confidence 6777778889998888888554 68999999999877689999999999999999887776 5678999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCC-HHHHHHHHHHHHHhhccC-Ccch--
Q 001429 152 VLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEY-LDVAEQCLQALEKISRDQ-PHAC-- 227 (1079)
Q Consensus 152 ~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~-~dl~Eqal~aL~nIs~d~-~~~I-- 227 (1079)
.|+.||.++ +.+++.+|+|||+||+..+|.+++.|+++|++++|+. ++...+ +.+..+++|||.|+|++. |..-
T Consensus 156 ~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~-~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~ 233 (514)
T KOG0166|consen 156 IFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR-LLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD 233 (514)
T ss_pred HHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH-HhccccchHHHHHHHHHHHHHHcCCCCCCcHH
Confidence 999999999 5999999999999999999999999999999999996 665554 589999999999999986 5443
Q ss_pred hccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCC-chhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCC
Q 001429 228 LEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSE-CPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQS 306 (1079)
Q Consensus 228 l~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~-~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~ 306 (1079)
.-..+|+.|..+|.+.+..++.+|+|+++++..|.+.. +.....+++|.|+.+|.+....|+..|+.++.||+.| +
T Consensus 234 ~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG---~ 310 (514)
T KOG0166|consen 234 VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG---S 310 (514)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---c
Confidence 33678999999999999999999999999999886544 3344578999999999999999999999999999998 9
Q ss_pred HHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHHhhccC----CCCccc
Q 001429 307 SQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTY----DLSHGM 374 (1079)
Q Consensus 307 ~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~----~~e~~w 374 (1079)
+++.+.++++|+++.|..||.... ...+...|+|+|+||+.|+. +|++|.|..+|... ++|++|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~----~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSP----KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCc----chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999998442 34567789999999999998 99999999999976 469999
Q ss_pred hhhhh-ccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHH
Q 001429 375 SSPHM-VDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLS 453 (1079)
Q Consensus 375 ~lsni-~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ 453 (1079)
+++|+ ..|+++||..+++ .+.++++++ .+ .-.|.++-..||.
T Consensus 387 aIsN~ts~g~~~qi~yLv~--~giI~plcd----------------------------------lL-~~~D~~ii~v~Ld 429 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVE--QGIIKPLCD----------------------------------LL-TCPDVKIILVALD 429 (514)
T ss_pred HHHhhcccCCHHHHHHHHH--cCCchhhhh----------------------------------cc-cCCChHHHHHHHH
Confidence 99998 4789999999999 777777776 23 2457777778888
Q ss_pred HHHHhhccC
Q 001429 454 VINKLVYLS 462 (1079)
Q Consensus 454 ai~~iv~~~ 462 (1079)
++.+|...+
T Consensus 430 ~l~nil~~~ 438 (514)
T KOG0166|consen 430 GLENILKVG 438 (514)
T ss_pred HHHHHHHHH
Confidence 888888754
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.9e-34 Score=305.50 Aligned_cols=321 Identities=13% Similarity=0.106 Sum_probs=273.9
Q ss_pred ccccccccCCCCCCCCCCCchhhhHHHHHHHhcCCC---------chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccC
Q 001429 67 EEEPEKDAGYGSCDSDDAEPRHRGLRELQRRRSSSD---------HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAM 137 (1079)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~l~~~~---------~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~ 137 (1079)
.++|++..+.. |||++.|+++.-.+++.|+... .+.++++|+.+.+.+....|++|.|+|+++.|.++
T Consensus 71 ~elp~lt~~l~---SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 71 SELPQLTQQLF---SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhHHHHHHHh---hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 36788888877 8999999888888888887443 78899999999666567899999999999999888
Q ss_pred CCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCC--HHHHHHHHHH
Q 001429 138 EDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEY--LDVAEQCLQA 215 (1079)
Q Consensus 138 ~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~--~dl~Eqal~a 215 (1079)
.++ ..++..|+||.||++|.++ +.++..+|+|||+||+.+++.+++.|+.+|++.+|+. |+.+.. +.+...+.|+
T Consensus 148 ~QT-kvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~-ll~ss~~~ismlRn~TWt 224 (526)
T COG5064 148 QQT-KVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG-LLLSSAIHISMLRNATWT 224 (526)
T ss_pred cce-EEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH-HHHhccchHHHHHHhHHH
Confidence 776 5577999999999999998 6999999999999999999999999999999999996 655553 6899999999
Q ss_pred HHHhhccC-Ccch--hccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCc-hhhhhccHHHHHHhhccCCHHHHHH
Q 001429 216 LEKISRDQ-PHAC--LEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC-PSHLMEAVPILSNLLQYEDRQLVES 291 (1079)
Q Consensus 216 L~nIs~d~-~~~I--l~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~-~~~v~~vlP~L~~LL~~~D~~V~~~ 291 (1079)
|+|+|++. |..- .=.-+|+.|.+++..-++.+...|+|++|.+..|..... .....++.+.|+.+|.|++.+|+..
T Consensus 225 LSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 225 LSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred HHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 99999984 4321 113357878888888899999999999999998853332 2234678999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHH
Q 001429 292 VAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKD 363 (1079)
Q Consensus 292 A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~ 363 (1079)
|+..+.||+.| ++.+.+.++++|+++.+-.||.+. ...+...++|+|+||..|+. +++.|.|.+
T Consensus 305 alR~vGNIVTG---~D~QTqviI~~G~L~a~~~lLs~~-----ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 305 ALRSVGNIVTG---SDDQTQVIINCGALKAFRSLLSSP-----KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred HHHhhcCeeec---CccceehheecccHHHHHHHhcCh-----hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 99999999998 899999999999999999999987 45678899999999999987 999999999
Q ss_pred hhccC----CCCccchhhhhc---cCChHHHHHHHHHhhcccccccC
Q 001429 364 ILSTY----DLSHGMSSPHMV---DGHCNQVHEVLKLLNELLPTSVG 403 (1079)
Q Consensus 364 lL~~~----~~e~~w~lsni~---ag~~~qi~~vi~li~~LlP~l~~ 403 (1079)
+|... ++|+||+++|.+ .+-+++|..+++ .|.+.||++
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~--qG~IkpLc~ 421 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS--QGFIKPLCD 421 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH--ccchhHHHH
Confidence 99875 579999999986 345788888888 777766665
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=328.54 Aligned_cols=369 Identities=15% Similarity=0.149 Sum_probs=295.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+.++.++..|+++ ++..|.+|++.|.++.+. .++....++..|+||.||++|++++++.+|++|+|||+||+.++++
T Consensus 188 aGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass-~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e 265 (2102)
T PLN03200 188 AGGVDILVKLLSSG-NSDAQANAASLLARLMMA-FESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE 265 (2102)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence 56788899999886 999999999999877543 3456677889999999999998765689999999999999999999
Q ss_pred chhHHHhCCChHHHHHHhhcCCC---------HHHHHHHHHHHHHhhccCCc--------------c---hhccCcccch
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEY---------LDVAEQCLQALEKISRDQPH--------------A---CLEGGAIMAA 236 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~---------~dl~Eqal~aL~nIs~d~~~--------------~---Il~~G~L~~L 236 (1079)
+++.|+++|+||.|++ ++..+. ..++|+|+|||+|||++.+. . +...|+|+++
T Consensus 266 ~r~~Iv~aGgIp~LI~-lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 266 AKQAIADAGGIPALIN-ATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHHHHCCCHHHHHH-HHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 9999999999999995 776544 45799999999999997432 0 1335888888
Q ss_pred hhccccCChHHH----HHHHHHHHHhhcCCCCC-chhhhh-------------------ccHHHHHHhhccCCHHHHHHH
Q 001429 237 LTYIDFFSTSIQ----RVALSTVANICKKLPSE-CPSHLM-------------------EAVPILSNLLQYEDRQLVESV 292 (1079)
Q Consensus 237 L~lLd~~~~~vq----r~A~~~lsNlc~~~~~~-~~~~v~-------------------~vlP~L~~LL~~~D~~V~~~A 292 (1079)
+..++......+ ++++|+++|+|++..+. .++.+. ++++.|+.||.+.+.++++++
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 888887544444 36789999999987433 232222 456778888888889999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHHh
Q 001429 293 AICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDI 364 (1079)
Q Consensus 293 ~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~l 364 (1079)
||+|.+++++ +++.++.+++.|.++.|+++|.++ +..++..++++|+||+.+++ +|+++.|..+
T Consensus 425 v~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~-----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 425 IRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS-----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred HHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999987 899999999999999999999987 67889999999999999887 8999999999
Q ss_pred hccCC----CCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHh
Q 001429 365 LSTYD----LSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVN 440 (1079)
Q Consensus 365 L~~~~----~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ 440 (1079)
|.+.+ ++++|+++||+. ..+|++.++.- + +.+|.|++++.
T Consensus 497 L~s~~~~iqeeAawAL~NLa~-~~~qir~iV~~-a----------------------------------GAIppLV~LL~ 540 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCC-HSEDIRACVES-A----------------------------------GAVPALLWLLK 540 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHH-C----------------------------------CCHHHHHHHHh
Confidence 98764 368999999976 46677777630 2 45666777776
Q ss_pred ccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHH--HHHHHHHhC
Q 001429 441 SGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDT--FLNSFVKEG 518 (1079)
Q Consensus 441 ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~--~~~~f~rEG 518 (1079)
+.++.+|+.++|+|.++++.++.+++.. +..+|.+++..+...++..+..++.-.... ....-...|
T Consensus 541 -sgd~~~q~~Aa~AL~nLi~~~d~~~I~~----------Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g 609 (2102)
T PLN03200 541 -NGGPKGQEIAAKTLTKLVRTADAATISQ----------LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND 609 (2102)
T ss_pred -CCCHHHHHHHHHHHHHHHhccchhHHHH----------HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc
Confidence 4589999999999999999999887743 345678888888888888887776633221 111122467
Q ss_pred HHHHHHHhcCC
Q 001429 519 VFFAIDALLTP 529 (1079)
Q Consensus 519 v~~~I~~L~~~ 529 (1079)
++..+.+|..+
T Consensus 610 gL~~Lv~LL~s 620 (2102)
T PLN03200 610 ALRTLIQLLSS 620 (2102)
T ss_pred cHHHHHHHHcC
Confidence 88888888764
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=3e-26 Score=297.76 Aligned_cols=404 Identities=12% Similarity=0.070 Sum_probs=321.5
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+..+.||..|... +...|..+++.|+.+. ..++..++.+...|+||.||++|+++ +.++|..|+|+|.||+.++++
T Consensus 403 ~daik~LV~LL~~~-~~evQ~~Av~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 403 AEAKKVLVGLITMA-TADVQEELIRALSSLC-CGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred ccchhhhhhhhccC-CHHHHHHHHHHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHH
Confidence 34566677777776 7899999999998854 44556677788999999999999998 699999999999999999999
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc--c-hhccCcccchhhccccCChHHHHHHHHHHHHhh
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH--A-CLEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~--~-Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc 259 (1079)
++..|+++|+||+|+ +||.+++.+++++|+|+|+||+.+..+ . |.++|++++++.+|+..+..+|+.|+|+++|++
T Consensus 480 nr~aIieaGaIP~LV-~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 480 SKWAITAAGGIPPLV-QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHHHHHCCCHHHHH-HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 599999999999999999999986532 3 447899999999999989999999999999998
Q ss_pred cCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHH
Q 001429 260 KKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIY 339 (1079)
Q Consensus 260 ~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~ 339 (1079)
.+... +.++.|+.+|.++|.+++..++.+|.+|.....+++.+.+.....|.++.|++||.++ +..++
T Consensus 559 ~~~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-----s~~ik 626 (2102)
T PLN03200 559 RTADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-----KEETQ 626 (2102)
T ss_pred hccch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-----CHHHH
Confidence 76432 2458899999999999999999999998764222232344445689999999999988 78899
Q ss_pred HHHHHHHHHHhcCCC--------CChHHHHHHhhccCC----CCccchhhhhc-cCChHHHHHHHHHhhcccccccCccc
Q 001429 340 YGLIGLLVKISSGSI--------LNIGSVLKDILSTYD----LSHGMSSPHMV-DGHCNQVHEVLKLLNELLPTSVGDQC 406 (1079)
Q Consensus 340 ~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~----~e~~w~lsni~-ag~~~qi~~vi~li~~LlP~l~~~~~ 406 (1079)
..+.++|++++++++ .|+++.|..+|.+.. ++++|+++|+. .++.+|+..+++ .+.+|||.+--.
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~--~GaV~pL~~LL~ 704 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA--EDAIKPLIKLAK 704 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH--cCCHHHHHHHHh
Confidence 999999999999987 899999999998765 47899999986 467788888888 999999987400
Q ss_pred hhhccccch------hcccChHHHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHH-HHH-HHhcCCch
Q 001429 407 VQLVLDKQS------FLVDRPDLLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDM-LIE-LLKSANIP 477 (1079)
Q Consensus 407 ~~~~~~r~~------~l~~~p~~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~-L~~-ll~~~~i~ 477 (1079)
.....-++. .+-.+++....+. .+.+|.|+.++. +.++.+|+.|.|++.+++...+.++ +.. +...+.+
T Consensus 705 ~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v- 782 (2102)
T PLN03200 705 SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR-EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTV- 782 (2102)
T ss_pred CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcH-
Confidence 000011111 2345666666666 578999999886 5689999999999999999998876 644 4444555
Q ss_pred HHHhhhhccCChhHHHH--HHHHHHHHHHh------hhHHHHHHHHHhCHHHHH-HHh
Q 001429 478 SFLAGVFTRKDHHVLIL--ALEIAEMILQK------LSDTFLNSFVKEGVFFAI-DAL 526 (1079)
Q Consensus 478 s~La~iL~~~d~~~l~~--aLq~~e~Ll~k------~p~~~~~~f~rEGv~~~I-~~L 526 (1079)
..|.++|+..|...+.. +|+.+..|.+. -+.-|....+.-|.++.+ +-|
T Consensus 783 ~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l 840 (2102)
T PLN03200 783 LALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL 840 (2102)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH
Confidence 55888999999888755 99999988873 111244444555555555 444
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.9e-28 Score=270.53 Aligned_cols=175 Identities=31% Similarity=0.518 Sum_probs=119.2
Q ss_pred eEEEEeCCccCCCCccHHHHHHHHHHhcCCC---ccccccCcccceEEEEeecCCCCC-CCCCC---------CCCCCCC
Q 001429 880 KLTFDLDGQKLERTLTLYQAILQKQIKTDGE---VIAGAKLWTQVYTIIYRRAMESKC-NDPKN---------CVHLHPI 946 (1079)
Q Consensus 880 ~L~F~l~g~~l~~~~Tiy~Av~~~~~~~~~~---~~~~~~iW~~~~tI~yr~~~~~~~-~~~~~---------~~~~~~~ 946 (1079)
+|+|++.|..+++++|+||||+|+.....++ ...++.=|+.+|||+|++-+.... ..+.+ .+.++.
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e~~s~s~~~~~~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~~~~~~~- 79 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDEDESNPLGRGGWNKTYTIWYQREDSESNKDCVGGKRGRAQTAPTKTSPT- 79 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhccccccCCccccCcchhhhhhhhhccchhhhhcccccccccccCCcccccCc-
Confidence 5899999999999999999999986653221 122222399999999995332111 11110 001111
Q ss_pred CCcchhhhccccccchhhhhccccccCCCCChHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccccCCcccccccccCCC
Q 001429 947 SDGDEARLHCASFFSSLFACQLAFELDKSSPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLR 1026 (1079)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~iL~LLr~L~~ln~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1026 (1079)
..+....||...-+..... .+...++++++++|+|+ +-+|.+.+++++......+|
T Consensus 80 n~~~~~~~h~~~~~~~~~~-----~~e~~~~~~~~i~l~rv-------------------~~~~~~~~l~d~~~~~~~vp 135 (621)
T KOG0170|consen 80 NKKHDELSHDPSVSNPLLV-----PLENINPSLDVILLLRV-------------------AIEGYWYYLDDLAMCKEIVP 135 (621)
T ss_pred CCchhhccCChhhcccccc-----chhhcCchHHHHHHHhh-------------------cccchhhhhhhhhhhhcCCC
Confidence 1222333333111111111 11222356666666665 23455556677777778999
Q ss_pred ccccchhhhhhhHHHhhhhHHHHhcCCChHHHHHhhhhCCceeehhhhcccCC
Q 001429 1027 QNDFVNSKLTEKLEQQMRDSAAVSTGGVPSWCNQLMASCPFLFSLKQGASIFS 1079 (1079)
Q Consensus 1027 ~~~Fvn~KLTaKL~rQLqdPLivasg~LP~W~~~L~~~cPFLFPFetR~~~f~ 1079 (1079)
.++|||+|||+||+|||||||+||||.||+||.+|++.|||||||+||++|||
T Consensus 136 ~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~ 188 (621)
T KOG0170|consen 136 TSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFY 188 (621)
T ss_pred hHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.1e-17 Score=177.48 Aligned_cols=383 Identities=15% Similarity=0.147 Sum_probs=272.9
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
...+.++..+++- |+.+|..|-.++.++.. ..+...-.+.-.|+=|.+.+++ .+ +.++|..|+.||+|++.- .+.
T Consensus 85 es~epvl~llqs~-d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmm-td-~vevqcnaVgCitnLaT~-d~n 159 (550)
T KOG4224|consen 85 ESNEPVLALLQSC-DKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMM-TD-GVEVQCNAVGCITNLATF-DSN 159 (550)
T ss_pred hhhhHHHHHHhCc-chhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhc-CC-CcEEEeeehhhhhhhhcc-ccc
Confidence 4456677777776 99999999999998754 2232211222335444444444 44 478999999999999986 566
Q ss_pred hhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc--CCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 184 SGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD--QPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d--~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
...+...|++.+|. ||-.+.++.++..++-+|-|+..- +....+.+|+++-|+.++...++.+|-.++.+++|+.-.
T Consensus 160 k~kiA~sGaL~plt-rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 160 KVKIARSGALEPLT-RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhhccchhhhH-hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 77788899999999 799999999999999999999754 456788999999999999999999999999999999754
Q ss_pred CCCCchhhhhc--cHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHH
Q 001429 262 LPSECPSHLME--AVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIY 339 (1079)
Q Consensus 262 ~~~~~~~~v~~--vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~ 339 (1079)
......-.-.+ ++|.|+.|+...+++++-.|-.|+.+|+.. .+.+-.++++|.+|.+++||.++ .-+.+
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd----t~Yq~eiv~ag~lP~lv~Llqs~-----~~pli 309 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD----TEYQREIVEAGSLPLLVELLQSP-----MGPLI 309 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc----chhhhHHHhcCCchHHHHHHhCc-----chhHH
Confidence 32222222233 899999999999999999999999999964 56667799999999999999866 33455
Q ss_pred HHHHHHHHHHhcCCC-------CChHHHHHHhhccCCCC--ccc---hhhhhccCChHHHHHHHHHhhcccccccCcc-c
Q 001429 340 YGLIGLLVKISSGSI-------LNIGSVLKDILSTYDLS--HGM---SSPHMVDGHCNQVHEVLKLLNELLPTSVGDQ-C 406 (1079)
Q Consensus 340 ~~alr~L~nlas~s~-------~gi~~~L~~lL~~~~~e--~~w---~lsni~ag~~~qi~~vi~li~~LlP~l~~~~-~ 406 (1079)
..-+.+|.||+-+.- +|++..|.++|.....| .|. ++-|+++....-+..+.. .+.+|.+.+.- |
T Consensus 310 lasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e--sgAi~kl~eL~lD 387 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE--SGAIPKLIELLLD 387 (550)
T ss_pred HHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh--cCchHHHHHHHhc
Confidence 567778888766533 89999999999987654 233 334666555555666666 66666665420 0
Q ss_pred h-----hhccccchhcc-cChHHHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH-HHHHH-HHhc-CCc
Q 001429 407 V-----QLVLDKQSFLV-DRPDLLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS-DMLIE-LLKS-ANI 476 (1079)
Q Consensus 407 ~-----~~~~~r~~~l~-~~p~~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~-~~L~~-ll~~-~~i 476 (1079)
. .....-...+. .+... ..|. .+++|+||... .+.+.+||-.+..|+.|..+..+. .-+.+ +-.+ ..|
T Consensus 388 ~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t-~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi 465 (550)
T KOG4224|consen 388 GPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWT-GSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGI 465 (550)
T ss_pred CChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeeccc-CccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhH
Confidence 0 00111111111 11111 1233 47899999965 478999999999999999886533 22333 3333 588
Q ss_pred hHHHhhhhccCChhHHHHHHHHHHHHHHh
Q 001429 477 PSFLAGVFTRKDHHVLILALEIAEMILQK 505 (1079)
Q Consensus 477 ~s~La~iL~~~d~~~l~~aLq~~e~Ll~k 505 (1079)
.++|+.++.+.+..+-..+.=-+.-|++.
T Consensus 466 ~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 466 QGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999998776544444334444443
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.1e-15 Score=163.04 Aligned_cols=340 Identities=15% Similarity=0.134 Sum_probs=250.3
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
..+.-++..+..+ .-.+|-.++..+.++.-.. .+-..+...|.+-.|.++-++. +..+|..|..+|.||.. .-+.
T Consensus 126 ~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d--~nk~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmTh-s~En 200 (550)
T KOG4224|consen 126 LGLDLLILQMMTD-GVEVQCNAVGCITNLATFD--SNKVKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTH-SREN 200 (550)
T ss_pred cChHHHHHHhcCC-CcEEEeeehhhhhhhhccc--cchhhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhh-hhhh
Confidence 3456677777776 5678889999998876653 2334577889999999977777 58999999999999984 5788
Q ss_pred hhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC--cchhccC--cccchhhccccCChHHHHHHHHHHHHhh
Q 001429 184 SGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP--HACLEGG--AIMAALTYIDFFSTSIQRVALSTVANIC 259 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~--~~Il~~G--~L~~LL~lLd~~~~~vqr~A~~~lsNlc 259 (1079)
++..|.+|++|.|++ |+.+.+.++++.|..+++||+.+.. ....++| .+++|+++++..+..++-.|.-++.|++
T Consensus 201 Rr~LV~aG~lpvLVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred hhhhhccCCchhhhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence 999999999999996 9999999999999999999998853 3355777 8999999999999999999999999998
Q ss_pred cCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHH
Q 001429 260 KKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIY 339 (1079)
Q Consensus 260 ~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~ 339 (1079)
....-+-..+-.+.+|.|+.||+++--..+-....||.+|+- .|-.--.|+++|.+.+|++||..++ +..++
T Consensus 280 sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi----hplNe~lI~dagfl~pLVrlL~~~d----nEeiq 351 (550)
T KOG4224|consen 280 SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI----HPLNEVLIADAGFLRPLVRLLRAGD----NEEIQ 351 (550)
T ss_pred ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc----ccCcccceecccchhHHHHHHhcCC----chhhh
Confidence 765444323346899999999998887788888889998874 2333345789999999999999774 55688
Q ss_pred HHHHHHHHHHhcCCC--------CChHHHHHHhhccCCCC------ccchhhhhccCChHHHHHHHHHhhcccccccCc-
Q 001429 340 YGLIGLLVKISSGSI--------LNIGSVLKDILSTYDLS------HGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGD- 404 (1079)
Q Consensus 340 ~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~~e------~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~- 404 (1079)
..+..+|.|++..+. .|.++.|..++.....+ +|.+.-.+ +.+--.++++ .+.+|.|..-
T Consensus 352 chAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal---~d~~k~~lld--~gi~~iLIp~t 426 (550)
T KOG4224|consen 352 CHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL---NDNDKEALLD--SGIIPILIPWT 426 (550)
T ss_pred hhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh---ccccHHHHhh--cCCcceeeccc
Confidence 899999999999777 89999999998876543 33333222 2233345667 7777777763
Q ss_pred --cch-hhccccchh--cccChHHHHHHH-------HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCC
Q 001429 405 --QCV-QLVLDKQSF--LVDRPDLLQNFG-------MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSK 463 (1079)
Q Consensus 405 --~~~-~~~~~r~~~--l~~~p~~~~~f~-------~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~ 463 (1079)
+.. ...++-..+ +..+-+++.+|+ .++-..|+... ++-+.-+|+-+.|.|.-++.-.+
T Consensus 427 ~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl-~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 427 GSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFL-ASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred CccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhCC
Confidence 000 000111111 233444444443 23444455543 45677788888888877766544
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.53 E-value=2.3e-12 Score=157.77 Aligned_cols=361 Identities=18% Similarity=0.194 Sum_probs=254.0
Q ss_pred ccCCCchh-hhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHH
Q 001429 135 FAMEDSLS-SMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCL 213 (1079)
Q Consensus 135 ~~~~~~~~-~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal 213 (1079)
+..+.... .+...|+|+.||.+|.++ +.++...+.++|.+|+- ..++...+.+.|+||.|+ +|+.+++.++.+.++
T Consensus 276 LAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~-kLl~s~~~~l~~~aL 352 (708)
T PF05804_consen 276 LAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLL-KLLPSENEDLVNVAL 352 (708)
T ss_pred HhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHH-HHhcCCCHHHHHHHH
Confidence 33333333 377899999999999988 79999999999999984 567888999999999999 799999999999999
Q ss_pred HHHHHhhccC--CcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhh-ccCCHHHHH
Q 001429 214 QALEKISRDQ--PHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLL-QYEDRQLVE 290 (1079)
Q Consensus 214 ~aL~nIs~d~--~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL-~~~D~~V~~ 290 (1079)
++|.|+|-+. ...+++.|.+|.++.+|.. .+.+..++.++.|+|........-.-.+++|.|+.+| ..++.++..
T Consensus 353 rlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~ 430 (708)
T PF05804_consen 353 RLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQL 430 (708)
T ss_pred HHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccH
Confidence 9999999885 3569999999999999975 3456679999999998654433223458999999875 456778888
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC---CChHHH---HHHh
Q 001429 291 SVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI---LNIGSV---LKDI 364 (1079)
Q Consensus 291 ~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~---~gi~~~---L~~l 364 (1079)
++.+.+.|++. ++...+.+++.|.++.|+....... ++ -.+++|.||+.+++ ..+.+. |..+
T Consensus 431 eliaL~iNLa~----~~rnaqlm~~g~gL~~L~~ra~~~~----D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~ 498 (708)
T PF05804_consen 431 ELIALLINLAL----NKRNAQLMCEGNGLQSLMKRALKTR----DP----LLLKLIRNISQHDGPLKELFVDFIGDLAKI 498 (708)
T ss_pred HHHHHHHHHhc----CHHHHHHHHhcCcHHHHHHHHHhcc----cH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 88999999986 5777889999889999998865442 22 36789999999985 444444 4455
Q ss_pred hccCCC-----CccchhhhhccCChHHHHHHHHHhhcccccccCccch--hhccccch------hcccChHHHHHHH-Hh
Q 001429 365 LSTYDL-----SHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCV--QLVLDKQS------FLVDRPDLLQNFG-MD 430 (1079)
Q Consensus 365 L~~~~~-----e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~--~~~~~r~~------~l~~~p~~~~~f~-~~ 430 (1079)
+...+. |+--+++|+...+- ....+++ =.+|+|.+.+.-.. ..++---+ -+..+++-+..++ .+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~-~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sg 576 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDL-DWAQLLQ-EYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSG 576 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCc-CHHHHHH-hCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 544432 23345567643221 2222221 02344443331000 00000000 0133455555554 48
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHH
Q 001429 431 ILPMLIQVVNSG-ANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDT 509 (1079)
Q Consensus 431 llp~Li~v~~ss-~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~ 509 (1079)
+.+.|++++.+. .|.++--.++.+..+++.+ ++.-..+++..-+..+|-.++..++..+-.++=.++.++++-.++
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~- 653 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEE- 653 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH-
Confidence 999999999877 4788888999999999998 444456777777778888888888777766666667777765443
Q ss_pred HHHHHHHh
Q 001429 510 FLNSFVKE 517 (1079)
Q Consensus 510 ~~~~f~rE 517 (1079)
|....+++
T Consensus 654 w~~ri~~~ 661 (708)
T PF05804_consen 654 WAERIRRE 661 (708)
T ss_pred HHHHhhHH
Confidence 55444444
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=2.5e-10 Score=137.91 Aligned_cols=369 Identities=14% Similarity=0.168 Sum_probs=248.3
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHH
Q 001429 109 ILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLV 188 (1079)
Q Consensus 109 lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV 188 (1079)
++..|+.. +.+.-..++..|.+++.... .... ..++.+.|...|.++ ++.++..|+++|.+++.........++
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 77778766 55555566677877775332 2222 457889999999998 699999999999999998877788888
Q ss_pred hCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc--chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCc
Q 001429 189 RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH--ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC 266 (1079)
Q Consensus 189 ~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~--~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~ 266 (1079)
+.+.++.++. ++..++..+++.|+.+|.+|+...+. .++..+.+..+..++...+..++..+.+++.++|+..+..
T Consensus 117 ~~~l~~~i~~-~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~- 194 (503)
T PF10508_consen 117 DNELLPLIIQ-CLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA- 194 (503)
T ss_pred CccHHHHHHH-HHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH-
Confidence 9999999995 88889999999999999999987543 4778888888888888766677778999999999875432
Q ss_pred hhhh--hccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCC-CCccHHHHHH
Q 001429 267 PSHL--MEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTT-LSQPIYYGLI 343 (1079)
Q Consensus 267 ~~~v--~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~-~~~~i~~~al 343 (1079)
+..+ .++++.+...|..+|.-++.+|+-+|+.++. ++...+.+.+.|+++.|+++|......+ .+.-.+...+
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 3444 4699999999999999999999999999997 4667899999999999999997654333 2222334555
Q ss_pred HHHHHHhcCCC---CChHHHH----HHhhccCCC---Cccc-hhhhhccCChHHHHHHHHHhhcccccccCccchhhccc
Q 001429 344 GLLVKISSGSI---LNIGSVL----KDILSTYDL---SHGM-SSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLD 412 (1079)
Q Consensus 344 r~L~nlas~s~---~gi~~~L----~~lL~~~~~---e~~w-~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~ 412 (1079)
+..|+++..++ .+..+.+ ..++...+. .+++ +++.| +.+.+-.+.+
T Consensus 271 ~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i-gst~~G~~~L---------------------- 327 (503)
T PF10508_consen 271 KFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI-GSTVEGKQLL---------------------- 327 (503)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-hCCHHHHHHH----------------------
Confidence 99999999766 3323333 222222222 1111 22232 2222222222
Q ss_pred cchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH---HHHHHH-------HhcCCchHHHhh
Q 001429 413 KQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS---DMLIEL-------LKSANIPSFLAG 482 (1079)
Q Consensus 413 r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~---~~L~~l-------l~~~~i~s~La~ 482 (1079)
....++.+..+++.+. + +..+...++|-.|+.++.+++..... +.+..+ +...+...++-+
T Consensus 328 ----~~~~~~~~~~~l~~~~----~-~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~ 398 (503)
T PF10508_consen 328 ----LQKQGPAMKHVLKAIG----D-AIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS 398 (503)
T ss_pred ----HhhcchHHHHHHHHHH----H-HhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 0122233333222211 2 33456778999999999999887654 222222 222344435555
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHH
Q 001429 483 VFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFA 522 (1079)
Q Consensus 483 iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~ 522 (1079)
++.+.=+.+=..++.++.-|... |+.........|.++.
T Consensus 399 ~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~ 437 (503)
T PF10508_consen 399 LLKQPFPELRCAAYRLLQALAAQ-PWGQREICSSPGFIEY 437 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHhCccHHhh
Confidence 55544345555777777766663 6555544444444433
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.28 E-value=2.3e-10 Score=140.38 Aligned_cols=246 Identities=19% Similarity=0.228 Sum_probs=189.9
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+.+.-|+..|.++ +..+...++..|.+ ||.-. .+...+...|+||.|+++|.++ +.+++..|.++|.|++.+ ++
T Consensus 289 ~~iV~~Lv~~Ldr~-n~ellil~v~fLkk-LSi~~-ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd-~~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLDRE-NEELLILAVTFLKK-LSIFK-ENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFD-PE 363 (708)
T ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHH-HcCCH-HHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcC-HH
Confidence 56778888888877 88889899999977 45543 3456678999999999999998 689999999999999975 67
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC--cchhccCcccchhhcccc-CChHHHHHHHHHHHHhh
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP--HACLEGGAIMAALTYIDF-FSTSIQRVALSTVANIC 259 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~--~~Il~~G~L~~LL~lLd~-~~~~vqr~A~~~lsNlc 259 (1079)
.+..+|+.|+||.|+. |+..+ ..++-|+..|.+||.+.. ..+...++++.++++|-. ....++..+++.+.|++
T Consensus 364 ~R~~mV~~GlIPkLv~-LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVE-LLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHHHCCCcHHHHH-HhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 7899999999999995 77643 566779999999999853 345567899999998655 46667888999999999
Q ss_pred cCCCCCchhhhhccHHHHHHh-hccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccH
Q 001429 260 KKLPSECPSHLMEAVPILSNL-LQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPI 338 (1079)
Q Consensus 260 ~~~~~~~~~~v~~vlP~L~~L-L~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i 338 (1079)
.+....+...-.+.++.|+.. ++..|+-+. -+|.||+.. ++ ..+..+ .+.|..|+.++..++ +...
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~h---~~-~~k~~f-~~~i~~L~~~v~~~~----~ee~ 507 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQH---DG-PLKELF-VDFIGDLAKIVSSGD----SEEF 507 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHhc---Cc-hHHHHH-HHHHHHHHHHhhcCC----cHHH
Confidence 886544322223678888877 555665544 377788753 43 344444 257888888887653 5678
Q ss_pred HHHHHHHHHHHhcCCC--------CChHHHHHHhhccCC
Q 001429 339 YYGLIGLLVKISSGSI--------LNIGSVLKDILSTYD 369 (1079)
Q Consensus 339 ~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~ 369 (1079)
...++.+|+|+...+. .++++.|..+|....
T Consensus 508 ~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~ 546 (708)
T PF05804_consen 508 VVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA 546 (708)
T ss_pred HHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC
Confidence 8899999999987654 799999999998653
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=2.9e-11 Score=116.31 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=105.5
Q ss_pred hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 144 MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
+...|++|.|+++|.++ +++++..|+|||.|++.+.++....+++.|++|.|+. ++..++..+++.|+|+|+||+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~-~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQ-LLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH-HHhCCCHHHHHHHHHHHHHHccCc
Confidence 55789999999999988 5999999999999999999999999999999999995 888889999999999999999887
Q ss_pred Cc---chhccCcccchhhccccCChHHHHHHHHHHHHhhc
Q 001429 224 PH---ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK 260 (1079)
Q Consensus 224 ~~---~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~ 260 (1079)
+. .+.+.|+++.++++++..+..+++.|+|++.|+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 43 36778999999999999999999999999999983
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.19 E-value=3e-10 Score=124.67 Aligned_cols=194 Identities=18% Similarity=0.182 Sum_probs=157.2
Q ss_pred hccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 001429 145 MADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP 224 (1079)
Q Consensus 145 ~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~ 224 (1079)
...+-+..|+.+|+..++|.+|..|..+|+|.+ +.|.....+-+.|+|+.+. .++..++..++++|+|||.|+|....
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~-~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIG-SLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHH-HHcCCCChHHHHHHHHHHHhcCCChh
Confidence 455667899999998878999999999999975 5677777777899999999 59999999999999999999998754
Q ss_pred cc-hhccCcccchhhcccc--CChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 001429 225 HA-CLEGGAIMAALTYIDF--FSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAE 301 (1079)
Q Consensus 225 ~~-Il~~G~L~~LL~lLd~--~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~ 301 (1079)
.. .++. .++.++..+-. .+..+|..++.++.|++..... -..+.+.+|.|..+|..++.+++.+++++|.+++.
T Consensus 87 n~~~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 87 NQEQIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 32 3332 35555554322 2678999999999999854322 34567899999999999999999999999999997
Q ss_pred ccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhc
Q 001429 302 QLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISS 351 (1079)
Q Consensus 302 ~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas 351 (1079)
++.....++.++++..++.|+.... ...+...+|.++.||..
T Consensus 164 ----np~~~~~Ll~~q~~~~~~~Lf~~~~----~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 164 ----NPDMTRELLSAQVLSSFLSLFNSSE----SKENLLRVLTFFENINE 205 (254)
T ss_pred ----CHHHHHHHHhccchhHHHHHHccCC----ccHHHHHHHHHHHHHHH
Confidence 5899999999999999999998653 45566677777777633
No 16
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.4e-08 Score=116.03 Aligned_cols=217 Identities=11% Similarity=0.103 Sum_probs=159.1
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
...++.|+.-|+.+.++++++.|+++|..+.-.. ++....++..++||.|++=|..=...++-+++..||-+|....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 5677888888888889999999999998875443 3444557788999999987765446888889999999998754
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC----CcchhccCcccchhhccccCChHHHHHHHHHHHHh
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ----PHACLEGGAIMAALTYIDFFSTSIQRVALSTVANI 258 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~----~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNl 258 (1079)
-.+++++|++-+.+. .++--.+..++.|+.+-.|+|..- ...|.+ +||.|-.+|...+....-.++-++..+
T Consensus 287 -~~AiL~AG~l~a~Ls-ylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 287 -PKAILQAGALSAVLS-YLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred -cHHHHhcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 478999999998885 666667889999999999999763 233544 566666666665666666677777766
Q ss_pred hcCC-CCC-chhhh--hccHHHHHHhhccCCH----HHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC
Q 001429 259 CKKL-PSE-CPSHL--MEAVPILSNLLQYEDR----QLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 259 c~~~-~~~-~~~~v--~~vlP~L~~LL~~~D~----~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
+.+- +.+ .++.+ .+.+....+||.-++. .+..-....|+-++.+ .+.-...+...++..-|..+|...
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~---~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG---SPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC---ChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5553 222 34443 5788888888876643 2344555666667766 788888888889998888888643
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.06 E-value=7.6e-10 Score=106.37 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=101.8
Q ss_pred hhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhh-ccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCC
Q 001429 227 CLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLM-EAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQ 305 (1079)
Q Consensus 227 Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~-~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~ 305 (1079)
+++.|+++.++.+|...+..++..|+|++.|+|.+.+......+. +++|.|..+|.++|.+++..|+|++++|+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~--- 79 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG--- 79 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC---
Confidence 567889999999998888889999999999999886444434444 8999999999999999999999999999987
Q ss_pred CHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhc
Q 001429 306 SSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISS 351 (1079)
Q Consensus 306 ~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas 351 (1079)
.+...+.+++.|+++.++++|... +..+...++++|++|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhhC
Confidence 677888889999999999999876 57788999999999874
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.04 E-value=1.2e-07 Score=114.75 Aligned_cols=245 Identities=17% Similarity=0.177 Sum_probs=193.1
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
-+..++..|... ...++++..+...+... +.+..+ ..+.+..+|+.. +.+.-..+|.+|..+.+...-
T Consensus 4 ~~~~~l~~l~~~---~~~~~~L~~l~~~~~~~--~~l~~~----~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~-- 71 (503)
T PF10508_consen 4 WINELLEELSSK---AERLEALPELKTELSSS--PFLERL----PEPVLFDCLNTS-NREQVELICDILKRLLSALSP-- 71 (503)
T ss_pred HHHHHHHHHhcc---cchHHHHHHHHHHHhhh--hHHHhc----hHHHHHHHHhhc-ChHHHHHHHHHHHHHHhccCH--
Confidence 456777777766 34466777776655422 112222 234488889877 688888999999999985432
Q ss_pred hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC---cchhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 185 GLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~---~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
..+ ..+..+.|. +.|.+++..+++.|+++|++++++.. ..+.+.+.++.++.+|...+..+.+.|+.++.+++..
T Consensus 72 ~~l-~~~~~~~L~-~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 72 DSL-LPQYQPFLQ-RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHH-HHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 222 346667777 68899999999999999999998763 3467899999999999999999999999999999987
Q ss_pred CCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHH
Q 001429 262 LPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYG 341 (1079)
Q Consensus 262 ~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~ 341 (1079)
.+.....+-.+.++.|..++...+..++-.++.++.+|+.. +++..+.+.+.|+++.++..|... +.-++..
T Consensus 150 ~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~---S~~~~~~~~~sgll~~ll~eL~~d-----DiLvqln 221 (503)
T PF10508_consen 150 PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH---SPEAAEAVVNSGLLDLLLKELDSD-----DILVQLN 221 (503)
T ss_pred chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CHHHHHHHHhccHHHHHHHHhcCc-----cHHHHHH
Confidence 54333222345699999999988888999999999999875 899999999999999999999975 6678889
Q ss_pred HHHHHHHHhcCCC-------CChHHHHHHhhccCCCC
Q 001429 342 LIGLLVKISSGSI-------LNIGSVLKDILSTYDLS 371 (1079)
Q Consensus 342 alr~L~nlas~s~-------~gi~~~L~~lL~~~~~e 371 (1079)
++.+|+.++.... .|+++.|..++.+...+
T Consensus 222 alell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 222 ALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 9999999999555 89999999999876543
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.01 E-value=1.7e-08 Score=121.71 Aligned_cols=197 Identities=18% Similarity=0.145 Sum_probs=145.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
...+++.+..|.+. ++.+|-.|.-.+ ..+++.++.....+-.-|-||.||.+|.+. +.++|..|||||-|+.-+...
T Consensus 232 d~~lpe~i~mL~~q-~~~~qsnaaayl-QHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQ-DPSVQSNAAAYL-QHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccccHHHHHHHhcc-ChhhhHHHHHHH-HHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCC
Confidence 45678888899887 999999888777 778888877666677889999999999999 799999999999999987665
Q ss_pred --chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC-cc--------hhccCcccchhhc------cccCCh
Q 001429 183 --SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP-HA--------CLEGGAIMAALTY------IDFFST 245 (1079)
Q Consensus 183 --~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~-~~--------Il~~G~L~~LL~l------Ld~~~~ 245 (1079)
.--+|.++|.||.|++.|-.+.+.+++|++.-+|-|++.... .+ ++...+|.+.-.+ .+++..
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccc
Confidence 667788999999999744456899999999999999987532 11 2223333322211 233346
Q ss_pred HHHHHHHHHHHHhhcCCCCC--chhhhhccHHHHHHhhc------cCCHHHHHHHHHHHHHHHhc
Q 001429 246 SIQRVALSTVANICKKLPSE--CPSHLMEAVPILSNLLQ------YEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 246 ~vqr~A~~~lsNlc~~~~~~--~~~~v~~vlP~L~~LL~------~~D~~V~~~A~~als~I~~~ 302 (1079)
.+.++++-+|.|+....... .+-...+.+-.|+..++ .-|.+-++++.-.+-|+...
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr 453 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR 453 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence 77888888998887632211 22234567777777755 45788888887777777644
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=6.9e-08 Score=105.73 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=181.4
Q ss_pred ChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC---------CcchhHHH
Q 001429 118 DPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIF---------PRSSGLLV 188 (1079)
Q Consensus 118 d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~---------p~~~~~VV 188 (1079)
+.++-...++.++.. ..++|.+-+.|...+++|.+..-|..+.-.++..+++|++..+.-.. ..+.+.++
T Consensus 160 ~~dlt~~~~~~v~~A-c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia 238 (461)
T KOG4199|consen 160 SEEVTLLTLQWLQKA-CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIA 238 (461)
T ss_pred hHHHHHHHHHHHHHH-HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHH
Confidence 555666666667554 45577777789899999999977776544578889999999986532 35677888
Q ss_pred hCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC--CcchhccCcccchhhccccCChH----HHHHHHHHHHHhhcCC
Q 001429 189 RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ--PHACLEGGAIMAALTYIDFFSTS----IQRVALSTVANICKKL 262 (1079)
Q Consensus 189 ~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~--~~~Il~~G~L~~LL~lLd~~~~~----vqr~A~~~lsNlc~~~ 262 (1079)
..|+...|++-|..--+++..--...||+.|+-.+ ...|.+.|||..++.+++....+ .-|.++..++-++.+.
T Consensus 239 ~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D 318 (461)
T KOG4199|consen 239 KEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD 318 (461)
T ss_pred HhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC
Confidence 88999999986665556888888899999999765 46799999999999999875443 4467888888887665
Q ss_pred CCCchhhhhccHHHHHHhh-c-cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHH
Q 001429 263 PSECPSHLMEAVPILSNLL-Q-YEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYY 340 (1079)
Q Consensus 263 ~~~~~~~v~~vlP~L~~LL-~-~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~ 340 (1079)
...+-.+-++.+|.++.++ . ++|+.|++++|.|++.||=+ +|++-..+++.|+-...++-+.-- ++...++.
T Consensus 319 svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR---~pdhsa~~ie~G~a~~avqAmkah---P~~a~vQr 392 (461)
T KOG4199|consen 319 SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR---SPDHSAKAIEAGAADLAVQAMKAH---PVAAQVQR 392 (461)
T ss_pred chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc---CcchHHHHHhcchHHHHHHHHHhC---cHHHHHHH
Confidence 5444344568999999984 3 46899999999999999987 899999999999999999988733 12567888
Q ss_pred HHHHHHHHHhcCCC
Q 001429 341 GLIGLLVKISSGSI 354 (1079)
Q Consensus 341 ~alr~L~nlas~s~ 354 (1079)
++.++|.||+..+.
T Consensus 393 nac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 393 NACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998877
No 21
>PRK09687 putative lyase; Provisional
Probab=98.83 E-value=2.9e-07 Score=103.18 Aligned_cols=257 Identities=14% Similarity=0.101 Sum_probs=183.2
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
-.++.|+..|... |..++..|+++|.++ . ...+++.++.++.++ ++.++..|+|+|+.|-.. ..
T Consensus 23 ~~~~~L~~~L~d~-d~~vR~~A~~aL~~~---~---------~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~--~~ 86 (280)
T PRK09687 23 LNDDELFRLLDDH-NSLKRISSIRVLQLR---G---------GQDVFRLAIELCSSK-NPIERDIGADILSQLGMA--KR 86 (280)
T ss_pred ccHHHHHHHHhCC-CHHHHHHHHHHHHhc---C---------cchHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCC--cc
Confidence 4567788888766 899999999999754 1 234567788888888 799999999999998542 11
Q ss_pred hhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCC
Q 001429 184 SGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLP 263 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~ 263 (1079)
. ..-++|.|...++.-++..++..|+.+||+++...+.. ....+..+...+...+..+++.|+++++++..
T Consensus 87 ~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 87 C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 1 12367888853467778999999999999996543211 12234445555555677899999999976531
Q ss_pred CCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHH
Q 001429 264 SECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLI 343 (1079)
Q Consensus 264 ~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~al 343 (1079)
..++|.|..+|.++|..|...|+++|..+..+ ++ .+++.|+.+|... +..+...++
T Consensus 158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---~~---------~~~~~L~~~L~D~-----~~~VR~~A~ 213 (280)
T PRK09687 158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---NP---------DIREAFVAMLQDK-----NEEIRIEAI 213 (280)
T ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---CH---------HHHHHHHHHhcCC-----ChHHHHHHH
Confidence 34789999999999999999999999998432 33 3566788888766 677888999
Q ss_pred HHHHHHhcCCCCChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHH
Q 001429 344 GLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDL 423 (1079)
Q Consensus 344 r~L~nlas~s~~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~ 423 (1079)
+.||.+-. ..+++.|...|.... |. ..++.-+.++ ++|
T Consensus 214 ~aLg~~~~---~~av~~Li~~L~~~~----~~------------~~a~~ALg~i---------------------g~~-- 251 (280)
T PRK09687 214 IGLALRKD---KRVLSVLIKELKKGT----VG------------DLIIEAAGEL---------------------GDK-- 251 (280)
T ss_pred HHHHccCC---hhHHHHHHHHHcCCc----hH------------HHHHHHHHhc---------------------CCH--
Confidence 99998632 357888888887532 21 1222211211 111
Q ss_pred HHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 001429 424 LQNFGMDILPMLIQVVNSGANIFVCYGCLSVINK 457 (1079)
Q Consensus 424 ~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~ 457 (1079)
..+|.|.++.....|..|++++.+++.+
T Consensus 252 ------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 3578888877767799999999999865
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.79 E-value=9.9e-08 Score=104.97 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=154.0
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
+..++.++.-|+...||.+|-.|+..+++..... .+.+.+...|.++.+..+|..+ ++.++..|.|||.|++... +
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~-e 86 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVND-E 86 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCCh-h
Confidence 4678899999998889999999999999864432 3334466779999999999998 6999999999999998653 3
Q ss_pred chhHHHhCCChHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCC-cchhccCcccchhhccccCChHHHHHHHHHHHHhhc
Q 001429 183 SSGLLVRHDAVPALCQRLKAIE-YLDVAEQCLQALEKISRDQP-HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICK 260 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~-~~dl~Eqal~aL~nIs~d~~-~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~ 260 (1079)
....+ + -.|+..|+.....+ +.+++..++.+|.|++.... ..++ .+.++.++.+|...+..+|..+++++.|++.
T Consensus 87 n~~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 87 NQEQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hHHHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 33333 2 35888886555443 57888999999999987642 3344 4578999999998899999999999999987
Q ss_pred CCCCCchhhhhccHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCC
Q 001429 261 KLPSECPSHLMEAVPILSNLLQYE-DRQLVESVAICLIKIAEQLSQ 305 (1079)
Q Consensus 261 ~~~~~~~~~v~~vlP~L~~LL~~~-D~~V~~~A~~als~I~~~~~~ 305 (1079)
+......-...++++.|..+++.. +.+++..+++.+.||..+++.
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 743222223457899999998875 788999999999999988753
No 23
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.68 E-value=8.3e-07 Score=107.45 Aligned_cols=357 Identities=13% Similarity=0.133 Sum_probs=234.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC----
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---- 224 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~---- 224 (1079)
=+|.-|.+|.+. ++.+|-.|+--|-.++-+.......|-..|+||.||. |+.+...+++.||+|||.|+.-+..
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~-Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVA-LLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHH-HhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 478889999988 6999999999999999888877777778999999995 9999999999999999999986643
Q ss_pred -cchhccCcccchhhcccc-CChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc--------------cCCHHH
Q 001429 225 -HACLEGGAIMAALTYIDF-FSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ--------------YEDRQL 288 (1079)
Q Consensus 225 -~~Il~~G~L~~LL~lLd~-~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~--------------~~D~~V 288 (1079)
-+|-+.|||+.++..|.. .+..++..+.-++.|+..+ +.-...++.+.+++|.+.+. ..+..|
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 258899999999999987 4788889999999999876 33345677889999988743 125779
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHhC-CchHHHHHhhcCC-CCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhc
Q 001429 289 VESVAICLIKIAEQLSQSSQMLDEVCSH-GLINQTTHLLNLN-SRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILS 366 (1079)
Q Consensus 289 ~~~A~~als~I~~~~~~~~e~i~~lv~~-gll~~Lv~LL~~~-~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~ 366 (1079)
..++.-||.|++.. ..+..+.+-+. |+|..|+..+.+. .....+.+.+.+|+-+|.|+.---.+.+.+...+.+.
T Consensus 391 f~n~tgcLRNlSs~---~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSA---GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred eehhhhhhccccch---hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 99999999999875 67777777764 8999999988631 1122356677788888888744333333333333332
Q ss_pred cCC----------CCccchh--------------h--hhc-cCC----hHHHHHH-HHHhh------------ccccccc
Q 001429 367 TYD----------LSHGMSS--------------P--HMV-DGH----CNQVHEV-LKLLN------------ELLPTSV 402 (1079)
Q Consensus 367 ~~~----------~e~~w~l--------------s--ni~-ag~----~~qi~~v-i~li~------------~LlP~l~ 402 (1079)
+.. ...||.- - +.. .|. +.+|... +.+++ |.|+.+.
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 211 0011110 0 000 011 1112111 22222 1111111
Q ss_pred CccchhhccccchhcccChHHHHHHH---HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHH
Q 001429 403 GDQCVQLVLDKQSFLVDRPDLLQNFG---MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSF 479 (1079)
Q Consensus 403 ~~~~~~~~~~r~~~l~~~p~~~~~f~---~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~ 479 (1079)
-. .-.-.+++.+-+ +..+|.|++... ..+.+|.+.+..++.||.-.... ++++....|..+
T Consensus 548 A~------------~~~~~~~~~~~v~~kekgl~~l~~ll~-~~~~~vv~s~a~~LrNls~d~rn---k~ligk~a~~~l 611 (717)
T KOG1048|consen 548 AG------------LWTWSEYMRGAVFRKEKGLPPLVELLR-NDDSDVVRSAAGALRNLSRDIRN---KELIGKYAIPDL 611 (717)
T ss_pred cc------------CCcchhHHHhhhhhhccCccHHHHHHh-cCCchHHHHHHHHHhhhccCchh---hhhhhcchHHHH
Confidence 11 001133333222 467899999886 56888999999999999876432 233333333222
Q ss_pred Hhhhhc-----cCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 480 LAGVFT-----RKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 480 La~iL~-----~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
+-.+=. .-+..++..++..+..++.+.+..-+..|.- |.+.++-.|..
T Consensus 612 v~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~-~g~~kL~~I~~ 664 (717)
T KOG1048|consen 612 VRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEI-KGIPKLRLISK 664 (717)
T ss_pred HHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhc-cChHHHHHHhc
Confidence 211111 1234577788888888888878755555554 55577777754
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=98.61 E-value=2.6e-05 Score=97.60 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=162.7
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+...+|-+.|++. +...+.+|++.+=-...++. ....+.|..|+++.++ +.+++...--.|.++++..|+
T Consensus 31 kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~-------DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGR-------DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCC-------CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChH
Confidence 46778888999887 77777777766543333331 2334667788899888 699999998999999988887
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKL 262 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~ 262 (1079)
..-. +|..|. |=+..+++-++-.|+++|++|-... +++ -.+.++.+.|.+.+..+.|+|+.++..+.+..
T Consensus 102 lalL-----aINtl~-KDl~d~Np~IRaLALRtLs~Ir~~~---i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 102 KALL-----AVNTFL-QDTTNSSPVVRALAVRTMMCIRVSS---VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred HHHH-----HHHHHH-HHcCCCCHHHHHHHHHHHHcCCcHH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 5433 456777 4666788999999999999985422 222 22445666677778999999999999998765
Q ss_pred CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHH
Q 001429 263 PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGL 342 (1079)
Q Consensus 263 ~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~a 342 (1079)
|. .....+.++.|..+|...|..|+.+|+.+|..|... ++..++. ..+.+.+|++.|... +.-.+..+
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~---~~~~l~l--~~~~~~~Ll~~L~e~-----~EW~Qi~I 239 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY---GSEKIES--SNEWVNRLVYHLPEC-----NEWGQLYI 239 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh---CchhhHH--HHHHHHHHHHHhhcC-----ChHHHHHH
Confidence 42 223456889999999999999999999999999865 4444432 345567777777543 33344556
Q ss_pred HHHHHHHhcCCC---CChHHHHHHhhccCC
Q 001429 343 IGLLVKISSGSI---LNIGSVLKDILSTYD 369 (1079)
Q Consensus 343 lr~L~nlas~s~---~gi~~~L~~lL~~~~ 369 (1079)
+++|..-.-.++ ..++..+...|.+.+
T Consensus 240 L~lL~~y~P~~~~e~~~il~~l~~~Lq~~N 269 (746)
T PTZ00429 240 LELLAAQRPSDKESAETLLTRVLPRMSHQN 269 (746)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHhcCCC
Confidence 666543221111 345555555555544
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.2e-06 Score=96.14 Aligned_cols=267 Identities=11% Similarity=0.092 Sum_probs=200.4
Q ss_pred hccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhHHHhCC
Q 001429 113 LSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE-TNPDIMLLAVRAITYLCDIFPRSSGLLVRHD 191 (1079)
Q Consensus 113 L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~-~~~elq~~A~~aLtNIa~~~p~~~~~VV~~G 191 (1079)
+.+..+...-+.+|.+|..+. .+.++ +-.......+|.+|... ++.++-....+++..-+-+.....+.+++.+
T Consensus 115 la~~~~~~~l~ksL~al~~lt-~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLT-HKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhh-cCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 455557778888888885542 22222 22445566778888643 3467766667777776666677788999999
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC------------CcchhccCcccchhhccccC-ChHHHHHHHHHHHHh
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALEKISRDQ------------PHACLEGGAIMAALTYIDFF-STSIQRVALSTVANI 258 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~------------~~~Il~~G~L~~LL~lLd~~-~~~vqr~A~~~lsNl 258 (1079)
+.|.+.+-|...+..++.....|++..+..+. +..|.+.|++..|...+.-+ ++++...++.+++.+
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 99999977777666789999999999998763 13588899999998888755 788888999999888
Q ss_pred hcCCCCCchhhhhccHHHHHHhhcc-CCHHH---HHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhc-CCCCCC
Q 001429 259 CKKLPSECPSHLMEAVPILSNLLQY-EDRQL---VESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLN-LNSRTT 333 (1079)
Q Consensus 259 c~~~~~~~~~~v~~vlP~L~~LL~~-~D~~V---~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~-~~~~~~ 333 (1079)
+-+.+--......+.+.+|..++.+ ++..+ .+.+|..|..|+. ++..-..|++.|..+.++.++. +.+
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~gg~~~ii~l~~~h~~--- 342 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKGGLDKIITLALRHSD--- 342 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhcChHHHHHHHHHcCC---
Confidence 7654333323446889999999986 55544 4566777777764 5677788999999999999875 433
Q ss_pred CCccHHHHHHHHHHHHhcCCC--------CChHHHHHHhhccCC------CCccchhhhhccCChHHHHHHHH
Q 001429 334 LSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYD------LSHGMSSPHMVDGHCNQVHEVLK 392 (1079)
Q Consensus 334 ~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~------~e~~w~lsni~ag~~~qi~~vi~ 392 (1079)
++.++..++-+++.||--+| .|+.+...+.|+-.. +.+||.+-||+.+..++-.-++.
T Consensus 343 -~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~ 414 (461)
T KOG4199|consen 343 -DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA 414 (461)
T ss_pred -ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh
Confidence 78899999999999998888 899999888887543 47899999999888887665554
No 26
>PRK09687 putative lyase; Provisional
Probab=98.59 E-value=1.1e-06 Score=98.38 Aligned_cols=218 Identities=15% Similarity=0.081 Sum_probs=159.4
Q ss_pred HHhc-CCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001429 96 RRRS-SSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAIT 174 (1079)
Q Consensus 96 r~l~-~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLt 174 (1079)
++|+ .|....+..+..-+++. |+..+..|++.|+++ ...+.. ...++|.|..++..+.++.|+..|+.+|+
T Consensus 45 ~aL~~~~~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~l---g~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG 116 (280)
T PRK09687 45 RVLQLRGGQDVFRLAIELCSSK-NPIERDIGADILSQL---GMAKRC----QDNVFNILNNLALEDKSACVRASAINATG 116 (280)
T ss_pred HHHHhcCcchHHHHHHHHHhCC-CHHHHHHHHHHHHhc---CCCccc----hHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 3444 34455566666655555 999999999999884 111110 23468888888554447999999999999
Q ss_pred HhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHH
Q 001429 175 YLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALST 254 (1079)
Q Consensus 175 NIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~ 254 (1079)
++....+... ..++..|. .++..++..++..++++|++|.. ..+++.|+.+|...+..+...|+++
T Consensus 117 ~~~~~~~~~~-----~~a~~~l~-~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~a 182 (280)
T PRK09687 117 HRCKKNPLYS-----PKIVEQSQ-ITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_pred cccccccccc-----hHHHHHHH-HHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9975433211 12445565 36666789999999999998743 2367889999988888899999999
Q ss_pred HHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCC
Q 001429 255 VANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTL 334 (1079)
Q Consensus 255 lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~ 334 (1079)
+++++.+. ..++|.|..+|...|..|+..|.|+|..+-+ + .+++.|++.|.++
T Consensus 183 Lg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----~---------~av~~Li~~L~~~----- 235 (280)
T PRK09687 183 LNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-----K---------RVLSVLIKELKKG----- 235 (280)
T ss_pred HhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-----h---------hHHHHHHHHHcCC-----
Confidence 99983321 2568899999999999999999999998643 2 4688999999865
Q ss_pred CccHHHHHHHHHHHHhcCCCCChHHHHHHhhcc
Q 001429 335 SQPIYYGLIGLLVKISSGSILNIGSVLKDILST 367 (1079)
Q Consensus 335 ~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~ 367 (1079)
. +...++.+||.|-. ...++.|..++..
T Consensus 236 ~--~~~~a~~ALg~ig~---~~a~p~L~~l~~~ 263 (280)
T PRK09687 236 T--VGDLIIEAAGELGD---KTLLPVLDTLLYK 263 (280)
T ss_pred c--hHHHHHHHHHhcCC---HhHHHHHHHHHhh
Confidence 2 45578888888854 2578888888863
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.53 E-value=1.9e-05 Score=102.39 Aligned_cols=276 Identities=14% Similarity=0.128 Sum_probs=190.7
Q ss_pred CchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 001429 102 DHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP 181 (1079)
Q Consensus 102 ~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p 181 (1079)
....+..|+..|+.. |+.++..|+..|.++- ...++|.|+..|+++ +++++..|+.+|..|.+..+
T Consensus 619 ~~~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 619 DAPSVAELAPYLADP-DPGVRRTAVAVLTETT------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred cchhHHHHHHHhcCC-CHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC
Confidence 455778899999876 9999999999998752 235789999999887 69999999999999865332
Q ss_pred cchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 182 RSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 182 ~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
..+.|.. +|..++..++..|+.+|+.+.... ...++.+|...+..+++.|++++..+-
T Consensus 685 ----------~~~~L~~-~L~~~d~~VR~~A~~aL~~~~~~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 685 ----------PAPALRD-HLGSPDPVVRAAALDVLRALRAGD---------AALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred ----------chHHHHH-HhcCCCHHHHHHHHHHHHhhccCC---------HHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 2367774 777889999999999999985322 235677888888899999999998751
Q ss_pred CCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHH
Q 001429 262 LPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYG 341 (1079)
Q Consensus 262 ~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~ 341 (1079)
..+.|..+|.+++..|+..++.+|..+... . .+.++.|..++... ++.+...
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---~---------~~~~~~L~~ll~D~-----d~~VR~a 794 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAG---G---------APAGDAVRALTGDP-----DPLVRAA 794 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc---c---------chhHHHHHHHhcCC-----CHHHHHH
Confidence 124567789999999999999999998654 1 23367888888876 6778889
Q ss_pred HHHHHHHHhcCCCCChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccCh
Q 001429 342 LIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRP 421 (1079)
Q Consensus 342 alr~L~nlas~s~~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p 421 (1079)
+++.|+.+.. +..+...|...|.... |.+- .+.+..+.. +.. +
T Consensus 795 A~~aLg~~g~--~~~~~~~l~~aL~d~d----~~VR----------~~Aa~aL~~----l~~-----------------~ 837 (897)
T PRK13800 795 ALAALAELGC--PPDDVAAATAALRASA----WQVR----------QGAARALAG----AAA-----------------D 837 (897)
T ss_pred HHHHHHhcCC--cchhHHHHHHHhcCCC----hHHH----------HHHHHHHHh----ccc-----------------c
Confidence 9999998732 2223345666665432 3221 112221111 111 0
Q ss_pred HHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHH
Q 001429 422 DLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIA 499 (1079)
Q Consensus 422 ~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~ 499 (1079)
..++.|+..+. ..+..||+.++++|.++ ..++.... .|...|...|..+-..|.+.+
T Consensus 838 --------~a~~~L~~~L~-D~~~~VR~~A~~aL~~~--~~~~~a~~----------~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 838 --------VAVPALVEALT-DPHLDVRKAAVLALTRW--PGDPAARD----------ALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred --------chHHHHHHHhc-CCCHHHHHHHHHHHhcc--CCCHHHHH----------HHHHHHhCCCHHHHHHHHHHH
Confidence 23466777765 56899999999999996 23444322 233345555555544554444
No 28
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=2e-05 Score=94.54 Aligned_cols=405 Identities=13% Similarity=0.147 Sum_probs=247.2
Q ss_pred CCCCCchhhhHHHHHHHhcCC-------C-chhHHHHHHHhccCCChHHHHHHHHHHHHHHh------ccCCCchh-hhh
Q 001429 81 SDDAEPRHRGLRELQRRRSSS-------D-HGKLRSILACLSEDTDPSRHITSLTELCEVLS------FAMEDSLS-SMM 145 (1079)
Q Consensus 81 ~~~~~~~~~~l~~~~r~l~~~-------~-~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs------~~~~~~~~-~~~ 145 (1079)
+.|...+.-+++=+.|-++-. . ..-+..-+..++++ ++.+.+.|...-+.+-- ++-....+ +.+
T Consensus 228 ~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 556666666777776666511 1 23455566677877 77888888766554321 11111011 111
Q ss_pred ----------ccCcHHHHHHhhcCC-CCH-----HHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHH
Q 001429 146 ----------ADSLSPVLVKLARHE-TNP-----DIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA 209 (1079)
Q Consensus 146 ----------~~g~Vp~LV~lL~~~-~~~-----elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~ 209 (1079)
..+++|.|+++|... +++ .+-..|.-||.-++...- +.+|. .++| +++.=++.++-.-+
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~-~Vl~-Fiee~i~~pdwr~r 381 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVP-HVLP-FIEENIQNPDWRNR 381 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc---ccchh-hhHH-HHHHhcCCcchhhh
Confidence 237899999999763 111 256678888887776332 33443 3344 44334556677778
Q ss_pred HHHHHHHHHhhccC-Cc--chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCc--hhhhhccHHHHHHhhccC
Q 001429 210 EQCLQALEKISRDQ-PH--ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC--PSHLMEAVPILSNLLQYE 284 (1079)
Q Consensus 210 Eqal~aL~nIs~d~-~~--~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~--~~~v~~vlP~L~~LL~~~ 284 (1079)
|.|+-|+|.|-.+- +. .-+-.++++.++.++......+.+++.|++..+|.+.+... .......++.|..-|+ +
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-D 460 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-D 460 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-h
Confidence 88999999986542 21 13446789999999887788889999999999999987543 2334567777777776 4
Q ss_pred CHHHHHHHHHHHHHHHhccCC-CHHH-HHHHHhCCchHHHHH-hhcCCCCCC-CCccHHHHHHHHHHHHhcCCCCChHHH
Q 001429 285 DRQLVESVAICLIKIAEQLSQ-SSQM-LDEVCSHGLINQTTH-LLNLNSRTT-LSQPIYYGLIGLLVKISSGSILNIGSV 360 (1079)
Q Consensus 285 D~~V~~~A~~als~I~~~~~~-~~e~-i~~lv~~gll~~Lv~-LL~~~~~~~-~~~~i~~~alr~L~nlas~s~~gi~~~ 360 (1079)
.++|..++||++.++++.+.. .++. .....+ ...+.++. ||...+... -..+..+.+-.+|+.|...++-.+.+.
T Consensus 461 ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 461 EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 678999999999999976310 0000 000111 23333443 332211100 134677789999999999988333333
Q ss_pred HHHhhccCCC--Cccchhhhh-ccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHH
Q 001429 361 LKDILSTYDL--SHGMSSPHM-VDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQ 437 (1079)
Q Consensus 361 L~~lL~~~~~--e~~w~lsni-~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~ 437 (1079)
+.++...-.. +-+.. +++ ....++|..++=.++++.|-.+..- -+..+......++-+|+.
T Consensus 540 v~~~~l~il~kl~q~i~-~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk---------------~~~~~~~~~d~iM~lflr 603 (859)
T KOG1241|consen 540 VQKLTLVILEKLDQTIS-SQILSLADRAQLNELQSLLCNTLQSIIRK---------------VGSDIREVSDQIMGLFLR 603 (859)
T ss_pred HHHHHHHHHHHHHHHHH-HHhccHhhHHHHHHHHHHHHHHHHHHHHH---------------ccccchhHHHHHHHHHHH
Confidence 3222211100 11111 232 2446677766666666555433321 011234455667778888
Q ss_pred HHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhh-ccCChhHHHHHHHHHHHHHHhhhHHHHH
Q 001429 438 VVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVF-TRKDHHVLILALEIAEMILQKLSDTFLN 512 (1079)
Q Consensus 438 v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL-~~~d~~~l~~aLq~~e~Ll~k~p~~~~~ 512 (1079)
+|.+...--|.-+++.++.-+++.......+++=. +..||..=| +..|..+...+.-++--|..-+.+.|.+
T Consensus 604 i~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~---f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~p 676 (859)
T KOG1241|consen 604 IFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPA---FKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILP 676 (859)
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHH---HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99876667789999999999999888877777653 335566666 5677888778888787777777666654
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=98.33 E-value=0.0002 Score=89.92 Aligned_cols=301 Identities=15% Similarity=0.124 Sum_probs=203.4
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHH-HHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc
Q 001429 147 DSLSPVLVKLARHETNPDIMLLAVR-AITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH 225 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~~~elq~~A~~-aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~ 225 (1079)
.|=+-.|-+.|++. +..-+.+|.+ .+++++-|. +... ..+-.+ ++..+.+.+++.-+--.|.+++...|+
T Consensus 31 kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~-DvS~------LF~dVv-k~~~S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGR-DVSY------LFVDVV-KLAPSTDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCC-CchH------HHHHHH-HHhCCCCHHHHHHHHHHHHHHcccChH
Confidence 45566677777776 4555566655 566666663 3222 345566 588899999999999999999887776
Q ss_pred -chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccC
Q 001429 226 -ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLS 304 (1079)
Q Consensus 226 -~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~ 304 (1079)
+++- +..+.+-+...+..++-.|+.+++++.. ..++..+++.+.+.|.+.++.|++.|+.|+.+|-..
T Consensus 102 lalLa---INtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-- 170 (746)
T PTZ00429 102 KALLA---VNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-- 170 (746)
T ss_pred HHHHH---HHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--
Confidence 3443 4445566666677888889999998743 356677899999999999999999999999999654
Q ss_pred CCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCC---ChHHHHHHhhccCCCCccchhhhhcc
Q 001429 305 QSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSIL---NIGSVLKDILSTYDLSHGMSSPHMVD 381 (1079)
Q Consensus 305 ~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~---gi~~~L~~lL~~~~~e~~w~lsni~a 381 (1079)
+++ .+.+.|+++.|.++|... ++.++..|+.+|..|...++. -..+.+.+++..-..-.-|.
T Consensus 171 -~pe---lv~~~~~~~~L~~LL~D~-----dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~------ 235 (746)
T PTZ00429 171 -DMQ---LFYQQDFKKDLVELLNDN-----NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWG------ 235 (746)
T ss_pred -Ccc---cccccchHHHHHHHhcCC-----CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHH------
Confidence 553 334678999999999866 788899999999999876651 11233333333222112343
Q ss_pred CChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 001429 382 GHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYL 461 (1079)
Q Consensus 382 g~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~ 461 (1079)
|+ .+++++...-|. +.+.+..++..+.|. +. +.+..|--+|+.+++++..+
T Consensus 236 ----Qi-~IL~lL~~y~P~-------------------~~~e~~~il~~l~~~----Lq-~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 236 ----QL-YILELLAAQRPS-------------------DKESAETLLTRVLPR----MS-HQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred ----HH-HHHHHHHhcCCC-------------------CcHHHHHHHHHHHHH----hc-CCCHHHHHHHHHHHHHhcCc
Confidence 22 355544433221 122234444455553 33 46899999999999999988
Q ss_pred CCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 001429 462 SKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSF 514 (1079)
Q Consensus 462 ~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f 514 (1079)
++++.+..+++.. +..+-.+ .++++.+=+.+|+-+..|.++.|..|...+
T Consensus 287 ~~~~~~~~~~~rl--~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~ 336 (746)
T PTZ00429 287 CSQELIERCTVRV--NTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNL 336 (746)
T ss_pred CCHHHHHHHHHHH--HHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 7766665554321 1222223 456777778999999999999998776543
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.31 E-value=2.6e-05 Score=95.13 Aligned_cols=252 Identities=22% Similarity=0.192 Sum_probs=173.8
Q ss_pred hhHHHHHHHhcCC--CchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHH
Q 001429 89 RGLRELQRRRSSS--DHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIM 166 (1079)
Q Consensus 89 ~~l~~~~r~l~~~--~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq 166 (1079)
.+++.++.....| .+.-+..++..+.+. |......+--.+..++. .+++ .... ++..|.+=|.++ |+.++
T Consensus 25 ~~l~kli~~~~~G~~~~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~-~~~~-~~~l----~~n~l~kdl~~~-n~~~~ 96 (526)
T PF01602_consen 25 EALKKLIYLMMLGYDISFLFMEVIKLISSK-DLELKRLGYLYLSLYLH-EDPE-LLIL----IINSLQKDLNSP-NPYIR 96 (526)
T ss_dssp HHHHHHHHHHHTT---GSTHHHHHCTCSSS-SHHHHHHHHHHHHHHTT-TSHH-HHHH----HHHHHHHHHCSS-SHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHhCCC-CHHHHHHHHHHHHHHhh-cchh-HHHH----HHHHHHHhhcCC-CHHHH
Confidence 3455554433333 366777788777765 88777777777755432 2222 1111 466677777777 69999
Q ss_pred HHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChH
Q 001429 167 LLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTS 246 (1079)
Q Consensus 167 ~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~ 246 (1079)
..|.++|+++. .++....+ +|.+. +++..+.+.++.-|+-|+.+|.+..|..+-.. .++.+.++|...+..
T Consensus 97 ~lAL~~l~~i~--~~~~~~~l-----~~~v~-~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~ 167 (526)
T PF01602_consen 97 GLALRTLSNIR--TPEMAEPL-----IPDVI-KLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPS 167 (526)
T ss_dssp HHHHHHHHHH---SHHHHHHH-----HHHHH-HHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHH
T ss_pred HHHHhhhhhhc--ccchhhHH-----HHHHH-HHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcch
Confidence 99999999987 35544443 56666 58888899999999999999998877766555 678888888777888
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhh
Q 001429 247 IQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLL 326 (1079)
Q Consensus 247 vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL 326 (1079)
++..|+.++..+ +..+......+...+..|.+++...++-++..+..++.+++.. .++.... ..+++.+..+|
T Consensus 168 V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~---~~~~~~~---~~~i~~l~~~l 240 (526)
T PF01602_consen 168 VVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM---EPEDADK---NRIIEPLLNLL 240 (526)
T ss_dssp HHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS---SHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC---ChhhhhH---HHHHHHHHHHh
Confidence 999999999888 2222111145666777778878888998988888888887754 4443321 34567788888
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHhcCCC--CChHHHHHHhhccCC
Q 001429 327 NLNSRTTLSQPIYYGLIGLLVKISSGSI--LNIGSVLKDILSTYD 369 (1079)
Q Consensus 327 ~~~~~~~~~~~i~~~alr~L~nlas~s~--~gi~~~L~~lL~~~~ 369 (1079)
.+. ++.+...+++++..+....+ ..+++.|..+|.+..
T Consensus 241 ~s~-----~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~ 280 (526)
T PF01602_consen 241 QSS-----SPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSD 280 (526)
T ss_dssp HHH-----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSS
T ss_pred hcc-----ccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhccc
Confidence 765 67787888888887655444 567777888887433
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.30 E-value=1.1e-05 Score=98.25 Aligned_cols=215 Identities=19% Similarity=0.170 Sum_probs=161.5
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
....+...|++. ++..+-.|++.|+++- +.+. ...++|.+.++|.++ ++.++..|+-|+..+....|+..
T Consensus 80 ~~n~l~kdl~~~-n~~~~~lAL~~l~~i~---~~~~-----~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~~ 149 (526)
T PF01602_consen 80 IINSLQKDLNSP-NPYIRGLALRTLSNIR---TPEM-----AEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDLV 149 (526)
T ss_dssp HHHHHHHHHCSS-SHHHHHHHHHHHHHH----SHHH-----HHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCCH
T ss_pred HHHHHHHhhcCC-CHHHHHHHHhhhhhhc---ccch-----hhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHHH
Confidence 445566667776 8999999999999863 2222 134689999999998 69999999999999999888754
Q ss_pred hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc--hhccCcccchhhccccCChHHHHHHHHHHHHhhcCC
Q 001429 185 GLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA--CLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKL 262 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~--Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~ 262 (1079)
.. . .+|.|. +|+...++.+...|+.++..| +..+.. -+-...+..+.+++...+.-.|..++.++.++++..
T Consensus 150 ~~---~-~~~~l~-~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 150 ED---E-LIPKLK-QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp HG---G-HHHHHH-HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred HH---H-HHHHHh-hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 32 2 478888 588878899999999999999 222222 111223334444456678889999999999988654
Q ss_pred CCCchhhh--hccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHH
Q 001429 263 PSECPSHL--MEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYY 340 (1079)
Q Consensus 263 ~~~~~~~v--~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~ 340 (1079)
+ ... ..+++.+..+|++.+..|+-+|+.++.++... +. +-..+++.|+.+|.+. ++++..
T Consensus 224 ~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~----~~-----~~~~~~~~L~~lL~s~-----~~nvr~ 285 (526)
T PF01602_consen 224 P----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS----PE-----LLQKAINPLIKLLSSS-----DPNVRY 285 (526)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----HH-----HHHHHHHHHHHHHTSS-----SHHHHH
T ss_pred h----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----hH-----HHHhhHHHHHHHhhcc-----cchheh
Confidence 2 223 67899999999999999999999999988753 33 2234678999999966 677888
Q ss_pred HHHHHHHHHhcCC
Q 001429 341 GLIGLLVKISSGS 353 (1079)
Q Consensus 341 ~alr~L~nlas~s 353 (1079)
.+++.|..|+...
T Consensus 286 ~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 286 IALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHCCHC
T ss_pred hHHHHHHHhhccc
Confidence 8999999988776
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00011 Score=92.49 Aligned_cols=348 Identities=17% Similarity=0.160 Sum_probs=216.8
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
...++.+=..|.+. +...+..|+.+|+-+.-++. +.+.+. -..++|..+..|+++| |.+|..||-||+-|+...+.
T Consensus 347 p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~-~~m~~~-l~~Il~~Vl~~l~Dph-prVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 347 PPLFEALEAMLQST-EWKERHAALLALSVIAEGCS-DVMIGN-LPKILPIVLNGLNDPH-PRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH-HHHHHH-HHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhhhhhcH
Confidence 34455555556776 99999999999988765543 333331 2468999999999995 99999999999999998887
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhc---cCcccchhhcccc-CChHHHHHHHHHHHHh
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLE---GGAIMAALTYIDF-FSTSIQRVALSTVANI 258 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~---~G~L~~LL~lLd~-~~~~vqr~A~~~lsNl 258 (1079)
.++.--..-.+|.|+..+-......+.-.|..||-|.+.+++..++. -+.+..+++.|.+ .+..+|-.++.+|+-+
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 77666666677888875555567899999999999999999887765 3444435555544 4778899999999988
Q ss_pred hcCCCCCchhhhhccHHHHHHhhccCC----HHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC--CCC
Q 001429 259 CKKLPSECPSHLMEAVPILSNLLQYED----RQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN--SRT 332 (1079)
Q Consensus 259 c~~~~~~~~~~v~~vlP~L~~LL~~~D----~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~--~~~ 332 (1079)
+......-..+...+||.|.++|+..+ ..++-.+.-|++-|.... ..+..- +....+++++... +..
T Consensus 503 A~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV--Gke~F~-----~~a~eliqll~~~~~~~~ 575 (1075)
T KOG2171|consen 503 ADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV--GKEKFL-----PLAEELIQLLLELQGSDQ 575 (1075)
T ss_pred HHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh--hhhhhh-----HhHHHHHHHHHhhcccch
Confidence 765444334566789999999998765 335556566776665432 112211 1233444444321 111
Q ss_pred CCCccHHHHHHHHHHHHhcCCC---CChHHHH-HHhhccCC--C---------------CccchhhhhccCCh-------
Q 001429 333 TLSQPIYYGLIGLLVKISSGSI---LNIGSVL-KDILSTYD--L---------------SHGMSSPHMVDGHC------- 384 (1079)
Q Consensus 333 ~~~~~i~~~alr~L~nlas~s~---~gi~~~L-~~lL~~~~--~---------------e~~w~lsni~ag~~------- 384 (1079)
..+.....-.+-..+++|+.=. ..+++.+ .-++...+ + .-.|..-++ |.+
T Consensus 576 ~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~--~~~e~~~I~T 653 (1075)
T KOG2171|consen 576 DDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVEL--GDKENIGIRT 653 (1075)
T ss_pred hhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhcc--CCceeeeeee
Confidence 2234455567777788877644 4444432 22222111 0 112322111 111
Q ss_pred ----------HHHHHH-HHHhhcccccccCc-c------ch-hhccccch--------------hcccChHHHHHHHHhH
Q 001429 385 ----------NQVHEV-LKLLNELLPTSVGD-Q------CV-QLVLDKQS--------------FLVDRPDLLQNFGMDI 431 (1079)
Q Consensus 385 ----------~qi~~v-i~li~~LlP~l~~~-~------~~-~~~~~r~~--------------~l~~~p~~~~~f~~~l 431 (1079)
+++.+. +.+-.+..|.+.+. + .+ ..+.-|.. -....|..+......+
T Consensus 654 svl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~ 733 (1075)
T KOG2171|consen 654 SVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAI 733 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 111111 11112333433332 0 00 00001111 1136688888888889
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhccCC
Q 001429 432 LPMLIQVVNSGANIFVCYGCLSVINKLVYLSK 463 (1079)
Q Consensus 432 lp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~ 463 (1079)
+|.+++....-.+.+|-...+.++.+++.-+.
T Consensus 734 ~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G 765 (1075)
T KOG2171|consen 734 RPALIKALEEEPETEVLSEILESFAECIEVMG 765 (1075)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcC
Confidence 99999999888899999999999999887543
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.28 E-value=9.1e-05 Score=96.11 Aligned_cols=219 Identities=12% Similarity=0.069 Sum_probs=159.8
Q ss_pred CCCCCchhhhHHHHHHHhc-CCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcC
Q 001429 81 SDDAEPRHRGLRELQRRRS-SSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARH 159 (1079)
Q Consensus 81 ~~~~~~~~~~l~~~~r~l~-~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~ 159 (1079)
++|...+..+++ .|+ .+....++.|+..|+.+ |+.++..|+..|.++.... ...+.|...|.+
T Consensus 632 D~d~~VR~~Av~----~L~~~~~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~~ 695 (897)
T PRK13800 632 DPDPGVRRTAVA----VLTETTPPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVL-----------PPAPALRDHLGS 695 (897)
T ss_pred CCCHHHHHHHHH----HHhhhcchhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhcC
Confidence 455554444443 333 33456678888888665 9999999999998863210 124678888988
Q ss_pred CCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhc
Q 001429 160 ETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTY 239 (1079)
Q Consensus 160 ~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~l 239 (1079)
+ ++.++..|+.+|..+-. +..+.|+ +++..++..++..|+++|+.+-. .+.++.+
T Consensus 696 ~-d~~VR~~A~~aL~~~~~------------~~~~~l~-~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~~ 750 (897)
T PRK13800 696 P-DPVVRAAALDVLRALRA------------GDAALFA-AALGDPDHRVRIEAVRALVSVDD-----------VESVAGA 750 (897)
T ss_pred C-CHHHHHHHHHHHHhhcc------------CCHHHHH-HHhcCCCHHHHHHHHHHHhcccC-----------cHHHHHH
Confidence 7 79999999999998742 2234566 47888999999999999998721 2446777
Q ss_pred cccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCch
Q 001429 240 IDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLI 319 (1079)
Q Consensus 240 Ld~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll 319 (1079)
+...+..+++.|+.++..+....+ ..+|.|..++..+|..|+..|+.+|..+.+. + .++
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----~---------~~~ 809 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP----P---------DDV 809 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----c---------hhH
Confidence 888889999999999999865421 2378899999999999999999999988532 1 123
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCC
Q 001429 320 NQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYD 369 (1079)
Q Consensus 320 ~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~ 369 (1079)
..++..|.+. +..+...++++|+.+.. ...++.|..+|....
T Consensus 810 ~~l~~aL~d~-----d~~VR~~Aa~aL~~l~~---~~a~~~L~~~L~D~~ 851 (897)
T PRK13800 810 AAATAALRAS-----AWQVRQGAARALAGAAA---DVAVPALVEALTDPH 851 (897)
T ss_pred HHHHHHhcCC-----ChHHHHHHHHHHHhccc---cchHHHHHHHhcCCC
Confidence 5577777765 56788889999988732 346688888886543
No 34
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.20 E-value=4.8e-05 Score=86.25 Aligned_cols=327 Identities=15% Similarity=0.112 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHhhccC---CcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC---cchhccCcccch
Q 001429 163 PDIMLLAVRAITYLCDIF---PRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAA 236 (1079)
Q Consensus 163 ~elq~~A~~aLtNIa~~~---p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~---~~Il~~G~L~~L 236 (1079)
..+...++.|++-++... ..++...|++|++..|.+ +..+++.++-+|+.++|||||.++. .++++.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq-~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQ-TPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHh-CCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 446667777888776321 234555677899999996 8888899999999999999999863 468999997777
Q ss_pred hhccccC-------ChHHHHHHHHHHHHhhcCCCCC-chhhhhccHHHHHHhhc--cCCHHHHHHHHHHHHHHHhccCCC
Q 001429 237 LTYIDFF-------STSIQRVALSTVANICKKLPSE-CPSHLMEAVPILSNLLQ--YEDRQLVESVAICLIKIAEQLSQS 306 (1079)
Q Consensus 237 L~lLd~~-------~~~vqr~A~~~lsNlc~~~~~~-~~~~v~~vlP~L~~LL~--~~D~~V~~~A~~als~I~~~~~~~ 306 (1079)
+..|+.. .......++-.++|..-+...- ...+..+++|.|..++. .++...-+.....+.++..= -
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~---~ 211 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF---V 211 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH---H
Confidence 7777643 1245667888999987665332 23345789999999854 45555566666666665532 1
Q ss_pred HHHHHH-HHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-------CChHHHHHHhhccCCCCccchhhh
Q 001429 307 SQMLDE-VCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI-------LNIGSVLKDILSTYDLSHGMSSPH 378 (1079)
Q Consensus 307 ~e~i~~-lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~-------~gi~~~L~~lL~~~~~e~~w~lsn 378 (1079)
-+.+-. ..+..+.-.+++||... +.+.+-..++.+|...+..+. .|.++.++.++...+..+
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~----v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t------ 281 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSM----VREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT------ 281 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHh----hccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc------
Confidence 222222 34678888999999754 255666788889998888776 899999999999866422
Q ss_pred hccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 001429 379 MVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKL 458 (1079)
Q Consensus 379 i~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~i 458 (1079)
.++.....++.+++|+-.+..+ +..-..+...|..+ +|+ ..-+. +.|.+..--...+|.|.
T Consensus 282 ----~k~d~~~l~k~~~el~vllltG------DeSMq~L~~~p~~l-~~~-------~sw~~-S~d~~l~t~g~LaigNf 342 (604)
T KOG4500|consen 282 ----KKTDMLNLFKRIAELDVLLLTG------DESMQKLHADPQFL-DFL-------ESWFR-SDDSNLITMGSLAIGNF 342 (604)
T ss_pred ----chHHHHHHHHhhhhHhhhhhcC------chHHHHHhcCcHHH-HHH-------HHHhc-CCchhHHHHHHHHHHhh
Confidence 2333344555556555444432 00111133345422 222 23333 45677777777788877
Q ss_pred hccCCHHHHHHHHhcCCchHHHhhhhcc-----CChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhc
Q 001429 459 VYLSKSDMLIELLKSANIPSFLAGVFTR-----KDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALL 527 (1079)
Q Consensus 459 v~~~~~~~L~~ll~~~~i~s~La~iL~~-----~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~ 527 (1079)
.-. .+...++++..-+-. |-++|.+ .|-...+.+|.++..|+- |-.-+.+|..-||.+.|-...
T Consensus 343 aR~--D~~ci~~v~~~~~nk-L~~~l~~~~~vdgnV~~qhA~lsALRnl~I--Pv~nka~~~~aGvteaIL~~l 411 (604)
T KOG4500|consen 343 ARR--DDICIQLVQKDFLNK-LISCLMQEKDVDGNVERQHACLSALRNLMI--PVSNKAHFAPAGVTEAILLQL 411 (604)
T ss_pred hcc--chHHHHHHHHHHHHH-HHHHHHHhcCCCccchhHHHHHHHHHhccc--cCCchhhccccchHHHHHHHH
Confidence 653 233344444433322 2223332 233456899999999886 444577899999999885543
No 35
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0012 Score=79.89 Aligned_cols=290 Identities=13% Similarity=0.140 Sum_probs=210.4
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCC--CHHHHHHHHHHHHHhhccC-
Q 001429 147 DSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE--YLDVAEQCLQALEKISRDQ- 223 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~--~~dl~Eqal~aL~nIs~d~- 223 (1079)
+.-|+.||.-..+..-++=+..|||+|-.++. .++-.|. +-++++|++ .|..+ +.++...++-++-++....
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~-vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQ-VLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHH-HHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 45688888888777667788899999999986 3444444 456788997 45444 5889999999999987643
Q ss_pred -C------c------------chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchh--hh-hccHHHHHHhh
Q 001429 224 -P------H------------ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPS--HL-MEAVPILSNLL 281 (1079)
Q Consensus 224 -~------~------------~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~--~v-~~vlP~L~~LL 281 (1079)
| . .|.+.+-|..+++++..|+.++.+.|+..++++-+..|..-.. .+ ...+..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 1 1556888999999999999999999999999997766554222 23 34788999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh-CCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC------
Q 001429 282 QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS-HGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI------ 354 (1079)
Q Consensus 282 ~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~-~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~------ 354 (1079)
...-.-|+.+|...|+.++.+ ++ .+|.|+- .++..+|..++...++.. +--++.-|+..|-||.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~---n~-~IQKlVAFENaFerLfsIIeeEGg~d-GgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKD---NS-SIQKLVAFENAFERLFSIIEEEGGLD-GGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred hhhhhhhchhHHHHHHHHHcc---Cc-hHHHHHHHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHhhCcchhhHH
Confidence 988888999999999999976 44 4565554 478999999997543221 22356789999999999876
Q ss_pred --CChHHHHHHhhccC---C-CCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHH-H-
Q 001429 355 --LNIGSVLKDILSTY---D-LSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQ-N- 426 (1079)
Q Consensus 355 --~gi~~~L~~lL~~~---~-~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~-~- 426 (1079)
.+.++.|.++|.-. . ....|.-.-+ .-+..++..+.-|+||--..+ ..+.. +
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv-----~Nv~~~Lqivr~lVsP~Nt~~---------------~~~q~qk~ 310 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRV-----QNVIEALQIVRSLVSPGNTSS---------------ITHQNQKA 310 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHH-----HHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHH
Confidence 78889999888753 2 3356754321 013444555556666644321 11111 1
Q ss_pred -HHHhHHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccCCHHH
Q 001429 427 -FGMDILPMLIQVVNSG-ANIFVCYGCLSVINKLVYLSKSDM 466 (1079)
Q Consensus 427 -f~~~llp~Li~v~~ss-~~~~VR~~~l~ai~~iv~~~~~~~ 466 (1079)
+-..++-+|+.++.++ +-.+|+.+++.++..+|.+.-..+
T Consensus 311 l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ 352 (970)
T KOG0946|consen 311 LVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQ 352 (970)
T ss_pred HHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHH
Confidence 2246888999998888 789999999999999999865444
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.003 Score=79.91 Aligned_cols=394 Identities=14% Similarity=0.196 Sum_probs=234.1
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc----c
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD----I 179 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~----~ 179 (1079)
..+..|+..|.+. |..++.+|...+.++.- ...++|.|..++....+|+++-.|+--+.-++. .
T Consensus 4 ~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~-----------~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~ 71 (1075)
T KOG2171|consen 4 APLEQLLQQLLSP-DNEVRRQAEEALETLAK-----------TEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSR 71 (1075)
T ss_pred hHHHHHHHHhcCC-CchHHHHHHHHHHHhhc-----------ccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhc
Confidence 4577899999888 77888888888865432 112799999999998889997766655555443 2
Q ss_pred CCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhcc----ccCChHHHHHHHHHH
Q 001429 180 FPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYI----DFFSTSIQRVALSTV 255 (1079)
Q Consensus 180 ~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lL----d~~~~~vqr~A~~~l 255 (1079)
.+..++.-+. -.|+..++.-....++.--..++.-|++..-.. .-|-++++| ...+...+-.|+.++
T Consensus 72 l~~e~~~sik----s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~~~~rE~al~il 142 (1075)
T KOG2171|consen 72 LSAEVQQSIK----SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPNPSLRESALLIL 142 (1075)
T ss_pred CCHHHHHHHH----HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 3332222222 223323333345667777777777787754222 344455555 445677888999999
Q ss_pred HHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh--------------------
Q 001429 256 ANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS-------------------- 315 (1079)
Q Consensus 256 sNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~-------------------- 315 (1079)
+++-.-.+.....++.++.+.|.+.+......|+..|..|+..++.-..++.+....+..
T Consensus 143 ~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 143 SSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred HhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 999887777766788999999999999887779999999998887653222332222221
Q ss_pred -CCchHHHHHhhcCC-------------------CCCCCCccHHHHHHHHHHHHhcCCC----------CChHHHHHHhh
Q 001429 316 -HGLINQTTHLLNLN-------------------SRTTLSQPIYYGLIGLLVKISSGSI----------LNIGSVLKDIL 365 (1079)
Q Consensus 316 -~gll~~Lv~LL~~~-------------------~~~~~~~~i~~~alr~L~nlas~s~----------~gi~~~L~~lL 365 (1079)
.+++..|.+++... ....++..+...||.+|..++..-+ .-+++++..++
T Consensus 223 a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 11233333333221 0123455566666666666665533 22333333333
Q ss_pred ccCCCCcc-----------------------------------------------------------chhhhhccCChHH
Q 001429 366 STYDLSHG-----------------------------------------------------------MSSPHMVDGHCNQ 386 (1079)
Q Consensus 366 ~~~~~e~~-----------------------------------------------------------w~lsni~ag~~~q 386 (1079)
+....+.. ++++.|+.|..++
T Consensus 303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~ 382 (1075)
T KOG2171|consen 303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDV 382 (1075)
T ss_pred CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH
Confidence 32211111 2334455566665
Q ss_pred HHHHHHHhhcccccccCccchhhccccchh--------ccc--ChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 001429 387 VHEVLKLLNELLPTSVGDQCVQLVLDKQSF--------LVD--RPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVIN 456 (1079)
Q Consensus 387 i~~vi~li~~LlP~l~~~~~~~~~~~r~~~--------l~~--~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~ 456 (1079)
+...++ .++|.+.+. .....+|-+. +.. .|+..+.+-..+.|.|+....++.+..|+..+..++.
T Consensus 383 m~~~l~---~Il~~Vl~~--l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~ 457 (1075)
T KOG2171|consen 383 MIGNLP---KILPIVLNG--LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALV 457 (1075)
T ss_pred HHHHHH---HHHHHHHhh--cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHH
Confidence 554442 222222221 0011233331 112 2555555667788899999999999999999999999
Q ss_pred HhhccCCHHHHHHHHhcCCchHHHhhhhccCChh-HHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhc
Q 001429 457 KLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHH-VLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALL 527 (1079)
Q Consensus 457 ~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~-~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~ 527 (1079)
|....+..+.|...+... +...+ .+|-+++.+ +...++..+-..-.-..+-|.++|.| +|..+..+.
T Consensus 458 nf~E~~~~~~l~pYLd~l-m~~~l-~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L 525 (1075)
T KOG2171|consen 458 NFSEECDKSILEPYLDGL-MEKKL-LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFL 525 (1075)
T ss_pred HHHHhCcHHHHHHHHHHH-HHHHH-HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHH
Confidence 999999998887665421 11112 223344444 33566666655555555567777766 455555543
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.10 E-value=0.00079 Score=80.49 Aligned_cols=239 Identities=16% Similarity=0.082 Sum_probs=169.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccCCcchh
Q 001429 107 RSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET-NPDIMLLAVRAITYLCDIFPRSSG 185 (1079)
Q Consensus 107 ~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~-~~elq~~A~~aLtNIa~~~p~~~~ 185 (1079)
..++..+... ||..-+.|.....+.+. ++.++...++..|++|.|..+++.++ .++++.+.+-.+...+.+......
T Consensus 12 ~~~l~~L~~~-dpe~lvrai~~~kN~vi-g~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 12 LDLLYRLLHL-DPEQLVRAIYMSKNLVI-GFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHHHhhhcC-CHHHHHHHHHHhcchhh-cCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHH
Confidence 3456666666 78877888888877654 56666566889999999999998773 356665665566667888899999
Q ss_pred HHHhCCChHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCCc--ch---hccCcccchhhccccCChHHHHHHHHHHHHhh
Q 001429 186 LLVRHDAVPALCQRLKAIEY-LDVAEQCLQALEKISRDQPH--AC---LEGGAIMAALTYIDFFSTSIQRVALSTVANIC 259 (1079)
Q Consensus 186 ~VV~~GaIp~Lv~kLl~~~~-~dl~Eqal~aL~nIs~d~~~--~I---l~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc 259 (1079)
.|++++.+|.|.+ |+...+ ..+.+-++.+|.+|-.-.+. .+ .....+..+-.++......+++.-+..++++|
T Consensus 90 svL~~~~ll~Ll~-LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s 168 (678)
T KOG1293|consen 90 SVLRIIELLKLLQ-LLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS 168 (678)
T ss_pred HHHHHhhHHHHHH-HhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence 9999999999995 776666 89999999999999755422 11 12222332222222234456777888889999
Q ss_pred cCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHH----HHHHHhCCchHH--HHHhhcCCCCCC
Q 001429 260 KKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQM----LDEVCSHGLINQ--TTHLLNLNSRTT 333 (1079)
Q Consensus 260 ~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~----i~~lv~~gll~~--Lv~LL~~~~~~~ 333 (1079)
.....+-....+++...+.-++.+-...++..|..|++|-+.-...+++. ...+.+.|+.++ +..|+..+
T Consensus 169 ~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~---- 244 (678)
T KOG1293|consen 169 STKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP---- 244 (678)
T ss_pred ccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC----
Confidence 88755555566788888888888878889999999999533222235543 444556788875 44566555
Q ss_pred CCccHHHHHHHHHHHHhcCC
Q 001429 334 LSQPIYYGLIGLLVKISSGS 353 (1079)
Q Consensus 334 ~~~~i~~~alr~L~nlas~s 353 (1079)
....+...+.+|-++..+|
T Consensus 245 -~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 245 -DFSERLRSLECLVPYLRKS 263 (678)
T ss_pred -CccHHHHHHHHHHHHHhcc
Confidence 3445578889999999888
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=1.4e-05 Score=100.49 Aligned_cols=202 Identities=12% Similarity=0.067 Sum_probs=149.1
Q ss_pred hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHH-hCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 001429 144 MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLV-RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV-~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d 222 (1079)
+...||+.++|..|.+. ..+++..-+-+|.||.=--....+.|+ +.|-|-.|...-+......-....|.||-|++.+
T Consensus 390 Cs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 77889999999999987 358888888999999644344556666 5789999998777776666677789999999988
Q ss_pred CCc---chh-ccCcccchhhccccC----ChHHHHHHHHHHHHhhcCC----CCCchhhhhccHHHHHHhhccCCHHHHH
Q 001429 223 QPH---ACL-EGGAIMAALTYIDFF----STSIQRVALSTVANICKKL----PSECPSHLMEAVPILSNLLQYEDRQLVE 290 (1079)
Q Consensus 223 ~~~---~Il-~~G~L~~LL~lLd~~----~~~vqr~A~~~lsNlc~~~----~~~~~~~v~~vlP~L~~LL~~~D~~V~~ 290 (1079)
+.. .|. --|+|..|+.+|... ...+.-.|--+|-|+.... +..++..-..+|.+|.+.|.+.--.||.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVS 548 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVS 548 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEee
Confidence 743 343 468888888887542 3333333333333333222 2222333457999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 291 SVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 291 ~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
++|-+|.||... +++..++|.+.|+++-|-+||.+. ..-+......+|.|+...-+
T Consensus 549 NaCGTLWNLSAR---~p~DQq~LwD~gAv~mLrnLIhSK-----hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 549 NACGTLWNLSAR---SPEDQQMLWDDGAVPMLRNLIHSK-----HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred cchhhhhhhhcC---CHHHHHHHHhcccHHHHHHHHhhh-----hhhhhhhHHHHHHHHhcCCc
Confidence 999999999987 899999999999999999999876 44455556666667655543
No 39
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=2.6e-05 Score=98.22 Aligned_cols=221 Identities=15% Similarity=0.093 Sum_probs=162.2
Q ss_pred hhccCcHHHHHHhhcCC-----------CCHHHHHHHHHHHHHhhccCCcchhH-HHhCCChHHHHHHhhcCCCHHHHHH
Q 001429 144 MMADSLSPVLVKLARHE-----------TNPDIMLLAVRAITYLCDIFPRSSGL-LVRHDAVPALCQRLKAIEYLDVAEQ 211 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~-----------~~~elq~~A~~aLtNIa~~~p~~~~~-VV~~GaIp~Lv~kLl~~~~~dl~Eq 211 (1079)
+-+-|.+.++-+||.-. .+..++..|.-|||||.-|.-..-.. .-..|.|.++|. -|.+...+|..-
T Consensus 335 M~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVA-QL~s~peeL~QV 413 (2195)
T KOG2122|consen 335 MNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVA-QLISAPEELLQV 413 (2195)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHH-HHhcChHHHHHH
Confidence 33456666666655422 12347778999999998664333332 336799999996 566667788888
Q ss_pred HHHHHHHhhcc---CCcchhc-cCcccchhhcc-ccCChHHHHHHHHHHHHhhcCCCCC--chhhhhccHHHHHHhhccC
Q 001429 212 CLQALEKISRD---QPHACLE-GGAIMAALTYI-DFFSTSIQRVALSTVANICKKLPSE--CPSHLMEAVPILSNLLQYE 284 (1079)
Q Consensus 212 al~aL~nIs~d---~~~~Il~-~G~L~~LL~lL-d~~~~~vqr~A~~~lsNlc~~~~~~--~~~~v~~vlP~L~~LL~~~ 284 (1079)
....|.|++=. +-..|++ .|-+.+|...- ........+..+.+|.||..+.... .|-.|-+++-.|+.+|.+.
T Consensus 414 ~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~ 493 (2195)
T KOG2122|consen 414 YASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYE 493 (2195)
T ss_pred HHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcccc
Confidence 88999999843 2234664 67788777763 3345456666666666776654333 4556788999999999876
Q ss_pred ----CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC------
Q 001429 285 ----DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI------ 354 (1079)
Q Consensus 285 ----D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~------ 354 (1079)
--.|++.|--+|-|+..-......+.|.+.++.+|..|++.|.+. +-.++++++.+|.||..-++
T Consensus 494 ~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-----SLTiVSNaCGTLWNLSAR~p~DQq~L 568 (2195)
T KOG2122|consen 494 GQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSARSPEDQQML 568 (2195)
T ss_pred CCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-----ceEEeecchhhhhhhhcCCHHHHHHH
Confidence 356899988888877655555678889999999999999999987 56677789999999999988
Q ss_pred --CChHHHHHHhhccCCC
Q 001429 355 --LNIGSVLKDILSTYDL 370 (1079)
Q Consensus 355 --~gi~~~L~~lL~~~~~ 370 (1079)
.|.+++|..|+.+..+
T Consensus 569 wD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 569 WDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred HhcccHHHHHHHHhhhhh
Confidence 8999999999987654
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.02 E-value=0.0021 Score=73.29 Aligned_cols=258 Identities=9% Similarity=0.058 Sum_probs=167.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC---C---CHHHHHHHHHHHHHhhcc
Q 001429 106 LRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE---T---NPDIMLLAVRAITYLCDI 179 (1079)
Q Consensus 106 l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~---~---~~elq~~A~~aLtNIa~~ 179 (1079)
+.-+.+-.+++ |-.+.....++|.++-+ .|+.....|-..|.-..++++|+.. + +.+.-..++..|.|..-+
T Consensus 89 le~Lrq~psS~-d~ev~~Q~~RaLgNiCy-dn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 89 LELLRQTPSSP-DTEVHEQCFRALGNICY-DNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHhCCCCC-cccHHHHHHHHHhhhhc-cCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 33333334555 66777788899998754 4445555566667666667777643 2 335555778889999999
Q ss_pred CCcchhHHHhCCChHHHHHHhhcCCC--HHHHHHHHHHHHHhh----------------------------cc-------
Q 001429 180 FPRSSGLLVRHDAVPALCQRLKAIEY--LDVAEQCLQALEKIS----------------------------RD------- 222 (1079)
Q Consensus 180 ~p~~~~~VV~~GaIp~Lv~kLl~~~~--~dl~Eqal~aL~nIs----------------------------~d------- 222 (1079)
+.+....+.+.|++|.|. +++.+.. ..+.|-++-..+|+. ++
T Consensus 167 ~~~l~aq~~~~gVl~tL~-~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLA-ITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred cHHHHHHHHhcccHHHHH-HHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999988 5766653 333344443333332 11
Q ss_pred ---------CCc--chhccCcccchhhccccC----C----hHHHHHHHHHHHHhhcCCCCCchhhhhc-cHHHHHHhhc
Q 001429 223 ---------QPH--ACLEGGAIMAALTYIDFF----S----TSIQRVALSTVANICKKLPSECPSHLME-AVPILSNLLQ 282 (1079)
Q Consensus 223 ---------~~~--~Il~~G~L~~LL~lLd~~----~----~~vqr~A~~~lsNlc~~~~~~~~~~v~~-vlP~L~~LL~ 282 (1079)
..- ...+.|-+..++.++... + ....+.++-...-+-.|.+.-+.-+.-+ ++..+...+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 100 123556555555555442 1 1233334444444445543222122222 7788888899
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-------C
Q 001429 283 YEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI-------L 355 (1079)
Q Consensus 283 ~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~-------~ 355 (1079)
++|...+..+..+|+|.+.. ++..-.+++.|.+..|+.+|....+..=+...+..++.+|.|++---+ +
T Consensus 326 S~d~~l~t~g~LaigNfaR~----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~a 401 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARR----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPA 401 (604)
T ss_pred CCchhHHHHHHHHHHhhhcc----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcccc
Confidence 99999999999999999864 566666889999999999996422211255678889999999876543 8
Q ss_pred ChHHHHHHhhccCCC
Q 001429 356 NIGSVLKDILSTYDL 370 (1079)
Q Consensus 356 gi~~~L~~lL~~~~~ 370 (1079)
|+.+++...|+...+
T Consensus 402 GvteaIL~~lk~~~p 416 (604)
T KOG4500|consen 402 GVTEAILLQLKLASP 416 (604)
T ss_pred chHHHHHHHHHhcCC
Confidence 888888888876554
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00027 Score=83.89 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=82.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhcc--CcccchhhccccCChHHHHHHHHHHHHhhcCCCCC-chhh
Q 001429 193 VPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEG--GAIMAALTYIDFFSTSIQRVALSTVANICKKLPSE-CPSH 269 (1079)
Q Consensus 193 Ip~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~--G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~-~~~~ 269 (1079)
+|.|- ..|.++.=-++|.++-|||-||.++-+-.+.+ ..+|.++++|+....-+.+..||+++......-.+ ...+
T Consensus 395 ~PlLk-~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~ 473 (885)
T KOG2023|consen 395 LPLLK-EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY 473 (885)
T ss_pred HHHHH-HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh
Confidence 45555 46667778899999999999998864433332 24667788888878888889999999988765222 3356
Q ss_pred hhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 270 LMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 270 v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
..+++..|.+.+-..+.+|++.||.|++-+-+.
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 677777777777889999999999999987655
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.91 E-value=5e-05 Score=86.75 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=142.8
Q ss_pred CcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCCcchhHHHh------CCChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001429 148 SLSPVLVKLARHE-TNPDIMLLAVRAITYLCDIFPRSSGLLVR------HDAVPALCQRLKAIEYLDVAEQCLQALEKIS 220 (1079)
Q Consensus 148 g~Vp~LV~lL~~~-~~~elq~~A~~aLtNIa~~~p~~~~~VV~------~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs 220 (1079)
+++..++.+|+.- ++++++......+..|....|...+.+.. .....+|+ +++..++.-+.++|+..|..|.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-KLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-HH-S-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence 5667777777766 67999999999999999999988887775 12678888 5899999999999999999998
Q ss_pred ccCCcc--hhccCcccchhhccccC----ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhh-------ccCCHH
Q 001429 221 RDQPHA--CLEGGAIMAALTYIDFF----STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLL-------QYEDRQ 287 (1079)
Q Consensus 221 ~d~~~~--Il~~G~L~~LL~lLd~~----~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL-------~~~D~~ 287 (1079)
..++.. -...+.++.++++|... +...|..|+++++++.+.......-.-.+.++.|..+| +..+..
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 776432 22257788888888752 45678899999999998754443333478899999999 234667
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 288 LVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 288 V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
++-+++.|+--++- +++..+.+.+.++|+.|++++.... ..++..-++.+|.|++..++
T Consensus 214 l~Y~~ll~lWlLSF----~~~~~~~~~~~~~i~~L~~i~~~~~----KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 214 LQYQALLCLWLLSF----EPEIAEELNKKYLIPLLADILKDSI----KEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHH------SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHhc----CHHHHHHHhccchHHHHHHHHHhcc----cchHHHHHHHHHHHHHhccH
Confidence 88888888888874 6889999999999999999998652 56788889999999998877
No 43
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.90 E-value=9.3e-06 Score=63.78 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=36.6
Q ss_pred CcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 181 PRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 181 p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
+++.+.|++.|+||.|+ +|+.+.+.+++++|+|||+||++
T Consensus 2 ~~~~~~i~~~g~i~~Lv-~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLV-QLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHH-HHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHH-HHHcCCCHHHHHHHHHHHHHHhC
Confidence 56788999999999999 59999999999999999999984
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00026 Score=79.86 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=141.6
Q ss_pred CCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHH
Q 001429 116 DTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPA 195 (1079)
Q Consensus 116 ~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~ 195 (1079)
.-++..+..|+..|-.++- +=++...++..|.++.++..|++. +.+++..|+|.|+-.+..+|..-..|++.|+.+.
T Consensus 94 s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 3477788888888866542 223334466777777788899988 6999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCCc---chhccCcccchhhcccc--CChHHHHHHHHHHHHhhcCCCCCchh-h
Q 001429 196 LCQRLKAIEYLDVAEQCLQALEKISRDQPH---ACLEGGAIMAALTYIDF--FSTSIQRVALSTVANICKKLPSECPS-H 269 (1079)
Q Consensus 196 Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~---~Il~~G~L~~LL~lLd~--~~~~vqr~A~~~lsNlc~~~~~~~~~-~ 269 (1079)
|+..|-..++...+.+|+-|++.+.+.++. ..+..+|...|...+.. .+...||+|+..++++........-. .
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 996444455678889999999999999854 46778888888888887 57889999999999998876444322 2
Q ss_pred hhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 270 LMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 270 v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
....--.+.++...-|..+.+.+..++......
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 233444455556667778888888777766654
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0014 Score=79.31 Aligned_cols=398 Identities=14% Similarity=0.136 Sum_probs=224.7
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
..+++=+-+++++. |=.-.-.|+.++.-++-.-.+..+..+ +.+++|.+++++.++ +.-+.-.|+|+|+-|++..|+
T Consensus 363 ~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 363 PHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred hhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchh
Confidence 44555455577766 555555777888877754444444333 568999999999966 566777899999999999998
Q ss_pred chhHHHh-CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCc-----------ccchhhcccc---CChHH
Q 001429 183 SSGLLVR-HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGA-----------IMAALTYIDF---FSTSI 247 (1079)
Q Consensus 183 ~~~~VV~-~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~-----------L~~LL~lLd~---~~~~v 247 (1079)
.+...+. .+.++.|++-|. +.+.++..|.|++.+++...+.+....|. |..|+.--+. ...+.
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNL 517 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNL 517 (859)
T ss_pred hcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhH
Confidence 7766664 456777776443 57899999999999999664433322221 2222222222 23344
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhccHHHHHH---------hhccCCH----HHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001429 248 QRVALSTVANICKKLPSECPSHLMEAVPILSN---------LLQYEDR----QLVESVAICLIKIAEQLSQSSQMLDEVC 314 (1079)
Q Consensus 248 qr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~---------LL~~~D~----~V~~~A~~als~I~~~~~~~~e~i~~lv 314 (1079)
...|-.++.-+.++.+......+.+..+.... .|.+.|. +++..-|.+|..|...+.+ .+..+.
T Consensus 518 R~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~ 594 (859)
T KOG1241|consen 518 RSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS---DIREVS 594 (859)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc---cchhHH
Confidence 55577888888888777666677666555544 4555553 4667778888888766532 222232
Q ss_pred hCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC---C----ChHHHHHHhhccCCCC-ccchhhhhccCChHH
Q 001429 315 SHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI---L----NIGSVLKDILSTYDLS-HGMSSPHMVDGHCNQ 386 (1079)
Q Consensus 315 ~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~---~----gi~~~L~~lL~~~~~e-~~w~lsni~ag~~~q 386 (1079)
+ .++.-+++++.++. +.-+.+.++-+++.++..=. + .+.|.|..=|+..... .|-+.-+++..=..-
T Consensus 595 d-~iM~lflri~~s~~----s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 595 D-QIMGLFLRIFESKR----SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred H-HHHHHHHHHHcCCc----cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 2 24556666776632 55577788888888876533 2 2333333333222211 121111111100000
Q ss_pred HH-HHHHHhhcccccccCccchhhccccch---hcc-------cChHHHHHHHHhHHHHHHHHHhccCc----------H
Q 001429 387 VH-EVLKLLNELLPTSVGDQCVQLVLDKQS---FLV-------DRPDLLQNFGMDILPMLIQVVNSGAN----------I 445 (1079)
Q Consensus 387 i~-~vi~li~~LlP~l~~~~~~~~~~~r~~---~l~-------~~p~~~~~f~~~llp~Li~v~~ss~~----------~ 445 (1079)
+. .++-+..+++..|..+ ......+|.. ++. .--..+..|+..++|+|-++-+...+ -
T Consensus 670 L~~~i~py~d~~mt~Lvq~-Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd 748 (859)
T KOG1241|consen 670 LEDDILPYCDELMTVLVQC-LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVD 748 (859)
T ss_pred HHhhhhhHHHHHHHHHHHH-ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Confidence 00 0011111122222211 0001111111 110 11245677788888888876421222 2
Q ss_pred HHHHHHHHHHHHhhccCC----HHHHHHHHhcCCchHHHhhhhccCCh--hHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001429 446 FVCYGCLSVINKLVYLSK----SDMLIELLKSANIPSFLAGVFTRKDH--HVLILALEIAEMILQKLSDTFLNSFVK 516 (1079)
Q Consensus 446 ~VR~~~l~ai~~iv~~~~----~~~L~~ll~~~~i~s~La~iL~~~d~--~~l~~aLq~~e~Ll~k~p~~~~~~f~r 516 (1079)
++|..|+.+..-|+.+.. ...+...+ ..|-+|+..|-.-+|. .++..++-++.-|..-+|+.....|..
T Consensus 749 ~LRe~~leay~gi~qglk~~~~~~~~~p~v--~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~ 823 (859)
T KOG1241|consen 749 ELREGILEAYTGIIQGLKTHADVMLVQPYV--PHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLD 823 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhcch--HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcc
Confidence 689999999988888654 22222111 1334666665544444 345688888888888877554545544
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0083 Score=73.07 Aligned_cols=322 Identities=16% Similarity=0.147 Sum_probs=212.9
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhccCC-
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE-TNPDIMLLAVRAITYLCDIFP- 181 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~-~~~elq~~A~~aLtNIa~~~p- 181 (1079)
..++.|++.+.+..=+..+..|+..| +-++.. .-..|. ...++.|++.|+.+ .|+++...|.-.++++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgL-Ka~srk---YR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGL-KAFSRK---YREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHH-HHHHHH---HHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 56788888887766677788888877 434421 112343 34578888888765 579999999999999976542
Q ss_pred -----cch----------hHHH-hCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc----chhcc-Ccccchhhcc
Q 001429 182 -----RSS----------GLLV-RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH----ACLEG-GAIMAALTYI 240 (1079)
Q Consensus 182 -----~~~----------~~VV-~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~----~Il~~-G~L~~LL~lL 240 (1079)
+.+ ...+ +.+-|..|++ .++..+.-++..++.-|.++-+..|. +++.. -||..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~-~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQ-SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHH-HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 122 2222 4667888884 88888899999999999999876553 34443 4788899999
Q ss_pred ccCChHHHHHHHHHHHHhhcCCCCC-chhhhhccHHHHHHhhccC---CH-HHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 241 DFFSTSIQRVALSTVANICKKLPSE-CPSHLMEAVPILSNLLQYE---DR-QLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 241 d~~~~~vqr~A~~~lsNlc~~~~~~-~~~~v~~vlP~L~~LL~~~---D~-~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
+.....+.-.|+-.++-+.++.+.- ......+++..|..++..+ |- -|+++++-.+-+|-.. +....+.+.+
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~SNQ~~FrE 252 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NISNQNFFRE 252 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---CcchhhHHhc
Confidence 8755556666888999998886543 3445578999999998753 44 5788888888888865 6666777778
Q ss_pred CCchHHHHHhhcCC--------CCCCCCccHHHHHHHHHHHHhcCCC--------------CChHHHHHHhhccCCC---
Q 001429 316 HGLINQTTHLLNLN--------SRTTLSQPIYYGLIGLLVKISSGSI--------------LNIGSVLKDILSTYDL--- 370 (1079)
Q Consensus 316 ~gll~~Lv~LL~~~--------~~~~~~~~i~~~alr~L~nlas~s~--------------~gi~~~L~~lL~~~~~--- 370 (1079)
.+.||+|..||... +|..-....+..+|.++..+++-+. ++++..|+.+|.+...
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d 332 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD 332 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence 89999999998631 2222223344567777777766443 7889999999988642
Q ss_pred ---CccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHH
Q 001429 371 ---SHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFV 447 (1079)
Q Consensus 371 ---e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~V 447 (1079)
++..++++.+.|+..-=.+..+ --+|..++ +| | .|+-+|+-++.+...++.
T Consensus 333 IltesiitvAevVRgn~~nQ~~F~~---v~~p~~~~--------Pr-------~--------sivvllmsm~ne~q~~~l 386 (970)
T KOG0946|consen 333 ILTESIITVAEVVRGNARNQDEFAD---VTAPSIPN--------PR-------P--------SIVVLLMSMFNEKQPFSL 386 (970)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhh---ccCCCCCC--------Cc-------c--------chhHHHHHHHhccCCchH
Confidence 2333445555555443333333 22333332 11 0 123334444555566777
Q ss_pred HHHHHHHHHHhhc
Q 001429 448 CYGCLSVINKLVY 460 (1079)
Q Consensus 448 R~~~l~ai~~iv~ 460 (1079)
|..|+.++.-.++
T Consensus 387 RcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 387 RCAVLYCFRSYLY 399 (970)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777665555
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0005 Score=77.58 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc---chhccCcccchhh
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH---ACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~---~Il~~G~L~~LL~ 238 (1079)
+++-+..|.--|-++++. -+....++..|+.++++. +++.....+++-|+|+|+.+++.+|. .|++.|++..|+.
T Consensus 96 ~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 456666666667777754 577888999999999995 99999999999999999999999985 5899999999999
Q ss_pred ccccC-ChHHHHHHHHHHHHhhcCCCCCchhh-hhccHHHHHHhhcc--CCHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001429 239 YIDFF-STSIQRVALSTVANICKKLPSECPSH-LMEAVPILSNLLQY--EDRQLVESVAICLIKIAEQLSQSSQMLDEVC 314 (1079)
Q Consensus 239 lLd~~-~~~vqr~A~~~lsNlc~~~~~~~~~~-v~~vlP~L~~LL~~--~D~~V~~~A~~als~I~~~~~~~~e~i~~lv 314 (1079)
.+... +.++.++|+.+++.+.|+.++....+ ..+..-.|..+|++ .+.+.+..|..-+++++.. .....+.+.
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~---~~s~~d~~~ 250 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE---DKSDEDIAS 250 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---hhhhhhHHH
Confidence 99865 66788899999999999976654333 23568999999998 6788889999999999977 333334333
Q ss_pred hCCchHHHHHhhcCC
Q 001429 315 SHGLINQTTHLLNLN 329 (1079)
Q Consensus 315 ~~gll~~Lv~LL~~~ 329 (1079)
..|....+..+..+.
T Consensus 251 ~~~f~~~~~~l~~~l 265 (342)
T KOG2160|consen 251 SLGFQRVLENLISSL 265 (342)
T ss_pred HhhhhHHHHHHhhcc
Confidence 445555555555443
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.68 E-value=0.0038 Score=73.56 Aligned_cols=220 Identities=10% Similarity=0.021 Sum_probs=136.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhcc-----CcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMAD-----SLSPVLVKLARHETNPDIMLLAVRAITYLC 177 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~-----g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa 177 (1079)
..-..-++.-|+.....+...-.+.-+.++|.- ++.....|... ...-.++.+|..+ +.-++..|+.+|+.++
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHH
Confidence 344455555555444555555566667777653 22222334332 3456677788876 6789999999999999
Q ss_pred ccCCcchhHHHhCCChHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCC--cchhccCcccchhhccccCCh--HHHHH--
Q 001429 178 DIFPRSSGLLVRHDAVPALCQRLKAI-EYLDVAEQCLQALEKISRDQP--HACLEGGAIMAALTYIDFFST--SIQRV-- 250 (1079)
Q Consensus 178 ~~~p~~~~~VV~~GaIp~Lv~kLl~~-~~~dl~Eqal~aL~nIs~d~~--~~Il~~G~L~~LL~lLd~~~~--~vqr~-- 250 (1079)
+..+.........-.+.-|+. .+.. ...+.+..|+.+|..+.+... ....+++|++.++..|+.... ..|=.
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~-~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKE-QLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred hcCccccchhHHHHHHHHHHH-HhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 876653222211112234443 3433 357778888899988877653 345688899999999986443 34433
Q ss_pred -HHHHHHHhhcCCCCCchhhhhccHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCC---CHHHHHHHHhCCchHHHHHh
Q 001429 251 -ALSTVANICKKLPSECPSHLMEAVPILSNLLQY-EDRQLVESVAICLIKIAEQLSQ---SSQMLDEVCSHGLINQTTHL 325 (1079)
Q Consensus 251 -A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~-~D~~V~~~A~~als~I~~~~~~---~~e~i~~lv~~gll~~Lv~L 325 (1079)
++|.++--..+.+ ...-.+++|.|++++.. .-.+|+.-++.+|.|+.+.-.. .......+++.|+++ +++.
T Consensus 209 l~lWlLSF~~~~~~---~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~ 284 (429)
T cd00256 209 FCIWLLTFNPHAAE---VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQS 284 (429)
T ss_pred HHHHHHhccHHHHH---hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHH
Confidence 6787775433221 11225799999999876 4678999999999999874110 123456677888765 4454
Q ss_pred hcCC
Q 001429 326 LNLN 329 (1079)
Q Consensus 326 L~~~ 329 (1079)
|...
T Consensus 285 L~~r 288 (429)
T cd00256 285 LEQR 288 (429)
T ss_pred HhcC
Confidence 5433
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.65 E-value=0.004 Score=74.96 Aligned_cols=383 Identities=11% Similarity=0.128 Sum_probs=212.7
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhccC-
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET-NPDIMLLAVRAITYLCDIF- 180 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~-~~elq~~A~~aLtNIa~~~- 180 (1079)
...+.++|..++++ .+..+.-.+....++...-..--++.=....++..++.-++..+ ...+++...-++.|-..+-
T Consensus 715 ~~~v~R~v~~lkde-~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~ 793 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDE-PEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRV 793 (1172)
T ss_pred hHHHHHHhhhhccc-cHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcc
Confidence 56778888888877 33333334444555543211111222223344555555555442 2335555555555544430
Q ss_pred CcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc---CC-cchh-ccCcccchhhccccCChHHHHH---HH
Q 001429 181 PRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD---QP-HACL-EGGAIMAALTYIDFFSTSIQRV---AL 252 (1079)
Q Consensus 181 p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d---~~-~~Il-~~G~L~~LL~lLd~~~~~vqr~---A~ 252 (1079)
.-+...+ +-.++ .+|.+...+++.||+..++.|+.- +. ...+ ..|.+ |..||+.....+.-. |+
T Consensus 794 kpylpqi-----~stiL-~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 794 KPYLPQI-----CSTIL-WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAI 865 (1172)
T ss_pred ccchHHH-----HHHHH-HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHH
Confidence 1111111 22333 467888999999999999999853 21 1122 22322 456776655554444 55
Q ss_pred HHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCC
Q 001429 253 STVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRT 332 (1079)
Q Consensus 253 ~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~ 332 (1079)
.++.|.-. .. .-+.-+++++|.|..+|.+..++|++++.-.+..|++. .++.+-.=-=-.++=.|+++|...
T Consensus 866 kaI~nvig-m~-km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr---gpE~v~aREWMRIcfeLlelLkah--- 937 (1172)
T KOG0213|consen 866 KAIVNVIG-MT-KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR---GPEYVSAREWMRICFELLELLKAH--- 937 (1172)
T ss_pred HHHHHhcc-cc-ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc---CcccCCHHHHHHHHHHHHHHHHHH---
Confidence 55555431 11 12345789999999999999999999999999999997 565321100012445677777755
Q ss_pred CCCccHHHHHHHHHHHHhcCCC-CChHHHHHHhhccCC--CCccchhhhhccCChHHHHHHHHHhhc---ccccccCccc
Q 001429 333 TLSQPIYYGLIGLLVKISSGSI-LNIGSVLKDILSTYD--LSHGMSSPHMVDGHCNQVHEVLKLLNE---LLPTSVGDQC 406 (1079)
Q Consensus 333 ~~~~~i~~~alr~L~nlas~s~-~gi~~~L~~lL~~~~--~e~~w~lsni~ag~~~qi~~vi~li~~---LlP~l~~~~~ 406 (1079)
+..+...+..++|.|+..=. ..++.+|..=|+... .-.|.++. | +++.-.|+ +||.|.++=.
T Consensus 938 --kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtva-I---------aIVaE~c~pFtVLPalmneYr 1005 (1172)
T KOG0213|consen 938 --KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA-I---------AIVAETCGPFTVLPALMNEYR 1005 (1172)
T ss_pred --HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhh-h---------hhhhhhcCchhhhHHHHhhcc
Confidence 56788899999999987633 444444444443211 12344332 1 11111122 3344443211
Q ss_pred hhhccccchh-------cccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC----CHHHHHHHHhcCC
Q 001429 407 VQLVLDKQSF-------LVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS----KSDMLIELLKSAN 475 (1079)
Q Consensus 407 ~~~~~~r~~~-------l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~----~~~~L~~ll~~~~ 475 (1079)
|+..+-..-. +.---+....++-.++|+|-+++.. -|.--|+-+..+|.-|.-++ ..+.+..++.-
T Consensus 1006 tPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD-rD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~-- 1082 (1172)
T KOG0213|consen 1006 TPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNL-- 1082 (1172)
T ss_pred CchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHH--
Confidence 1111111111 1111345567788899999999873 47777888888888777653 45666666632
Q ss_pred chHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHH
Q 001429 476 IPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFF 521 (1079)
Q Consensus 476 i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~ 521 (1079)
..+.||.. -++++......+|-|-.-+.-.-.....-.|.||
T Consensus 1083 ---iWpNIle~-sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFH 1124 (1172)
T KOG0213|consen 1083 ---IWPNILET-SPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFH 1124 (1172)
T ss_pred ---hhhhhcCC-ChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccC
Confidence 24445553 3566677777777776665333333444556665
No 50
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.63 E-value=0.0078 Score=71.64 Aligned_cols=373 Identities=17% Similarity=0.141 Sum_probs=204.7
Q ss_pred HHHHHHhccCCCh--HHHHHHHHHHHHHHhccCCCch-hhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 107 RSILACLSEDTDP--SRHITSLTELCEVLSFAMEDSL-SSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 107 ~~lv~~L~s~~d~--~~ql~Al~~L~~lLs~~~~~~~-~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
+.+++.|..+++. ..-...+..|+++ +.++.+ +.+.. .++..|........+.+.-..++.+|.++++...+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~l---s~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAAL---STSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHH---HCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 4566777655222 2233445555543 234433 33322 455555555554446778888999999998765443
Q ss_pred h---hH--HHhCCChHHHHHHhhcCCC------HHHHHHHHHHHHHhhccCCcchhccCcccchhhccc---------cC
Q 001429 184 S---GL--LVRHDAVPALCQRLKAIEY------LDVAEQCLQALEKISRDQPHACLEGGAIMAALTYID---------FF 243 (1079)
Q Consensus 184 ~---~~--VV~~GaIp~Lv~kLl~~~~------~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd---------~~ 243 (1079)
. .. ..+...+|.|.+....... ..+.+.+...++.|.+.-+..- +...+..+..++- ..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~-q~~~~~~~~~lf~~~~~~~~~~~~ 156 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEK-QQEILDELYSLFLSPKSFSPFQPS 156 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHccccccCCCCcc
Confidence 3 22 2223378888854333321 3455555555555555433110 0001111222111 11
Q ss_pred --Ch-HHHHHHHHHHHHhhcCCCCC-chhhhhccHHHHHHhh-ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCc
Q 001429 244 --ST-SIQRVALSTVANICKKLPSE-CPSHLMEAVPILSNLL-QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGL 318 (1079)
Q Consensus 244 --~~-~vqr~A~~~lsNlc~~~~~~-~~~~v~~vlP~L~~LL-~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gl 318 (1079)
.. ..++..+...+.+..+.++. .+....+++..+..+. ...++.+...++.+++-++..+. +.+.++.++
T Consensus 157 ~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~-~~~~l~~~l---- 231 (415)
T PF12460_consen 157 SSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP-DDDDLDEFL---- 231 (415)
T ss_pred ccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC-ChhhHHHHH----
Confidence 11 25667777777766665443 3334455777777774 45678889999999999997653 233344433
Q ss_pred hHHHHHhhcCCCCCCCCccHHHHHHHHHHHH-hcCCC--CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhh
Q 001429 319 INQTTHLLNLNSRTTLSQPIYYGLIGLLVKI-SSGSI--LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLN 395 (1079)
Q Consensus 319 l~~Lv~LL~~~~~~~~~~~i~~~alr~L~nl-as~s~--~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~ 395 (1079)
..+..-+............+.-.+|+..-+ .++++ ..+++.|..+|.+. +.++..+.
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~--~~g~~aA~----------------- 291 (415)
T PF12460_consen 232 -DSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP--ELGQQAAK----------------- 291 (415)
T ss_pred -HHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh--hhHHHHHH-----------------
Confidence 233333321222222344444555555444 55565 56677777777662 11221110
Q ss_pred cccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCC
Q 001429 396 ELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSAN 475 (1079)
Q Consensus 396 ~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~ 475 (1079)
.+..+..+.+ ....|+....-.+=+-++|...++|.|++-|.++. ..+|...+.|+..++.+...+.+..=+..
T Consensus 292 -~f~il~~d~~--~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~-- 365 (415)
T PF12460_consen 292 -AFGILLSDSD--DVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPT-- 365 (415)
T ss_pred -HHhhHhcCcH--HhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHH--
Confidence 0111111000 00000000001122237888899999999998654 44999999999999999987666543322
Q ss_pred chHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001429 476 IPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFV 515 (1079)
Q Consensus 476 i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~ 515 (1079)
+-+.|-.-|+..|..+...+|+++..+++..|+.+..++.
T Consensus 366 LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 366 LLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2245666678888888899999999999888887776544
No 51
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=97.61 E-value=1.4e-05 Score=75.21 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=26.2
Q ss_pred cccCCcccccccCCCccccccccCCCCCCC
Q 001429 3 NRGQKRMEMAVDLPDDKRACSSLDFRPSTS 32 (1079)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (1079)
++||||.|..|||||+||+|.++|+|++..
T Consensus 22 e~RrrRee~~veLRK~KReE~l~KRRn~~~ 51 (97)
T PF01749_consen 22 EMRRRREEEQVELRKQKREEQLQKRRNINM 51 (97)
T ss_dssp HHHHHCCCCHHHHCHHHHHCCHSCCHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 589999999999999999999999999984
No 52
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.52 E-value=7.6e-05 Score=58.59 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=33.7
Q ss_pred chhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 001429 140 SLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 140 ~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~ 178 (1079)
..+.++..|+||.|+++|.++ ++++|.+|+|||.||+.
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 345678899999999999987 69999999999999973
No 53
>PF05536 Neurochondrin: Neurochondrin
Probab=97.52 E-value=0.0062 Score=74.64 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=166.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh---HHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSG---LLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH 225 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~---~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~ 225 (1079)
.+...+.+|+..+ .+-++.+.-.++.++.+.+.... .|.++=+ +.++.|||.... .|
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~-----------------~~- 65 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGS-----------------VP- 65 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCC-----------------CC-
Confidence 4566788888884 66677888888999887664332 2443322 567778887652 11
Q ss_pred chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCH-HHHHHHHHHHHHHHhccC
Q 001429 226 ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDR-QLVESVAICLIKIAEQLS 304 (1079)
Q Consensus 226 ~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~-~V~~~A~~als~I~~~~~ 304 (1079)
.|+ .....+.-|+.+++-+|+-.....-..+.+-+|.|..++.+.+. .++.+|+-||..|+ +
T Consensus 66 ----~~~----------~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s-- 128 (543)
T PF05536_consen 66 ----SDC----------PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-S-- 128 (543)
T ss_pred ----CCC----------CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-c--
Confidence 111 34566777999999999943222234566789999999988777 99999999999999 4
Q ss_pred CCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-----------CChHHHHHHhhccCCCCcc
Q 001429 305 QSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI-----------LNIGSVLKDILSTYDLSHG 373 (1079)
Q Consensus 305 ~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~-----------~gi~~~L~~lL~~~~~e~~ 373 (1079)
+++-.+.+++.|.++.|++.+.+. +.....++.+|.++++... ..++..|...+...
T Consensus 129 -~~~G~~aLl~~g~v~~L~ei~~~~------~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~----- 196 (543)
T PF05536_consen 129 -SPEGAKALLESGAVPALCEIIPNQ------SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF----- 196 (543)
T ss_pred -CcHhHHHHHhcCCHHHHHHHHHhC------cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-----
Confidence 688899999999999999999863 3345678888888877655 12222222222221
Q ss_pred chhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHH
Q 001429 374 MSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLS 453 (1079)
Q Consensus 374 w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ 453 (1079)
....-.+++.++..+||..+.. + ...-.-..+...+..-+.+++.+.....-|..++.
T Consensus 197 ---------~~~~kfell~~L~~~L~~~~~~-------~------~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~ 254 (543)
T PF05536_consen 197 ---------HGEDKFELLEFLSAFLPRSPIL-------P------LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALN 254 (543)
T ss_pred ---------ccchHHHHHHHHHHhcCcCCcc-------c------cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1122345566677888777320 0 00001234556677777788888899999999999
Q ss_pred HHHHhhccCCHH
Q 001429 454 VINKLVYLSKSD 465 (1079)
Q Consensus 454 ai~~iv~~~~~~ 465 (1079)
....|+...-++
T Consensus 255 Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 255 LAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHhChH
Confidence 999998864443
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.51 E-value=0.00024 Score=81.14 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=130.5
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccC
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE---TNPDIMLLAVRAITYLCDIF 180 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~---~~~elq~~A~~aLtNIa~~~ 180 (1079)
..+..++..+..+ |..++..|+..|..++.......-. ...++++.++++|.+. ++.++|..|++||.+++. .
T Consensus 105 ~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~--~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~ 180 (312)
T PF03224_consen 105 DPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEK--LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-S 180 (312)
T ss_dssp --HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HH--HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-S
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccc--hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-c
Confidence 3678888866666 9999999999999998866543322 1256788888888763 245678999999999994 5
Q ss_pred CcchhHHHhCCChHHHHHHhh-------cCCCHHHHHHHHHHHHHhhccCC--cchhccCcccchhhccccC-ChHHHHH
Q 001429 181 PRSSGLLVRHDAVPALCQRLK-------AIEYLDVAEQCLQALEKISRDQP--HACLEGGAIMAALTYIDFF-STSIQRV 250 (1079)
Q Consensus 181 p~~~~~VV~~GaIp~Lv~kLl-------~~~~~dl~Eqal~aL~nIs~d~~--~~Il~~G~L~~LL~lLd~~-~~~vqr~ 250 (1079)
++++..+++.|.++.|.. ++ ......++-+++-|+--++-+.. ..+.+.+.++.++..+... ...+.|.
T Consensus 181 ~~~R~~f~~~~~v~~l~~-iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv 259 (312)
T PF03224_consen 181 KEYRQVFWKSNGVSPLFD-ILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRV 259 (312)
T ss_dssp HHHHHHHHTHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHH
T ss_pred chhHHHHHhcCcHHHHHH-HHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHH
Confidence 888999999999999996 66 23357788888888877776542 3466778888888888764 7899999
Q ss_pred HHHHHHHhhcCCCCCchh-hh-hccHHHHHHhhc--cCCHHHHHHHHH
Q 001429 251 ALSTVANICKKLPSECPS-HL-MEAVPILSNLLQ--YEDRQLVESVAI 294 (1079)
Q Consensus 251 A~~~lsNlc~~~~~~~~~-~v-~~vlP~L~~LL~--~~D~~V~~~A~~ 294 (1079)
++.++.|++...+..... ++ .+++|.|..|.. ..|+++.++.-+
T Consensus 260 ~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 260 SLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp HHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999876544322 23 456666666643 468888887543
No 55
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0017 Score=76.15 Aligned_cols=397 Identities=13% Similarity=0.126 Sum_probs=217.3
Q ss_pred hHHHHHHHh-ccCCChHHHHHHHHHHHHHHhc-cCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 105 KLRSILACL-SEDTDPSRHITSLTELCEVLSF-AMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 105 ~l~~lv~~L-~s~~d~~~ql~Al~~L~~lLs~-~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+-.++.+- +.+.+...++.||.+|-+-|-. .++-..++ -..=+..+.++.-+.+ +.++|-.|.-||..|+.-.-.
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~-erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEE-ERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchh-hhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 4445678889999888774321 11111111 0112344556666666 699999999999999987666
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC----------Ccchhc---------cCcccchhhccccC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ----------PHACLE---------GGAIMAALTYIDFF 243 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~----------~~~Il~---------~G~L~~LL~lLd~~ 243 (1079)
..+... ..++-+|.-+-+.+++.+++-|++.--+-||.+. |..-.+ +.++|-+|.+|...
T Consensus 255 fm~~ym-E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 255 FMQSYM-ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 666444 3566777767888999999999988777777652 111111 23577788887542
Q ss_pred C-------hHHHHHH---HHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHH
Q 001429 244 S-------TSIQRVA---LSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEV 313 (1079)
Q Consensus 244 ~-------~~vqr~A---~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~l 313 (1079)
+ =++...| +...+.+|.+ .++++++...-+-+.+++-.-++.|.-|+..+-+| .+..++..+
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g--p~~~~lT~~ 405 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGD------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG--PCEDCLTKI 405 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhh------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC--ccHHHHHhh
Confidence 1 1222333 3333444432 34566676667778899999999999999999988 356667767
Q ss_pred HhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC------CChHHHHHHhhcc----CCC--Cccchhhhhcc
Q 001429 314 CSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI------LNIGSVLKDILST----YDL--SHGMSSPHMVD 381 (1079)
Q Consensus 314 v~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~------~gi~~~L~~lL~~----~~~--e~~w~lsni~a 381 (1079)
+ ..++|.+.+++..+ .--+.....|++|.|+..-+ ..+......+|.+ ... ..||+..|++.
T Consensus 406 V-~qalp~i~n~m~D~-----~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 406 V-PQALPGIENEMSDS-----CLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred H-HhhhHHHHHhcccc-----eeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 6 35788888887744 33445578899999987644 2333333333333 322 56899888742
Q ss_pred CChHHHHHHHHHhhcccccccCc--cch----hhccccchh-------cccChHHHHHHHHhHHHHHHHHHhccCcHHHH
Q 001429 382 GHCNQVHEVLKLLNELLPTSVGD--QCV----QLVLDKQSF-------LVDRPDLLQNFGMDILPMLIQVVNSGANIFVC 448 (1079)
Q Consensus 382 g~~~qi~~vi~li~~LlP~l~~~--~~~----~~~~~r~~~-------l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR 448 (1079)
.-.+-..++-.++...-|.+.+. +.| .+.+.|... +.-+|+ .+.|++..+|.=+. .. =
T Consensus 480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-------~V~~~~a~~~~~~~-~k-l 550 (858)
T COG5215 480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD-------AVSDILAGFYDYTS-KK-L 550 (858)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-------hHHHHHHHHHHHHH-HH-H
Confidence 21111111111112222222111 000 001112111 111222 23444444443111 11 1
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 449 YGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 449 ~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
-+|.....+++..-+...++++.. ++...|+.++...-..+=-+.=|+.+++++-+... .+.|..+.|+.+|..|++
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqS--N~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~-~~t~~~~dV~~aIsal~~ 627 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQS--NYIGVLEAIIRTRRRDIEDVEDQLMELFIRILEST-KPTTAFGDVYTAISALST 627 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc-CCchhhhHHHHHHHHHHH
Confidence 245566666655444434444442 34455666665432222122233333333322222 457788899999999987
Q ss_pred CC
Q 001429 529 PE 530 (1079)
Q Consensus 529 ~~ 530 (1079)
..
T Consensus 628 sl 629 (858)
T COG5215 628 SL 629 (858)
T ss_pred HH
Confidence 43
No 56
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.47 E-value=0.021 Score=67.48 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=141.5
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhC-----CChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 147 DSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRH-----DAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~-----GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
..++..|+++|+...+.++..-...-+.-|....|..+..+++. ...-+++ +++..++.-+.+.|...|..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 46788999999887778877777777777777788777777764 3566777 48888888899999999999986
Q ss_pred cCCcchhccCcccchhhcc----cc-CChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccC--CHHHHHHHHH
Q 001429 222 DQPHACLEGGAIMAALTYI----DF-FSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYE--DRQLVESVAI 294 (1079)
Q Consensus 222 d~~~~Il~~G~L~~LL~lL----d~-~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~--D~~V~~~A~~ 294 (1079)
.++...- ...++.++.+| .. .+...+..|+.+++++.+..+-...-.-.+.++.|.++|... +..++-++|.
T Consensus 131 ~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKME-GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccc-hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 5543211 11222233332 22 246778889999999998865543222356899999999753 4567777777
Q ss_pred HHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCC
Q 001429 295 CLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGS 353 (1079)
Q Consensus 295 als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s 353 (1079)
|+--++- +++..+.+...++|+.+++++.... ..++..-++.+|.|+...+
T Consensus 210 ~lWlLSF----~~~~~~~~~~~~~i~~l~~i~k~s~----KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 210 CIWLLTF----NPHAAEVLKRLSLIQDLSDILKEST----KEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHHhc----cHHHHHhhccccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhhcc
Confidence 7766663 4556666677899999999998652 5678888999999998854
No 57
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.008 Score=70.76 Aligned_cols=339 Identities=11% Similarity=0.104 Sum_probs=185.5
Q ss_pred ccCcHHHHHHhhcCC-C-----CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001429 146 ADSLSPVLVKLARHE-T-----NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKI 219 (1079)
Q Consensus 146 ~~g~Vp~LV~lL~~~-~-----~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nI 219 (1079)
...++|.|..||... + +=.+-..|.-||--.+...- +.+++. |=.+++.=+.+++-.-+|.|+-|+|.+
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~p--Vl~FvEqni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMRP--VLGFVEQNIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHHH--HHHHHHHhccCchhhhHHHHHHHhhhh
Confidence 456899999999763 1 12366678888877776433 233332 445565455566667789999999999
Q ss_pred hccCCcchh---ccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCC---chhhhhccHHHHHHhhccCCHHHHHHHH
Q 001429 220 SRDQPHACL---EGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSE---CPSHLMEAVPILSNLLQYEDRQLVESVA 293 (1079)
Q Consensus 220 s~d~~~~Il---~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~---~~~~v~~vlP~L~~LL~~~D~~V~~~A~ 293 (1079)
-.+-...++ =..++|.++........-+..++.|++..++.+.+.. ..+.+-.+-..|..+. +.+.+..+.|
T Consensus 394 m~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~--D~p~~~~ncs 471 (858)
T COG5215 394 MHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM--DCPFRSINCS 471 (858)
T ss_pred hcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh--ccchHHhhhH
Confidence 754322222 2345666666666556678889999999998775321 1122222222233322 3568999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCC-CCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCC--C
Q 001429 294 ICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSR-TTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYD--L 370 (1079)
Q Consensus 294 ~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~-~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~--~ 370 (1079)
|++.++++.+..-....+.++ ...-+.++.-|.+..+ ..-..+..+.+..+||.+..-++-.+.+++..++.... -
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 999999987531111111111 1122233322211110 01134556678888888888877444555544443221 1
Q ss_pred Cccc-hhhhhccCChHH-HHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHH
Q 001429 371 SHGM-SSPHMVDGHCNQ-VHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVC 448 (1079)
Q Consensus 371 e~~w-~lsni~ag~~~q-i~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR 448 (1079)
+.|. ..++|.+-...+ ++++..=+.++|..+... |..- +......|+-+++.++.++...-+-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~--------~~~~-------ie~v~D~lm~Lf~r~les~~~t~~~ 615 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT--------RRRD-------IEDVEDQLMELFIRILESTKPTTAF 615 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh--------cCCC-------cccHHHHHHHHHHHHHhccCCchhh
Confidence 2232 234543322222 233332222333222221 1111 1111123556667777766556677
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHH
Q 001429 449 YGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTF 510 (1079)
Q Consensus 449 ~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~ 510 (1079)
-.+..+|.++........=+++- .+.++|..-|+..|..++..+.-++--|-..+...|
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y~~---~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQYAS---KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH
Confidence 88899999887654332222332 344678888899999888777777666655544333
No 58
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.35 E-value=0.068 Score=64.56 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=126.3
Q ss_pred chhHHHHHHHhccCCChHHHHH-HHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 001429 103 HGKLRSILACLSEDTDPSRHIT-SLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP 181 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~-Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p 181 (1079)
.+.++.++..+... |+..-.+ ..+.+=+.+-...+...+.+......|.|.++|...+...+..-..+|+.+|.+-.+
T Consensus 50 ~GAv~~Ll~L~s~e-~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 50 LGAVELLLALLSLE-DGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred hcchHHHHhhcccc-CCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 56777777777655 5544433 444444555556677778888999999999999998425566677899999998765
Q ss_pred cchhHHHh--CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC-Ccc-hhccCcccchhhccccCChHHHHHHHHHHH-
Q 001429 182 RSSGLLVR--HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ-PHA-CLEGGAIMAALTYIDFFSTSIQRVALSTVA- 256 (1079)
Q Consensus 182 ~~~~~VV~--~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~-~~~-Il~~G~L~~LL~lLd~~~~~vqr~A~~~ls- 256 (1079)
..-..... ...|+.+-. |..++.....+--+.-..+.|+.. .+. ...+|++..+--++..+++..+-.|+..++
T Consensus 129 ~q~~~~s~~~~sIi~~~s~-l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr 207 (678)
T KOG1293|consen 129 YQDKKMSLHLKSIIVKFSL-LYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSR 207 (678)
T ss_pred ccccchhhhHHHHHHHHHH-HHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 43333332 335666653 443232211111112222222221 122 456777776666677778889999999999
Q ss_pred --HhhcCCCCCchh-----hhhccHH--HHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 257 --NICKKLPSECPS-----HLMEAVP--ILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 257 --Nlc~~~~~~~~~-----~v~~vlP--~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
++.++.+..... ...++.+ .+..++...|...+..+|-|+.++..+
T Consensus 208 ~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~ 262 (678)
T KOG1293|consen 208 GDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRK 262 (678)
T ss_pred cceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhc
Confidence 666666555322 2356777 677788888888888899998887654
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.27 E-value=0.00092 Score=60.93 Aligned_cols=88 Identities=28% Similarity=0.384 Sum_probs=67.9
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 001429 106 LRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSG 185 (1079)
Q Consensus 106 l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~ 185 (1079)
++.|++.|..+.++.++..|++.|+++ ....++|.|+++|+++ ++.++..|+|+|+.|-+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL------------GDPEAIPALIELLKDE-DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC------------THHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-------
Confidence 467888895555999999999988732 1225699999999887 79999999999999832
Q ss_pred HHHhCCChHHHHHHhhcCCCHHHHHHHHHHHH
Q 001429 186 LLVRHDAVPALCQRLKAIEYLDVAEQCLQALE 217 (1079)
Q Consensus 186 ~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~ 217 (1079)
..+++.|+..+.+.+...+++.|+++|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2478999964444456677999999986
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.24 E-value=0.00024 Score=59.32 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHH
Q 001429 246 SIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKI 299 (1079)
Q Consensus 246 ~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I 299 (1079)
.+++.|+|++++++.+.+.....+..+++|.|..+|.+++..|+..|||||++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467889999999888766555567889999999999999999999999999875
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.01 Score=72.69 Aligned_cols=293 Identities=15% Similarity=0.174 Sum_probs=158.8
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
-.+..|...++.+ +++.+..|...+.++-. ...+.+...|+++.|..++.++ +|.+.-.|..+|..|.+..++.
T Consensus 121 y~~~Pl~~~l~d~-~~yvRktaa~~vakl~~----~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 121 YLCDPLLKCLKDD-DPYVRKTAAVCVAKLFD----IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred HHHHHHHHhccCC-ChhHHHHHHHHHHHhhc----CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCC
Confidence 3455566667776 99999998888877532 3335677899999999999966 7999999999999999987752
Q ss_pred hhHHHhCCChHHHHHHhhcCCCHHHHHHHHH----HHHHhhccCCcc------h--------------hccCcccchhhc
Q 001429 184 SGLLVRHDAVPALCQRLKAIEYLDVAEQCLQ----ALEKISRDQPHA------C--------------LEGGAIMAALTY 239 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~----aL~nIs~d~~~~------I--------------l~~G~L~~LL~l 239 (1079)
... ..++.++.+|+.. +-|..-| .|..++...|.. | +.-+.++.++++
T Consensus 195 ~~~----~l~~~~~~~lL~a----l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 195 NLL----ELNPQLINKLLEA----LNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred Ccc----cccHHHHHHHHHH----HHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 111 2445555555532 1222222 334444433321 1 111122222222
Q ss_pred cccCChHHHHHHHH----HHHHhhcCCCCCchhhhhccHHHHHHh------------hccCCH-HHHHHHHHHHHHHHhc
Q 001429 240 IDFFSTSIQRVALS----TVANICKKLPSECPSHLMEAVPILSNL------------LQYEDR-QLVESVAICLIKIAEQ 302 (1079)
Q Consensus 240 Ld~~~~~vqr~A~~----~lsNlc~~~~~~~~~~v~~vlP~L~~L------------L~~~D~-~V~~~A~~als~I~~~ 302 (1079)
+..+.. ++....- -+--++...+..++...+.+--++... .++.|+ .|...=.-|+..++..
T Consensus 267 ~~~~~~-~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 267 VKYLKQ-VNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHH-HHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 221111 1111111 111122222222333333322222111 123333 2444445555555532
Q ss_pred cCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--CChHHHHHHhhccCCCCccchhhhhc
Q 001429 303 LSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--LNIGSVLKDILSTYDLSHGMSSPHMV 380 (1079)
Q Consensus 303 ~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--~gi~~~L~~lL~~~~~e~~w~lsni~ 380 (1079)
+.++.+ +..+.+. . +.++......++|+||+++.--+ .++++.|..++.....+.
T Consensus 346 -----~nl~qv-----l~El~eY---a--tevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yv-------- 402 (734)
T KOG1061|consen 346 -----ANLAQV-----LAELKEY---A--TEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYV-------- 402 (734)
T ss_pred -----hHHHHH-----HHHHHHh---h--hhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccce--------
Confidence 223321 2222222 2 12467788899999999987755 678888888876422211
Q ss_pred cCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 001429 381 DGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVY 460 (1079)
Q Consensus 381 ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~ 460 (1079)
+|+++-.|..+++..++. . ..+.+.+.....+-.+++.|....|.+..-..
T Consensus 403 ------vqE~~vvi~dilRkyP~~-------------------~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 403 ------VQEAIVVIRDILRKYPNK-------------------Y----ESVVAILCENLDSLQEPEAKAALIWILGEYAE 453 (734)
T ss_pred ------eeehhHHHHhhhhcCCCc-------------------h----hhhhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence 234444445555555552 1 24566666666666789999999999988777
Q ss_pred cCC
Q 001429 461 LSK 463 (1079)
Q Consensus 461 ~~~ 463 (1079)
..+
T Consensus 454 ~i~ 456 (734)
T KOG1061|consen 454 RIE 456 (734)
T ss_pred ccC
Confidence 653
No 62
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.026 Score=67.76 Aligned_cols=335 Identities=16% Similarity=0.138 Sum_probs=194.1
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhh----hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSS----MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~----~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~ 178 (1079)
...++.|.+.|.+. |...+--|..+|.++---+. +-++. =|-.-++|.|.++.+++ +|.++.+|..|+.-+.=
T Consensus 127 pelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa-~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 127 PELLPQLCELLDSP-DYNTCEGAFGALQKICEDSA-QFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFII 203 (885)
T ss_pred hhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhH-HHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheee
Confidence 45677777777776 76777666677766632111 11111 23345799999999999 69999999999987764
Q ss_pred cCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhc--cCcccchhhccccCChHHHHHHHHHHH
Q 001429 179 IFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLE--GGAIMAALTYIDFFSTSIQRVALSTVA 256 (1079)
Q Consensus 179 ~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~--~G~L~~LL~lLd~~~~~vqr~A~~~ls 256 (1079)
..++....-++ -.+..|-. |-.-++++++.|.+.+|..+-.-.+..+.- .|++..+|+.....+.++--.||-...
T Consensus 204 ~~~qal~~~iD-~Fle~lFa-lanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 204 IQTQALYVHID-KFLEILFA-LANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred cCcHHHHHHHH-HHHHHHHH-HccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 43332221111 13344442 445568999999999999998776665543 345555666555556667777887777
Q ss_pred HhhcCCCCCc--hhhhhccHHHHHHhhccCCHHHHH-H------------------------------------------
Q 001429 257 NICKKLPSEC--PSHLMEAVPILSNLLQYEDRQLVE-S------------------------------------------ 291 (1079)
Q Consensus 257 Nlc~~~~~~~--~~~v~~vlP~L~~LL~~~D~~V~~-~------------------------------------------ 291 (1079)
-+|...-... ..++..++|.|.+-+.++|..++- .
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 7777642221 235667888888776665433221 1
Q ss_pred -----HHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhc----CCCCCCCCccHHHHHHHHHHHHhcCCCC-------
Q 001429 292 -----VAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLN----LNSRTTLSQPIYYGLIGLLVKISSGSIL------- 355 (1079)
Q Consensus 292 -----A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~----~~~~~~~~~~i~~~alr~L~nlas~s~~------- 355 (1079)
.-|-|...+.. .=+.+..++...+++.++-+|. +. .=.+....+-+||.||.|+-.
T Consensus 362 DdD~~~dWNLRkCSAA---aLDVLanvf~~elL~~l~PlLk~~L~~~-----~W~vrEagvLAlGAIAEGcM~g~~p~Lp 433 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAA---ALDVLANVFGDELLPILLPLLKEHLSSE-----EWKVREAGVLALGAIAEGCMQGFVPHLP 433 (885)
T ss_pred cccccccccHhhccHH---HHHHHHHhhHHHHHHHHHHHHHHHcCcc-----hhhhhhhhHHHHHHHHHHHhhhcccchH
Confidence 01333332211 1123333445566666666664 33 234566889999999999873
Q ss_pred ChHHHHHHhhccCC----CCccchhhhh----ccCChHHHHHHHHHhhcccccccCccchhhccccch--------hc--
Q 001429 356 NIGSVLKDILSTYD----LSHGMSSPHM----VDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQS--------FL-- 417 (1079)
Q Consensus 356 gi~~~L~~lL~~~~----~e~~w~lsni----~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~--------~l-- 417 (1079)
.+++.|..+|...+ .-+||+++-. ..-+.+ +.+..++.+|+..+.+. +.|.. .+
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~--~~f~pvL~~ll~~llD~------NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD--EYFKPVLEGLLRRLLDS------NKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH--hhhHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHH
Confidence 34555666665543 2579999843 222221 22333446666555543 11111 01
Q ss_pred ccChHHHHHHHHhHHHHHHHHHhcc--CcHHHHHHHHHHHHHhh
Q 001429 418 VDRPDLLQNFGMDILPMLIQVVNSG--ANIFVCYGCLSVINKLV 459 (1079)
Q Consensus 418 ~~~p~~~~~f~~~llp~Li~v~~ss--~~~~VR~~~l~ai~~iv 459 (1079)
...++.+. |...|+..|+-+|+-. -+.-|=+.+...+..-|
T Consensus 506 ~A~~eLVp-~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 506 EAGEELVP-YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred hccchhHH-HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 12344444 6667777777776532 34555555555555555
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.09 E-value=0.0033 Score=68.26 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=117.6
Q ss_pred ccCCChHHHHHHHHHHHHHHhcc-CCCchhhhh--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhC
Q 001429 114 SEDTDPSRHITSLTELCEVLSFA-MEDSLSSMM--ADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRH 190 (1079)
Q Consensus 114 ~s~~d~~~ql~Al~~L~~lLs~~-~~~~~~~~~--~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~ 190 (1079)
..+.|=..+.+|+..|+.++... .......+. ...+++.++..+.+. +..+...||.+|..++..........+ .
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 44457789999999999988755 112222221 125667777777766 577889999999999987766655554 3
Q ss_pred CChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC--cchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCC--CCc
Q 001429 191 DAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP--HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLP--SEC 266 (1079)
Q Consensus 191 GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~--~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~--~~~ 266 (1079)
..+|.|+. .+.....-+++.|..||..|+...+ ..++ +..+...+.+.+..+...++..+..+....+ ...
T Consensus 94 ~~l~~Ll~-~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 ILLPPLLK-KLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHH-GGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHH-HHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 47899995 6666778999999999999998654 2221 2334444555567777778888888877665 222
Q ss_pred hh---hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001429 267 PS---HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVC 314 (1079)
Q Consensus 267 ~~---~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv 314 (1079)
+. .+..+++.+..+|...+++|++.|-.++..+... -++..+.++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~---~~~~a~~~~ 216 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH---FPERAESIL 216 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH---H-HHH----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH---CCHhhccch
Confidence 22 2467999999999999999999988888777655 344444444
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.06 E-value=0.0062 Score=69.92 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=141.5
Q ss_pred hhccCcHHHHHHhhcCCCCHH--HHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 144 MMADSLSPVLVKLARHETNPD--IMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~~~~e--lq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
+-.+|.+..|++++..+ |.+ +..+|++.|-.|... +..+.|++.| ...++..--+....+++.-.+-.|+++-.
T Consensus 176 iR~~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hhccchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 44567888999999998 454 477999999999864 6678888766 23222111234578999999999999988
Q ss_pred cCC---cchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCC-chhhh-hccHHHHHHhhccCCHHHHHHHHHHH
Q 001429 222 DQP---HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSE-CPSHL-MEAVPILSNLLQYEDRQLVESVAICL 296 (1079)
Q Consensus 222 d~~---~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~-~~~~v-~~vlP~L~~LL~~~D~~V~~~A~~al 296 (1079)
++. ...+..|+|.+++......+..+.|.+.-+++||.-+.-.. +-.+| +.+-.-|..|-.+.|.-..-.||.++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 764 34788999999999888889999999999999998654221 22233 34555666666777888899999999
Q ss_pred HHHHhccCCCHHHHHHHH-hCC---chHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCCC
Q 001429 297 IKIAEQLSQSSQMLDEVC-SHG---LINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLS 371 (1079)
Q Consensus 297 s~I~~~~~~~~e~i~~lv-~~g---ll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~e 371 (1079)
+-|+.. ...+..+ .+| ++++++..+.++ ...|=-..-+.|..-.-+..|.-+|.+...|
T Consensus 332 ~vlat~-----KE~E~~VrkS~TlaLVEPlva~~DP~-----------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~E 394 (832)
T KOG3678|consen 332 AVLATN-----KEVEREVRKSGTLALVEPLVASLDPG-----------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLE 394 (832)
T ss_pred hhhhhh-----hhhhHHHhhccchhhhhhhhhccCcc-----------hhhhhhhhhhccCChHHHHHhhhhhhcchhh
Confidence 999864 2344444 444 556666655543 1333233333333334455566666644434
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.05 E-value=0.00081 Score=61.27 Aligned_cols=87 Identities=28% Similarity=0.361 Sum_probs=67.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhc
Q 001429 150 SPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLE 229 (1079)
Q Consensus 150 Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~ 229 (1079)
||.|++.|..+.++.++..|+++|+++-+ + .++|.|++ ++..++..++.+|+++|+.|-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~-~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIE-LLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHH-HHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHH-HHcCCCHHHHHHHHHHHHHhCC--------
Confidence 68999999444489999999999996532 1 35899995 7888999999999999999842
Q ss_pred cCcccchhhccccC-ChHHHHHHHHHHH
Q 001429 230 GGAIMAALTYIDFF-STSIQRVALSTVA 256 (1079)
Q Consensus 230 ~G~L~~LL~lLd~~-~~~vqr~A~~~ls 256 (1079)
..+++.|.+++... ...++..|+++++
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 33677788877765 4456777888875
No 66
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.98 E-value=0.021 Score=68.50 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=95.7
Q ss_pred hhhhccCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCC----CHHH
Q 001429 142 SSMMADSLSPVLVKLA---------RHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE----YLDV 208 (1079)
Q Consensus 142 ~~~~~~g~Vp~LV~lL---------~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~----~~dl 208 (1079)
+.+.....+..|.++= ....++++..+|.+||+|++-.+|...+..++.|..+.+|.+|-... ..|+
T Consensus 16 ~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~ 95 (446)
T PF10165_consen 16 DPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDV 95 (446)
T ss_pred hhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhH
Confidence 3344444455555544 22336889999999999999999999999999999999998665541 4566
Q ss_pred HHHHHHHHHHhhccCCc---chh-ccCcccchhhcccc----C-------------ChHHHHHHHHHHHHhhcCCCCCc-
Q 001429 209 AEQCLQALEKISRDQPH---ACL-EGGAIMAALTYIDF----F-------------STSIQRVALSTVANICKKLPSEC- 266 (1079)
Q Consensus 209 ~Eqal~aL~nIs~d~~~---~Il-~~G~L~~LL~lLd~----~-------------~~~vqr~A~~~lsNlc~~~~~~~- 266 (1079)
.=-..+.|--++...+. .++ +.+++..+...|.. . ...+...++.++.|+....+...
T Consensus 96 ~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~ 175 (446)
T PF10165_consen 96 EFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP 175 (446)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc
Confidence 65566666666655432 233 44666666655431 1 12234557778888866544332
Q ss_pred ---hhhhhccHHHHHHhhc---c--CCHHHHHHHHHHHHHH
Q 001429 267 ---PSHLMEAVPILSNLLQ---Y--EDRQLVESVAICLIKI 299 (1079)
Q Consensus 267 ---~~~v~~vlP~L~~LL~---~--~D~~V~~~A~~als~I 299 (1079)
...+..++++|..+|. . .-......+..+|.++
T Consensus 176 ~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 176 EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 2234445555555521 1 1233555566666555
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.96 E-value=0.084 Score=65.78 Aligned_cols=350 Identities=15% Similarity=0.169 Sum_probs=199.0
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc-chhH
Q 001429 108 SILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR-SSGL 186 (1079)
Q Consensus 108 ~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~-~~~~ 186 (1079)
.|++.+.+. |-+.++-|+..|-.-|... .-.++.=....++..|+++|.+. |.|+|..|++||+-|++--++ +...
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQLET 85 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHHHHH
Confidence 578888887 8899999998876666432 12222222446899999999998 799999999999933321110 0000
Q ss_pred H-------------------------------------HhCCChHHHHHHh-----------------------------
Q 001429 187 L-------------------------------------VRHDAVPALCQRL----------------------------- 200 (1079)
Q Consensus 187 V-------------------------------------V~~GaIp~Lv~kL----------------------------- 200 (1079)
+ ....+++.+..+|
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 0 0001111111111
Q ss_pred -----------------hcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhcccc-CChHHHHHHHHHHHHhhcCC
Q 001429 201 -----------------KAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDF-FSTSIQRVALSTVANICKKL 262 (1079)
Q Consensus 201 -----------------l~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~-~~~~vqr~A~~~lsNlc~~~ 262 (1079)
+.++..-++..|+.+|+.++.-++.... .+.+..++.=|.. ......|+-+.+++-+||..
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 1222344566677777777765544322 1223333333333 25567788889999999875
Q ss_pred CCCchhhhhccHHHHHHhh---ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC------C---
Q 001429 263 PSECPSHLMEAVPILSNLL---QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN------S--- 330 (1079)
Q Consensus 263 ~~~~~~~v~~vlP~L~~LL---~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~------~--- 330 (1079)
...--.+...++|.+.+.. +..|.+..+..+.++.-.... .|..+-..+ ..++.-+++.+... +
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei~p~~-pei~~l~l~yisYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CPKEILPHV-PEIINLCLSYISYDPNYNYDTEED 320 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhhcccc-hHHHHHHHHHhccCCCCCCCCccc
Confidence 4443345566788888887 778999999998888877765 443333222 12333333334321 0
Q ss_pred --------------------CCCCCccHHHHHHHHHHHHhcCCC--------------------------CChHHHHHHh
Q 001429 331 --------------------RTTLSQPIYYGLIGLLVKISSGSI--------------------------LNIGSVLKDI 364 (1079)
Q Consensus 331 --------------------~~~~~~~i~~~alr~L~nlas~s~--------------------------~gi~~~L~~l 364 (1079)
+-.++=++...++++|..+.+.-. +.+..++..+
T Consensus 321 ed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~l 400 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIAL 400 (1233)
T ss_pred hhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 002333566778888776655433 4566666777
Q ss_pred hccCCCCccchhhhh---ccCCh-------HHHHHHHHHhhcccccccCccchhhcccc-------chhcccChHHHHHH
Q 001429 365 LSTYDLSHGMSSPHM---VDGHC-------NQVHEVLKLLNELLPTSVGDQCVQLVLDK-------QSFLVDRPDLLQNF 427 (1079)
Q Consensus 365 L~~~~~e~~w~lsni---~ag~~-------~qi~~vi~li~~LlP~l~~~~~~~~~~~r-------~~~l~~~p~~~~~f 427 (1079)
|.+...-..|--.|= -.|++ +|+..+++.|...+. +. ....| .+++..-|+.+..-
T Consensus 401 l~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr---~k----s~kt~~~cf~lL~eli~~lp~~l~~~ 473 (1233)
T KOG1824|consen 401 LKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR---EK----SVKTRQGCFLLLTELINVLPGALAQH 473 (1233)
T ss_pred HHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh---hc----cccchhhHHHHHHHHHHhCcchhhhc
Confidence 766544333322110 13333 344445543332221 10 00111 12334456666666
Q ss_pred HHhHHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccCCHHHHHHHHh
Q 001429 428 GMDILPMLIQVVNSG-ANIFVCYGCLSVINKLVYLSKSDMLIELLK 472 (1079)
Q Consensus 428 ~~~llp~Li~v~~ss-~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~ 472 (1079)
+-.++|-++..+... .....+..+|..+..++....++.++..+.
T Consensus 474 ~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~ 519 (1233)
T KOG1824|consen 474 IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS 519 (1233)
T ss_pred ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh
Confidence 666777777766543 345678899999999999989888776653
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.96 E-value=0.00052 Score=57.31 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001429 163 PDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKI 219 (1079)
Q Consensus 163 ~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nI 219 (1079)
+.++..|+|+|++++...++.....+ ..++|.|+. ++..++.++++.|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 46889999999999988887766644 468999994 77778889999999999986
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.038 Score=67.01 Aligned_cols=186 Identities=14% Similarity=0.180 Sum_probs=136.6
Q ss_pred hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHH
Q 001429 269 HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVK 348 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~n 348 (1079)
..++.-+-+..||+++-+.|++.|...++.+.-.+ |+.+. ..+|+|++-|..+ ++.++..|+.++..
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY---PeAlr-----~~FprL~EkLeDp-----Dp~V~SAAV~VICE 207 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY---PEALR-----PCFPRLVEKLEDP-----DPSVVSAAVSVICE 207 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh---hHhHh-----hhHHHHHHhccCC-----CchHHHHHHHHHHH
Confidence 44677788889999999999999999999998763 44332 3589999999987 78899999999999
Q ss_pred HhcCCC---CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHH
Q 001429 349 ISSGSI---LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQ 425 (1079)
Q Consensus 349 las~s~---~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~ 425 (1079)
+|+-+| ..+.|.++.+|+.++. .|.+ ..+|++.+.|-|..|.
T Consensus 208 LArKnPknyL~LAP~ffkllttSsN--NWmL-----------IKiiKLF~aLtplEPR---------------------- 252 (877)
T KOG1059|consen 208 LARKNPQNYLQLAPLFYKLLVTSSN--NWVL-----------IKLLKLFAALTPLEPR---------------------- 252 (877)
T ss_pred HHhhCCcccccccHHHHHHHhccCC--Ceeh-----------HHHHHHHhhccccCch----------------------
Confidence 999999 7888999999997653 5754 5688888888887665
Q ss_pred HHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHh--hccC-CHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHH
Q 001429 426 NFGMDILPMLIQVVNSGANIFVCYGCLSVINKL--VYLS-KSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMI 502 (1079)
Q Consensus 426 ~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~i--v~~~-~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~L 502 (1079)
+.+.|+|.|+++..+|+--.+=++|+..+... ..++ +......++- .-|-.++...|+.+=+.+|-+...+
T Consensus 253 -LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCv-----qKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 253 -LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCV-----QKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred -hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHH-----HHHhhhhhcCCccHHHHHHHHHHHH
Confidence 45678999999999999999999998877644 4443 3333333321 1133344556666655444444445
Q ss_pred HHhhhH
Q 001429 503 LQKLSD 508 (1079)
Q Consensus 503 l~k~p~ 508 (1079)
++.+|+
T Consensus 327 ~ktHp~ 332 (877)
T KOG1059|consen 327 LKTHPK 332 (877)
T ss_pred hhhCHH
Confidence 555554
No 70
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.90 E-value=0.0015 Score=50.53 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=34.4
Q ss_pred cchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 182 RSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 182 ~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
+....+++.|+||.|+. |+..++.+++++|+|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHcC
Confidence 45677889999999995 8888899999999999999973
No 71
>PF05536 Neurochondrin: Neurochondrin
Probab=96.90 E-value=0.11 Score=63.72 Aligned_cols=195 Identities=21% Similarity=0.231 Sum_probs=131.6
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCch--hhhhccCcHHHHHHhhcCCC-----C-HHHHHHHHHHHH
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSL--SSMMADSLSPVLVKLARHET-----N-PDIMLLAVRAIT 174 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~--~~~~~~g~Vp~LV~lL~~~~-----~-~elq~~A~~aLt 174 (1079)
+..+++.+..|++. +-+.++.|+--+.+++...+.... +.+-..=-.+-|-+||.... + ...+-.|.-.|+
T Consensus 4 ~~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 4 SASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred hHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45678888889888 458889999999998764332221 12222222455667777631 2 344557777888
Q ss_pred HhhccCCcch--hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC--CcchhccCcccchhhccccCChHHHHH
Q 001429 175 YLCDIFPRSS--GLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ--PHACLEGGAIMAALTYIDFFSTSIQRV 250 (1079)
Q Consensus 175 NIa~~~p~~~--~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~--~~~Il~~G~L~~LL~lLd~~~~~vqr~ 250 (1079)
.++. .|+.. ..++ +-||.|++.+...+...+.+.|+.+|..|+... +..+++.|+++.+.+.+.. ....+-.
T Consensus 83 ~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 83 AFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 8776 34332 3344 789999975445555599999999999999653 4578999999999998876 5556677
Q ss_pred HHHHHHHhhcCCCCC----chhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 251 ALSTVANICKKLPSE----CPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 251 A~~~lsNlc~~~~~~----~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
|+.++.+++...... ....+..+++.|............-++|-.++++-..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 888888888765422 2233445677777777666666666777777777654
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.026 Score=69.30 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=125.1
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
.+..+...|.+. -+..+..|+ .++++.++- +--..++-|.+|.++... |.++....=-=|.|++.+.|+..
T Consensus 14 ei~elks~l~s~-~~~kr~~a~---kkvIa~Mt~----G~DvSslF~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~a 84 (734)
T KOG1061|consen 14 EIPELKSQLNSQ-SKEKRKDAV---KKVIAYMTV----GKDVSSLFPDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDLA 84 (734)
T ss_pred hchHHHHHhhhh-hhhhHHHHH---HHHHhcCcc----CcchHhhhHHHHhhcccC-CchHHHHHHHHHHHhhccCchHH
Confidence 344455555443 335555544 344544331 123456788999999988 58887777777888898888743
Q ss_pred hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCC
Q 001429 185 GLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPS 264 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~ 264 (1079)
.+||..++ +=.+.++..++--|+++++-|--+. +. .-...+|...++....-++++|+-+++++-.-.
T Consensus 85 -----~~avnt~~-kD~~d~np~iR~lAlrtm~~l~v~~---i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-- 152 (734)
T KOG1061|consen 85 -----ILAVNTFL-KDCEDPNPLIRALALRTMGCLRVDK---IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-- 152 (734)
T ss_pred -----Hhhhhhhh-ccCCCCCHHHHHHHhhceeeEeehH---HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--
Confidence 26788887 3445567888888888887774332 11 223456778888888889999999888886432
Q ss_pred CchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 265 ECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 265 ~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
.+.....++++.|..++..+|+.|+.+|..+++.|.+.
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 23456678999999999999999999999999999987
No 73
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.78 E-value=0.0083 Score=72.36 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=160.7
Q ss_pred ChHH---HHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChH
Q 001429 118 DPSR---HITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVP 194 (1079)
Q Consensus 118 d~~~---ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp 194 (1079)
+|.+ .+.|+.++.+..-|..-. =|..+++|.|.-+|++.+ ..+|..+.--++-|+...|+.+.+--=..+.=
T Consensus 854 ypEvLgsILgAikaI~nvigm~km~----pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREWMRIcf 928 (1172)
T KOG0213|consen 854 YPEVLGSILGAIKAIVNVIGMTKMT----PPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREWMRICF 928 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhccccccC----CChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 5544 345555555554333211 134678999999999985 89999999999999999998654321111223
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcc-CCcc-------------------------hh-cc----CcccchhhccccC
Q 001429 195 ALCQRLKAIEYLDVAEQCLQALEKISRD-QPHA-------------------------CL-EG----GAIMAALTYIDFF 243 (1079)
Q Consensus 195 ~Lv~kLl~~~~~dl~Eqal~aL~nIs~d-~~~~-------------------------Il-~~----G~L~~LL~lLd~~ 243 (1079)
-|++ ||..-..+++..|..++|.||+- +|.. |+ +. .+||+|+.-....
T Consensus 929 eLle-lLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP 1007 (1172)
T KOG0213|consen 929 ELLE-LLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP 1007 (1172)
T ss_pred HHHH-HHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc
Confidence 4564 66667899999999999999974 2321 22 21 2355555555556
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHH
Q 001429 244 STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTT 323 (1079)
Q Consensus 244 ~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv 323 (1079)
...+|.-.+.+++-+..........+|--+.|.|-.-|...|.-=+.-|+.+|.+|+-|. .-.|....++
T Consensus 1008 e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~----------~g~g~eda~i 1077 (1172)
T KOG0213|consen 1008 EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV----------PGTGCEDALI 1077 (1172)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC----------CCcCcHHHHH
Confidence 778999999999988876655556778889999999999999988999999999998762 2346667777
Q ss_pred HhhcCCCCCC--CCccHHHHHHHHHHHHhcCCCCChHHHHHHhhc---cCCC---Cccchhhhhc
Q 001429 324 HLLNLNSRTT--LSQPIYYGLIGLLVKISSGSILNIGSVLKDILS---TYDL---SHGMSSPHMV 380 (1079)
Q Consensus 324 ~LL~~~~~~~--~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~---~~~~---e~~w~lsni~ 380 (1079)
+||+--.++. -++.++.....++-.+... .|-...+..+++ |... ..-|++-|++
T Consensus 1078 HLLN~iWpNIle~sPhviqa~~e~~eg~r~~--Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1078 HLLNLIWPNILETSPHVIQAFDEAMEGLRVA--LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHhhhhhcCCChHHHHHHHHHHHHHHHH--hchHHHHHHHHHhccCcHHHHHHHHHHHHHhH
Confidence 7765332222 1444444444444444322 334444444444 3322 4679888764
No 74
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.17 Score=61.02 Aligned_cols=328 Identities=15% Similarity=0.053 Sum_probs=192.3
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
...+..+++.+... .++.|...+..|+.+..+.... ....+.+.+.++|... ...-+.-|+|.+..+..+...
T Consensus 95 ~~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~~i 167 (569)
T KOG1242|consen 95 ISIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGLGI 167 (569)
T ss_pred hHHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCcHH
Confidence 45666677777666 7788988888888776554332 2345688899999966 577888999999999987653
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccC---ChHHHHH---HHHHHH
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF---STSIQRV---ALSTVA 256 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~---~~~vqr~---A~~~ls 256 (1079)
......+.+-.|-.....-.+..-+|-++-+.+..++.-+ .-.+-+.++.+-..|+.+ ...++.. |+.++-
T Consensus 168 --~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 168 --ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred --hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 4455667777776433332333334434444444443321 122222233333333332 3333333 444444
Q ss_pred HhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCc
Q 001429 257 NICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQ 336 (1079)
Q Consensus 257 Nlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~ 336 (1079)
++. + ...++.++|.+..-|....=+-...++-.+..+++. .|.+++. +-..++|.+.+.|... .+
T Consensus 245 ~~~---~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~---ap~qLs~-~lp~iiP~lsevl~DT-----~~ 309 (569)
T KOG1242|consen 245 RCL---S---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC---APKQLSL-CLPDLIPVLSEVLWDT-----KP 309 (569)
T ss_pred Hhc---C---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh---chHHHHH-HHhHhhHHHHHHHccC-----CH
Confidence 443 2 234667777776655544334555666667766665 6777764 4468999999999876 57
Q ss_pred cHHHHHHHHHHHHhcCCC----CChHHHHHHhhccCCCCc--c-chhhhh--c-cCChHHHHHHHHHhhcccccccCc--
Q 001429 337 PIYYGLIGLLVKISSGSI----LNIGSVLKDILSTYDLSH--G-MSSPHM--V-DGHCNQVHEVLKLLNELLPTSVGD-- 404 (1079)
Q Consensus 337 ~i~~~alr~L~nlas~s~----~gi~~~L~~lL~~~~~e~--~-w~lsni--~-ag~~~qi~~vi~li~~LlP~l~~~-- 404 (1079)
.+...+..+|-.+++..+ .-+++.|...+.+...+. | -.++.- + .... +-. +-++|.+..+
T Consensus 310 evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psL------almvpiL~R~l~ 382 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSL------ALMVPILKRGLA 382 (569)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhH------HHHHHHHHHHHh
Confidence 788888888888888766 444555555555544211 1 111100 0 0000 000 1122222221
Q ss_pred cchhhccccch--------hcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH
Q 001429 405 QCVQLVLDKQS--------FLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS 464 (1079)
Q Consensus 405 ~~~~~~~~r~~--------~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~ 464 (1079)
+... ...|.. .+..+|..+..|+-.|+|-|=.++. +..++||.-+..|++.++...-.
T Consensus 383 eRst-~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~-d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 383 ERST-SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD-DAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hccc-hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc-CCChhHHHHHHHHHHHHHHHHHh
Confidence 0000 011111 1346788899999999999998876 45899999999999888865443
No 75
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.73 E-value=0.27 Score=61.44 Aligned_cols=209 Identities=14% Similarity=0.061 Sum_probs=131.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHH----HhhcCCCHHHHHHHHHHHHHhhccCCc
Q 001429 150 SPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQ----RLKAIEYLDVAEQCLQALEKISRDQPH 225 (1079)
Q Consensus 150 Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~----kLl~~~~~dl~Eqal~aL~nIs~d~~~ 225 (1079)
+..+-..|...+.|.+-.-|.|++...++..+- +.+....++. -+......-++-.|+.++...++.+.-
T Consensus 451 ~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~------~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl 524 (1005)
T KOG2274|consen 451 TIMIDNGLVYQESPFLLLRAFLTISKFSSSTVI------NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL 524 (1005)
T ss_pred HHHHHhhcccccCHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceec
Confidence 334444555555788888899999977765332 2222222222 122223334444455555444422222
Q ss_pred chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHh--hccCCHHHHHHHHHHHHHHHhcc
Q 001429 226 ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNL--LQYEDRQLVESVAICLIKIAEQL 303 (1079)
Q Consensus 226 ~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~L--L~~~D~~V~~~A~~als~I~~~~ 303 (1079)
.-+.-+.|..++++...++..+..-.+-+++-.|+-.|.-....-..+.|.+.++ -.++|+.|...+--++-.++...
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~ 604 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA 604 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 2245678888999998889999999999999999988766555556688888887 34678888888777777766531
Q ss_pred CCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHHhhccCCC
Q 001429 304 SQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDL 370 (1079)
Q Consensus 304 ~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~~ 370 (1079)
.+....++ -+||-++..|..+.+.. ....+..++.+|..+.++.+ +-+.|.+.++.-|+..
T Consensus 605 -~~~g~m~e----~~iPslisil~~~~~~~-~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD 673 (1005)
T KOG2274|consen 605 -ANYGPMQE----RLIPSLISVLQLNADKA-PAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDD 673 (1005)
T ss_pred -HhhcchHH----HHHHHHHHHHcCccccc-CchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCC
Confidence 01111222 35899999987654322 24556678999999988877 4556666666666544
No 76
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.70 E-value=0.18 Score=63.12 Aligned_cols=328 Identities=15% Similarity=0.118 Sum_probs=183.9
Q ss_pred CCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchh-hhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 001429 101 SDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLS-SMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI 179 (1079)
Q Consensus 101 ~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~-~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~ 179 (1079)
.....++-+++.|+.+ ..++.|.++++-+.- + .--+. .-+-..++|.|..++... ...+.....-++--++..
T Consensus 608 eL~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~-S-~l~i~l~~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~ 681 (1233)
T KOG1824|consen 608 ELPRTLPILLERLGNE---ITRLTAVKALTLIAM-S-PLDIDLSPVLTEILPELASFLRKN-QRALRLATLTALDKLVKN 681 (1233)
T ss_pred hhHHHHHHHHHHHhch---hHHHHHHHHHHHHHh-c-cceeehhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3366777788888654 788999999988753 2 22222 122456788999888875 355555555555555443
Q ss_pred CCc-----chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchh--ccCcccchhhccccCChHHHHHHH
Q 001429 180 FPR-----SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACL--EGGAIMAALTYIDFFSTSIQRVAL 252 (1079)
Q Consensus 180 ~p~-----~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il--~~G~L~~LL~lLd~~~~~vqr~A~ 252 (1079)
... ....|+ +-+|.|+ .-.+.-+.++|+..|..+....|..++ ..-.|+.++.++... -+|-.|.
T Consensus 682 ~~~~~~~~~~e~vL--~el~~Li----sesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al 753 (1233)
T KOG1824|consen 682 YSDSIPAELLEAVL--VELPPLI----SESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP--LLQGGAL 753 (1233)
T ss_pred HhccccHHHHHHHH--HHhhhhh----hHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc--cccchHH
Confidence 322 222222 3345444 345678899999999999998887654 345677778777743 4444555
Q ss_pred HHHHHhhcC---CCCCchhhhhccHHHHHHhhccCC-----HHHHHHHHHHHHH----HHhccCCCHHHHHHHHhCCchH
Q 001429 253 STVANICKK---LPSECPSHLMEAVPILSNLLQYED-----RQLVESVAICLIK----IAEQLSQSSQMLDEVCSHGLIN 320 (1079)
Q Consensus 253 ~~lsNlc~~---~~~~~~~~v~~vlP~L~~LL~~~D-----~~V~~~A~~als~----I~~~~~~~~e~i~~lv~~gll~ 320 (1079)
.++-++..- ...++++ .-.|..++..+- ..+-++|...++. ++..+ ++. ...+..
T Consensus 754 ~~~l~~f~alV~t~~~~l~-----y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~---~~~-----s~s~a~ 820 (1233)
T KOG1824|consen 754 SALLLFFQALVITKEPDLD-----YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCAC---PQK-----SKSLAT 820 (1233)
T ss_pred HHHHHHHHHHHhcCCCCcc-----HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhc---ccc-----chhHHH
Confidence 544443221 1122222 223334444321 1234455444444 44332 111 112334
Q ss_pred HHHH-hhcCCCCCCCCccHHHHHHHHHHHHhcCCC----CChHHHHHHhhccCCCC----ccchhhhhccCChHH-HHHH
Q 001429 321 QTTH-LLNLNSRTTLSQPIYYGLIGLLVKISSGSI----LNIGSVLKDILSTYDLS----HGMSSPHMVDGHCNQ-VHEV 390 (1079)
Q Consensus 321 ~Lv~-LL~~~~~~~~~~~i~~~alr~L~nlas~s~----~gi~~~L~~lL~~~~~e----~~w~lsni~ag~~~q-i~~v 390 (1079)
+++. +..+.. +..+..-++-+||.+-.+-+ .++-.++...+.+...+ +..++++++.|+-+- +-.+
T Consensus 821 kl~~~~~s~~s----~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfi 896 (1233)
T KOG1824|consen 821 KLIQDLQSPKS----SDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFI 896 (1233)
T ss_pred HHHHHHhCCCC----chhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHH
Confidence 4443 444332 45566678888899888866 66777788888776543 557778888776543 2222
Q ss_pred HHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH
Q 001429 391 LKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS 464 (1079)
Q Consensus 391 i~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~ 464 (1079)
++ .+-.=+..+-.-+-.-|+.+.....+.+.-.+..||-+|+.-..+. ....|.-+..++.|++..-..
T Consensus 897 l~----qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~-eegtR~vvAECLGkL~l~epe 965 (1233)
T KOG1824|consen 897 LE----QIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECA-EEGTRNVVAECLGKLVLIEPE 965 (1233)
T ss_pred HH----HHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccc-hhhhHHHHHHHhhhHHhCChH
Confidence 22 1111111000000011111223445566777888999988766543 445688889999999987433
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.65 E-value=0.097 Score=62.02 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=28.5
Q ss_pred ccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcC
Q 001429 272 EAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNL 328 (1079)
Q Consensus 272 ~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~ 328 (1079)
.+++.|..++..++ ++..+++++..+-+. ..++.|++++..
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------------~av~~L~~~l~d 280 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGDV--------------EAAPWCLEAMRE 280 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------------chHHHHHHHhcC
Confidence 46677777777544 888888888877542 456777777764
No 78
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.11 Score=63.36 Aligned_cols=207 Identities=15% Similarity=0.208 Sum_probs=126.3
Q ss_pred HhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccC----CCHHHHHHHHhCC---ch-H-HHHHhhc
Q 001429 257 NICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLS----QSSQMLDEVCSHG---LI-N-QTTHLLN 327 (1079)
Q Consensus 257 Nlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~----~~~e~i~~lv~~g---ll-~-~Lv~LL~ 327 (1079)
-+|+-+ ..+.+.+.+|.+...|.|....|+.+|..||..|=..|. .-|+.++.++..+ -+ . .++-|+.
T Consensus 122 FLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 122 FLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred hhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 345443 347788999999999999999999999999988765432 2466666655321 11 1 1222221
Q ss_pred CC-------------CCCCCCccHHHHHHHHHHHHhcCCC---CChHHHHHHhhccCCC----CccchhhhhccCChHHH
Q 001429 328 LN-------------SRTTLSQPIYYGLIGLLVKISSGSI---LNIGSVLKDILSTYDL----SHGMSSPHMVDGHCNQV 387 (1079)
Q Consensus 328 ~~-------------~~~~~~~~i~~~alr~L~nlas~s~---~gi~~~L~~lL~~~~~----e~~w~lsni~ag~~~qi 387 (1079)
.. +-...+...+..++..|...|..+| ...+.+++.+|...+. |++.++.++. ..+.-+
T Consensus 199 ~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~al 277 (948)
T KOG1058|consen 199 TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTAL 277 (948)
T ss_pred cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHH
Confidence 11 0112345666777777778777777 7788999999988754 4555554432 233444
Q ss_pred HHHHHHhhcccccccCccchhhccccchhcc-cChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHH
Q 001429 388 HEVLKLLNELLPTSVGDQCVQLVLDKQSFLV-DRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDM 466 (1079)
Q Consensus 388 ~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~-~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~ 466 (1079)
....+-+..|+-...+...--....|...++ .+...+.-++++++++| ++.|.+||+||+.....+++.-+.++
T Consensus 278 k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL-----ss~dldvr~Ktldi~ldLvssrNved 352 (948)
T KOG1058|consen 278 KAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL-----SSPDLDVRSKTLDIALDLVSSRNVED 352 (948)
T ss_pred HHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc-----CcccccHHHHHHHHHHhhhhhccHHH
Confidence 4443322222222222100000111222223 33455677788888755 67899999999999999999888877
Q ss_pred HHHHHh
Q 001429 467 LIELLK 472 (1079)
Q Consensus 467 L~~ll~ 472 (1079)
+...++
T Consensus 353 iv~~Lk 358 (948)
T KOG1058|consen 353 IVQFLK 358 (948)
T ss_pred HHHHHH
Confidence 765553
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.91 Score=55.68 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=145.9
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
-..+++..|++. -|+++..|...|-++...-. +. .....|.|++=|..+ +|.+|-.|+-+++-+|.-+|...
T Consensus 145 La~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYP----eA--lr~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 145 LADDVFTLLNSS-KPYVRKKAILLLYKVFLKYP----EA--LRPCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhh----Hh--HhhhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCccc
Confidence 345566666766 77888877777766654221 11 123567788888777 58888888888888887777633
Q ss_pred hHHHhCCChHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccC-ChHHHHHHHHHH--HHhhc
Q 001429 185 GLLVRHDAVPALCQRLKA-IEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF-STSIQRVALSTV--ANICK 260 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~-~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~-~~~vqr~A~~~l--sNlc~ 260 (1079)
- .--|.|- +|+. +.+-=+.--.+.-.++++--.| =+..-.++++..++... ..++.=.++.++ .|+..
T Consensus 217 L-----~LAP~ff-kllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 217 L-----QLAPLFY-KLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred c-----cccHHHH-HHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 1 2346666 4553 3333233333444444443332 23334566666666542 223333333333 25555
Q ss_pred CCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHH
Q 001429 261 KLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYY 340 (1079)
Q Consensus 261 ~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~ 340 (1079)
|.+ +....+.-++.-|..++..+|+.+.--+|.|++.|..- ++..+++- -.-++++|... +.++..
T Consensus 289 g~~-d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt---Hp~~Vqa~-----kdlIlrcL~Dk-----D~SIRl 354 (877)
T KOG1059|consen 289 GMS-DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT---HPKAVQAH-----KDLILRCLDDK-----DESIRL 354 (877)
T ss_pred CCC-CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh---CHHHHHHh-----HHHHHHHhccC-----CchhHH
Confidence 543 34577888999999999999999999999999999876 66555443 24567888866 677888
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHhhccC
Q 001429 341 GLIGLLVKISSGSILNIGSVLKDILSTY 368 (1079)
Q Consensus 341 ~alr~L~nlas~s~~gi~~~L~~lL~~~ 368 (1079)
.||..|--|++-.. +.+..+.||.+.
T Consensus 355 rALdLl~gmVskkN--l~eIVk~LM~~~ 380 (877)
T KOG1059|consen 355 RALDLLYGMVSKKN--LMEIVKTLMKHV 380 (877)
T ss_pred HHHHHHHHHhhhhh--HHHHHHHHHHHH
Confidence 89999888876654 555555555543
No 80
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.32 Score=56.74 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=161.0
Q ss_pred HHHHHHHhcCC--------CchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCC
Q 001429 91 LRELQRRRSSS--------DHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETN 162 (1079)
Q Consensus 91 l~~~~r~l~~~--------~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~ 162 (1079)
.-.+++.|+.= ..+.+.+++...... +|++....+.-|-+ ||.... ....++..|++|.|+.+|.++.-
T Consensus 324 v~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~-h~dL~~~tl~LlfN-lSFD~g-lr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 324 VIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFN-LSFDSG-LRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred HHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHhhh-cccccc-ccHHHhhccchHHHHHHhCCccc
Confidence 34456666621 256777777777776 77777666655544 344322 22346789999999999988741
Q ss_pred HHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC--CcchhccCcccchhhcc
Q 001429 163 PDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ--PHACLEGGAIMAALTYI 240 (1079)
Q Consensus 163 ~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~--~~~Il~~G~L~~LL~lL 240 (1079)
.. -|...|+.|.. ..+.-.......+||.|...++......+--..+.---|||-.. .+-|.+..|+..|+..-
T Consensus 401 ~~---iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 401 HG---IALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred ch---hhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHH
Confidence 11 24455555544 34444555577899999977776554333222222234777654 44566766777666542
Q ss_pred ccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCch
Q 001429 241 DFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYE-DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLI 319 (1079)
Q Consensus 241 d~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~-D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll 319 (1079)
-.+.... -+.++.|+..+..+.+ ...-+.+-.|...+... +..-.-+++-++++++-. +-+.-+.+-+..+|
T Consensus 477 ~k~~D~l---LmK~vRniSqHeg~tq-n~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~---dldw~~ilq~~~Lv 549 (791)
T KOG1222|consen 477 IKSRDLL---LMKVVRNISQHEGATQ-NMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVT---DLDWAKILQSENLV 549 (791)
T ss_pred hcccchH---HHHHHHHhhhccchHH-HHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccC---CCCHHHHHhhcccc
Confidence 1122222 2345667766643322 23345556666666554 455667777788887642 23334445567899
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-------CChHHHHHHhhccCCC
Q 001429 320 NQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI-------LNIGSVLKDILSTYDL 370 (1079)
Q Consensus 320 ~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~-------~gi~~~L~~lL~~~~~ 370 (1079)
|-+-..|.++-. ....+...+-++|.++..-. ++++++|..+|+....
T Consensus 550 Pw~k~~L~pga~---eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Qe 604 (791)
T KOG1222|consen 550 PWMKTQLQPGAD---EDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQE 604 (791)
T ss_pred HHHHHhhcCCcc---chhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcc
Confidence 999988876522 34466677778888877765 7899999999987554
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.32 E-value=0.21 Score=59.31 Aligned_cols=154 Identities=16% Similarity=0.090 Sum_probs=116.4
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
..-++-++..|...+++.+...++..+.. .+.. ..+..|+..|.+. ++.+...++.+|+-|-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~-----~~~~-------~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~~---- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA-----QEDA-------LDLRSVLAVLQAG-PEGLCAGIQAALGWLGG---- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc-----cCCh-------HHHHHHHHHhcCC-CHHHHHHHHHHHhcCCc----
Confidence 45678888888766577776665555521 1111 1388899999887 58899999999986532
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKL 262 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~ 262 (1079)
.++++.|+ .++...+..++.-++.++++.-.+ ..++++.+|...+..+.+.|+.++..+...
T Consensus 116 -------~~a~~~L~-~~L~~~~p~vR~aal~al~~r~~~---------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 116 -------RQAEPWLE-PLLAASEPPGRAIGLAALGAHRHD---------PGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred -------hHHHHHHH-HHhcCCChHHHHHHHHHHHhhccC---------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 25678888 588889999999999888884322 245677788888899999999999987642
Q ss_pred CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 263 PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 263 ~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
+.+|.|...+.+.|+.|...|.+++..+-
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 45777888899999999999999998773
No 82
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.32 E-value=0.0051 Score=47.53 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=31.8
Q ss_pred hhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 001429 142 SSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 142 ~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~ 178 (1079)
..+...|.+|.|+++|+++ +++++..|+|+|.||+.
T Consensus 6 ~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 6 QAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 4467889999999999976 69999999999999973
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.4 Score=57.20 Aligned_cols=298 Identities=14% Similarity=0.135 Sum_probs=157.6
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCC-ChHHHHHHhhcCCCHHHH---HHHHHHHHHhhc
Q 001429 146 ADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHD-AVPALCQRLKAIEYLDVA---EQCLQALEKISR 221 (1079)
Q Consensus 146 ~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~G-aIp~Lv~kLl~~~~~dl~---Eqal~aL~nIs~ 221 (1079)
..+.||+.+.++++. +..++.-||-.|+||+.+..... ++.-+ +-.+|| ||..-.+..++ |---+-+..|..
T Consensus 82 ~~~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~-klsaDsd~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLC-KLSADSDQNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHHhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHH-HHhcCCccccccHHHHHHHHHHHhcc
Confidence 467899999999988 58899999999999997543321 11112 233444 55543333322 222222233322
Q ss_pred cCCcchhccCcccchhhcccc----CChHHHHHHHHHHHHhhcCCCCCc-hhhhhccHHHHHHhhccCCHHHHHHHHHHH
Q 001429 222 DQPHACLEGGAIMAALTYIDF----FSTSIQRVALSTVANICKKLPSEC-PSHLMEAVPILSNLLQYEDRQLVESVAICL 296 (1079)
Q Consensus 222 d~~~~Il~~G~L~~LL~lLd~----~~~~vqr~A~~~lsNlc~~~~~~~-~~~v~~vlP~L~~LL~~~D~~V~~~A~~al 296 (1079)
+... -+ -|+.++.+|.. .+....+-.+.-+. .-...|.-+ +.+...+++.|.+.|..+..+|+.-+=.++
T Consensus 158 e~~~-tF---sL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 158 ESAS-TF---SLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLL 232 (675)
T ss_pred cccc-cc---CHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2211 11 23444444432 12222222222222 222233222 334567999999999999999998888888
Q ss_pred HHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHH----hhccCCCCc
Q 001429 297 IKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKD----ILSTYDLSH 372 (1079)
Q Consensus 297 s~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~----lL~~~~~e~ 372 (1079)
+..-...+.+|+-.+ -...++-++.-+.++ .+.++..|+.-|-.++.-.+-.++..+.. +|.......
T Consensus 233 ~~fL~eI~s~P~s~d---~~~~i~vlv~~l~ss-----~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 233 SEFLAEIRSSPSSMD---YDDMINVLVPHLQSS-----EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHhcCccccC---cccchhhccccccCC-----cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 776655444554321 123555666656555 56677777777777777666233333333 332211100
Q ss_pred cchhhhhccCChHHHHHHHH------------HhhcccccccCccchhhccccch-------hcccChHHHHHHHHhHHH
Q 001429 373 GMSSPHMVDGHCNQVHEVLK------------LLNELLPTSVGDQCVQLVLDKQS-------FLVDRPDLLQNFGMDILP 433 (1079)
Q Consensus 373 ~w~lsni~ag~~~qi~~vi~------------li~~LlP~l~~~~~~~~~~~r~~-------~l~~~p~~~~~f~~~llp 433 (1079)
-+.+-.++.....++..++. .|.-|...+.++ ....|.. ++...|.++..+...+|+
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~ 380 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD----REETRIAVLNWIILLYHKAPGQLLVHNDSIFL 380 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHH
Confidence 00010001111111111111 000000001110 1122322 235678899999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhccCCHH
Q 001429 434 MLIQVVNSGANIFVCYGCLSVINKLVYLSKSD 465 (1079)
Q Consensus 434 ~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~ 465 (1079)
+|...++.+ +..|=-.+|..+..++...+..
T Consensus 381 tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 381 TLLKTLSDR-SDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred HHHHhhcCc-hhHHHHHHHHHHHHHhcCcccc
Confidence 999998654 6678889999999999876553
No 84
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=3.6 Score=48.48 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=76.9
Q ss_pred hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 144 MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
+....+|.-||+.|... |.++-.....-|--+. ..-+.-...+..|.|..|+ ||..++.+|+....+.-|-|+|=|+
T Consensus 300 MrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~-klfp~~h~dL~~~tl~LlfNlSFD~ 376 (791)
T KOG1222|consen 300 MRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLL-KLFPIQHPDLRKATLMLLFNLSFDS 376 (791)
T ss_pred HHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHH-HhcCCCCHHHHHHHHHHhhhccccc
Confidence 66778999999999988 5777665555555443 3345556677889999999 7999999999999999999999886
Q ss_pred C--cchhccCcccchhhcccc
Q 001429 224 P--HACLEGGAIMAALTYIDF 242 (1079)
Q Consensus 224 ~--~~Il~~G~L~~LL~lLd~ 242 (1079)
. ...++.|-+|.+..+|+.
T Consensus 377 glr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 377 GLRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred cccHHHhhccchHHHHHHhCC
Confidence 4 457888889988888875
No 85
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.20 E-value=0.12 Score=59.63 Aligned_cols=260 Identities=16% Similarity=0.130 Sum_probs=168.2
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
.+...+..|... |..++-.+.+-++++...++.-. ......=...-|-.+|++.++++-..-|+|||--++.. ++++
T Consensus 115 ~~~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR 191 (442)
T KOG2759|consen 115 EWLSFLNLLNRQ-DTFIVEMSFRILSKLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYR 191 (442)
T ss_pred chHHHHHHHhcC-ChHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchh
Confidence 356666666665 77777667888888777665422 11111112334556667756788888899999999865 7889
Q ss_pred hHHHhCCChHHHHHHhh-cCCCHHHHHHHHHHHHHhhccCC--cchhccCcccchhhccccC-ChHHHHHHHHHHHHhhc
Q 001429 185 GLLVRHDAVPALCQRLK-AIEYLDVAEQCLQALEKISRDQP--HACLEGGAIMAALTYIDFF-STSIQRVALSTVANICK 260 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl-~~~~~dl~Eqal~aL~nIs~d~~--~~Il~~G~L~~LL~lLd~~-~~~vqr~A~~~lsNlc~ 260 (1079)
.+.|.++++..|+.-|. ......++-|.+-|+-.++=..+ ..+-..+.++.|...+... ...+-|.++.++.|+|.
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999888998885332 22357777776666655543321 2244566778888888765 77899999999999998
Q ss_pred CCCCCc------hhhh-hccHHHHHHhh--ccCCHHHHHHHHHHHHHHHhccCC------------------C-------
Q 001429 261 KLPSEC------PSHL-MEAVPILSNLL--QYEDRQLVESVAICLIKIAEQLSQ------------------S------- 306 (1079)
Q Consensus 261 ~~~~~~------~~~v-~~vlP~L~~LL--~~~D~~V~~~A~~als~I~~~~~~------------------~------- 306 (1079)
..+... ..++ .++.+.+-.|. .+.|++++.+.-..-..+....++ +
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 764221 2233 34556655554 357888888765444444332211 0
Q ss_pred --HHHHHHHHhC--CchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------CChHHHHHHhhccCCCC
Q 001429 307 --SQMLDEVCSH--GLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDLS 371 (1079)
Q Consensus 307 --~e~i~~lv~~--gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~~e 371 (1079)
.++.+.+-+. .++..|+.+|..+. ++.+..-|+.=||..++..| .|+-+.+..+|+|..++
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~----Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSN----DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE 424 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCC----CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch
Confidence 2345555543 57888888887653 34444457777888888877 67777888888887654
No 86
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.19 E-value=0.13 Score=61.52 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=128.7
Q ss_pred hccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC------
Q 001429 281 LQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI------ 354 (1079)
Q Consensus 281 L~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~------ 354 (1079)
|...+++|+-..+.|++.|.....-. .+|.=+ .|++|.|.-+|.+. -.+++...+..+|.||..++
T Consensus 655 lge~ypEvLgsil~Ai~~I~sv~~~~--~mqpPi-~~ilP~ltPILrnk-----h~Kv~~nti~lvg~I~~~~peyi~~r 726 (975)
T COG5181 655 LGEDYPEVLGSILKAICSIYSVHRFR--SMQPPI-SGILPSLTPILRNK-----HQKVVANTIALVGTICMNSPEYIGVR 726 (975)
T ss_pred cCcccHHHHHHHHHHHHHHhhhhccc--ccCCch-hhccccccHhhhhh-----hHHHhhhHHHHHHHHHhcCcccCCHH
Confidence 45678888888888888877542111 111111 58999999999876 56788899999999999988
Q ss_pred --CChHHHHHHhhccCCCC----ccchhhhh--ccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHH
Q 001429 355 --LNIGSVLKDILSTYDLS----HGMSSPHM--VDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQN 426 (1079)
Q Consensus 355 --~gi~~~L~~lL~~~~~e----~~w~lsni--~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~ 426 (1079)
+.|+--|..+|+..+++ +.-+.+-| +-||++-+..+++ +| .. ..| ..+-+...+-.
T Consensus 727 EWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Lln---nL----kv-------qeR--q~RvctsvaI~ 790 (975)
T COG5181 727 EWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLN---NL----KV-------QER--QQRVCTSVAIS 790 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHh---cc----hH-------HHH--Hhhhhhhhhhh
Confidence 45555667777776653 33344444 4577766555553 22 11 111 11122211111
Q ss_pred HH------HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHH
Q 001429 427 FG------MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAE 500 (1079)
Q Consensus 427 f~------~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e 500 (1079)
.+ -.++|+|+.=|. |.+..|+..+|.+++-|..+.-...+.++- .|...|+..|...|+.-=..+...+.
T Consensus 791 iVae~cgpfsVlP~lm~dY~-TPe~nVQnGvLkam~fmFeyig~~s~dYvy---~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 791 IVAEYCGPFSVLPTLMSDYE-TPEANVQNGVLKAMCFMFEYIGQASLDYVY---SITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhHhhcCchhhHHHHHhccc-CchhHHHHhHHHHHHHHHHHHHHHHHHHHH---HhhHHHHhhhcccchHHHHHHHHHHH
Confidence 11 258999999996 889999999999999999887666666654 23455777777666644456666666
Q ss_pred HHHHhhhH
Q 001429 501 MILQKLSD 508 (1079)
Q Consensus 501 ~Ll~k~p~ 508 (1079)
.|.-.+|.
T Consensus 867 Hl~Lnc~g 874 (975)
T COG5181 867 HLVLNCPG 874 (975)
T ss_pred HHhcCCCC
Confidence 66555554
No 87
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.42 Score=59.19 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC 227 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I 227 (1079)
.+.|...++|++. ++.+..-|+-|++-+..-.|+....++ +..- +||...+.-+.-.++.-+-.+|..++..
T Consensus 142 dlapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~-~lL~ek~hGVL~~~l~l~~e~c~~~~~~- 213 (866)
T KOG1062|consen 142 DLAPEVERLLQHR-DPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFR-KLLCEKHHGVLIAGLHLITELCKISPDA- 213 (866)
T ss_pred HhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHH-HHHhhcCCceeeeHHHHHHHHHhcCHHH-
Confidence 4566666666665 466666677676666666665544433 2333 2332222222222222222222222211
Q ss_pred hccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCC--chhhhhc-c----HHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 228 LEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSE--CPSHLME-A----VPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 228 l~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~--~~~~v~~-v----lP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
+..|. +....-+.++-|+..+.-++ +..-|.+ + +-.|..+|.+.|++.-+.-+-.|+.++
T Consensus 214 ------------l~~fr-~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqva 280 (866)
T KOG1062|consen 214 ------------LSYFR-DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVA 280 (866)
T ss_pred ------------HHHHH-HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 11111 14445666777776654222 2222322 1 223455578888888888888888887
Q ss_pred hccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 301 EQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 301 ~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
.+...+...-.+|+ .+.|..+..+... ......++.+||....+.+
T Consensus 281 tntdsskN~GnAIL-YE~V~TI~~I~~~-------~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 281 TNTDSSKNAGNAIL-YECVRTIMDIRSN-------SGLRVLAINILGKFLLNRD 326 (866)
T ss_pred hcccccccchhHHH-HHHHHHHHhccCC-------chHHHHHHHHHHHHhcCCc
Confidence 66432222222222 2334444444332 2344456666666554444
No 88
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=4.2 Score=50.64 Aligned_cols=195 Identities=13% Similarity=0.143 Sum_probs=130.4
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
..+-.+|+..|+++ .....++|+..+-.+...+. . ...+-|..|+-..+. |.++...----|.-.|+-.|+
T Consensus 34 ~~~~~dL~~lLdSn-kd~~KleAmKRIia~iA~G~--d-----vS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 34 NIRHDDLKQLLDSN-KDSLKLEAMKRIIALIAKGK--D-----VSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred CCChHHHHHHHhcc-ccHHHHHHHHHHHHHHhcCC--c-----HHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCC
Confidence 44556788888887 44777888876644433222 1 344677888888887 799988766667777887776
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKL 262 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~ 262 (1079)
-+-. -|-.+. |=|.-++.-++--|+++|..|=.. ++.-=.|-++-+.....+.-+.+.|+-+|--|-+-.
T Consensus 105 LALL-----SIntfQ-k~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 105 LALL-----SINTFQ-KALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred ceee-----eHHHHH-hhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 4321 345555 566667788888888888776221 111111223334445567788999999988886544
Q ss_pred CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcC
Q 001429 263 PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNL 328 (1079)
Q Consensus 263 ~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~ 328 (1079)
+... ...+..+-.||...++.|+-.|..|+-.+| |++++.| ++-..++|++|..
T Consensus 175 ~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evC------PerldLI--HknyrklC~ll~d 228 (968)
T KOG1060|consen 175 PEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVC------PERLDLI--HKNYRKLCRLLPD 228 (968)
T ss_pred hhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhc------hhHHHHh--hHHHHHHHhhccc
Confidence 3332 256677788899999999999999999887 5566655 3456788888753
No 89
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.14 E-value=0.31 Score=58.37 Aligned_cols=312 Identities=17% Similarity=0.202 Sum_probs=184.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC--cchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFP--RSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA 226 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p--~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~ 226 (1079)
+|..+.++|+++ .|+++..|+-..+.|+-... ..+...-..|.| |.+ -+.-.|+++.--.+.|+..|..-..-.
T Consensus 605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE-~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYE-NLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHH-hcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 556677888888 58999988877766654322 112333334432 333 344568888888888888876543211
Q ss_pred hh---ccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhc---cHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 227 CL---EGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLME---AVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 227 Il---~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~---vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
-+ -.|.||.+...|.+..-.++.+.+..+.-+|.+.|.- .-+++ +.=-|+..|.+.+.+++.+|-..+.+|+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey--i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY--IGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc--CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 11 2678999999999888889999999999999987652 22344 3445777788999999999999999988
Q ss_pred hccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCC-Cccchhhhh
Q 001429 301 EQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDL-SHGMSSPHM 379 (1079)
Q Consensus 301 ~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~-e~~w~lsni 379 (1079)
... +..+.+ ..|++=|.... ....+...-+|+.++.. +|-...|..|+..+.. ++ |.
T Consensus 759 ~ai-GPqdvL---------~~LlnnLkvqe-----Rq~RvctsvaI~iVae~--cgpfsVlP~lm~dY~TPe~-----nV 816 (975)
T COG5181 759 RAI-GPQDVL---------DILLNNLKVQE-----RQQRVCTSVAISIVAEY--CGPFSVLPTLMSDYETPEA-----NV 816 (975)
T ss_pred hhc-CHHHHH---------HHHHhcchHHH-----HHhhhhhhhhhhhhHhh--cCchhhHHHHHhcccCchh-----HH
Confidence 653 122222 23333333221 00000111122222222 5566666677766542 22 11
Q ss_pred ccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 001429 380 VDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLV 459 (1079)
Q Consensus 380 ~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv 459 (1079)
+ +-|++..+-.+..+ -+....++-.++|+|-+++. .-|+--|+-+...|.-++
T Consensus 817 ----Q---nGvLkam~fmFeyi-------------------g~~s~dYvy~itPlleDAlt-DrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 817 ----Q---NGVLKAMCFMFEYI-------------------GQASLDYVYSITPLLEDALT-DRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred ----H---HhHHHHHHHHHHHH-------------------HHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHHHHHHh
Confidence 0 11222112111111 12356677789999999987 457777888888888877
Q ss_pred ccCC----HHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHH
Q 001429 460 YLSK----SDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFF 521 (1079)
Q Consensus 460 ~~~~----~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~ 521 (1079)
-.+. .+....++. -..+.+|.. -++++....+..|.+-+-+...-.......|.||
T Consensus 870 Lnc~gtg~eda~IHLlN-----llwpNIle~-sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFH 929 (975)
T COG5181 870 LNCPGTGDEDAAIHLLN-----LLWPNILEP-SPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFH 929 (975)
T ss_pred cCCCCcccHHHHHHHHH-----HhhhhccCC-CcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccC
Confidence 7654 344444442 124555553 3566677788888777765433333445557665
No 90
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.19 Score=56.05 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=136.1
Q ss_pred HHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCC-CHHHHHHHHhCCchHHHHHhhcCC
Q 001429 251 ALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQ-SSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 251 A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~-~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
++.++-.+.+.+.. ...+.+.+|.|..-|.++|..|..-||..+..|.+.+.. ....++.++++|+++.++.++...
T Consensus 63 cVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 56666677655433 356678899999999999999999999999999987521 234566777999999999999866
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhh
Q 001429 330 SRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQL 409 (1079)
Q Consensus 330 ~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~ 409 (1079)
+..+-..++..|..|+.. +.-+..+.. .+++ +
T Consensus 141 -----ddeVAkAAiesikrialf-------------------------------paaleaiFe--Sell-----D----- 172 (524)
T KOG4413|consen 141 -----DDEVAKAAIESIKRIALF-------------------------------PAALEAIFE--SELL-----D----- 172 (524)
T ss_pred -----cHHHHHHHHHHHHHHHhc-------------------------------HHHHHHhcc--cccC-----C-----
Confidence 555666777777766432 111111221 1111 1
Q ss_pred ccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCCh
Q 001429 410 VLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDH 489 (1079)
Q Consensus 410 ~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~ 489 (1079)
+-++..++ ..-+.-+|.+++..|.++.+- +++.+.+.-+++.+.-..+.+--.+|.
T Consensus 173 -----------dlhlrnla------------akcndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDt 228 (524)
T KOG4413|consen 173 -----------DLHLRNLA------------AKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDT 228 (524)
T ss_pred -----------hHHHhHHH------------hhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcce
Confidence 11111111 122445677777777777654 566677777777666666766666777
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCCC
Q 001429 490 HVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTPE 530 (1079)
Q Consensus 490 ~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~~ 530 (1079)
-++..++++.-.|++-.. -+..+-.||+++.|-.|...-
T Consensus 229 LVianciElvteLaeteH--greflaQeglIdlicnIIsGa 267 (524)
T KOG4413|consen 229 LVIANCIELVTELAETEH--GREFLAQEGLIDLICNIISGA 267 (524)
T ss_pred eehhhHHHHHHHHHHHhh--hhhhcchhhHHHHHHHHhhCC
Confidence 777899999998987643 234455899999999987643
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.98 E-value=1.1 Score=52.75 Aligned_cols=315 Identities=17% Similarity=0.168 Sum_probs=172.1
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC-CHHHHHHHHHHHHHhhcc--CC
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET-NPDIMLLAVRAITYLCDI--FP 181 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~-~~elq~~A~~aLtNIa~~--~p 181 (1079)
.+.++...+-++ +..+.-.|.+.+|-++. ++..++.+...++=--++.-|..+. +..=+.+|.+-+..+++. .+
T Consensus 26 ~~~~i~~~lL~~-~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 26 FGERIQCMLLSD-SKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHCCC-cHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 334444444455 46777777788876654 4555565655554445566666553 233356787777777765 23
Q ss_pred cchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 182 RSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 182 ~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
.. +-.|.+.+++. +.+.....++..|+.+|.-|+-.+|..+.++||+..++..+-.....+.-..++++-.+...
T Consensus 103 ~~----~~~~vvralva-iae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 103 KE----IPRGVVRALVA-IAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred cc----CCHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 22 23366788885 78888899999999999999999999999999999999987655445666677777777654
Q ss_pred CCCCchhh----hhccHHHHHHhh---ccCCH--HHHHHHHHHHHHHHhccCCCHHHHHHHHhC--CchHHHHHhhcCCC
Q 001429 262 LPSECPSH----LMEAVPILSNLL---QYEDR--QLVESVAICLIKIAEQLSQSSQMLDEVCSH--GLINQTTHLLNLNS 330 (1079)
Q Consensus 262 ~~~~~~~~----v~~vlP~L~~LL---~~~D~--~V~~~A~~als~I~~~~~~~~e~i~~lv~~--gll~~Lv~LL~~~~ 330 (1079)
.....+.. ..-++-++...- ...+. +....+.-+|+.+-.+.. -+=.+... ..+..|+..|..+
T Consensus 178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~----GLl~l~~~~~~~lksLv~~L~~p- 252 (371)
T PF14664_consen 178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP----GLLYLSMNDFRGLKSLVDSLRLP- 252 (371)
T ss_pred cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC----ceeeeecCCchHHHHHHHHHcCC-
Confidence 32222111 111333333330 11222 345555556655544321 11111111 3455566666544
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCCCccchhhhhccC---ChHHHHHHHHHh------hcccccc
Q 001429 331 RTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDG---HCNQVHEVLKLL------NELLPTS 401 (1079)
Q Consensus 331 ~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~e~~w~lsni~ag---~~~qi~~vi~li------~~LlP~l 401 (1079)
++.+. ..+++.|..+|.-.. ..|.-+...+. +....+.--++- ...+|..
T Consensus 253 ----~~~ir---------------~~Ildll~dllrik~--p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~ 311 (371)
T PF14664_consen 253 ----NPEIR---------------KAILDLLFDLLRIKP--PSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR 311 (371)
T ss_pred ----CHHHH---------------HHHHHHHHHHHCCCC--CCcccchhhcccccccccccchhhhcccccccccccCcc
Confidence 22222 235566666665322 23433321100 000000000000 1112221
Q ss_pred cCccchhhccccchhcccChH-HHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 001429 402 VGDQCVQLVLDKQSFLVDRPD-LLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYL 461 (1079)
Q Consensus 402 ~~~~~~~~~~~r~~~l~~~p~-~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~ 461 (1079)
.. .+..++.+.-. .+..|+ .++++.|+++.....+..+++|+-..+..+++.
T Consensus 312 ~~--------~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~l 365 (371)
T PF14664_consen 312 SS--------KRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHL 365 (371)
T ss_pred cc--------ccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 11 11111222222 234556 478999999988776888899988887776653
No 92
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.74 E-value=0.015 Score=57.10 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=102.3
Q ss_pred CChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc--chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchh
Q 001429 191 DAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH--ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPS 268 (1079)
Q Consensus 191 GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~--~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~ 268 (1079)
+-+..|+.......+++-+||.+.-|.|.+-|--+ -..+..+|.-.+..|.........-++-.++|+|-......+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 34567777777888999999999999999988543 2456777777777777666677777999999999876555555
Q ss_pred hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHh
Q 001429 269 HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHL 325 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~L 325 (1079)
.-++.+|.+...|.+....++-.|+.++.+++.+ .....+.+....++..+.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~---~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFG---ERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc---ccchhHHhccHHHHHHHHHH
Confidence 5577899999999999999999999999999987 55556667665555444443
No 93
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.67 E-value=1.7 Score=50.60 Aligned_cols=331 Identities=12% Similarity=0.113 Sum_probs=188.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHh------CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVR------HDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~------~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
..+..++.||+....++...-+.--+.-|....+.....+-+ .-.-+.++ .|+.-++.-+.++..|.|..++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl-~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFL-NLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHH-HHHhcCChHHHHHHHHHHHHHHH
Confidence 578888999987755555444434444444443332222211 11245666 47777788888999999999986
Q ss_pred cCCcchhccCcccchhhccc----c-CChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc--cCCHHHHHHHHH
Q 001429 222 DQPHACLEGGAIMAALTYID----F-FSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ--YEDRQLVESVAI 294 (1079)
Q Consensus 222 d~~~~Il~~G~L~~LL~lLd----~-~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~--~~D~~V~~~A~~ 294 (1079)
-+. ..+..+.+.-+..+|. . ......-.|+.++.-+.+-.+-...-+..+.+..|+..|. +.+..++-+.|-
T Consensus 144 ~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 144 FGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred hcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 543 2223333333444432 1 2333444677788888776554432234566777777773 346778888888
Q ss_pred HHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--------------CChHHH
Q 001429 295 CLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------------LNIGSV 360 (1079)
Q Consensus 295 als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--------------~gi~~~ 360 (1079)
|+--++- ++...+.+-..++|+.|.+++.... ..++..-++.++.|++...+ +++.++
T Consensus 223 ciWlLtF----n~~~ae~~~~~~li~~L~~Ivk~~~----KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~ 294 (442)
T KOG2759|consen 223 CIWLLTF----NPHAAEKLKRFDLIQDLSDIVKEST----KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT 294 (442)
T ss_pred HHHHhhc----CHHHHHHHhhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH
Confidence 8887774 5777777877899999999998753 56677788999999988885 566666
Q ss_pred HHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchh----cccC---------hHHHHHH
Q 001429 361 LKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSF----LVDR---------PDLLQNF 427 (1079)
Q Consensus 361 L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~----l~~~---------p~~~~~f 427 (1079)
+..|... .|+...|.. .-+++.+-++ --..+ .++.+.-+.++ +.-+ .|-+.+|
T Consensus 295 l~~L~~r-----kysDEDL~~-di~~L~e~L~-------~svq~-LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rl 360 (442)
T KOG2759|consen 295 LQSLEER-----KYSDEDLVD-DIEFLTEKLK-------NSVQD-LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRL 360 (442)
T ss_pred HHHHHhc-----CCCcHHHHH-HHHHHHHHHH-------HHHHh-hccHHHHHHHHHhCCcCCCccccccchHHHhHHHH
Confidence 6555543 232211100 0011111111 00000 00111111111 1111 2334455
Q ss_pred HH---hHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHH
Q 001429 428 GM---DILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQ 504 (1079)
Q Consensus 428 ~~---~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~ 504 (1079)
.. .|+-+|+.++..+.|+.+=.=|+.=|.-.|.+-.. . +.++....--..+-.+++.+|+.+=..||+++..||-
T Consensus 361 nennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 361 NENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-G-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-H-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 53 47888888888777775544444555555544221 1 2222222222334556788999988999999988874
No 94
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=1.3 Score=55.95 Aligned_cols=366 Identities=17% Similarity=0.194 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhccCCCchhhhh----ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHH
Q 001429 122 HITSLTELCEVLSFAMEDSLSSMM----ADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALC 197 (1079)
Q Consensus 122 ql~Al~~L~~lLs~~~~~~~~~~~----~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv 197 (1079)
..-++.+|++++.. +++-...|. --|..|.+...|....++.+|..|...+ +++..+.+|...++..|.+-.|+
T Consensus 1742 v~m~LtAL~Nli~~-nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi-~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSA-NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVI-LLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHhh-CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHH-HHHhcccHHHHHHHhhhHHHHHH
Confidence 34578999998874 232222121 2266778888888776789999887766 55667889999999999888888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccC--CcchhccCcccchhhccccCChHHHHH-HHHHHHHhhcCC-CCCch-hhhhc
Q 001429 198 QRLKAIEYLDVAEQCLQALEKISRDQ--PHACLEGGAIMAALTYIDFFSTSIQRV-ALSTVANICKKL-PSECP-SHLME 272 (1079)
Q Consensus 198 ~kLl~~~~~dl~Eqal~aL~nIs~d~--~~~Il~~G~L~~LL~lLd~~~~~vqr~-A~~~lsNlc~~~-~~~~~-~~v~~ 272 (1079)
. ||- +-+..++.++.+|--++... .....++|++..++.++......-||. |...++.+...+ ..+.. .....
T Consensus 1820 ~-lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 T-LLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred H-HHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 5 664 45889999999999998654 345788999999988877654444443 666777776543 22211 11122
Q ss_pred cHHH-HHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhc
Q 001429 273 AVPI-LSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISS 351 (1079)
Q Consensus 273 vlP~-L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas 351 (1079)
++|- ++..+..+- +.| ..+-++...+||. |-+...-. .++..+-+.+.....+--.
T Consensus 1898 FLP~~f~d~~RD~P----EAa----VH~fE~T~EnPEL---iWn~~~r~------------kvS~~i~tM~~~~y~~QQk 1954 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSP----EAA----VHMFESTSENPEL---IWNEVTRQ------------KVSGIIDTMVGKLYEQQQK 1954 (2235)
T ss_pred hchHHHHHHHhcCH----HHH----HHHHhccCCCccc---ccCHhHHH------------HHHHHHHHHHHHHHHHhcc
Confidence 3332 233232221 222 2233332223321 11000000 0011111111111111111
Q ss_pred CCC------------------CChHHHH-HHhhccCCCCccchhhhhccCChHHHHHHHHHhhccccc-ccCccchh--h
Q 001429 352 GSI------------------LNIGSVL-KDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPT-SVGDQCVQ--L 409 (1079)
Q Consensus 352 ~s~------------------~gi~~~L-~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~-l~~~~~~~--~ 409 (1079)
++. +.+...+ ...+.+ ..|.+-+ |+.-+.++++-.-+++.. -++. ++. +
T Consensus 1955 ~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~----P~f~LR~----Pk~FL~~LLek~lelm~~~~peq-h~l~lL 2025 (2235)
T KOG1789|consen 1955 DPTVKWNTPEQSAGTSEADKECAVGGSINREFVVG----PGFNLRH----PKLFLTELLEKVLELMSRPTPEQ-HELDLL 2025 (2235)
T ss_pred CCcccccCchhhcchhhhccCcccchhhhHHHhhC----CCCcccC----HHHHHHHHHHHHHHHhcCCCccc-chhHHH
Confidence 111 1122222 222222 2354433 666666666432333321 1221 111 1
Q ss_pred ccccchhcccChHHHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCC
Q 001429 410 VLDKQSFLVDRPDLLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKD 488 (1079)
Q Consensus 410 ~~~r~~~l~~~p~~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d 488 (1079)
..+-..+++.+|..+.++- -+-+|.++.++. -.+..+-+.|+++|.-+... .--.+.+-....+...+.+|.. -
T Consensus 2026 t~A~V~L~r~hP~LADqip~LGylPK~~~Am~-~~n~s~P~SaiRVlH~Lsen--~~C~~AMA~l~~i~~~m~~mkK--~ 2100 (2235)
T KOG1789|consen 2026 TKAFVELVRHHPNLADQLPSLGYLPKFCTAMC-LQNTSAPRSAIRVLHELSEN--QFCCDAMAQLPCIDGIMKSMKK--Q 2100 (2235)
T ss_pred HHHHHHHHHhCcchhhhCCCccchHHHHHHHH-hcCCcCcHHHHHHHHHHhhc--cHHHHHHhccccchhhHHHHHh--c
Confidence 1223345678888877776 467899998754 33444456676666544321 1111223333344444444433 3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 489 HHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 489 ~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
...+-.|++.++-+++|..+....+-.+-|.+..+-+|..
T Consensus 2101 ~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2101 PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 4455688999999999998888889999999998888865
No 95
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.66 E-value=0.22 Score=63.26 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=111.8
Q ss_pred cCcHHHHHHhhcCCC----CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhh---cCCC----HHHHHHHHHH
Q 001429 147 DSLSPVLVKLARHET----NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLK---AIEY----LDVAEQCLQA 215 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~----~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl---~~~~----~dl~Eqal~a 215 (1079)
.|.+..|+.+|..-. ..++--.....|.+.+. .+.+++.+++.|+|+.|+..|. ..+. .+++|+-+..
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 345555666665421 22333344555555554 4889999999999999998664 4444 7999999999
Q ss_pred HHHhhccCCcc-------hhccC--------cccchhhccccC----ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHH
Q 001429 216 LEKISRDQPHA-------CLEGG--------AIMAALTYIDFF----STSIQRVALSTVANICKKLPSECPSHLMEAVPI 276 (1079)
Q Consensus 216 L~nIs~d~~~~-------Il~~G--------~L~~LL~lLd~~----~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~ 276 (1079)
++-|..+-... -.... -+..+|+.+... +..+....+.+|.+++.|.+..--..+.-+-|.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~ 274 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPY 274 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHh
Confidence 99998763211 11122 255566666542 467777889999999998654321222223332
Q ss_pred HHHhhc-----cCCHHHHHHHHHHHHHHHhccCCCH---HHHHHHHhCCchHHHHHhhcCC
Q 001429 277 LSNLLQ-----YEDRQLVESVAICLIKIAEQLSQSS---QMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 277 L~~LL~-----~~D~~V~~~A~~als~I~~~~~~~~---e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
| ++=. ..|. .-.+-|++.|+.+..++. ...+.+++.|++..+++.|...
T Consensus 275 l-~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~ 331 (802)
T PF13764_consen 275 L-DFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH 331 (802)
T ss_pred c-ChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2 3311 1122 233778888888876443 4567788999999999988643
No 96
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=1.3 Score=53.87 Aligned_cols=377 Identities=14% Similarity=0.090 Sum_probs=201.4
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHH-HHhhccCCc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAI-TYLCDIFPR 182 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aL-tNIa~~~p~ 182 (1079)
...+.+.+.+.. .+...|..|..++.-+. +...+..+...+++-.|-..+++..+..-++.+.-|. ++...-.+.
T Consensus 134 ~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v---~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 134 YVLELLLELLTS-TKIAERAGAAYGLAGLV---NGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred HHHHHHHHHhcc-ccHHHHhhhhHHHHHHH---cCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC
Confidence 445555556664 47788888888886543 4556666778889999999998774333332222221 111111233
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhh----ccccCChHHHHHHHHHHHHh
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALT----YIDFFSTSIQRVALSTVANI 258 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~----lLd~~~~~vqr~A~~~lsNl 258 (1079)
..-+++ ..+|.++. -.......+++.|..|..-|-+ ++...+++.++. -+.+..-.....++..++.+
T Consensus 210 ~EPyiv--~~lp~il~-~~~d~~~~Vr~Aa~~a~kai~~-----~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIV--PILPSILT-NFGDKINKVREAAVEAAKAIMR-----CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred CCchHH--hhHHHHHH-HhhccchhhhHHHHHHHHHHHH-----hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 333443 34555553 2333456777777777766654 333444443332 22222223344577788876
Q ss_pred hcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccH
Q 001429 259 CKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPI 338 (1079)
Q Consensus 259 c~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i 338 (1079)
....|.+--....+++|.|...|...+++|++.+.-|+-.++.-. .+++ |+. ++|.|++.+.++.. -
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I~~-----~ip~Lld~l~dp~~------~ 348 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-IQK-----IIPTLLDALADPSC------Y 348 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-HHH-----HHHHHHHHhcCccc------c
Confidence 655444333456789999999999999999999999999988643 2343 444 35788888886521 1
Q ss_pred HHHHHHHHHHHhcCCC--CChHHHHHHhhcc----CCC----CccchhhhhccCChHHHHHHHHHhhcccccccCccchh
Q 001429 339 YYGLIGLLVKISSGSI--LNIGSVLKDILST----YDL----SHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQ 408 (1079)
Q Consensus 339 ~~~alr~L~nlas~s~--~gi~~~L~~lL~~----~~~----e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~ 408 (1079)
...++..|+.-.-... .--+..+..+|.. .+. -++-.+.|++.=..++ +.+..++..|+|.+...-.++
T Consensus 349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp-~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP-KDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH-HHHhhhHHHHhhHHHHHhcCC
Confidence 1245555554322221 3334444444443 221 1233344443222111 334455566777666542222
Q ss_pred hccccchhcccC----hHH-HHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhh
Q 001429 409 LVLDKQSFLVDR----PDL-LQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGV 483 (1079)
Q Consensus 409 ~~~~r~~~l~~~----p~~-~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~i 483 (1079)
....|....+.= ... ...| ..+.|.+.+...+--..--|..++..+..++.+...+.+.+++ +..++.+
T Consensus 428 ~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~-----~~~~a~~ 501 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDIL-----PEILANA 501 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHH-----HHHHHHH
Confidence 111221111000 000 1112 4677877777654444445667777888888877766666655 3455555
Q ss_pred hccCChhHH-HHHHHHHHHHHHhhhHHHHH
Q 001429 484 FTRKDHHVL-ILALEIAEMILQKLSDTFLN 512 (1079)
Q Consensus 484 L~~~d~~~l-~~aLq~~e~Ll~k~p~~~~~ 512 (1079)
.+..+...+ -+.+-+.-.+..-+++.|.+
T Consensus 502 ~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~ 531 (569)
T KOG1242|consen 502 SSVLIDERIRDGVIWLFYLLPYIFGFQFQP 531 (569)
T ss_pred hhccchhhhccCeeehhhccchhhhHHhHH
Confidence 554444322 23444444444444444443
No 97
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.47 E-value=0.32 Score=58.05 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=124.7
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-----c
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD-----I 179 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~-----~ 179 (1079)
-++.++.......++..+..+++.++-++....... ..+.++..+..-+....+...+..+...+..|+. +
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 445555555555578888888888886654421111 1123344444333112233344444444444433 3
Q ss_pred CCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc-------hh----c----cCcccchhhccccCC
Q 001429 180 FPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA-------CL----E----GGAIMAALTYIDFFS 244 (1079)
Q Consensus 180 ~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~-------Il----~----~G~L~~LL~lLd~~~ 244 (1079)
.|... ..+..|++ ++.. .++...+..+++-|..|.+.. ++ + .-.+|.+++.....+
T Consensus 266 ~~~~~------~~~~~L~~-lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 266 HPLAT------ELLDKLLE-LLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD 336 (415)
T ss_pred CchHH------HHHHHHHH-HhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC
Confidence 33211 12455664 5543 788999999999999984321 11 1 223455555444444
Q ss_pred hHHHHHHHHHHHHhhcCCCCCch-hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHH
Q 001429 245 TSIQRVALSTVANICKKLPSECP-SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTT 323 (1079)
Q Consensus 245 ~~vqr~A~~~lsNlc~~~~~~~~-~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv 323 (1079)
...+-+.+.+++++.++.|..-. .....++|.|.+-|..+|..++..++.++..+... +++.+..=++ .+|++|+
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~---~~~~i~~hl~-sLI~~LL 412 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE---APELISEHLS-SLIPRLL 412 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHH-HHHHHHH
Confidence 45677789999999999886532 34577999999999999999999999999999986 5554444222 4666666
Q ss_pred Hh
Q 001429 324 HL 325 (1079)
Q Consensus 324 ~L 325 (1079)
++
T Consensus 413 ~l 414 (415)
T PF12460_consen 413 KL 414 (415)
T ss_pred hc
Confidence 53
No 98
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1.2 Score=55.28 Aligned_cols=325 Identities=17% Similarity=0.167 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhcccc
Q 001429 163 PDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDF 242 (1079)
Q Consensus 163 ~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~ 242 (1079)
+.++..||-||.-+-+-.|++-+.++ -++.+||.-..+-++-.|+.|.+-+|-+.-.-| ++--..+.++|-.
T Consensus 157 ~yVRk~AA~AIpKLYsLd~e~k~qL~------e~I~~LLaD~splVvgsAv~AF~evCPerldLI--HknyrklC~ll~d 228 (968)
T KOG1060|consen 157 PYVRKTAAHAIPKLYSLDPEQKDQLE------EVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI--HKNYRKLCRLLPD 228 (968)
T ss_pred HHHHHHHHHhhHHHhcCChhhHHHHH------HHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh--hHHHHHHHhhccc
Confidence 45555555555555554444443332 122244444445555555555555553321111 1122233333332
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCCc-----------------------hh-----hhhccHHHHHHhhccCCHHHHHHHH
Q 001429 243 FSTSIQRVALSTVANICKKL-PSEC-----------------------PS-----HLMEAVPILSNLLQYEDRQLVESVA 293 (1079)
Q Consensus 243 ~~~~vqr~A~~~lsNlc~~~-~~~~-----------------------~~-----~v~~vlP~L~~LL~~~D~~V~~~A~ 293 (1079)
-..=-|..++.++..-||.. +.+. .. -++-.+.....||++.+..|+..+|
T Consensus 229 vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~a 308 (968)
T KOG1060|consen 229 VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVA 308 (968)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHH
Confidence 23334566666777667653 2220 01 1233566777789999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCCC--
Q 001429 294 ICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLS-- 371 (1079)
Q Consensus 294 ~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~e-- 371 (1079)
.++.+++- ..+.. .++++|++||... ..++..+|+.|..|+.-.+.=+.|.++...-..+..
T Consensus 309 ql~y~lAP-----~~~~~-----~i~kaLvrLLrs~------~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~ 372 (968)
T KOG1060|consen 309 QLFYHLAP-----KNQVT-----KIAKALVRLLRSN------REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQ 372 (968)
T ss_pred hHHHhhCC-----HHHHH-----HHHHHHHHHHhcC------CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHH
Confidence 99999984 33333 4578999999865 345567888888887777744455555554433321
Q ss_pred -ccc---hhhhhc-cCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHH
Q 001429 372 -HGM---SSPHMV-DGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIF 446 (1079)
Q Consensus 372 -~~w---~lsni~-ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~ 446 (1079)
..| .++|++ +++ |..+++ +|.-.+-. .+.....+..+-+-.|-.....+....+--|++.+.+ -+..
T Consensus 373 vk~lKleiLs~La~esn---i~~ILr---E~q~YI~s-~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-hde~ 444 (968)
T KOG1060|consen 373 VKILKLEILSNLANESN---ISEILR---ELQTYIKS-SDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-HDEL 444 (968)
T ss_pred HHHHHHHHHHHHhhhcc---HHHHHH---HHHHHHhc-CchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-ccch
Confidence 122 233443 222 222221 01000000 0000000000000011111111223455667777654 4777
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhcc-----CChhHHHHHHHHHHHHHHhhhHHHH---HHHHHhC
Q 001429 447 VCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTR-----KDHHVLILALEIAEMILQKLSDTFL---NSFVKEG 518 (1079)
Q Consensus 447 VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~-----~d~~~l~~aLq~~e~Ll~k~p~~~~---~~f~rEG 518 (1079)
|=-+++..|.++++.-..+.++.+. .||.++.. .-..+++.+-..+++...-.||+.+ ..|..||
T Consensus 445 Vv~eaV~vIk~Llq~~p~~h~~ii~-------~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~ 517 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAEHLEILF-------QLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEG 517 (968)
T ss_pred hHHHHHHHHHHHHhhChHHHHHHHH-------HHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhcccc
Confidence 8888888999999876666544333 23333321 1112445556667777777777644 3577777
Q ss_pred HHHHHHHh
Q 001429 519 VFFAIDAL 526 (1079)
Q Consensus 519 v~~~I~~L 526 (1079)
-.-+.|-|
T Consensus 518 ~evKlQIL 525 (968)
T KOG1060|consen 518 DEVKLQIL 525 (968)
T ss_pred chhhHHHH
Confidence 66665554
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.42 E-value=0.33 Score=55.80 Aligned_cols=185 Identities=23% Similarity=0.271 Sum_probs=131.5
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
..+..++..+.+. ++.++..|.+.++++ ....++|.|.++|.+. ++.++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~--~-- 104 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGEL------------GSEEAVPLLRELLSDE-DPRVRDAAADALGELGD--P-- 104 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhh------------chHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC--h--
Confidence 4677888888877 889999888886543 2345789999999998 69999999998888743 2
Q ss_pred hhHHHhCCChHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCC------------hHHHHH
Q 001429 184 SGLLVRHDAVPALCQRLKA-IEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFS------------TSIQRV 250 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~-~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~------------~~vqr~ 250 (1079)
-++|.|+. +++ ..+..++..|.++|+.+-... ++.+++..++... ..++..
T Consensus 105 -------~a~~~li~-~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -------EAVPPLVE-LLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -------hHHHHHHH-HHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 46889995 666 588999999999999985432 2455555554422 123334
Q ss_pred HHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCC
Q 001429 251 ALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNS 330 (1079)
Q Consensus 251 A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~ 330 (1079)
++..++++- ....++.|...+...+..|+..|.-++..+... + ..+.+.+...+...
T Consensus 169 a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~---~---------~~~~~~l~~~~~~~- 225 (335)
T COG1413 169 AAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE---N---------VEAADLLVKALSDE- 225 (335)
T ss_pred HHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc---h---------hhHHHHHHHHhcCC-
Confidence 444444431 134578899999999999999999999988764 2 34556777777765
Q ss_pred CCCCCccHHHHHHHHHHHH
Q 001429 331 RTTLSQPIYYGLIGLLVKI 349 (1079)
Q Consensus 331 ~~~~~~~i~~~alr~L~nl 349 (1079)
+..+...++..|+.+
T Consensus 226 ----~~~vr~~~~~~l~~~ 240 (335)
T COG1413 226 ----SLEVRKAALLALGEI 240 (335)
T ss_pred ----CHHHHHHHHHHhccc
Confidence 555556666666664
No 100
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.73 Score=58.36 Aligned_cols=323 Identities=14% Similarity=0.114 Sum_probs=163.5
Q ss_pred CcHHHHHHhhc------CCC-CHHHHHHHHHHHHHhhccCC------cchhHHHhCCChHHHHHHhhcCCCHHHHHHHHH
Q 001429 148 SLSPVLVKLAR------HET-NPDIMLLAVRAITYLCDIFP------RSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQ 214 (1079)
Q Consensus 148 g~Vp~LV~lL~------~~~-~~elq~~A~~aLtNIa~~~p------~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~ 214 (1079)
++++-++.+|. .+. ++.-..=|.+++++|++-.- .....++-..++| .+.+++--|+-+|+|
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP-----~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP-----EFQSPYGYLRARACW 484 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH-----hhcCchhHHHHHHHH
Confidence 56788889998 332 34445578899999986422 2222233223333 446788899999999
Q ss_pred HHHHhhc-cCCcchhccCcccchhhccc-cCChHHHHHHHHHHHHhhcCCCCCc---hhhhhccHHHHHHhhccCCHHHH
Q 001429 215 ALEKISR-DQPHACLEGGAIMAALTYID-FFSTSIQRVALSTVANICKKLPSEC---PSHLMEAVPILSNLLQYEDRQLV 289 (1079)
Q Consensus 215 aL~nIs~-d~~~~Il~~G~L~~LL~lLd-~~~~~vqr~A~~~lsNlc~~~~~~~---~~~v~~vlP~L~~LL~~~D~~V~ 289 (1079)
+++.++. +-+....-..++....+.|. .....++-.|+-++.-+..+.+..+ -.+|.+++.-|..+.+.-+.+.+
T Consensus 485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L 564 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL 564 (1010)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH
Confidence 9999994 44444333444555555555 4567788888888877766654332 23455555556666555555544
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHh---CCchHHHHHhhcCC-CCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhh
Q 001429 290 ESVAICLIKIAEQLSQSSQMLDEVCS---HGLINQTTHLLNLN-SRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDIL 365 (1079)
Q Consensus 290 ~~A~~als~I~~~~~~~~e~i~~lv~---~gll~~Lv~LL~~~-~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL 365 (1079)
..+ +-.|+..| ++.+..+.- ..+.....+++... +....+. -.++.++ |++.++..+|
T Consensus 565 t~v---me~iV~~f---seElsPfA~eL~q~La~~F~k~l~~~~~~~~~~d---dk~iaA~---------GiL~Ti~Til 626 (1010)
T KOG1991|consen 565 TNV---MEKIVCKF---SEELSPFAVELCQNLAETFLKVLQTSEDEDESDD---DKAIAAS---------GILRTISTIL 626 (1010)
T ss_pred HHH---HHHHHHHH---HHhhchhHHHHHHHHHHHHHHHHhccCCCCccch---HHHHHHH---------HHHHHHHHHH
Confidence 443 33344443 222222220 12333344444421 1100111 1222222 2333333333
Q ss_pred ccCCC--C-------ccchhhhhccCCh----HHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHH
Q 001429 366 STYDL--S-------HGMSSPHMVDGHC----NQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDIL 432 (1079)
Q Consensus 366 ~~~~~--e-------~~w~lsni~ag~~----~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~ll 432 (1079)
.+... + .+..+-+ +--+ +-..++++++.++-=...+ -.|+ .| +||
T Consensus 627 ~s~e~~p~vl~~le~~~l~vi~--~iL~~~i~dfyeE~~ei~~~~t~~~~~---------------Isp~-mW----~ll 684 (1010)
T KOG1991|consen 627 LSLENHPEVLKQLEPIVLPVIG--FILKNDITDFYEELLEIVSSLTFLSKE---------------ISPI-MW----GLL 684 (1010)
T ss_pred HHHhccHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhhhhhhhcc---------------cCHH-HH----HHH
Confidence 32211 0 0000000 0001 1112222222211000000 0122 22 678
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChh--HHHHHHHHHHHHHHh---hh
Q 001429 433 PMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHH--VLILALEIAEMILQK---LS 507 (1079)
Q Consensus 433 p~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~--~l~~aLq~~e~Ll~k---~p 507 (1079)
|.+.+++...+ .+-=-...-++.|.+.++.++.+..-.-...+-..+..+|.+++.. =+.+|-++++.++.. .+
T Consensus 685 ~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~ 763 (1010)
T KOG1991|consen 685 ELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLL 763 (1010)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcH
Confidence 88889887553 5555688999999999998855543322223334445556553222 135677777776644 45
Q ss_pred HHHHHHHHH
Q 001429 508 DTFLNSFVK 516 (1079)
Q Consensus 508 ~~~~~~f~r 516 (1079)
|-|.+.|.+
T Consensus 764 dq~iplf~~ 772 (1010)
T KOG1991|consen 764 DQYIPLFLE 772 (1010)
T ss_pred hhHhHHHHH
Confidence 668888877
No 101
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.14 E-value=0.42 Score=54.72 Aligned_cols=194 Identities=23% Similarity=0.243 Sum_probs=124.7
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhh---ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc-
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMM---ADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI- 179 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~---~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~- 179 (1079)
.++.+.+..+... ....+..||..+.++|...- ...++ ...++..+.+.++.+. .+-+..|+++++-++=.
T Consensus 43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhc
Confidence 3577788888766 57888899999999886432 12222 3357888899998874 56777888888877543
Q ss_pred -CCcchhHHHhCCChHHHHHHhhcCC-CHHHHHHHHHHHHHhhcc---CCcchhc-cCcccch--hhccc---------c
Q 001429 180 -FPRSSGLLVRHDAVPALCQRLKAIE-YLDVAEQCLQALEKISRD---QPHACLE-GGAIMAA--LTYID---------F 242 (1079)
Q Consensus 180 -~p~~~~~VV~~GaIp~Lv~kLl~~~-~~dl~Eqal~aL~nIs~d---~~~~Il~-~G~L~~L--L~lLd---------~ 242 (1079)
.-+....++ ....|.|...+.... .+.++..|+.||+-++-- .+..+.+ ...+..+ +.++. .
T Consensus 118 g~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 118 GAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 223444454 357788885333332 456767888888887643 2222210 0011100 00111 1
Q ss_pred -CChHHHHHHHHHHHHhhcCCCCCch-hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhcc
Q 001429 243 -FSTSIQRVALSTVANICKKLPSECP-SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQL 303 (1079)
Q Consensus 243 -~~~~vqr~A~~~lsNlc~~~~~~~~-~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~ 303 (1079)
....++..|+.+-+-+....+...+ ......+|.|..+|.+.|..|+..|--+|+-|.+..
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1235677777666767666655333 345779999999999999999999999999887653
No 102
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=94.90 E-value=0.14 Score=59.25 Aligned_cols=156 Identities=16% Similarity=0.118 Sum_probs=110.7
Q ss_pred chhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 001429 103 HGKLRSILACLSEDTD-PSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP 181 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d-~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p 181 (1079)
.+.+..|+..+.+.+- ..++++|.+-|-++++..|-+.+.. -| +..++.+-+..+-++++...+..|.|+..++.
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~---~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVAR---IG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhh---cc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 4456667777776522 2457889998988888766544433 33 44444444444458999999999999999999
Q ss_pred cchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc----hhccCcccchhhccccCChHHHH-HHHHHHH
Q 001429 182 RSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA----CLEGGAIMAALTYIDFFSTSIQR-VALSTVA 256 (1079)
Q Consensus 182 ~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~----Il~~G~L~~LL~lLd~~~~~vqr-~A~~~ls 256 (1079)
+.....|..|++...+- -..-.++++...|.-||+|++-....+ +++..+- --|-+|.|....+.| .||-+++
T Consensus 255 et~~~Lvaa~~lD~vl~-~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~-EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLY-WCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAA-EWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred HHHHHHHhhcccchhee-ecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhh-hhhhhhhcchHHHHHHHHHHHHh
Confidence 99999999999998873 455567999999999999999876543 4554432 244445555556655 4888888
Q ss_pred HhhcCCCC
Q 001429 257 NICKKLPS 264 (1079)
Q Consensus 257 Nlc~~~~~ 264 (1079)
-++.+++-
T Consensus 333 vlat~KE~ 340 (832)
T KOG3678|consen 333 VLATNKEV 340 (832)
T ss_pred hhhhhhhh
Confidence 88877643
No 103
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.41 Score=59.27 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=73.3
Q ss_pred cCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHH
Q 001429 242 FFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQ 321 (1079)
Q Consensus 242 ~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~ 321 (1079)
+..--++--|+.+++|+|. .++++++.|-..++|++.|+.|++.|..|..++... .|+..+.++ ++
T Consensus 118 s~nq~vVglAL~alg~i~s------~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK---~P~l~e~f~-----~~ 183 (866)
T KOG1062|consen 118 SSNQYVVGLALCALGNICS------PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK---VPDLVEHFV-----IA 183 (866)
T ss_pred CCCeeehHHHHHHhhccCC------HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc---CchHHHHhh-----HH
Confidence 3344566779999999984 378899999999999999999999999999999876 787776554 56
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 322 TTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 322 Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
.-.+|... ...+....+..+..+|.-++
T Consensus 184 ~~~lL~ek-----~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 184 FRKLLCEK-----HHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHhhc-----CCceeeeHHHHHHHHHhcCH
Confidence 66677654 44555567777777777766
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=3.8 Score=46.21 Aligned_cols=355 Identities=12% Similarity=0.105 Sum_probs=178.1
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCch---hhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSL---SSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI 179 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~---~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~ 179 (1079)
..-++.+-.+|..+ |..+..-++..+..++--++.... ..++..+++|.++.++..+ |.++-..|...|..|+-
T Consensus 81 pnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrial- 157 (524)
T KOG4413|consen 81 PNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIAL- 157 (524)
T ss_pred hhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHh-
Confidence 44556666677777 667777888888888765543222 3467889999999999998 68998888888888874
Q ss_pred CCcchhHHHhCCChHHHHHHhhcCCCHHHHH-HHHHHHHHhhccC---CcchhccCcccchhhcccc-CChHHHHHHHHH
Q 001429 180 FPRSSGLLVRHDAVPALCQRLKAIEYLDVAE-QCLQALEKISRDQ---PHACLEGGAIMAALTYIDF-FSTSIQRVALST 254 (1079)
Q Consensus 180 ~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~E-qal~aL~nIs~d~---~~~Il~~G~L~~LL~lLd~-~~~~vqr~A~~~ 254 (1079)
.|....++........+-.+=+...+-+++. ..+.-+-.|..-+ ...|-..|-+..|..-+.- .++-+..+++-.
T Consensus 158 fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciEl 237 (524)
T KOG4413|consen 158 FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIEL 237 (524)
T ss_pred cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence 4665666666555544432222223333332 2333333333322 3345555555544444432 123333333333
Q ss_pred HHHhhcCCCCCchhhhhccHHHHHHhhccCC--HHHHHHHHHHHHHHHhc---cCCCHHH-HHHHHhCCchHHHHHhhcC
Q 001429 255 VANICKKLPSECPSHLMEAVPILSNLLQYED--RQLVESVAICLIKIAEQ---LSQSSQM-LDEVCSHGLINQTTHLLNL 328 (1079)
Q Consensus 255 lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D--~~V~~~A~~als~I~~~---~~~~~e~-i~~lv~~gll~~Lv~LL~~ 328 (1079)
+..+..-.....|..-.+++..+++++.-.| +--.-.+.-.+.++-.. ++-.+++ .+.++ -.|....+.+..
T Consensus 238 vteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEm 315 (524)
T KOG4413|consen 238 VTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEM 315 (524)
T ss_pred HHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhc
Confidence 3333322222222222334444444433221 11111122222221100 0001111 11111 112333344444
Q ss_pred CCCCCCCccHHHHHHHHHHHHhcCCC------CChHHHHHHhhccC-CCCccchhhhhccCChHHHHHHHHHhhcccccc
Q 001429 329 NSRTTLSQPIYYGLIGLLVKISSGSI------LNIGSVLKDILSTY-DLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTS 401 (1079)
Q Consensus 329 ~~~~~~~~~i~~~alr~L~nlas~s~------~gi~~~L~~lL~~~-~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l 401 (1079)
+ ++..+..++.++|.+-+... .-..|...+++... .. | .+++.+.-...++-|++++.+-
T Consensus 316 n-----DpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq-------n-ahakqeaaihaLaaIagelrlk 382 (524)
T KOG4413|consen 316 N-----DPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ-------N-AHAKQEAAIHALAAIAGELRLK 382 (524)
T ss_pred C-----CchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc-------c-ccchHHHHHHHHHHhhccccCC
Confidence 4 56677889999999866554 11222333333211 10 1 2455555555566667766554
Q ss_pred cCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhh-ccCCHHHHHHHHhcCCchHHH
Q 001429 402 VGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLV-YLSKSDMLIELLKSANIPSFL 480 (1079)
Q Consensus 402 ~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv-~~~~~~~L~~ll~~~~i~s~L 480 (1079)
++. + . .+....|-.|+|.=.-.- ...+|. ..+
T Consensus 383 peq---------------------------------i-t-DgkaeerlrclifdaaaqstkldPl------------eLF 415 (524)
T KOG4413|consen 383 PEQ---------------------------------I-T-DGKAEERLRCLIFDAAAQSTKLDPL------------ELF 415 (524)
T ss_pred hhh---------------------------------c-c-ccHHHHHHHHHHHHHHhhccCCChH------------HHH
Confidence 442 0 0 111233444544321111 112222 223
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHH
Q 001429 481 AGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAI 523 (1079)
Q Consensus 481 a~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I 523 (1079)
-+++++.-+.+-..++....-+..+ |+.....|.+||++.-|
T Consensus 416 lgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiV 457 (524)
T KOG4413|consen 416 LGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIV 457 (524)
T ss_pred HHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeee
Confidence 4466665666666777777766665 99889999999988765
No 105
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=2.1 Score=52.92 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHhhc--cCCcchhHHHhCCCh
Q 001429 123 ITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE-------TNPDIMLLAVRAITYLCD--IFPRSSGLLVRHDAV 193 (1079)
Q Consensus 123 l~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~-------~~~elq~~A~~aLtNIa~--~~p~~~~~VV~~GaI 193 (1079)
+.|+..+-...+.-.+.++ .|.++-++.+|... +|+.-.+-|.|.+++|.+ ..+.-...+.++=.+
T Consensus 388 laal~fl~~~~sKrke~Tf-----qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKRKEETF-----QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhcccchhhh-----hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 3445444443343333343 36788899999421 233334467788888876 334444444444344
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCC
Q 001429 194 PALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKL 262 (1079)
Q Consensus 194 p~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~ 262 (1079)
+.++ --+.+++.=++.+|+..+..++.|-+...+-..+.....+++.+....++-.|+-++.-+-++.
T Consensus 463 ~hv~-P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 463 NHVI-PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHhh-HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 4444 2446788899999999999998887776666666667777777778888888888888777765
No 106
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=5.6 Score=47.97 Aligned_cols=236 Identities=13% Similarity=0.100 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHHHHhccCCCchhhhh-ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---cCCcchhHHHhCCCh
Q 001429 118 DPSRHITSLTELCEVLSFAMEDSLSSMM-ADSLSPVLVKLARHETNPDIMLLAVRAITYLCD---IFPRSSGLLVRHDAV 193 (1079)
Q Consensus 118 d~~~ql~Al~~L~~lLs~~~~~~~~~~~-~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~---~~p~~~~~VV~~GaI 193 (1079)
+|..+.--+..|.-+.+ -|.++.+- -..+.+-|.+.|+++ +++++..+--+|++... ..|+..+ ....+
T Consensus 180 n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s~d---~~~~i 252 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSSMD---YDDMI 252 (675)
T ss_pred CchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccccC---cccch
Confidence 55555444445533322 23333221 235677788888888 59998877777776643 2344321 23578
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchh--ccCcccchhhccccCChHHHHHHHHH----HHHhhcCCCCCch
Q 001429 194 PALCQRLKAIEYLDVAEQCLQALEKISRDQPHACL--EGGAIMAALTYIDFFSTSIQRVALST----VANICKKLPSECP 267 (1079)
Q Consensus 194 p~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il--~~G~L~~LL~lLd~~~~~vqr~A~~~----lsNlc~~~~~~~~ 267 (1079)
+.|+.. +.++...+++-|+.=|.-+..-.+..++ -.|++..+|.++......--+.+... +.-+|.......-
T Consensus 253 ~vlv~~-l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~ 331 (675)
T KOG0212|consen 253 NVLVPH-LQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE 331 (675)
T ss_pred hhcccc-ccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence 889874 5567788888887767666655555533 37888888888876544322222222 2223332111111
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHH-hCCchHHHHHhhcCCCCCCCCccHHHHHHHHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVC-SHGLINQTTHLLNLNSRTTLSQPIYYGLIGLL 346 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv-~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L 346 (1079)
.-...++..|...|.++..+.+..++.-|..+-..+ |. +.++ ...+.+.|+.-|+.. +..++..++..+
T Consensus 332 id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~---p~--ql~~h~~~if~tLL~tLsd~-----sd~vvl~~L~ll 401 (675)
T KOG0212|consen 332 IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA---PG--QLLVHNDSIFLTLLKTLSDR-----SDEVVLLALSLL 401 (675)
T ss_pred cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC---cc--hhhhhccHHHHHHHHhhcCc-----hhHHHHHHHHHH
Confidence 223567888999999988888888877777776552 32 2233 346778888878766 677889999999
Q ss_pred HHHhcCCC-CChHHHHHHhhccCCCC
Q 001429 347 VKISSGSI-LNIGSVLKDILSTYDLS 371 (1079)
Q Consensus 347 ~nlas~s~-~gi~~~L~~lL~~~~~e 371 (1079)
++||..+. -|..+.+..+|.-++.+
T Consensus 402 a~i~~s~~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 402 ASICSSSNSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHhcCcccccHHHHHHHHHHHHhhh
Confidence 99999987 68888888888766543
No 107
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=5.9 Score=50.65 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=95.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
-+.++-+...|+...++.+|.-|++-+..+ ..+.+++..+...+.+-.|..+|.+. |..+.-+.-.|+.+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~--Tan~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLA--TANKECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHH--hcccHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence 466777888888888999999999988654 35678888888899999999999885 7888888889998886 577
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
.......+|++--+.+.+-.+.....+-|+..-|+++..+.
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 78888889987777765555677899999999999998873
No 108
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.00 E-value=0.29 Score=48.41 Aligned_cols=120 Identities=10% Similarity=-0.066 Sum_probs=100.6
Q ss_pred hhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 142 SSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 142 ~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
.++...+.+..||.=++...|.+-+.+-.--|+|.+=+ |-......+.+++..++. -++-++.-+.|-++-+|.|+|-
T Consensus 10 hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvd-sl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 10 HGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVD-SLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred ccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHH-HhhcccHHHHHHhHHHHHhhcc
Confidence 35666788899999888888889998777778888754 667777788999999997 6677889999999999999999
Q ss_pred cCC--cchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCC
Q 001429 222 DQP--HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLP 263 (1079)
Q Consensus 222 d~~--~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~ 263 (1079)
|.. ..|.+++|++.++..+........-.|+.++--+|-+..
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER 131 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc
Confidence 864 459999999999999988777778888999999998753
No 109
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=93.93 E-value=0.22 Score=58.95 Aligned_cols=189 Identities=11% Similarity=0.050 Sum_probs=134.1
Q ss_pred HhccCCCch--hhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHH
Q 001429 133 LSFAMEDSL--SSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAE 210 (1079)
Q Consensus 133 Ls~~~~~~~--~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~E 210 (1079)
.|++..-++ .+.....++..|+++|+.| +..++.-+.-+++|.+--..--....+..|.|..|+ +++.+.+..++.
T Consensus 414 kS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~-~~v~sKDdaLqa 491 (743)
T COG5369 414 KSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV-NLVMSKDDALQA 491 (743)
T ss_pred HHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHH-HHhhcchhhhhh
Confidence 455544333 2466778899999999886 356667788889998766666667788899999999 588888889999
Q ss_pred HHHHHHHHhhccCCc----chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCC----CCchhhh---hc-cHHHHH
Q 001429 211 QCLQALEKISRDQPH----ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLP----SECPSHL---ME-AVPILS 278 (1079)
Q Consensus 211 qal~aL~nIs~d~~~----~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~----~~~~~~v---~~-vlP~L~ 278 (1079)
...|.|..+--.+.. ..+...|+..++.|.....-.+|...+.++.|+..+.. ..++..- +. .+..|.
T Consensus 492 ns~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~ 571 (743)
T COG5369 492 NSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLI 571 (743)
T ss_pred cchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHH
Confidence 999999988766543 35677888999999988788999999999999844211 1122211 12 556666
Q ss_pred HhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhC-CchHHHHHhh
Q 001429 279 NLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSH-GLINQTTHLL 326 (1079)
Q Consensus 279 ~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~-gll~~Lv~LL 326 (1079)
.-+...++.-....|..|.+++.. +.+.-+.+++. .++.-+-++|
T Consensus 572 ~k~e~~np~~i~~~~yilv~~aa~---d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 572 DKYEENNPMEILEGCYILVRNAAC---DDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHhcCchhhhhhHHHHHHHHhc---cchHHHHHHhHHHHHHHHHHHH
Confidence 667777777788889999999875 44444444433 4444444444
No 110
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.84 E-value=4.7 Score=48.90 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC--------------------------CHHHHHHH
Q 001429 116 DTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET--------------------------NPDIMLLA 169 (1079)
Q Consensus 116 ~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~--------------------------~~elq~~A 169 (1079)
++|-..|++|+..|++ +...+..| ...+.|.|..+|..-- +.......
T Consensus 81 ~~d~~~~l~aL~~LT~-----~Grdi~~~-~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 81 DDDFDLRLEALIALTD-----NGRDIDFF-EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred chhHHHHHHHHHHHHc-----CCcCchhc-ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 3456789999999975 33344444 6678888888884210 11112233
Q ss_pred HHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhcccc--CChHH
Q 001429 170 VRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDF--FSTSI 247 (1079)
Q Consensus 170 ~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~--~~~~v 247 (1079)
..-+.|+..-+......-.=.+.|..+|.-.......+..+.|+..|.-|..-+ .+=.+.++.++..|.. ...+.
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~---~iP~~sl~~~i~vLCsi~~~~~l 231 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG---DIPSESLSPCIEVLCSIVNSVSL 231 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC---cCChHHHHHHHHHHhhHhccccc
Confidence 344556655443322211112556666643334455666688888888887643 1112334455555543 23356
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc------cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCC--ch
Q 001429 248 QRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ------YEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHG--LI 319 (1079)
Q Consensus 248 qr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~------~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~g--ll 319 (1079)
...+..++.|+|+.. .-..++-.|..+|. .++..++.-|...|..+.-+. ..+.+..+--.- ++
T Consensus 232 ~~~~w~~m~nL~~S~------~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~--~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 232 CKPSWRTMRNLLKSH------LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS--GEQGYPSLPFSPSSVL 303 (464)
T ss_pred chhHHHHHHHHHcCc------cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc--ccCCcceecccHHHHH
Confidence 667888999999752 12344666777772 345667777887777777652 111222221122 66
Q ss_pred HHHHHhhcCC
Q 001429 320 NQTTHLLNLN 329 (1079)
Q Consensus 320 ~~Lv~LL~~~ 329 (1079)
+.+..-|..+
T Consensus 304 ~sl~~al~~~ 313 (464)
T PF11864_consen 304 PSLLNALKSN 313 (464)
T ss_pred HHHHHHHhCC
Confidence 7777777755
No 111
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.74 E-value=6.4 Score=49.84 Aligned_cols=187 Identities=14% Similarity=0.259 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHH
Q 001429 118 DPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALC 197 (1079)
Q Consensus 118 d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv 197 (1079)
-+.....|++.+|- ++....+..+ .-+++..|+++.... ..++-..-.-+|+-++...|+.+... ..-.+|-++
T Consensus 504 ~~~~ki~a~~~~~~---~~~~~vl~~~-~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i 577 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCG---YCKVKVLLSL-QPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTI 577 (1005)
T ss_pred CCchhHHHHHHHHh---ccCceecccc-chHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHH
Confidence 34444555554443 3333333332 225566667766655 46666666788999999889877654 344567666
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHhhccCCc-chhccCcccchhhccccCC----hHHHHHHHHHHHHhhcCCCCC-chhhh
Q 001429 198 QRLK-AIEYLDVAEQCLQALEKISRDQPH-ACLEGGAIMAALTYIDFFS----TSIQRVALSTVANICKKLPSE-CPSHL 270 (1079)
Q Consensus 198 ~kLl-~~~~~dl~Eqal~aL~nIs~d~~~-~Il~~G~L~~LL~lLd~~~----~~vqr~A~~~lsNlc~~~~~~-~~~~v 270 (1079)
.-.+ .++++-++.++--+++.++..... --.+.-.||.+++.++... ...+..|+-++.-+.|+.|++ .-..+
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 4222 345678888888888888763211 1123445788888887653 778888999999999998766 33567
Q ss_pred hccHHHHHHh-hccCCHHHHHHHHHHHHHHHhccCCCHHHHHHH
Q 001429 271 MEAVPILSNL-LQYEDRQLVESVAICLIKIAEQLSQSSQMLDEV 313 (1079)
Q Consensus 271 ~~vlP~L~~L-L~~~D~~V~~~A~~als~I~~~~~~~~e~i~~l 313 (1079)
.-++|++.++ |+++|......+--||.++... +.+++..=
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~---~~eq~~t~ 698 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALISV---TLEQLLTW 698 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHHhc---CHHHHHhh
Confidence 8899999999 5667888999999999988865 55554443
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.71 E-value=0.29 Score=46.16 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhc
Q 001429 248 QRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLN 327 (1079)
Q Consensus 248 qr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~ 327 (1079)
.+-++++++.++.+.+.....+...++|.+...+..+|.+|+-.||-+|.+|+..+ ..+.+..+ ..++..|..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f--~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYF--NEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHc
Confidence 45688999999988877666678899999999999999999999999999999763 22222211 357778888887
Q ss_pred CCCCCCCCccHHHHHHHHHHHH
Q 001429 328 LNSRTTLSQPIYYGLIGLLVKI 349 (1079)
Q Consensus 328 ~~~~~~~~~~i~~~alr~L~nl 349 (1079)
.. ++++.. +...|-++
T Consensus 79 D~-----d~~Vr~-~a~~Ld~l 94 (97)
T PF12755_consen 79 DP-----DENVRS-AAELLDRL 94 (97)
T ss_pred CC-----chhHHH-HHHHHHHH
Confidence 65 344433 44555444
No 113
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.46 E-value=1 Score=58.00 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=142.9
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhccCCC-chhh-hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC---
Q 001429 106 LRSILACLSEDTDPSRHITSLTELCEVLSFAMED-SLSS-MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIF--- 180 (1079)
Q Consensus 106 l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~-~~~~-~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~--- 180 (1079)
++.+|..++.. +..+|-.|+..|+++|..-.+- +.+. +-++=+.|.|-.++.+..+..++..-|.||.-+|..-
T Consensus 464 lPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 464 LPYFVHLLMDS-EADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred HHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 33344444444 8899999999999999765543 3333 3356788999999988534445555566666655321
Q ss_pred CcchhHHHhC------------------------CChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccch
Q 001429 181 PRSSGLLVRH------------------------DAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAA 236 (1079)
Q Consensus 181 p~~~~~VV~~------------------------GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~L 236 (1079)
-+.++..-++ ..|...+..|+.-+..-++..-+..|.-+|.-.++.=-.-=.|+.|
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshL 622 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHL 622 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHH
Confidence 0111110001 1233444444443333444433444444443211110011125566
Q ss_pred hhccccCChHHHHHHH-HHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 237 LTYIDFFSTSIQRVAL-STVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 237 L~lLd~~~~~vqr~A~-~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
+.||... .-..|.|. -.|.-+|--.... ..-..++|.|.+-|....+-|+..|+.||+-++.. ..++...=
T Consensus 623 iTfLNDk-Dw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-----~ll~K~~v 694 (1431)
T KOG1240|consen 623 ITFLNDK-DWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-----GLLRKPAV 694 (1431)
T ss_pred HHHhcCc-cHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-----cccchHHH
Confidence 7777654 33344433 3344333322111 12245789999999999999999999999999864 22222222
Q ss_pred CCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcC-CC----CChHHHHHHhhccCCCCccchhhhhccCChHHHHHH
Q 001429 316 HGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSG-SI----LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEV 390 (1079)
Q Consensus 316 ~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~-s~----~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~v 390 (1079)
..+++.+.-+|.++ +.=+...++.+|..++.. +. |-+.|.|...|. .+-.||..-
T Consensus 695 ~~i~~~v~PlL~hP-----N~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~---------------~~v~~i~s~ 754 (1431)
T KOG1240|consen 695 KDILQDVLPLLCHP-----NLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE---------------RPVIQIESK 754 (1431)
T ss_pred HHHHHhhhhheeCc-----hHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh---------------ccHhhhcch
Confidence 23455555566665 444445555555554333 11 555555555554 233344333
Q ss_pred HHHhhcccccccC
Q 001429 391 LKLLNELLPTSVG 403 (1079)
Q Consensus 391 i~li~~LlP~l~~ 403 (1079)
-.|+.-|.||+..
T Consensus 755 ~~LlsclkpPVsR 767 (1431)
T KOG1240|consen 755 EVLLSCLKPPVSR 767 (1431)
T ss_pred HHHHHHhcCCCcH
Confidence 3344667777776
No 114
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=9.2 Score=47.84 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=104.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC 227 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I 227 (1079)
.+.|-|-.+|.+. ..-++.+|++++.++..-+++.... +|-.|- -++.++..-++=.|+++|..+|.-+|..|
T Consensus 245 ~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq-~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 245 PLFPFLESCLRHK-SEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQ-LFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hHHHHHHHHHhch-hHHHHHHHHHHHhhccccCHhhcch-----HHHHHH-HHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 4566677777776 3677889999999998877654433 666666 47778889999999999999999988776
Q ss_pred hccC-cccchhhccccCChHHHHH-HHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCC
Q 001429 228 LEGG-AIMAALTYIDFFSTSIQRV-ALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQ 305 (1079)
Q Consensus 228 l~~G-~L~~LL~lLd~~~~~vqr~-A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~ 305 (1079)
--.+ -|..++.- .+|. |.-++.-+-+-......+....-++..+.=+..+-..|+.+|..+++..-..
T Consensus 318 ~~cN~elE~lItd-------~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~--- 387 (865)
T KOG1078|consen 318 TVCNLDLESLITD-------SNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR--- 387 (865)
T ss_pred cccchhHHhhhcc-------cccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH---
Confidence 4332 34444432 2222 3333333332222223333333344444445555556677777777665432
Q ss_pred CHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 306 SSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 306 ~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
. ..+.+.-|-++|...+ .-.-....+.+|..+...++
T Consensus 388 k--------~~~~m~FL~~~Lr~eG----g~e~K~aivd~Ii~iie~~p 424 (865)
T KOG1078|consen 388 K--------HTVMMNFLSNMLREEG----GFEFKRAIVDAIIDIIEENP 424 (865)
T ss_pred H--------HHHHHHHHHHHHHhcc----CchHHHHHHHHHHHHHHhCc
Confidence 1 1234455556665433 22233345555555555444
No 115
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.21 E-value=1.5 Score=45.95 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHH
Q 001429 245 TSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTH 324 (1079)
Q Consensus 245 ~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~ 324 (1079)
..+..+++-+++-+|...| ..+...+|.+...|.++++.|+..|+.+|+++... +.-.. ...++..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKV----KGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cceee----hhhhhHHHHH
Confidence 3567789999999998753 45678899999999999999999999999998754 21111 1223478888
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHhcC-CCCChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhh
Q 001429 325 LLNLNSRTTLSQPIYYGLIGLLVKISSG-SILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLN 395 (1079)
Q Consensus 325 LL~~~~~~~~~~~i~~~alr~L~nlas~-s~~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~ 395 (1079)
+|... ++.+...|..++..+... .+.-+...+..++..-.....|... ...+.+....+.+++-
T Consensus 71 ~l~D~-----~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~--~~~~~~~~~~I~~fll 135 (178)
T PF12717_consen 71 LLVDE-----NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVY--GPLSREKRKKIYKFLL 135 (178)
T ss_pred HHcCC-----CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccc--cccCHHHHHHHHHHHH
Confidence 88765 677888888899988877 4433444444444433222222211 1234555666665443
No 116
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=5.8 Score=44.70 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=143.8
Q ss_pred cchhhccccCChHHHHHHHHHHHHhhcCCCCCchh-hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHH
Q 001429 234 MAALTYIDFFSTSIQRVALSTVANICKKLPSECPS-HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDE 312 (1079)
Q Consensus 234 ~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~-~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~ 312 (1079)
..++.|+.+.+..+++.|+..+.++..+ +...+. .-...++.|.+++...++ .+.|..++.|++. +.+..+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq----~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ----KEELRKK 78 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh----hHHHHHH
Confidence 3467788888899999999999998766 333322 234578889999988877 8899999999986 3555566
Q ss_pred HHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCCCccchhh-hhc--cC-ChHHHH
Q 001429 313 VCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSP-HMV--DG-HCNQVH 388 (1079)
Q Consensus 313 lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~e~~w~ls-ni~--ag-~~~qi~ 388 (1079)
+++. ++..++..+.... ..+-..+..+|+|+++..+ .+..|...+.-.+..+.+.+. ..+ .+ -..++.
T Consensus 79 ll~~-~~k~l~~~~~~p~-----~~lad~~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ 150 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQ-----SPLADLICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFH 150 (353)
T ss_pred HHHH-HHHHHHHHhcCcc-----cchHHHHHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccccchh
Confidence 6655 7788888776541 2233456777888877655 222222222211100000000 000 00 001122
Q ss_pred HHHHHhhcccccccCccchhhccccchhcccChHHHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHH
Q 001429 389 EVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDML 467 (1079)
Q Consensus 389 ~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L 467 (1079)
.+..+.+++ +.....| .++. .|. +|. ..++| |.+ .+..||++-...+.|=++|-..-+.
T Consensus 151 ylA~vf~nl---------s~~~~gR-~l~~-~~k---~~p~~kll~-----ft~-~~s~vRr~GvagtlkN~cFd~~~h~ 210 (353)
T KOG2973|consen 151 YLAPVFANL---------SQFEAGR-KLLL-EPK---RFPDQKLLP-----FTS-EDSQVRRGGVAGTLKNCCFDAKLHE 210 (353)
T ss_pred HHHHHHHHH---------hhhhhhh-hHhc-chh---hhhHhhhhc-----ccc-cchhhhccchHHHHHhhhccchhHH
Confidence 221111111 0001111 1221 122 222 22332 554 6788999999998888888554432
Q ss_pred HHHHhcCCchHHHhhhhc-----------------------------cCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Q 001429 468 IELLKSANIPSFLAGVFT-----------------------------RKDHHVLILALEIAEMILQKLSDTFLNSFVKEG 518 (1079)
Q Consensus 468 ~~ll~~~~i~s~La~iL~-----------------------------~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEG 518 (1079)
.-+.... .+|..+|. -.|+.+....++.+-.|...-+ -+.+|++-|
T Consensus 211 ~lL~e~~---~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--GRe~lR~kg 285 (353)
T KOG2973|consen 211 VLLDESI---NLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--GREVLRSKG 285 (353)
T ss_pred HHhcchH---HHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--hHHHHHhcC
Confidence 2222111 22222221 0255555677777766665544 588999999
Q ss_pred HHHHHHHhcCCC
Q 001429 519 VFFAIDALLTPE 530 (1079)
Q Consensus 519 v~~~I~~L~~~~ 530 (1079)
|.-.++.+..-.
T Consensus 286 vYpilRElhk~e 297 (353)
T KOG2973|consen 286 VYPILRELHKWE 297 (353)
T ss_pred chHHHHHHhcCC
Confidence 999999998754
No 117
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.76 E-value=37 Score=43.30 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=119.0
Q ss_pred hcCCCCHHHHHHHH-HHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccc
Q 001429 157 ARHETNPDIMLLAV-RAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMA 235 (1079)
Q Consensus 157 L~~~~~~elq~~A~-~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~ 235 (1079)
|.+. +..-+.+|. ++|..|+.|.+ ... -.|-.+ |.....+.++..-+--=|.+.+...|+..+- ++..
T Consensus 28 l~s~-n~~~kidAmK~iIa~M~~G~d--mss-----Lf~dVi-K~~~trd~ElKrL~ylYl~~yak~~P~~~lL--avNt 96 (757)
T COG5096 28 LESS-NDYKKIDAMKKIIAQMSLGED--MSS-----LFPDVI-KNVATRDVELKRLLYLYLERYAKLKPELALL--AVNT 96 (757)
T ss_pred cccc-ChHHHHHHHHHHHHHHhcCCC--hHH-----HHHHHH-HHHHhcCHHHHHHHHHHHHHHhccCHHHHHH--HHHH
Confidence 4444 455566665 45667776654 111 124445 4555778888888888888888877753221 2334
Q ss_pred hhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 236 ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 236 LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
+.+=+.+.+..++-.|+.+++-+= .-+.+..+++++..++.++...|+..|..||..+=.- +++ .+-+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~---l~~~ 164 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKD---LYHE 164 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHh---hhhc
Confidence 445555667788888999988762 2356778999999999999999999999999998543 443 3456
Q ss_pred CCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcC
Q 001429 316 HGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSG 352 (1079)
Q Consensus 316 ~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~ 352 (1079)
.|.+..+..|+... ++.++..|+.+|..|...
T Consensus 165 ~g~~~~l~~l~~D~-----dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADS-----DPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCC-----CchHHHHHHHHHHHhchh
Confidence 78899999999876 677888899999888654
No 118
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.69 E-value=1.8 Score=55.18 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhh
Q 001429 122 HITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLK 201 (1079)
Q Consensus 122 ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl 201 (1079)
++.||.-|.+.|-++.= .+..-..=|+-|..++||+++ ..|++-.-+.+=+-|....+.+-...|+.++-..+++ .|
T Consensus 487 RlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~-vL 563 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSS-ARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ-VL 563 (1387)
T ss_pred HHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE-Ee
Confidence 45777788888765421 111122348999999999998 4888777777777888777877777777666666664 44
Q ss_pred cC-CC--HHHHHHHHHHHHHhhccCC---cchhccCcccchhhccccCChHHHHH-HHHHHHHhhcCCCCCchhhhh-cc
Q 001429 202 AI-EY--LDVAEQCLQALEKISRDQP---HACLEGGAIMAALTYIDFFSTSIQRV-ALSTVANICKKLPSECPSHLM-EA 273 (1079)
Q Consensus 202 ~~-~~--~dl~Eqal~aL~nIs~d~~---~~Il~~G~L~~LL~lLd~~~~~vqr~-A~~~lsNlc~~~~~~~~~~v~-~v 273 (1079)
.. ++ .+-+--|+-.|.-|.+..+ .++++.+-|..|+..|........|. ++-+++.+-.+.+...+.-++ .+
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 33 33 4666778899999998864 47999999999999887754555555 666777777666555544443 58
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 274 VPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 274 lP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
...|..+|..+-++|+..|.-||..+.++
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 88899999999999999999999998876
No 119
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.68 E-value=0.15 Score=37.42 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=26.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDI 179 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~ 179 (1079)
++|.|+++|+++ +++++..|++||+.|++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 479999999998 699999999999999874
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.60 E-value=28 Score=44.34 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=119.0
Q ss_pred hccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCC
Q 001429 113 LSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDA 192 (1079)
Q Consensus 113 L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~Ga 192 (1079)
|.+. +...+..|+..+=.....+ ..+ ..+.|.+++..... |.|+....=-=|-++++..|+.+-. +
T Consensus 28 l~s~-n~~~kidAmK~iIa~M~~G--~dm-----ssLf~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~~~lL-----a 93 (757)
T COG5096 28 LESS-NDYKKIDAMKKIIAQMSLG--EDM-----SSLFPDVIKNVATR-DVELKRLLYLYLERYAKLKPELALL-----A 93 (757)
T ss_pred cccc-ChHHHHHHHHHHHHHHhcC--CCh-----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 5555 5677878776542222222 222 23566777777754 7999876666677778888854332 4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhc
Q 001429 193 VPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLME 272 (1079)
Q Consensus 193 Ip~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~ 272 (1079)
|+.+. +=++.++..++--|+++|+.|=. .=+-...++++.+++.+...-+.|+|+-++.++-+-.+. .-.-.+
T Consensus 94 vNti~-kDl~d~N~~iR~~AlR~ls~l~~----~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~--l~~~~g 166 (757)
T COG5096 94 VNTIQ-KDLQDPNEEIRGFALRTLSLLRV----KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD--LYHELG 166 (757)
T ss_pred HHHHH-hhccCCCHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh--hhhccc
Confidence 56676 46778899999999999998821 112234577888899988999999999999999865422 122345
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 001429 273 AVPILSNLLQYEDRQLVESVAICLIKIAE 301 (1079)
Q Consensus 273 vlP~L~~LL~~~D~~V~~~A~~als~I~~ 301 (1079)
.+-.+..++...|+.|+.+|..++..|..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 78888889999999999999999998853
No 121
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.39 E-value=0.18 Score=49.19 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=59.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
.++..|+++|...+++.....||-=|+.++...|.....+-+.|+-..++ .|+..++.+++.+|+.|+..+-.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM-~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM-ELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH-HHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH-HHhcCCCHHHHHHHHHHHHHHHH
Confidence 47899999996655788888899999999999999777666778777777 59999999999999999988753
No 122
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.23 E-value=0.91 Score=53.25 Aligned_cols=311 Identities=13% Similarity=0.077 Sum_probs=158.6
Q ss_pred hhHHHHHHHhccC-CChHHHHHHHHHHHHHH---hccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh--
Q 001429 104 GKLRSILACLSED-TDPSRHITSLTELCEVL---SFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLC-- 177 (1079)
Q Consensus 104 ~~l~~lv~~L~s~-~d~~~ql~Al~~L~~lL---s~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa-- 177 (1079)
.-.++....+.+. ....+++++++-|.-+. +|. +. ....+..++...+... .|++++.+++||..+-
T Consensus 253 ~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~-----~~-~~~~l~RvI~~~~~~~-~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 253 CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMT-----QA-YLMELGRVICKCMGEA-DPSIQLHGAKLLEELGTG 325 (728)
T ss_pred cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHccCCCC-ChHHHHHHHHHHHHHHHH
Confidence 3334444444332 23367788877664432 221 11 1223444555555566 6999999999998774
Q ss_pred ---ccCCcchhHHHhCCChHHHH------HHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccC---Ch
Q 001429 178 ---DIFPRSSGLLVRHDAVPALC------QRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF---ST 245 (1079)
Q Consensus 178 ---~~~p~~~~~VV~~GaIp~Lv------~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~---~~ 245 (1079)
+..|+.++.-+..|..-... ..+-++....+.-..+-++.+|.... -.=+..|-=..++.|+.-. ..
T Consensus 326 lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~-f~~lpn~~~T~~~~Fl~GC~d~~~ 404 (728)
T KOG4535|consen 326 LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA-FSNLPNDRQTLCITFLLGCNDSKN 404 (728)
T ss_pred HhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh-hcCCCCcchhhhHHHHhcccchHH
Confidence 45677766655544322221 00112222334555666677775431 0112222222233333211 22
Q ss_pred HHHH-HHHHHHHHhhcCC-CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccC-C--CHHHHHHHHhCCchH
Q 001429 246 SIQR-VALSTVANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLS-Q--SSQMLDEVCSHGLIN 320 (1079)
Q Consensus 246 ~vqr-~A~~~lsNlc~~~-~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~-~--~~e~i~~lv~~gll~ 320 (1079)
..|+ .|+.+..-..-+. -..+...+.++...+...|.+.--.+++.+.|++++|++... + +++-.+.=+...++.
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence 2333 2444443333221 122445667788888888887778899999999999997642 1 122222222233455
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC----CChHHHH----HHhhccCCC--------CccchhhhhccCCh
Q 001429 321 QTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI----LNIGSVL----KDILSTYDL--------SHGMSSPHMVDGHC 384 (1079)
Q Consensus 321 ~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~----~gi~~~L----~~lL~~~~~--------e~~w~lsni~ag~~ 384 (1079)
+++++-...+ ....++-..+.|.|||+..-=+ ++...++ .+++....- ++|..++|+..
T Consensus 485 ~~~~~A~~~~--Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk--- 559 (728)
T KOG4535|consen 485 KMLRSAIEAS--ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK--- 559 (728)
T ss_pred HHHHHHHHhh--hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc---
Confidence 5555433211 1145566688999998754322 2222211 111111100 22333333211
Q ss_pred HHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 001429 385 NQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLV 459 (1079)
Q Consensus 385 ~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv 459 (1079)
..-+|-- -..++-.+||.|+.+..+..||.||-.+..++.-.-
T Consensus 560 ----------n~a~~lq----------------------~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 560 ----------NPALPLQ----------------------TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred ----------Ccccccc----------------------CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 1111100 023556789999999988899999999988876443
No 123
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.15 E-value=4.4 Score=49.63 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhc
Q 001429 123 ITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKA 202 (1079)
Q Consensus 123 l~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~ 202 (1079)
.+-|.+..++|.-.... -+.. ..-..++..-+. +......|+.-|.-.....|+.... ||.++++ |.+
T Consensus 2 ie~lY~~~~~L~~a~d~-~~~~---~~y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~D-LcE 69 (556)
T PF05918_consen 2 IEKLYENYEILADAKDK-SQHE---EDYKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLD-LCE 69 (556)
T ss_dssp HHHHHHHHHHHHHTGGG-GGGH---HHHHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHH-HHT
T ss_pred HHHHHHHHhHhhcCCCc-ccCH---HHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHH-HHh
Confidence 45677778888754332 1111 122233333333 5788889999999999999987654 5567775 778
Q ss_pred CCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc
Q 001429 203 IEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ 282 (1079)
Q Consensus 203 ~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~ 282 (1079)
-++..++-||+..|-.||.+.+..|-+ +...|.|+|..........+-+++..+.+..| ++.+-.|...+.
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~ 140 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIE 140 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHH
Confidence 889999999999999999998766544 23446666664333222223344444433221 222333333333
Q ss_pred ---cCCHHHHHHHHHHHHH
Q 001429 283 ---YEDRQLVESVAICLIK 298 (1079)
Q Consensus 283 ---~~D~~V~~~A~~als~ 298 (1079)
..|..|++.++-.|..
T Consensus 141 ~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 141 SSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HS-HHHHHHHHHHHHH
T ss_pred hcccCchHHHHHHHHHHHH
Confidence 5677888887665543
No 124
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.15 E-value=14 Score=49.42 Aligned_cols=301 Identities=16% Similarity=0.135 Sum_probs=158.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCC---ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHD---AVPALCQRLKAIEYLDVAEQCLQALEKISRDQP 224 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~G---aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~ 224 (1079)
.+||.|.+.=-+| ++.+|- +++.|-...-...+.+|+.- +..-|+. =+.+..=.++|.++-||..|-++.+
T Consensus 998 kLIPrLyRY~yDP-~~~Vq~----aM~sIW~~Li~D~k~~vd~y~neIl~eLL~-~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDP-DKKVQD----AMTSIWNALITDSKKVVDEYLNEILDELLV-NLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred HhhHHHhhhccCC-cHHHHH----HHHHHHHHhccChHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHcCCC
Confidence 5789998887777 588885 44444333223334555432 3333331 2334456799999999999999876
Q ss_pred cchhccC---cccchhhccccCChHHH---HHHHHHHHHhhcCC-----CCCchhhhhccHHHHHHh-hccCCHHHHHHH
Q 001429 225 HACLEGG---AIMAALTYIDFFSTSIQ---RVALSTVANICKKL-----PSECPSHLMEAVPILSNL-LQYEDRQLVESV 292 (1079)
Q Consensus 225 ~~Il~~G---~L~~LL~lLd~~~~~vq---r~A~~~lsNlc~~~-----~~~~~~~v~~vlP~L~~L-L~~~D~~V~~~A 292 (1079)
..-+..- ...++....|.-..++. -.++.+++-+|-.. +...-+.+..++|.|..- +.+.-.+|+.-+
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 5322211 11223333343222332 24778888877653 111234556678887654 337778899999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCC------CccHHHHHHHHHH-HHhcCCCCChHHHHHHhh
Q 001429 293 AICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTL------SQPIYYGLIGLLV-KISSGSILNIGSVLKDIL 365 (1079)
Q Consensus 293 ~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~------~~~i~~~alr~L~-nlas~s~~gi~~~L~~lL 365 (1079)
..++.-+++. .+..+..-+ ..+|+.|++..+.-.+..+ ..++.+.++..+. ++++++| ..+++-.++
T Consensus 1152 i~tl~dl~Ks---sg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp--mmeTi~~ci 1225 (1702)
T KOG0915|consen 1152 IGTLMDLAKS---SGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP--MMETINKCI 1225 (1702)
T ss_pred HHHHHHHHHh---chhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc--HHHHHHHHH
Confidence 9999999986 444333322 3566777666654322110 1233344444443 4555555 233333333
Q ss_pred ccCCCCccchh---------hhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHH
Q 001429 366 STYDLSHGMSS---------PHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLI 436 (1079)
Q Consensus 366 ~~~~~e~~w~l---------sni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li 436 (1079)
.+.+.+.--.+ +-..-|++--.-.+|-+ |.-. +..+...+.-.++.-+||.+
T Consensus 1226 ~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~---L~~r---------------~~~emtP~sgKll~al~~g~- 1286 (1702)
T KOG0915|consen 1226 NYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISL---LVQR---------------LGSEMTPYSGKLLRALFPGA- 1286 (1702)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHH---HHHH---------------hccccCcchhHHHHHHhhcc-
Confidence 32211000000 00001111111111110 0000 11222333344455555543
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCC
Q 001429 437 QVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKD 488 (1079)
Q Consensus 437 ~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d 488 (1079)
. ..+..||+.+..|+..++-+..+++.+.++. .+++-++...+
T Consensus 1287 ---~-dRNesv~kafAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~e 1329 (1702)
T KOG0915|consen 1287 ---K-DRNESVRKAFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDE 1329 (1702)
T ss_pred ---c-cccHHHHHHHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCC
Confidence 3 2688999999999999999999999888874 45666665433
No 125
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.12 E-value=2.3 Score=50.15 Aligned_cols=187 Identities=16% Similarity=0.232 Sum_probs=120.3
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
..-+..++.+++..+..+.+-+|+.+|-+++.-...-.+..+ -..++-.+++.|+...++.+...|.|.|.-|+...|.
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 456778888887775667778888888887765443444442 2356778899999855788999999999999987663
Q ss_pred chhHHHhCCChHHHHHHhhcCC----C--HHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHH
Q 001429 183 SSGLLVRHDAVPALCQRLKAIE----Y--LDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVA 256 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~----~--~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~ls 256 (1079)
..++. +--++| |+|+.. + ..++|++ |+.-++...|..++. .+.+++.- .+...---++.++.
T Consensus 364 ---~l~Ds-tE~ai~-K~Leaa~ds~~~v~~~Aeed--~~~~las~~P~~~I~--~i~~~Ilt---~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 364 ---RLFDS-TEIAIC-KVLEAAKDSQDEVMRVAEED--CLTTLASHLPLQCIV--NISPLILT---ADEPRAVAVIKMLT 431 (516)
T ss_pred ---hhhch-HHHHHH-HHHHHHhCCchhHHHHHHHH--HHHHHHhhCchhHHH--HHhhHHhc---CcchHHHHHHHHHH
Confidence 33332 222233 454332 2 2233333 223334445544332 12222221 12222233556788
Q ss_pred HhhcCCCCCch-hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 257 NICKKLPSECP-SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 257 Nlc~~~~~~~~-~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
.+|.+.+.... ..+.++.|.+++--.+....|++.|..||.+|+..
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 89988776653 35778999999999999999999999999999864
No 126
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.99 E-value=2.3 Score=54.34 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=129.2
Q ss_pred HHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc---chhccCcccchhhcccc-C
Q 001429 168 LAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH---ACLEGGAIMAALTYIDF-F 243 (1079)
Q Consensus 168 ~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~---~Il~~G~L~~LL~lLd~-~ 243 (1079)
-|..-|+-..+-.|=.+...+.-|+.|..+ |||+++-.+|+---+-.-.+|-.-.+. ..++.+|-...++.|+. .
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVL-KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVL-KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHH-HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 344555666677777777777779999999 899999999887655555676543332 47888888888888876 3
Q ss_pred ChH-HHHH-HHHHHHHhhcCCCCCchhh-hhccHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCch
Q 001429 244 STS-IQRV-ALSTVANICKKLPSECPSH-LMEAVPILSNLLQYE-DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLI 319 (1079)
Q Consensus 244 ~~~-vqr~-A~~~lsNlc~~~~~~~~~~-v~~vlP~L~~LL~~~-D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll 319 (1079)
... -||. |+.+++-+|+|-+..+-.. ..+.+-+-...|+.+ ++-.+.=+|.||++|=.+| ...+.. =.+.++.
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~--~~Arw~-G~r~~Ah 644 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY--DEARWS-GRRDNAH 644 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc--chhhhc-cccccHH
Confidence 333 5665 8899999999976554343 346777777778874 6778888999999998774 222222 2356788
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCC
Q 001429 320 NQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGS 353 (1079)
Q Consensus 320 ~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s 353 (1079)
++|+.+|..+ -+.+...++.+||.+..+.
T Consensus 645 ekL~~~LsD~-----vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDP-----VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCc-----cHHHHHHHHHHHHHHhccc
Confidence 9999999876 6788899999999998863
No 127
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=91.92 E-value=2.5 Score=48.64 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=115.7
Q ss_pred CCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 001429 100 SSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI 179 (1079)
Q Consensus 100 ~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~ 179 (1079)
-+....++.+.+.+... ++.++-.|+..|.++ .....+|.|+.+|..+.+..++..|+|+|..+-+.
T Consensus 70 ~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~------------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 70 LGSEEAVPLLRELLSDE-DPRVRDAAADALGEL------------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc------------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 44456777777777766 777777777755442 23457889999999644789999999999998653
Q ss_pred CCcchhHHHhCCChHHHHHHhhcCCC------------HHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHH
Q 001429 180 FPRSSGLLVRHDAVPALCQRLKAIEY------------LDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSI 247 (1079)
Q Consensus 180 ~p~~~~~VV~~GaIp~Lv~kLl~~~~------------~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~v 247 (1079)
.++..|+. ++.... ..++.+++.+|+++-.. -.++.+..++.+....+
T Consensus 137 -----------~a~~~l~~-~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~--------~~~~~l~~~l~~~~~~v 196 (335)
T COG1413 137 -----------RALDPLLE-ALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP--------EAIPLLIELLEDEDADV 196 (335)
T ss_pred -----------hhhHHHHH-HhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh--------hhhHHHHHHHhCchHHH
Confidence 23666665 443332 24677777777776432 23556777777777788
Q ss_pred HHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 001429 248 QRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAE 301 (1079)
Q Consensus 248 qr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~ 301 (1079)
++.|..++..+.... ..+.+.+...+...+..+...++.+++++-.
T Consensus 197 r~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 197 RRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 888888888876553 4567888999999999999999999988754
No 128
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.79 E-value=3 Score=51.68 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=76.5
Q ss_pred hhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhh-ccHHHHHHh-hccCCHHHHHHHHHHHHHHHhccC
Q 001429 227 CLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLM-EAVPILSNL-LQYEDRQLVESVAICLIKIAEQLS 304 (1079)
Q Consensus 227 Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~-~vlP~L~~L-L~~~D~~V~~~A~~als~I~~~~~ 304 (1079)
=+...+++-|..-++..++.+|-.++.++..+....+ +..++ .++|.|.++ +.+.+..|+.+++-|+..+++.+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l- 460 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL- 460 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-
Confidence 3445566666666677788999999999999887654 55555 589999998 66788999999999999998542
Q ss_pred CCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcC
Q 001429 305 QSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSG 352 (1079)
Q Consensus 305 ~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~ 352 (1079)
+...-.+.+.++.+..... ++.+...++++..++..-
T Consensus 461 ------D~~~v~d~~lpi~~~~~~~-----dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 461 ------DKAAVLDELLPILKCIKTR-----DPAIVMGFLRIYEALALI 497 (700)
T ss_pred ------HHHHhHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHhh
Confidence 2111112344444444444 667777777777766543
No 129
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.73 E-value=0.51 Score=49.44 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=79.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcC--------CCCHHHHHHHHHHHH
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARH--------ETNPDIMLLAVRAIT 174 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~--------~~~~elq~~A~~aLt 174 (1079)
......++..|++. ... ...+..|+..|....-.-++.|+..|.+-.|+++|.. ..+.+++.++.+||.
T Consensus 65 ~~~p~~~i~~L~~~-~~~--~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 65 KSSPEWYIKKLKSR-PST--SKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp CHHHHHHHHHHTTT---H--HHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcc-Ccc--HHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 34566678888765 222 2566777665653322234678888889999998863 135689999999999
Q ss_pred HhhccCCcchhHHH-hCCChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001429 175 YLCDIFPRSSGLLV-RHDAVPALCQRLKAIEYLDVAEQCLQALEKIS 220 (1079)
Q Consensus 175 NIa~~~p~~~~~VV-~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs 220 (1079)
.|+..... ...|+ +.++|..|+. .+.++++.++.+++..|..||
T Consensus 142 al~n~~~G-~~~v~~~~~~v~~i~~-~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 142 ALMNTKYG-LEAVLSHPDSVNLIAL-SLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHTSSHHH-HHHHHCSSSHHHHHHH-T--TTSHHHHHHHHHHHHHHH
T ss_pred HHHccHHH-HHHHHcCcHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Confidence 99976544 45555 5789999995 788899999999999999886
No 130
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.55 E-value=0.9 Score=49.20 Aligned_cols=183 Identities=16% Similarity=0.067 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHhhccC--CcchhHHHh--CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch--hccCccc
Q 001429 161 TNPDIMLLAVRAITYLCDIF--PRSSGLLVR--HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC--LEGGAIM 234 (1079)
Q Consensus 161 ~~~elq~~A~~aLtNIa~~~--p~~~~~VV~--~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I--l~~G~L~ 234 (1079)
.+=+.+.+|..-|..++.+. ......++. ...++.++ +.+.....-++..|+.+++.++..-...+ .-...++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~-~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAII-KQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHH-H-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 35677888888888888776 333344432 14556666 35555567788999999999987644332 2234577
Q ss_pred chhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhcc-HHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHH
Q 001429 235 AALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEA-VPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEV 313 (1079)
Q Consensus 235 ~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~v-lP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~l 313 (1079)
.|+..+.....-+...|..++-.+|...+ ....+ ++.+...+.+..+.++..++.++..+...+..+...++.-
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 88888877666777888899999998764 11233 7888888999999999999999999987743112222211
Q ss_pred -HhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 314 -CSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 314 -v~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
.-..+++.+..+|..+ ++.+...+-+++..+.+.-+
T Consensus 173 ~~~~~l~~~l~~~l~D~-----~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDA-----DPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHCC
Confidence 1124667778888877 67788888888777755433
No 131
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.50 E-value=4.6 Score=47.76 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhc---cCcccchhhccccC-ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHh
Q 001429 205 YLDVAEQCLQALEKISRDQPHACLE---GGAIMAALTYIDFF-STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNL 280 (1079)
Q Consensus 205 ~~dl~Eqal~aL~nIs~d~~~~Il~---~G~L~~LL~lLd~~-~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~L 280 (1079)
..+-.+-|+.-|-.+..++.-.|.+ .-.|..++..|+.+ +....+-|+.++.-+|++.+..-++...-++-.+.+.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 3455555666555555555555655 23456677777764 5566677999999999987665555444444444444
Q ss_pred hccCCHHHHHHHHHHHHHHHhc
Q 001429 281 LQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 281 L~~~D~~V~~~A~~als~I~~~ 302 (1079)
=...+.+|...|.-+...+...
T Consensus 380 a~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHh
Confidence 4455556665555555555443
No 132
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.36 E-value=0.25 Score=57.67 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=91.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHH--HhCCChHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc-C-
Q 001429 154 VKLARHETNPDIMLLAVRAITYLCDIFPRSSGLL--VRHDAVPALCQRLKAI------EYLDVAEQCLQALEKISRD-Q- 223 (1079)
Q Consensus 154 V~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~V--V~~GaIp~Lv~kLl~~------~~~dl~Eqal~aL~nIs~d-~- 223 (1079)
...|.+. ....|.-|+|+++||.++.-..+..+ ....++-.++.+++.. ....+...+..+|+|+..- .
T Consensus 439 l~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~ 517 (728)
T KOG4535|consen 439 LMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP 517 (728)
T ss_pred HHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH
Confidence 3334443 36789999999999976422111110 0112333344444332 2466888999999999863 1
Q ss_pred ----CcchhccCcccchhhcc-ccCChHHHHHHHHHHHHhhcCC--CCCchhhhhccHHHHHHhhc-cCCHHHHHHHHHH
Q 001429 224 ----PHACLEGGAIMAALTYI-DFFSTSIQRVALSTVANICKKL--PSECPSHLMEAVPILSNLLQ-YEDRQLVESVAIC 295 (1079)
Q Consensus 224 ----~~~Il~~G~L~~LL~lL-d~~~~~vqr~A~~~lsNlc~~~--~~~~~~~v~~vlP~L~~LL~-~~D~~V~~~A~~a 295 (1079)
...-+..|.+..++... ......+|=+||.+++|+.++. +-++......++|+|..|+. +.+.+|+.+|.-+
T Consensus 518 i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~a 597 (728)
T KOG4535|consen 518 IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAA 597 (728)
T ss_pred hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhh
Confidence 11223333333333221 1124578899999999999985 33444555678999999975 5789999999998
Q ss_pred HHHHHh
Q 001429 296 LIKIAE 301 (1079)
Q Consensus 296 ls~I~~ 301 (1079)
++--..
T Consensus 598 L~vp~~ 603 (728)
T KOG4535|consen 598 LSVPGK 603 (728)
T ss_pred hcCCCC
Confidence 886653
No 133
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.16 E-value=20 Score=43.55 Aligned_cols=140 Identities=12% Similarity=0.113 Sum_probs=86.5
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC--CcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIF--PRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH 225 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~--p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~ 225 (1079)
.+.|-|-..|++. -.-+++++||+++.++..+ ++..+. +|..|- .+|.+....++=.|+++|..||.-.|.
T Consensus 264 q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv~~~~~~~-----~vs~L~-~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 264 QLRPFLNSWLSDK-FEMVFLEAARAVCALSEENVGSQFVDQ-----TVSSLR-TFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhccCHHHHHH-----HHHHHH-HHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 3567777777665 2568899999999988754 333333 456666 478888888888999999999998887
Q ss_pred chhccC-cccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 226 ACLEGG-AIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 226 ~Il~~G-~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
.|.-.+ -+..|+. .-.-. .+..++.-+-+.............+|.+++=+..+=..|+.+|+..|+..-
T Consensus 337 kv~vcN~evEsLIs---d~Nr~---IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 337 KVSVCNKEVESLIS---DENRT---ISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred eeeecChhHHHHhh---ccccc---chHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 654322 3443332 11111 244455545443333334444455555555555555567777777777653
No 134
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.10 E-value=2.7 Score=52.03 Aligned_cols=235 Identities=18% Similarity=0.231 Sum_probs=137.6
Q ss_pred CcccchhhccccC--ChHHHH-HHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCH
Q 001429 231 GAIMAALTYIDFF--STSIQR-VALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSS 307 (1079)
Q Consensus 231 G~L~~LL~lLd~~--~~~vqr-~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~ 307 (1079)
+++. -|.|||.. ....|+ .-+..++++-.+.|.. .....++|+|+..|. +.+++-...=++-.|+.+. +
T Consensus 271 ~~~~-aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~r--v~~~kiLP~L~~el~--n~~~vp~~LP~v~~i~~~~---s 342 (700)
T KOG2137|consen 271 PGLK-ALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPAR--VLFQKILPTLVAELV--NTKMVPIVLPLVLLIAEGL---S 342 (700)
T ss_pred chhh-hhhhcccccccCcHHHHHHHHHHHHhhccCCHH--HHHHhhhhHHHHHhc--cccccccccchhhhhhhcc---c
Confidence 3444 46677754 233443 4556678777665443 445789999999884 5567777777778887762 1
Q ss_pred HHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-----CChHHHHHHhhccCCCCccchhhhhccC
Q 001429 308 QMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI-----LNIGSVLKDILSTYDLSHGMSSPHMVDG 382 (1079)
Q Consensus 308 e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~-----~gi~~~L~~lL~~~~~e~~w~lsni~ag 382 (1079)
+.-+...+++.|..++.-..+ ..+..-++.=+-.|..--+ ..+++.|+..+....
T Consensus 343 ---~~~~~~~~~p~l~pi~~~~~~----~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~------------- 402 (700)
T KOG2137|consen 343 ---QNEFGPKMLPALKPIYSASDP----KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSD------------- 402 (700)
T ss_pred ---hhhhhhhhhHHHHHHhccCCc----ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcc-------------
Confidence 122334567888888774321 1111122222222222222 566666666655432
Q ss_pred ChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 001429 383 HCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYL 461 (1079)
Q Consensus 383 ~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~ 461 (1079)
-|||+.+ -..+|.+.+. =+ ..|+ +-|+|.|.+++..+.+.+||..||.++..++..
T Consensus 403 --~~iQ~~~---L~~lptv~e~----------------iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 403 --VQIQELA---LQILPTVAES----------------ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred --hhhHHHH---HHhhhHHHHh----------------cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 2444332 1112222221 00 2344 468999999988888999999999999999988
Q ss_pred CCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHH
Q 001429 462 SKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAID 524 (1079)
Q Consensus 462 ~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~ 524 (1079)
++.-.+.+.+- .++. -....|+.++++.+++.+.++-+.++. ..+.-+-|+-.+-
T Consensus 460 lD~~~v~d~~l-----pi~~-~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ev~~~~VlPlli 514 (700)
T KOG2137|consen 460 LDKAAVLDELL-----PILK-CIKTRDPAIVMGFLRIYEALALIIYSG--VEVMAENVLPLLI 514 (700)
T ss_pred HHHHHhHHHHH-----HHHH-HhcCCCcHHHHHHHHHHHHHHhhcccc--eeeehhhhhhhhh
Confidence 77654443331 2222 345789999999999999998876642 3344444444433
No 135
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=91.02 E-value=0.65 Score=44.18 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcCCCCCc-hhhhhccHHHHHHhh--ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 247 IQRVALSTVANICKKLPSEC-PSHLMEAVPILSNLL--QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 247 vqr~A~~~lsNlc~~~~~~~-~~~v~~vlP~L~~LL--~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
..+..+.+++|+|-..+..+ .....+.+|.+.+.- ...++-+++-|.|||-+++++ +++..+.|.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~---n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG---NPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC---CHHHHHHHHh
Confidence 35678999999998765443 222346788888874 445788999999999999998 7887776654
No 136
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=17 Score=48.61 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=93.2
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLV 347 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~ 347 (1079)
++.+..+|.|-+-=..+|++|+....-..--|+.. +...++..++ +++..|+-=|.+. .=.+...++-+|.
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D---~k~~vd~y~n-eIl~eLL~~lt~k-----ewRVReasclAL~ 1064 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITD---SKKVVDEYLN-EILDELLVNLTSK-----EWRVREASCLALA 1064 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccC---hHHHHHHHHH-HHHHHHHHhccch-----hHHHHHHHHHHHH
Confidence 45566777777766778988887665555555543 3334444332 3444444444443 2235567777788
Q ss_pred HHhcCCC-CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHH--------HhhcccccccCccchhhccccchhcc
Q 001429 348 KISSGSI-LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLK--------LLNELLPTSVGDQCVQLVLDKQSFLV 418 (1079)
Q Consensus 348 nlas~s~-~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~--------li~~LlP~l~~~~~~~~~~~r~~~l~ 418 (1079)
-|..|-| -.+.+.+..+ |.. +++..+-|.+-++ .+.-|.=.++. .
T Consensus 1065 dLl~g~~~~~~~e~lpel---------w~~---~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d--------------~ 1118 (1702)
T KOG0915|consen 1065 DLLQGRPFDQVKEKLPEL---------WEA---AFRVMDDIKESVREAADKAARALSKLCVRICD--------------V 1118 (1702)
T ss_pred HHHcCCChHHHHHHHHHH---------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------c
Confidence 8877776 3444444433 221 2333333333332 11111111111 1
Q ss_pred cChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH
Q 001429 419 DRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS 464 (1079)
Q Consensus 419 ~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~ 464 (1079)
.++...++++..++|.|++-=.-+.-.+||+-|+..+.+++.++..
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 3466678899999999997522233478999999999999987654
No 137
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=69 Score=42.31 Aligned_cols=256 Identities=18% Similarity=0.187 Sum_probs=142.4
Q ss_pred hhccCcccchhhc---cccC-ChHHHHHHHHHHHHhhcCCCCC--chhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 227 CLEGGAIMAALTY---IDFF-STSIQRVALSTVANICKKLPSE--CPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 227 Il~~G~L~~LL~l---Ld~~-~~~vqr~A~~~lsNlc~~~~~~--~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
+...+.+..+..+ .... +..+|+.+-.++--+|...+.. ....+.++...|..-.++.+.-++..+|-||..|.
T Consensus 646 ~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 646 VQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLL 725 (1176)
T ss_pred cccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3345555555433 3333 7889999999999999983322 23456778888888899999999999999999999
Q ss_pred hccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhc---CCCCC------hHHHHHHhhccC--C
Q 001429 301 EQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISS---GSILN------IGSVLKDILSTY--D 369 (1079)
Q Consensus 301 ~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas---~s~~g------i~~~L~~lL~~~--~ 369 (1079)
+. ++.+..+.+.. .|+.++-++... +......+..+|-+|+. .-+.| ++..+..++.-. .
T Consensus 726 ~~--~~~e~~~~i~k--~I~EvIL~~Ke~-----n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g 796 (1176)
T KOG1248|consen 726 KL--LSAEHCDLIPK--LIPEVILSLKEV-----NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG 796 (1176)
T ss_pred Hh--ccHHHHHHHHH--HHHHHHHhcccc-----cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc
Confidence 98 34454443332 344444444332 44444556666665552 11111 111111111110 0
Q ss_pred CCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHH
Q 001429 370 LSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCY 449 (1079)
Q Consensus 370 ~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~ 449 (1079)
.+.-...+.|. ++..++. +.- . .-+.+.+ ..++-. +..|..+...+|++
T Consensus 797 d~~~~~as~Iv-----ai~~il~---e~~----------------~--~ld~~~l----~~li~~-V~~~L~s~sreI~k 845 (1176)
T KOG1248|consen 797 DSTRVVASDIV-----AITHILQ---EFK----------------N--ILDDETL----EKLISM-VCLYLASNSREIAK 845 (1176)
T ss_pred cHHHHHHHHHH-----HHHHHHH---HHh----------------c--cccHHHH----HHHHHH-HHHHHhcCCHHHHH
Confidence 00000000000 0111110 000 0 0011112 222222 23466778999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhc-cCCh--hHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHh
Q 001429 450 GCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFT-RKDH--HVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDAL 526 (1079)
Q Consensus 450 ~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~-~~d~--~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L 526 (1079)
.|+..|...|+..+.+.+..-+. ..|.+++. ++|+ .+..-+..++|.|..|+.-.+...|.-|-...-+..|
T Consensus 846 aAI~fikvlv~~~pe~~l~~~~~-----~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 846 AAIGFIKVLVYKFPEECLSPHLE-----ELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHHHHHHcCCHHHHhhhHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 99999999999988877654332 22333333 2343 4557888999999999876666666666555555555
Q ss_pred c
Q 001429 527 L 527 (1079)
Q Consensus 527 ~ 527 (1079)
-
T Consensus 921 R 921 (1176)
T KOG1248|consen 921 R 921 (1176)
T ss_pred H
Confidence 3
No 138
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.66 E-value=0.4 Score=35.17 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=26.7
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 273 AVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 273 vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
++|.|.+++++++.+|+..|++||..|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999863
No 139
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.63 E-value=0.74 Score=47.55 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=88.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC 227 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I 227 (1079)
.+++.|.++|+.+.+..++.+|.++|+.|-.-.|-.-+.+.. ..+.- -..........-.+...+ ++. ..+.-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~--~~~~~---~~~~~~~~~~~~~l~~~~-~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQK--SLDSK---SSENSNDESTDISLPMMG-ISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccc--cCCcc---ccccccccchhhHHhhcc-CCC-chHHH
Confidence 378889999999988999999999999985544432221110 00000 000000111111111111 100 11122
Q ss_pred hccCcccchhhccccCChH-HHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 001429 228 LEGGAIMAALTYIDFFSTS-IQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAE 301 (1079)
Q Consensus 228 l~~G~L~~LL~lLd~~~~~-vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~ 301 (1079)
.-..++.+|+..|...+.. .+..++.++.++++........+...++|.+.+.+...+...++...+-++.|+.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2233556677777665443 3346888889998766556678889999999999997777888888877777653
No 140
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.60 E-value=2.2 Score=53.92 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhH-------H-----Hh
Q 001429 122 HITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGL-------L-----VR 189 (1079)
Q Consensus 122 ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~-------V-----V~ 189 (1079)
.++.+-.+.+-|.+-+++.- ..+-..|+.+|+.+ ++.-.|+-++.-|+.+.+..... + .-
T Consensus 794 al~~l~Wv~KaLl~R~~~~s-----~~ia~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF 865 (1030)
T KOG1967|consen 794 ALTVLAWVTKALLLRNHPES-----SEIAEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF 865 (1030)
T ss_pred HHHHHHHHHHHHHHcCCccc-----chHHHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH
Confidence 34444556666666554432 12455788888764 56667888888887765532211 1 12
Q ss_pred CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhc---cCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCc
Q 001429 190 HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLE---GGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC 266 (1079)
Q Consensus 190 ~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~---~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~ 266 (1079)
..++|.|++ .........+-.=+.+|.++-+.-|..++- .-.+|-+|+-|+-.+..++-.+..++.-+..-.+.-.
T Consensus 866 ~~ivP~l~~-~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVS-KFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHH-HhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 567899997 455666777788888999998877766543 3356778888888899999999999988876655555
Q ss_pred hhhhhccHHHHHHhhccCC---HHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHH
Q 001429 267 PSHLMEAVPILSNLLQYED---RQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLI 343 (1079)
Q Consensus 267 ~~~v~~vlP~L~~LL~~~D---~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~al 343 (1079)
-.++..++|.|..+=.+.| .-|++.|+.|+-.|+... |-..-.-....++..|+..|.+. ...+.+.|+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~---P~~~l~~fr~~Vl~al~k~LdDk-----KRlVR~eAv 1016 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL---PTKSLLSFRPLVLRALIKILDDK-----KRLVRKEAV 1016 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC---CCcccccccHHHHHHhhhccCcH-----HHHHHHHHH
Confidence 5778889999999866666 568899999999999853 22222223446778888888876 445666676
Q ss_pred HH
Q 001429 344 GL 345 (1079)
Q Consensus 344 r~ 345 (1079)
++
T Consensus 1017 ~t 1018 (1030)
T KOG1967|consen 1017 DT 1018 (1030)
T ss_pred HH
Confidence 65
No 141
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=1.1 Score=57.72 Aligned_cols=163 Identities=12% Similarity=0.145 Sum_probs=122.6
Q ss_pred cCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 147 DSLSPVLVKLARHE---TNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~---~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
..++|.++++.+.+ .+|++|..|.-||+-++..+.+... -..|.|..-+-.++.+-++-.++-+||.++-..
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 35788888888654 4799999999999999987766543 457999965555889999999999999998776
Q ss_pred CcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhcc
Q 001429 224 PHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQL 303 (1079)
Q Consensus 224 ~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~ 303 (1079)
|.-+=. --..+..-|...+..++++|+-+++++--+ +...|+|.++-++.+|-.++++|..-|=..+-.|+..
T Consensus 993 pnlie~--~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k- 1065 (1251)
T KOG0414|consen 993 PNLIEP--WTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK- 1065 (1251)
T ss_pred ccccch--hhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc-
Confidence 643311 112355556677899999999999999765 3567899999999999999999888877777777643
Q ss_pred CCCHHHHHHHHhCCchHHHHHhhcCC
Q 001429 304 SQSSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 304 ~~~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
. ..|. .++|-++.-|+.+
T Consensus 1066 --~----n~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 --G----NTIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred --c----cchh--hhchHHHHhhccC
Confidence 1 1222 4566666666644
No 142
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.36 E-value=27 Score=44.72 Aligned_cols=343 Identities=17% Similarity=0.169 Sum_probs=177.2
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
.++.+...+-.+..|.+...+...+.++...-. .....++++|.+++++.++ ...+++.|.-++.++.+-.....
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch
Confidence 445555555555566666666666666543322 1355778999999999987 47789999999999987655432
Q ss_pred hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHH--------------------HHhhccCC---c-c-hhccCcccchhhc
Q 001429 185 GLLVRHDAVPALCQRLKAIEYLDVAEQCLQAL--------------------EKISRDQP---H-A-CLEGGAIMAALTY 239 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL--------------------~nIs~d~~---~-~-Il~~G~L~~LL~l 239 (1079)
.++ +-..+.+++ ..+-....+........ .++.++.. . + ..+.+.+..++.+
T Consensus 312 -d~~-~~~~~~l~~-~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 312 -DVV-KSLTESLVQ-AVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred -hhh-hhhhHHHHH-HhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 222 234556653 44333322222111111 11111110 0 0 1111122222221
Q ss_pred --------------cccC-ChHHHHHHHHHHHHhhcCCCCCc-hhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhcc
Q 001429 240 --------------IDFF-STSIQRVALSTVANICKKLPSEC-PSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQL 303 (1079)
Q Consensus 240 --------------Ld~~-~~~vqr~A~~~lsNlc~~~~~~~-~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~ 303 (1079)
+..+ ..+.+..-.|..+++.-..|.-. ...+...+|.+...++..+..|+.+..|.++.+-.-
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v- 467 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV- 467 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-
Confidence 1111 22334445566666655544332 235678899999999999999999999988776543
Q ss_pred CCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCCh-HHHHHHhhccCCCCccchhh-----
Q 001429 304 SQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNI-GSVLKDILSTYDLSHGMSSP----- 377 (1079)
Q Consensus 304 ~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi-~~~L~~lL~~~~~e~~w~ls----- 377 (1079)
.+..--..+..-.++.++.+-... .-.+...+++.+-.++......+ -+.+..++..+-..++..+-
T Consensus 468 --~~v~g~~~~s~slLp~i~el~~d~-----~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 468 --NDVIGISTVSNSLLPAIVELAEDL-----LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred --cCcccchhhhhhhhhhhhhhccch-----hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 222222344455667777765433 23344555555555544333111 11222333222211111111
Q ss_pred hh-----ccCChHHHHHHH-HHhhcccccccCccchhhccccchhcccChHHH-----HHHHHhHHHHHHHHHhccCcHH
Q 001429 378 HM-----VDGHCNQVHEVL-KLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLL-----QNFGMDILPMLIQVVNSGANIF 446 (1079)
Q Consensus 378 ni-----~ag~~~qi~~vi-~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~-----~~f~~~llp~Li~v~~ss~~~~ 446 (1079)
|+ ..|..-+.+.++ ++++...-+.. ..|...+..-...+ ..+.+.++|++.++-. .....
T Consensus 541 ~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y--------~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~-D~van 611 (759)
T KOG0211|consen 541 NLPALVETFGSEWARLEEIPKLLAMDLQDNY--------LVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVK-DPVAN 611 (759)
T ss_pred HhHHHHHHhCcchhHHHhhHHHHHHhcCccc--------chhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhcc-CCchh
Confidence 10 233333333333 22222222100 11222111111111 2234689999999654 56788
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHh
Q 001429 447 VCYGCLSVINKLVYLSKSDMLIELLK 472 (1079)
Q Consensus 447 VR~~~l~ai~~iv~~~~~~~L~~ll~ 472 (1079)
||-.++..+.+++.+.+.+...+.+.
T Consensus 612 VR~nvak~L~~i~~~L~~~~~~~~v~ 637 (759)
T KOG0211|consen 612 VRINVAKHLPKILKLLDESVRDEEVL 637 (759)
T ss_pred hhhhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999998877766553
No 143
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=90.08 E-value=18 Score=43.66 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 282 QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 282 ~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
...|..+..+|+.||+|+.-. ++...+.+++.|..+.+++.|........+..+.--..|+|=-++....
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~---s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~ 111 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFL---SPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP 111 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhC---CHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh
Confidence 446889999999999999976 7888899999999999999998654333345566668887777766655
No 144
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=23 Score=44.54 Aligned_cols=175 Identities=11% Similarity=0.153 Sum_probs=108.0
Q ss_pred hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHH
Q 001429 269 HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVK 348 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~n 348 (1079)
.....+|.|-.+|.|.+..|.-+|..++.++..- .+..+.. .+..|.-++.+. ...+.-.++|+|..
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~---~~r~l~p-----avs~Lq~flssp-----~~~lRfaAvRtLnk 308 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT---NSRELAP-----AVSVLQLFLSSP-----KVALRFAAVRTLNK 308 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc---CHhhcch-----HHHHHHHHhcCc-----HHHHHHHHHHHHHH
Confidence 3456788999999999999999999999988654 3333332 555666666655 55667789999999
Q ss_pred HhcCCC---CChHHHHHHhhccCCCCcc-chhhh-hccCChHHHHHHHHHhhcccccccCccchhhccccchhcc-cChH
Q 001429 349 ISSGSI---LNIGSVLKDILSTYDLSHG-MSSPH-MVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLV-DRPD 422 (1079)
Q Consensus 349 las~s~---~gi~~~L~~lL~~~~~e~~-w~lsn-i~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~-~~p~ 422 (1079)
+|...| ...-.-|..+++..++... .++.- +-.|+..-+..+.+.|...+--+-.. ---....+.+-++ .-|.
T Consensus 309 vAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDe-FKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 309 VAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDE-FKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccc-ceEEeHHHHHHHHhhccH
Confidence 999988 2222345556665554321 22221 24788888877777666554333321 0000001111111 1121
Q ss_pred HHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Q 001429 423 LLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYL 461 (1079)
Q Consensus 423 ~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~ 461 (1079)
+- ..+++.|.+++...+.++-++....+|..|+..
T Consensus 388 k~----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~ 422 (865)
T KOG1078|consen 388 KH----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE 422 (865)
T ss_pred HH----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh
Confidence 11 245566666666778899999999999999875
No 145
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=89.59 E-value=0.79 Score=43.61 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhh-cCCCHHHHHHHHHHHHHhhccCC
Q 001429 166 MLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLK-AIEYLDVAEQCLQALEKISRDQP 224 (1079)
Q Consensus 166 q~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl-~~~~~dl~Eqal~aL~nIs~d~~ 224 (1079)
.....+.|+|++-.++..-+.|.+.|+||.+++... +-.++=++|.|+||+.|++.+++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 346689999999999999999999999999987432 22368899999999999998875
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.40 E-value=26 Score=44.74 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=113.6
Q ss_pred CCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc
Q 001429 100 SSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI 179 (1079)
Q Consensus 100 ~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~ 179 (1079)
++..+.++.+...++-. .+.....++.++..++... +..........+..+++.|+.-.+ ..|.....||++|+..
T Consensus 302 at~~s~i~~L~~~~~l~-r~~~v~~cl~~l~~~~~~~--~~~~~~~~~~~l~~i~~sm~~~~s-~~~i~~~~CL~~i~~~ 377 (699)
T KOG3665|consen 302 ATLDSSIQALTYYLNLK-RPSEVSRCLNELLDLLKSL--DSTREYDISECLKLIINSMNTFSS-SNQIQGSACLIHIVKH 377 (699)
T ss_pred cchhHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHhcCC-hhhhhHHHHHHHHHHh
Confidence 34455666666655554 4556667778887766522 112233345567777777776543 7777889999999886
Q ss_pred CCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccC-ChHHHHHHHHHHHH-
Q 001429 180 FPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF-STSIQRVALSTVAN- 257 (1079)
Q Consensus 180 ~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~-~~~vqr~A~~~lsN- 257 (1079)
........-..-++..|+. .... ...+...+.+.+.+-.... ...+...-. .+..+++. ...+++.+.-++.+
T Consensus 378 ~~~~l~~~~~~~~l~~LLn-~v~~-~~~~~~~~~~~~~~~i~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 452 (699)
T KOG3665|consen 378 TKQRLSPLLVSLLLKVLLN-LVEK-LDTLDSNDELTLCNSIILL-LSLLVSRRK--LLSVLDHHEQDNIQQRLTVCLSIS 452 (699)
T ss_pred hhhccChHHHHHHHHHHHH-hhhc-ccccccchhHHHHHHHHHH-HHHHHHHHH--HhhccchhhhhhhhHHHHHhhcch
Confidence 5422222111122232222 1110 1112222222222210000 000000000 22222221 22333333322222
Q ss_pred -hhcCCCCCchhhhhccHHHHHHhhc---cCCHHHHHHHHH--HHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCC
Q 001429 258 -ICKKLPSECPSHLMEAVPILSNLLQ---YEDRQLVESVAI--CLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSR 331 (1079)
Q Consensus 258 -lc~~~~~~~~~~v~~vlP~L~~LL~---~~D~~V~~~A~~--als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~ 331 (1079)
.|.-.. ......+-++....++. -....+...++- ++.++++. +++....+++.|.+..+..++..-+
T Consensus 453 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~---~~~~C~~~l~~~g~~~~~~~l~~f~- 526 (699)
T KOG3665|consen 453 TACQVVS--ITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDE---NPETCKEFLDNGGMKLLFKCLESFD- 526 (699)
T ss_pred hHHHHHH--HHHhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcC---CHHHHHHHHhcccHHHHHHHHhhcc-
Confidence 221111 11122233333333321 111111111111 45566666 8999999999999999999998542
Q ss_pred CCCCccHHHHHHHHHHHHhcCCC
Q 001429 332 TTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 332 ~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
....+..+++.++|++...+
T Consensus 527 ---~~~~~~~il~~l~n~~~~~~ 546 (699)
T KOG3665|consen 527 ---NEELHRKILGLLGNLAEVLE 546 (699)
T ss_pred ---chhHHHHHHHHHHHHHHHhh
Confidence 56788899999999977554
No 147
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.30 E-value=12 Score=48.97 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=81.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC---CCCCc-hh
Q 001429 193 VPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK---LPSEC-PS 268 (1079)
Q Consensus 193 Ip~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~---~~~~~-~~ 268 (1079)
|+.++..+-.+...+..-.|+.-|..+|..-...+.=..++|.++.++......+|..|+.++..+... .++.+ ..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 688888777777888888899888888876544444345778888888888889999999999877554 33333 34
Q ss_pred hhhccHHHHHHhhcc-CCHHHHHHHHHHHHHHHhc
Q 001429 269 HLMEAVPILSNLLQY-EDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~-~D~~V~~~A~~als~I~~~ 302 (1079)
+..=++|.|..++.. ....|+..-+.||+-++..
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 456699999999998 4455666666677777653
No 148
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=14 Score=45.80 Aligned_cols=258 Identities=17% Similarity=0.168 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCC--HHHHHHHHHHHHHHHhccCCCHHHHHHHHhC-CchH
Q 001429 244 STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYED--RQLVESVAICLIKIAEQLSQSSQMLDEVCSH-GLIN 320 (1079)
Q Consensus 244 ~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D--~~V~~~A~~als~I~~~~~~~~e~i~~lv~~-gll~ 320 (1079)
+...+.-|+.+++|+-.. ++...+-+-+-.+|.+.+ .-|...|+.||.+|-.. +|+ ++.. +-..
T Consensus 124 n~~fv~LAL~~I~niG~r------e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~---spD----l~~~~~W~~ 190 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSR------EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRK---SPD----LVNPGEWAQ 190 (938)
T ss_pred CcHHHHHHHHHHHhhccH------hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhc---Ccc----ccChhhHHH
Confidence 334556688899998432 222222333346776655 45788999999999765 564 4444 5788
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC---CChHH-HHHHhhc---cC--C--------CCccchhhhh----
Q 001429 321 QTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI---LNIGS-VLKDILS---TY--D--------LSHGMSSPHM---- 379 (1079)
Q Consensus 321 ~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~---~gi~~-~L~~lL~---~~--~--------~e~~w~lsni---- 379 (1079)
+++.||... ...+.+.+...|..|+...| .+.++ ++..|.. .. + ..+-|-..++
T Consensus 191 riv~LL~D~-----~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlL 265 (938)
T KOG1077|consen 191 RIVHLLDDQ-----HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLL 265 (938)
T ss_pred HHHHHhCcc-----ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHH
Confidence 999999866 34556677888888888888 33333 3333322 11 1 1234543322
Q ss_pred -------ccCChHHHHHHHHHhhcccccccCccchhhccccchh----------cccChHHHHHHHHhHHHHHHHHHhcc
Q 001429 380 -------VDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSF----------LVDRPDLLQNFGMDILPMLIQVVNSG 442 (1079)
Q Consensus 380 -------~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~----------l~~~p~~~~~f~~~llp~Li~v~~ss 442 (1079)
-.++.-++.++++-|-+.....+...+....+++... +..+|+.+.+-++. |.+ |.+.
T Consensus 266 q~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~----Lg~-fls~ 340 (938)
T KOG1077|consen 266 QIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQ----LGQ-FLSH 340 (938)
T ss_pred HhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHH----HHH-Hhhc
Confidence 1344555555554222222111111011111222221 23456665554433 333 3345
Q ss_pred CcHHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHH-------------HHHHHHHHHHHhhhHH
Q 001429 443 ANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLI-------------LALEIAEMILQKLSDT 509 (1079)
Q Consensus 443 ~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~-------------~aLq~~e~Ll~k~p~~ 509 (1079)
-..-+|+-+|..++++++.... .+.++.. ..-.+.++-.-+|..+.. .|-+|++-|++=++.
T Consensus 341 rE~NiRYLaLEsm~~L~ss~~s---~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~t- 415 (938)
T KOG1077|consen 341 RETNIRYLALESMCKLASSEFS---IDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET- 415 (938)
T ss_pred ccccchhhhHHHHHHHHhccch---HHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh-
Confidence 6778899999999999887432 2222221 112233332245554432 344555555554442
Q ss_pred HHHHHHHhCHHHHHHHhcCCC
Q 001429 510 FLNSFVKEGVFFAIDALLTPE 530 (1079)
Q Consensus 510 ~~~~f~rEGv~~~I~~L~~~~ 530 (1079)
...=.||.++-+|.=|++..
T Consensus 416 -Ad~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 416 -ADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred -cchHHHHHHHHHHHHHHHHh
Confidence 33445777777777776543
No 149
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.21 E-value=6 Score=41.42 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCCh-HHH
Q 001429 118 DPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAV-PAL 196 (1079)
Q Consensus 118 d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaI-p~L 196 (1079)
||.++-.++..++.+...-. + + .+.++|.+...|.++ ++.++..|..+|+.+.....--. .|-+ ..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~---~-ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--N---L-VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV-----KGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--H---H-HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee-----hhhhhHHH
Confidence 46777888888888765321 1 2 356899999999999 69999999999999987533211 2433 666
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcc-CCcchhccCcccchhhccc
Q 001429 197 CQRLKAIEYLDVAEQCLQALEKISRD-QPHACLEGGAIMAALTYID 241 (1079)
Q Consensus 197 v~kLl~~~~~dl~Eqal~aL~nIs~d-~~~~Il~~G~L~~LL~lLd 241 (1079)
+ +++.-++.+++..|...+..++.. ++..+ ...++.++..|.
T Consensus 69 l-~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 69 L-KLLVDENPEIRSLARSFFSELLKKRNPNII--YNNFPELISSLN 111 (178)
T ss_pred H-HHHcCCCHHHHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHh
Confidence 7 466777899999999999999987 45444 223444444443
No 150
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=5.4 Score=51.39 Aligned_cols=260 Identities=12% Similarity=0.098 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC--c-ch--hccCcccch
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP--H-AC--LEGGAIMAA 236 (1079)
Q Consensus 162 ~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~--~-~I--l~~G~L~~L 236 (1079)
+..+++.|+|||.++..-.|+... .+..|+|+.. ..+.+.+++.-+.-+.+.+.+... . .+ +....+.-+
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a----~~~L~~lld~-~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l 631 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLA----DYVLPPLLDS-TLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL 631 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhc----ccchhhhhhh-hcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence 578999999999999988776543 3567888864 445678899888888888876531 1 01 112222221
Q ss_pred --------hhccccCChHHHHH-HHHHHHHhhcCCCCCchhhhh-ccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCC
Q 001429 237 --------LTYIDFFSTSIQRV-ALSTVANICKKLPSECPSHLM-EAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQS 306 (1079)
Q Consensus 237 --------L~lLd~~~~~vqr~-A~~~lsNlc~~~~~~~~~~v~-~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~ 306 (1079)
..+++...-.+.|. .+..+-++....+.-..+.+. +.--.|...+.+.+ .|++.|.|+++.++..+...
T Consensus 632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~ 710 (1133)
T KOG1943|consen 632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKA 710 (1133)
T ss_pred hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhc
Confidence 22222211123333 334444444443332223333 34445555564444 78899999999999765322
Q ss_pred HHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCC-C-----CChHHHHHHhhccCCCCccchhhhhc
Q 001429 307 SQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGS-I-----LNIGSVLKDILSTYDLSHGMSSPHMV 380 (1079)
Q Consensus 307 ~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s-~-----~gi~~~L~~lL~~~~~e~~w~lsni~ 380 (1079)
++.-+. .++.+.+.-+.... . ..+|..-.++-|. + +..-+.+.+++....++-.|+.+-
T Consensus 711 d~~~~~----~li~~~ls~~~~~~----~-----~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR-- 775 (1133)
T KOG1943|consen 711 DEGEEA----PLITRYLSRLTKCS----E-----ERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEAR-- 775 (1133)
T ss_pred Cchhhh----HHHHHHHHHhcCch----H-----HHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHH--
Confidence 222111 23333333333221 1 2333333333332 2 333344444443333332365531
Q ss_pred cCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhcc---CcHHHHHHHHHHHHH
Q 001429 381 DGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSG---ANIFVCYGCLSVINK 457 (1079)
Q Consensus 381 ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss---~~~~VR~~~l~ai~~ 457 (1079)
.+-|.++...+..+ .. ...++-..+|.+.|+-.|-+-+..+ +..-||+.++.++..
T Consensus 776 ---~~~V~al~~v~~~~----~~--------------~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~ 834 (1133)
T KOG1943|consen 776 ---QQNVKALAHVCKTV----TS--------------LLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSS 834 (1133)
T ss_pred ---HHHHHHHHHHHHHH----HH--------------hhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHh
Confidence 01111111100000 00 0123446677777887777754433 567899999999999
Q ss_pred hhccCC
Q 001429 458 LVYLSK 463 (1079)
Q Consensus 458 iv~~~~ 463 (1079)
++....
T Consensus 835 ~~~~l~ 840 (1133)
T KOG1943|consen 835 LLDTLS 840 (1133)
T ss_pred hhhhhc
Confidence 988754
No 151
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.84 E-value=14 Score=43.42 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=129.2
Q ss_pred HHHHHHHHhccCCCchhh-hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCC
Q 001429 126 LTELCEVLSFAMEDSLSS-MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE 204 (1079)
Q Consensus 126 l~~L~~lLs~~~~~~~~~-~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~ 204 (1079)
++.|.+++.. .+.+.. ..-..+.+.+..+|-++ +.++.-.|-|++.|+..+ ++..+.+.+.+ ++.|+-+-+..+
T Consensus 4 ~N~Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d-~~~l~~~~~l~-id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKR--HPTLKYDLVLSFFGERIQCMLLSD-SKEVRAAGYRILRYLISD-EESLQILLKLH-IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHh--CchhhhhhhHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC-HHHHHHHHHcC-CchhhHhhhccc
Confidence 3455555542 233322 33334566666556665 489999999999999875 45667777766 555554555544
Q ss_pred --CHHHHHHHHHHHHHhhccC-CcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhh
Q 001429 205 --YLDVAEQCLQALEKISRDQ-PHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLL 281 (1079)
Q Consensus 205 --~~dl~Eqal~aL~nIs~d~-~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL 281 (1079)
+..=+|||+.-+..+..-. ...-+-.|.+.+++......+....+.|+-++.-+|-..| ....-.+.+..|.+.+
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRAL 156 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHH
Confidence 4445779999998887652 2233456777888888888888899999999999997754 3445578899999998
Q ss_pred ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhh
Q 001429 282 QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLL 326 (1079)
Q Consensus 282 ~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL 326 (1079)
......+.+..++++.++.+ +|...+.+...--+..++.-+
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd----~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLD----SPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred HhccHhHHHHHHHHHHHHhC----CcchhhhhcCCccHHHHHHhh
Confidence 87666699999999999997 466666555432244444433
No 152
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.51 E-value=6.4 Score=45.60 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=134.6
Q ss_pred hhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc-----hhHHHhC--CChHHHHHHhhcCCCHHHHHHHHHH
Q 001429 143 SMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS-----SGLLVRH--DAVPALCQRLKAIEYLDVAEQCLQA 215 (1079)
Q Consensus 143 ~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~-----~~~VV~~--GaIp~Lv~kLl~~~~~dl~Eqal~a 215 (1079)
.+...++++.|+..|..= +.|.+..++.+.+|+.....+. +.+++.+ .++..|+. ..+.+|++-.|-..
T Consensus 71 Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~---gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLR---GYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHH---GGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHH---HhcCccccchHHHH
Confidence 356779999999999887 5999999999999998765443 3344433 23344432 33456666666666
Q ss_pred HHHhhccC--CcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhh----hhccHHHHHHhhccCCHHHH
Q 001429 216 LEKISRDQ--PHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSH----LMEAVPILSNLLQYEDRQLV 289 (1079)
Q Consensus 216 L~nIs~d~--~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~----v~~vlP~L~~LL~~~D~~V~ 289 (1079)
|.-.++.. ...|+....+..+.+|++...-++-..|..++.-+-...+.-.... -..++.....||.+++--++
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 66666554 2457888888889999988888999999999887644322111112 23477788999999998899
Q ss_pred HHHHHHHHHHHhccCCCHHH-HHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcC
Q 001429 290 ESVAICLIKIAEQLSQSSQM-LDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSG 352 (1079)
Q Consensus 290 ~~A~~als~I~~~~~~~~e~-i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~ 352 (1079)
.+++-.|+.|.-.= ++-.. ...+-+..-+..++.||.+. +.+++..|..++-..+..
T Consensus 227 rqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~-----sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDK-----SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S------HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCc-----chhhhHHHHHHHHHHHhC
Confidence 99999999987531 22232 23333456788899999977 788888888887776554
No 153
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.20 E-value=11 Score=48.42 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=119.9
Q ss_pred HhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCC
Q 001429 112 CLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHD 191 (1079)
Q Consensus 112 ~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~G 191 (1079)
.+-+. +-..+.+|+..+-.+++-.. ....-...+++-.+..+...+.|..+...|+-+|.-|+.+........+ .+
T Consensus 261 ~~~s~-~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~ 336 (815)
T KOG1820|consen 261 EMLSK-KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KN 336 (815)
T ss_pred hhhcc-chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hh
Confidence 34454 77888999999988876332 1111234567777888877776788888999999999988765433322 37
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC-CCCC--chh
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK-LPSE--CPS 268 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~-~~~~--~~~ 268 (1079)
+.|.|+.++-+ ....+.+-++.++-.++.-.+- .-..+.++.++.. ...-+|.-||.+.+.|-. .++. .-.
T Consensus 337 v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~~l----~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 337 VFPSLLDRLKE-KKSELRDALLKALDAILNSTPL----SKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred hcchHHHHhhh-ccHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 88999986654 4567777777777666652221 1112333344444 333445556666665543 3322 234
Q ss_pred hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 269 HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
.+..++|.++...+..|..|+..|..|++-+..-
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999887653
No 154
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=88.18 E-value=2.4 Score=43.60 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=93.7
Q ss_pred hhhhccCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCC--CHHHHHHHHH
Q 001429 142 SSMMADSLSPVLVKLARHETN-----PDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE--YLDVAEQCLQ 214 (1079)
Q Consensus 142 ~~~~~~g~Vp~LV~lL~~~~~-----~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~--~~dl~Eqal~ 214 (1079)
..|+..+.++.|++++..+.. .++.-.+..|+..++++.--+++ .++...|...+. ..... +..+.+.|+.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~-~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIAS-YVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHH-HHccccccchHHHHHHH
Confidence 358888999999999988753 36777888899999997654554 444445555554 33333 5889999999
Q ss_pred HHHHhhccCCc---chhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCc
Q 001429 215 ALEKISRDQPH---ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC 266 (1079)
Q Consensus 215 aL~nIs~d~~~---~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~ 266 (1079)
.|+++.-.++. .|-++=-++.|+.+|...+..+|.+|+..+--+..+.+...
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 99999987654 35566678889999998899999999999988888775544
No 155
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.18 E-value=23 Score=43.96 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHH-HHHHHHHHHHHhhccCCcchhHH
Q 001429 109 ILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPD-IMLLAVRAITYLCDIFPRSSGLL 187 (1079)
Q Consensus 109 lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~e-lq~~A~~aLtNIa~~~p~~~~~V 187 (1079)
|.+.|.+. |+..+.-||..+.++=+.. ..+. +-+.+-++|-++++.+ +..-||-||..+...+|+.
T Consensus 116 iknDL~sr-n~~fv~LAL~~I~niG~re---~~ea-----~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---- 182 (938)
T KOG1077|consen 116 IKNDLSSR-NPTFVCLALHCIANIGSRE---MAEA-----FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---- 182 (938)
T ss_pred HHhhhhcC-CcHHHHHHHHHHHhhccHh---HHHH-----hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc----
Confidence 33344555 8888888888888763322 1122 2233336666665444 5668899999999888763
Q ss_pred HhC-CChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 001429 188 VRH-DAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP 224 (1079)
Q Consensus 188 V~~-GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~ 224 (1079)
++- +-+..+++ ||.-....+.-.+..-++-|+...|
T Consensus 183 ~~~~~W~~riv~-LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 183 VNPGEWAQRIVH-LLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred cChhhHHHHHHH-HhCccccceeeehHHHHHHHHHcCC
Confidence 333 34566663 7766667777777777777777654
No 156
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=88.04 E-value=7.8 Score=45.44 Aligned_cols=97 Identities=24% Similarity=0.253 Sum_probs=64.0
Q ss_pred CchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchh-hhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 001429 102 DHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLS-SMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIF 180 (1079)
Q Consensus 102 ~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~-~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~ 180 (1079)
+...+..|+++|.+......+..++.+|+..+. .+.+. .|-..|++..+++.+....+..+--.|+-|+.++....
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~---~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d 95 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA---DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD 95 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC---CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC
Confidence 467788899999866566888889988888653 44454 48889999999999965533334445555666666544
Q ss_pred CcchhHHHhCCChHHHHHHhhc
Q 001429 181 PRSSGLLVRHDAVPALCQRLKA 202 (1079)
Q Consensus 181 p~~~~~VV~~GaIp~Lv~kLl~ 202 (1079)
....+.+.+.+.+..++ +|+.
T Consensus 96 ~~~~~l~~~~~~~~ll~-~Ll~ 116 (361)
T PF07814_consen 96 GLNMHLLLDRDSLRLLL-KLLK 116 (361)
T ss_pred CcchhhhhchhHHHHHH-HHhc
Confidence 44344333445555545 5666
No 157
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=1.7 Score=51.85 Aligned_cols=121 Identities=10% Similarity=0.055 Sum_probs=93.8
Q ss_pred hhccCcccchhhccccCChHHHHHHHHHHHHhhcCCC-CCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCC
Q 001429 227 CLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLP-SECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQ 305 (1079)
Q Consensus 227 Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~-~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~ 305 (1079)
..++.+...|++.|+...+-+.-.+...+.|..-.-. -..+-.-.+++-+|++++.+.|..++.+..|.+.++.-+..
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq- 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ- 505 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc-
Confidence 4556677788999988777777777777777654432 22333446799999999999999999999999999998753
Q ss_pred CHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 306 SSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 306 ~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
+.++.+.+..-| +..++.+.+.+ .-.++.+++.+|.|+...+.
T Consensus 506 ~~ekf~~Lakig-~~kvl~~~NDp-----c~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 506 KNEKFKFLAKIG-VEKVLSYTNDP-----CFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred chhhhhhHHhcC-HHHHHHHhcCc-----ccccHHHHHHHHHhcccccc
Confidence 567788777665 67888888766 66788999999999976443
No 158
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.66 E-value=0.66 Score=43.82 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccCCcchhc--cCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHH
Q 001429 210 EQCLQALEKISRDQPHACLE--GGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQ 287 (1079)
Q Consensus 210 Eqal~aL~nIs~d~~~~Il~--~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~ 287 (1079)
..++++|..++..-+..+-+ .-.+++++..++..+..+.-.|+.++-|+++.....-+....++++.|..++...|+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 34667777776654443322 4468889999988899999999999999998765555667789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001429 288 LVESVAICLIKI 299 (1079)
Q Consensus 288 V~~~A~~als~I 299 (1079)
|+..| +.+-++
T Consensus 84 Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 84 VRSAA-ELLDRL 94 (97)
T ss_pred HHHHH-HHHHHH
Confidence 77766 444433
No 159
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.60 E-value=1.9 Score=40.29 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=64.8
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
..+++.+..|++. .+-++-.|+..|++++...+ .......+++..+...|+++ ++-+-+.|..+|+.+++..|+
T Consensus 3 ~~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD- 76 (92)
T ss_pred HHHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-
Confidence 4578888999887 78899999999999886544 11222346788888888888 689999999999999998775
Q ss_pred hhHHHhCCChHHHHHH
Q 001429 184 SGLLVRHDAVPALCQR 199 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~k 199 (1079)
.++|.|++.
T Consensus 77 -------~vl~~L~~~ 85 (92)
T PF10363_consen 77 -------EVLPILLDE 85 (92)
T ss_pred -------HHHHHHHHH
Confidence 346777753
No 160
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.45 E-value=22 Score=40.40 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=102.7
Q ss_pred CcHHHHH-HhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 148 SLSPVLV-KLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA 226 (1079)
Q Consensus 148 g~Vp~LV-~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~ 226 (1079)
+++..|| -.++++ ++.++..|.+||+-.+--..+.+. ..++.|.. .++.+...++..|+.+|..|..-++..
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~-~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQ-ALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 4444444 455666 589999999999998876554333 23677775 456779999999999999998766543
Q ss_pred hhc-----------cCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc----cCCHHHHHH
Q 001429 227 CLE-----------GGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ----YEDRQLVES 291 (1079)
Q Consensus 227 Il~-----------~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~----~~D~~V~~~ 291 (1079)
+++ ...+..+.++++.....+|..|+-.++-+.-.....+ ...++-.|+-+-. .++.+++.-
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 332 2334556667777788899999999998755432222 1233444433322 234555544
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcC
Q 001429 292 VAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNL 328 (1079)
Q Consensus 292 A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~ 328 (1079)
-...|-..+.+ ++++ |..+....++.+-.+...
T Consensus 176 L~~Ffp~y~~s---~~~~-Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 176 LSVFFPVYASS---SPEN-QERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHcC---CHHH-HHHHHHHHHHHHHHHHhC
Confidence 44444444433 4444 344445556666665554
No 161
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=57 Score=42.23 Aligned_cols=332 Identities=13% Similarity=0.087 Sum_probs=162.6
Q ss_pred chhHHHHHHHh-----ccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q 001429 103 HGKLRSILACL-----SEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLC 177 (1079)
Q Consensus 103 ~~~l~~lv~~L-----~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa 177 (1079)
.+.++.++.+. ++. -..++-.|+|-+...-++.=.++ ..-..++..-.++|..+.+..++.+|+-||--+.
T Consensus 456 ~~~mE~flv~hVfP~f~s~-~g~Lrarac~vl~~~~~~df~d~---~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI 531 (1010)
T KOG1991|consen 456 KSQMEYFLVNHVFPEFQSP-YGYLRARACWVLSQFSSIDFKDP---NNLSEALELTHNCLLNDNELPVRVEAALALQSFI 531 (1010)
T ss_pred HHHHHHHHHHHhhHhhcCc-hhHHHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHH
Confidence 35666665553 444 55788888998887644322211 1223456666777774446789999999999999
Q ss_pred ccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch------hccCcccchhhcccc---CC---h
Q 001429 178 DIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC------LEGGAIMAALTYIDF---FS---T 245 (1079)
Q Consensus 178 ~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I------l~~G~L~~LL~lLd~---~~---~ 245 (1079)
+..+..-..+- -.||.++++||.....-=-+--..+++.|....+..+ +-..-....++++.. .+ .
T Consensus 532 ~~~~~~~e~~~--~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~d 609 (1010)
T KOG1991|consen 532 SNQEQADEKVS--AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDD 609 (1010)
T ss_pred hcchhhhhhHh--hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccch
Confidence 87664322232 3467777778766532222333344555544332211 111222233444432 11 1
Q ss_pred HHHHHHHH---HHHHhhcCCCC-C-chhhhh-ccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCch
Q 001429 246 SIQRVALS---TVANICKKLPS-E-CPSHLM-EAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLI 319 (1079)
Q Consensus 246 ~vqr~A~~---~lsNlc~~~~~-~-~~~~v~-~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll 319 (1079)
.-+-.|+- +++-+-..... + -+..+. -++|.+..+|.+.-.++.+++|-.+.+++-- .++. ... -=|++
T Consensus 610 dk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~I-sp~-mW~ll 684 (1010)
T KOG1991|consen 610 DKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEI-SPI-MWGLL 684 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hccc-CHH-HHHHH
Confidence 11222222 22222221111 1 122233 3677777778888888888888888777643 1111 000 01445
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC----------CChHHHHHHhhccCCCCccchhhhhccCChHHHHH
Q 001429 320 NQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI----------LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHE 389 (1079)
Q Consensus 320 ~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~----------~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~ 389 (1079)
+-+.+++... ...-++...-+|-|+.+... ..+..++..+|++...+ -..+..
T Consensus 685 ~li~e~~~~~-----~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~------------D~d~~~ 747 (1010)
T KOG1991|consen 685 ELILEVFQDD-----GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGE------------DSDCES 747 (1010)
T ss_pred HHHHHHHhhh-----hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCc------------hHHHHH
Confidence 5555555533 23345556666666544332 23444555555543211 111111
Q ss_pred HHHHhhcccccccCccchhhccccchhcccChH-HHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHH
Q 001429 390 VLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPD-LLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLI 468 (1079)
Q Consensus 390 vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~-~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~ 468 (1079)
+.+++..++=.+ ++..+ .+..|+...+.-|... ..+...|.-|+.++.+++++-....|.
T Consensus 748 a~kLle~iiL~~----------------kg~~dq~iplf~~~a~~~l~~~---~e~s~~~~~~leVvinalyynP~ltL~ 808 (1010)
T KOG1991|consen 748 ACKLLEVIILNC----------------KGLLDQYIPLFLELALSRLTRE---VETSELRVMLLEVVINALYYNPKLTLG 808 (1010)
T ss_pred HHHHHHHHHHHh----------------cCcHhhHhHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHcCcHHHHH
Confidence 111111110000 01011 1223333222222211 235678999999999999996666666
Q ss_pred HHHhcCCchHHHh
Q 001429 469 ELLKSANIPSFLA 481 (1079)
Q Consensus 469 ~ll~~~~i~s~La 481 (1079)
-+-+.+-..+|..
T Consensus 809 iLe~~~~~~~ff~ 821 (1010)
T KOG1991|consen 809 ILENQGFLNNFFT 821 (1010)
T ss_pred HHHHcCCcccHHH
Confidence 5555544444433
No 162
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.10 E-value=32 Score=40.49 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC----------CCHHHHHHHHHHHHHhhccCCcchhHH
Q 001429 118 DPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE----------TNPDIMLLAVRAITYLCDIFPRSSGLL 187 (1079)
Q Consensus 118 d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~----------~~~elq~~A~~aLtNIa~~~p~~~~~V 187 (1079)
|...++.|-..|.+.|...++.+-.. ....-++.|++.++.+ .+.++-.+|.++|+++... |+.+..+
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~-~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l 83 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQ-ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL 83 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence 55667777777777776555433221 1223455555555421 2456777999999999843 3222222
Q ss_pred HhCC---ChHHHHHHhh-cCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhc---cc--cCChHHHHHHHHHHHHh
Q 001429 188 VRHD---AVPALCQRLK-AIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTY---ID--FFSTSIQRVALSTVANI 258 (1079)
Q Consensus 188 V~~G---aIp~Lv~kLl-~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~l---Ld--~~~~~vqr~A~~~lsNl 258 (1079)
-+.- .+...+..|. ......++..++|+|..= ..+..++...-+..++.. +. +.+..+...++.++-++
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 1111 2334443332 223578888899988752 234445544444444433 33 45888999999999999
Q ss_pred hcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 259 CKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 259 c~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
....|..-...+..-+|.|...+-+....++..|..+...+...
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~ 205 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKC 205 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 98776554445566889999998899989988877666665543
No 163
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.97 E-value=4.8 Score=49.29 Aligned_cols=187 Identities=16% Similarity=0.125 Sum_probs=126.9
Q ss_pred hhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 001429 143 SMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 143 ~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d 222 (1079)
.++.+|+.-+||.-|.++ =.|++..|+-.++.++...|..... ++..|++ .+.-++.+++.+|+.+|-.|+..
T Consensus 368 siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvD-MfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVD-MFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999887 4899999999999999999986644 5678886 67778899999999999999976
Q ss_pred CCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc-c-CCHHHHHHHHHHHHHHH
Q 001429 223 QPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ-Y-EDRQLVESVAICLIKIA 300 (1079)
Q Consensus 223 ~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~-~-~D~~V~~~A~~als~I~ 300 (1079)
-.+++..++.++..|+..+.++...+--.+.| |+- .+...+.-++-.|...|. + +| ..+.+.|+..|.
T Consensus 441 ---l~i~eeql~~il~~L~D~s~dvRe~l~elL~~-~~~---~d~~~i~m~v~~lL~~L~kyPqD---rd~i~~cm~~iG 510 (823)
T KOG2259|consen 441 ---LAIREEQLRQILESLEDRSVDVREALRELLKN-ARV---SDLECIDMCVAHLLKNLGKYPQD---RDEILRCMGRIG 510 (823)
T ss_pred ---heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCC---CcHHHHHHHHHHHHHHhhhCCCC---cHHHHHHHHHHh
Confidence 46778888889998887777765544444443 332 233444444444444433 2 23 346677899998
Q ss_pred hccCCCHHHHHHHHhCCchHHHHHhhc--CCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 301 EQLSQSSQMLDEVCSHGLINQTTHLLN--LNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 301 ~~~~~~~e~i~~lv~~gll~~Lv~LL~--~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
.+ ++..+..++ .++.+... +.....+...-+...|-++-|.+...+
T Consensus 511 qn---H~~lv~s~m-----~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p 558 (823)
T KOG2259|consen 511 QN---HRRLVLSNM-----GRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADP 558 (823)
T ss_pred cc---ChhhHHHHH-----HHHHHhcccccccCccccChhhhhhhhhhhhhhhhCC
Confidence 65 444333332 33333221 222345566666677777777777766
No 164
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.40 E-value=11 Score=46.44 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=38.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhccC---CCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC----
Q 001429 282 QYEDRQLVESVAICLIKIAEQLS---QSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI---- 354 (1079)
Q Consensus 282 ~~~D~~V~~~A~~als~I~~~~~---~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~---- 354 (1079)
...|.+.+.....|+..-..-|. ++...+..+++ .++|.+-.+ ........|++++-++..+.
T Consensus 235 ~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l---------~e~~kl~lLk~lAE~s~~~~~~d~ 304 (556)
T PF05918_consen 235 DPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL---------PEDRKLDLLKLLAELSPFCGAQDA 304 (556)
T ss_dssp -SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT--------------HHHHHHHHHHHHHTT----TH
T ss_pred CCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC---------ChHHHHHHHHHHHHHcCCCCcccH
Confidence 44566777666666655332221 23334444443 244433332 34556688888888877765
Q ss_pred CChHHHHHHhhccCC
Q 001429 355 LNIGSVLKDILSTYD 369 (1079)
Q Consensus 355 ~gi~~~L~~lL~~~~ 369 (1079)
...++.++.+|..+-
T Consensus 305 ~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 305 RQLLPSIFQLLKKYM 319 (556)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 455666666665543
No 165
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.23 E-value=5.4 Score=48.87 Aligned_cols=287 Identities=13% Similarity=0.071 Sum_probs=154.4
Q ss_pred CCCchhhhHHHHHHHhcCCC---chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccC-----CCchhhhhccCcHHHHH
Q 001429 83 DAEPRHRGLRELQRRRSSSD---HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAM-----EDSLSSMMADSLSPVLV 154 (1079)
Q Consensus 83 ~~~~~~~~l~~~~r~l~~~~---~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~-----~~~~~~~~~~g~Vp~LV 154 (1079)
|...+-+++.+++ +|+-|. ...+...++-++.+ +..++.+|++.+.-.-.+.- +..-... .+.+...++
T Consensus 211 D~~Vrt~A~eglL-~L~eg~kL~~~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl-~D~aF~~vC 287 (823)
T KOG2259|consen 211 DFRVRTHAVEGLL-ALSEGFKLSKACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEEKL-KDAAFSSVC 287 (823)
T ss_pred CcchHHHHHHHHH-hhcccccccHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhhhh-HHHHHHHHH
Confidence 3333444555543 344333 23455666666544 77888788766543322220 0000112 234455667
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHH-HHHHHHhhccC-C--------
Q 001429 155 KLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQC-LQALEKISRDQ-P-------- 224 (1079)
Q Consensus 155 ~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqa-l~aL~nIs~d~-~-------- 224 (1079)
+.+.+- +..++.+|+-+|+-+-..+.+.+..-++.-.+-.|-.+=.....+...++. =|-=|+=..+. |
T Consensus 288 ~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~ 366 (823)
T KOG2259|consen 288 RAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEE 366 (823)
T ss_pred HHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccc
Confidence 777766 477788899988888766555444333221111111000000111111111 01111111111 1
Q ss_pred cchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccC
Q 001429 225 HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLS 304 (1079)
Q Consensus 225 ~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~ 304 (1079)
..|+.+|+-.+++.=|..--..+.+.|+..+..++...| .| ...++-.|+..++.+...|+.+|..++..|+....
T Consensus 367 ~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA 442 (823)
T ss_pred cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--Cc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence 248888888877766654445788888888888876543 22 34678999999999999999999999999987533
Q ss_pred CCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-CChHHHHHHhhccCCC-----Cccc-hhh
Q 001429 305 QSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI-LNIGSVLKDILSTYDL-----SHGM-SSP 377 (1079)
Q Consensus 305 ~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~-~gi~~~L~~lL~~~~~-----e~~w-~ls 377 (1079)
-.. ..++.++..|... +.++.. +++-|-..++-++ ..+.-++..+|..-.+ +..| .+.
T Consensus 443 i~e---------eql~~il~~L~D~-----s~dvRe-~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~ 507 (823)
T KOG2259|consen 443 IRE---------EQLRQILESLEDR-----SVDVRE-ALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMG 507 (823)
T ss_pred ecH---------HHHHHHHHHHHhc-----CHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHH
Confidence 233 4455556666654 455544 4444444466666 3333344455543222 1222 233
Q ss_pred hhccCChHHHHHHHH
Q 001429 378 HMVDGHCNQVHEVLK 392 (1079)
Q Consensus 378 ni~ag~~~qi~~vi~ 392 (1079)
-|......+++++..
T Consensus 508 ~iGqnH~~lv~s~m~ 522 (823)
T KOG2259|consen 508 RIGQNHRRLVLSNMG 522 (823)
T ss_pred HHhccChhhHHHHHH
Confidence 455666677777764
No 166
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=14 Score=46.22 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=151.7
Q ss_pred ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCC
Q 001429 146 ADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKA-IEYLDVAEQCLQALEKISRDQP 224 (1079)
Q Consensus 146 ~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~-~~~~dl~Eqal~aL~nIs~d~~ 224 (1079)
...++|.+-.+|.+.| .-++..|..|+..|..... +.+. -.|-|+...|. -.++.-.+.|.-.|-.+-.
T Consensus 132 lepl~p~IracleHrh-sYVRrNAilaifsIyk~~~---~L~p---DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~--- 201 (948)
T KOG1058|consen 132 LEPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE---HLIP---DAPELIESFLLTEQDPSCKRNAFLMLFTTDP--- 201 (948)
T ss_pred hhhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh---hhcC---ChHHHHHHHHHhccCchhHHHHHHHHHhcCH---
Confidence 3567888888888884 8888888888888876421 1121 12444433332 2234444444443333221
Q ss_pred cchhccCcccchhhcc---ccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 001429 225 HACLEGGAIMAALTYI---DFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAE 301 (1079)
Q Consensus 225 ~~Il~~G~L~~LL~lL---d~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~ 301 (1079)
+.++..+...+ ..++...|-..+-.+-..|-..|... ...+..+.++|++++..|+-+|..+|..+..
T Consensus 202 -----ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 202 -----ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred -----HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh----hHHHHHHHHHHhcCCchhhhhhcceEEEccC
Confidence 22233333322 34567788888888888887655433 3457788889999888888888888777764
Q ss_pred ccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC---CChHHHHHHhhccCCCCcc---ch
Q 001429 302 QLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI---LNIGSVLKDILSTYDLSHG---MS 375 (1079)
Q Consensus 302 ~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~---~gi~~~L~~lL~~~~~e~~---w~ 375 (1079)
.|..+..- ...+++|+...+ +.++..-.+.-|..+..... .|.+=-+.++|..+.-+.| ..
T Consensus 273 ----~p~alk~A-----a~~~i~l~~kes----dnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktld 339 (948)
T KOG1058|consen 273 ----DPTALKAA-----ASTYIDLLVKES----DNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLD 339 (948)
T ss_pred ----CHHHHHHH-----HHHHHHHHHhcc----CcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 35444432 345666665432 23333445555666654443 3333334445555544432 22
Q ss_pred hh--hhccCChHHHHHHHHHhhcccccccCccchhhccccchhc---ccChHHHHHHHHhHHHHHHHHHhccCcHHHHHH
Q 001429 376 SP--HMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFL---VDRPDLLQNFGMDILPMLIQVVNSGANIFVCYG 450 (1079)
Q Consensus 376 ls--ni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l---~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~ 450 (1079)
++ =+..++-+++-.+++ -++...--.. ......-|..++ +.+.-.+..++..++|+|++-. +..+..--..
T Consensus 340 i~ldLvssrNvediv~~Lk--ke~~kT~~~e-~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fi-sD~N~~aas~ 415 (948)
T KOG1058|consen 340 IALDLVSSRNVEDIVQFLK--KEVMKTHNEE-SDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFI-SDSNEAAASD 415 (948)
T ss_pred HHHhhhhhccHHHHHHHHH--HHHHhccccc-cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 11 123566666666665 3333222221 000001122222 2222333344567788888855 4556766777
Q ss_pred HHHHHHHhhccCC
Q 001429 451 CLSVINKLVYLSK 463 (1079)
Q Consensus 451 ~l~ai~~iv~~~~ 463 (1079)
++..+.-++...+
T Consensus 416 vl~FvrE~iek~p 428 (948)
T KOG1058|consen 416 VLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHHhCc
Confidence 7777777766543
No 167
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=1.5e+02 Score=39.14 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=108.4
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCC-------CHHHHHHHHHHHHHhh
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET-------NPDIMLLAVRAITYLC 177 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~-------~~elq~~A~~aLtNIa 177 (1079)
.+..+++.++--+++..-.-|+-+|.++...+=-.+ ..+ ..+||.++.-|..+. ...++-.||.++-.++
T Consensus 380 vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp-s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~ 456 (1133)
T KOG1943|consen 380 VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP-SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFA 456 (1133)
T ss_pred HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch-HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHH
Confidence 444555544433345555577777777654332111 122 257788877776541 1234444544443343
Q ss_pred ccC-CcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHH
Q 001429 178 DIF-PRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVA 256 (1079)
Q Consensus 178 ~~~-p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~ls 256 (1079)
.+. |...+-++. ...+.|+..-+=-..+..+..|..||--..+..++. -.|++ ++...|+++...+.++--.++
T Consensus 457 Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~---p~Gi~-Lis~~dy~sV~~rsNcy~~l~ 531 (1133)
T KOG1943|consen 457 RAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAALQENVGRQGNF---PHGIS-LISTIDYFSVTNRSNCYLDLC 531 (1133)
T ss_pred hcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC---CCchh-hhhhcchhhhhhhhhHHHHHh
Confidence 332 222333331 112222211111234777888888885555543221 01233 666777776666655443333
Q ss_pred HhhcCCCCCchhhhhccHHHHHHh-hccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC
Q 001429 257 NICKKLPSECPSHLMEAVPILSNL-LQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 257 Nlc~~~~~~~~~~v~~vlP~L~~L-L~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
--.... -.+...++..|..- +.|=|.++++.|.|||..++.- .|+ .+..+.+++++....+.
T Consensus 532 ~~ia~~----~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~---~pk----~~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 532 VSIAEF----SGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT---EPK----YLADYVLPPLLDSTLSK 594 (1133)
T ss_pred HHHHhh----hhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh---hHH----hhcccchhhhhhhhcCC
Confidence 222111 12345566666555 7788999999999999998764 443 33356778888766654
No 168
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=83.76 E-value=37 Score=40.49 Aligned_cols=239 Identities=11% Similarity=0.128 Sum_probs=132.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccC------CcchhccCcccchhhcccc------CChHHH-HHHHHHHHHhhcCCCCC
Q 001429 199 RLKAIEYLDVAEQCLQALEKISRDQ------PHACLEGGAIMAALTYIDF------FSTSIQ-RVALSTVANICKKLPSE 265 (1079)
Q Consensus 199 kLl~~~~~dl~Eqal~aL~nIs~d~------~~~Il~~G~L~~LL~lLd~------~~~~vq-r~A~~~lsNlc~~~~~~ 265 (1079)
+|+.-....-+=.|+-..-+.+... ...|+++-|.+-+=.+|.. ...++- ..++.+++-.|+..+-.
T Consensus 18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA 97 (698)
T KOG2611|consen 18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA 97 (698)
T ss_pred HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence 4665555555555666566665542 1236777666655555532 233444 45888888899875544
Q ss_pred chhhhhccHHHHHHhhccC-CHH------HHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccH
Q 001429 266 CPSHLMEAVPILSNLLQYE-DRQ------LVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPI 338 (1079)
Q Consensus 266 ~~~~v~~vlP~L~~LL~~~-D~~------V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i 338 (1079)
.-+.+-+.+|+|..++... |++ +++++.-|+..++. .+.-.+.++..|.++.+.+.-.-.+. +. -
T Consensus 98 sh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~----~e~G~~~Lia~G~~~~~~Q~y~~~~~---~~-d 169 (698)
T KOG2611|consen 98 SHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT----AEAGLMTLIASGGLRVIAQMYELPDG---SH-D 169 (698)
T ss_pred cCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc----CCchhHHHHhcCchHHHHHHHhCCCC---ch-h
Confidence 4455667899999998753 333 88999999998875 35567789999999999987543321 11 1
Q ss_pred HHHHHHHHHHHhcCCC--CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchh
Q 001429 339 YYGLIGLLVKISSGSI--LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSF 416 (1079)
Q Consensus 339 ~~~alr~L~nlas~s~--~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~ 416 (1079)
..-++.++--.+++-+ ....+.+..++...... ..--....-.++.. |||.+.- ..+.+
T Consensus 170 ~alal~Vlll~~~~~~cw~e~~~~flali~~va~d-------f~~~~~a~KfElc~----lL~~vl~-------~~~~e- 230 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSETIERFLALIAAVARD-------FAVLHNALKFELCH----LLSAVLS-------SEYSE- 230 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHH-------HHHhhhHHHHHHHH----HHHHHHh-------CChHH-
Confidence 1122222222222222 12222222222211000 00000001112211 2221111 11111
Q ss_pred cccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH
Q 001429 417 LVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS 464 (1079)
Q Consensus 417 l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~ 464 (1079)
+..+|.....+...+..-+.+++.+.+.+.=|.-+|..+.||.+-+-.
T Consensus 231 ~~~~pl~~~~w~~~l~~G~~~IL~~kv~p~qr~pAL~Laa~~~hilG~ 278 (698)
T KOG2611|consen 231 LLHEPLRSMNWADYLRTGVVAILQNKVAPSQRLPALILAANMMHILGE 278 (698)
T ss_pred hccChhhhcchHHHHHHHHHHHHhcccCchhcChHHHHHHHHHHHhch
Confidence 223455444566677778888899999999999999999999885443
No 169
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.21 E-value=4.2 Score=36.35 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 289 VESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 289 ~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
++.|+||+.+|+. ++.-++.+-+.++++.++++....+ ...+.-.|..+|+-|++...
T Consensus 4 lKaaLWaighIgs----s~~G~~lL~~~~iv~~iv~~a~~s~----v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 4 LKAALWAIGHIGS----SPLGIQLLDESDIVEDIVKIAENSP----VLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHHhHhc----ChHHHHHHhhcCHHHHHHHHHHhCC----ccchHHHHHHHHHHHhCCHH
Confidence 5789999999986 4666777777899999999988653 34566688899999887654
No 170
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.91 E-value=56 Score=35.87 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=115.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhc
Q 001429 193 VPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLME 272 (1079)
Q Consensus 193 Ip~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~ 272 (1079)
+|.|+.++.+..+..++-..+.+|..++.... +...-.+..+..+.+......+-.+...+..+....+. .|..+++
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f~~L~~ 78 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HFPFLQP 78 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HHHHHHH
Confidence 57788778888899999999999999987651 11111222333333333334444566666666554322 2333333
Q ss_pred cHHH-HHHh---hc--cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhh-cCCCCCCCCccHHHHHHHH
Q 001429 273 AVPI-LSNL---LQ--YEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLL-NLNSRTTLSQPIYYGLIGL 345 (1079)
Q Consensus 273 vlP~-L~~L---L~--~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL-~~~~~~~~~~~i~~~alr~ 345 (1079)
++-. ..+. .. ...-++.-...+++..||.. .|+.- ..+++.|..+| .+. +..+..-++.+
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~---~p~~g-----~~ll~~ls~~L~~~~-----~~~~~alale~ 145 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS---RPDHG-----VDLLPLLSGCLNQSC-----DEVAQALALEA 145 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh---ChhhH-----HHHHHHHHHHHhccc-----cHHHHHHHHHH
Confidence 2211 1110 01 11223444445677778776 55522 24678888888 444 45567788889
Q ss_pred HHHHhcCCCCChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHH
Q 001429 346 LVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQ 425 (1079)
Q Consensus 346 L~nlas~s~~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~ 425 (1079)
|..+|...--++..+..-+...-..+ ..+.-++++.++ ..++|.+..+ .+...
T Consensus 146 l~~Lc~~~vvd~~s~w~vl~~~l~~~----------~rp~v~~~l~~l-~~l~~~~~~~----------------~e~~~ 198 (234)
T PF12530_consen 146 LAPLCEAEVVDFYSAWKVLQKKLSLD----------YRPLVLKSLCSL-FALVPQGAVD----------------SEEYE 198 (234)
T ss_pred HHHHHHHhhccHHHHHHHHHHhcCCc----------cchHHHHHHHHH-HHHhccccCC----------------hhhhh
Confidence 99998544455555555444432111 122233444454 3466766653 45566
Q ss_pred HHHHhHHHHHHHHHhccCc
Q 001429 426 NFGMDILPMLIQVVNSGAN 444 (1079)
Q Consensus 426 ~f~~~llp~Li~v~~ss~~ 444 (1079)
.|...++..|.+.- ...+
T Consensus 199 ~~~~~~l~~lW~~~-~~~~ 216 (234)
T PF12530_consen 199 ELKRQILQLLWEYT-SSSD 216 (234)
T ss_pred HHHHHHHHHHHhhc-cccc
Confidence 67778888888853 3434
No 171
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.36 E-value=2.2 Score=47.93 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHh--CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC--c
Q 001429 150 SPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVR--HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP--H 225 (1079)
Q Consensus 150 Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~--~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~--~ 225 (1079)
.-.+|.+|.+. +|.++..|..-|.++... +. +...+ .-.|+.+.+ |+.-... ++||+.+|.|++.+.. +
T Consensus 5 l~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~--~~~~~~~~~~lk~l~q-L~~~~~~--~~~a~~alVnlsq~~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSL-SPPVRKAAVEHLLGLTGR-GL--QSLSKYSEALLKDLTQ-LLKDLDP--AEPAATALVNLSQKEELRK 77 (353)
T ss_pred HHHHHHHhccC-ChHHHHHHHHHHhhcccc-ch--hhhccchhhhHHHHHH-HccCccc--ccHHHHHHHHHHhhHHHHH
Confidence 34688999998 799999999999888765 22 22222 235788885 6643333 9999999999998862 3
Q ss_pred chhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 226 ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 226 ~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
.+++. -+..++..+-......-+-+|-.++|+.+-
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 34443 222233333333334555677777887764
No 172
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=80.94 E-value=14 Score=38.08 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=92.0
Q ss_pred hhHHHhCCChHHHHHHhhcCCC------HHHHHHHHHHHHHhhccC--CcchhccCcccchhhccccC--ChHHHHHHHH
Q 001429 184 SGLLVRHDAVPALCQRLKAIEY------LDVAEQCLQALEKISRDQ--PHACLEGGAIMAALTYIDFF--STSIQRVALS 253 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~------~dl~Eqal~aL~nIs~d~--~~~Il~~G~L~~LL~lLd~~--~~~vqr~A~~ 253 (1079)
+..+++.|+++.|+. +.+.+. -++...++.|+-.+-.++ ...++...-+..+..|+... +.++++.|+.
T Consensus 4 A~EFI~~~Gl~~L~~-~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIK-MIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHH-HHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 456788899999995 666544 477788889888887654 34567777778888888764 5789999999
Q ss_pred HHHHhhcCCCCCchhhhh-c-cHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHH
Q 001429 254 TVANICKKLPSECPSHLM-E-AVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEV 313 (1079)
Q Consensus 254 ~lsNlc~~~~~~~~~~v~-~-vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~l 313 (1079)
++=+++-+.+.. +..|. + -++.|...|+..+++++.+|...+-.+--+ .+++..+.+
T Consensus 83 ILEs~Vl~S~~l-y~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k--A~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKL-YQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK--ADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHH-HHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--CChHHHHHH
Confidence 999999865432 34443 3 689999999999999999998776665543 244444433
No 173
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=80.39 E-value=44 Score=42.88 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc-hhccCcccchhhc
Q 001429 161 TNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA-CLEGGAIMAALTY 239 (1079)
Q Consensus 161 ~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~-Il~~G~L~~LL~l 239 (1079)
.++.+...+|.=+++++.+.+. ..+..+.+|.+.+ |..-+...+++.|..++.++..-.... =...-..+.+++.
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~-L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQ-LLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA 324 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhh-hhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH
Confidence 3677888888888888887665 5566788888885 776666788888888888887643222 1222233444444
Q ss_pred cccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCch
Q 001429 240 IDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLI 319 (1079)
Q Consensus 240 Ld~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll 319 (1079)
.+.....+-....-...-++....+ + ...-..+|....++.....++...+..=+-.++..+ +.+....+....++
T Consensus 325 ~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l--~~~~~~~i~~~~il 400 (759)
T KOG0211|consen 325 VEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL--NASCYPNIPDSSIL 400 (759)
T ss_pred hcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc--Ccccccccchhhhh
Confidence 4332222221111111112211111 0 112235677777777665555444333333333221 11111223334456
Q ss_pred HHHHHhhcCC
Q 001429 320 NQTTHLLNLN 329 (1079)
Q Consensus 320 ~~Lv~LL~~~ 329 (1079)
|.+..+....
T Consensus 401 p~~~~lv~d~ 410 (759)
T KOG0211|consen 401 PEVQVLVLDN 410 (759)
T ss_pred HHHHHHHhcc
Confidence 6666666543
No 174
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=80.24 E-value=1.6e+02 Score=36.33 Aligned_cols=174 Identities=10% Similarity=0.108 Sum_probs=106.9
Q ss_pred ccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhc
Q 001429 272 EAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISS 351 (1079)
Q Consensus 272 ~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas 351 (1079)
...|.|..-|.+.-..|.-+++.+++.++...- .++..+.. +..|-.+|.+. .....-.|+|+|..|+.
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~~~-----vs~L~~fL~s~-----rv~~rFsA~Riln~lam 332 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVDQT-----VSSLRTFLKST-----RVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHHHH-----HHHHHHHHhcc-----hHHHHHHHHHHHHHHHh
Confidence 345666666666667899999999999876521 34444443 34556666655 45566789999999999
Q ss_pred CCC---CChHHHHHHhhccCCCCc-cchhhhh-ccCChHHHHHHHHHhhcccccccCccchh--hccccchhcccChHHH
Q 001429 352 GSI---LNIGSVLKDILSTYDLSH-GMSSPHM-VDGHCNQVHEVLKLLNELLPTSVGDQCVQ--LVLDKQSFLVDRPDLL 424 (1079)
Q Consensus 352 ~s~---~gi~~~L~~lL~~~~~e~-~w~lsni-~ag~~~qi~~vi~li~~LlP~l~~~~~~~--~~~~r~~~l~~~p~~~ 424 (1079)
..| .-.-+-+..|+....+.. ..++..+ -.|+.+-|..++++|-..+.-+-++ .. ..++-+.+--.-|..-
T Consensus 333 ~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~--FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 333 KYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDG--FKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred hCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccC--ceEEeHHHHHHHHhhCcHHH
Confidence 999 222245667777665532 2333332 3799999999998665554333322 00 0001001000112221
Q ss_pred HHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC
Q 001429 425 QNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS 462 (1079)
Q Consensus 425 ~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~ 462 (1079)
. .++..|.+++...+.++.++.++.||..|+.+.
T Consensus 411 ~----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 411 L----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred H----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence 1 344555566666788999999999999999985
No 175
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.88 E-value=3.9 Score=40.08 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=59.4
Q ss_pred ccHHHHHHhh-ccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHh
Q 001429 272 EAVPILSNLL-QYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKIS 350 (1079)
Q Consensus 272 ~vlP~L~~LL-~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nla 350 (1079)
.++-.|..+| .+.|+.++.-||.=|+.++.. .|.-...+-+.|+=.++++||.+. ++.+...||.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~gr~ii~~lg~K~~vM~Lm~h~-----d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNGRNIIEKLGAKERVMELMNHE-----DPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-S-----SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhHHHHHHhcChHHHHHHHhcCC-----CHHHHHHHHHHHHHHH
Confidence 4677888888 566899999999999999986 577777676789999999999997 7889999999988765
Q ss_pred c
Q 001429 351 S 351 (1079)
Q Consensus 351 s 351 (1079)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 176
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=79.62 E-value=33 Score=40.56 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=76.1
Q ss_pred Cchhhhhc-cCcHHHHHHhhcCCC--CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhh---cCCCHHHHHHH
Q 001429 139 DSLSSMMA-DSLSPVLVKLARHET--NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLK---AIEYLDVAEQC 212 (1079)
Q Consensus 139 ~~~~~~~~-~g~Vp~LV~lL~~~~--~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl---~~~~~dl~Eqa 212 (1079)
..+..+.. ..+...|..+|++.. -+.+-..|+-.++.+.-..|.+-..+.++|.++.+++.+. -.+..|+.-..
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l 175 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL 175 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence 33445556 667888888888763 3567778999999999999999999999999999998666 22467887777
Q ss_pred HHHHHHhhccC--CcchhccCcccchhhcc
Q 001429 213 LQALEKISRDQ--PHACLEGGAIMAALTYI 240 (1079)
Q Consensus 213 l~aL~nIs~d~--~~~Il~~G~L~~LL~lL 240 (1079)
-.+|+-||-.. -+.+.+.+.+..++..+
T Consensus 176 P~~l~AicLN~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 176 PNVLSAICLNNRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred HHHHhHHhcCHHHHHHHHhcChHHHHHHHh
Confidence 78888888664 24466666666666554
No 177
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=79.59 E-value=1.1e+02 Score=34.26 Aligned_cols=227 Identities=15% Similarity=0.096 Sum_probs=127.5
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhcccc--CChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHH
Q 001429 200 LKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDF--FSTSIQRVALSTVANICKKLPSECPSHLMEAVPIL 277 (1079)
Q Consensus 200 Ll~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~--~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L 277 (1079)
-|.+++..+++.|++.|+.+...-+...+...-+..+++|+.. .+......|+..+..+.+...-. ...+..++..+
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-~~~~~~i~~~l 85 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-PESAVKILRSL 85 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-hhhHHHHHHHH
Confidence 4567889999999999999998888777777777878877532 24455555566666665433211 12233333333
Q ss_pred HHh--hccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC-
Q 001429 278 SNL--LQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI- 354 (1079)
Q Consensus 278 ~~L--L~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~- 354 (1079)
..- .+..-+..+..+...+..+.+. ..+.+..+ ..+.+..+++++.... +|....-+.+++..+.+.=+
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~-~~~fv~~~i~~~~gEk----DPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSM-GDDFVYGFIQLIDGEK----DPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhc-hhHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHhccc
Confidence 322 1223355666777777777765 22222221 2357778888776543 56655566666665544433
Q ss_pred CChHHHHHHhhccCC-----CCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHH
Q 001429 355 LNIGSVLKDILSTYD-----LSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGM 429 (1079)
Q Consensus 355 ~gi~~~L~~lL~~~~-----~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~ 429 (1079)
....+-|...+.++= +...-. ..-+++++...+. ..+... ..|+.
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp----~~IT~edLk~~L~----------------------~cl~s~----~~fa~ 207 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDP----YGITREDLKRALR----------------------NCLSST----PLFAP 207 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCC----CCCCHHHHHHHHH----------------------HHhcCc----HhhHH
Confidence 333333333333220 000000 0112333332222 111222 34667
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHH
Q 001429 430 DILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDM 466 (1079)
Q Consensus 430 ~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~ 466 (1079)
..+|.|++=+.++ ...+|..+|..+...+..-.+..
T Consensus 208 ~~~p~LleKL~s~-~~~~K~D~L~tL~~c~~~y~~~~ 243 (262)
T PF14500_consen 208 FAFPLLLEKLDST-SPSVKLDSLQTLKACIENYGADS 243 (262)
T ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHCCHHH
Confidence 7899999998765 66799999999998887544443
No 178
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.27 E-value=42 Score=42.40 Aligned_cols=251 Identities=15% Similarity=0.077 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHh
Q 001429 247 IQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYE-DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHL 325 (1079)
Q Consensus 247 vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~-D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~L 325 (1079)
+.|..+|+++.=..-. ...+...-+--.+.++|+.. |.-|+-.+..++.-++|.+.-+++....+. ..+...+..+
T Consensus 503 iRRRVa~ilg~Wvsvq--~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l-enlf~~lfkl 579 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQ--QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL-ENLFVLLFKL 579 (978)
T ss_pred HHHHHHHHHhhhhhee--chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH-HHHHHHHHHH
Confidence 5677888887765421 11233334566778889887 666778999999999998876777766665 3445555555
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHhc-CCC---------------------------CChHHHHHHhhcc--CCCCccc-
Q 001429 326 LNLNSRTTLSQPIYYGLIGLLVKISS-GSI---------------------------LNIGSVLKDILST--YDLSHGM- 374 (1079)
Q Consensus 326 L~~~~~~~~~~~i~~~alr~L~nlas-~s~---------------------------~gi~~~L~~lL~~--~~~e~~w- 374 (1079)
|..-+ ...+.+.++.+|+.+.. .++ +.++.+|.++... ....-+|
T Consensus 580 l~~~~----e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~ 655 (978)
T KOG1993|consen 580 LKAVE----ECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP 655 (978)
T ss_pred HHHHh----hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH
Confidence 54322 22233355555554422 222 2222222222211 0001111
Q ss_pred ------------------------------hhhhhccCChHHHHHHHHHhhcccccccCccchhhccccc-------hhc
Q 001429 375 ------------------------------SSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQ-------SFL 417 (1079)
Q Consensus 375 ------------------------------~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~-------~~l 417 (1079)
+++|+-. -..+++.++-.++|.+... + ..-+. -.+
T Consensus 656 fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~----l~p~ll~L~p~l~~~iE~s--t--e~L~t~l~Ii~sYil 727 (978)
T KOG1993|consen 656 FLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQK----LTPELLLLFPHLLYIIEQS--T--ENLPTVLMIISSYIL 727 (978)
T ss_pred HHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccc----cCHHHHHHHHHHHHHHHhh--h--hhHHHHHHHHHHHHh
Confidence 1122211 1112222223333333221 0 00111 123
Q ss_pred ccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC--CHHHHHHHHhcCCchHHHhhhhccCChhHH-HH
Q 001429 418 VDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS--KSDMLIELLKSANIPSFLAGVFTRKDHHVL-IL 494 (1079)
Q Consensus 418 ~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~--~~~~L~~ll~~~~i~s~La~iL~~~d~~~l-~~ 494 (1079)
-++++.++.+..+++-.+.+.+ .+||.+.+.++++++..+ +.+.+...+....++-.+-++.....++.+ ..
T Consensus 728 Ld~~~fl~~y~~~i~k~~~~~l-----~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~ 802 (978)
T KOG1993|consen 728 LDNTVFLNDYAFGIFKKLNDLL-----DDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGE 802 (978)
T ss_pred hccHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHH
Confidence 4677778888888888777765 468999999999999854 223444444444555555555444444444 34
Q ss_pred HHHHHH-HHHHhhhHHHHHHHHHhC
Q 001429 495 ALEIAE-MILQKLSDTFLNSFVKEG 518 (1079)
Q Consensus 495 aLq~~e-~Ll~k~p~~~~~~f~rEG 518 (1079)
-|+++- +++. .|+.|...+..-.
T Consensus 803 yl~vvaRi~l~-n~~~~msvlqt~~ 826 (978)
T KOG1993|consen 803 YLLVVARISLR-NPSLFMSVLQTKN 826 (978)
T ss_pred HHHHHHHHHhc-ChHHHHHHHHhhh
Confidence 455444 4444 5887765444433
No 179
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.82 E-value=7.7 Score=48.28 Aligned_cols=129 Identities=13% Similarity=0.002 Sum_probs=65.4
Q ss_pred cccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHH-
Q 001429 232 AIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQML- 310 (1079)
Q Consensus 232 ~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i- 310 (1079)
++..+.+.+......- ..|..++..+....+.++.+.+..+++.+..--......+...|+.+++.++..++.+....
T Consensus 358 a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 358 ALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444555555544321 23444455555444445544554444443322223466788888999999887544333211
Q ss_pred HHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhc
Q 001429 311 DEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILS 366 (1079)
Q Consensus 311 ~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~ 366 (1079)
..++ ..+++.+.+.|...... -+..-...+|++|||+... ..++.|..++.
T Consensus 437 ~~~~-~~~~~~l~~~l~~~~~~-~~~~~~~~~LkaLGN~g~~---~~i~~l~~~l~ 487 (574)
T smart00638 437 DFVL-EELLKYLHELLQQAVSK-GDEEEIQLYLKALGNAGHP---SSIKVLEPYLE 487 (574)
T ss_pred hhhH-HHHHHHHHHHHHHHHhc-CCchheeeHHHhhhccCCh---hHHHHHHHhcC
Confidence 1121 23566666666431000 0222345689999997442 23445555554
No 180
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.12 E-value=8.8 Score=35.91 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred chhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 235 AALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 235 ~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
..+.+|......++..++..++++.+... .....+..++..+...|.++|+-|--+|..+++.+++.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 34566666677888899999999998766 23344567889999999999999999999999999987
No 181
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.12 E-value=5.5 Score=35.64 Aligned_cols=67 Identities=10% Similarity=-0.007 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCC-HHHHHHHHHHHHHHHhccCCCHHHHHHHHhCC
Q 001429 247 IQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYED-RQLVESVAICLIKIAEQLSQSSQMLDEVCSHG 317 (1079)
Q Consensus 247 vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D-~~V~~~A~~als~I~~~~~~~~e~i~~lv~~g 317 (1079)
-.|.|+|+++|++.....-.+-...++++.++++-.+.+ -.|+--|.++++-|+. +.+-.+.|-+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~----T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS----TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC----CHHHHHHHHHcC
Confidence 468899999999876433333334579999999977554 4566667777777764 455555555444
No 182
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.60 E-value=2.3e+02 Score=36.51 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=37.7
Q ss_pred hHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhc
Q 001429 421 PDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKS 473 (1079)
Q Consensus 421 p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~ 473 (1079)
+..+..+++.++-.|.+-.+++-....-+.+...++..+-.-...+|.+.++.
T Consensus 754 ~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~ 806 (960)
T KOG1992|consen 754 PNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDG 806 (960)
T ss_pred HhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 33456677788888888888887777777777777777766666666666543
No 183
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.54 E-value=37 Score=44.64 Aligned_cols=195 Identities=15% Similarity=0.216 Sum_probs=120.8
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHH
Q 001429 109 ILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLV 188 (1079)
Q Consensus 109 lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV 188 (1079)
++...++. +...|..++..|..++-..+.+..+.+ -..||.+|=+++.. |..-...|--||.+|+. ++...
T Consensus 702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~-----i~~~~ 772 (1176)
T KOG1248|consen 702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILSLKEV-NVKARRNAFALLVFIGA-----IQSSL 772 (1176)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHhcccc-cHHHHhhHHHHHHHHHH-----HHhhh
Confidence 33334555 667888888888776644432222222 24677777667444 67778888888888883 22233
Q ss_pred hCC------ChHHHHHHhhc--CCCHHHHHHH-HHHHHHhhccCCcchhccCcccc----hhhccccCChHHHHHHHHHH
Q 001429 189 RHD------AVPALCQRLKA--IEYLDVAEQC-LQALEKISRDQPHACLEGGAIMA----ALTYIDFFSTSIQRVALSTV 255 (1079)
Q Consensus 189 ~~G------aIp~Lv~kLl~--~~~~dl~Eqa-l~aL~nIs~d~~~~Il~~G~L~~----LL~lLd~~~~~vqr~A~~~l 255 (1079)
+.| +|..++..+-. .+..-..-.+ +-++.-|..+.. .++..+.++. +..||...+.++.+-|+..+
T Consensus 773 d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~-~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fi 851 (1176)
T KOG1248|consen 773 DDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK-NILDDETLEKLISMVCLYLASNSREIAKAAIGFI 851 (1176)
T ss_pred cccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333 33333322211 1222222222 667777766532 2333333343 44455566888999999999
Q ss_pred HHhhcCCCCCch-hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 256 ANICKKLPSECP-SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 256 sNlc~~~~~~~~-~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
.-+|...|.... .++..++|.+..+++....+++..+-..|-.++..| ..+.++.++.
T Consensus 852 kvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf--g~~eLe~~~p 910 (1176)
T KOG1248|consen 852 KVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF--GAEELESFLP 910 (1176)
T ss_pred HHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--CHHHHHhhCH
Confidence 999998876542 346678999999877778889999888888888876 5666666654
No 184
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.19 E-value=36 Score=40.84 Aligned_cols=203 Identities=16% Similarity=0.116 Sum_probs=112.2
Q ss_pred hhhHHHHHHHhcCCCchhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhc----CCC
Q 001429 88 HRGLRELQRRRSSSDHGKLRSILACLSEDT--DPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLAR----HET 161 (1079)
Q Consensus 88 ~~~l~~~~r~l~~~~~~~l~~lv~~L~s~~--d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~----~~~ 161 (1079)
+-++-.+.|.++-....++..++..+-+.. .+..++..-.+.+--+. ++.. +...|.+..++..|. ++
T Consensus 197 ~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~--~~~~---l~~~~lL~s~~~~la~ka~dp- 270 (533)
T KOG2032|consen 197 RVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELK--RPKE---LDKTGLLGSVLLSLANKATDP- 270 (533)
T ss_pred HHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHh--Cccc---ccccccHHHHHHHHHHhccCc-
Confidence 335666677777556667777777775431 12223333222222222 2222 335667776666664 33
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhHHHhCC--ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhc
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHD--AVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTY 239 (1079)
Q Consensus 162 ~~elq~~A~~aLtNIa~~~p~~~~~VV~~G--aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~l 239 (1079)
+..+.-.|||+|.|.+++.|+ .|..++ .+..++-.|....+.+++-+++.+|-.+..--...-++.+-++.-+++
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 457788999999999999775 333333 344444456666679999999999988875433333444445555554
Q ss_pred cccC---ChHHHHHHHHH---HHHhhcCCCCCch-hhhh-ccHHHHHHhhccCCHHHHHHHHHHHHHHHh
Q 001429 240 IDFF---STSIQRVALST---VANICKKLPSECP-SHLM-EAVPILSNLLQYEDRQLVESVAICLIKIAE 301 (1079)
Q Consensus 240 Ld~~---~~~vqr~A~~~---lsNlc~~~~~~~~-~~v~-~vlP~L~~LL~~~D~~V~~~A~~als~I~~ 301 (1079)
..++ ...+.-.|... ++-+|.+.-..-| +.+. ...|.+ -.|++..+. +..||....+.+.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll-lhl~d~~p~-va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL-LHLQDPNPY-VARACRSELRTCY 415 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce-eeeCCCChH-HHHHHHHHHHhcC
Confidence 4443 44444444444 3444544322222 2233 333333 234555544 4667888777663
No 185
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=75.59 E-value=15 Score=38.00 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=76.1
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc---cCCcch
Q 001429 108 SILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD---IFPRSS 184 (1079)
Q Consensus 108 ~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~---~~p~~~ 184 (1079)
++..-|+++ +++.+..++.-+.-+...+..+.+..- -..++..|+.+|+.++.+.+...|+.+|+.|+. +.|+.+
T Consensus 29 ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 29 RINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 344445666 778888888777655443322232111 235889999999998778888899999999964 667766
Q ss_pred hHHHhCCChHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCCcc
Q 001429 185 GLLVRHDAVPALCQRLKAIEY-LDVAEQCLQALEKISRDQPHA 226 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~~~~-~dl~Eqal~aL~nIs~d~~~~ 226 (1079)
+.+.- ..+|.+++-|+..-. ....+.|+.+|..+-..+|..
T Consensus 107 Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 107 REIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 66652 335666554544332 567778888888887766543
No 186
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.19 E-value=10 Score=42.86 Aligned_cols=137 Identities=21% Similarity=0.307 Sum_probs=91.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch-hHHHhCCChH----HHHHHhh-------cCCCHHHHHHHHHH
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS-GLLVRHDAVP----ALCQRLK-------AIEYLDVAEQCLQA 215 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~-~~VV~~GaIp----~Lv~kLl-------~~~~~dl~Eqal~a 215 (1079)
-++|.+..++.+. +++++..+|.||..+....+... ..+.+.|... +|...|. +.+...+.+.+.-|
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4799999999988 69999999999999998766544 2244556433 3332222 13456788888888
Q ss_pred HHHhhcc-----C-C-----cchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccC
Q 001429 216 LEKISRD-----Q-P-----HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYE 284 (1079)
Q Consensus 216 L~nIs~d-----~-~-----~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~ 284 (1079)
|-.++.- . + ..++..|.+..+....++....+....+..+..+++........+.+.++|.|.+.|...
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 8887542 1 1 136667766655444443345666667777777766655555667788899998887765
Q ss_pred C
Q 001429 285 D 285 (1079)
Q Consensus 285 D 285 (1079)
+
T Consensus 278 f 278 (282)
T PF10521_consen 278 F 278 (282)
T ss_pred C
Confidence 4
No 187
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.16 E-value=1.2e+02 Score=33.68 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=86.8
Q ss_pred HHHhhccCCcchhHHHhCCChHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCCcc----hhccCcccchhhccccC
Q 001429 173 ITYLCDIFPRSSGLLVRHDAVPALCQRLKAI-----EYLDVAEQCLQALEKISRDQPHA----CLEGGAIMAALTYIDFF 243 (1079)
Q Consensus 173 LtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~-----~~~dl~Eqal~aL~nIs~d~~~~----Il~~G~L~~LL~lLd~~ 243 (1079)
|.-.....|+....++++. ||..+-.++.. ++.-++--++-++|.+...+.+. .+..+++|-||..+++.
T Consensus 102 LlQcvASHpdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G 180 (293)
T KOG3036|consen 102 LLQCVASHPDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG 180 (293)
T ss_pred HHHHHhcCcchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc
Confidence 3333445688888888765 45544444433 34566766777777777665544 45689999999999999
Q ss_pred ChHHHHHHHHHHHHhhcCC--------CCCchhhhhccHHHHHH-hhccCCHHHHHHHHHHHHHHHhc
Q 001429 244 STSIQRVALSTVANICKKL--------PSECPSHLMEAVPILSN-LLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 244 ~~~vqr~A~~~lsNlc~~~--------~~~~~~~v~~vlP~L~~-LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
+.-.+..|+.++--+--.. ..+.|-.|..++--++. +.+.++.++++.+..|..+++++
T Consensus 181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 8888888888876553321 11234455555544433 34567899999999999999984
No 188
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.79 E-value=21 Score=45.36 Aligned_cols=187 Identities=14% Similarity=0.249 Sum_probs=114.9
Q ss_pred CchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 001429 102 DHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP 181 (1079)
Q Consensus 102 ~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p 181 (1079)
+..++++.+..+..+ .+.++-.|+++|+.++-.- ..-..+...+++..+.+.|+++ ++-+-+.|.+.++-+++..|
T Consensus 725 ~~e~~qeai~sl~d~-qvpik~~gL~~l~~l~e~r--~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDD-QVPIKGYGLQMLRHLIEKR--KKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred cHHHHHHHHHHhcCC-cccchHHHHHHHHHHHHhc--chhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHhcc
Confidence 355677777777766 6678889999999987522 3333455678999999999998 68899999999999998877
Q ss_pred cchhHHHhCCChHHHHHHhhcCCC---HHHHHHHHHHHHHhhccCCcchhc--cCcccchhhccccCChHHHHHHHHHHH
Q 001429 182 RSSGLLVRHDAVPALCQRLKAIEY---LDVAEQCLQALEKISRDQPHACLE--GGAIMAALTYIDFFSTSIQRVALSTVA 256 (1079)
Q Consensus 182 ~~~~~VV~~GaIp~Lv~kLl~~~~---~dl~Eqal~aL~nIs~d~~~~Il~--~G~L~~LL~lLd~~~~~vqr~A~~~ls 256 (1079)
+ ..+|-|.+.-.+... .|.+--.=.|+.++.+..+..+.. +-.+..++.-++.........++.+++
T Consensus 801 e--------~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 801 E--------DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLG 872 (982)
T ss_pred h--------hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Confidence 5 557777763332221 122222335666666555444433 223344555556443344555778888
Q ss_pred HhhcCCCCCchhhhhccHHHHHHhhccCCHH-HHHHHHHHHHHHH
Q 001429 257 NICKKLPSECPSHLMEAVPILSNLLQYEDRQ-LVESVAICLIKIA 300 (1079)
Q Consensus 257 Nlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~-V~~~A~~als~I~ 300 (1079)
+||.-..-.--+.+.+++-.+..+...++.- ++..|.-.|..+-
T Consensus 873 ~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 873 QLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 8887543222235566666666666554433 3344444444333
No 189
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.49 E-value=26 Score=36.25 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=69.0
Q ss_pred hHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC--CHHHHHHHHhcCCchHHHhhhhccCC-hhHHHHHHH
Q 001429 421 PDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS--KSDMLIELLKSANIPSFLAGVFTRKD-HHVLILALE 497 (1079)
Q Consensus 421 p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~--~~~~L~~ll~~~~i~s~La~iL~~~d-~~~l~~aLq 497 (1079)
++.+.+-....+..|+.+........++..|+.++.++.... .++..+++..+ .++.|+..++.--+ ......+|.
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~ 136 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATP-NLPKFIQSLLQLLQDSSCPETALD 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHH
Confidence 444444445566667777777788999999999999999875 44666777644 37777777766322 456679999
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 001429 498 IAEMILQKLSDTFLNSFV 515 (1079)
Q Consensus 498 ~~e~Ll~k~p~~~~~~f~ 515 (1079)
.+..||..+|..|+++.-
T Consensus 137 ~L~~ll~~~ptt~rp~~~ 154 (165)
T PF08167_consen 137 ALATLLPHHPTTFRPFAN 154 (165)
T ss_pred HHHHHHHHCCccccchHH
Confidence 999999999999887543
No 190
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=73.35 E-value=13 Score=40.72 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhccCC-------CchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHH-hCC
Q 001429 120 SRHITSLTELCEVLSFAME-------DSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLV-RHD 191 (1079)
Q Consensus 120 ~~ql~Al~~L~~lLs~~~~-------~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV-~~G 191 (1079)
+-|.-|+..|||+-...+| +++.. ...++..|+++|....++-.++.|.-.|.|++.+....+..|. +.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sR--lE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSR--LERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHH--HHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 5688899999997544443 33333 2467888999999888899999999999999998877665554 678
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHH
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALE 217 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~ 217 (1079)
+|..|+. +++-++|......
T Consensus 217 ~i~~Li~------FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 217 CISHLIA------FIEDAEQNAHQVA 236 (257)
T ss_pred hHHHHHH------HHHHHHHHHHHHH
Confidence 9998884 4555555554443
No 191
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=72.96 E-value=24 Score=38.79 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhcc-----CCcchhccCcccchhhc--------ccc-------CChHHHHHHHHHHHHhhcCC---
Q 001429 206 LDVAEQCLQALEKISRD-----QPHACLEGGAIMAALTY--------IDF-------FSTSIQRVALSTVANICKKL--- 262 (1079)
Q Consensus 206 ~dl~Eqal~aL~nIs~d-----~~~~Il~~G~L~~LL~l--------Ld~-------~~~~vqr~A~~~lsNlc~~~--- 262 (1079)
..++|.|+-+|.||++. .++.|. ...+..||.. -|- ...+-||-|+-+++.+|-..
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~-~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIA-RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHH-HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 45788999999999975 233321 1111112211 122 23678999999999999653
Q ss_pred ----CCCchhhhhccHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCCCHHHHHHHH-hCCchHHHHHhhcCC
Q 001429 263 ----PSECPSHLMEAVPILSNLLQY-EDRQLVESVAICLIKIAEQLSQSSQMLDEVC-SHGLINQTTHLLNLN 329 (1079)
Q Consensus 263 ----~~~~~~~v~~vlP~L~~LL~~-~D~~V~~~A~~als~I~~~~~~~~e~i~~lv-~~gll~~Lv~LL~~~ 329 (1079)
..+.|..+..++-.|+++|.. .|+-.+|-|...|.|++.+ +....-.+. ..+.|..|+.+|...
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~---~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQG---DEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcc---cHHHHHHHHHhhchHHHHHHHHHHH
Confidence 234566778899999999976 5777889999999999987 444443443 568899999998754
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.82 E-value=17 Score=46.33 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=98.5
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhh--ccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccC
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMM--ADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIF 180 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~--~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~ 180 (1079)
...++.++.++... +....-.=+..|+.+|. + -|.+.+. ...+.|.|++.|+.+ ++++|..+.++|--...-.
T Consensus 866 ~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~--~-vP~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA-PGSQKHNYLEALSHVLT--N-VPKQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HhhHHHHHHHhccC-CccchhHHHHHHHHHHh--c-CCHHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhc
Confidence 45677788888733 43444455677888775 2 2223321 125899999999999 6999999999988776654
Q ss_pred CcchhHHHhCCChHHHHHHhhcCCC---HHHHHHHHHHHHHhhccCCcch---hccCcccchhhccccCChHHHHHHHHH
Q 001429 181 PRSSGLLVRHDAVPALCQRLKAIEY---LDVAEQCLQALEKISRDQPHAC---LEGGAIMAALTYIDFFSTSIQRVALST 254 (1079)
Q Consensus 181 p~~~~~VV~~GaIp~Lv~kLl~~~~---~dl~Eqal~aL~nIs~d~~~~I---l~~G~L~~LL~lLd~~~~~vqr~A~~~ 254 (1079)
+.-...=+ .-.||.|+. |-...+ .-+++-|+++|+.|.+.-|... .+--+|.++...||...--+.+.|+.+
T Consensus 941 ~tL~t~~~-~Tlvp~lLs-ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 941 ETLQTEHL-STLVPYLLS-LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccchHHH-hHHHHHHHh-cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 43332222 236788885 544333 6789999999999999766542 345678888899988666666666653
No 193
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=72.49 E-value=23 Score=40.27 Aligned_cols=174 Identities=15% Similarity=0.210 Sum_probs=101.5
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC-cchhHHHhCC-ChHHHHHHhhcCCCHHHHHHHHHHHHHhhc---c
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP-RSSGLLVRHD-AVPALCQRLKAIEYLDVAEQCLQALEKISR---D 222 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p-~~~~~VV~~G-aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~---d 222 (1079)
..+.-|+++.+...-..+-..+|..+.|+++-.| ..+....-.| +.|+ ++-|++-.+.| |.-..-+++|-. .
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~-vq~L~erkysD--Eel~~di~~i~s~l~~ 311 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKC-VQVLLERKYSD--EELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHH-HHHHHhcCCCh--HHHHHHHHHHHHHHHh
Confidence 4566677777665334566688899999998444 3333333344 4444 43466555422 111122333321 1
Q ss_pred CCc--c-------hhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhh---ccHHHHHHhhccCCHH-HH
Q 001429 223 QPH--A-------CLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLM---EAVPILSNLLQYEDRQ-LV 289 (1079)
Q Consensus 223 ~~~--~-------Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~---~vlP~L~~LL~~~D~~-V~ 289 (1079)
+.+ . -+..|.+. -++....+-.|-- |+= ..++ .++-.|..+|++..+. .+
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~--------wSp~H~~~dFWs~-N~d--------~l~kdny~i~k~L~~~lq~n~~nt~i 374 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLE--------WSPYHHKKDFWST-NLD--------MLIKDNYEIVKVLKKYLQSNNPNTWI 374 (432)
T ss_pred hhhhhhHHHHHHHHHhhCccc--------CCCcccccCchhh-hHH--------HHhhhhHHHHHHHHHHHhcCCCCceE
Confidence 110 0 11122111 1222222223310 110 1122 3677888889987666 67
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHH
Q 001429 290 ESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKI 349 (1079)
Q Consensus 290 ~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nl 349 (1079)
.-||.=|..++.. .||....+...|+=..+++|++|+ ++.+.-.|+.++-.+
T Consensus 375 ~vAc~Di~~~Vr~---~PE~~~vl~Kyg~k~~im~L~nh~-----d~~VkfeAl~a~q~~ 426 (432)
T COG5231 375 CVACSDIFQLVRA---SPEINAVLSKYGVKEIIMNLINHD-----DDDVKFEALQALQTC 426 (432)
T ss_pred eeeHhhHHHHHHh---CchHHHHHHHhhhHHHHHHHhcCC-----CchhhHHHHHHHHHH
Confidence 8899999998887 899999999999999999999998 566767788776554
No 194
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=71.96 E-value=1.6e+02 Score=32.31 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=114.3
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhH
Q 001429 107 RSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGL 186 (1079)
Q Consensus 107 ~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~ 186 (1079)
..++..+....++..+...+..|-.+....+ ... .-++..|+.+...+ ..+.+..+.+.++.+....+..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~-----~~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN-VCV-----PPVLQTLVSLVEQG-SLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cch-----hHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCchHH--
Confidence 3455656666699999999999877654332 222 22466677777666 46777788999999988776532
Q ss_pred HHhCCChHHHHHHh--h-----cCCC---HHHHHHHHHHHHHhhccCCcchhccCcccchhhcc-ccCChHHHHHHHHHH
Q 001429 187 LVRHDAVPALCQRL--K-----AIEY---LDVAEQCLQALEKISRDQPHACLEGGAIMAALTYI-DFFSTSIQRVALSTV 255 (1079)
Q Consensus 187 VV~~GaIp~Lv~kL--l-----~~~~---~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lL-d~~~~~vqr~A~~~l 255 (1079)
+.+..++. . + ..+. .+..--..+++..||...|.. -...+..+-++| +.....++..++..+
T Consensus 74 ----~~L~~~L~-~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~--g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ----PFLQPLLL-LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH--GVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ----HHHHHHHH-HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33333332 2 0 0112 222223345788888777661 111345555666 667788899999999
Q ss_pred HHhhcCCCCCchhhhhccHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC
Q 001429 256 ANICKKLPSECPSHLMEAVPILSNLLQYE-DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 256 sNlc~~~~~~~~~~v~~vlP~L~~LL~~~-D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
+-+|... ..-+....-.|..-|..+ .+.|....|.-+..+..+ .-+.+..+. +...++..+-++..+.
T Consensus 147 ~~Lc~~~----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~-~~~~e~~~~-~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAE----VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG-AVDSEEYEE-LKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHh----hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc-cCChhhhhH-HHHHHHHHHHhhcccc
Confidence 9999431 111222333334334433 455555555444444433 223444443 3345666666666654
No 195
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.10 E-value=11 Score=46.47 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=101.5
Q ss_pred cCcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 147 DSLSPVLVKLARHE---TNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~---~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
..|-|..+++-.+. .|+++|..|--+|+-+++-+.++.. .-.|.|+.-+-.++.+.++..|+-+||.++.-.
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 35667666666552 4799999999999999987765443 357888854444788888888887777765432
Q ss_pred CcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 224 PHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 224 ~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
-..+=+ .-..|..-|..-...++|+++-++.++.-.. ...|++-++.++.+|..+|.+|.+-|-..+..++..
T Consensus 966 N~~~de--~t~yLyrrL~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 966 NTTADE--HTHYLYRRLGDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred hhhhHH--HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 111111 0112333344447789999999999986432 256789999999999999999988887777777753
No 196
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=71.03 E-value=1e+02 Score=36.43 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=110.6
Q ss_pred HHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHH---HhhccCCcchhccCcccchh--hcccc
Q 001429 168 LAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALE---KISRDQPHACLEGGAIMAAL--TYIDF 242 (1079)
Q Consensus 168 ~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~---nIs~d~~~~Il~~G~L~~LL--~lLd~ 242 (1079)
.|.+.|-.+....+.......+.|++..++++| ..+ .-.+++ +...+. -....-..... ..+.+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl-~~E-------v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRL-QYE-------VDFALEENKNEEAGS---GIPPEYKESSVDGYSISY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHH-HHH-------HHHHHhcccccCCCC---CCCCCcccccccccccCH
Confidence 477888888888888888899999999999744 322 222222 111111 00000000111 11222
Q ss_pred CChHHHHHHHHHHHHhhc-CCC-CCchh-hh--hccHHHHHHhhccCC---HHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001429 243 FSTSIQRVALSTVANICK-KLP-SECPS-HL--MEAVPILSNLLQYED---RQLVESVAICLIKIAEQLSQSSQMLDEVC 314 (1079)
Q Consensus 243 ~~~~vqr~A~~~lsNlc~-~~~-~~~~~-~v--~~vlP~L~~LL~~~D---~~V~~~A~~als~I~~~~~~~~e~i~~lv 314 (1079)
......|..+..+..++. +.. ..... .+ ...+..|..++.+.. ..|...|...++.+... .|.....|.
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---ePT~~~~l~ 148 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EPTSFSILQ 148 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CCchhHHHH
Confidence 344556666777777777 221 11111 22 246777888887764 67888888888888876 899999999
Q ss_pred hCCchHHHHHhhc-CCCCCCCCccHHHHHHHHHHHHhcCCC-------CChHHHHHHhhc
Q 001429 315 SHGLINQTTHLLN-LNSRTTLSQPIYYGLIGLLVKISSGSI-------LNIGSVLKDILS 366 (1079)
Q Consensus 315 ~~gll~~Lv~LL~-~~~~~~~~~~i~~~alr~L~nlas~s~-------~gi~~~L~~lL~ 366 (1079)
++|+++.+++-+. ..- .-+..++..+-.+|+.||=.+. .+.++.+..++.
T Consensus 149 e~Gl~~~~L~~i~~~~i--~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKGI--LPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred HcCChHHHHHHHhccCC--CCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhC
Confidence 9999999999887 321 1245555556666666665554 444555544444
No 197
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.17 E-value=47 Score=40.46 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=77.6
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcch
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 105 ~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
....+++.|..+.|+.++..++-.+.-.-.. -...++|..|...--++.|.+++..|+-||+.+|...+
T Consensus 516 ~add~I~ell~d~ds~lRy~G~fs~alAy~G--------Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--- 584 (926)
T COG5116 516 MADDYINELLYDKDSILRYNGVFSLALAYVG--------TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--- 584 (926)
T ss_pred HHHHHHHHHhcCchHHhhhccHHHHHHHHhc--------CCcchhHhhhheeecccCchHHHHHHHHheeeeEecCc---
Confidence 3445555555555666665555444211111 11345566666662233367788888888887776544
Q ss_pred hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc-hhccCcccchhhccccCChHHHHH-HHHHHHHhhcCC
Q 001429 185 GLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA-CLEGGAIMAALTYIDFFSTSIQRV-ALSTVANICKKL 262 (1079)
Q Consensus 185 ~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~-Il~~G~L~~LL~lLd~~~~~vqr~-A~~~lsNlc~~~ 262 (1079)
.+++..++-|.++-+.-++--..-+||--|.+.... +++ +|.-|-....+..|. |+-+++-+....
T Consensus 585 ------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~d------iL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 585 ------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATD------ILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred ------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHH------HHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 234444543344556677777777777766554321 111 122222234444444 555555544332
Q ss_pred CCCchhhhhccHHHHHHhhc
Q 001429 263 PSECPSHLMEAVPILSNLLQ 282 (1079)
Q Consensus 263 ~~~~~~~v~~vlP~L~~LL~ 282 (1079)
.+.-...++++...+.+++.
T Consensus 653 n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 653 NPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred CcccChhHHHHHHHHHHHHh
Confidence 22222345555555555544
No 198
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.14 E-value=42 Score=41.78 Aligned_cols=137 Identities=19% Similarity=0.191 Sum_probs=75.2
Q ss_pred CcHHHHHHhhcCC---CCHHHHHHHHHHHHHhh---ccCCcchhHHHhCCChHHHHHHhhc---CCCHHHHHHHHHHHHH
Q 001429 148 SLSPVLVKLARHE---TNPDIMLLAVRAITYLC---DIFPRSSGLLVRHDAVPALCQRLKA---IEYLDVAEQCLQALEK 218 (1079)
Q Consensus 148 g~Vp~LV~lL~~~---~~~elq~~A~~aLtNIa---~~~p~~~~~VV~~GaIp~Lv~kLl~---~~~~dl~Eqal~aL~n 218 (1079)
.++..|..|+.++ ..+.+...|.-++++++ +.........+-...+|.|.+.|.. ..+.+-+--++.||||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4566677777654 23444444444455443 2222222111222456777754432 2344445568999999
Q ss_pred hhccCCcchhccCcccchhhccc---cCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc--cCCHHHHHHHH
Q 001429 219 ISRDQPHACLEGGAIMAALTYID---FFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ--YEDRQLVESVA 293 (1079)
Q Consensus 219 Is~d~~~~Il~~G~L~~LL~lLd---~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~--~~D~~V~~~A~ 293 (1079)
+..... +..+..++. ..+..++..|+|++.++....|.. +-+.|..+.. ..+.+|+..|+
T Consensus 473 ~g~~~~--------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~ 537 (574)
T smart00638 473 AGHPSS--------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEVRMAAV 537 (574)
T ss_pred cCChhH--------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHHHHHHH
Confidence 854332 233444443 125567778999999887644322 2333444433 46788999988
Q ss_pred HHHHHH
Q 001429 294 ICLIKI 299 (1079)
Q Consensus 294 ~als~I 299 (1079)
..|..-
T Consensus 538 ~~lm~t 543 (574)
T smart00638 538 LVLMET 543 (574)
T ss_pred HHHHhc
Confidence 877653
No 199
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=68.82 E-value=60 Score=39.13 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=93.6
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLV 347 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~ 347 (1079)
.....++|.+..+|+.+=.+-+..+.-.++.+.+... ++..-+.. ..+++.|+ ...-+. ....+-+++|.|.
T Consensus 113 ~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~-~~~~p~~y--~~L~~~Ll---~p~lWe--~~gniPalvrLL~ 184 (435)
T PF03378_consen 113 QFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP-SSPLPDAY--KQLFPPLL---SPALWE--RRGNIPALVRLLQ 184 (435)
T ss_dssp HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS---S--TTT--GGGHHHHT---SGGGGG--STTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcHHH--HHHHHHHc---Ccchhc--cCCCcCcHHHHHH
Confidence 3455689999999998888889999999999988722 01110100 02223222 211111 1223345666666
Q ss_pred HHhcCCC---------CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcc
Q 001429 348 KISSGSI---------LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLV 418 (1079)
Q Consensus 348 nlas~s~---------~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~ 418 (1079)
.+.+..+ .+++..+.+|+.+...++. . + +.+..++. .+
T Consensus 185 a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~-g-----F---~LL~~iv~-------~~----------------- 231 (435)
T PF03378_consen 185 AYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY-G-----F---DLLESIVE-------NL----------------- 231 (435)
T ss_dssp HHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH-H-----H---HHHHHHHH-------HS-----------------
T ss_pred HHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH-H-----H---HHHHHHHH-------HC-----------------
Confidence 5544333 4556666666665432210 0 0 12222222 11
Q ss_pred cChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhc
Q 001429 419 DRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKS 473 (1079)
Q Consensus 419 ~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~ 473 (1079)
.++.+..|+..++-+|+.-++++-.....+..+..++-++..-.++.+.+.++.
T Consensus 232 -p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~ 285 (435)
T PF03378_consen 232 -PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDS 285 (435)
T ss_dssp --HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 134567788889999999888887777888888888877777788888888765
No 200
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=67.89 E-value=66 Score=36.07 Aligned_cols=177 Identities=18% Similarity=0.205 Sum_probs=102.9
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHh----------CCChHHHHHHhhcCC---CHHHHHHHH
Q 001429 147 DSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVR----------HDAVPALCQRLKAIE---YLDVAEQCL 213 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~----------~GaIp~Lv~kLl~~~---~~dl~Eqal 213 (1079)
.|+.+-+++-|.+... ...+...|.-++.... ..+|+ .+.+|.++..+-... ......+++
T Consensus 63 ~Glq~Ll~KGL~Ss~t---~e~tl~lL~~L~~~~~---~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A 136 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSST---YELTLRLLSRLTPLPD---DPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA 136 (262)
T ss_pred hhHHHHHhCccCCCCc---HHHHHHHHHHHhcCCC---ccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 4777777777777643 3344455555544311 12222 245677776443332 124566777
Q ss_pred HHHHHhhccCCcchhccCcccchhhcccc--C--ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHH
Q 001429 214 QALEKISRDQPHACLEGGAIMAALTYIDF--F--STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLV 289 (1079)
Q Consensus 214 ~aL~nIs~d~~~~Il~~G~L~~LL~lLd~--~--~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~ 289 (1079)
..|..+|.... .+.|..++..+.. | ..+..+.++..+.+-+- | .+..+++-.|..+|...-.-++
T Consensus 137 ~~La~~a~~~~-----~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 137 EALAQVAEAQG-----LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHHHhCC-----CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHH
Confidence 78888775432 2233334433221 2 23344444444443321 2 2335667778899988888899
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCC
Q 001429 290 ESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGS 353 (1079)
Q Consensus 290 ~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s 353 (1079)
..+...|..+....... .. ..++++.+|.++|... ....|+++|-++.+.|
T Consensus 206 ~~~L~iL~~ll~~~d~~----~~-~~~dlispllrlL~t~--------~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDMR----SP-HGADLISPLLRLLQTD--------LWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHhccccCC----CC-cchHHHHHHHHHhCCc--------cHHHHHHHHHHHHhhc
Confidence 99999888887543211 11 5567899999999754 3457888888876654
No 201
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=67.80 E-value=45 Score=37.19 Aligned_cols=193 Identities=12% Similarity=0.167 Sum_probs=108.8
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhccCCCchhh--hhccCcHHHHHH-------hhcCCC-CHHHHHHHHHHHH---H
Q 001429 109 ILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSS--MMADSLSPVLVK-------LARHET-NPDIMLLAVRAIT---Y 175 (1079)
Q Consensus 109 lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~--~~~~g~Vp~LV~-------lL~~~~-~~elq~~A~~aLt---N 175 (1079)
++..|. ++..+..|+.+|++... .-+.+.- --.-|.+..|.+ .|..+. .+..-...|.||+ -
T Consensus 2 ~i~~L~---~~~~Re~Al~eLsk~r~--~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~ 76 (262)
T PF04078_consen 2 LILDLC---NPETRENALLELSKKRE--SFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQC 76 (262)
T ss_dssp HHHHTS---SHHHHHHHHHHHHHTCC--C-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHH
T ss_pred hhHHhc---CcchHHHHHHHHHHhhh--cccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHH
Confidence 344453 56788899999988532 1122221 112244444432 122221 1222234555554 4
Q ss_pred hhccCCcchhHHHhCCChHHHHHHhhcCC-----CHHHHHHHHHHHHHhhccCCcc----hhccCcccchhhccccCChH
Q 001429 176 LCDIFPRSSGLLVRHDAVPALCQRLKAIE-----YLDVAEQCLQALEKISRDQPHA----CLEGGAIMAALTYIDFFSTS 246 (1079)
Q Consensus 176 Ia~~~p~~~~~VV~~GaIp~Lv~kLl~~~-----~~dl~Eqal~aL~nIs~d~~~~----Il~~G~L~~LL~lLd~~~~~ 246 (1079)
+|+ .|+.+..++++...--|. -.+... +.-++-.++-++|-+....... .++...+|.|+..+.+.+.-
T Consensus 77 vAs-hpetr~~Fl~a~iplyLy-PfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel 154 (262)
T PF04078_consen 77 VAS-HPETRMPFLKAHIPLYLY-PFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL 154 (262)
T ss_dssp HHH--TTTHHHHHHTTGGGGGH-HHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH
T ss_pred HHc-ChHHHHHHHHcCchhheh-hhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH
Confidence 455 689999999887532222 333332 3455566666666666644333 46789999999999987666
Q ss_pred HHHHHHHHHHH----------hhcCCCCCchhhhhccHHHHHH-hhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001429 247 IQRVALSTVAN----------ICKKLPSECPSHLMEAVPILSN-LLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVC 314 (1079)
Q Consensus 247 vqr~A~~~lsN----------lc~~~~~~~~~~v~~vlP~L~~-LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv 314 (1079)
.+..|..++-. +|.. .+.|..+..++-.++. +.....+++++..++|-.+++++ +...+++-
T Consensus 155 SKtvAtfIlqKIL~dd~GL~yiC~t--~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn----prar~aL~ 227 (262)
T PF04078_consen 155 SKTVATFILQKILLDDVGLNYICQT--AERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN----PRAREALR 227 (262)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS----TTHHHHHH
T ss_pred HHHHHHHHHHHHHcchhHHHHHhcC--HHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC----HHHHHHHH
Confidence 66667776654 4432 2335555555555544 34567899999999999999985 54445443
No 202
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.23 E-value=25 Score=47.29 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=117.4
Q ss_pred CCchhHHHHHHHhccCC---------ChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHH
Q 001429 101 SDHGKLRSILACLSEDT---------DPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVR 171 (1079)
Q Consensus 101 ~~~~~l~~lv~~L~s~~---------d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~ 171 (1079)
....+++.+++.|+..+ .+.+-......+...|.+..+ -...| ++++..++..|..+ .+.++--|.+
T Consensus 763 ~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~-f~~sf--D~yLk~Il~~l~e~-~ialRtkAlK 838 (1692)
T KOG1020|consen 763 TVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARS-FSQSF--DPYLKLILSVLGEN-AIALRTKALK 838 (1692)
T ss_pred hhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhH-HHHhh--HHHHHHHHHHhcCc-hHHHHHHHHH
Confidence 34677888888885441 112222333333344443322 11233 46888899999866 6899999999
Q ss_pred HHHHhhccCCcch-hHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhcc-CcccchhhccccCChHHHH
Q 001429 172 AITYLCDIFPRSS-GLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEG-GAIMAALTYIDFFSTSIQR 249 (1079)
Q Consensus 172 aLtNIa~~~p~~~-~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~-G~L~~LL~lLd~~~~~vqr 249 (1079)
||.+|++..|... +.-|..|+.- |+.. +.+.++|.|+.-+|...--.+..+.+. +. +..-+...++.+.+
T Consensus 839 clS~ive~Dp~vL~~~dvq~~Vh~----R~~D-ssasVREAaldLvGrfvl~~~e~~~qyY~~---i~erIlDtgvsVRK 910 (1692)
T KOG1020|consen 839 CLSMIVEADPSVLSRPDVQEAVHG----RLND-SSASVREAALDLVGRFVLSIPELIFQYYDQ---IIERILDTGVSVRK 910 (1692)
T ss_pred HHHHHHhcChHhhcCHHHHHHHHH----hhcc-chhHHHHHHHHHHhhhhhccHHHHHHHHHH---HHhhcCCCchhHHH
Confidence 9999999877521 1122333333 4433 468999999999997655555444331 11 11112234889999
Q ss_pred HHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 250 VALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 250 ~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
.++.++.-+|... ++|..+-+++--+..-.+.+...|++-+|-++..+=
T Consensus 911 RvIKIlrdic~e~--pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 911 RVIKILRDICEET--PDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHHHHHHHHHHhC--CChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 9999999999865 467766666555555556566668888888888763
No 203
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=67.22 E-value=79 Score=37.79 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=114.1
Q ss_pred hhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001429 141 LSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKIS 220 (1079)
Q Consensus 141 ~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs 220 (1079)
....+...++..|+.++.++ |+.-+......|.+|.+..+..+..+.. ...-.|.+-+-+....--...+++.|+.|.
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~-D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSP-DPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSS-THHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 34467889999999999999 6988888999999999888887776642 223333321222333333455888899888
Q ss_pred ccCCcc------------h---hccCccc-------c-hhhccc---------------c-CChHHH--HHHHHHHHHhh
Q 001429 221 RDQPHA------------C---LEGGAIM-------A-ALTYID---------------F-FSTSIQ--RVALSTVANIC 259 (1079)
Q Consensus 221 ~d~~~~------------I---l~~G~L~-------~-LL~lLd---------------~-~~~~vq--r~A~~~lsNlc 259 (1079)
.+.+.. + .....+. . +.+|+. + ..++.+ ---+.-+..++
T Consensus 204 ~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il 283 (409)
T PF01603_consen 204 NGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEIL 283 (409)
T ss_dssp TT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Confidence 874310 1 1111111 0 111111 1 112222 23455667777
Q ss_pred cCCCCCchhh-hhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhC---CchHHHHHhhcCCCCCCCC
Q 001429 260 KKLPSECPSH-LMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSH---GLINQTTHLLNLNSRTTLS 335 (1079)
Q Consensus 260 ~~~~~~~~~~-v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~---gll~~Lv~LL~~~~~~~~~ 335 (1079)
...++..+.. ...++..|..++.+....|.+.|+..+. ++ .+-.++.. .++|.+..-|.......-+
T Consensus 284 ~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~--------n~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 284 EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN--------NE-YFLSLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG--------SH-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC--------CH-HHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 7766555554 4568888888899999999988875432 22 22334333 2566666655432222225
Q ss_pred ccHHHHHHHHHHHHhcCCC
Q 001429 336 QPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 336 ~~i~~~alr~L~nlas~s~ 354 (1079)
..++..+..++..+...++
T Consensus 355 ~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp TTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHhCH
Confidence 5677777777777655544
No 204
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.48 E-value=2.5e+02 Score=38.56 Aligned_cols=124 Identities=11% Similarity=0.067 Sum_probs=81.4
Q ss_pred ccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHH
Q 001429 233 IMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDE 312 (1079)
Q Consensus 233 L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~ 312 (1079)
|.-++..|+...+.+..+|+.|++++..-.|. .-.-.++-..+..-+..+-..|++.|+-.+++-+-. .++.+..
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~---~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS---IPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc---cHHHHHH
Confidence 44445555555677777888888888765321 112234455555556666677888888888776654 4544443
Q ss_pred HHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--CChHHHHHHhhccCCCC
Q 001429 313 VCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--LNIGSVLKDILSTYDLS 371 (1079)
Q Consensus 313 lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--~gi~~~L~~lL~~~~~e 371 (1079)
.. ..+.+-+... +..+..-+|++|.-||...| .-+.+++.++|.....|
T Consensus 893 yY-----~~i~erIlDt-----gvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 893 YY-----DQIIERILDT-----GVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDE 943 (1692)
T ss_pred HH-----HHHHhhcCCC-----chhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccc
Confidence 33 3444444433 45678899999999999988 78888999999876553
No 205
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.22 E-value=59 Score=41.16 Aligned_cols=176 Identities=14% Similarity=0.061 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHH-HHhhccC---CcchhccCcccchhhcc
Q 001429 165 IMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQAL-EKISRDQ---PHACLEGGAIMAALTYI 240 (1079)
Q Consensus 165 lq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL-~nIs~d~---~~~Il~~G~L~~LL~lL 240 (1079)
+-..|..+--.++.-.+.....|+..++ ..++..........++++.-|+. +.++... ...+++.|+..+|+.+.
T Consensus 435 l~~la~~a~qev~~~~~~n~~~v~~~r~-rk~~~~~~~~~~~svakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~ 513 (748)
T KOG4151|consen 435 LFDLAAFAFQEVAALSPLNWGNVHMSRA-RKRLSLDEDPSCESVAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLG 513 (748)
T ss_pred HHHHHHHHHhhhhhccccccchHHHHHH-HHhhccCcchhhhHHHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHH
Confidence 3334555655666666666666665443 22222222333566777777765 6666332 34689999999999987
Q ss_pred ccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHH--HHHHHHHHHHHhccCCCHHHHHHHHhCCc
Q 001429 241 DFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLV--ESVAICLIKIAEQLSQSSQMLDEVCSHGL 318 (1079)
Q Consensus 241 d~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~--~~A~~als~I~~~~~~~~e~i~~lv~~gl 318 (1079)
.+........+..+++ ...+-+ ...-.++++.+.+.++. |.+-. =+++.++.|++.- +....+.++..-.
T Consensus 514 ~~q~e~akl~~~~aL~---~~i~f~-~~~~~~v~~~~~s~~~~-d~~~~en~E~L~altnLas~---s~s~r~~i~ke~~ 585 (748)
T KOG4151|consen 514 QQQFEEAKLKWYHALA---GKIDFP-GERSYEVVKPLDSALHN-DEKGLENFEALEALTNLASI---SESDRQKILKEKA 585 (748)
T ss_pred HHhchHHHHHHHHHHh---hhcCCC-CCchhhhhhhhcchhhh-hHHHHHHHHHHHHhhcccCc---chhhHHHHHHHhc
Confidence 7666666667666776 122211 23345678888777654 33332 3677778877654 5566666887766
Q ss_pred hHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 319 INQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 319 l~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
++.+-+++... .+..+..++..+.||..++.
T Consensus 586 ~~~ie~~~~ee-----~~~lqraa~e~~~NLl~~~~ 616 (748)
T KOG4151|consen 586 LGKIEELMTEE-----NPALQRAALESIINLLWSPL 616 (748)
T ss_pred chhhHHHhhcc-----cHHHHHHHHHHHHHHHhhHH
Confidence 66666666544 67788899999999977654
No 206
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.79 E-value=92 Score=32.98 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchh
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACL 228 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il 228 (1079)
.-+.|+.++-.+.++.++..|+.+|..|.++...+-...-+... + .-.+..+..+-...|..+
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~------~--~~sFtslS~tLa~~i~~l--------- 102 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKG------P--SGSFTSLSSTLASMIMEL--------- 102 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCC------C--CCCcccHHHHHHHHHHHH---------
Confidence 55566666655558999999999999999986443333222110 0 011222222111111111
Q ss_pred ccCcccchhhcccc-CChHHHHHHHHHHHHhhcCCCCCc--hhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 229 EGGAIMAALTYIDF-FSTSIQRVALSTVANICKKLPSEC--PSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 229 ~~G~L~~LL~lLd~-~~~~vqr~A~~~lsNlc~~~~~~~--~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
+ ..|+..|.. ....++...+.+++.++.+.|-.. ...+..++..+..++.+.|..|+..++.|+.-+..-
T Consensus 103 -H---~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 103 -H---RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred -H---HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 0 112222322 244566677888888888776543 345677888888889999999999999999888754
No 207
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.40 E-value=77 Score=39.94 Aligned_cols=102 Identities=18% Similarity=0.103 Sum_probs=49.8
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 104 GKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 104 ~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~ 183 (1079)
.....+++.|..+.||.++..++..+.---+.. ...++|..|...--++-|.+++..|+-+|+.++...|+.
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT--------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGT--------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc--------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 344455555544445555555443332111111 122344444444222235666666666666666665543
Q ss_pred hhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 001429 184 SGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d 222 (1079)
. |..++.|-++-+.-++--+.-|||--|.+
T Consensus 590 ~---------~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 590 L---------PSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred c---------hHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 3 33333333445566666666666665544
No 208
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.23 E-value=1e+02 Score=37.16 Aligned_cols=187 Identities=10% Similarity=0.050 Sum_probs=111.4
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 147 DSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA 226 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~ 226 (1079)
...++.++.+|+.+.... .-+|++=..|+.. ..+-++.+..+++++.....-.+=+.....++.-....
T Consensus 180 sde~~~~w~qls~~~~h~--~g~trlqr~m~~~---------~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~ 248 (533)
T KOG2032|consen 180 SDEVSRRWSQLSDNDIHR--VGLTRLQRFMACV---------QDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPK 248 (533)
T ss_pred hhcccchhhhcccCcccH--HHHHHHHHHHHhh---------CCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcc
Confidence 456677777777653222 2455555555443 23455555556666554444344455555665544333
Q ss_pred hh-ccCcccchhhcccc----CChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc-cCCHHHHHHHHHHHHHHH
Q 001429 227 CL-EGGAIMAALTYIDF----FSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ-YEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 227 Il-~~G~L~~LL~lLd~----~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~-~~D~~V~~~A~~als~I~ 300 (1079)
++ +.|.+..++..+.. .+..+.+.|+..+.|...+.|.....+....+-.++.-|. ..+.+|+-+|..||..+.
T Consensus 249 ~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 249 ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 33 56777777776653 3556778899999999999665544445555555555444 456889999999999988
Q ss_pred hccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcC
Q 001429 301 EQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSG 352 (1079)
Q Consensus 301 ~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~ 352 (1079)
... ....+...+ -.+.-++..+..+. +++....++.++|.++.-
T Consensus 329 ~~~--~~~~l~~~~-l~ialrlR~l~~se-----~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 329 EKA--SNDDLESYL-LNIALRLRTLFDSE-----DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred Hhh--hhcchhhhc-hhHHHHHHHHHHhc-----ChhhhhhHHHHHHHHHHH
Confidence 652 222222111 12344555666655 556667888888877543
No 209
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=64.20 E-value=52 Score=41.93 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=111.2
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHh-hccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhh
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALEKI-SRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHL 270 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~nI-s~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v 270 (1079)
-|.-|+. ++++....+.|++-..+-.. ..+... .+ +..|+.|. ..+.-+ .|+-++..+ ..+ +.
T Consensus 5 ~~~~l~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~-~l----~~~l~~y~--~~t~s~-~~~~il~~~---~~P----~~ 68 (668)
T PF04388_consen 5 SITELLS-LLESNDLSVLEEIKALLQELLNSDREP-WL----VNGLVDYY--LSTNSQ-RALEILVGV---QEP----HD 68 (668)
T ss_pred cHHHHHH-HhcCCchhhHHHHHHHHHHHhhccchH-HH----HHHHHHHH--hhcCcH-HHHHHHHhc---CCc----cH
Confidence 3566774 88999999999988877444 333222 22 33344432 122222 233333322 222 22
Q ss_pred hccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHh
Q 001429 271 MEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKIS 350 (1079)
Q Consensus 271 ~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nla 350 (1079)
+.++-.|-..+... .-+-.++..|+.++.. .|-.+-.|++..+++.|+.+|.... +..+++.|+-+|..|.
T Consensus 69 K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~---qp~~l~~i~~t~Lf~~LLk~L~~D~----~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP--SYRLQALTLLGHFVRS---QPPWLYKILQTPLFKSLLKCLQFDT----SITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhc---CCchHHHHhcChhHHHHHHHHhhcc----cHHHHHHHHHHHHHHh
Confidence 45667777777755 4556777778888876 7888999999999999999998653 5667778888888776
Q ss_pred cCCCCChHHHHHHhhccCCCCccchhhhhcc-------CChHHHHHHHHHhhccccc
Q 001429 351 SGSILNIGSVLKDILSTYDLSHGMSSPHMVD-------GHCNQVHEVLKLLNELLPT 400 (1079)
Q Consensus 351 s~s~~gi~~~L~~lL~~~~~e~~w~lsni~a-------g~~~qi~~vi~li~~LlP~ 400 (1079)
=.-+..+.+.|..|+.-+..-++|...+-.. ...-.++.+..++.||.|.
T Consensus 140 P~ip~~l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~ 196 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPC 196 (668)
T ss_pred ccccchhhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccc
Confidence 6655455556666655444444555432111 1112245556666777765
No 210
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.80 E-value=3.4e+02 Score=33.02 Aligned_cols=234 Identities=18% Similarity=0.170 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHH
Q 001429 120 SRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQR 199 (1079)
Q Consensus 120 ~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~k 199 (1079)
..+..|+.+|++.+..- ++..++ .++-.--.++..+...+.+..+..-|..++.+...... ..+ -.+...
T Consensus 5 ~~R~~a~~~l~~~i~~~---~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKY---PLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhC---CchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence 45678888888876532 222222 24444445565554567777777777777776443111 110 112222
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCCcc-hhccCcccchhhccccCC--hHHHHHHHHHHHHh-hcCCC--CCchhhhhcc
Q 001429 200 LKAIEYLDVAEQCLQALEKISRDQPHA-CLEGGAIMAALTYIDFFS--TSIQRVALSTVANI-CKKLP--SECPSHLMEA 273 (1079)
Q Consensus 200 Ll~~~~~dl~Eqal~aL~nIs~d~~~~-Il~~G~L~~LL~lLd~~~--~~vqr~A~~~lsNl-c~~~~--~~~~~~v~~v 273 (1079)
+......+-...-+.+|..++.++.+- -++.+..+.+..+|...- ....|.+..--+.- .++.. ..+.....+.
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 333444444556677777777665432 346666776776664210 11111111000000 00000 0022334556
Q ss_pred HHHHHHhhccC----CHHHHHHHHHHHHHHHhccCCCH------HHHHHHHhCCc-----hHHHHHhhcCCCCCCCCccH
Q 001429 274 VPILSNLLQYE----DRQLVESVAICLIKIAEQLSQSS------QMLDEVCSHGL-----INQTTHLLNLNSRTTLSQPI 338 (1079)
Q Consensus 274 lP~L~~LL~~~----D~~V~~~A~~als~I~~~~~~~~------e~i~~lv~~gl-----l~~Lv~LL~~~~~~~~~~~i 338 (1079)
+..+++++..+ |+..+...+..+..||....... ..++.|+..|. ++.++..|...-. ..+.
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~---~~~l 231 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVN---SVSL 231 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhc---cccc
Confidence 66667765533 44555555555555544321111 12444444443 3334444432100 1244
Q ss_pred HHHHHHHHHHHhcCCC-CChHHHHHHhhc
Q 001429 339 YYGLIGLLVKISSGSI-LNIGSVLKDILS 366 (1079)
Q Consensus 339 ~~~alr~L~nlas~s~-~gi~~~L~~lL~ 366 (1079)
..++.+++.||+...- ...+.+|..+|.
T Consensus 232 ~~~~w~~m~nL~~S~~g~~~i~~L~~iL~ 260 (464)
T PF11864_consen 232 CKPSWRTMRNLLKSHLGHSAIRTLCDILR 260 (464)
T ss_pred chhHHHHHHHHHcCccHHHHHHHHHHHHc
Confidence 5577888888876544 556677777774
No 211
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=62.11 E-value=23 Score=40.21 Aligned_cols=107 Identities=15% Similarity=0.060 Sum_probs=73.6
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchh---
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPS--- 268 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~--- 268 (1079)
.+..|+..-+.+.+.++++.|+.+||-.|--+.....+ .++-+++.+......++-.|+.++..+..--....+.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 34444434456788999999999999998655432221 2344555554557788889999999876532222111
Q ss_pred ------hhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 269 ------HLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 269 ------~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
....++..|...|.+.+++++.-|+-+++.+-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 12457888888899999999999999998865
No 212
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=61.00 E-value=2.8e+02 Score=33.18 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=135.0
Q ss_pred hhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhh-hccHHHHHHhhc-cCCHHHHHHHHHHHHHHHhccC
Q 001429 227 CLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHL-MEAVPILSNLLQ-YEDRQLVESVAICLIKIAEQLS 304 (1079)
Q Consensus 227 Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v-~~vlP~L~~LL~-~~D~~V~~~A~~als~I~~~~~ 304 (1079)
.+...-+..|+.+++..+..-+.....++.++-...+... ..+ ..+--.|.+.+. .....-+...+..++.|..||.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r-~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLR-SFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTH-HHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 3444555566777776666666666666666654433222 233 334445555554 3455678888999999998874
Q ss_pred C--CHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCCCccchhhhhccC
Q 001429 305 Q--SSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDLSHGMSSPHMVDG 382 (1079)
Q Consensus 305 ~--~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~e~~w~lsni~ag 382 (1079)
- .+++...+. ..|+.|..+.. -...+.+...++..++..++.-...++..+|++ |..+|
T Consensus 208 ~plk~eh~~fl~-----~vllPLh~~~~----~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~------WP~t~---- 268 (409)
T PF01603_consen 208 VPLKEEHKQFLR-----KVLLPLHKSPH----LSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKH------WPKTN---- 268 (409)
T ss_dssp SS--HHHHHHHH-----HTTGGGGGSTG----GGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHH------S-SS-----
T ss_pred CCCcHHHHHHHH-----HHHHHHhcCCc----HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHh------CCCCC----
Confidence 1 234444332 34455555441 233456888888888887776667788888887 55544
Q ss_pred ChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC
Q 001429 383 HCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS 462 (1079)
Q Consensus 383 ~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~ 462 (1079)
+..|+. .++.+.++++.+. |+.+..+...++..+..... +..+.|-.+|+...
T Consensus 269 s~Kev~-FL~el~~il~~~~------------------~~~f~~i~~~lf~~la~ci~-S~h~qVAErAl~~w------- 321 (409)
T PF01603_consen 269 SQKEVL-FLNELEEILEVLP------------------PEEFQKIMVPLFKRLAKCIS-SPHFQVAERALYFW------- 321 (409)
T ss_dssp HHHHHH-HHHHHHHHHTT--------------------HHHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHGGG-------
T ss_pred chhHHH-HHHHHHHHHHhcC------------------HHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-------
Confidence 233332 2344455554433 45567777778888888764 66898877766433
Q ss_pred CHHHHHHHHhcC---CchHHHhhhhc-cCCh---hHHHHHHHHHHHHHHhhhHHHHH
Q 001429 463 KSDMLIELLKSA---NIPSFLAGVFT-RKDH---HVLILALEIAEMILQKLSDTFLN 512 (1079)
Q Consensus 463 ~~~~L~~ll~~~---~i~s~La~iL~-~~d~---~~l~~aLq~~e~Ll~k~p~~~~~ 512 (1079)
+.+.+..++... .+.-++..+.. .+.| .+-..+.....+|++-.|+.|..
T Consensus 322 ~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 322 NNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp GSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 223333333221 22233333333 2333 34568888899999988987764
No 213
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=58.99 E-value=47 Score=33.73 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCC
Q 001429 256 ANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLS 335 (1079)
Q Consensus 256 sNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~ 335 (1079)
-.+|...... ....++++..|..-|++.++.++-.|+..+-.++.++ ......+|.+.+.+..|+.++.... .
T Consensus 22 l~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evask~Fl~eL~kl~~~~~----~ 94 (144)
T cd03568 22 LDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENC--GKRFHQEVASRDFTQELKKLINDRV----H 94 (144)
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHhcccC----C
Confidence 3456544332 2345789999999999999999999999999999874 4455567888899999999998642 5
Q ss_pred ccHHHHHHHHHHHHhcCC---C-CChHHHHHHhhcc
Q 001429 336 QPIYYGLIGLLVKISSGS---I-LNIGSVLKDILST 367 (1079)
Q Consensus 336 ~~i~~~alr~L~nlas~s---~-~gi~~~L~~lL~~ 367 (1079)
..+...++.+|..-+..= + .+.+.-++..|..
T Consensus 95 ~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~ 130 (144)
T cd03568 95 PTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKN 130 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 667777777777665432 2 5556666666653
No 214
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=58.54 E-value=50 Score=40.19 Aligned_cols=157 Identities=16% Similarity=0.196 Sum_probs=108.9
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchh-hhhccCcHHHHHHhhcCCC---CHHHHHHHHHHHHHhhc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLS-SMMADSLSPVLVKLARHET---NPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~-~~~~~g~Vp~LV~lL~~~~---~~elq~~A~~aLtNIa~ 178 (1079)
.-...++.+-+.++ +...|++|+.+|.. ++..+++. .|+...-+-.|..++.+.. +.++...+.+++..+++
T Consensus 82 ~~~a~~i~e~l~~~-~~~~~~~a~k~l~s---ls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme 157 (713)
T KOG2999|consen 82 SHYAKRIMEILTEG-NNISKMEALKELDS---LSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME 157 (713)
T ss_pred hHHHHHHHHHHhCC-CcHHHHHHHHHHhh---ccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 56778888888887 77888888888864 45566654 4888788888889888763 34666678888888888
Q ss_pred cCCcchhHHHhCCChHHHHHHhhcCC--CHHHHHHHHHHHHHhhccCC---cchhccCcccchhhccccCChHHHHHHHH
Q 001429 179 IFPRSSGLLVRHDAVPALCQRLKAIE--YLDVAEQCLQALEKISRDQP---HACLEGGAIMAALTYIDFFSTSIQRVALS 253 (1079)
Q Consensus 179 ~~p~~~~~VV~~GaIp~Lv~kLl~~~--~~dl~Eqal~aL~nIs~d~~---~~Il~~G~L~~LL~lLd~~~~~vqr~A~~ 253 (1079)
..--.+..+-+.+++ .... +.... ...+...|+..|+++.-.+. .-|.++--+..++..|.-....+|..|+.
T Consensus 158 hgvvsW~~~~~~fV~-~~a~-~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 158 HGVVSWESVSNDFVV-SMAS-YVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred hceeeeeecccHHHH-HHHH-HHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 655444333333332 2221 22222 35567889999999876654 23667777888888888777888888888
Q ss_pred HHHHhhcCCCCC
Q 001429 254 TVANICKKLPSE 265 (1079)
Q Consensus 254 ~lsNlc~~~~~~ 265 (1079)
.+--+.++.|..
T Consensus 236 l~nal~~~a~~~ 247 (713)
T KOG2999|consen 236 LLNALFRKAPDD 247 (713)
T ss_pred HHHHHHhhCChH
Confidence 888787776554
No 215
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=58.38 E-value=46 Score=41.75 Aligned_cols=131 Identities=10% Similarity=-0.034 Sum_probs=64.5
Q ss_pred ccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCH-----
Q 001429 233 IMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSS----- 307 (1079)
Q Consensus 233 L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~----- 307 (1079)
+..+.++|.+....-. .|.+.+..+......+..+.+..+++.+..--...+..+...|+.+++.++..+....
T Consensus 397 v~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 4445555555433322 3556666666555455545554444443322223456788888889999987764442
Q ss_pred -HHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccC
Q 001429 308 -QMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTY 368 (1079)
Q Consensus 308 -e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~ 368 (1079)
......+...+++.+...|..... .-+..-...+|++|||+... .+++.|..++.+.
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~LkaLgN~g~~---~~i~~l~~~i~~~ 533 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVS-RGDEEEKIVYLKALGNLGHP---ESIPVLLPYIEGK 533 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHT-G---GGHHHHHTTSTTS
T ss_pred ccccchhhHHHHHHHHHHHHHHHhh-ccCHHHHHHHHHHhhccCCc---hhhHHHHhHhhhc
Confidence 011112223567777777762100 00345566899999998321 3555555555543
No 216
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=58.20 E-value=2.4e+02 Score=32.40 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHH
Q 001429 285 DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKI 349 (1079)
Q Consensus 285 D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nl 349 (1079)
+..|+..|+.+++.|..-. ++..+...++ ..++.|+.+|.+. +..++..|=.+|+-|
T Consensus 199 ~~~l~~aAL~aW~lLlt~~--~~~~~~~~~~-~~~~~l~~lL~s~-----d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTL--PDSKLEDLLE-EALPALSELLDSD-----DVDVRIAAGEAIALL 255 (309)
T ss_pred ccHHHHHHHHHHHHHHhcC--CHHHHHHHHH-HHHHHHHHHhcCC-----CHHHHHHHHHHHHHH
Confidence 4568888888888877653 4444554443 4689999999977 667777777776655
No 217
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=57.55 E-value=5.8 Score=40.81 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCc---ch-hccCcccchh
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPH---AC-LEGGAIMAAL 237 (1079)
Q Consensus 162 ~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~---~I-l~~G~L~~LL 237 (1079)
.++++..|.-|+.-+.+..++..... +-.++.-++.....+-.-.++.+|..+=..-|. .+ ...|.++.++
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~-----~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEK-----ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 46788888888887764433333322 233333344333333344466666666443332 23 4678888888
Q ss_pred hccc--cCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc-cCCHH-HHHHHHHHHHH
Q 001429 238 TYID--FFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ-YEDRQ-LVESVAICLIK 298 (1079)
Q Consensus 238 ~lLd--~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~-~~D~~-V~~~A~~als~ 298 (1079)
.+.. ..+..+|..++.+++-.|....-.. .+....++.|..++. ++|.. |+..|+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 8887 6688999999999999997653322 345789999999995 55566 77887777654
No 218
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=57.53 E-value=1.2e+02 Score=32.21 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=89.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHH-HHHHHHhhccCCcchhc
Q 001429 151 PVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQC-LQALEKISRDQPHACLE 229 (1079)
Q Consensus 151 p~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqa-l~aL~nIs~d~~~~Il~ 229 (1079)
..+-.++..+ ..|.+..|+.++......... . .++.+-.-+-..++-++.+.. -..++.+....
T Consensus 54 ~l~~~L~~~~-~~E~~~la~~il~~~~~~~~~---~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESG-YREERYLALLILDKRRKKLTE---E-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSS-CHHHHHHHHHHHHHCGGG--H---H-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCc-hHHHHHHHHHHhHHHhhhhhH---H-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 3445566676 588888888888765532211 1 223333222244566666665 55566654332
Q ss_pred cCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHH
Q 001429 230 GGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQM 309 (1079)
Q Consensus 230 ~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~ 309 (1079)
....+.+.+.+...+.-.+|-++-++....+. .....++..+..++.+++..|+....|+|..+... +++.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~---~~~~ 189 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK---DPDE 189 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT----HHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh---CHHH
Confidence 22345566677777777888887666655544 23346777888889999999999999999999876 7777
Q ss_pred HHHHHhC
Q 001429 310 LDEVCSH 316 (1079)
Q Consensus 310 i~~lv~~ 316 (1079)
+...+..
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766644
No 219
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=56.44 E-value=1.9e+02 Score=34.16 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=24.1
Q ss_pred hhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc
Q 001429 237 LTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ 282 (1079)
Q Consensus 237 L~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~ 282 (1079)
+.+.+..+..+.|.|+.-+--+|.+ +....+.+.|++||+
T Consensus 67 ~d~~ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 67 LDLCEDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQLLN 106 (460)
T ss_pred hccccccchhhHHHHHhccchhccC------chhhhhHHHHHHHHH
Confidence 3334444666777777777777777 233445566666655
No 220
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=56.40 E-value=42 Score=35.48 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=59.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchh
Q 001429 106 LRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSG 185 (1079)
Q Consensus 106 l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~ 185 (1079)
++.|++..-+. +..+++.|+.-+.-++..+= +.+...+|.||.|..++ ++.++..|-..+..+.+-.+....
T Consensus 10 l~~Il~~~~~~-~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSS-DDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhHHHHH
Confidence 56677766666 88999999999877664321 44556799999999998 799999999999999987766544
Q ss_pred HHHhCC
Q 001429 186 LLVRHD 191 (1079)
Q Consensus 186 ~VV~~G 191 (1079)
.-+-.|
T Consensus 82 ~~~~~g 87 (187)
T PF12830_consen 82 SRYSEG 87 (187)
T ss_pred HHHHHH
Confidence 433334
No 221
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=56.07 E-value=47 Score=41.68 Aligned_cols=135 Identities=22% Similarity=0.243 Sum_probs=73.7
Q ss_pred CcHHHHHHhhcCC---CCHHHHHHHHHHHHHhhc---cCC-------cchhHHHhCCChHHHHHHhh---cCCCHHHHHH
Q 001429 148 SLSPVLVKLARHE---TNPDIMLLAVRAITYLCD---IFP-------RSSGLLVRHDAVPALCQRLK---AIEYLDVAEQ 211 (1079)
Q Consensus 148 g~Vp~LV~lL~~~---~~~elq~~A~~aLtNIa~---~~p-------~~~~~VV~~GaIp~Lv~kLl---~~~~~dl~Eq 211 (1079)
.++..|..|+..+ .++.+...|.-+++.++. ... .....+ -.-.++.|...|- ...+.+-.--
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI-IEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh-HHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 3455555666543 245565555556666643 221 111112 2345677775443 3345677778
Q ss_pred HHHHHHHhhccCCcchhccCcccchhhccccC---ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhc--cCCH
Q 001429 212 CLQALEKISRDQPHACLEGGAIMAALTYIDFF---STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQ--YEDR 286 (1079)
Q Consensus 212 al~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~---~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~--~~D~ 286 (1079)
++.||||+-.. ..++.++.++... +..++-.|+|++.++....| ..+.+.|..++. ..+.
T Consensus 510 ~LkaLgN~g~~--------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-------~~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 510 YLKALGNLGHP--------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-------EKVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHHHHT-G--------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-------HHHHHHHHHHHH-TTS-H
T ss_pred HHHHhhccCCc--------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-------HHHHHHHHHHhcCCCCCh
Confidence 99999999432 2455666666544 56677779999988743321 233455555544 3577
Q ss_pred HHHHHHHHHHHH
Q 001429 287 QLVESVAICLIK 298 (1079)
Q Consensus 287 ~V~~~A~~als~ 298 (1079)
+|+..|...|..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 888888777665
No 222
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=55.74 E-value=7.8 Score=40.44 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh-CCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHh
Q 001429 283 YEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS-HGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKIS 350 (1079)
Q Consensus 283 ~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~-~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nla 350 (1079)
..|..+...++.||..|... ..-++.+++ .+++..|+..|.+. +..+...++.+|+.+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~----~~G~~~v~~~~~~v~~i~~~L~s~-----~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNT----KYGLEAVLSHPDSVNLIALSLDSP-----NIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSS----HHHHHHHHCSSSHHHHHHHT--TT-----SHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcc----HHHHHHHHcCcHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHH
Confidence 45677888888999888753 455677775 68999999999876 6788899999999887
No 223
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=54.81 E-value=1e+02 Score=34.56 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHHHHHhhh
Q 001429 445 IFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLS 507 (1079)
Q Consensus 445 ~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p 507 (1079)
...|+.+...+..++..- .+.+..+- ..-+..++..+=.-+||+-|+.+.++...++++++
T Consensus 96 q~~R~~~~~ll~~l~~~~-~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENH-REALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 345666666666666541 12221111 11122333333346999999999999999999987
No 224
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=54.52 E-value=3.8e+02 Score=34.66 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=109.5
Q ss_pred hhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 236 ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 236 LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
++..+.......-+..+.++.+++.=.....-. ..+-++.-..-.+..-..+....+.+|.++++- +++.+..++.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~---~~~~L~~l~~ 521 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDF---DPSHLKELLS 521 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHc
Confidence 344444446666777778888877532111101 111111212222333346777888889999986 8999999985
Q ss_pred -CCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCChHHHHHHhhccCCC----Cccchhhhh----ccCChHH
Q 001429 316 -HGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNIGSVLKDILSTYDL----SHGMSSPHM----VDGHCNQ 386 (1079)
Q Consensus 316 -~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi~~~L~~lL~~~~~----e~~w~lsni----~ag~~~q 386 (1079)
.+....++.+|-++ ...++..|..+|..+.- ..|-.+++..+|.+.-. ..+|.+..+ .++|...
T Consensus 522 d~~~~~~i~s~lfsp-----~~~l~qaA~~llk~~~d--~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr 594 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSP-----DDDLYQAAQDLLKQAFD--VDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPR 594 (727)
T ss_pred CcchhhHHHhheeCC-----ChHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 58999999999887 67899999999999874 34566777777765432 123444333 1344333
Q ss_pred HHHHHHHhhcccccccCccchhhccccchhc-ccChHHHHHHHHhHHHHHHHHHhcc
Q 001429 387 VHEVLKLLNELLPTSVGDQCVQLVLDKQSFL-VDRPDLLQNFGMDILPMLIQVVNSG 442 (1079)
Q Consensus 387 i~~vi~li~~LlP~l~~~~~~~~~~~r~~~l-~~~p~~~~~f~~~llp~Li~v~~ss 442 (1079)
+..+... ++-.+++. .++. -....+. .++...+.+|=+..|-.|.-+|..|
T Consensus 595 ~vr~~~D---Ii~~Lcdp-~~Gi-Lr~~~~~~~~~~~~l~~~W~~~W~~L~~if~~t 646 (727)
T PF12726_consen 595 MVRCLMD---IIEVLCDP-VSGI-LRNRTLLKSEEAAELQRFWELQWSFLDMIFRRT 646 (727)
T ss_pred HHHHHHH---HHHHHcCC-CCCc-cccCcccccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333321 11122221 0000 0011122 3455667888888888888888765
No 225
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.48 E-value=4.2 Score=48.28 Aligned_cols=91 Identities=9% Similarity=-0.141 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccccCCcccccccccCCCccccchhhhhhhHHHhhhhHHHHhcCCCh
Q 001429 976 SPIYDILFLLKSLEGVNRLTCHLISHERIRAYAEGRFDNLDDLKVEVHSLRQNDFVNSKLTEKLEQQMRDSAAVSTGGVP 1055 (1079)
Q Consensus 976 ~~~~~iL~LLr~L~~ln~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Fvn~KLTaKL~rQLqdPLivasg~LP 1055 (1079)
.+.+.+..+++.++++|.. ++. ..+-++ .+.-...-..--.-.|-+.|+++++|+||.+-|+.--++.|
T Consensus 88 h~~~~~~~~~~~~e~~~~~-~~~--------i~l~rv--~~~~~~~~l~d~~~~~~~vp~sefiNsKLt~Kl~rql~d~l 156 (621)
T KOG0170|consen 88 HDPSVSNPLLVPLENINPS-LDV--------ILLLRV--AIEGYWYYLDDLAMCKEIVPTSEFINSKLTAKLARQLQDPL 156 (621)
T ss_pred CChhhccccccchhhcCch-HHH--------HHHHhh--cccchhhhhhhhhhhhcCCChHHHHHHHhhHHHHHHhcCcc
Confidence 3467788999999999933 221 111111 11100000112233677899999999999999999999999
Q ss_pred HHHHHhhhhCCceeehhhhccc
Q 001429 1056 SWCNQLMASCPFLFSLKQGASI 1077 (1079)
Q Consensus 1056 ~W~~~L~~~cPFLFPFetR~~~ 1077 (1079)
.||.-..-.++|..+++|+.+|
T Consensus 157 ~v~sg~lp~w~~~L~~~cpfLf 178 (621)
T KOG0170|consen 157 VVASGALPDWSLFLTRRCPFLF 178 (621)
T ss_pred eeecCCCChhhhhhhhcCCeec
Confidence 9999999999999999999887
No 226
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=54.08 E-value=65 Score=33.24 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred chhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHh-CCChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001429 140 SLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVR-HDAVPALCQRLKAIEYLDVAEQCLQALEK 218 (1079)
Q Consensus 140 ~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~-~GaIp~Lv~kLl~~~~~dl~Eqal~aL~n 218 (1079)
..+.+-..-++..|+++|+++.-..-+..++.|+.+|...... +.+-. .-.||.++. .+......+.|-.++-|+.
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~--~cv~~L~~viP~~l~-~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL--KCVPYLPQVIPIFLR-VIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc--CchhHHHHHhHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 3445556678899999999885444555788999999853221 11222 247899996 5554445999999998888
Q ss_pred hh
Q 001429 219 IS 220 (1079)
Q Consensus 219 Is 220 (1079)
|.
T Consensus 155 lv 156 (160)
T PF11865_consen 155 LV 156 (160)
T ss_pred HH
Confidence 75
No 227
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=53.80 E-value=63 Score=36.02 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC-CCHHHHHHHHHHHHHhhc
Q 001429 100 SSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE-TNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 100 ~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~-~~~elq~~A~~aLtNIa~ 178 (1079)
.|....+..|++++..+ ....|.++...|..+- ....||.|.+.|... ++|-++.+|+.||+.|++
T Consensus 183 ~g~EeaI~al~~~l~~~-SalfrhEvAfVfGQl~------------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 183 IGTEEAINALIDGLADD-SALFRHEVAFVFGQLQ------------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred cCcHHHHHHHHHhcccc-hHHHHHHHHHHHhhcc------------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 45566777788888766 6677778777776642 223688899888765 357778899999999986
Q ss_pred cCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 179 IFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 179 ~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
. .+++.|. +.+.-+..-++|-|.-+|..+-..+
T Consensus 250 e-----------~~~~vL~-e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 250 E-----------DCVEVLK-EYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred H-----------HHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 2 3566777 4777778889999999998876544
No 228
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.67 E-value=1.4e+02 Score=33.23 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=78.4
Q ss_pred cCcHHHHHHhhcCCC--------CHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001429 147 DSLSPVLVKLARHET--------NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEK 218 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~--------~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~n 218 (1079)
..++|.|..+|.... +.+... =.|+++-+++-. +.-|.|+|+ +|+..+.. .+..
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~-~~~a~~LLaq~r--------e~~A~~~li-~l~~~~~~--------~~~~ 91 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNL-HFYALYLLAQFR--------EERALPPLI-RLFSQDDD--------FLED 91 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHH-HHHHHHHHHHHh--------hhhhHHHHH-HHHcCCcc--------hHHH
Confidence 346788888887521 011111 135555555421 235889999 58765532 2333
Q ss_pred hhccC-----Cc--chhccCcccchhhccccCC--hHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHH
Q 001429 219 ISRDQ-----PH--ACLEGGAIMAALTYIDFFS--TSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLV 289 (1079)
Q Consensus 219 Is~d~-----~~--~Il~~G~L~~LL~lLd~~~--~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~ 289 (1079)
+.+|- +. +.+-.|-+..+..++.... .-+...|+.++.-+....+...-.+++=+-..|...+..++..+.
T Consensus 92 l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~ 171 (249)
T PF06685_consen 92 LFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLW 171 (249)
T ss_pred HHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHH
Confidence 33332 11 1234667888888887653 346667888888888776655423333333333333555544422
Q ss_pred HHHHHHHHHHHhccC-CCHHHHHHHHhCCchHH
Q 001429 290 ESVAICLIKIAEQLS-QSSQMLDEVCSHGLINQ 321 (1079)
Q Consensus 290 ~~A~~als~I~~~~~-~~~e~i~~lv~~gll~~ 321 (1079)
.. -++.+++=.. .--..+..+++.|+|+.
T Consensus 172 ~~---Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 172 GS---LVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HH---HHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 22 2244444310 01123455556666643
No 229
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.76 E-value=5.1e+02 Score=31.26 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=104.7
Q ss_pred hhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc--C-------CcchhHHHhCCChHHHHHHhhcCC-----CHH
Q 001429 142 SSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI--F-------PRSSGLLVRHDAVPALCQRLKAIE-----YLD 207 (1079)
Q Consensus 142 ~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~--~-------p~~~~~VV~~GaIp~Lv~kLl~~~-----~~d 207 (1079)
..++.-..|+.|++||.++ |.+|-....--|--+.+. . ..-+.+.|+.++|+.|++.+-.-+ ..+
T Consensus 119 p~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~ 197 (536)
T KOG2734|consen 119 PILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEAD 197 (536)
T ss_pred HHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhh
Confidence 4577889999999999998 688876666555555432 1 134567788889998887442221 123
Q ss_pred HHHHHHHHHHHhhccCC---cchhccCcccchhhccc-c--CChHHHHHHHHHHHHhhcCCCCCchhhh--hccHHHHHH
Q 001429 208 VAEQCLQALEKISRDQP---HACLEGGAIMAALTYID-F--FSTSIQRVALSTVANICKKLPSECPSHL--MEAVPILSN 279 (1079)
Q Consensus 208 l~Eqal~aL~nIs~d~~---~~Il~~G~L~~LL~lLd-~--~~~~vqr~A~~~lsNlc~~~~~~~~~~v--~~vlP~L~~ 279 (1079)
=...++..++|+..-.+ ..+++.|-+.-||.-+. . |+.+ ...|.-+++=+-.+..... ... -+.+-.|..
T Consensus 198 gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN-k~YasEiLaillq~s~e~~-~~~~~l~GiD~lL~ 275 (536)
T KOG2734|consen 198 GVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDAN-KQYASEILAILLQNSDENR-KLLGPLDGIDVLLR 275 (536)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchh-HHHHHHHHHHHhccCchhh-hhhcCcccHHHHHh
Confidence 34556777777775443 34556655554444221 1 1222 1233344443332221110 000 111111111
Q ss_pred hh----cc-----CCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHh
Q 001429 280 LL----QY-----EDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKIS 350 (1079)
Q Consensus 280 LL----~~-----~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nla 350 (1079)
-| .+ +..+..++-..||+.... .++..+.+++.+.+.-..-++... ......++++|-.+.
T Consensus 276 ~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm----~~~nr~~Fl~~EGlqLm~Lmlr~K------k~sr~SalkvLd~am 345 (536)
T KOG2734|consen 276 QLAVYKRHDPATVDEEEMMENLFDCLCSLLM----APANRERFLKGEGLQLMNLMLREK------KVSRGSALKVLDHAM 345 (536)
T ss_pred hcchhhccCCCCcCHHHHHHHHHHHHHHHhc----ChhhhhhhhccccHHHHHHHHHHH------HHhhhhHHHHHHHHH
Confidence 11 11 134556666666655543 356666666665553333333322 122345788888888
Q ss_pred cCCC
Q 001429 351 SGSI 354 (1079)
Q Consensus 351 s~s~ 354 (1079)
.|.+
T Consensus 346 ~g~~ 349 (536)
T KOG2734|consen 346 FGPE 349 (536)
T ss_pred hCCC
Confidence 8776
No 230
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.63 E-value=67 Score=40.44 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=86.3
Q ss_pred HHhhcCCCCHHHHHHH--HHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccC
Q 001429 154 VKLARHETNPDIMLLA--VRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGG 231 (1079)
Q Consensus 154 V~lL~~~~~~elq~~A--~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G 231 (1079)
-+++.+. +|-++..- ..+|.+...++ .++|..|+.-=.+-.+.|++..|+-+||.|+-+.|..+.
T Consensus 525 ~el~~dk-dpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~--- 591 (929)
T KOG2062|consen 525 KELLRDK-DPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP--- 591 (929)
T ss_pred HHHhcCC-chhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhhch---
Confidence 3344444 46555532 34444544443 356776664113345799999999999999988876553
Q ss_pred cccchhhccc-cCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 232 AIMAALTYID-FFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 232 ~L~~LL~lLd-~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
..+++|. ++..++.--|.-++.=+|.|.-. +.++..|-.+......-|+.-||.+++.|...
T Consensus 592 ---s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 592 ---STVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred ---HHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 3666664 46888888899999999998643 34455666666666677999999999998765
No 231
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=51.12 E-value=63 Score=38.09 Aligned_cols=122 Identities=18% Similarity=0.270 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhc------CCCHHHHHHHHHHHHHhhccCCcchhccCc--ccch
Q 001429 165 IMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKA------IEYLDVAEQCLQALEKISRDQPHACLEGGA--IMAA 236 (1079)
Q Consensus 165 lq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~------~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~--L~~L 236 (1079)
-+..|+-.|..++....+.+..+ +-..++.++. ..+-.-.+.|+..++-|+...... +.|+ +..+
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i-----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~--~~Gvt~~~~~ 299 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSI-----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT--KSGVTQTNEL 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B--TTB-S-B-TT
T ss_pred cHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc--cCCccccccc
Confidence 34467777888876544433322 2333334443 234567888999999998764211 1111 1222
Q ss_pred hhccccC--------------ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHH
Q 001429 237 LTYIDFF--------------STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICL 296 (1079)
Q Consensus 237 L~lLd~~--------------~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~al 296 (1079)
+++.+|+ .+-++..|+|.+.-.-...+ -+...+++|.|++.|.+++.-|...|+.||
T Consensus 300 v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3332222 12255678898887755543 256788999999999999999999998876
No 232
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=51.04 E-value=77 Score=32.07 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=66.8
Q ss_pred hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHH
Q 001429 269 HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVK 348 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~n 348 (1079)
.-++++-.|..-|.+.++.++-.|+..+-.++.++ .......+.+.+++..|+.++.... .+.+...++.+|-.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~fl~~l~~l~~~~~----~~~Vk~kil~li~~ 111 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC--GTHFHDEVASREFMDELKDLIKTTK----NEEVRQKILELIQA 111 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHHcccC----CHHHHHHHHHHHHH
Confidence 35788999999999999999999999998888774 3445566778899999999997532 55666677777666
Q ss_pred HhcC---CC-CChHHHHHHhhc
Q 001429 349 ISSG---SI-LNIGSVLKDILS 366 (1079)
Q Consensus 349 las~---s~-~gi~~~L~~lL~ 366 (1079)
-+.. .+ .+.+.-++..|.
T Consensus 112 W~~~f~~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 112 WALAFRNKPQLKYVVDTYQILK 133 (142)
T ss_pred HHHHhCCCcccHHHHHHHHHHH
Confidence 5433 22 445555555554
No 233
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.03 E-value=94 Score=38.89 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=87.6
Q ss_pred chhHHHHHHHhccC----CChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 001429 103 HGKLRSILACLSED----TDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~----~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~ 178 (1079)
-+++..+|+.+-++ .|+.+|..|.-.|.++.+.+++-. ..-+|.|+..|....+|.++..|+-.|+-++-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhhCCCcceeccceeeccccce
Confidence 56778888877554 699999999999999887776433 23478999999844479999999888887764
Q ss_pred cCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChH
Q 001429 179 IFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTS 246 (1079)
Q Consensus 179 ~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~ 246 (1079)
-....++. .-..|..+|. -.+.+++..|+.++.++.--+.-.| .|-++.+..+|+..+..
T Consensus 964 cfN~~~de-----~t~yLyrrL~-De~~~V~rtclmti~fLilagq~KV--KGqlg~ma~~L~deda~ 1023 (1128)
T COG5098 964 CFNTTADE-----HTHYLYRRLG-DEDADVRRTCLMTIHFLILAGQLKV--KGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred ehhhhhHH-----HHHHHHHHhc-chhhHHHHHHHHHHHHHHHccceee--ccchhhhHhhccCCcch
Confidence 33322221 1234554444 4678999999999999865332112 45555555666654433
No 234
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.20 E-value=46 Score=40.52 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCChHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhcccc-CChHHHHHHHHHHHHhhcCCCCCch
Q 001429 190 HDAVPALCQRL-KAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDF-FSTSIQRVALSTVANICKKLPSECP 267 (1079)
Q Consensus 190 ~GaIp~Lv~kL-l~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~-~~~~vqr~A~~~lsNlc~~~~~~~~ 267 (1079)
.|+|..|+. . .+-.+.|+++.|+-|||.+|-+.+..++ ..+++|.. ...++..-...++.-.|.|....
T Consensus 550 ~~vv~~lLh-~avsD~nDDVrRAAViAlGfvc~~D~~~lv------~tvelLs~shN~hVR~g~AvaLGiacag~G~~-- 620 (926)
T COG5116 550 LGVVSTLLH-YAVSDGNDDVRRAAVIALGFVCCDDRDLLV------GTVELLSESHNFHVRAGVAVALGIACAGTGDK-- 620 (926)
T ss_pred chhHhhhhe-eecccCchHHHHHHHHheeeeEecCcchhh------HHHHHhhhccchhhhhhhHHHhhhhhcCCccH--
Confidence 366776663 3 3445799999999999999988766543 35565543 46666666667777888885332
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
-++..|-.|......-|+..||-+++.|... ++++.--.+ .++++++.+++...
T Consensus 621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q--~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 621 ----VATDILEALMYDTNDFVRQSAMIAVGMILMQ--CNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--cCcccChhH--HHHHHHHHHHHhhh
Confidence 2355666667777788999999999999876 344321111 25666777766543
No 235
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=50.14 E-value=60 Score=36.67 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=48.4
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch---hccCcccchhhccccCChHHHHHHHHHHHHhhcCCCC----
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC---LEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPS---- 264 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I---l~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~---- 264 (1079)
.+|+++ .|++-....++.+++.+|..+....+... ++.-|+..+ .. -++.++|...|+
T Consensus 120 iiP~iL-~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v-----------~~---~al~~~L~~LP~~tp~ 184 (282)
T PF10521_consen 120 IIPPIL-NLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV-----------FE---DALFPCLYYLPPITPE 184 (282)
T ss_pred HHhhHH-HHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH-----------HH---HHHHHHhhcCCCCCCc
Confidence 688888 48877788888888888888877665554 433333322 22 345567766543
Q ss_pred -CchhhhhccHHHHHHhhc
Q 001429 265 -ECPSHLMEAVPILSNLLQ 282 (1079)
Q Consensus 265 -~~~~~v~~vlP~L~~LL~ 282 (1079)
+....+..+.|+|..|+.
T Consensus 185 ~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 185 DESLELLQAAYPALLSLLK 203 (282)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 234456677777777754
No 236
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=49.44 E-value=1e+02 Score=39.12 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=107.1
Q ss_pred CcHHHHHHhhcCCCCHHH-HHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC---
Q 001429 148 SLSPVLVKLARHETNPDI-MLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ--- 223 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~el-q~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~--- 223 (1079)
..++.+...+.... .-+ .+++.-+|||+++.+....+.++..-+++-+= -++.-++.-++..++..+-|+.-..
T Consensus 541 ~v~~~~~s~~~~d~-~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie-~~~~ee~~~lqraa~e~~~NLl~~~~~~ 618 (748)
T KOG4151|consen 541 EVVKPLDSALHNDE-KGLENFEALEALTNLASISESDRQKILKEKALGKIE-ELMTEENPALQRAALESIINLLWSPLLY 618 (748)
T ss_pred hhhhhhcchhhhhH-HHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhH-HHhhcccHHHHHHHHHHHHHHHhhHHHH
Confidence 34555555554432 222 45899999999999988888888877777644 3555567888888899999987542
Q ss_pred Ccchhc-cCcccchhhccccCChHHHHH-------HHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHH
Q 001429 224 PHACLE-GGAIMAALTYIDFFSTSIQRV-------ALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAIC 295 (1079)
Q Consensus 224 ~~~Il~-~G~L~~LL~lLd~~~~~vqr~-------A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~a 295 (1079)
...+.+ ..+++-...+++.-....... ....+-|+|.+ ...+......+..++.+.+..++--...+
T Consensus 619 e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~-----~~~~~~~~e~~~~~i~~~~~~~qhrgl~~ 693 (748)
T KOG4151|consen 619 ERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR-----ILELLEWLEILVRAIQDEDDEIQHRGLVI 693 (748)
T ss_pred HHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh-----HHHhhcchHHHHHhhcCchhhhhhhhhhh
Confidence 223444 445554444444311111111 22333466654 23345567788889999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHhCCchHHHHH
Q 001429 296 LIKIAEQLSQSSQMLDEVCSHGLINQTTH 324 (1079)
Q Consensus 296 ls~I~~~~~~~~e~i~~lv~~gll~~Lv~ 324 (1079)
+.++... ..+..+.++....++-+..
T Consensus 694 ~ln~~~~---~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 694 ILNLFEA---LFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhhHHHH---HHHHHHHhccchHHHHHHH
Confidence 9887665 5677777777665554444
No 237
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.54 E-value=4e+02 Score=29.95 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=97.1
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchh------hhhccCcHHHHHHhhcCCC---CHHHHHHHHHHH
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLS------SMMADSLSPVLVKLARHET---NPDIMLLAVRAI 173 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~------~~~~~g~Vp~LV~lL~~~~---~~elq~~A~~aL 173 (1079)
.|.-.-++.+|++.. ..-.++.-|.++....+.+-++ .+..-+.+|.++.-+..+. ....-..+|..|
T Consensus 63 ~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred hhHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 444445666777762 2223445555554443332221 1334467788888777763 013334677888
Q ss_pred HHhhccCCcchhHHHhCCChHHHHHHhhcCCC---HHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHH
Q 001429 174 TYLCDIFPRSSGLLVRHDAVPALCQRLKAIEY---LDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRV 250 (1079)
Q Consensus 174 tNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~---~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~ 250 (1079)
..+|+.... +.+-.+........+ .|...|++..|..-- .|.. ....+.-++.+|.+....+|+.
T Consensus 140 a~~a~~~~~--------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~--~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 140 AQVAEAQGL--------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH--EFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHHhCCC--------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh--HHHHHHHHHHHHhCCcHHHHHH
Confidence 888854221 223333333333334 555566555554321 1322 2334566888888888899999
Q ss_pred HHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCC
Q 001429 251 ALSTVANICKKLPSECPSHLMEAVPILSNLLQYED 285 (1079)
Q Consensus 251 A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D 285 (1079)
++.++..+....+... ....+++-+|.++|+.+-
T Consensus 208 ~L~iL~~ll~~~d~~~-~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRS-PHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHhccccCCC-CcchHHHHHHHHHhCCcc
Confidence 9999999988765543 366788888888887653
No 238
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=47.29 E-value=3.7e+02 Score=31.08 Aligned_cols=179 Identities=13% Similarity=0.118 Sum_probs=91.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhc-cCCcchhHHHhCC--ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcc
Q 001429 150 SPVLVKLARHETNPDIMLLAVRAITYLCD-IFPRSSGLLVRHD--AVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHA 226 (1079)
Q Consensus 150 Vp~LV~lL~~~~~~elq~~A~~aLtNIa~-~~p~~~~~VV~~G--aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~ 226 (1079)
++.+.+.|++.. +.++..|.+-|+.|+. .....+..|++.= -.+.|- +|+.....+..... -..+.. .
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~-kll~~~~~~~~~~~------~~~~~~-~ 128 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLP-KLLTPRKKEKEKDS------ESSKSK-P 128 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHH-HHhccccccccccc------cccccC-c
Confidence 777888888884 8888899999999998 7667666666421 233444 34433211110000 000000 1
Q ss_pred hhccCcccchhhccccCChHHHHHHHH---HHHHhhcCCCCCchhhhhccHHHHHHh-hccCCHHHHHHHHHHHHHHHhc
Q 001429 227 CLEGGAIMAALTYIDFFSTSIQRVALS---TVANICKKLPSECPSHLMEAVPILSNL-LQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 227 Il~~G~L~~LL~lLd~~~~~vqr~A~~---~lsNlc~~~~~~~~~~v~~vlP~L~~L-L~~~D~~V~~~A~~als~I~~~ 302 (1079)
-++...|.-++.+|...+..+.+..+. .++++.++...++.+.|..++..|..- |... .
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~--~--------------- 191 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS--S--------------- 191 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC--C---------------
Confidence 334444555555555554444444331 255555555555445555555555432 2211 1
Q ss_pred cCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCCCCh
Q 001429 303 LSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSILNI 357 (1079)
Q Consensus 303 ~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~~gi 357 (1079)
+ +...--.+++...+.+|..|....++ .-...+...+-..|-.+|+....|+
T Consensus 192 v--~r~~K~~~fn~~~L~~l~~Ly~~~~~-~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 192 V--SRSTKCKLFNEWTLSQLASLYSRDGE-DEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred C--ChhhhhhhcCHHHHHHHHHHhcccCC-cccchHHHHHHHHHHHHhcCCCccc
Confidence 1 12222335666677788886665422 1122445556666777766444443
No 239
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.35 E-value=1.7e+02 Score=37.49 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=57.4
Q ss_pred hhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccC--CCHHHHHHHHhCC------chHHHHHhhcCCCCCCCCccH
Q 001429 267 PSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLS--QSSQMLDEVCSHG------LINQTTHLLNLNSRTTLSQPI 338 (1079)
Q Consensus 267 ~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~--~~~e~i~~lv~~g------ll~~Lv~LL~~~~~~~~~~~i 338 (1079)
...+.++-..+..++...-.. |.+..+++-|- ++...++.++... ++..|-+.+. .+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~-------~~~~ 84 (668)
T PF04388_consen 18 LSVLEEIKALLQELLNSDREP------WLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFV-------KPSY 84 (668)
T ss_pred hhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHc-------Cchh
Confidence 344444455555555443221 55555555431 1333344444322 3334444444 3456
Q ss_pred HHHHHHHHHHHhcCCC--------CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCc
Q 001429 339 YYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGD 404 (1079)
Q Consensus 339 ~~~alr~L~nlas~s~--------~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~ 404 (1079)
...+|.+|+.+++..+ ..+.+.|.++|..... .+ -+...+..+.-|||.++..
T Consensus 85 Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~---~~----------~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 85 RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTS---IT----------VVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhccc---HH----------HHHHHHHHHHHHhccccch
Confidence 6799999999999877 4455555555543221 11 1223333446678888764
No 240
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=74 Score=37.84 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=37.7
Q ss_pred ccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 001429 178 DIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 178 ~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d 222 (1079)
...|+-....|+.++|+.|++ ||.+++.|++-..+.-|--+..+
T Consensus 112 At~PdLYp~lveln~V~slL~-LLgHeNtDI~iavvdLLqELTD~ 155 (536)
T KOG2734|consen 112 ATMPDLYPILVELNAVQSLLE-LLGHENTDIAIAVVDLLQELTDE 155 (536)
T ss_pred hcChHHHHHHHHhccHHHHHH-HhcCCCchhHHHHHHHHHHhhhh
Confidence 356888888999999999996 99999999998888888877654
No 241
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=45.75 E-value=56 Score=37.15 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=53.3
Q ss_pred hccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 001429 145 MADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP 224 (1079)
Q Consensus 145 ~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~ 224 (1079)
....+|..+++-|... +.+.+..|++||.||+.|.-..+. ...+|.-|+-.|..
T Consensus 57 ~~~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~---------------------s~~~ql~~i~~N~~---- 110 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETA---------------------SEEEQLQWIRRNVF---- 110 (293)
T ss_pred hHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccC---------------------CHHHHHHHHHHHHH----
Confidence 3557888999999987 688999999999999998765443 34556666666653
Q ss_pred cchhccCcccchhhcccc
Q 001429 225 HACLEGGAIMAALTYIDF 242 (1079)
Q Consensus 225 ~~Il~~G~L~~LL~lLd~ 242 (1079)
.+.+.|+++++..+|..
T Consensus 111 -lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 111 -LLYECGGFPALWELLKM 127 (293)
T ss_pred -HHHHhhhhHHHHHHHHH
Confidence 36678888888887753
No 242
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=45.47 E-value=22 Score=40.42 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=65.3
Q ss_pred chhhhhcc--CcHHHHHHhhcCCCCHH-HHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHH
Q 001429 140 SLSSMMAD--SLSPVLVKLARHETNPD-IMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQAL 216 (1079)
Q Consensus 140 ~~~~~~~~--g~Vp~LV~lL~~~~~~e-lq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL 216 (1079)
+++.+..+ .++..|.++|+.. ++. .-..||-=|+.+....|+....+...|+=..+++ |+.+++.++.=.|+.|+
T Consensus 346 N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~-L~nh~d~~VkfeAl~a~ 423 (432)
T COG5231 346 NLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMN-LINHDDDDVKFEALQAL 423 (432)
T ss_pred hHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHH-HhcCCCchhhHHHHHHH
Confidence 34444444 3788999999987 455 4457999999999999999999999999999996 99999999999999998
Q ss_pred HHhhc
Q 001429 217 EKISR 221 (1079)
Q Consensus 217 ~nIs~ 221 (1079)
--+.+
T Consensus 424 q~~i~ 428 (432)
T COG5231 424 QTCIS 428 (432)
T ss_pred HHHHh
Confidence 76643
No 243
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=45.07 E-value=31 Score=35.46 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=72.5
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhc--CCCCHHHHHHHHHHHHHhhccC
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLAR--HETNPDIMLLAVRAITYLCDIF 180 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~--~~~~~elq~~A~~aLtNIa~~~ 180 (1079)
...+.+++..+-...+.+....+...+..++-+-.+-....|..+|+.+.++.++. ++ +..+|..++.+|..-+. .
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~-d 118 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACI-D 118 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHc-c
Confidence 55666777766544344566677777777654322222234778899999999998 54 68888888888876654 3
Q ss_pred CcchhHHHhCCChHHHHHHhhc-CCCHH-HHHHHHHHHHHh
Q 001429 181 PRSSGLLVRHDAVPALCQRLKA-IEYLD-VAEQCLQALEKI 219 (1079)
Q Consensus 181 p~~~~~VV~~GaIp~Lv~kLl~-~~~~d-l~Eqal~aL~nI 219 (1079)
..++..|. ..+++.|-+ +.. .++.. ++..|+-+|.+|
T Consensus 119 ~~~r~~I~-~~~~~~L~~-~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 119 KSCRTFIS-KNYVSWLKE-LYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHCCH-HHCHHHHHH-HTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHHHHHHH-HHccccchHHHHHHHHHHHhcC
Confidence 44555555 456788874 774 44444 677777777654
No 244
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.28 E-value=6e+02 Score=32.86 Aligned_cols=276 Identities=16% Similarity=0.194 Sum_probs=129.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHh--CCChHHHHHHhh-cCCCHHHHHHHHHHHHHhhccCCcchh
Q 001429 152 VLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVR--HDAVPALCQRLK-AIEYLDVAEQCLQALEKISRDQPHACL 228 (1079)
Q Consensus 152 ~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~--~GaIp~Lv~kLl-~~~~~dl~Eqal~aL~nIs~d~~~~Il 228 (1079)
+++++|+..+|.-+.+.|++++.-+.++-.=..+.... .+.--.+. +|+ .-+.-|-+-+.+.+|+-+...-.. .+
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf-kll~~~~e~Dtk~~VL~~ls~lI~r~~e-~I 607 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF-KLLKAVEECDTKTSVLNLLSTLIERVSE-HI 607 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHH-hh
Confidence 45555555544555666666666666543222222210 11111112 232 223345555666666665433211 11
Q ss_pred ccCcccchhhcccc-----CChHHHHHH-HHHHHHhhcCCCCCchhhhhccHHHHHHh--hccCC-HHHHHHHHHHHHHH
Q 001429 229 EGGAIMAALTYIDF-----FSTSIQRVA-LSTVANICKKLPSECPSHLMEAVPILSNL--LQYED-RQLVESVAICLIKI 299 (1079)
Q Consensus 229 ~~G~L~~LL~lLd~-----~~~~vqr~A-~~~lsNlc~~~~~~~~~~v~~vlP~L~~L--L~~~D-~~V~~~A~~als~I 299 (1079)
+ .-...+++||.. .+..+.|.| +.++-|+.++...+.+..-.=.+|.+--. .++++ ....+++.-...-.
T Consensus 608 ~-P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~ 686 (978)
T KOG1993|consen 608 A-PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTT 686 (978)
T ss_pred h-HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHH
Confidence 1 112224444421 244566664 46677888776544432221122322222 22222 23456654333333
Q ss_pred HhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHH-HHhcCCC-------CChHHHHHHhhccCCCC
Q 001429 300 AEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLV-KISSGSI-------LNIGSVLKDILSTYDLS 371 (1079)
Q Consensus 300 ~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~-nlas~s~-------~gi~~~L~~lL~~~~~e 371 (1079)
... .+.....++ +++|.+..++.-.++ +.-.++.++. .+.-.++ .|+...+..+|...+
T Consensus 687 L~n---~~~l~p~ll--~L~p~l~~~iE~ste------~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr-- 753 (978)
T KOG1993|consen 687 LMN---SQKLTPELL--LLFPHLLYIIEQSTE------NLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVR-- 753 (978)
T ss_pred Hhc---ccccCHHHH--HHHHHHHHHHHhhhh------hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 333 233333333 567888887764421 1112333322 1111111 455555555554432
Q ss_pred ccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHH-hccCcHHHHHH
Q 001429 372 HGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVV-NSGANIFVCYG 450 (1079)
Q Consensus 372 ~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~-~ss~~~~VR~~ 450 (1079)
.+-++++++.++.|+ +.+|-.-..+...++|-+++.. .+..-+.+...
T Consensus 754 ------------~egl~avLkiveili-------------------~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~ 802 (978)
T KOG1993|consen 754 ------------NEGLQAVLKIVEILI-------------------KTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGE 802 (978)
T ss_pred ------------HHHHHHHHHHHHHHH-------------------hhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHH
Confidence 344555655444332 2233222333456777766554 33456888888
Q ss_pred HHHHHHHhhccCCHHHHHHHHhcCC
Q 001429 451 CLSVINKLVYLSKSDMLIELLKSAN 475 (1079)
Q Consensus 451 ~l~ai~~iv~~~~~~~L~~ll~~~~ 475 (1079)
-+.++.|+..- +++.+-.++...+
T Consensus 803 yl~vvaRi~l~-n~~~~msvlqt~~ 826 (978)
T KOG1993|consen 803 YLLVVARISLR-NPSLFMSVLQTKN 826 (978)
T ss_pred HHHHHHHHHhc-ChHHHHHHHHhhh
Confidence 88899988764 7777777775543
No 245
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=43.79 E-value=53 Score=41.11 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=97.7
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.-.+..++..+--.+...--+..+-.+.+.+... + .+.+++|.|+++++.. +..++..=..=+-+..+..+.
T Consensus 292 ~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~--e-----yq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~~Lt~ 363 (690)
T KOG1243|consen 292 SKVLPILLAALEFGDAASDFLTPLFKLGKDLDEE--E-----YQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYIDHLTK 363 (690)
T ss_pred HHHHHHHHHHhhccccchhhhhHHHHhhhhcccc--c-----cccchhhhHHHHhcCc-chHHHHHHHHhHHHHhhhcCH
Confidence 3455566666654422344455555555555422 2 2456778888888877 466666555555555555554
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc-CCc------------------------------------
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD-QPH------------------------------------ 225 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d-~~~------------------------------------ 225 (1079)
+ +++.-+.|.+.. .+...+.-|+||.+.++.-|+.- +..
T Consensus 364 ~---~~~d~I~phv~~-G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 364 Q---ILNDQIFPHVAL-GFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred H---hhcchhHHHHHh-hcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 3 355566777774 55556677777777777666532 100
Q ss_pred -chhccCcccc-hhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHH
Q 001429 226 -ACLEGGAIMA-ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLI 297 (1079)
Q Consensus 226 -~Il~~G~L~~-LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als 297 (1079)
++.+.+++.. ...-+..+-......++|++.-.|... +...+...++|.|+.++-..+..|+..|--++.
T Consensus 440 ~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 440 AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF--DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred chhhhccccchhhhhhhcCCCCCchhhhhHHHhhccccc--chhhhhhhccccccccccCcccchhhHHHHHHH
Confidence 0112222221 111122222233444555555544432 222344568888888888888777776655443
No 246
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=42.64 E-value=3.5e+02 Score=38.50 Aligned_cols=201 Identities=14% Similarity=0.132 Sum_probs=117.0
Q ss_pred ChHHHHHHHHHHHHHHhc--cCCCchhh--hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCCh
Q 001429 118 DPSRHITSLTELCEVLSF--AMEDSLSS--MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAV 193 (1079)
Q Consensus 118 d~~~ql~Al~~L~~lLs~--~~~~~~~~--~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaI 193 (1079)
+..+.+-|+..|+++... ..++ +.. | ...++..|..+|....+.+++....+|+.+|...... .+ ..|=
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE-L~~f~F-QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~---nI-kSGW- 1222 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE-LANYNF-QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN---NV-KSGW- 1222 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh-hhchhH-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh---hh-hcCc-
Confidence 556777777777664321 1122 111 3 4568899999999877899999999999999875432 22 2343
Q ss_pred HHHHHHhhc----CCCHHHHHHHHHHHHHhhccCCcchhc--cCcccchhhccccC-------ChHHHH-HHHHHHH-Hh
Q 001429 194 PALCQRLKA----IEYLDVAEQCLQALEKISRDQPHACLE--GGAIMAALTYIDFF-------STSIQR-VALSTVA-NI 258 (1079)
Q Consensus 194 p~Lv~kLl~----~~~~dl~Eqal~aL~nIs~d~~~~Il~--~G~L~~LL~lLd~~-------~~~vqr-~A~~~ls-Nl 258 (1079)
+.+.. ++. ..+..+.+.|-.++..|..++-..+.. .+...-|+..|..| ++++.. ..+|.++ .+
T Consensus 1223 ktIF~-VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1223 KSMFM-VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHH-HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 33332 332 346899999999999999886433322 34555555554322 222211 1223221 11
Q ss_pred hcCC-----C------------------C------CchhhhhccHHHHHHh---hccCCHHHHHHHHHHHHHHHhccC--
Q 001429 259 CKKL-----P------------------S------ECPSHLMEAVPILSNL---LQYEDRQLVESVAICLIKIAEQLS-- 304 (1079)
Q Consensus 259 c~~~-----~------------------~------~~~~~v~~vlP~L~~L---L~~~D~~V~~~A~~als~I~~~~~-- 304 (1079)
..+. . . .......-.+|.|..+ ....+.+|+..|+..|-++...+.
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1110 0 0 0001123355655555 667889999999999999876531
Q ss_pred CCHHHHHHHHhCCchHHHHHhhc
Q 001429 305 QSSQMLDEVCSHGLINQTTHLLN 327 (1079)
Q Consensus 305 ~~~e~i~~lv~~gll~~Lv~LL~ 327 (1079)
-+++.-+.+++ ++|-+|..-+.
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHH
Confidence 14555566665 56677766654
No 247
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=41.81 E-value=2.9e+02 Score=30.97 Aligned_cols=139 Identities=9% Similarity=0.029 Sum_probs=77.6
Q ss_pred CHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC---------CChHHHHHHhhccCCCCccchh
Q 001429 306 SSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI---------LNIGSVLKDILSTYDLSHGMSS 376 (1079)
Q Consensus 306 ~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~---------~gi~~~L~~lL~~~~~e~~w~l 376 (1079)
+|+....++++.+.--|..+|+....+---.......+.++|.+++.++ .+++|...++|..++.-. -++
T Consensus 80 hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselS-Ktv 158 (262)
T PF04078_consen 80 HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELS-KTV 158 (262)
T ss_dssp -TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHH-HHH
T ss_pred ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHH-HHH
Confidence 6888888999998888888887542110012344678889999998777 677777777776543211 111
Q ss_pred hhhccCChHHHHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHH
Q 001429 377 PHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVIN 456 (1079)
Q Consensus 377 sni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~ 456 (1079)
+-. -+|.++. ++.--++++..+|.+...+. ++-.++.......++.+=|-++++-.
T Consensus 159 Atf------IlqKIL~-----------------dd~GL~yiC~t~eRf~av~~-vL~~mV~~l~~~pS~RLLKhIIrCYl 214 (262)
T PF04078_consen 159 ATF------ILQKILL-----------------DDVGLNYICQTAERFFAVAM-VLNKMVEQLVKQPSPRLLKHIIRCYL 214 (262)
T ss_dssp HHH------HHHHHHH-----------------SHHHHHHHTSSHHHHHHHHH-HHHHHHHHHHHS--HHHHHHHHHHHH
T ss_pred HHH------HHHHHHc-----------------chhHHHHHhcCHHHHHHHHH-HHHHHHHHHccCCChhHHHHHHHHHH
Confidence 100 0223321 12223345566776665553 44444444455667888888888888
Q ss_pred HhhccCCH-HHHHH
Q 001429 457 KLVYLSKS-DMLIE 469 (1079)
Q Consensus 457 ~iv~~~~~-~~L~~ 469 (1079)
|+...... +.|+.
T Consensus 215 RLsdnprar~aL~~ 228 (262)
T PF04078_consen 215 RLSDNPRAREALRQ 228 (262)
T ss_dssp HHTTSTTHHHHHHH
T ss_pred HHccCHHHHHHHHH
Confidence 88876544 44443
No 248
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=41.15 E-value=1.8e+02 Score=32.33 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=72.6
Q ss_pred cCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhH--------
Q 001429 115 EDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGL-------- 186 (1079)
Q Consensus 115 s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~-------- 186 (1079)
+...+++++.++.-+.-++-......+.-....++||-+++++..+ ...-+..|..++.-|......-...
T Consensus 135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~ 213 (293)
T KOG3036|consen 135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFS 213 (293)
T ss_pred CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH
Confidence 3446788999998888877655444445567889999999999998 4677888988877776543221110
Q ss_pred HHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 001429 187 LVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 187 VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d 222 (1079)
.| .-.+..++..|.+.++..+...++++.-+++.+
T Consensus 214 av-~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 214 AV-ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 11 123444555677777888888888888888744
No 249
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=40.65 E-value=1.3e+02 Score=30.17 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=38.9
Q ss_pred ccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCC
Q 001429 485 TRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 485 ~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
...++.+...||.+++.+++++...|...+-+...++.+.+|...
T Consensus 52 ~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 52 KHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc
Confidence 446677778999999999999999999999999999999998753
No 250
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=39.65 E-value=1.3e+02 Score=30.39 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 484 FTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 484 L~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
|.++++++.+.||.+++.+++++...|...+.+.+.++++-+|..
T Consensus 47 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~ 91 (139)
T cd03567 47 IQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVS 91 (139)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhc
Confidence 345667777899999999999999999999999999999988875
No 251
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.40 E-value=1.3e+02 Score=30.06 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=39.6
Q ss_pred ccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCC
Q 001429 485 TRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 485 ~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
..+++++.+.||.+++.+++++...|...+-..+.++.+.++...
T Consensus 47 ~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 47 NNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 446677778999999999999999999999999999999998764
No 252
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=39.25 E-value=2.9e+02 Score=34.04 Aligned_cols=166 Identities=10% Similarity=0.100 Sum_probs=111.5
Q ss_pred hhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCC----CHHHHHHHHHHHHHh
Q 001429 144 MMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE----YLDVAEQCLQALEKI 219 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~----~~dl~Eqal~aL~nI 219 (1079)
..++..+..+.+++.++ ++.-|.+|.--|+.+.. .+..+..+++...+..|.+ +.+.+ +-++.-+++.++..+
T Consensus 79 ~sp~~~a~~i~e~l~~~-~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~-liedg~~~~~~~~L~~~L~af~el 155 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEG-NNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFS-LIEDGRVCMSSELLSTSLRAFSEL 155 (713)
T ss_pred cCchHHHHHHHHHHhCC-CcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHH-HHHcCccchHHHHHHHHHHHHHHH
Confidence 34556778899999988 67778888888887764 4678888999999999984 77655 357888888888877
Q ss_pred hccCC--cchhccCcccchhhccccC--ChHHHHHHHHHHHHhhcCCCCCchhhhh--ccHHHHHHhhccCCHHHHHHHH
Q 001429 220 SRDQP--HACLEGGAIMAALTYIDFF--STSIQRVALSTVANICKKLPSECPSHLM--EAVPILSNLLQYEDRQLVESVA 293 (1079)
Q Consensus 220 s~d~~--~~Il~~G~L~~LL~lLd~~--~~~vqr~A~~~lsNlc~~~~~~~~~~v~--~vlP~L~~LL~~~D~~V~~~A~ 293 (1079)
-..+- ...+....+.....|..+. ..++...|+.++-++.-+.+... ..|. .-+..|...|+..|+.+...|.
T Consensus 156 mehgvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~-~~v~eev~i~~li~hlq~~n~~i~~~ai 234 (713)
T KOG2999|consen 156 MEHGVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLR-QLVAEEVPIETLIRHLQVSNQRIQTCAI 234 (713)
T ss_pred HhhceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHH-HHHHhcCcHHHHHHHHHhcchHHHHHHH
Confidence 65442 2234444444455555332 55677778888888877654332 3333 3577788889999999988866
Q ss_pred HHHHHHHhccCCCHHHHHHHHh
Q 001429 294 ICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 294 ~als~I~~~~~~~~e~i~~lv~ 315 (1079)
..+-.+.-+. .++....+++
T Consensus 235 al~nal~~~a--~~~~R~~~~~ 254 (713)
T KOG2999|consen 235 ALLNALFRKA--PDDKRFEMAK 254 (713)
T ss_pred HHHHHHHhhC--ChHHHHHHHH
Confidence 5554444332 4445555544
No 253
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.20 E-value=1.2e+02 Score=30.84 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=40.2
Q ss_pred ccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCC
Q 001429 485 TRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 485 ~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
.++++++.+.||.+++.+++++...|...+.....++.+.++...
T Consensus 47 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 47 NHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 346677788999999999999999999999999999999999864
No 254
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=38.72 E-value=1.2e+02 Score=30.55 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=63.4
Q ss_pred HHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCC-CCCC
Q 001429 256 ANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNS-RTTL 334 (1079)
Q Consensus 256 sNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~-~~~~ 334 (1079)
-.+|.-..... .-.++++-.|..-|++.++.++-.|+..+-.++.++ ....-..|.+.+.+..++.++.... +...
T Consensus 23 leicD~In~~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evas~~Fl~el~kl~~~k~~~~~~ 99 (139)
T cd03567 23 QAFCEQINKEP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNC--GERFHSEVGKFRFLNELIKLVSPKYLGSRT 99 (139)
T ss_pred HHHHHHHHcCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHHhHHHHHHHHHHhccccCCCCC
Confidence 34554432221 234678999999999999999999999999998874 3445566778899999999996421 1122
Q ss_pred CccHHHHHHHHHHHHh
Q 001429 335 SQPIYYGLIGLLVKIS 350 (1079)
Q Consensus 335 ~~~i~~~alr~L~nla 350 (1079)
...+...++.+|-.-+
T Consensus 100 ~~~Vk~kil~li~~W~ 115 (139)
T cd03567 100 SEKVKTKIIELLYSWT 115 (139)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4566666666665543
No 255
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=37.96 E-value=1.3e+02 Score=29.88 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=64.7
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLV 347 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~ 347 (1079)
...++++..|..-|.+.++.++-.|+..+-.++.++ ......++.+.+++..|+.++..... .+.+...++.++.
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc--g~~f~~ev~s~~fl~~L~~l~~~~~~---~~~Vk~kil~li~ 107 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC--GSKFHLEVASKEFLNELVKLIKPKYP---LPLVKKRILELIQ 107 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CHHHHHHHHhHHHHHHHHHHHcCCCC---cHHHHHHHHHHHH
Confidence 345788999999999999999999999999998873 34455667788899999999886532 1225666666665
Q ss_pred HHhcC---CC-CChHHHHHHhh
Q 001429 348 KISSG---SI-LNIGSVLKDIL 365 (1079)
Q Consensus 348 nlas~---s~-~gi~~~L~~lL 365 (1079)
.-+.. .+ .+.+.-++..|
T Consensus 108 ~W~~~f~~~~~~~~i~~~y~~L 129 (133)
T smart00288 108 EWADAFKNDPDLSQIVDVYDLL 129 (133)
T ss_pred HHHHHHcCCCCchHHHHHHHHH
Confidence 54332 23 44444444444
No 256
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.60 E-value=1.1e+02 Score=35.54 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHhCC--chHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 001429 287 QLVESVAICLIKIAEQLSQSSQMLDEVCSHG--LINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 287 ~V~~~A~~als~I~~~~~~~~e~i~~lv~~g--ll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~ 354 (1079)
+++.-=|.||++++--+ .+++....++..+ ++..|++||.... .+...+++.|+++|..|+....
T Consensus 234 ~~l~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~--~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 234 QLLQIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEE--KVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHhccc
Confidence 34444566666664332 2567788888877 9999999999764 5677899999999999988655
No 257
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=37.53 E-value=2.6e+02 Score=35.61 Aligned_cols=150 Identities=16% Similarity=0.058 Sum_probs=97.5
Q ss_pred HHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcC-------CCHHHHHHHHHHHHHhhc--c--CC-cchhccCcccc
Q 001429 168 LAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAI-------EYLDVAEQCLQALEKISR--D--QP-HACLEGGAIMA 235 (1079)
Q Consensus 168 ~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~-------~~~dl~Eqal~aL~nIs~--d--~~-~~Il~~G~L~~ 235 (1079)
.|.++|.-+..--++.+- .|.++-+++-|-++ .++--+|-|++.|.+|.. . +| ..+.+.=.++.
T Consensus 389 aal~fl~~~~sKrke~Tf----qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEETF----QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhhh----hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 577888877776555432 38888888744222 234456778888888865 2 22 23555545555
Q ss_pred hhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 236 ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 236 LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
++..+....--.+..||-+++.+-.. -.+.....++...-.++|++++-.|...|..|+..+..+ ++....+.
T Consensus 465 v~P~f~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~-----~q~h~k~s 537 (970)
T COG5656 465 VIPAFRSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN-----EQSHEKFS 537 (970)
T ss_pred hhHhhcCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc-----hhhhHHHH
Confidence 55555554455677899999888322 223344556777778888889989999999999887743 36666777
Q ss_pred CCchHHHHHhhcC
Q 001429 316 HGLINQTTHLLNL 328 (1079)
Q Consensus 316 ~gll~~Lv~LL~~ 328 (1079)
+.+.+-+-.||.-
T Consensus 538 ahVp~tmekLLsL 550 (970)
T COG5656 538 AHVPETMEKLLSL 550 (970)
T ss_pred hhhhHHHHHHHHh
Confidence 6666555566653
No 258
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.10 E-value=3.6e+02 Score=28.43 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=61.3
Q ss_pred HHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC--CHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHH
Q 001429 423 LLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS--KSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAE 500 (1079)
Q Consensus 423 ~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~--~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e 500 (1079)
.+++|...++ +++. +.+..||..++..+.-++..| +|-+.. +.|-.+.++.+..+=..|.++..
T Consensus 5 l~Qryl~~Il----~~~~-~~~~~vr~~Al~~l~~il~qGLvnP~~cv---------p~lIAL~ts~~~~ir~~A~~~l~ 70 (187)
T PF12830_consen 5 LVQRYLKNIL----ELCL-SSDDSVRLAALQVLELILRQGLVNPKQCV---------PTLIALETSPNPSIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHH----HHHh-CCCHHHHHHHHHHHHHHHhcCCCChHHHH---------hHhhhhhCCCChHHHHHHHHHHH
Confidence 4566665555 4554 458899999999999999876 665433 22333555666666689999999
Q ss_pred HHHHhhhHHHHHHHHHhCHHHHHHH
Q 001429 501 MILQKLSDTFLNSFVKEGVFFAIDA 525 (1079)
Q Consensus 501 ~Ll~k~p~~~~~~f~rEGv~~~I~~ 525 (1079)
.|.+|+|+.+...+. +|+-...+-
T Consensus 71 ~l~eK~~s~v~~~~~-~gi~~af~~ 94 (187)
T PF12830_consen 71 ELHEKHESLVESRYS-EGIRLAFDY 94 (187)
T ss_pred HHHHHhHHHHHHHHH-HHHHHHHHH
Confidence 999999986665544 487665543
No 259
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=36.94 E-value=4.8e+02 Score=30.41 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=132.0
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCC----chhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMED----SLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~----~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~ 178 (1079)
++.+..|+..|..- +-..+..+..-.+.++-...+. +.+.+.. ..=..|..++...+++++-..+.-.|...+.
T Consensus 75 ~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHHHHh
Confidence 36677788888776 7777777777777766543322 1222221 1111222233333456776666666666665
Q ss_pred cCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch---hccC---cccchhhccccCChHHHHHHH
Q 001429 179 IFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC---LEGG---AIMAALTYIDFFSTSIQRVAL 252 (1079)
Q Consensus 179 ~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I---l~~G---~L~~LL~lLd~~~~~vqr~A~ 252 (1079)
. ...++.+++...+-.+.+ ..+.+.-|++-.|..++.-+-..++..+ +..+ -....-++|....--++|.++
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~-~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFK-YVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHH-HTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHH-HhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 3 445677778888888884 7888999999999999998776654322 2111 122344556666677899999
Q ss_pred HHHHHhhcCCCCCch--hhh--hccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhh
Q 001429 253 STVANICKKLPSECP--SHL--MEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLL 326 (1079)
Q Consensus 253 ~~lsNlc~~~~~~~~--~~v--~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL 326 (1079)
..++.+--....-.+ .++ .+-+-.+.++|.+.-..|+-+|.-.+--.+.+=+.++...+.|+... ..|+.+|
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr--~kLl~fl 306 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR--EKLLRFL 306 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH--HHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHHHHH
Confidence 999998765322221 123 34688888999999999999999999887776433344444444331 3444444
No 260
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.28 E-value=3.4e+02 Score=35.47 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=55.1
Q ss_pred HHHHHHH--HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-----CCHHHHHHHHhcCCchHHHhhhhc
Q 001429 422 DLLQNFG--MDILPMLIQVVNSGANIFVCYGCLSVINKLVYL-----SKSDMLIELLKSANIPSFLAGVFT 485 (1079)
Q Consensus 422 ~~~~~f~--~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~-----~~~~~L~~ll~~~~i~s~La~iL~ 485 (1079)
..+-+|+ ..++|.|++....+-+.+++..+-..++.+++. +....++.|.+...|...|..||.
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 5566666 479999999998888899999999999999999 777888888888888888888887
No 261
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=35.32 E-value=2.4e+02 Score=35.64 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=75.3
Q ss_pred hhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 001429 143 SMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 143 ~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d 222 (1079)
.++...++|.|...+...+ .|.-.|+.+..-.......=...+.+|.|+ +|+.+.+.-++---|.-+.+....
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~------a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~-kLF~~~Dr~iR~~LL~~i~~~i~~ 360 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGD------AASDFLTPLFKLGKDLDEEEYQVRIIPVLL-KLFKSPDRQIRLLLLQYIEKYIDH 360 (690)
T ss_pred HHHHHHHHHHHHHHhhccc------cchhhhhHHHHhhhhccccccccchhhhHH-HHhcCcchHHHHHHHHhHHHHhhh
Confidence 3666777888777776653 233333333321111000003346788888 688888777776666666666555
Q ss_pred CCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 223 QPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 223 ~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
-...++..-+++.+..-+...+..+.-.++.++.-++-..... ..-.+.+-.|..+=..++..++.+.--|++.|+
T Consensus 361 Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 361 LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 5555666666665554443333333333444444333222111 122334445554444444445555555555544
No 262
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=35.10 E-value=3.5e+02 Score=35.34 Aligned_cols=184 Identities=10% Similarity=0.027 Sum_probs=114.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHH-hCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcch-
Q 001429 150 SPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLV-RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHAC- 227 (1079)
Q Consensus 150 Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV-~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~I- 227 (1079)
.|.|-.-|.++ +-.-..+|...+--+++... ...+- ..|-+-.++...+.-.++.+.-+++.+|+-|+..-+...
T Consensus 255 ~~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 255 TKNLETEMLSK-KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred ChHHHHhhhcc-chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 33444444444 45667788888887777544 11122 223444444323333478899999999999997654332
Q ss_pred -hccCcccchhhccccC---ChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhcc
Q 001429 228 -LEGGAIMAALTYIDFF---STSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQL 303 (1079)
Q Consensus 228 -l~~G~L~~LL~lLd~~---~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~ 303 (1079)
+..+..+.++..+... -.+..+.|+-++.|.+ ....+++.+...+.+..+.+...+...+.+.....
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST---------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 3356677777777653 2355666777777722 23456788888899999999999877777776653
Q ss_pred CCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcC
Q 001429 304 SQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSG 352 (1079)
Q Consensus 304 ~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~ 352 (1079)
. +...+.=.-.++++.++...+.. +..+...++++++.+...
T Consensus 403 ~--~~~~~~~t~~~l~p~~~~~~~D~-----~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 403 G--PKTVEKETVKTLVPHLIKHINDT-----DKDVRKAALEAVAAVMKV 444 (815)
T ss_pred C--CcCcchhhHHHHhHHHhhhccCC-----cHHHHHHHHHHHHHHHHH
Confidence 2 11111111124566666666554 677888888888877554
No 263
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=35.05 E-value=1.7e+02 Score=37.50 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=62.0
Q ss_pred HHHHhhccCCc---chhccCcccchhhccccC-ChHHHHHHHHHHHHhhcCCCCCchhhhhccH--HHHHHhhccCCH-H
Q 001429 215 ALEKISRDQPH---ACLEGGAIMAALTYIDFF-STSIQRVALSTVANICKKLPSECPSHLMEAV--PILSNLLQYEDR-Q 287 (1079)
Q Consensus 215 aL~nIs~d~~~---~Il~~G~L~~LL~lLd~~-~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vl--P~L~~LL~~~D~-~ 287 (1079)
+|.++..+.+. .+++.||+..++.++..| ...++++++..+.|++...+......+...+ -.+..++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 44577766664 478999999999999865 6789999999999999876444322222222 244445555554 7
Q ss_pred HHHHHHHHHHHHHhc
Q 001429 288 LVESVAICLIKIAEQ 302 (1079)
Q Consensus 288 V~~~A~~als~I~~~ 302 (1079)
.--.|+..++.+...
T Consensus 574 rsY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 574 RSYNAASILALLLSD 588 (699)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888764
No 264
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=35.03 E-value=3.8e+02 Score=33.82 Aligned_cols=89 Identities=25% Similarity=0.246 Sum_probs=55.4
Q ss_pred hHHHHHHHhcCCC---chhHHH--HHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhh----ccCcHHHHHHhhcCC
Q 001429 90 GLRELQRRRSSSD---HGKLRS--ILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMM----ADSLSPVLVKLARHE 160 (1079)
Q Consensus 90 ~l~~~~r~l~~~~---~~~l~~--lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~----~~g~Vp~LV~lL~~~ 160 (1079)
.+...++.+..+. +..++. .+..+.+- .+.+++-|+..||-++. +......+. -..++..|+..+..
T Consensus 525 ~~eeil~li~~s~~~~~e~~~~l~~l~~l~~w-p~~~~fPalDilRl~v~--h~~~~s~~~~~~~~~~~~~~li~~~~~- 600 (745)
T KOG0301|consen 525 GLEEILSLIKNSSHYSSEVLQSLLALAILLQW-PVEMMFPALDILRLAVK--HHSSNSLFCDREEGQNLVGTLIPILNA- 600 (745)
T ss_pred hHHHHHHhhcCCCCccchhHHHHHHHHHHhcC-CHHHhhhHHHHHHHHHh--ccchhhhhhhhhhhhHHHHhhhccccc-
Confidence 4445555555333 344555 44445444 67889999999975543 222222221 23478888888873
Q ss_pred CCHHHHHHHHHHHHHhhccCCcch
Q 001429 161 TNPDIMLLAVRAITYLCDIFPRSS 184 (1079)
Q Consensus 161 ~~~elq~~A~~aLtNIa~~~p~~~ 184 (1079)
++..|+.++|||.|++.+ |...
T Consensus 601 -~~an~ll~vR~L~N~f~~-~~g~ 622 (745)
T KOG0301|consen 601 -DPANQLLVVRCLANLFSN-PAGR 622 (745)
T ss_pred -chhHHHHHHHHHHHhccC-HHHH
Confidence 488899999999999987 4333
No 265
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.95 E-value=1.6e+02 Score=37.24 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=71.0
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLV 347 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~ 347 (1079)
+.+.+.+-.|..-..+.|..|+-.+|..|..+.+. ...++..+-.++...+...|... .+.+...|+.+|+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~----~~eidd~vfn~l~e~l~~Rl~Dr-----ep~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE----NAEIDDDVFNKLNEKLLIRLKDR-----EPNVRIQAVLALS 151 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc----ccccCHHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHH
Confidence 47788888888888899999999999999999984 22333344456777777777655 5678889999999
Q ss_pred HHhcC--CC-CChHHHHHHhhccCC
Q 001429 348 KISSG--SI-LNIGSVLKDILSTYD 369 (1079)
Q Consensus 348 nlas~--s~-~gi~~~L~~lL~~~~ 369 (1079)
.+--. ++ +.+..++..++....
T Consensus 152 rlQ~d~~dee~~v~n~l~~liqnDp 176 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLKDLIQNDP 176 (892)
T ss_pred HHhcCCCCCcccHHHHHHHHHhcCC
Confidence 98522 22 889999999998643
No 266
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=2.1e+02 Score=36.86 Aligned_cols=185 Identities=13% Similarity=0.189 Sum_probs=108.3
Q ss_pred hhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHh
Q 001429 236 ALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCS 315 (1079)
Q Consensus 236 LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~ 315 (1079)
.+.++...-+.++-.|+..++.+.++........-..++-+..+.|.+.|..|--+|...+.-+|+-+ .
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-----------~ 800 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-----------P 800 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-----------c
Confidence 34445555667888899999999987655555566789999999999999999999999998888752 3
Q ss_pred CCchHHHHH-hhcCCCCCCCCc-----cHHHHHHHHHHHHhcCCCCChHHH-HHHhhccCC-CCccchhhhhc-cCChHH
Q 001429 316 HGLINQTTH-LLNLNSRTTLSQ-----PIYYGLIGLLVKISSGSILNIGSV-LKDILSTYD-LSHGMSSPHMV-DGHCNQ 386 (1079)
Q Consensus 316 ~gll~~Lv~-LL~~~~~~~~~~-----~i~~~alr~L~nlas~s~~gi~~~-L~~lL~~~~-~e~~w~lsni~-ag~~~q 386 (1079)
..++|-+.+ ..+.......+. .++...++.+|-|+.+ ..+. +-..|.+.+ +++.|-.|.++ .| +
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~----y~~~Li~tfl~gvrepd~~~RaSS~a~lg---~ 873 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK----YKAVLINTFLSGVREPDHEFRASSLANLG---Q 873 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH----HHHHHHHHHHHhcCCchHHHHHhHHHHHH---H
Confidence 355666666 333221111111 2233344444444332 2222 223344433 24555554321 11 1
Q ss_pred HHHHHHHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHH
Q 001429 387 VHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDM 466 (1079)
Q Consensus 387 i~~vi~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~ 466 (1079)
+-.+.. -.+..|+..++-.++.+-.-...+-|||.|+..|.-.+++...+.
T Consensus 874 Lcq~~a-----------------------------~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 874 LCQLLA-----------------------------FQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHh-----------------------------hhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 111110 001124445555666665556788999999999988888766544
Q ss_pred H
Q 001429 467 L 467 (1079)
Q Consensus 467 L 467 (1079)
|
T Consensus 925 L 925 (982)
T KOG4653|consen 925 L 925 (982)
T ss_pred H
Confidence 3
No 267
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=34.62 E-value=2.4e+02 Score=31.63 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCC
Q 001429 125 SLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE 204 (1079)
Q Consensus 125 Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~ 204 (1079)
|+.-|-=++.. +++.-..|.....+..|+.+|.....+.+|..+..+|-.++-.+|......-+.|++..++. ++...
T Consensus 111 aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~-llk~~ 188 (257)
T PF08045_consen 111 ALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS-LLKSK 188 (257)
T ss_pred HHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH-HHccc
Confidence 34444333332 34444458888999999999976557999999999999999999999998889999999994 77654
Q ss_pred --CHHHHHHHHHHHHHhhcc
Q 001429 205 --YLDVAEQCLQALEKISRD 222 (1079)
Q Consensus 205 --~~dl~Eqal~aL~nIs~d 222 (1079)
..++.=.|+..|-....+
T Consensus 189 ~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 189 STDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccHHHhHHHHHHHHHHHcc
Confidence 456666666665444433
No 268
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=34.06 E-value=7.9e+02 Score=28.38 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHhcCCchHHHhhhhccCChhHHHHHHHHHHH-HHH--hhhHHHHHHHHHhCHHH
Q 001429 445 IFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEM-ILQ--KLSDTFLNSFVKEGVFF 521 (1079)
Q Consensus 445 ~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~-Ll~--k~p~~~~~~f~rEGv~~ 521 (1079)
.+||...+..++..+.++++....+++....+-+.+-.-|...++.+|..+|+.++. +++ ++|-.-...|--|.++.
T Consensus 128 ~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 128 PSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS 207 (330)
T ss_pred cCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence 389999999999999999999999999775443333333455566677777777662 332 23444555666778888
Q ss_pred HHHHhcCCC
Q 001429 522 AIDALLTPE 530 (1079)
Q Consensus 522 ~I~~L~~~~ 530 (1079)
+|.+|....
T Consensus 208 ~l~~Ly~~~ 216 (330)
T PF11707_consen 208 QLASLYSRD 216 (330)
T ss_pred HHHHHhccc
Confidence 888887754
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=33.86 E-value=2.1e+02 Score=28.37 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=58.9
Q ss_pred hhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHH
Q 001429 269 HLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVK 348 (1079)
Q Consensus 269 ~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~n 348 (1079)
..++++..|..-|.+.++.++-.|+..+-.++.++ .+.....+.+...+..|+.++... ......+...++.+|..
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc--g~~f~~~i~s~~fl~~l~~l~~~~--~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC--GKPFHLQVADKEFLLELVKIAKNS--PKYDPKVREKALELILA 109 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--ChHHHHHHhhHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999998873 233445566668888899998753 12356677777777776
Q ss_pred Hhc
Q 001429 349 ISS 351 (1079)
Q Consensus 349 las 351 (1079)
-+.
T Consensus 110 W~~ 112 (133)
T cd03561 110 WSE 112 (133)
T ss_pred HHH
Confidence 544
No 270
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.64 E-value=1.2e+03 Score=30.41 Aligned_cols=223 Identities=14% Similarity=0.178 Sum_probs=117.7
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHH-----HHHhh---cCCCCCCCCccHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQ-----TTHLL---NLNSRTTLSQPIY 339 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~-----Lv~LL---~~~~~~~~~~~i~ 339 (1079)
.+...++|.|.+.|..+..-|-..|+.|+-.|-.- +++ .-..++.++.+.+ +.+|. ..+ +..-+.-+.
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v-re~--~~~~if~~~~iap~~~~ll~nLf~a~s~p-~~~Eneylm 569 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV-REN--SNAKIFGAEDIAPFVEILLTNLFKALSLP-GKAENEYLM 569 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc-ccC--ccccccchhhcchHHHHHHHHHHHhccCC-cccccHHHH
Confidence 45678999999999999888999999999876532 111 1112333332222 22233 222 122234444
Q ss_pred HHHHHHHHHHhcCC-C--CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHHHHhhcccccccCccchhhccccchh
Q 001429 340 YGLIGLLVKISSGS-I--LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSF 416 (1079)
Q Consensus 340 ~~alr~L~nlas~s-~--~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi~li~~LlP~l~~~~~~~~~~~r~~~ 416 (1079)
..+.|+++..=..- + --++..|-+++....++. .++..-+.+.+-|+-++....+
T Consensus 570 KaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP---------s~P~fnHYLFEsi~~li~~t~~------------- 627 (960)
T KOG1992|consen 570 KAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP---------SNPQFNHYLFESIGLLIRKTCK------------- 627 (960)
T ss_pred HHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC---------CCchhHHHHHHHHHHHHHHHhc-------------
Confidence 55566655432211 0 112223333333322211 1233345566655555544433
Q ss_pred cccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCH---HHHHHHHhcCCchHHHhhhhc---cCChh
Q 001429 417 LVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS---DMLIELLKSANIPSFLAGVFT---RKDHH 490 (1079)
Q Consensus 417 l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~---~~L~~ll~~~~i~s~La~iL~---~~d~~ 490 (1079)
.+|..+..|...|+|++-.++.... .+.=-+++-.+.-+|..+.. +... +++--+|+ ++-..
T Consensus 628 --~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~~ip~~~~---------~l~~~lLsp~lW~r~g 695 (960)
T KOG1992|consen 628 --ANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSGTIPDSYS---------PLFPPLLSPNLWKRSG 695 (960)
T ss_pred --cCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchhHH---------HHHHHhcCHHHHhhcC
Confidence 4578889999999999999987553 33445666666666554332 2222 22222222 11111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 491 VLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 491 ~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
-+-.++.+++.++++.+..+...=.=.||+--.++|..
T Consensus 696 NipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 696 NIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred CcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 23455666777788888765511113567777777765
No 271
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=33.63 E-value=2.3e+02 Score=33.12 Aligned_cols=94 Identities=18% Similarity=0.114 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhcc----------CCHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001429 245 TSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQY----------EDRQLVESVAICLIKIAEQLSQSSQMLDEVC 314 (1079)
Q Consensus 245 ~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~----------~D~~V~~~A~~als~I~~~~~~~~e~i~~lv 314 (1079)
....+..+.++.-+..+..-.-..++..++|.+..+|-. +.-.+++.|+..+++|+..|....
T Consensus 231 l~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y------- 303 (343)
T cd08050 231 LALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY------- 303 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC-------
Confidence 455666777777777775444445778899999988632 224689999999999998875433
Q ss_pred hCCchHHHHH----hhcCCCCCCCCccHHHHHHHHHHHH
Q 001429 315 SHGLINQTTH----LLNLNSRTTLSQPIYYGLIGLLVKI 349 (1079)
Q Consensus 315 ~~gll~~Lv~----LL~~~~~~~~~~~i~~~alr~L~nl 349 (1079)
.++-+++++ .|.... ....++-.|+..|+.+
T Consensus 304 -~~l~~ri~~tl~k~l~d~~---~~~~~~YGAi~GL~~l 338 (343)
T cd08050 304 -NTLQPRITRTLLKALLDPK---KPLTTHYGAIVGLSAL 338 (343)
T ss_pred -CcHHHHHHHHHHHHHcCCC---CCcchhhHHHHHHHHh
Confidence 234455553 333221 1223355677766665
No 272
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.54 E-value=2.8e+02 Score=37.08 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=88.3
Q ss_pred chhHHHHHHHhc----cCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q 001429 103 HGKLRSILACLS----EDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCD 178 (1079)
Q Consensus 103 ~~~l~~lv~~L~----s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~ 178 (1079)
-+++..+|..+- .-.||.+|..|.-+|+++-..+.+ | -..-+|.|+.+|....+|-++..++-+|+-++-
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----f-ces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----F-CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----H-HHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 467777777764 235899999999999998655432 3 234689999999844479999999989888887
Q ss_pred cCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccC
Q 001429 179 IFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF 243 (1079)
Q Consensus 179 ~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~ 243 (1079)
..|-.... --+.|-.+| .-++..+++.|+-+|.++.-.+ .|-=.|.+.-+..+|...
T Consensus 991 ~fpnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~ 1047 (1251)
T KOG0414|consen 991 RFPNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDP 1047 (1251)
T ss_pred hcccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCC
Confidence 66643322 235566444 4467999999999999986432 222256666666666543
No 273
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=32.82 E-value=1.9e+02 Score=35.78 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=71.6
Q ss_pred hhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHH
Q 001429 267 PSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLL 346 (1079)
Q Consensus 267 ~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L 346 (1079)
...|.+.+-.+...+.+.|.+|+..+|..|+.+++.. .-++..+-.|++..|...+-.. .+.+...|+.+|
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v----~eIDe~l~N~L~ekl~~R~~DR-----E~~VR~eAv~~L 156 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV----REIDEVLANGLLEKLSERLFDR-----EKAVRREAVKVL 156 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHH
Confidence 4678888888888899999999999999999999864 2355666678888988877655 566777899999
Q ss_pred HHHhcCCC---CChHHHHHHhhccC
Q 001429 347 VKISSGSI---LNIGSVLKDILSTY 368 (1079)
Q Consensus 347 ~nlas~s~---~gi~~~L~~lL~~~ 368 (1079)
...-..+. ..+..+|..+++..
T Consensus 157 ~~~Qe~~~neen~~~n~l~~~vqnD 181 (885)
T COG5218 157 CYYQEMELNEENRIVNLLKDIVQND 181 (885)
T ss_pred HHHHhccCChHHHHHHHHHHHHhcC
Confidence 88754433 55566777777653
No 274
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.77 E-value=96 Score=35.40 Aligned_cols=126 Identities=10% Similarity=0.015 Sum_probs=81.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCC---HHHHHHHHHHHHHhhccC-C
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEY---LDVAEQCLQALEKISRDQ-P 224 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~---~dl~Eqal~aL~nIs~d~-~ 224 (1079)
++..+|+=+++. ...+-..||-++.-|++.....+.. ....++-.|+-... .=+.|.|..+|..+...- |
T Consensus 130 vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 130 VIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred HHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh
Confidence 456677777776 4678889999999999877766555 33334433443333 337888888888876542 4
Q ss_pred cchhccCcccchhhccccCChHHHHHHHHHHHHhhcCC--CCCchhhhhccHHHHHHhhccCC
Q 001429 225 HACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKL--PSECPSHLMEAVPILSNLLQYED 285 (1079)
Q Consensus 225 ~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~--~~~~~~~v~~vlP~L~~LL~~~D 285 (1079)
..+ ++.|+.++.++...+.++++-+.+|+.... ++-....+.+.++.+.+-+...=
T Consensus 204 ~~~-----L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 204 QKL-----LRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHH-----HHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccc
Confidence 333 445666777888889999988888876543 33333445566666655544433
No 275
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=32.73 E-value=3.5e+02 Score=30.32 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=38.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001429 149 LSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISR 221 (1079)
Q Consensus 149 ~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~ 221 (1079)
.+.-|.++|+.++ ++.. ..+++|+.. .||...-||.|++ ..+..+++..|+..|-+++-
T Consensus 14 ~LkdL~r~lr~dd-~~~~-~v~r~lg~~---------~iv~~DLiPiL~~---~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 14 CLKDLKRFLRRDD-EDQR-DVRRQLGEW---------NIVQKDLIPILIS---YKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHhC-cchH-HHHHHHHHh---------chhhhhHHHHHHh---ccCchHHHHHHHHHHHHhCC
Confidence 4566777777653 3333 556666542 3666677887764 23367888888888888874
No 276
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=32.57 E-value=1.1e+02 Score=27.78 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=47.2
Q ss_pred cCcHHHHHHhhcCCCCHHHHH-HHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001429 147 DSLSPVLVKLARHETNPDIML-LAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKIS 220 (1079)
Q Consensus 147 ~g~Vp~LV~lL~~~~~~elq~-~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs 220 (1079)
+|+|...-+||-.+.++++.. .-.|||++-+. -.+|+|. +--...+++-.++.-..+..|=
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W~lYshia------------KsMPpL~-kHWN~~~PeaK~~ik~li~~Ik 70 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQWALYSHIA------------KSMPPLA-KHWNGTYPEAKEEIKELIEEIK 70 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH------------HhCcHHH-HhhcccCchHHHHHHHHHHHHH
Confidence 477888888888887888876 56899998654 4689999 4666778998888777777663
No 277
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=31.95 E-value=1.4e+02 Score=30.60 Aligned_cols=133 Identities=14% Similarity=0.223 Sum_probs=89.2
Q ss_pred HHHHHHHhccCC---CchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc--CCcchhHHHhCCChHHHHHHhh
Q 001429 127 TELCEVLSFAME---DSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDI--FPRSSGLLVRHDAVPALCQRLK 201 (1079)
Q Consensus 127 ~~L~~lLs~~~~---~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~--~p~~~~~VV~~GaIp~Lv~kLl 201 (1079)
+.+++++-.++. ..++.|.+..++..|+++|+......++.+....++-+... ++.....+...+.|-.++..=.
T Consensus 2 r~iaE~~iwGDq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~ 81 (149)
T PF09758_consen 2 RSIAEILIWGDQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPF 81 (149)
T ss_pred hhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCC
Confidence 456666655443 23466888999999999999855677777777777666653 4556667778888888886555
Q ss_pred cCCCHHHHHHHHHHHHHhhccC-Ccc---hh--ccCcccchhhccccC--ChHHHHHHHHHHH-Hhh
Q 001429 202 AIEYLDVAEQCLQALEKISRDQ-PHA---CL--EGGAIMAALTYIDFF--STSIQRVALSTVA-NIC 259 (1079)
Q Consensus 202 ~~~~~dl~Eqal~aL~nIs~d~-~~~---Il--~~G~L~~LL~lLd~~--~~~vqr~A~~~ls-Nlc 259 (1079)
.-.+.|+...=+.-|..||..- +.. .+ +.+..|-+..-+.|. +..+.|.|+.++. |++
T Consensus 82 d~~~ee~l~yYIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 82 DFSDEEVLSYYISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred CCCcchhHHHHHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 6667899999888999888753 222 12 244555444444443 6677788777654 544
No 278
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=31.81 E-value=51 Score=38.20 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=29.8
Q ss_pred CceEEEEeCCccCCCCccHHHHHHHHHHhcCCCccccccCcccceEEEEeec
Q 001429 878 KIKLTFDLDGQKLERTLTLYQAILQKQIKTDGEVIAGAKLWTQVYTIIYRRA 929 (1079)
Q Consensus 878 ~~~L~F~l~g~~l~~~~Tiy~Av~~~~~~~~~~~~~~~~iW~~~~tI~yr~~ 929 (1079)
...||++-+|++|+++||+ ++|+.+.=+.+.| -.+.||+.
T Consensus 290 ~e~lEl~C~gqvL~~~mtL-aTVr~~~WK~~~d-----------i~L~YR~k 329 (331)
T PF11816_consen 290 EEWLELLCNGQVLPPDMTL-ATVRTFIWKSSGD-----------IVLHYRRK 329 (331)
T ss_pred CceEEEEeCCeEcCCcCCH-HHHHHhhccCCCe-----------EEEEEEec
Confidence 4489999999999999998 7787664333333 46778863
No 279
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.44 E-value=2.3e+02 Score=28.14 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=60.3
Q ss_pred HHHHhcCCCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhh-hhccCcHHHHHHhhcC--CCCHHHHHHHH
Q 001429 94 LQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSS-MMADSLSPVLVKLARH--ETNPDIMLLAV 170 (1079)
Q Consensus 94 ~~r~l~~~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~-~~~~g~Vp~LV~lL~~--~~~~elq~~A~ 170 (1079)
..+.-..|....++.|...|+.. +|..|+-|+.-| +.+.......+.. |....++-.|+.++.. ..+++++.-+.
T Consensus 27 ~I~~~~~~~k~a~raL~krl~~~-n~~vql~AL~lL-d~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil 104 (133)
T cd03561 27 LINLKPNGPKEAARAIRKKIKYG-NPHVQLLALTLL-ELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKAL 104 (133)
T ss_pred HHhCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHH-HHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 34433344566778888888887 999999998877 5555444555544 6566889999999986 34678888777
Q ss_pred HHHHHhhccCC
Q 001429 171 RAITYLCDIFP 181 (1079)
Q Consensus 171 ~aLtNIa~~~p 181 (1079)
..|-+-+...+
T Consensus 105 ~ll~~W~~~f~ 115 (133)
T cd03561 105 ELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHhc
Confidence 77766665444
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=30.97 E-value=2.1e+02 Score=28.92 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=39.4
Q ss_pred ccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcCC
Q 001429 485 TRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 485 ~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
..+++++.+.||.+++.+++.+...|...+...+.++.+.++...
T Consensus 51 ~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~ 95 (142)
T cd03569 51 LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT 95 (142)
T ss_pred cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc
Confidence 345677778999999999999999999999999999999999863
No 281
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=30.64 E-value=1.6e+02 Score=27.17 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCCHHHHHHHHhcC--CchHHHhhhhccCChhHHHHHHHHHHH
Q 001429 427 FGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSA--NIPSFLAGVFTRKDHHVLILALEIAEM 501 (1079)
Q Consensus 427 f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~--~i~s~La~iL~~~d~~~l~~aLq~~e~ 501 (1079)
|=+.+|-.+..+|.++.+.+||..++.+|..|+.... +.|+ ++ ++=+.+.......+..++..|.++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-~~i~----SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-ENIK----SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-HHHH----hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4456677788888888899999999999999998532 2222 21 111334444444566777888887764
No 282
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=30.48 E-value=5e+02 Score=31.88 Aligned_cols=185 Identities=11% Similarity=0.057 Sum_probs=87.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhcc--CCcchhHHH--------hCCChHHHHHHhhcCCC-------HHHHH
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDI--FPRSSGLLV--------RHDAVPALCQRLKAIEY-------LDVAE 210 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~--~p~~~~~VV--------~~GaIp~Lv~kLl~~~~-------~dl~E 210 (1079)
.+|..|.+++.......+|-.|+|-|+++--. +..+.+.-| +.-.|.+.+.-+.+.+. +.+..
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 57888888888776788999999999988422 111111111 11122222221111110 11222
Q ss_pred HHHHHHHHhhccC---Ccchhc-cCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchh-hhh-ccHHHHHHhhccC
Q 001429 211 QCLQALEKISRDQ---PHACLE-GGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPS-HLM-EAVPILSNLLQYE 284 (1079)
Q Consensus 211 qal~aL~nIs~d~---~~~Il~-~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~-~v~-~vlP~L~~LL~~~ 284 (1079)
-++.-|+.-+ .-.-+. +-.+.+++.+ +|+..+|+-++.+..-=|... +... .+. =+.|.|+.-|...
T Consensus 177 ---vvl~~ia~vgeS~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSS--qsAa~fLg~WlsPpli~sLs~~ 249 (589)
T PF11229_consen 177 ---VVLKPIATVGESYQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSS--QSAAMFLGSWLSPPLIHSLSVN 249 (589)
T ss_pred ---HHHHHhhhcCCCCCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhcccc--ccHHHHHHhhcCcchhhhhhHH
Confidence 2233332211 000000 1123444444 458899998887655434322 2222 222 2677777776655
Q ss_pred CHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHH
Q 001429 285 DRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKI 349 (1079)
Q Consensus 285 D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nl 349 (1079)
-.+-+-...-.+..-+ .+++++.+++.=+ ++.+....+ .-++..+..+++-|..-
T Consensus 250 tk~~L~~Sl~~wmkhV-----sedqiQ~Fve~l~----vq~F~~~~~-~~~~~lC~saLqGLsqA 304 (589)
T PF11229_consen 250 TKKYLFESLSLWMKHV-----SEDQIQAFVENLM----VQQFKAASR-PSNPELCQSALQGLSQA 304 (589)
T ss_pred HHHHHHHHHHHHHhhC-----CHHHHHHHHHHHH----HHHHhhcCC-CCChHHHHHHHHHHHHH
Confidence 3332222222222222 6788888876422 333332110 11456666666666553
No 283
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.75 E-value=3.2e+02 Score=28.94 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=47.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCC-------------------chHHHHHhhcCCCCCCCCc
Q 001429 276 ILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHG-------------------LINQTTHLLNLNSRTTLSQ 336 (1079)
Q Consensus 276 ~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~g-------------------ll~~Lv~LL~~~~~~~~~~ 336 (1079)
.+.-++.+++.+++..|+.+++.|-+| ....+...-+.+ +=..|+..|.... +.
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~g---sk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~----~~ 116 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEG---SKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK----SP 116 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHc---cHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc----cc
Confidence 344457788999999999999999887 333322222111 1123344444332 56
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 001429 337 PIYYGLIGLLVKISSGSI 354 (1079)
Q Consensus 337 ~i~~~alr~L~nlas~s~ 354 (1079)
.+.+.++++|+.++.+.|
T Consensus 117 ~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 117 PVLTQLLKCLAVLVQATP 134 (182)
T ss_pred HHHHHHHHHHHHHHccCC
Confidence 788899999999999999
No 284
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=29.25 E-value=2.5e+02 Score=31.51 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=39.7
Q ss_pred CChHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 191 DAVPALCQRLKAI-EYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 191 GaIp~Lv~kLl~~-~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
-+||.|...|... +.+-++--|+.|||.|+.+.. +..|-.|+.. ...+.|..|-+.-.++..
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~--------~~vL~e~~~D-~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC--------VEVLKEYLGD-EERVVRESCEVALDMLEY 280 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH--------HHHHHHHcCC-cHHHHHHHHHHHHHHHHH
Confidence 3689999766644 467888899999999998653 3333444443 445555555554444443
No 285
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.03 E-value=1.4e+02 Score=34.49 Aligned_cols=76 Identities=28% Similarity=0.394 Sum_probs=52.0
Q ss_pred HHHHHHHHhccCCCch-hhhhccC--cHHHHHHhhcCCC--CHHHHHHHHHHHHHhhccCCcchhHH------HhCCChH
Q 001429 126 LTELCEVLSFAMEDSL-SSMMADS--LSPVLVKLARHET--NPDIMLLAVRAITYLCDIFPRSSGLL------VRHDAVP 194 (1079)
Q Consensus 126 l~~L~~lLs~~~~~~~-~~~~~~g--~Vp~LV~lL~~~~--~~elq~~A~~aLtNIa~~~p~~~~~V------V~~GaIp 194 (1079)
+.+++.+..+..++.. ..+...+ ++-.|+++++.++ ..++|..|.++|+-|+...+.+.+.+ +++|.++
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~ 319 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILP 319 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHH
Confidence 3455555545544433 3354555 9999999998763 36899999999999998766544432 3588888
Q ss_pred HHHHHhh
Q 001429 195 ALCQRLK 201 (1079)
Q Consensus 195 ~Lv~kLl 201 (1079)
.++.+..
T Consensus 320 ~llR~~v 326 (329)
T PF06012_consen 320 QLLRKCV 326 (329)
T ss_pred HHHHHHH
Confidence 8886543
No 286
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=28.87 E-value=3.2e+02 Score=30.65 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=80.4
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCCh-HHHHHHHHHHHHhhcCCCCCc-hhh
Q 001429 192 AVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFST-SIQRVALSTVANICKKLPSEC-PSH 269 (1079)
Q Consensus 192 aIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~-~vqr~A~~~lsNlc~~~~~~~-~~~ 269 (1079)
+++-|. +|.+.-.-.++...+.++..+.+..+..-. +.... ...-.|+.++--+|--.|+.. +-.
T Consensus 64 ~~~eF~-~LQ~~Fe~Nl~~~Lv~~l~~l~~~~~~~~~------------~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~ 130 (257)
T PF08045_consen 64 ALREFQ-KLQEGFEWNLASRLVSWLDRLLGRGSHIDG------------DSPSNDSLIALALRVLQGLCLLHPPSRKLFH 130 (257)
T ss_pred hHHHHH-HhHHHhhcchhhhhHHHHHHHHhhcccccC------------cccchhHHHHHHHHHHHHHHHcCchHHHHHh
Confidence 445555 455544456667777777776544321100 22222 234557778877776544443 223
Q ss_pred hhccHHHHHHhhc-cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCC
Q 001429 270 LMEAVPILSNLLQ-YEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLN 329 (1079)
Q Consensus 270 v~~vlP~L~~LL~-~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~ 329 (1079)
-...+..|.++|. .....|...++-++..+.-. ++.....+-..+.+..++.++...
T Consensus 131 r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld---~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 131 REQNMELLLDLLSPSNPPAIQSACLDTLVCILLD---SPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc---ChHHHHHHHHhCCHHHHHHHHccc
Confidence 4568999999994 46788888888888777655 788888787889999999999876
No 287
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=28.80 E-value=1.1e+03 Score=28.75 Aligned_cols=175 Identities=14% Similarity=0.183 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHhccCCCch--hhhhccCcHHHHHHhhcCC----CCHHHHH--HHHHHHHHhhccCCcch--hHHHh
Q 001429 120 SRHITSLTELCEVLSFAMEDSL--SSMMADSLSPVLVKLARHE----TNPDIML--LAVRAITYLCDIFPRSS--GLLVR 189 (1079)
Q Consensus 120 ~~ql~Al~~L~~lLs~~~~~~~--~~~~~~g~Vp~LV~lL~~~----~~~elq~--~A~~aLtNIa~~~p~~~--~~VV~ 189 (1079)
..|+.|+--.++..-..+=... ..+-..-.-+-+-++|... +.|+... .+.-.|+-.+.. |+-. ..+|
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~v- 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEMV- 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHHH-
Confidence 6777777777765432111111 1111121234455555543 2344322 344555555543 3321 2355
Q ss_pred CCChHHHHHHhhcCCCHH------HHHHHHHHHHHhhccC--CcchhccCcccchhhcccc-CChHHHHHHHHHHHHhhc
Q 001429 190 HDAVPALCQRLKAIEYLD------VAEQCLQALEKISRDQ--PHACLEGGAIMAALTYIDF-FSTSIQRVALSTVANICK 260 (1079)
Q Consensus 190 ~GaIp~Lv~kLl~~~~~d------l~Eqal~aL~nIs~d~--~~~Il~~G~L~~LL~lLd~-~~~~vqr~A~~~lsNlc~ 260 (1079)
+.||.|.+-+-.-.+.| +.+.|-.+|..+++.. +...+..|+++.+-|.-.- ...+-+.-|+-++--...
T Consensus 104 -~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~ 182 (698)
T KOG2611|consen 104 -SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVS 182 (698)
T ss_pred -HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence 68999997554444555 8999999999999875 3568999999998875332 222233333333322222
Q ss_pred CC-----CCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 001429 261 KL-----PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIA 300 (1079)
Q Consensus 261 ~~-----~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~ 300 (1079)
+. ..+.| ..++..+..=....+....-+.|..++.+-
T Consensus 183 ~~~cw~e~~~~f---lali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 183 KLDCWSETIERF---LALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred hcccCcCCHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 21 11122 222333333344455666777888888554
No 288
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.98 E-value=3.9e+02 Score=34.52 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=91.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
..-|+.+...+..+ ++..-...+..++.+.....-++.. .....-|...++ +.. -..+....+++|..+++-.|+
T Consensus 440 ~~lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~-N~~-~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 440 PNLWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQF-NKS-LGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHH-HHH-HHHHHHHHHHHHHHHhcCCHH
Confidence 45677777777765 7776666677776665443322222 111122222111 110 123444678999999999999
Q ss_pred chhHHHh-CCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccCChHHHHHHHHHHHHhhcC
Q 001429 183 SSGLLVR-HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKK 261 (1079)
Q Consensus 183 ~~~~VV~-~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~ 261 (1079)
....++. .+++.+++. ++-+++.++.+.|...|..+.+.. |-..++-.+|..+-....+-..|.+.++...
T Consensus 515 ~L~~l~~d~~~~~~i~s-~lfsp~~~l~qaA~~llk~~~d~~-------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWS-LLFSPDDDLYQAAQDLLKQAFDVD-------GRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHHHHcCcchhhHHHh-heeCCChHHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 9988884 678888886 777899999999999999998532 2223333444454555566666777666543
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.90 E-value=1e+02 Score=29.97 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=50.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHH-HHHHHHHHHhhccC
Q 001429 148 SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVA-EQCLQALEKISRDQ 223 (1079)
Q Consensus 148 g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~-Eqal~aL~nIs~d~ 223 (1079)
-++|.+.+.|.....+|.|.-|--.++.++.-.+=. ..++..|++.+......... .+++-+|..|++.+
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 368899999995557899988888888888755432 23455666666655555545 89999999998665
No 290
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=26.51 E-value=9.2e+02 Score=28.37 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=96.4
Q ss_pred hhccCcHHHHHHhhcCC----CCHHHHHHHHHHHHHhhccCCcchhHHHhCC-ChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001429 144 MMADSLSPVLVKLARHE----TNPDIMLLAVRAITYLCDIFPRSSGLLVRHD-AVPALCQRLKAIEYLDVAEQCLQALEK 218 (1079)
Q Consensus 144 ~~~~g~Vp~LV~lL~~~----~~~elq~~A~~aLtNIa~~~p~~~~~VV~~G-aIp~Lv~kLl~~~~~dl~Eqal~aL~n 218 (1079)
+.....+..++..+..- ....+..++..++.++....|+.. +.+.+ =+|.++..++ +...+++.+|+..+..
T Consensus 125 ~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~-~~~k~ir~~a~~l~~~ 201 (372)
T PF12231_consen 125 IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLL-SSAKDIRTKAISLLLE 201 (372)
T ss_pred ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHH
Confidence 33444555555555322 235688899999999999887643 22333 4678886555 4567788877777766
Q ss_pred hhccC-Cc--------chhccCcccc---------hhhccccCChHHHHHHHHHHHHhhcCCC-CCchhhhhccHHHHHH
Q 001429 219 ISRDQ-PH--------ACLEGGAIMA---------ALTYIDFFSTSIQRVALSTVANICKKLP-SECPSHLMEAVPILSN 279 (1079)
Q Consensus 219 Is~d~-~~--------~Il~~G~L~~---------LL~lLd~~~~~vqr~A~~~lsNlc~~~~-~~~~~~v~~vlP~L~~ 279 (1079)
++..- +. .+++..-.+. +-.++..........-+|.+-=.--+.+ ........+.+...-.
T Consensus 202 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~ 281 (372)
T PF12231_consen 202 AKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEK 281 (372)
T ss_pred HHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHH
Confidence 65432 11 1232222222 2333333234444445565543333433 4556778888888888
Q ss_pred hhccCCHHHHHHHHHHHHHHHhcc
Q 001429 280 LLQYEDRQLVESVAICLIKIAEQL 303 (1079)
Q Consensus 280 LL~~~D~~V~~~A~~als~I~~~~ 303 (1079)
..+++|+.++..|.-|.-++++.+
T Consensus 282 cFn~~d~~~k~~A~~aW~~liy~~ 305 (372)
T PF12231_consen 282 CFNSSDPQVKIQAFKAWRRLIYAS 305 (372)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888888754
No 291
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=25.96 E-value=3.4e+02 Score=28.84 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=55.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCC
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP 181 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p 181 (1079)
+.-++-++++|+..+. -..+.|.+.+.++|.....+.+--+ .-.+|+.|-+-|+.. |+++...+..||-.|+..++
T Consensus 37 ~~~Lpif~dGL~Et~~-Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEH-PYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCc-cHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 5678889999998844 5567888888888876333322222 125777788888887 69999999999999965544
No 292
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.92 E-value=2.9e+02 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=38.2
Q ss_pred HhhhhccCChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHh
Q 001429 480 LAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDAL 526 (1079)
Q Consensus 480 La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L 526 (1079)
|..=|..++++.+.-+|.+++.|+++....|...|.+..++..+-++
T Consensus 42 l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~ 88 (115)
T cd00197 42 IKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKF 88 (115)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHh
Confidence 33334566888889999999999999999999999998887766444
No 293
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.57 E-value=1.3e+03 Score=29.51 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=106.2
Q ss_pred HhCCchHHHHHhhcCCCCCCCCccHHHHHHHHHHHHhcCCC--CChHHHHHHhhccCCCCccchhhhhccCChHHHHHHH
Q 001429 314 CSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--LNIGSVLKDILSTYDLSHGMSSPHMVDGHCNQVHEVL 391 (1079)
Q Consensus 314 v~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L~nlas~s~--~gi~~~L~~lL~~~~~e~~w~lsni~ag~~~qi~~vi 391 (1079)
++.|+|.-++.---+.. +..+++..=++|+.....-. .|+-+.|++|+.+. .|.- +-+.+.+--....
T Consensus 126 iE~d~iq~~~~haiha~----rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~----l~R~--L~a~Ns~VrsnAa 195 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAP----RSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPI----LWRG--LKARNSEVRSNAA 195 (1005)
T ss_pred HhhhHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH----HHHh--hccCchhhhhhHH
Confidence 45677777776544442 34577788888988877664 88888888888752 1211 1122222111223
Q ss_pred HHhhcccccccCccchhhccccchhcccChHHHHHHHHhHHHHHHHHHhccCcHHHHHHHHHHHHHhhcc----CCHHHH
Q 001429 392 KLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYL----SKSDML 467 (1079)
Q Consensus 392 ~li~~LlP~l~~~~~~~~~~~r~~~l~~~p~~~~~f~~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~----~~~~~L 467 (1079)
.+.-+++|....+ .+.|...+.+..=+-.|++++. ..-++||..+...++|+++. ..+..+
T Consensus 196 ~lf~~~fP~~dpd--------------~~~e~mD~i~~kQf~~l~~LL~-d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 196 LLFVEAFPIRDPD--------------LHAEEMDSIIQKQFEELYSLLE-DPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HHHHHhccCCCCC--------------ccHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3446678877664 2345556666666667777764 56799999999999999984 566666
Q ss_pred HHHHhcC-------CchHH-------Hhhhhcc-CChhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001429 468 IELLKSA-------NIPSF-------LAGVFTR-KDHHVLILALEIAEMILQKLSDTFLNSFV 515 (1079)
Q Consensus 468 ~~ll~~~-------~i~s~-------La~iL~~-~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~ 515 (1079)
.++++.. ..++. |..|+.. .-|.++...|-.+..+|.....-.+..|+
T Consensus 261 ~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~v 323 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFV 323 (1005)
T ss_pred HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHH
Confidence 6666431 11111 2223332 33555667777777777665555555444
No 294
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.25 E-value=2.8e+02 Score=38.68 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=90.4
Q ss_pred ccCcHHHHHHhh----cCCCCHHHHHHHHHHHHHhhccCCc-chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001429 146 ADSLSPVLVKLA----RHETNPDIMLLAVRAITYLCDIFPR-SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKIS 220 (1079)
Q Consensus 146 ~~g~Vp~LV~lL----~~~~~~elq~~A~~aLtNIa~~~p~-~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs 220 (1079)
...+.|.++.+. .+. ++.++.-++-...++...... +.+. +|-.|+. ...++...-...|+.+|..|+
T Consensus 429 L~~~f~siL~la~~Ll~S~-e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvt-hi~sg~~~ev~~aL~vL~~L~ 501 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSK-EPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVT-HIGSGNSQEVDAALDVLCELA 501 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHH-HHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHH-HHcCCcHHHHHHHHHHHHHHH
Confidence 345666665543 455 688988888888888877654 2233 3556664 343455545578999999999
Q ss_pred ccCCcchhc-cCcccchhhccccCChHHHHHHHHHHHHhhcCCCCCchhhhhccHHHHHHhhccCCHHHHHHHH
Q 001429 221 RDQPHACLE-GGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVA 293 (1079)
Q Consensus 221 ~d~~~~Il~-~G~L~~LL~lLd~~~~~vqr~A~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~ 293 (1079)
..++..+.. +.-|..+|.|++.++..-.|....+++.++.......-..--++.=.+...|.+.+.+...-..
T Consensus 502 ~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GI 575 (1426)
T PF14631_consen 502 EKNPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGI 575 (1426)
T ss_dssp HH-HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhH
Confidence 888766554 4567789999999998889999999999886543322222234555666778888887765443
No 295
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.22 E-value=1.2e+02 Score=30.31 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=56.6
Q ss_pred hhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCcc--HHHHHHHH
Q 001429 268 SHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQP--IYYGLIGL 345 (1079)
Q Consensus 268 ~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~--i~~~alr~ 345 (1079)
...++++..|..-|.+.++.++-.|+..+-.++.++ .+.....+.+...+..|..++..... ... +...++.+
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc--g~~f~~ev~~~~fl~~l~~l~~~~~~---~~~~~Vk~k~l~l 112 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC--GPRFHREVASKEFLDELVKLIKSKKT---DPETPVKEKILEL 112 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS--HHHHHHHHTSHHHHHHHHHHHHHTTT---HHHSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHhHHHHHHHHHHHHccCCC---CchhHHHHHHHHH
Confidence 345788999999999999999999999999998872 34445566677889999998875421 111 55566655
Q ss_pred HHHHh
Q 001429 346 LVKIS 350 (1079)
Q Consensus 346 L~nla 350 (1079)
|..-+
T Consensus 113 l~~W~ 117 (140)
T PF00790_consen 113 LQEWA 117 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 296
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=24.99 E-value=2e+02 Score=35.15 Aligned_cols=85 Identities=12% Similarity=0.251 Sum_probs=60.0
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccCC------------HHHHHHHHhcCCchHHHhhhhccCChhHHHHHH
Q 001429 429 MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSK------------SDMLIELLKSANIPSFLAGVFTRKDHHVLILAL 496 (1079)
Q Consensus 429 ~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~~------------~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aL 496 (1079)
.+++|.|++.+....+.+++.-+...++-|+..+. .+.++.+.....+..++--||..+-...+..++
T Consensus 61 q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v 140 (475)
T PF04499_consen 61 QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGV 140 (475)
T ss_pred hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHH
Confidence 46888888888766778888777777666666432 456677888888888888888633366667777
Q ss_pred HHHHHHHHhhhHHHHHH
Q 001429 497 EIAEMILQKLSDTFLNS 513 (1079)
Q Consensus 497 q~~e~Ll~k~p~~~~~~ 513 (1079)
.++-.|+.|....|...
T Consensus 141 ~IlieLIRknnsdy~~~ 157 (475)
T PF04499_consen 141 SILIELIRKNNSDYDEQ 157 (475)
T ss_pred HHHHHHHHhcccccchh
Confidence 77776667765445543
No 297
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.73 E-value=5.7e+02 Score=27.18 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcC-CCCCchhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Q 001429 250 VALSTVANICKK-LPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQ 302 (1079)
Q Consensus 250 ~A~~~lsNlc~~-~~~~~~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~ 302 (1079)
-|...+..+... ....-..++..+++.|..-|++.|++|...++.+|..++..
T Consensus 57 lA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 57 LARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 344555555444 33334556777888888999999999999999999999765
No 298
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.96 E-value=3.2e+02 Score=33.98 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+.++.++.++.+. |-.+++..++-|+.+. .+-..++.....|++-.|..-+-+. .+-++.+|..||+++-+..-.
T Consensus 90 ~~~~~h~lRg~esk-dk~VR~r~lqila~~~--d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 90 AGTFYHLLRGTESK-DKKVRKRSLQILALLS--DVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCC
Confidence 35667777788887 8899999999887543 2334455655667777666655555 488999999999999654332
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
.-..++ ..|+.-+..-+..+++. .||-||+.++
T Consensus 166 een~~~-----n~l~~~vqnDPS~EVRr---~allni~vdn 198 (885)
T COG5218 166 EENRIV-----NLLKDIVQNDPSDEVRR---LALLNISVDN 198 (885)
T ss_pred hHHHHH-----HHHHHHHhcCcHHHHHH---HHHHHeeeCC
Confidence 223343 24554233445667776 4567887775
No 299
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.67 E-value=85 Score=37.93 Aligned_cols=58 Identities=9% Similarity=0.155 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCC
Q 001429 101 SDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHE 160 (1079)
Q Consensus 101 ~~~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~ 160 (1079)
..+..++.|++.++.++++.+|..++..|..++.... .-...|.+.+|.-|+.+|-.+
T Consensus 309 KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 309 KLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccC
Confidence 3488999999999999999999999999999987665 223367788899999999765
No 300
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=3.4e+02 Score=34.52 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=70.2
Q ss_pred chhHHHHHHHhccCCChHHHHHHHHHHHHHHhccCCCchhhhhccCcHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCCc
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~lv~~L~s~~d~~~ql~Al~~L~~lLs~~~~~~~~~~~~~g~Vp~LV~lL~~~~~~elq~~A~~aLtNIa~~~p~ 182 (1079)
.+.+..++.++.+. |-.+++..++-|+.++- ++-.++..+-.++...+..-|.+. .|.++.+|+-||+.+-+..-+
T Consensus 84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d--~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSD--ENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHhc--cccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCC
Confidence 45667777777777 88999999998876532 333344444556666655555555 489999999999999743222
Q ss_pred chhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ 223 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~ 223 (1079)
- +..++-.|..-+..-++.+++.. +|.||+.+.
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdn 192 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDN 192 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCc
Confidence 1 12345566642234457888884 566777664
No 301
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=1.8e+02 Score=38.05 Aligned_cols=95 Identities=12% Similarity=-0.025 Sum_probs=70.1
Q ss_pred hhhhhccHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHHHHHhhcCCCCCCCCccHHHHHHHHH
Q 001429 267 PSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLL 346 (1079)
Q Consensus 267 ~~~v~~vlP~L~~LL~~~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~Lv~LL~~~~~~~~~~~i~~~alr~L 346 (1079)
..++++++-.-..+|.+.+..++-.|+-+++....-.+..++.+=.++. -.=+.+++.+... ++.+...|+.+|
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k-----~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCK-----DPLIVQRAFSCI 871 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcC-----chHHHHHHHHHH
Confidence 3456778888888899999999999999999876544334444444443 2456677777766 677888999999
Q ss_pred HHHhcCCC--------CChHHHHHHhhcc
Q 001429 347 VKISSGSI--------LNIGSVLKDILST 367 (1079)
Q Consensus 347 ~nlas~s~--------~gi~~~L~~lL~~ 367 (1079)
-+++..+. ..++|.+.+++..
T Consensus 872 ~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 872 EQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988877 5677777776654
No 302
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.84 E-value=2e+02 Score=28.24 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhccC-CcchhHHHhCCChHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCcchhccCcccchhhccccC
Q 001429 165 IMLLAVRAITYLCDIF-PRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF 243 (1079)
Q Consensus 165 lq~~A~~aLtNIa~~~-p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eqal~aL~nIs~d~~~~Il~~G~L~~LL~lLd~~ 243 (1079)
++...|.++..|+... |+.+. ..++.+++ ++.. ...-.+..+..|.-+..+-.. +-+..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp-----~~l~~l~~-~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~ 63 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWP-----DFLEDLLQ-LLQS-SPQHLELVLRILRILPEEITD-------------FRRSS 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTST-----THHHHHHH-HHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCH
T ss_pred HHHHHHHHHHHHHHHHChhhCc-----hHHHHHHH-Hhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchh
Confidence 5556777888887633 55554 34577775 5554 356666677777777654211 00000
Q ss_pred ChHHHHHH-HHHHHHhhcCCCCCchhhhhccHHHHHHhhccCC----HHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCc
Q 001429 244 STSIQRVA-LSTVANICKKLPSECPSHLMEAVPILSNLLQYED----RQLVESVAICLIKIAEQLSQSSQMLDEVCSHGL 318 (1079)
Q Consensus 244 ~~~vqr~A-~~~lsNlc~~~~~~~~~~v~~vlP~L~~LL~~~D----~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gl 318 (1079)
-...+|.. -..+. .....++..+.++|.... ..++..+..|+...+.- -.+..+++.++
T Consensus 64 ~~~~r~~~l~~~l~-----------~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-----~~~~~i~~~~~ 127 (148)
T PF08389_consen 64 LSQERRRELKDALR-----------SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW-----IPIELIINSNL 127 (148)
T ss_dssp SHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-----S-HHHHHSSSH
T ss_pred hhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-----CCHHHhccHHH
Confidence 11111221 11111 113455777777776544 78899999999888753 34667888899
Q ss_pred hHHHHHhhcCCCCCCCCccHHHHHHHHH
Q 001429 319 INQTTHLLNLNSRTTLSQPIYYGLIGLL 346 (1079)
Q Consensus 319 l~~Lv~LL~~~~~~~~~~~i~~~alr~L 346 (1079)
++.++++|.+. .++..|+.+|
T Consensus 128 l~~~~~~l~~~-------~~~~~A~~cl 148 (148)
T PF08389_consen 128 LNLIFQLLQSP-------ELREAAAECL 148 (148)
T ss_dssp HHHHHHHTTSC-------CCHHHHHHHH
T ss_pred HHHHHHHcCCH-------HHHHHHHHhC
Confidence 99999999643 4466777765
No 303
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=21.23 E-value=1.5e+02 Score=31.57 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=46.8
Q ss_pred ChHHHHHHhhc-----CCCHHHHHHHHHHHHHhhccC--Ccchhc--cCc--ccchhhccccCChHHHHHHHHHHHHhhc
Q 001429 192 AVPALCQRLKA-----IEYLDVAEQCLQALEKISRDQ--PHACLE--GGA--IMAALTYIDFFSTSIQRVALSTVANICK 260 (1079)
Q Consensus 192 aIp~Lv~kLl~-----~~~~dl~Eqal~aL~nIs~d~--~~~Il~--~G~--L~~LL~lLd~~~~~vqr~A~~~lsNlc~ 260 (1079)
++..|+..+.. ....+-.+-....|.||++-. ...+++ .+. |..|+-++.+.+.--.+-++.+|-|||-
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 56777764444 233555677888999999763 223333 223 5666767666644445558999999998
Q ss_pred CCCCC
Q 001429 261 KLPSE 265 (1079)
Q Consensus 261 ~~~~~ 265 (1079)
.....
T Consensus 133 d~~~H 137 (192)
T PF04063_consen 133 DTDSH 137 (192)
T ss_pred cHhHH
Confidence 75433
No 304
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.08 E-value=96 Score=30.01 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=34.1
Q ss_pred HHHHHHHHhhccCCcchhHHHhCCChHHHHHHhhcCCCHHHHHH
Q 001429 168 LAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQ 211 (1079)
Q Consensus 168 ~A~~aLtNIa~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dl~Eq 211 (1079)
++...|..++. .|+.-..+|+.|+++.|+. ||.+++.|++-.
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~-LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLG-LLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHH-HHCCCCcceehc
Confidence 45667777775 5888889999999999996 999999888643
No 305
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.62 E-value=7.8e+02 Score=24.82 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=68.2
Q ss_pred HHhhcCCCCCchhhhhccHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCCCHHHHHHHHhCCchHH-HHHhhcCCCCCC
Q 001429 256 ANICKKLPSECPSHLMEAVPILSNLLQY-EDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQ-TTHLLNLNSRTT 333 (1079)
Q Consensus 256 sNlc~~~~~~~~~~v~~vlP~L~~LL~~-~D~~V~~~A~~als~I~~~~~~~~e~i~~lv~~gll~~-Lv~LL~~~~~~~ 333 (1079)
-.+|.-..... .--++++-.|..-|++ .++.++-.|+..+-.++.++ ......+|.+.+.+.. |+.++.....
T Consensus 23 leicD~In~~~-~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNC--G~~fh~eiask~Fl~e~L~~~i~~~~~-- 97 (141)
T cd03565 23 MEICDIINETE-DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNC--GHRFHVLVAKKDFIKDVLVKLINPKNN-- 97 (141)
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHhhhHHHHHHHcccCC--
Confidence 34555433222 3457889999998885 68999999988888888874 4555667888899997 9999974321
Q ss_pred CCccHHHHHHHHHHHHhcC---CC-CChHHHHHHhhc
Q 001429 334 LSQPIYYGLIGLLVKISSG---SI-LNIGSVLKDILS 366 (1079)
Q Consensus 334 ~~~~i~~~alr~L~nlas~---s~-~gi~~~L~~lL~ 366 (1079)
....+...++.+|..-+.. .+ ...+.-+++.|.
T Consensus 98 ~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 134 (141)
T cd03565 98 PPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEELK 134 (141)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Confidence 1234555666666555433 23 455555555554
No 306
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.41 E-value=2.2e+02 Score=34.71 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHHHHHhhhHHHHHHHHHhCHHHHHHHhcC
Q 001429 487 KDHHVLILALEIAEMILQKLSDTFLNSFVKEGVFFAIDALLT 528 (1079)
Q Consensus 487 ~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~rEGv~~~I~~L~~ 528 (1079)
+.+++.+.||.++|++++++...|..++.+++++++.=++..
T Consensus 50 k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k 91 (470)
T KOG1087|consen 50 KNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPK 91 (470)
T ss_pred CCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 444566789999999999999999999999999999555543
No 307
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=20.14 E-value=1.9e+02 Score=29.70 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=63.7
Q ss_pred cChHHHHHHH-HhHHHHHHHHHhccCcHHHHHHHHHHHHHhhccC-CHHHHHHHHhcCCchHHHhhhhccCChhHHHHHH
Q 001429 419 DRPDLLQNFG-MDILPMLIQVVNSGANIFVCYGCLSVINKLVYLS-KSDMLIELLKSANIPSFLAGVFTRKDHHVLILAL 496 (1079)
Q Consensus 419 ~~p~~~~~f~-~~llp~Li~v~~ss~~~~VR~~~l~ai~~iv~~~-~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aL 496 (1079)
++++.+..|. .+++..++++........|+...+..+.=+++.. ++..+..++.+..+-.++..-+.-.|..++-.=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 4577888888 5899999999998789999999999999999987 4566677777766666666656656666653333
Q ss_pred HHHHHHHHh
Q 001429 497 EIAEMILQK 505 (1079)
Q Consensus 497 q~~e~Ll~k 505 (1079)
.+++.|--|
T Consensus 94 sfLK~lSlk 102 (149)
T PF09758_consen 94 SFLKTLSLK 102 (149)
T ss_pred HHHHHHHhh
Confidence 334444433
Done!