Query 001429
Match_columns 1079
No_of_seqs 332 out of 1381
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 22:16:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001429.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_27-30//hhsearch_pdb/001429hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 1.0 1 1 440.8 40.6 449 2-601 25-499 (529)
2 3ul1_B Importin subunit alpha- 1.0 1 1 400.0 38.6 399 103-601 56-480 (510)
3 4b8j_A Importin subunit alpha- 1.0 1 1 371.2 42.1 427 2-529 25-478 (528)
4 1wa5_B Importin alpha subunit; 1.0 1 1 355.3 43.6 435 2-529 30-492 (530)
5 3ul1_B Importin subunit alpha- 1.0 1 1 290.9 25.8 388 8-462 14-432 (510)
6 3now_A UNC-45 protein, SD10334 1.0 1 1 288.5 24.6 406 103-528 289-760 (810)
7 2jdq_A Importin alpha-1 subuni 1.0 1 1 288.2 38.6 377 105-529 21-425 (450)
8 3nmz_A APC variant protein; pr 1.0 1 1 284.3 22.0 364 95-511 20-457 (458)
9 3tpo_A Importin subunit alpha- 1.0 1 1 277.5 29.7 382 67-500 76-493 (529)
10 3now_A UNC-45 protein, SD10334 1.0 1 1 255.5 27.3 182 162-353 260-452 (810)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=440.83 Aligned_cols=449 Identities=19% Similarity=0.285 Sum_probs=385.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86567765434459776443554677888898742123457899988778987887755657767666432368899999
Q 001429 2 GNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDS 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1079)
+++||||.|..+|+||.||++.++|+|++.. . ++ +. . +..++. .
T Consensus 25 ~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~-------~------~~--~~---~------~~~~~~------------~ 68 (529)
T 3tpo_A 25 TEMRRRRIEVNVELRKAKKDEQMLKRRNVSS-------F------PD--DA---T------SPLQEN------------R 68 (529)
T ss_dssp -------------------CCSCSCCCCCC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------C------CC--CC---C------CHHHHC------------C
T ss_conf 8999987699999989999999985259987-------7------66--54---5------713210------------0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 99870021289999984289901399999982169994899999999999994368874113200495899997404799
Q 001429 82 DDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET 161 (1079)
Q Consensus 82 ~~~~~~~~~l~~~~r~l~~~~~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~~~~ 161 (1079)
+... .....++.++.+++++ |+..|+.|+..++++|+..++++++.++..|+||.||++|...+
T Consensus 69 ~~~~---------------~~~~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~ 132 (529)
T 3tpo_A 69 NNQG---------------TVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 132 (529)
T ss_dssp -CGG---------------GSSCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT
T ss_pred CHHH---------------HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 0013---------------6888999999985699-99999999999999872789844999998889999999876899
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHCCCCCCCHHH
Q ss_conf 989999999999996316995335887189938999986228999999999999989532699---54012472000000
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~~---~~Il~~g~L~~lL~ 238 (1079)
++++|.+|||||+||+.++++.+..|+++|+||.|+ +|+.+++.+++++|+|+|+||+.+++ ..|++.|++++++.
T Consensus 133 ~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 133 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
T ss_conf 899999999999999749999999999888899999-9876999899999999999874468899999987387278999
Q ss_pred CCCCC-----CHHHHHHHHHHHHHHHCCC-CCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 01367-----7579999999999750499-99963555120899998311677889999999999987304999788999
Q 001429 239 YIDFF-----STSIQRVALSTVANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDE 312 (1079)
Q Consensus 239 ~Ld~~-----~~~iqr~A~~~lsNlc~~~-~~~~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ 312 (1079)
++... ...++|+++|+++|+|++. +...+..+.+++|.|+.+|.+.|.+++.+||||+++++++ .++..+.
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~ 288 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEM 288 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS---CHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_conf 8732440376899999999999998741321136999864899999995599688999999999986520---0056789
Q ss_pred HHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCCCC----CCCCHHHHHC
Q ss_conf 983994599998404899998881179999999999862799--------9907999996326998----8530000001
Q 001429 313 VCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDL----SHGMSSPHMV 380 (1079)
Q Consensus 313 ii~~gli~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~--------~gi~~~L~~lL~~~~~----~~~~~lsni~ 380 (1079)
++..|+++.|+++|.+. +..++.+++++|+||+++++ .|+++.|..+|.+.+. +++|+++||+
T Consensus 289 v~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~ 363 (529)
T 3tpo_A 289 VVKKGVVPQLVKLLGAT-----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 363 (529)
T ss_dssp HHTTTCHHHHHHHHTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99636028899886189-----7047788999999997164687788760242789999980998889899999999986
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 48967999999996320566557610010001000002490899999976799999999306838999999999999610
Q 001429 381 DGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVY 460 (1079)
Q Consensus 381 ~~~~~qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~ 460 (1079)
+++.++.+.+++ . +++|.|+.++. +.+++||+++.|+|.|++.
T Consensus 364 ~~~~~~~~~v~~--~----------------------------------g~i~~Lv~lL~-~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 364 AGRQDQIQQVVN--H----------------------------------GLVPFLVGVLS-KADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp TSCHHHHHHHHH--T----------------------------------THHHHHHHHHH-SSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--C----------------------------------CCHHHHHHHHC-CCCHHHHHHHHHHHHHHHC
T ss_conf 163888889996--5----------------------------------83799999856-9999999999999999981
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCHHHHHHHHCCCCCCCCC
Q ss_conf 6999999999850793478865412688569999999999999861-----47998779971789999972299866888
Q 001429 461 LSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKL-----SDTFLNSFVKEGVFFAIDALLTPEKCSQL 535 (1079)
Q Consensus 461 ~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~-----p~~~~~~f~rEGv~~~I~~L~~~~~~~~~ 535 (1079)
.++++++..+++.+.+. .|..+|.+.|..++..+|.+++.+++-. .+.|...|++.|++++|+.|..++
T Consensus 407 ~~~~~~~~~l~~~g~i~-~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~----- 480 (529)
T 3tpo_A 407 GGTVEQIVYLVHCGIIE-PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE----- 480 (529)
T ss_dssp HSCHHHHHHHHHTTCHH-HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCS-----
T ss_pred CCCHHHHHHHHHCCCHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCC-----
T ss_conf 89999999999896899-999986699999999999999999998686267689999999877499999987499-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 988888888999876456743212246766889999875333342012789999999998314987
Q 001429 536 FPAFSGIQLCPSSSQKCAGREVLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNLAKSIITKYFSPE 601 (1079)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~s~~~~~~~~k~~i~~~Ar~l~~~y~~~~ 601 (1079)
...|+..|..|.++||..+
T Consensus 481 -----------------------------------------------n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 481 -----------------------------------------------NESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp -----------------------------------------------SHHHHHHHHHHHHHHC---
T ss_pred -----------------------------------------------CHHHHHHHHHHHHHHCCCC
T ss_conf -----------------------------------------------9999999999999977985
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=400.00 Aligned_cols=399 Identities=19% Similarity=0.278 Sum_probs=356.5
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 01399999982169994899999999999994368874113200495899997404799989999999999996316995
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPR 182 (1079)
Q Consensus 103 ~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~~~~~~eiq~~A~~aLtnI~~~~p~ 182 (1079)
...+++||.+|+++ |+..|+.|+.++|++||...+++++.++..|+||.||++|+..+++++|++|||||+||+.++++
T Consensus 56 ~~~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 56 NWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp SCCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 40099999984599-99999999999999865788962999998888899999877899899999999999999649999
Q ss_pred CHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHCCCCCCCHHHCCCCC-----CHHHHHHHHHH
Q ss_conf 335887189938999986228999999999999989532699---5401247200000001367-----75799999999
Q 001429 183 SSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALTYIDFF-----STSIQRVALST 254 (1079)
Q Consensus 183 ~~~~VV~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~~---~~Il~~g~L~~lL~~Ld~~-----~~~iqr~A~~~ 254 (1079)
.+..|+++|+||.|+ +|+.+++.+++++|+|+|+||+.+++ ..+++.|++++++.++... ...++|+++|+
T Consensus 135 ~~~~vv~~GaIp~Lv-~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999788799999-9886999899999999999997188999999998698179999997346104459999999999
Q ss_pred HHHHHCCC-CCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 99750499-99963555120899998311677889999999999987304999788999983994599998404899998
Q 001429 255 VANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTT 333 (1079)
Q Consensus 255 lsNlc~~~-~~~~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ii~~gli~~Li~LL~~~~~~~ 333 (1079)
++|+|++. +...+..+.+++|.|+.+|.+.|.+++..||||+++++++ .++..+.+++.|+++.|+++|.+.
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~---- 286 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGAT---- 286 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHTCS----
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC---HHHHHHHHHHCCCCHHHHHHHCCC----
T ss_conf 9987531110257999976999999998168799999999999998602---156678998636512555661388----
Q ss_pred CCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCCCC----CCCCHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 881179999999999862799--------9907999996326998----8530000001489679999999963205665
Q 001429 334 LSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDL----SHGMSSPHMVDGHCNQVHEVLKLLNELLPTS 401 (1079)
Q Consensus 334 ~~~~~~~~alr~L~~las~s~--------~gi~~~L~~lL~~~~~----~~~~~lsni~~~~~~qi~~ii~li~~LlP~l 401 (1079)
+..++.+++++|+||+++++ .|+++.|..+|.+.+. +++|+++||++++.++.+.+++ .
T Consensus 287 -~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~--~------ 357 (510)
T 3ul1_B 287 -ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN--H------ 357 (510)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--T------
T ss_pred -CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH--C------
T ss_conf -7134268899998862377888888761241278888724998899999999999997084989999885--3------
Q ss_pred CCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 57610010001000002490899999976799999999306838999999999999610699999999985079347886
Q 001429 402 VGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLA 481 (1079)
Q Consensus 402 ~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La 481 (1079)
+++|.|++++. +.+++||+++.|+|.|++..++.+++..+++.+.+. .|.
T Consensus 358 ----------------------------g~i~~Lv~lL~-~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~-~L~ 407 (510)
T 3ul1_B 358 ----------------------------GLVPFLVGVLS-KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE-PLM 407 (510)
T ss_dssp ----------------------------THHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH-HHH
T ss_pred ----------------------------CCHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH-HHH
T ss_conf ----------------------------87889999973-898899999999999987069999999999797899-999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5412688569999999999999861-----47998779971789999972299866888988888888999876456743
Q 001429 482 GVFTRKDHHVLILALEIAEMILQKL-----SDTFLNSFVKEGVFFAIDALLTPEKCSQLFPAFSGIQLCPSSSQKCAGRE 556 (1079)
Q Consensus 482 ~iL~~~d~~~l~~aLq~~e~Ll~k~-----p~~~~~~f~rEGv~~~I~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1079)
.+|.+.|..++..+|.+++.+++.. .+.|...|++.|++++|+.|..++
T Consensus 408 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-------------------------- 461 (510)
T 3ul1_B 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-------------------------- 461 (510)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCS--------------------------
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCC--------------------------
T ss_conf 986699999999999999999998574266589999999868599999987599--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 212246766889999875333342012789999999998314987
Q 001429 557 VLRCLCYAFDTGLSSSASEKQSCKLDKDSVHNLAKSIITKYFSPE 601 (1079)
Q Consensus 557 ~~~~~~~~~d~~~~s~~s~~~~~~~~k~~i~~~Ar~l~~~y~~~~ 601 (1079)
...|+..|..|.++||..+
T Consensus 462 --------------------------n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 462 --------------------------NESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp --------------------------SHHHHHHHHHHHHHHCC--
T ss_pred --------------------------CHHHHHHHHHHHHHHCCCC
T ss_conf --------------------------8999999999999977985
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=371.17 Aligned_cols=427 Identities=18% Similarity=0.255 Sum_probs=365.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86567765434459776443554677888898742123457899988778987887755657767666432368899999
Q 001429 2 GNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDS 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1079)
+++||||.|..+||||.||+++..|+|++... .+ . .+ ++ . .+. .
T Consensus 25 ~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~-------------~~--~--~~-----------~~-~-----~~~--~ 68 (528)
T 4b8j_A 25 EEGRRRREDNMVEIRKSRREESLLKKRREGLQ-------------AQ--A--PV-----------PA-S-----AAT--G 68 (528)
T ss_dssp --CCCCC-----------------CCCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------CC--C--CC-----------CC-C-----CCC--C
T ss_conf 88888299999999999878899987556777-------------66--5--44-----------43-2-----121--0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 99870021289999984289901399999982169994899999999999994368874113200495899997404799
Q 001429 82 DDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET 161 (1079)
Q Consensus 82 ~~~~~~~~~l~~~~r~l~~~~~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~~~~ 161 (1079)
. . .....++.|+..|+++ |+..|+.|++.|+++++...+++...+...|++|.|+.+|.+++
T Consensus 69 ~--~---------------~~~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 130 (528)
T 4b8j_A 69 V--D---------------KKLESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED 130 (528)
T ss_dssp -----------------------CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT
T ss_pred H--H---------------HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 0--0---------------0677899999987699-99999999999999814777962999998887999999847899
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHCCCCCCCHHH
Q ss_conf 989999999999996316995335887189938999986228999999999999989532699---54012472000000
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~~---~~Il~~g~L~~lL~ 238 (1079)
+++++..|+|+|+||+.++++....+++.|+||.|+ .++..++.+++++|+|+|++|+.+.+ ..+++.|++++++.
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~ 209 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 209 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
T ss_conf 789999999999999679988799999688678999-8856999999999999999995899166899997785999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 01-36775799999999997504999996355512089999831167788999999999998730499978899998399
Q 001429 239 YI-DFFSTSIQRVALSTVANICKKLPSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHG 317 (1079)
Q Consensus 239 ~L-d~~~~~iqr~A~~~lsNlc~~~~~~~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ii~~g 317 (1079)
++ +..+..+++.|+|+++|+|.+.+......+.+++|.|+.+|.+.|..++..|||+|++++.+ .++..+.+++.|
T Consensus 210 lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g 286 (528)
T 4b8j_A 210 QLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAG 286 (528)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCC
T ss_conf 97348988999999999999975899986999998999999997799878999999999998738---879999999748
Q ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCC-C----CCCCCHHHHHCCCCH
Q ss_conf 4599998404899998881179999999999862799--------99079999963269-9----885300000014896
Q 001429 318 LINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTY-D----LSHGMSSPHMVDGHC 384 (1079)
Q Consensus 318 li~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~--------~gi~~~L~~lL~~~-~----~~~~~~lsni~~~~~ 384 (1079)
+++.|+.+|.+. +..+..+++++|++|+.+++ .|+++.|..+|.+. . .+++|+++|++.++.
T Consensus 287 ~v~~Lv~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~ 361 (528)
T 4b8j_A 287 VCPRLVELLLHP-----SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361 (528)
T ss_dssp CHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 799999997188-----755779999999999729889999999740278999997589968899999999999977999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 79999999963205665576100100010000024908999999767999999993068389999999999996106999
Q 001429 385 NQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS 464 (1079)
Q Consensus 385 ~qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~~~~~ 464 (1079)
++++.+++ . +++|.|++++.+ .+..+|+.++|+|.+++..+++
T Consensus 362 ~~~~~~~~--~----------------------------------~~i~~L~~lL~~-~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 362 DQIQAVIN--A----------------------------------GIIGPLVNLLQT-AEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HHHHHHHH--T----------------------------------TCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHH--C----------------------------------CCHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999997--7----------------------------------879999999814-8888999999999999748999
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCHHHHHHHHCCC
Q ss_conf 99999985079347886541268856999999999999986147----------998779971789999972299
Q 001429 465 DMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSD----------TFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 465 ~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~----------~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
+....+++...+ ..|..+|...|..+...++.++..|++..+. .|...|...|++..|+.|..+
T Consensus 405 ~~~~~l~~~~~i-~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~ 478 (528)
T 4b8j_A 405 DQIKYLVSEGCI-KPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH 478 (528)
T ss_dssp HHHHHHHHTTCH-HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999988888-99999874897899999999999999987875431555420999999987869999998769
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=355.28 Aligned_cols=435 Identities=19% Similarity=0.214 Sum_probs=362.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86567765434459776443554677888898742123457899988778987887755657767666432368899999
Q 001429 2 GNRGQKRMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDS 81 (1079)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1079)
+++||||.|..+|+||.||++.+.|+|++... +...++ .+ +.++ + +.
T Consensus 30 ~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~---~~~~~~----~~--~~~~---------~-----------~~---- 76 (530)
T 1wa5_B 30 DELRRRRDTQQVELRKAKRDEALAKRRNFIPP---TDGADS----DE--EDES---------S-----------VS---- 76 (530)
T ss_dssp -CCCCCTTSSCCCCSCCCCCSCCSCCCCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCC----CC--CHHH---------H-----------HH----
T ss_conf 78999699999999999878799874267765---443456----77--5222---------2-----------23----
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 99870021289999984289901399999982169994899999999999994368874113200495899997404799
Q 001429 82 DDAEPRHRGLRELQRRRSSSDHGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHET 161 (1079)
Q Consensus 82 ~~~~~~~~~l~~~~r~l~~~~~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~~~~ 161 (1079)
+.+. .+ ......++.++..|+++ |+..|..|++.|+++++...++++..+...|++|.|+.+|.+++
T Consensus 77 --------~~~~-~~---~~~~~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~ 143 (530)
T 1wa5_B 77 --------ADQQ-FY---SQLQQELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143 (530)
T ss_dssp ----------------------CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS
T ss_pred --------HHHH-HH---HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHCCCC
T ss_conf --------4433-21---21577899999987599-99999999999999847899965999988888999999847999
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHCCCCCCCHHH
Q ss_conf 989999999999996316995335887189938999986228999999999999989532699---54012472000000
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~~---~~Il~~g~L~~lL~ 238 (1079)
+++++..|+|+|++|+.+.++....+++.|+||.|+. ++..++.+++++|+|+|++|+.+.+ ..+++.|+++.++.
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ 222 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 222 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-HHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHH
T ss_conf 7799999999999996799898999997797899999-986998899999999999984899523189997485999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC-CCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 013677579999999999750499-9996355512089999831167788999999999998730499978899998399
Q 001429 239 YIDFFSTSIQRVALSTVANICKKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHG 317 (1079)
Q Consensus 239 ~Ld~~~~~iqr~A~~~lsNlc~~~-~~~~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ii~~g 317 (1079)
++...+..+++.|+|+++|+|++. +......+.+++|.|..+|.+.|..++..|||+|++++.+ .++..+.+++.|
T Consensus 223 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~ 299 (530)
T 1wa5_B 223 LFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---PQEAIQAVIDVR 299 (530)
T ss_dssp GGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCC
T ss_conf 96669888999999999998679999985999973999999997699889999999999998679---889999999458
Q ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCCC----CCCCCHHHHHCCCCHH
Q ss_conf 4599998404899998881179999999999862799--------990799999632699----8853000000148967
Q 001429 318 LINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYD----LSHGMSSPHMVDGHCN 385 (1079)
Q Consensus 318 li~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~--------~gi~~~L~~lL~~~~----~~~~~~lsni~~~~~~ 385 (1079)
+++.|+.+|.+. +..+...++++|++++.+++ .|+++.|..+|.... .+++|+++|++.++.+
T Consensus 300 ~v~~Lv~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 374 (530)
T 1wa5_B 300 IPKRLVELLSHE-----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374 (530)
T ss_dssp CHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 389999997799-----755579999999999729999999999746399999997699788999999999999759999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH-
Q ss_conf 9999999963205665576100100010000024908999999767999999993068389999999999996106999-
Q 001429 386 QVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKS- 464 (1079)
Q Consensus 386 qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~~~~~- 464 (1079)
+++.+++ . +++|.|++++. ..+..||+.++|+|.+++..+++
T Consensus 375 ~~~~~~~--~----------------------------------~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~ 417 (530)
T 1wa5_B 375 QIQAVID--A----------------------------------NLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQR 417 (530)
T ss_dssp HHHHHHH--T----------------------------------TCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHH--C----------------------------------CCHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999998--8----------------------------------88999999985-698889999999999998169981
Q ss_pred -HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCHHHHHHHHCCC
Q ss_conf -99999985079347886541268856999999999999986147----------998779971789999972299
Q 001429 465 -DMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSD----------TFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 465 -~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~----------~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
+....++....+ ..|..++...|..+...++.++..|+...+. .|...|...|++..++.|..+
T Consensus 418 ~~~~~~l~~~~~l-~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~ 492 (530)
T 1wa5_B 418 PDIIRYLVSQGCI-KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 492 (530)
T ss_dssp THHHHHHHHTTCH-HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC
T ss_pred HHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9999999988889-99999980897899999999999999964666520354330999999985829999998769
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=290.93 Aligned_cols=388 Identities=13% Similarity=0.128 Sum_probs=309.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 65434459776443554677888898742123457899988778987887755657767666432368899999998700
Q 001429 8 RMEMAVDLPDDKRACSSLDFRPSTSNSSVQTHLNSTNSTPETHHNDMDTSSSASASSRSEEEPEKDAGYGSCDSDDAEPR 87 (1079)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1079)
|....+|+++.+++.+.++.++..+.... .. ..|... ..+..+--+++++.... |+|.+.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~----~~~~~~~~i~~~v~~l~---s~d~~~q 74 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDD----------LA--MADIGS----NQGTVNWSVEDIVKGIN---SNNLESQ 74 (510)
T ss_dssp -------------------------------------------------------CCSSCCHHHHHHHHT---SSCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCC----------CC--HHHHCC----CCCHHHHHHHHHHHHHC---CCCHHHH
T ss_conf 77652877898898644577654678654----------11--343034----44214400999999845---9999999
Q ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHC
Q ss_conf 212899999842899---------01399999982169994899999999999994368874113200495899997404
Q 001429 88 HRGLRELQRRRSSSD---------HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLAR 158 (1079)
Q Consensus 88 ~~~l~~~~r~l~~~~---------~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~ 158 (1079)
..+++.++|.|+... .|.++.||..|+..+++.+|++|+|+|+++.+. +.+....+...|+||.||.+|+
T Consensus 75 ~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-~~e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 75 LQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999999865788962999998888899999877899899999999999999649-9999999997887999999886
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHCCC-CC--CHHCC
Q ss_conf 79998999999999999631699533588718993899998622899-----999999999998953269-95--40124
Q 001429 159 HETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIEY-----LDVAEQCLQALEKISRDQ-PH--ACLEG 230 (1079)
Q Consensus 159 ~~~~~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaIp~Lv~kLl~~~~-----~dLaEqal~aL~nIs~d~-~~--~Il~~ 230 (1079)
++ +.+++..|+|||+||+..++++...+++.|++++|+. ++.... ..+.+.++|+|.+++++. +. .....
T Consensus 154 s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~-lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 231 (510)
T 3ul1_B 154 SP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 231 (510)
T ss_dssp CS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-HTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99-9899999999999997188999999998698179999-997346104459999999999998753111025799997
Q ss_pred CCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC-HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 720000000136775799999999997504999996-3555120899998311677889999999999987304999788
Q 001429 231 GAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC-PSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQM 309 (1079)
Q Consensus 231 g~L~~lL~~Ld~~~~~iqr~A~~~lsNlc~~~~~~~-~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~ 309 (1079)
|+++.++.++...+..++..|+|+++|++.+.+... .....+++|.|+.+|.+.+..++..+++++++|+.+ +++.
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~---~~~~ 308 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG---TDEQ 308 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS---CHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHH
T ss_conf 6999999998168799999999999998602156678998636512555661388713426889999886237---7888
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCCC----CCCCCHHH
Q ss_conf 999983994599998404899998881179999999999862799--------990799999632699----88530000
Q 001429 310 LDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSVLKDILSTYD----LSHGMSSP 377 (1079)
Q Consensus 310 ~e~ii~~gli~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~--------~gi~~~L~~lL~~~~----~~~~~~ls 377 (1079)
.+.+++.|+++.|+.||.+. +..++..++++|+||+.+++ .|+++.|..+|.... ++++|++.
T Consensus 309 ~~~i~~~g~l~~L~~LL~~~-----~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 309 TQKVIDAGALAVFPSLLTNP-----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383 (510)
T ss_dssp HHHHHHTTGGGGCC-CTTCS-----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88876124127888872499-----8899999999999997084989999885387889999973898899999999999
Q ss_pred HHC-CCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 001-4896799999999632056655761001000100000249089999997679999999930683899999999999
Q 001429 378 HMV-DGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVIN 456 (1079)
Q Consensus 378 ni~-~~~~~qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~ 456 (1079)
|++ .++.+|+..+++ . +.++.|++++. +.+..|+..++++|.
T Consensus 384 Nl~~~~~~~~~~~L~~--~----------------------------------g~i~~L~~LL~-~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 384 NYTSGGTVEQIVYLVH--C----------------------------------GIIEPLMNLLS-AKDTKIIQVILDAIS 426 (510)
T ss_dssp HHHHHCCHHHHHHHHH--T----------------------------------TCHHHHHHGGG-CSCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHH--C----------------------------------CCHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 9870699999999997--9----------------------------------78999999866-999999999999999
Q ss_pred HHHCCC
Q ss_conf 961069
Q 001429 457 KLVYLS 462 (1079)
Q Consensus 457 ~iv~~~ 462 (1079)
||+..+
T Consensus 427 nil~~~ 432 (510)
T 3ul1_B 427 NIFQAA 432 (510)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999985
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=288.46 Aligned_cols=406 Identities=14% Similarity=0.093 Sum_probs=208.0
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-
Q ss_conf 0139999998216999489999999999999436887411320049589999740479998999999999999631699-
Q 001429 103 HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFP- 181 (1079)
Q Consensus 103 ~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~~~vp~LV~LL~~~~~~eiq~~A~~aLtnI~~~~p- 181 (1079)
.+.++.++..+.++ ++..|..|++.+.... ++..+.+.+...|+ |.|+.+++++ +..++..|+++|+++.....
T Consensus 289 ~G~v~~li~Ll~s~-~~~~q~~A~~al~~aa--~~~~~R~~I~~~gv-~~L~~Ll~s~-~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 289 EGILQMILAMATTD-DELQQRVACECLIAAS--SKKDKAKALCEQGV-DILKRLYHSK-NDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHT--TSHHHHHTTHHHHH-HHHHHHTTCS-CHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHC--CCCHHHHHHHHCCC-HHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCC
T ss_conf 02699999986799-7889999999999981--89099999998696-7999987489-788999999999974414466
Q ss_pred CCHHHHHHCCC----HHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCC--CC-HHCCCCCCCHHHCCCCCCHHHHHHHH
Q ss_conf 53358871899----389999862289--99999999999989532699--54-01247200000001367757999999
Q 001429 182 RSSGLLVRHDA----VPALCQRLKAIE--YLDVAEQCLQALEKISRDQP--HA-CLEGGAIMAALTYIDFFSTSIQRVAL 252 (1079)
Q Consensus 182 ~~~~~VV~~Ga----Ip~Lv~kLl~~~--~~dLaEqal~aL~nIs~d~~--~~-Il~~g~L~~lL~~Ld~~~~~iqr~A~ 252 (1079)
+.....+..|+ ++.|+ +++.++ +.+++++|+|+|.+++.+.. .. +.+.|++++|+.++...+..+|..|+
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~-~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al 442 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACR-RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVV 442 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHH-HHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 86535320044999999999-98657899878999999999998379278999998206499999996799818999999
Q ss_pred HHHHHHHCCCCCC---------------------------------CHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9999750499999---------------------------------6355512089999831167788999999999998
Q 001429 253 STVANICKKLPSE---------------------------------CPSHLMEAVPILSNLLQYEDRQLVESVAICLIKI 299 (1079)
Q Consensus 253 ~~lsNlc~~~~~~---------------------------------~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I 299 (1079)
|+++|++.+.+.+ ......+++|.|+.+|.+++..++++|+|+|++|
T Consensus 443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999857960212128999999876424765564331777799999999885999999998599989999999999998
Q ss_pred HHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHCCCC
Q ss_conf 7304999788999983994599998404899998881179999999999862799----------990799999632699
Q 001429 300 AEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI----------LNIGSVLKDILSTYD 369 (1079)
Q Consensus 300 ~~~~~~~~e~~e~ii~~gli~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~----------~gi~~~L~~lL~~~~ 369 (1079)
+. +++..+.++++|+++.|+.+|.++ ....+..|+++|++|+.+.+ .++++.|..+|.+..
T Consensus 523 A~----d~~~r~~Vv~~Gaip~Lv~LL~s~-----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~ 593 (810)
T 3now_A 523 CG----LKELRGKVVQEGGVKALLRMALEG-----TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC 593 (810)
T ss_dssp HT----SHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS
T ss_pred CC----CHHHHHHHHHCCCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHCHHHHHHHHHCCCC
T ss_conf 58----988999999878999999997059-----888999999999999658985665310023157999999867898
Q ss_pred C-----CCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCH------HCCCCHHHHHHHH--HHHHHHHH
Q ss_conf 8-----853000000148967999999996320566557610010001000------0024908999999--76799999
Q 001429 370 L-----SHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQS------FLVDRPDLLQNFG--MDILPMLI 436 (1079)
Q Consensus 370 ~-----~~~~~lsni~~~~~~qi~~ii~li~~LlP~l~~~~~t~~~~~r~~------~l~~~p~~~~~~~--~~llp~Li 436 (1079)
. +++|+++|++.++.+..+.+++ ++.+|++...-......-++. .+..+++...+|+ .+.+|.|+
T Consensus 594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv 671 (810)
T 3now_A 594 TALENFESLMALTNLASMNESVRQRIIK--EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf 2788999999999984699899999998--68889999998289999999999999999679599999986168089999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99930683899999999999961069999999998507934788654126885699999999999998614799877997
Q 001429 437 QVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAEMILQKLSDTFLNSFVK 516 (1079)
Q Consensus 437 ~iy~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e~Ll~k~p~~~~~~f~r 516 (1079)
.+.. +.+..+|+.+.|+|.++..+ ++.+.+.+++....-..|..+|.+.|..+...++.++.-|..-. +.....+.+
T Consensus 672 ~LL~-s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-~e~~~~l~e 748 (810)
T 3now_A 672 LLCE-DEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-EEIAKKLFE 748 (810)
T ss_dssp HGGG-CSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHT
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_conf 9846-99989999999999998679-98999999987488989999877998899999999999998699-999999998
Q ss_pred HCHHHHHHHHCC
Q ss_conf 178999997229
Q 001429 517 EGVFFAIDALLT 528 (1079)
Q Consensus 517 EGv~~~I~~L~~ 528 (1079)
.|++..+..|..
T Consensus 749 ~G~i~~L~~LL~ 760 (810)
T 3now_A 749 TDIMELLSGLGQ 760 (810)
T ss_dssp STHHHHHTTSCC
T ss_pred CCCHHHHHHHHH
T ss_conf 978899999982
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=1.00 E-value=1 Score=288.20 Aligned_cols=377 Identities=17% Similarity=0.224 Sum_probs=324.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3999999821699948999999999999943688741132004-958999974047999899999999999963169953
Q 001429 105 KLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSLSSMMAD-SLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRS 183 (1079)
Q Consensus 105 ~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l~~i~~~-~~vp~LV~LL~~~~~~eiq~~A~~aLtnI~~~~p~~ 183 (1079)
.++.++..|+++ |+..+..|+..|+++++...++....+... +++|.|+++|+++++++++..|+|+|++++.+.++.
T Consensus 21 ~l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 699999986399-9999999999999985689998599998869928999998777998789999999999996698899
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHCCCCCCCHHHCCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 35887189938999986228999999999999989532699---540124720000000136-77579999999999750
Q 001429 184 SGLLVRHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQP---HACLEGGAIMAALTYIDF-FSTSIQRVALSTVANIC 259 (1079)
Q Consensus 184 ~~~VV~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~~---~~Il~~g~L~~lL~~Ld~-~~~~iqr~A~~~lsNlc 259 (1079)
...+++.|++|.|+ +++..++.+++++|+|+|++|+.+.+ ..+++.|+++.++.++.. .+..+++.|+|+++|+|
T Consensus 100 ~~~~~~~~~i~~L~-~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 100 TRIVIQAGAVPIFI-ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHTTHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999689889999-98869988999999999999806988999999977879999998667997889999999999984
Q ss_pred CCC-CCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCH
Q ss_conf 499-9996355512089999831167788999999999998730499978899998399459999840489999888117
Q 001429 260 KKL-PSECPSHLMEAVPILSNLLQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPI 338 (1079)
Q Consensus 260 ~~~-~~~~~~~i~~~lP~L~~lL~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ii~~gli~~Li~LL~~~~~~~~~~~~ 338 (1079)
++. +......+.+++|.|..+|.+.|..++..++|++++++.. .++..+.++..|+++.|+.+|.+. +..+
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v 250 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLMHN-----DYKV 250 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---SHHHHHHHHHTTTHHHHHHHTTCS-----CHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCC-----CHHH
T ss_conf 78999987999999999999987658789999999999998779---907779999738289999987799-----6537
Q ss_pred HHHHHHHHHHHHCCCC--------CCHHHHHHHHHCCCCC----CCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999999999862799--------9907999996326998----853000000148967999999996320566557610
Q 001429 339 YYGLIGLLVKISSGSI--------LNIGSVLKDILSTYDL----SHGMSSPHMVDGHCNQVHEVLKLLNELLPTSVGDQC 406 (1079)
Q Consensus 339 ~~~alr~L~~las~s~--------~gi~~~L~~lL~~~~~----~~~~~lsni~~~~~~qi~~ii~li~~LlP~l~~~~~ 406 (1079)
...++++|++++.+++ .|+++.|..+|...+. .++|+++|++.++.++++.+++ .
T Consensus 251 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~----------- 317 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--A----------- 317 (450)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--T-----------
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH--C-----------
T ss_conf 999999998886098599999998765999999980898879999999999998499999999998--8-----------
Q ss_pred HHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 01000100000249089999997679999999930683899999999999961069999999998507934788654126
Q 001429 407 VQLVLDKQSFLVDRPDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTR 486 (1079)
Q Consensus 407 t~~~~~r~~~l~~~p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~ 486 (1079)
+++|.|++.+.+ .+..||+.++|++.+++...+++....++....+ ..|..++..
T Consensus 318 -----------------------~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i-~~L~~ll~~ 372 (450)
T 2jdq_A 318 -----------------------NIFPALISILQT-AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI-KPLCDLLTV 372 (450)
T ss_dssp -----------------------THHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH-HHHHHGGGS
T ss_pred -----------------------CCHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH-HHHHHHHCC
T ss_conf -----------------------889999999845-8888999999999999849999999999988779-999998647
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCHHHHHHHHCCC
Q ss_conf 8856999999999999986147----------998779971789999972299
Q 001429 487 KDHHVLILALEIAEMILQKLSD----------TFLNSFVKEGVFFAIDALLTP 529 (1079)
Q Consensus 487 ~d~~~l~~aLq~~e~Ll~k~p~----------~~~~~f~rEGv~~~I~~L~~~ 529 (1079)
.|..+...++.++..++...+. .|...|...|++..+..|..+
T Consensus 373 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 425 (450)
T 2jdq_A 373 MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH 425 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 77899999999999999856666521542101999999986869999998769
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=1.00 E-value=1 Score=284.32 Aligned_cols=364 Identities=14% Similarity=0.123 Sum_probs=290.4
Q ss_pred HHHHCCCC---CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCH-HHHHCCCCHHHHHHHHCCCCC--------
Q ss_conf 99842899---013999999821699948999999999999943688741-132004958999974047999--------
Q 001429 95 QRRRSSSD---HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAMEDSL-SSMMADSLSPVLVKLARHETN-------- 162 (1079)
Q Consensus 95 ~r~l~~~~---~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~e~~l-~~i~~~~~vp~LV~LL~~~~~-------- 162 (1079)
-|++++.. -..+..|+.++.+. |+.. ..+++|+++.++.. ..+...|++|.||++|+..+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~ 92 (458)
T 3nmz_A 20 HMRLTSHLGTKVEMVYSLLSMLGTH-DKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92 (458)
T ss_dssp --------------------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---C
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC-CHHH------HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7775201173299999999985579-9899------99999998738917999998888899999983335332344666
Q ss_pred ---HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCH----------HHHHHHHHCCCC--HH-----HHH-------HHHHH
Q ss_conf ---8999999999999631699533588718993----------899998622899--99-----999-------99999
Q 001429 163 ---PDIMLLAVRAITYLCDIFPRSSGLLVRHDAV----------PALCQRLKAIEY--LD-----VAE-------QCLQA 215 (1079)
Q Consensus 163 ---~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaI----------p~Lv~kLl~~~~--~d-----LaE-------qal~a 215 (1079)
++++++|+|||+||+.+.|+.+..+.+.|++ +.++ +++...+ .| +.| ||+|+
T Consensus 93 ~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~a 171 (458)
T 3nmz_A 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW-EWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 171 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTSSSSCCCSCC--CCCTTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 577999999999999988069503489999999999987664417999-9997021353324677642024778999999
Q ss_pred HHHHHCCC--CCCHHCCCCCCCHHHCCCC-----------CCHHHHHHHHHHHHHHHCCCCCCCHHH--HHCCHHHHHHH
Q ss_conf 98953269--9540124720000000136-----------775799999999997504999996355--51208999983
Q 001429 216 LEKISRDQ--PHACLEGGAIMAALTYIDF-----------FSTSIQRVALSTVANICKKLPSECPSH--LMEAVPILSNL 280 (1079)
Q Consensus 216 L~nIs~d~--~~~Il~~g~L~~lL~~Ld~-----------~~~~iqr~A~~~lsNlc~~~~~~~~~~--i~~~lP~L~~l 280 (1079)
|+||+.+. ...|++.|++++|+.+|.. ....+|+.|+|++.|+|.+.+.....+ ..+++|.|+.+
T Consensus 172 L~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L 251 (458)
T 3nmz_A 172 LMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251 (458)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 99965998999999988988999999865300123356789999999999999998679962478999817929999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC------
Q ss_conf 11677889999999999987304999788999983994599998404899998881179999999999862799------
Q 001429 281 LQYEDRQLVESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI------ 354 (1079)
Q Consensus 281 L~~~D~~V~~~A~~als~I~~~~~~~~e~~e~ii~~gli~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~------ 354 (1079)
|.+.|.+++++|||+|++|+.+ .+++..+.+++.|+|+.|+++|...+ +..++.+++++|.||+.+++
T Consensus 252 L~s~~~~v~~~A~~aL~nLs~~--~~~~~k~~I~~~GaI~~LV~lLl~s~----~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 252 LKSESEDLQQVIASVLRNLSWR--ADVNSKKTLREVGSVKALMECALEVK----KESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHTTHHHHHHHHHTTCC----SHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCHHHHHHHHHCCC----CHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9489999999999999998647--98899999998699899999985589----99999999999999804887789999
Q ss_pred ---CCHHHHHHHHHCCCCC--------CCCCHHHHHCC---CCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCC
Q ss_conf ---9907999996326998--------85300000014---896799999999632056655761001000100000249
Q 001429 355 ---LNIGSVLKDILSTYDL--------SHGMSSPHMVD---GHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDR 420 (1079)
Q Consensus 355 ---~gi~~~L~~lL~~~~~--------~~~~~lsni~~---~~~~qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~ 420 (1079)
.|+++.|..+|..... +++|++.|+.. +..++.+.+++ +
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~--~------------------------- 378 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE--N------------------------- 378 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--T-------------------------
T ss_pred HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH--C-------------------------
T ss_conf 9862849999999627897341999999999999998623699899999997--0-------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 08999999767999999993068389999999999996106999999999850793478865412688569999999999
Q 001429 421 PDLLQNFGMDILPMLIQVVNSGANIFVCYGCLSVINKLVYLSKSDMLIELLKSANIPSFLAGVFTRKDHHVLILALEIAE 500 (1079)
Q Consensus 421 p~~~~~~~~~llp~Li~iy~ss~~~~VR~~~l~ai~~iv~~~~~~~L~~ll~~~~i~s~La~iL~~~d~~~l~~aLq~~e 500 (1079)
+.+|.|++++. +.+..+++.++|+|.|+... +++....+++.+.+ ..|..+|.+++..+...|..++.
T Consensus 379 ---------G~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I-~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 379 ---------NCLQTLLQHLK-SHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAV-SMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp ---------THHHHHHHHSS-CSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHH-HHHHTTTTCSSHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHC-CCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ---------64999999980-79857899999999999729-99999999988899-99999980899999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99986147998
Q 001429 501 MILQKLSDTFL 511 (1079)
Q Consensus 501 ~Ll~k~p~~~~ 511 (1079)
.|....|..|+
T Consensus 447 nL~~~~p~ky~ 457 (458)
T 3nmz_A 447 NLMANRPAKYK 457 (458)
T ss_dssp HHHTCCSCC--
T ss_pred HHHCCCHHHHC
T ss_conf 99828875306
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=277.51 Aligned_cols=382 Identities=14% Similarity=0.160 Sum_probs=304.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC---------CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 666432368899999998700212899999842899---------01399999982169994899999999999994368
Q 001429 67 EEEPEKDAGYGSCDSDDAEPRHRGLRELQRRRSSSD---------HGKLRSILACLSEDTDPSRHITSLTELCEVLSFAM 137 (1079)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~l~~~~---------~~~l~~Ll~~L~s~~d~~~ql~Al~~L~~lLs~~~ 137 (1079)
..++++..... |+|.+.+..+++.+++.|+... .|.++.||..|+..+++.+|.+|+|+|+++.+..
T Consensus 76 ~~l~~lv~~l~---s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~- 151 (529)
T 3tpo_A 76 WSVEDIVKGIN---SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT- 151 (529)
T ss_dssp CCHHHHHHHHT---SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-
T ss_conf 89999999856---99999999999999998727898449999988899999998768998999999999999997499-
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCC-----CHHHHHHH
Q ss_conf 8741132004958999974047999899999999999963169953358871899389999862289-----99999999
Q 001429 138 EDSLSSMMADSLSPVLVKLARHETNPDIMLLAVRAITYLCDIFPRSSGLLVRHDAVPALCQRLKAIE-----YLDVAEQC 212 (1079)
Q Consensus 138 e~~l~~i~~~~~vp~LV~LL~~~~~~eiq~~A~~aLtnI~~~~p~~~~~VV~~GaIp~Lv~kLl~~~-----~~dLaEqa 212 (1079)
......+...|+||.|+.+|.++ +.+++..|+|||+||+..++++...|++.|++++|+. ++... ...+.+.+
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-TTCSSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH-HHHCCCHHHHHHHHHHHH
T ss_conf 99999999888899999987699-9899999999999874468899999987387278999-873244037689999999
Q ss_pred HHHHHHHHCCC-CC--CHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC-HHHHHCCHHHHHHHHCCCCHHH
Q ss_conf 99998953269-95--40124720000000136775799999999997504999996-3555120899998311677889
Q 001429 213 LQALEKISRDQ-PH--ACLEGGAIMAALTYIDFFSTSIQRVALSTVANICKKLPSEC-PSHLMEAVPILSNLLQYEDRQL 288 (1079)
Q Consensus 213 l~aL~nIs~d~-~~--~Il~~g~L~~lL~~Ld~~~~~iqr~A~~~lsNlc~~~~~~~-~~~i~~~lP~L~~lL~~~D~~V 288 (1079)
+|+|.+++++. +. .....|+++.|+.++...+..++..|+|+++|++.+.+... .....+++|.|+.+|.+.+..+
T Consensus 230 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
T ss_conf 99999987413211369998648999999955996889999999999865200056789996360288998861897047
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------CCHHHH
Q ss_conf 999999999987304999788999983994599998404899998881179999999999862799--------990799
Q 001429 289 VESVAICLIKIAEQLSQSSQMLDEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGSI--------LNIGSV 360 (1079)
Q Consensus 289 ~~~A~~als~I~~~~~~~~e~~e~ii~~gli~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s~--------~gi~~~ 360 (1079)
+..|++++++|+.+ +++..+.+++.|+++.|+.||.+. +..++..++++|+||+.+++ .|+++.
T Consensus 310 ~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~-----~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~ 381 (529)
T 3tpo_A 310 VTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNP-----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 381 (529)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCS-----SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHCCCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
T ss_conf 78899999999716---468778876024278999998099-----8889899999999986163888889996583799
Q ss_pred HHHHHCCCC----CCCCCHHHHHC-CCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999632699----88530000001-4896799999999632056655761001000100000249089999997679999
Q 001429 361 LKDILSTYD----LSHGMSSPHMV-DGHCNQVHEVLKLLNELLPTSVGDQCVQLVLDKQSFLVDRPDLLQNFGMDILPML 435 (1079)
Q Consensus 361 L~~lL~~~~----~~~~~~lsni~-~~~~~qi~~ii~li~~LlP~l~~~~~t~~~~~r~~~l~~~p~~~~~~~~~llp~L 435 (1079)
|..+|.... .+++|++.|++ .++.+|+..+++ . +++|.|
T Consensus 382 Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~--~----------------------------------g~i~~L 425 (529)
T 3tpo_A 382 LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH--C----------------------------------GIIEPL 425 (529)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--T----------------------------------TCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH--C----------------------------------CCHHHH
T ss_conf 9998569999999999999999981899999999998--9----------------------------------689999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCC----CHHHHHHHHHC-CCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999930683899999999999961069----99999999850-793478865412688569999999999
Q 001429 436 IQVVNSGANIFVCYGCLSVINKLVYLS----KSDMLIELLKS-ANIPSFLAGVFTRKDHHVLILALEIAE 500 (1079)
Q Consensus 436 i~iy~ss~~~~VR~~~l~ai~~iv~~~----~~~~L~~ll~~-~~i~s~La~iL~~~d~~~l~~aLq~~e 500 (1079)
++++. +.+..++..++++|.+|+..+ ..+.+..++.. +.+ ..|-.+..+++..+-.-|+.|++
T Consensus 426 ~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl-~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 426 MNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL-DKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH-HHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99866-9999999999999999999868626768999999987749-99999874999999999999999
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=255.51 Aligned_cols=182 Identities=13% Similarity=0.055 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHH-HCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--CCCHHCCCCCCCHHH
Q ss_conf 989999999999996316995335887-18993899998622899999999999998953269--954012472000000
Q 001429 162 NPDIMLLAVRAITYLCDIFPRSSGLLV-RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQ--PHACLEGGAIMAALT 238 (1079)
Q Consensus 162 ~~eiq~~A~~aLtnI~~~~p~~~~~VV-~~GaIp~Lv~kLl~~~~~dLaEqal~aL~nIs~d~--~~~Il~~g~L~~lL~ 238 (1079)
+.+-...|+|++++|+.+.++.+..++ ..|++|.|+ +|+.+++..++++|+|+|++++.+. ...|++.|+ +.++.
T Consensus 260 ~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li-~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~ 337 (810)
T 3now_A 260 DMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL-AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKR 337 (810)
T ss_dssp CHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH-HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHH
T ss_conf 7376899999999996598988899983202699999-986799788999999999998189099999998696-79999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC---CC-CCHH--HHHCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 013677579999999999750499---99-9635--5512089999831167--78899999999999873049997889
Q 001429 239 YIDFFSTSIQRVALSTVANICKKL---PS-ECPS--HLMEAVPILSNLLQYE--DRQLVESVAICLIKIAEQLSQSSQML 310 (1079)
Q Consensus 239 ~Ld~~~~~iqr~A~~~lsNlc~~~---~~-~~~~--~i~~~lP~L~~lL~~~--D~~V~~~A~~als~I~~~~~~~~e~~ 310 (1079)
++...+..++..|+|++.++.... +. ..+. .+.+++|.|+.+|.++ |.+++++|+|+|+|++.+ .+.+.
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~---~~vk~ 414 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD---AECKE 414 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS---HHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC---CHHHH
T ss_conf 874897889999999999744144668653532004499999999998657899878999999999998379---27899
Q ss_pred HHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9998399459999840489999888117999999999986279
Q 001429 311 DEVCSHGLINQTTHLLNLNSRTTLSQPIYYGLIGLLVKISSGS 353 (1079)
Q Consensus 311 e~ii~~gli~~Li~LL~~~~~~~~~~~~~~~alr~L~~las~s 353 (1079)
+.+.+.|+|++|+++|.+. +..++..++++|+||+++.
T Consensus 415 ~lv~d~g~Ip~LV~LL~s~-----d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 415 KLIEDKASIHALMDLARGG-----NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHTTCS
T ss_pred HHHHCCCHHHHHHHHHCCC-----CHHHHHHHHHHHHHHCCCC
T ss_conf 9998206499999996799-----8189999999999985796
Done!