Query 001430
Match_columns 1079
No_of_seqs 408 out of 2014
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 00:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 3E-319 5E-324 2828.1 84.9 1077 1-1079 1-1079(1079)
2 PLN02400 cellulose synthase 100.0 9E-318 2E-322 2816.6 82.0 1056 3-1079 22-1085(1085)
3 PLN02436 cellulose synthase A 100.0 3E-314 7E-319 2775.0 83.9 1059 4-1079 23-1093(1094)
4 PLN02915 cellulose synthase A 100.0 9E-301 2E-305 2662.0 80.2 1015 1-1079 1-1044(1044)
5 PLN02189 cellulose synthase 100.0 1E-296 3E-301 2625.4 80.9 1010 6-1079 23-1040(1040)
6 PLN02195 cellulose synthase A 100.0 2E-284 5E-289 2508.7 78.6 971 14-1079 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 4E-245 9E-250 2180.7 74.4 929 8-1066 115-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 5E-218 1E-222 1900.7 50.0 719 351-1073 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 7E-199 2E-203 1741.5 63.1 726 253-1058 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-190 3E-195 1679.9 65.9 707 252-1056 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 1.3E-67 2.8E-72 643.4 48.3 495 272-1036 57-568 (713)
12 PRK11498 bcsA cellulose syntha 100.0 3.3E-67 7.1E-72 641.1 45.7 473 273-1031 188-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 6.7E-45 1.4E-49 320.7 4.6 80 9-89 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 1.1E-35 2.4E-40 360.0 47.2 362 270-875 40-420 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1E-33 2.2E-38 307.7 22.2 182 516-827 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 1.5E-30 3.3E-35 297.4 28.2 233 348-831 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 6.1E-28 1.3E-32 280.8 34.4 232 346-832 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 3E-27 6.4E-32 274.9 31.0 287 345-882 45-340 (439)
19 PRK11204 N-glycosyltransferase 100.0 8.8E-27 1.9E-31 267.6 33.6 236 345-832 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 1.5E-24 3.3E-29 255.6 34.2 265 347-857 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 8E-25 1.7E-29 228.0 20.2 229 349-829 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 6E-24 1.3E-28 259.5 28.9 198 532-861 132-364 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 3.1E-24 6.6E-29 226.0 21.4 229 349-825 1-232 (232)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 1.1E-22 2.3E-27 213.9 22.2 173 518-831 58-234 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 7.6E-23 1.7E-27 217.6 21.2 231 349-831 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 8.1E-23 1.7E-27 213.3 8.6 224 349-824 1-228 (228)
27 TIGR03472 HpnI hopanoid biosyn 99.8 2.3E-19 5E-24 204.7 26.1 235 346-825 38-272 (373)
28 PRK15489 nfrB bacteriophage N4 99.8 1.4E-18 3.1E-23 210.8 30.3 171 532-830 140-342 (703)
29 cd04190 Chitin_synth_C C-termi 99.8 1.7E-20 3.8E-25 201.3 11.4 52 774-827 190-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 5.1E-19 1.1E-23 183.2 17.8 226 353-824 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 1.6E-18 3.6E-23 178.9 16.9 124 532-824 72-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 1.5E-17 3.2E-22 174.3 18.8 58 532-598 63-120 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.7 7.3E-17 1.6E-21 171.3 20.1 127 345-597 25-151 (251)
34 TIGR03469 HonB hopene-associat 99.7 3.2E-16 6.9E-21 179.8 25.9 133 345-591 36-169 (384)
35 COG2943 MdoH Membrane glycosyl 99.7 1.2E-14 2.5E-19 166.8 38.0 211 517-873 213-437 (736)
36 cd02525 Succinoglycan_BP_ExoA 99.7 5.7E-15 1.2E-19 155.0 20.2 74 724-831 160-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.6 1.2E-15 2.7E-20 156.5 10.6 138 553-825 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 1.5E-13 3.2E-18 142.2 13.5 115 517-638 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 1E-12 2.2E-17 134.3 12.1 61 532-598 62-123 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 9.1E-12 2E-16 127.5 16.3 63 518-594 60-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.3 2.7E-11 5.9E-16 124.1 17.2 65 518-596 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 4.5E-11 9.8E-16 123.9 10.8 154 531-823 15-175 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 4.4E-10 9.5E-15 113.4 16.2 55 533-596 62-117 (202)
44 PF03142 Chitin_synth_2: Chiti 99.1 8.1E-09 1.8E-13 123.0 25.8 54 775-830 324-379 (527)
45 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 2.7E-09 5.8E-14 118.0 19.5 110 353-579 2-112 (299)
46 cd04196 GT_2_like_d Subfamily 99.1 1.4E-09 3E-14 111.8 15.8 64 518-595 56-120 (214)
47 cd02522 GT_2_like_a GT_2_like_ 99.1 4.8E-09 1E-13 109.0 17.6 41 534-579 60-100 (221)
48 cd04186 GT_2_like_c Subfamily 99.0 4.5E-09 9.7E-14 103.0 15.4 50 533-591 61-111 (166)
49 cd06420 GT2_Chondriotin_Pol_N 99.0 6.9E-09 1.5E-13 104.6 16.9 41 533-579 66-106 (182)
50 PF14570 zf-RING_4: RING/Ubox 99.0 1.7E-10 3.6E-15 95.6 2.9 48 20-70 1-48 (48)
51 cd06423 CESA_like CESA_like is 99.0 6.9E-09 1.5E-13 100.5 13.4 63 518-594 55-118 (180)
52 PLN02726 dolichyl-phosphate be 98.9 2.8E-08 6.2E-13 106.6 17.7 60 518-591 70-129 (243)
53 cd02526 GT2_RfbF_like RfbF is 98.9 9.8E-09 2.1E-13 108.0 13.6 49 518-573 49-97 (237)
54 cd06913 beta3GnTL1_like Beta 1 98.9 2.4E-08 5.1E-13 104.8 16.0 41 353-398 1-41 (219)
55 cd06442 DPM1_like DPM1_like re 98.9 4.9E-08 1.1E-12 101.6 17.7 60 518-591 55-114 (224)
56 PF00535 Glycos_transf_2: Glyc 98.9 2.2E-09 4.8E-14 104.2 6.8 111 517-639 54-166 (169)
57 cd04185 GT_2_like_b Subfamily 98.9 2.8E-08 6.1E-13 102.4 14.7 65 518-594 53-117 (202)
58 cd04188 DPG_synthase DPG_synth 98.6 4.4E-07 9.6E-12 94.7 14.0 61 519-593 60-120 (211)
59 PRK10073 putative glycosyl tra 98.6 1E-06 2.2E-11 100.0 16.5 110 347-579 4-113 (328)
60 cd04179 DPM_DPG-synthase_like 98.6 4.7E-07 1E-11 91.3 11.8 65 518-596 56-120 (185)
61 TIGR01556 rhamnosyltran L-rham 98.5 1.9E-06 4.2E-11 94.4 16.5 68 517-594 46-113 (281)
62 PRK10018 putative glycosyl tra 98.5 3.1E-06 6.8E-11 94.3 17.5 53 516-578 60-112 (279)
63 PRK10063 putative glycosyl tra 98.4 9.4E-06 2E-10 88.7 17.0 47 349-399 1-48 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.4 7.6E-06 1.7E-10 77.4 14.2 51 532-591 63-114 (156)
65 cd04187 DPM1_like_bac Bacteria 98.3 5E-06 1.1E-10 84.4 12.6 105 517-639 56-160 (181)
66 KOG2571 Chitin synthase/hyalur 98.3 7.8E-06 1.7E-10 101.4 16.1 50 775-826 549-598 (862)
67 PF10111 Glyco_tranf_2_2: Glyc 98.3 1.7E-05 3.7E-10 88.0 16.7 61 533-599 75-135 (281)
68 COG1216 Predicted glycosyltran 98.3 2.6E-05 5.6E-10 87.4 17.1 69 516-596 56-126 (305)
69 PTZ00260 dolichyl-phosphate be 98.1 4.6E-05 1E-09 86.9 16.5 41 533-578 149-189 (333)
70 PRK13915 putative glucosyl-3-p 98.0 4.2E-05 9.1E-10 86.4 11.9 50 533-590 102-152 (306)
71 PRK10714 undecaprenyl phosphat 97.3 0.0015 3.3E-08 74.4 12.1 40 533-577 77-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.3 0.0058 1.2E-07 70.1 15.7 158 531-823 155-314 (431)
73 cd02511 Beta4Glucosyltransfera 96.9 0.0076 1.6E-07 64.6 11.8 41 534-579 59-99 (229)
74 COG0463 WcaA Glycosyltransfera 96.8 0.0099 2.2E-07 57.0 10.7 44 348-397 2-45 (291)
75 COG5175 MOT2 Transcriptional r 96.7 0.00077 1.7E-08 75.5 2.2 48 19-69 16-63 (480)
76 TIGR00570 cdk7 CDK-activating 95.8 0.0096 2.1E-07 67.5 4.8 61 16-78 2-62 (309)
77 PF14446 Prok-RING_1: Prokaryo 94.9 0.016 3.4E-07 50.0 2.1 46 16-69 4-51 (54)
78 cd02514 GT13_GLCNAC-TI GT13_GL 94.9 0.32 7E-06 56.2 13.3 41 352-396 3-43 (334)
79 PF02364 Glucan_synthase: 1,3- 91.0 2 4.4E-05 54.6 12.8 71 775-851 409-480 (817)
80 cd00162 RING RING-finger (Real 89.0 0.38 8.3E-06 37.5 2.9 44 19-68 1-44 (45)
81 PF05290 Baculo_IE-1: Baculovi 88.0 0.34 7.3E-06 48.9 2.4 52 18-73 81-135 (140)
82 KOG2978 Dolichol-phosphate man 87.5 2.9 6.4E-05 44.9 9.0 53 516-578 63-115 (238)
83 smart00504 Ubox Modified RING 84.9 0.98 2.1E-05 38.8 3.4 43 19-69 3-45 (63)
84 PLN03208 E3 ubiquitin-protein 78.4 2.7 5.9E-05 45.3 4.5 64 1-71 1-80 (193)
85 PRK14559 putative protein seri 77.3 1.1 2.3E-05 56.2 1.3 32 39-71 18-53 (645)
86 PHA02929 N1R/p28-like protein; 76.2 3.1 6.7E-05 46.2 4.3 55 15-70 172-227 (238)
87 PHA02825 LAP/PHD finger-like p 76.0 2.7 5.8E-05 43.9 3.5 51 16-72 7-61 (162)
88 PHA02862 5L protein; Provision 75.4 1.8 3.9E-05 44.5 2.1 49 17-71 2-54 (156)
89 KOG2977 Glycosyltransferase [G 75.0 14 0.0003 42.2 8.9 51 350-401 68-121 (323)
90 PF13639 zf-RING_2: Ring finge 73.1 2 4.3E-05 34.9 1.4 43 19-66 2-44 (44)
91 PF14447 Prok-RING_4: Prokaryo 70.1 1.9 4.1E-05 37.6 0.7 47 16-72 6-52 (55)
92 smart00659 RPOLCX RNA polymera 66.7 3.3 7.1E-05 34.5 1.4 27 18-46 3-29 (44)
93 PF03604 DNA_RNApol_7kD: DNA d 66.4 4.2 9.1E-05 31.8 1.9 26 19-46 2-27 (32)
94 smart00184 RING Ring finger. E 66.3 5.3 0.00012 29.8 2.5 39 20-65 1-39 (39)
95 PF13712 Glyco_tranf_2_5: Glyc 65.5 22 0.00047 38.8 7.9 49 532-588 40-89 (217)
96 COG4858 Uncharacterized membra 65.3 33 0.00071 37.1 8.7 60 981-1040 99-161 (226)
97 KOG2068 MOT2 transcription fac 63.1 5.7 0.00012 45.8 2.9 52 17-72 249-300 (327)
98 KOG0823 Predicted E3 ubiquitin 62.6 4.7 0.0001 44.4 2.1 44 18-69 48-94 (230)
99 KOG3800 Predicted E3 ubiquitin 62.5 5.5 0.00012 45.2 2.6 53 18-72 1-53 (300)
100 PF03966 Trm112p: Trm112p-like 62.4 1.3 2.9E-05 39.6 -1.8 25 48-72 42-66 (68)
101 KOG2932 E3 ubiquitin ligase in 60.9 5 0.00011 45.8 1.9 46 30-75 84-139 (389)
102 KOG0006 E3 ubiquitin-protein l 60.0 7.2 0.00016 44.6 3.0 66 12-78 310-416 (446)
103 PF13923 zf-C3HC4_2: Zinc fing 59.5 7 0.00015 31.0 2.1 39 20-65 1-39 (39)
104 PF00097 zf-C3HC4: Zinc finger 58.2 6.8 0.00015 31.0 1.8 40 20-65 1-41 (41)
105 PRK00420 hypothetical protein; 57.6 4.3 9.4E-05 40.3 0.7 29 37-71 24-52 (112)
106 KOG3737 Predicted polypeptide 57.3 35 0.00077 40.5 7.9 47 344-393 150-196 (603)
107 PRK15103 paraquat-inducible me 55.1 9.6 0.00021 45.7 3.1 30 34-72 219-248 (419)
108 PF02318 FYVE_2: FYVE-type zin 53.5 1.7 3.6E-05 43.1 -2.9 47 16-65 53-100 (118)
109 PF13920 zf-C3HC4_3: Zinc fing 53.1 9.9 0.00021 31.7 2.1 46 18-71 3-49 (50)
110 PHA02926 zinc finger-like prot 52.3 16 0.00035 40.3 4.0 62 14-75 167-235 (242)
111 PF14471 DUF4428: Domain of un 51.5 8.4 0.00018 33.1 1.4 28 19-52 1-28 (51)
112 smart00249 PHD PHD zinc finger 50.6 7.5 0.00016 30.7 0.9 43 19-65 1-47 (47)
113 smart00291 ZnF_ZZ Zinc-binding 49.3 13 0.00027 30.7 2.1 37 17-58 4-41 (44)
114 PF07282 OrfB_Zn_ribbon: Putat 49.1 11 0.00024 33.4 1.8 33 16-49 27-59 (69)
115 TIGR00155 pqiA_fam integral me 49.0 11 0.00023 45.0 2.3 30 35-72 214-243 (403)
116 PRK12495 hypothetical protein; 47.2 9.9 0.00022 41.7 1.5 29 36-71 42-70 (226)
117 PRK04023 DNA polymerase II lar 46.9 14 0.00029 48.3 2.8 45 15-70 624-674 (1121)
118 COG5114 Histone acetyltransfer 46.5 6.2 0.00014 45.1 -0.2 36 19-58 7-43 (432)
119 KOG2068 MOT2 transcription fac 43.2 9.4 0.0002 44.1 0.6 31 43-73 1-33 (327)
120 COG4818 Predicted membrane pro 42.6 2.2E+02 0.0048 27.9 9.3 26 928-953 5-30 (105)
121 PF11077 DUF2616: Protein of u 42.5 8.7 0.00019 40.8 0.2 35 20-59 55-104 (173)
122 TIGR00599 rad18 DNA repair pro 41.8 21 0.00045 42.7 3.1 45 18-70 27-71 (397)
123 PRK00398 rpoP DNA-directed RNA 41.8 15 0.00032 30.4 1.4 27 19-46 5-31 (46)
124 KOG3736 Polypeptide N-acetylga 41.6 22 0.00047 44.4 3.3 49 345-396 138-186 (578)
125 KOG0916 1,3-beta-glucan syntha 40.8 2.1E+02 0.0046 39.3 11.8 68 775-851 1173-1244(1679)
126 PRK07220 DNA topoisomerase I; 40.4 12 0.00026 47.9 1.0 48 18-67 590-643 (740)
127 PRK14503 mannosyl-3-phosphogly 40.0 63 0.0014 38.2 6.5 40 531-573 142-181 (393)
128 COG0551 TopA Zn-finger domain 39.6 16 0.00035 37.0 1.5 50 14-67 14-68 (140)
129 KOG0457 Histone acetyltransfer 38.0 12 0.00027 44.5 0.5 55 18-79 15-72 (438)
130 cd00350 rubredoxin_like Rubred 37.9 9.5 0.00021 29.7 -0.3 18 53-70 11-28 (33)
131 PRK12380 hydrogenase nickel in 37.8 8.9 0.00019 37.9 -0.6 25 37-68 71-95 (113)
132 cd02249 ZZ Zinc finger, ZZ typ 37.3 24 0.00052 29.3 1.9 30 19-53 2-32 (46)
133 PF15050 SCIMP: SCIMP protein 36.4 31 0.00066 34.8 2.8 41 918-959 2-47 (133)
134 cd02335 ZZ_ADA2 Zinc finger, Z 36.2 26 0.00057 29.6 2.0 30 19-52 2-32 (49)
135 PF06906 DUF1272: Protein of u 36.1 36 0.00078 30.1 2.8 48 18-71 6-53 (57)
136 COG0068 HypF Hydrogenase matur 34.9 26 0.00057 44.4 2.6 62 14-75 98-191 (750)
137 TIGR02443 conserved hypothetic 34.5 21 0.00045 31.8 1.2 31 15-45 7-40 (59)
138 cd00730 rubredoxin Rubredoxin; 34.3 10 0.00023 32.5 -0.6 7 61-67 36-42 (50)
139 PF09484 Cas_TM1802: CRISPR-as 34.1 21 0.00047 44.5 1.7 40 15-54 196-251 (593)
140 PF14634 zf-RING_5: zinc-RING 33.8 36 0.00079 27.8 2.5 43 20-67 2-44 (44)
141 COG1996 RPC10 DNA-directed RNA 33.8 19 0.00042 30.9 0.9 29 17-46 6-34 (49)
142 PRK11827 hypothetical protein; 33.6 25 0.00054 31.4 1.6 37 45-81 12-48 (60)
143 PF11238 DUF3039: Protein of u 33.6 13 0.00029 32.8 -0.1 12 60-71 45-56 (58)
144 PF07649 C1_3: C1-like domain; 33.2 21 0.00046 27.0 0.9 28 19-50 2-29 (30)
145 TIGR02460 osmo_MPGsynth mannos 33.1 94 0.002 36.7 6.4 40 531-573 141-180 (381)
146 COG4739 Uncharacterized protei 32.5 24 0.00052 36.7 1.5 46 26-71 77-122 (182)
147 KOG1941 Acetylcholine receptor 31.8 15 0.00033 43.2 -0.1 62 17-81 365-432 (518)
148 PF00628 PHD: PHD-finger; Int 31.0 30 0.00065 28.7 1.6 45 19-67 1-50 (51)
149 PRK11595 DNA utilization prote 30.4 31 0.00067 37.8 2.0 39 17-68 5-43 (227)
150 PF03884 DUF329: Domain of unk 30.4 34 0.00074 30.3 1.9 27 56-82 15-47 (57)
151 PRK07219 DNA topoisomerase I; 30.3 25 0.00053 45.8 1.4 53 17-72 688-746 (822)
152 PRK14973 DNA topoisomerase I; 29.6 30 0.00065 45.6 2.1 48 18-68 589-644 (936)
153 KOG0311 Predicted E3 ubiquitin 29.6 14 0.00031 43.0 -0.7 45 19-69 45-89 (381)
154 cd02336 ZZ_RSC8 Zinc finger, Z 28.9 34 0.00073 28.8 1.5 36 19-59 2-38 (45)
155 PF07851 TMPIT: TMPIT-like pro 28.8 7.2E+02 0.016 29.4 12.6 19 909-927 172-190 (330)
156 PF11781 RRN7: RNA polymerase 28.7 28 0.0006 27.9 1.0 27 16-44 5-33 (36)
157 TIGR00143 hypF [NiFe] hydrogen 28.6 35 0.00075 43.8 2.3 58 14-72 65-153 (711)
158 PF13896 Glyco_transf_49: Glyc 28.3 66 0.0014 37.2 4.3 40 549-589 126-165 (317)
159 TIGR00155 pqiA_fam integral me 28.0 35 0.00076 40.8 2.1 34 35-72 12-46 (403)
160 KOG3507 DNA-directed RNA polym 28.0 30 0.00065 30.8 1.1 29 16-46 19-47 (62)
161 COG4391 Uncharacterized protei 27.8 23 0.0005 31.7 0.4 17 55-71 44-60 (62)
162 PF13240 zinc_ribbon_2: zinc-r 27.6 15 0.00033 26.6 -0.6 13 56-68 10-22 (23)
163 TIGR00595 priA primosomal prot 27.6 28 0.0006 42.8 1.1 52 30-81 206-262 (505)
164 cd00899 b4GalT Beta-4-Galactos 27.2 48 0.001 36.6 2.8 80 720-829 111-200 (219)
165 TIGR01562 FdhE formate dehydro 26.9 47 0.001 38.5 2.7 44 16-68 183-233 (305)
166 PRK00564 hypA hydrogenase nick 26.8 20 0.00044 35.6 -0.1 28 37-71 72-100 (117)
167 PF13248 zf-ribbon_3: zinc-rib 26.7 16 0.00035 27.0 -0.7 14 55-68 12-25 (26)
168 KOG2857 Predicted MYND Zn-fing 26.7 33 0.00071 35.5 1.3 45 17-73 5-50 (157)
169 KOG3533 Inositol 1,4,5-trispho 26.5 9.6E+02 0.021 33.5 13.9 69 385-460 1779-1856(2706)
170 PRK03681 hypA hydrogenase nick 26.3 18 0.0004 35.8 -0.5 26 37-69 71-97 (114)
171 PRK06319 DNA topoisomerase I/S 26.2 34 0.00073 44.8 1.6 57 15-74 590-660 (860)
172 PRK14873 primosome assembly pr 25.8 42 0.00091 42.7 2.3 11 59-69 422-432 (665)
173 COG4707 Uncharacterized protei 25.5 24 0.00052 34.2 0.1 44 453-507 20-70 (107)
174 KOG2177 Predicted E3 ubiquitin 25.2 37 0.00079 36.4 1.4 43 16-66 12-54 (386)
175 PRK14890 putative Zn-ribbon RN 24.9 83 0.0018 28.1 3.2 50 16-67 6-56 (59)
176 PF13719 zinc_ribbon_5: zinc-r 24.7 31 0.00067 27.6 0.6 11 61-71 4-14 (37)
177 PF08274 PhnA_Zn_Ribbon: PhnA 24.3 26 0.00055 27.2 0.0 24 19-44 4-27 (30)
178 TIGR02556 cas_TM1802 CRISPR-as 24.2 47 0.001 41.4 2.3 41 17-58 170-222 (555)
179 PRK12438 hypothetical protein; 24.1 1.5E+03 0.033 30.7 15.5 46 1012-1057 259-304 (991)
180 PF13717 zinc_ribbon_4: zinc-r 24.0 33 0.00071 27.4 0.6 11 61-71 4-14 (36)
181 PTZ00293 thymidine kinase; Pro 23.9 33 0.00071 37.7 0.7 35 18-52 138-177 (211)
182 TIGR00100 hypA hydrogenase nic 23.8 25 0.00055 34.8 -0.1 28 37-71 71-98 (115)
183 smart00744 RINGv The RING-vari 23.3 94 0.002 26.4 3.2 45 19-66 1-49 (49)
184 TIGR01206 lysW lysine biosynth 23.2 49 0.0011 29.0 1.5 12 19-30 4-15 (54)
185 KOG1609 Protein involved in mR 23.1 62 0.0014 36.4 2.8 58 17-75 78-139 (323)
186 cd03031 GRX_GRX_like Glutaredo 23.1 31 0.00068 35.7 0.4 43 16-67 98-141 (147)
187 PF14319 Zn_Tnp_IS91: Transpos 22.9 42 0.0009 33.2 1.2 34 31-71 37-72 (111)
188 PF06570 DUF1129: Protein of u 22.5 4.8E+02 0.01 28.2 9.3 25 978-1002 81-105 (206)
189 PRK15103 paraquat-inducible me 22.4 39 0.00085 40.7 1.1 33 37-72 11-43 (419)
190 PRK14714 DNA polymerase II lar 22.3 41 0.0009 45.2 1.3 48 18-72 668-722 (1337)
191 PRK08359 transcription factor; 22.1 28 0.00061 37.2 -0.2 30 18-55 7-42 (176)
192 PRK06393 rpoE DNA-directed RNA 22.0 43 0.00093 30.4 1.0 23 35-68 4-26 (64)
193 PF12773 DZR: Double zinc ribb 21.9 59 0.0013 27.0 1.7 12 17-28 12-23 (50)
194 KOG2824 Glutaredoxin-related p 21.9 49 0.0011 37.7 1.6 22 14-43 226-247 (281)
195 PF09526 DUF2387: Probable met 21.6 48 0.001 30.5 1.2 31 15-45 6-39 (71)
196 COG1499 NMD3 NMD protein affec 21.4 51 0.0011 38.9 1.7 50 14-79 3-60 (355)
197 cd02340 ZZ_NBR1_like Zinc fing 21.3 67 0.0015 26.6 1.9 29 19-52 2-31 (43)
198 PRK03824 hypA hydrogenase nick 21.0 33 0.00072 35.0 0.1 12 57-68 105-116 (135)
199 PF01155 HypA: Hydrogenase exp 20.6 15 0.00033 36.2 -2.3 29 37-72 71-99 (113)
200 PF07754 DUF1610: Domain of un 20.6 74 0.0016 23.6 1.8 24 20-44 1-24 (24)
201 COG1198 PriA Primosomal protei 20.6 45 0.00099 42.8 1.2 44 20-75 438-491 (730)
202 PF04641 Rtf2: Rtf2 RING-finge 20.3 69 0.0015 36.0 2.4 49 17-71 113-162 (260)
203 PF03452 Anp1: Anp1; InterPro 20.2 1.1E+03 0.024 27.1 11.8 40 535-575 128-167 (269)
204 COG3357 Predicted transcriptio 20.2 34 0.00074 32.9 -0.0 10 60-69 77-86 (97)
205 PRK14502 bifunctional mannosyl 20.2 2E+02 0.0043 37.0 6.5 40 531-573 146-185 (694)
206 COG0551 TopA Zn-finger domain 20.0 33 0.00072 34.7 -0.2 52 15-70 58-112 (140)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=3.2e-319 Score=2828.11 Aligned_cols=1077 Identities=92% Similarity=1.494 Sum_probs=999.2
Q ss_pred CCCCCCCCCccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccC
Q 001430 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (1079)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~g 80 (1079)
||++|+.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcCcCCCCCCcccCCccccCCCCCCCcccc
Q 001430 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (1079)
Q Consensus 81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1079)
|||||||+||+||||++..+++.+.++++|+|+||+|+||++.|.++..++++.+.+++|+||+||.+++|+++++++|+
T Consensus 81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (1079)
T PLN02638 81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL 160 (1079)
T ss_pred cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence 95555558999999998654556668889999999999999998888788877555688999999988999997776766
Q ss_pred ccCCCCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCC
Q 001430 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS 239 (1079)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (1079)
.+++|.+ .||||||+|+.+.+.+.|.|||+||+++|||||++||||||+||+||+||+.++.++...++++|+ ++++.
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 6666654 689999999766678899999999999999999999999999999999887766665444565544 33221
Q ss_pred CCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 001430 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 319 (1079)
Q Consensus 240 ~~~~~~~~~~~~~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 319 (1079)
++.+++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001430 320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 320 ~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 399 (1079)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 001430 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479 (1079)
Q Consensus 400 ~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~ 479 (1079)
|||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecC
Q 001430 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
Q Consensus 480 m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDc 559 (1079)
|+||++|||+++||||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+||||||+||||||||||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001430 560 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 560 Dh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
|||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCC-cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHH
Q 001430 640 GYEPPLKPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
Q Consensus 640 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
|++||...+..... +++|||++ +++.++.+.+...+++..++.+.+.+++++++++++.++...+++++.++++..++
T Consensus 640 G~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPG-FLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCcccccccccc-cccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99998754322222 22345555 33322221111111112233445567788888888887766777888899999999
Q ss_pred HhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCC
Q 001430 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
Q Consensus 719 ~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p 798 (1079)
++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P 798 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 001430 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLT 878 (1079)
Q Consensus 799 ~~~af~G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~ 878 (1079)
++++|.|+||+|+.+++.||+|||+|++||+++++||+++|++++|+|+|||+|+++++||++++++++|+++|++||++
T Consensus 799 ~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~ 878 (1079)
T PLN02638 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLT 878 (1079)
T ss_pred CchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999999999999999999999999999988778999999999999999999999999999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCC
Q 001430 879 NKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
Q Consensus 879 G~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpK 958 (1079)
|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|+++|+++||++++++|+|++++++|.||+|
T Consensus 879 G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK 958 (1079)
T PLN02638 879 GKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
T ss_pred CCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccc
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 001430 959 ASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
Q Consensus 959 g~~~d~~~~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~~~~ 1038 (1079)
..+.++.++++|.|+||++++|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+
T Consensus 959 ~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~ 1038 (1079)
T PLN02638 959 ASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
T ss_pred cccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 98766678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001430 1039 PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1039 P~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
||||++||++|+++||||||+|+||+++++||++++|||+|
T Consensus 1039 P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1039 PTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred CeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=8.8e-318 Score=2816.61 Aligned_cols=1056 Identities=74% Similarity=1.288 Sum_probs=977.8
Q ss_pred CCCCCCCccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCC
Q 001430 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (1079)
Q Consensus 3 ~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ 82 (1079)
..+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 22 ~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD- 100 (1085)
T PLN02400 22 HDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD- 100 (1085)
T ss_pred ccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-
Confidence 3466888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCC-CCCCCcCcCCCCCCcccCCccccCCCCCCCccccc
Q 001430 83 EEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLS 161 (1079)
Q Consensus 83 e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1079)
|||||+||+||||+|..+++.+.++++ |++.|.+ +++|++ +++|+||+||.++||+++++++|+.
T Consensus 101 eeedd~DDlenEf~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~ 166 (1085)
T PLN02400 101 EDEDDVDDLENEFNYAQGNGKARHQWQ----------GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQS 166 (1085)
T ss_pred cccccchhhhhhhcccccccccccccc----------ccCccccCcccccC----CCCccccCCcccCCCCCCCCCcccc
Confidence 788999999999999653333323321 5665555 456663 4789999999999999988888877
Q ss_pred cCCCCC---CCCccc---cccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCC
Q 001430 162 MASPGV---GPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGD 235 (1079)
Q Consensus 162 ~~~~~~---~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1079)
++|+.. +.|||| ||+|+.+ ..++|.+||+||+++||||||+||||||+||+||+|++.++.++. +|++|++
T Consensus 167 ~~~~~~~~~~~~~~vh~~p~~d~~~-~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~ 243 (1085)
T PLN02400 167 VRTTSGPLGPAERNANSSPYIDPRQ-PVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGD 243 (1085)
T ss_pred ccCCcccccccCCcccccCccCccc-CCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccC
Confidence 777643 456899 5998533 366789999999999999999999999999999998776665533 3555555
Q ss_pred CCCCCCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 001430 236 IDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISW 315 (1079)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~w 315 (1079)
.+| ++++++|+++||+.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|
T Consensus 244 ~~~-~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~W 322 (1085)
T PLN02400 244 MEG-TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSW 322 (1085)
T ss_pred CCC-CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHH
Confidence 443 2334678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCc
Q 001430 316 IFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAA 395 (1079)
Q Consensus 316 iL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~ 395 (1079)
+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||++
T Consensus 323 ll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS 402 (1085)
T PLN02400 323 LLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSA 402 (1085)
T ss_pred HHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCch
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 001430 396 MLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPE 475 (1079)
Q Consensus 396 ~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~ 475 (1079)
+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+
T Consensus 403 ~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~ 482 (1085)
T PLN02400 403 MLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPE 482 (1085)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEE
Q 001430 476 EGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLL 555 (1079)
Q Consensus 476 e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il 555 (1079)
++|.|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||
T Consensus 483 ~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~IL 562 (1085)
T PLN02400 483 EGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLL 562 (1085)
T ss_pred cccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhh
Q 001430 556 NLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNR 635 (1079)
Q Consensus 556 ~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR 635 (1079)
|||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||
T Consensus 563 NlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR 642 (1085)
T PLN02400 563 NVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNR 642 (1085)
T ss_pred ecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHH
Q 001430 636 TALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQM 715 (1079)
Q Consensus 636 ~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1079)
+||||++||..++.....+.|+|||+.|++.+.++....++++..+..+++.++++++++++++++ ++++++.+++++
T Consensus 643 ~aLYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 720 (1085)
T PLN02400 643 QALYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEG--YDDERSLLMSQK 720 (1085)
T ss_pred eeeccCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccchhhhhhhhh
Confidence 999999998765432222222345576666443332222333334455667789999999999887 777888899999
Q ss_pred HHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEE
Q 001430 716 SLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIY 795 (1079)
Q Consensus 716 ~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY 795 (1079)
+++++||+|.+|++|++++.||.+...+++++++||+||+||+||++|+||+||||.|+|+|||+.||++||++||||+|
T Consensus 721 ~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY 800 (1085)
T PLN02400 721 SLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIY 800 (1085)
T ss_pred hhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEe
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHH
Q 001430 796 CMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVC 875 (1079)
Q Consensus 796 ~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~ 875 (1079)
++|++++|.|+||+|+.++++||+|||+|++||+++++||+++|+.++|+++|||+|+++++||++++++++|+++|++|
T Consensus 801 ~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~ 880 (1085)
T PLN02400 801 CMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAFC 880 (1085)
T ss_pred cCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999999999999999999999999999988778999999999999999999999999999999999
Q ss_pred HHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeee
Q 001430 876 LLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTV 955 (1079)
Q Consensus 876 Ll~G~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~V 955 (1079)
|++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|+++|+++||++++++|+|++++++|.|
T Consensus 881 LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~V 960 (1085)
T PLN02400 881 LITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTV 960 (1085)
T ss_pred HHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001430 956 TSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQ 1035 (1079)
Q Consensus 956 TpKg~~~d~~~~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~ 1035 (1079)
|+|..++++.++++|.|+||++++|+++++++|++|+++|+++++++++++||++++++|+++|+++|+|||++|||||+
T Consensus 961 TsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~ 1040 (1085)
T PLN02400 961 TSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQ 1040 (1085)
T ss_pred cCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99998755567899999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHhhheEecCCCCCCCCC-CccccCCCC
Q 001430 1036 NRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGP-DVEQCGINC 1079 (1079)
Q Consensus 1036 ~~~P~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~-~~~~~~~~~ 1079 (1079)
+|+|+||++||++||++||||||+|+||+++++|| ++++|||+|
T Consensus 1041 ~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1041 NRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred CCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 99999999999999999999999999999999999 899999999
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=3e-314 Score=2774.96 Aligned_cols=1059 Identities=68% Similarity=1.235 Sum_probs=978.7
Q ss_pred CCCCCCccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCC
Q 001430 4 EGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDRE 83 (1079)
Q Consensus 4 ~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e 83 (1079)
.+++++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |
T Consensus 23 d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~ 101 (1094)
T PLN02436 23 DEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-E 101 (1094)
T ss_pred ccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-c
Confidence 355778999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred cCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCc--Cc--CCCCCCcccCCccccCCCCCCCccc
Q 001430 84 EDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDN--EV--SHNHIPRLTGGQEVSGELSAASPEH 159 (1079)
Q Consensus 84 ~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1079)
||||+||+|||||+. .++.+.++++|+|+||+|++|++.+.+...++. +. +.+++|++++|| +++|++ +++|
T Consensus 102 ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~ 177 (1094)
T PLN02436 102 EEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRH 177 (1094)
T ss_pred ccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Cccc
Confidence 788899999999987 355566888999999999999998876443322 12 134789999998 578887 3556
Q ss_pred cccCCCCCCCCccc-c--ccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCC
Q 001430 160 LSMASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDI 236 (1079)
Q Consensus 160 ~~~~~~~~~~~~~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1079)
+.++|+.++.|||| | |+|. ..+.++|.+||+||+++||||||+||||||+||+||++|++++.+ . ++++++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~-~--~~~~~~~~ 253 (1094)
T PLN02436 178 ALIVPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKH-E--GGNDGGNN 253 (1094)
T ss_pred ccccCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccccccc-c--cccccCCC
Confidence 76677776678999 4 8773 223778999999999999999999999999999999855544443 2 45555555
Q ss_pred CCCCCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 001430 237 DASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWI 316 (1079)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wi 316 (1079)
+| ++.+++|.+++|++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+
T Consensus 254 ~~-~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wl 332 (1094)
T PLN02436 254 DG-DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWI 332 (1094)
T ss_pred CC-CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHH
Confidence 43 23346788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001430 317 FDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 317 L~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++
T Consensus 333 l~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~ 412 (1094)
T PLN02436 333 LDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 412 (1094)
T ss_pred HccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 001430 397 LTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEE 476 (1079)
Q Consensus 397 ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e 476 (1079)
||||||.|||+|||+||||||||+|||||||+||++|.|++++|++|+|++|||+|||||||||+|||+|+++++++|++
T Consensus 413 LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~ 492 (1094)
T PLN02436 413 LTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPED 492 (1094)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred cccccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEE
Q 001430 477 GWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLN 556 (1079)
Q Consensus 477 ~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~ 556 (1079)
+|.|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||
T Consensus 493 ~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILN 572 (1094)
T PLN02436 493 GWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLN 572 (1094)
T ss_pred hhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEe
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhh
Q 001430 557 LDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRT 636 (1079)
Q Consensus 557 lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ 636 (1079)
||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+
T Consensus 573 LDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~ 652 (1094)
T PLN02436 573 VDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQ 652 (1094)
T ss_pred cccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCC-c----ccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHh
Q 001430 637 ALYGYEPPLKPKHRKPGL-L----SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLL 711 (1079)
Q Consensus 637 ALyg~~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1079)
||||++||...+.+..++ | |+|||+.|+++++.+++..+ +.++.+...++++++++++++++ .+++++..
T Consensus 653 aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 727 (1094)
T PLN02436 653 ALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK---KKKNREASKQIHALENIEEGIEG--SNNEKSSE 727 (1094)
T ss_pred eeeccCCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc--ccchhhhh
Confidence 999999987655333222 2 24556776654332221111 12333455678889999998887 67788889
Q ss_pred hhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCC
Q 001430 712 MSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGW 791 (1079)
Q Consensus 712 ~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGW 791 (1079)
++++.++++||+|++|++|+++++||.+...+++++++||+||+||+||++|+||+||||.|+|+|||+.||++||++||
T Consensus 728 ~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGW 807 (1094)
T PLN02436 728 TPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGW 807 (1094)
T ss_pred hhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCC
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 001430 792 RSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTL 871 (1079)
Q Consensus 792 rsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylll 871 (1079)
|++|++|++++|.|+||+|+.+++.||+|||+|++||++++++|+|+|+.++|+|+|||+|+++++||++++++++|+++
T Consensus 808 rSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~Slp~liY~~l 887 (1094)
T PLN02436 808 RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTL 887 (1094)
T ss_pred ceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999999999998877899999999999999999999999999999
Q ss_pred HHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCC
Q 001430 872 PAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDT 951 (1079)
Q Consensus 872 P~l~Ll~G~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~ 951 (1079)
|++||++|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|+++|+++||++++++|+|+++++
T Consensus 888 P~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~ 967 (1094)
T PLN02436 888 PAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNT 967 (1094)
T ss_pred HHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001430 952 NFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1031 (1079)
Q Consensus 952 ~F~VTpKg~~~d~~~~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL 1031 (1079)
+|.||+|..+ ++.++++|.|+||++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++||
T Consensus 968 ~F~VTsK~~d-~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL 1046 (1094)
T PLN02436 968 NFTVTSKAAD-DGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGL 1046 (1094)
T ss_pred cceecccccc-cccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 346789999999999999999999999999999999999899999999999999999999999999999
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001430 1032 MGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1032 ~gR~~~~P~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
|||++|+||||++||++||++||||||+|+||+++ +||++++|||||
T Consensus 1047 ~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1047 LGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred hccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 99999999999999999999999999999999999 999999999999
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=9.4e-301 Score=2662.00 Aligned_cols=1015 Identities=70% Similarity=1.246 Sum_probs=926.8
Q ss_pred CCCCCCCCCccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccC
Q 001430 1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG 80 (1079)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~g 80 (1079)
|.++.+.+++ +..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|
T Consensus 1 ~~~~~~~~~~--~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~ 78 (1044)
T PLN02915 1 MDDEDRPPTR--QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEG 78 (1044)
T ss_pred CCcccCCccc--cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccC
Confidence 4455444443 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcCcCCCCCCcccCCccccCCCCCCCcccc
Q 001430 81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL 160 (1079)
Q Consensus 81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1079)
||||||++||+|||||+..+++. +.|+|++|++|++.|.+++.+ .+++|++++ ++|++
T Consensus 79 d~~~~~~~dd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------- 136 (1044)
T PLN02915 79 DDEEGNDMDDFEDEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------- 136 (1044)
T ss_pred Cccccccchhhhhhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------
Confidence 98889999999999998542221 228899999999877442221 134666665 23332
Q ss_pred ccCCCCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCC
Q 001430 161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240 (1079)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1079)
-+.+||+|| |||||+||||||+||+||+ |++.+.+. . + +.+ +
T Consensus 137 ------------------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~-~----~--~~~--~ 178 (1044)
T PLN02915 137 ------------------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKD-D----S--DDG--D 178 (1044)
T ss_pred ------------------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccc-c----c--CCC--C
Confidence 025899997 8999999999999999997 44444431 1 1 111 1
Q ss_pred CCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 001430 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQF 320 (1079)
Q Consensus 241 ~~~~~~~~~~~~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~ 320 (1079)
..+++|.++|++.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|+
T Consensus 179 ~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~ 258 (1044)
T PLN02915 179 DKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQF 258 (1044)
T ss_pred CCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccC
Confidence 22357889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 001430 321 PKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFE 400 (1079)
Q Consensus 321 ~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~ 400 (1079)
+||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||
T Consensus 259 ~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~ 338 (1044)
T PLN02915 259 PKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFD 338 (1044)
T ss_pred ccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccc
Q 001430 401 ALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480 (1079)
Q Consensus 401 al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m 480 (1079)
||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|
T Consensus 339 AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m 418 (1044)
T PLN02915 339 TLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVM 418 (1044)
T ss_pred HHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCC
Q 001430 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCD 560 (1079)
Q Consensus 481 ~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcD 560 (1079)
+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||
T Consensus 419 ~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCD 498 (1044)
T PLN02915 419 QDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCD 498 (1044)
T ss_pred cCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcC
Q 001430 561 HYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 640 (1079)
Q Consensus 561 h~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg 640 (1079)
||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+||||
T Consensus 499 mY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG 578 (1044)
T PLN02915 499 HYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYG 578 (1044)
T ss_pred cccCcchhhHhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC-----cccccCCCcccCCCcCccCC---------C-ccc------------CCCCCCCCCccccch
Q 001430 641 YEPPLKPKHRKPGL-----LSSLFGGSRKKNSKSSKKGS---------D-KKK------------SSKHVDPTVPIFSLE 693 (1079)
Q Consensus 641 ~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~-~~~------------~~~~~~~~~~~~~~~ 693 (1079)
++||..++.++.++ .|+|||+.++++++..++.. . +++ .....+++.+.|+++
T Consensus 579 ~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1044)
T PLN02915 579 YDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLE 658 (1044)
T ss_pred cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99997655444433 12456666655433211100 0 000 001233556788999
Q ss_pred hhhhcccCCCCch-hhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcc
Q 001430 694 DIEEGVEGAGFDD-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWI 772 (1079)
Q Consensus 694 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ 772 (1079)
+++++++| +++ ++++.++++.++++||+|.+|++|++++.+|.+..++++++|+||+||+||+||++|+||+||||.
T Consensus 659 ~~~~~~~~--~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~ 736 (1044)
T PLN02915 659 EIEEGLEG--YDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWI 736 (1044)
T ss_pred cccccccc--ccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCcc
Confidence 99999888 444 777889999999999999999999999999999988999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhh
Q 001430 773 YGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAY 852 (1079)
Q Consensus 773 ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Y 852 (1079)
|+|+|||+.||++||++|||++|++|++++|.|+||+|+.++++||+|||+|++||++++++|+++++.++|+++||++|
T Consensus 737 YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Y 816 (1044)
T PLN02915 737 YGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAY 816 (1044)
T ss_pred ccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999877789999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhH
Q 001430 853 VNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVS 932 (1079)
Q Consensus 853 l~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vs 932 (1079)
+++++||++++++++|+++|++||++|++++|.++.+++++|+++|++++++++++++|+|+++++||||||||+|++++
T Consensus 817 l~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tS 896 (1044)
T PLN02915 817 INTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVS 896 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999888878888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCeeecCCCCCCC-CCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 001430 933 SHLFAVFQGLLKVLAGIDTNFTVTSKASDED-GDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLF 1011 (1079)
Q Consensus 933 a~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d-~~~~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~ 1011 (1079)
+++||++++++|+|++++++|+||+|..+.+ +.++++|.|+||++++|+++++++|++|+++|+++++++++++||+++
T Consensus 897 a~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~ 976 (1044)
T PLN02915 897 AHLFAVFQGLLKVLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLF 976 (1044)
T ss_pred HHHHHHHHHHHHHhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 9999999999999999999999999997533 346799999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001430 1012 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1012 g~l~~~~Wvl~nl~Pfl~gL~gR~~~~P~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
+++|+++|+++|+|||++|||||++|+||||++||++||++||||||+|+||+++++||++++|||+|
T Consensus 977 ~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 977 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.3e-296 Score=2625.42 Aligned_cols=1010 Identities=73% Similarity=1.272 Sum_probs=933.0
Q ss_pred CCCCccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcC
Q 001430 6 ETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (1079)
Q Consensus 6 ~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e 85 (1079)
++++||+++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||
T Consensus 23 ~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee 101 (1040)
T PLN02189 23 HEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDE 101 (1040)
T ss_pred ccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-ccc
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred CCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcCcCCCCCCcccCCcc--ccCCCCCCCc--cccc
Q 001430 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQE--VSGELSAASP--EHLS 161 (1079)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~ 161 (1079)
||+||+||||++.. ++.+.++++|+|+|++|++|++.+...+ .+++|++++||. +++|++..|+ +|+.
T Consensus 102 ~~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1040)
T PLN02189 102 EDIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDEN-------NQFPPVITGVRSRPVSGEFPIGSGYGHGEQ 173 (1040)
T ss_pred ccchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCCC-------cCCCcccccCccccccCCcCcccccccccc
Confidence 88999999999865 4455678899999999999998764422 245789999873 7888874322 3444
Q ss_pred cCCCCCCCCccc-c--ccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCC
Q 001430 162 MASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDA 238 (1079)
Q Consensus 162 ~~~~~~~~~~~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1079)
++++. .|||| | |+| .+.|.|||+||++ ||||||+||+||++ . ++ +
T Consensus 174 ~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~------~-------~~---~- 221 (1040)
T PLN02189 174 MLSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN------L-------GP---D- 221 (1040)
T ss_pred ccCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc------C-------CC---C-
Confidence 55665 48999 4 876 4567999999975 99999999999951 0 11 1
Q ss_pred CCCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 001430 239 STDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFD 318 (1079)
Q Consensus 239 ~~~~~~~~~~~~~~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~ 318 (1079)
++++++|.++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+
T Consensus 222 -~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~ 300 (1040)
T PLN02189 222 -PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILD 300 (1040)
T ss_pred -CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHc
Confidence 2233567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccchhhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 001430 319 QFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (1079)
Q Consensus 319 q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt 398 (1079)
|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||
T Consensus 301 q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 380 (1040)
T PLN02189 301 QFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT 380 (1040)
T ss_pred cCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 001430 399 FEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGW 478 (1079)
Q Consensus 399 f~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w 478 (1079)
||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|
T Consensus 381 f~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~ 460 (1040)
T PLN02189 381 FEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGW 460 (1040)
T ss_pred HHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEec
Q 001430 479 VMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLD 558 (1079)
Q Consensus 479 ~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lD 558 (1079)
.|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+||||||+|||||||||||
T Consensus 461 ~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLD 540 (1040)
T PLN02189 461 IMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLD 540 (1040)
T ss_pred eeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEcc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhh
Q 001430 559 CDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (1079)
Q Consensus 559 cDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 638 (1079)
||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||
T Consensus 541 CDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~AL 620 (1040)
T PLN02189 541 CDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQAL 620 (1040)
T ss_pred CccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHH
Q 001430 639 YGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
Q Consensus 639 yg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
||++|+...+.+..++|++|||..+++.++.+... +.. .+++++ .+++++..+++++++
T Consensus 621 yG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~--~~~~~~~~~~~~~~~ 679 (1040)
T PLN02189 621 YGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKNGL-------NGE------------VAALGG--MESDKEMLMSQMNFE 679 (1040)
T ss_pred eccCcccccccccccccchhhhccccccccccccc-------ccc------------cccccc--cchhhhhhhhhhhhH
Confidence 99999866555555555555655544322211100 000 011111 344555677889999
Q ss_pred HhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCC
Q 001430 719 KRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
Q Consensus 719 ~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p 798 (1079)
++||+|.+|++|++.+.+|.+..+.++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|
T Consensus 680 ~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p 759 (1040)
T PLN02189 680 KKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMP 759 (1040)
T ss_pred hhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCC
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001430 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLL 877 (1079)
Q Consensus 799 ~~~af~G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~-~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll 877 (1079)
++++|.|+||+|+.++++||+|||+|++||+++++||+++|+. ++|+|+|||+|+++++||++++++++|+++|++||+
T Consensus 760 ~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll 839 (1040)
T PLN02189 760 KRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLL 839 (1040)
T ss_pred CcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999998763 679999999999999999999999999999999999
Q ss_pred hCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecC
Q 001430 878 TNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTS 957 (1079)
Q Consensus 878 ~G~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTp 957 (1079)
+|++++|.++++++++|+++|++++++.++|++|+|+++++||||||||+|+++|+++||++++++|+|++++++|.||+
T Consensus 840 ~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTs 919 (1040)
T PLN02189 840 TGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTS 919 (1040)
T ss_pred cCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001430 958 KASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 1037 (1079)
Q Consensus 958 Kg~~~d~~~~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~~~ 1037 (1079)
|..+ ++.++++|.|+||++++|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|
T Consensus 920 K~~~-d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r 998 (1040)
T PLN02189 920 KATD-DDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNR 998 (1040)
T ss_pred cccc-ccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9887 456789999999999999999999999999999999998889899999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001430 1038 TPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1079 (1079)
Q Consensus 1038 ~P~~v~~~s~~la~~~~~lwv~i~~~~~~~~~~~~~~~~~~~ 1079 (1079)
+||||++||++|+++||||||+|+||+++++||.+++|||+|
T Consensus 999 ~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 999 TPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred CCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=2.4e-284 Score=2508.73 Aligned_cols=971 Identities=68% Similarity=1.220 Sum_probs=881.2
Q ss_pred ccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcCCCCCCccc
Q 001430 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGAS 93 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e~~~dd~~~ 93 (1079)
++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||||+||+||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~~ 69 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVET 69 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhhh
Confidence 567899999999999999999999999999999999999999999999999999998 3667899999
Q ss_pred ccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcCcCCCCCCcccCCccccCCCCCCCccccccCCCCCCCCccc
Q 001430 94 DFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRI 173 (1079)
Q Consensus 94 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 173 (1079)
||+-+ .++++ ++|++|++.+ .+.+++|++++ +++|+
T Consensus 70 ~~~~~------~~~~~-----~~~~~~~~~~---------~~~~~~~~~~~---~~~~~--------------------- 105 (977)
T PLN02195 70 KHSRN------QSTMA-----SHLNDTQDVG---------IHARHISSVST---VDSEL--------------------- 105 (977)
T ss_pred hhccc------hhhhh-----hhcccCcCCC---------CCCcccccccc---CCCcc---------------------
Confidence 99421 22322 7778777632 11123455543 11111
Q ss_pred cccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCccCcccccccc
Q 001430 174 HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEA 253 (1079)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1079)
+. +|||++||||||+||.||+||+.++.++.. .| | +.+ ++.+++|+++ ||.
T Consensus 106 ----------------~~------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~--~-~~~--~~~~~~~~~~-~~~ 156 (977)
T PLN02195 106 ----------------ND------EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HK--A-QIP--PEQQMEEKPS-ADA 156 (977)
T ss_pred ----------------cC------ccCCHHHHHHHHHHHHhhhhhccccccccc-cc--c-CCC--CccCCccccc-ccc
Confidence 11 399999999999999999877765554322 22 2 222 2334567776 999
Q ss_pred CCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhh
Q 001430 254 RQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLD 333 (1079)
Q Consensus 254 ~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~d 333 (1079)
++||+||++++++.|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|
T Consensus 157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 236 (977)
T PLN02195 157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID 236 (977)
T ss_pred cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhh
Q 001430 334 RLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWV 413 (1079)
Q Consensus 334 rL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~Wv 413 (1079)
||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+||
T Consensus 237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 316 (977)
T PLN02195 237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV 316 (977)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCC
Q 001430 414 PFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRD 493 (1079)
Q Consensus 414 PFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rd 493 (1079)
||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++||
T Consensus 317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~d 396 (977)
T PLN02195 317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRD 396 (977)
T ss_pred ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001430 494 HPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 494 hp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+++||||+|||||||||||||||+|||++||+||
T Consensus 397 Hp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AM 476 (977)
T PLN02195 397 HPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM 476 (977)
T ss_pred CcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCC
Q 001430 574 CFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPG 653 (1079)
Q Consensus 574 cff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~ 653 (1079)
|||+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.++.+
T Consensus 477 Cf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~ 556 (977)
T PLN02195 477 CFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSS 556 (977)
T ss_pred hhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765555544
Q ss_pred C-cccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHh
Q 001430 654 L-LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTL 732 (1079)
Q Consensus 654 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l 732 (1079)
+ |++|||+.+++....+ +. ..+..++.+.+..++.++++++ ..+++++.++++++++++||+|.+|++|++
T Consensus 557 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~ 628 (977)
T PLN02195 557 SSSSSCCCPTKKKPEQDP-SE--IYRDAKREDLNAAIFNLREIDN-----YDEYERSMLISQMSFEKTFGLSSVFIESTL 628 (977)
T ss_pred cccccccccccccccccc-hh--hccccccccccccccccccccc-----cchhhhhhhhhhhHHHHhhcccHHHHHHHH
Confidence 3 4445556544322111 00 0111122222333444444332 123466778899999999999999999999
Q ss_pred hhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHH
Q 001430 733 MENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLS 812 (1079)
Q Consensus 733 ~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~ 812 (1079)
++.+|.+..+.++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|.+++|.|+||+|+.
T Consensus 629 ~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~ 708 (977)
T PLN02195 629 MENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLS 708 (977)
T ss_pred HHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHhhccchhHhhhcccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHH
Q 001430 813 DRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLAS 891 (1079)
Q Consensus 813 ~~lkQR~RWA~G~lQIll~k~~PL~~g~~-~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s~~~l 891 (1079)
++++||+|||+|++||+++++||+++|+. ++|+|+|||+|+++++||++++++++|+++|++||++|++++|.++++++
T Consensus 709 ~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~ 788 (977)
T PLN02195 709 DRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLAS 788 (977)
T ss_pred HHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHH
Confidence 99999999999999999999999998764 78999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCCCccceee
Q 001430 892 IVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYM 971 (1079)
Q Consensus 892 ~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~ 971 (1079)
++|+++|+++++++++|++|+|+++++||||||||+|+++|+||||++++++|+|++++++|.||+|..+ +++++++|.
T Consensus 789 ~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~d-d~~~~~~Y~ 867 (977)
T PLN02195 789 MLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAAD-DTEFGELYM 867 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceecccccc-ccchhccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 557899999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 001430 972 FKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLAS 1051 (1079)
Q Consensus 972 f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~~~~P~~v~~~s~~la~ 1051 (1079)
|+||++++|+++++++|++|+++|+++++++++++||++++++|+++|+++|+|||++|||||++|+||||++||++|++
T Consensus 868 f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~ 947 (977)
T PLN02195 868 VKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLAS 947 (977)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEecCCCCCCCCCC-cccc-CCCC
Q 001430 1052 IFSLLWVRVDPFTTRVTGPD-VEQC-GINC 1079 (1079)
Q Consensus 1052 ~~~~lwv~i~~~~~~~~~~~-~~~~-~~~~ 1079 (1079)
+||||||+|+||+++++||+ +++| |++|
T Consensus 948 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 948 VFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 99999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=4.3e-245 Score=2180.65 Aligned_cols=929 Identities=52% Similarity=0.959 Sum_probs=803.6
Q ss_pred CCccccccCCccccc--cCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcC
Q 001430 8 GVKSIKNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 85 (1079)
Q Consensus 8 ~~~~~~~~~~~~Cqi--Cgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e 85 (1079)
..+.+++.++..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.++| +.||+||++||.+ | ++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~ 182 (1135)
T PLN02248 115 SHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LD 182 (1135)
T ss_pred CCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--cc
Confidence 345678889999998 99999999999999999 999999999999999996 7999999999775 3 22
Q ss_pred CCCCCcccccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCcCcCC-CCCCcccCCccccCCCCCCCccccccCC
Q 001430 86 GDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSH-NHIPRLTGGQEVSGELSAASPEHLSMAS 164 (1079)
Q Consensus 86 ~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1079)
|+.+|.+++ ... ++.. + .++.+...+. .+.+++..+| +|||+ |+
T Consensus 183 ~~~~~~~~~----------~~~----~~~~----~------~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~---- 227 (1135)
T PLN02248 183 DEVPDESSG----------ALP----LPPP----G------GSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN---- 227 (1135)
T ss_pred ccccccccc----------ccc----CCCC----C------CcccccccccccccchhccCC--CCCCC-----Cc----
Confidence 222222111 111 1100 0 0011110000 0123455556 67877 55
Q ss_pred CCCCCCccccccCCCCCCCCccccCCCCcCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCcc
Q 001430 165 PGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLV 244 (1079)
Q Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1079)
||++++| ++|||||+.|++... . |++.+ + .+
T Consensus 228 ---------------------~w~~~~~--~~~~~~~~~~~~~~~-------------~---------~~~~~---~-~~ 258 (1135)
T PLN02248 228 ---------------------RWLFETK--GTYGYGNAVWPKDDG-------------Y---------GDDGG---G-GG 258 (1135)
T ss_pred ---------------------eeeeecc--cccccccccCccccc-------------c---------CCCCC---c-cc
Confidence 7999999 999999999998642 1 11101 0 11
Q ss_pred CccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001430 245 DDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWL 324 (1079)
Q Consensus 245 ~~~~~~~~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~ 324 (1079)
...+||++|+||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+
T Consensus 259 -~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~ 337 (1135)
T PLN02248 259 -PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLC 337 (1135)
T ss_pred -cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1146899999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred ccccchhhhHHhhhhccCC-----CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001430 325 PVNRETYLDRLSLRYEREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 325 Pi~R~~~~drL~~r~~~~~-----~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 399 (1079)
||+|.||+|||++||+.|+ ++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 338 Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf 417 (1135)
T PLN02248 338 PINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTF 417 (1135)
T ss_pred ccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHH
Confidence 9999999999999998643 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 001430 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVA----------- 468 (1079)
Q Consensus 400 ~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~----------- 468 (1079)
|||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++
T Consensus 418 ~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~ 497 (1135)
T PLN02248 418 EAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNA 497 (1135)
T ss_pred HHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ----h---------------hhcCCcccccccCCCCCCCCC--------CCCCccceeeecccCC------------CCC
Q 001430 469 ----K---------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLD 509 (1079)
Q Consensus 469 ----~---------------~~~~p~e~w~m~dgt~w~g~~--------~rdhp~~iqv~l~~~g------------~~d 509 (1079)
+ ++|+|+++| |+|||+|||+| ++|||+|||||+++++ ..|
T Consensus 498 ~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d 576 (1135)
T PLN02248 498 REEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLID 576 (1135)
T ss_pred hHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCccccccccc
Confidence 1 256789999 99999999994 4699999999998753 112
Q ss_pred C--CCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEE
Q 001430 510 A--EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (1079)
Q Consensus 510 ~--~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~ 587 (1079)
. .+.+||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++||
T Consensus 577 ~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAf 655 (1135)
T PLN02248 577 FTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICY 655 (1135)
T ss_pred ccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEE
Confidence 2 2448999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred EecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCC
Q 001430 588 VQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNS 667 (1079)
Q Consensus 588 VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1079)
|||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||..++..+. | +|||+.++..+
T Consensus 656 VQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~--~-~~~~~~~~~~~ 732 (1135)
T PLN02248 656 VQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC--F-GSCKFTKKKKK 732 (1135)
T ss_pred EcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc--c-ccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999876433222 2 33334333321
Q ss_pred CcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhh-hcCCCCC------
Q 001430 668 KSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLM-ENGGVPQ------ 740 (1079)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~-e~GG~p~------ 740 (1079)
+.+... +.+ +++++ .++ .++...++++||+|..|++|+.. +..|.+.
T Consensus 733 ~~~~~~------------~~~---~~~~~-------~~~----~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~ 786 (1135)
T PLN02248 733 ETSASE------------PEE---QPDLE-------DDD----DLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSV 786 (1135)
T ss_pred cccccc------------ccc---ccccc-------ccc----hhhhhhhhhhhccchhhhhhhHHHhhccccccccccc
Confidence 111000 000 11111 011 13456789999999999999843 2232221
Q ss_pred -------------CcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccC
Q 001430 741 -------------SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSA 807 (1079)
Q Consensus 741 -------------~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~a 807 (1079)
...++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++.+|.|++
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlA 866 (1135)
T PLN02248 787 KNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTA 866 (1135)
T ss_pred ccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCC
Confidence 2235689999999999999999999999999999999999999999999999999998888999999
Q ss_pred CCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccch
Q 001430 808 PINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQIS 887 (1079)
Q Consensus 808 Petl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s 887 (1079)
|+|+.++++||+|||+|++||++++++|++. .++|+++|||+|+++++||++++++++|+++|++||++|++++|+.+
T Consensus 867 P~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~ 944 (1135)
T PLN02248 867 PINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLN 944 (1135)
T ss_pred CCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 9999999999999999999999999999985 46899999999999999999999999999999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCC--CC
Q 001430 888 NLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDED--GD 965 (1079)
Q Consensus 888 ~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d--~~ 965 (1079)
..++++++.++++++++.+++++|+|+++++||||||||+|++++++++|++++++|+|++++++|+||+|..+.+ ..
T Consensus 945 ~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~ 1024 (1135)
T PLN02248 945 VTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDE 1024 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccc
Confidence 6666666667788899999999999999999999999999999999999999999999999999999999987643 24
Q ss_pred ccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 001430 966 FTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW 1045 (1079)
Q Consensus 966 ~~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~~~~P~~v~~~ 1045 (1079)
|+++|.|+||++++|+++++++|++|+++|++|++.+.++.|+.+++++|+++|+++|+|||+||||||++|+||||++|
T Consensus 1025 ~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~ 1104 (1135)
T PLN02248 1025 FADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVW 1104 (1135)
T ss_pred cchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHH
Confidence 78999999999999999999999999999999999887788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheEecCCCCC
Q 001430 1046 SILLASIFSLLWVRVDPFTTR 1066 (1079)
Q Consensus 1046 s~~la~~~~~lwv~i~~~~~~ 1066 (1079)
|++|++++|||||+|+||+..
T Consensus 1105 s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1105 SGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHHHHHHheEeccccCc
Confidence 999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=5.3e-218 Score=1900.69 Aligned_cols=719 Identities=71% Similarity=1.260 Sum_probs=687.4
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhh
Q 001430 351 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 430 (1079)
Q Consensus 351 VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF 430 (1079)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCCCC
Q 001430 431 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 510 (1079)
Q Consensus 431 ~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~ 510 (1079)
+++.|+++++.+|+|++|||+|||||||||+|||+|+++.+++|+++|+|+||++|||++++|||+||||+++++|+.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEec
Q 001430 511 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 590 (1079)
Q Consensus 511 ~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~ 590 (1079)
+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcC
Q 001430 591 PQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (1079)
Q Consensus 591 PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1079)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+..+.++||+|||++++++++.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777765555555555443332
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHH
Q 001430 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (1079)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 750 (1079)
++. +++..++.+++.+++++++++|++++ .+++++..+++++|+++||+|++|++|+.++.|+.+.+.+++++|+|
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEG--SDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccc--hhcccccccccccccccccccccccc--chhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 221 12334556778899999999998776 67788899999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhh
Q 001430 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILF 830 (1079)
Q Consensus 751 a~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQIll 830 (1079)
|+||+||+||++|+|||||||.|+|+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||++
T Consensus 397 A~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~f 476 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFF 476 (720)
T ss_pred HHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 001430 831 SRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMR 910 (1079)
Q Consensus 831 ~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s~~~l~~fi~lflsi~~~~lLe~r 910 (1079)
+|+||+|+++.++|+++|||+|++.++|+++++|+++|+++|++||++|++++|++++.++++|+++|+++++++++|++
T Consensus 477 Sr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ 556 (720)
T PF03552_consen 477 SRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFR 556 (720)
T ss_pred hcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCC-CCCCccceeecccccchHHHHHHHHHHH
Q 001430 911 WSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD-EDGDFTELYMFKWTTLLIPPTTLLVINL 989 (1079)
Q Consensus 911 wsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~-~d~~~~~ly~f~ws~L~iP~~~Llilnl 989 (1079)
|+|+++++||||||||+|+++++|+||++++++|+|++++++|.||+|..+ +++.++|+|.|+||++++|++||+++|+
T Consensus 557 wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNL 636 (720)
T PF03552_consen 557 WSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNL 636 (720)
T ss_pred hccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 3455789999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhheEecCCCCCCCC
Q 001430 990 VGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTG 1069 (1079)
Q Consensus 990 iaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~~~~P~~v~~~s~~la~~~~~lwv~i~~~~~~~~~ 1069 (1079)
+|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++||++||++|+||||+||||+++++|
T Consensus 637 va~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~~ 716 (720)
T PF03552_consen 637 VAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTTG 716 (720)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 001430 1070 PDVE 1073 (1079)
Q Consensus 1070 ~~~~ 1073 (1079)
|+++
T Consensus 717 ~~~~ 720 (720)
T PF03552_consen 717 PDLK 720 (720)
T ss_pred CCCC
Confidence 9875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=7.3e-199 Score=1741.53 Aligned_cols=726 Identities=36% Similarity=0.647 Sum_probs=656.6
Q ss_pred cCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 001430 253 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 332 (1079)
Q Consensus 253 ~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~ 332 (1079)
+..||++++++++.. ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999984 999999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhh
Q 001430 333 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (1079)
Q Consensus 333 drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~W 412 (1079)
|||++||+ +||+||||||||||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCC--CCCCCCC
Q 001430 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGNN 490 (1079)
Q Consensus 413 vPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dg--t~w~g~~ 490 (1079)
|||||||||||||||+||+.+.+ ++.+++|++|||+|||||||||+||++.. +...|.++|+ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33458999999999999999999999864 3466777655 6899999
Q ss_pred CCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHH
Q 001430 491 TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALR 570 (1079)
Q Consensus 491 ~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr 570 (1079)
++|||+||||+++++|+ +.++++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-ceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCC
Q 001430 571 EAMCFMMDPNLG-KHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKH 649 (1079)
Q Consensus 571 ~amcff~Dp~~g-~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~ 649 (1079)
+||||||||+.+ +++|||||||+|+ |+|+|+++||||++|+|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999744 5899999999998 7899999999999999999999999999999999999999998743221
Q ss_pred CCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHH
Q 001430 650 RKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVA 729 (1079)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 729 (1079)
.+. . + . .+++ ..++.+++++||+|+.|++
T Consensus 382 ~~~----------------~-------------~---~------------------~~~~-~~~~~~~~~~fg~s~~f~~ 410 (756)
T PLN02190 382 GSL----------------S-------------S---V------------------ATRE-FLAEDSLAREFGNSKEMVK 410 (756)
T ss_pred ccc----------------c-------------c---c------------------cccc-ccchhhhhhhcCCcHHHHH
Confidence 000 0 0 0 0000 2334567889999999999
Q ss_pred HHhhhcCCCCC-CcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCC
Q 001430 730 STLMENGGVPQ-SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP 808 (1079)
Q Consensus 730 S~l~e~GG~p~-~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aP 808 (1079)
|++.+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++||+|++++|.|.+|
T Consensus 411 s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP 490 (756)
T PLN02190 411 SVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMP 490 (756)
T ss_pred HHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCC
Confidence 99876644332 33457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchh
Q 001430 809 INLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISN 888 (1079)
Q Consensus 809 etl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s~ 888 (1079)
+++.++++||+||++|++||+++++||+++++.++|++.||++|++.++ |++++|+++|+++|++||++|++++|..
T Consensus 491 ~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~-- 567 (756)
T PLN02190 491 PGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG-- 567 (756)
T ss_pred CChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--
Confidence 9999999999999999999999999999976668999999999999988 9999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCC-------
Q 001430 889 LASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD------- 961 (1079)
Q Consensus 889 ~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~------- 961 (1079)
.++++++++++++++++++|++|+|+++++||||||||+|+++|+|+||++++++|+|+++++.|+||+|..+
T Consensus 568 ~~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~ 647 (756)
T PLN02190 568 VYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSG 647 (756)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccc
Confidence 4567778888899999999999999999999999999999999999999999999999999999999999643
Q ss_pred ------C-CCCc--cceeecccccchHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 001430 962 ------E-DGDF--TELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAIN---SGYQSWGPLFGKLFFAFWVIVHLYPFLK 1029 (1079)
Q Consensus 962 ------~-d~~~--~~ly~f~ws~L~iP~~~LlilnliaIv~Gi~r~i~---~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~ 1029 (1079)
+ +..+ +++|+|+||++++|+++++++|++|++.|+++++. +..+.|+. ++++++++|+++|++||+|
T Consensus 648 ~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~ 726 (756)
T PLN02190 648 SGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLK 726 (756)
T ss_pred cccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHH
Confidence 1 1112 67899999999999999999999999988887653 23345554 5999999999999999999
Q ss_pred HHhcCC-CCcchhHHHHHHHHHHHHHhhhe
Q 001430 1030 GLMGRQ-NRTPTIVVVWSILLASIFSLLWV 1058 (1079)
Q Consensus 1030 gL~gR~-~~~P~~v~~~s~~la~~~~~lwv 1058 (1079)
|||+|+ +++|++|++.|++|+.+|..+.|
T Consensus 727 gl~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 727 GLFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 999775 69999999999999999998765
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.2e-190 Score=1679.87 Aligned_cols=707 Identities=37% Similarity=0.703 Sum_probs=650.9
Q ss_pred ccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 001430 252 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 330 (1079)
Q Consensus 252 ~~~~pl~rk~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~ 330 (1079)
....||++++++++.. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3556999999998875 6999999999999999999999976654 789999999999999999999999999999999
Q ss_pred hhhHHhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhh
Q 001430 331 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 410 (1079)
Q Consensus 331 ~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~ 410 (1079)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997764 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCC-----CC
Q 001430 411 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 485 (1079)
Q Consensus 411 ~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dg-----t~ 485 (1079)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|+++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 567899999999999999999999976 888887 655444 78
Q ss_pred CCCCC-CCCCccceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCC
Q 001430 486 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (1079)
Q Consensus 486 w~g~~-~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~ 564 (1079)
|++|. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++|+||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98875 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCC
Q 001430 565 NSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP 644 (1079)
Q Consensus 565 ~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~ 644 (1079)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997331
Q ss_pred CCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccch
Q 001430 645 LKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (1079)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 724 (1079)
... +++++ +++
T Consensus 393 ~~~---------------------------------------------~~~~~-----------------------~~~- 403 (734)
T PLN02893 393 LIL---------------------------------------------PEIPE-----------------------LNP- 403 (734)
T ss_pred ccc---------------------------------------------hhhhh-----------------------ccc-
Confidence 000 00000 000
Q ss_pred HHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCccc
Q 001430 725 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 804 (1079)
Q Consensus 725 ~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~ 804 (1079)
.++...+....++++||++|+||.||++|.||++|||.|+|+|||+.||++||++|||++|++|++.+|.
T Consensus 404 ----------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~ 473 (734)
T PLN02893 404 ----------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFL 473 (734)
T ss_pred ----------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhc
Confidence 1112334456789999999999999999999999999999999999999999999999999998888889
Q ss_pred ccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 001430 805 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMP 884 (1079)
Q Consensus 805 G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip 884 (1079)
|++|+|+.++++||+|||+|++||+++++||+++|. ++|++.||++|++.++||++++++++|+++|++||++|++++|
T Consensus 474 G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p 552 (734)
T PLN02893 474 GDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFP 552 (734)
T ss_pred cCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999999999999764 6899999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCC
Q 001430 885 QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 964 (1079)
Q Consensus 885 ~~s~~~l~~fi~lflsi~~~~lLe~rwsGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~ 964 (1079)
..+..++++++.+++++++++++|++|+|.++++||||||||+|.++++++++++++++|.|++++.+|+||+|+.+.+.
T Consensus 553 ~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~ 632 (734)
T PLN02893 553 KASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQ 632 (734)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccc
Confidence 98888888888899999999999999999999999999999999999999999999999999999999999999976422
Q ss_pred C--c-cceeeccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC--Cc
Q 001430 965 D--F-TELYMFKW-TTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQN--RT 1038 (1079)
Q Consensus 965 ~--~-~~ly~f~w-s~L~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~gR~~--~~ 1038 (1079)
. + .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+.+++++++++|++++++||++||++|++ |+
T Consensus 633 ~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~ 710 (734)
T PLN02893 633 SKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKL 710 (734)
T ss_pred ccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 2 3 48999995 8899999999999999999999999875 35788899999999999999999999999986 99
Q ss_pred chhHHHHHHHHHHHHHhh
Q 001430 1039 PTIVVVWSILLASIFSLL 1056 (1079)
Q Consensus 1039 P~~v~~~s~~la~~~~~l 1056 (1079)
|++|++||++||.++.++
T Consensus 711 P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 711 PVKITLISIVLAWALYLA 728 (734)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 999999999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=1.3e-67 Score=643.36 Aligned_cols=495 Identities=25% Similarity=0.394 Sum_probs=388.5
Q ss_pred HH-HHHHHHHHHHHHHHHHhhcccchh----HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHhhhhccCCCCC
Q 001430 272 RM-VIFLRLIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 346 (1079)
Q Consensus 272 R~-~i~~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~ 346 (1079)
|+ ++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|.+.+ .+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 44 566777778999999999877632 34567789999999999999888888888876421 233467
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001430 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (1079)
Q Consensus 347 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 426 (1079)
.+|+|||+||||| |++.++.+|+.+++++|||.||+.|||+|||+++-|.....+
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~---------------------- 183 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDP---------------------- 183 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchh----------------------
Confidence 8999999999998 999999999999999999999999999999987643221111
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCC
Q 001430 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (1079)
Q Consensus 427 e~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g 506 (1079)
.+.+. ++..+++ .+++++
T Consensus 184 ------------------~~~~~---~~~~~~~----~~l~~~------------------------------------- 201 (713)
T TIGR03030 184 ------------------EQAEA---AQRREEL----KEFCRK------------------------------------- 201 (713)
T ss_pred ------------------hhhhh---hhhHHHH----HHHHHH-------------------------------------
Confidence 01110 0001122 223311
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceE
Q 001430 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHV 585 (1079)
Q Consensus 507 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v 585 (1079)
.++.|+.|++ |+|+||||||++++. ++||||+++||||+ +++++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1288999988 788999999999997 79999999999998 7999999999988 588 89
Q ss_pred EEEecCccccCCCcc-------ccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccc
Q 001430 586 CYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSL 658 (1079)
Q Consensus 586 ~~VQ~PQ~F~nid~~-------Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~ 658 (1079)
++||+||.|+|.|+. +++.+++..||+.+++|+|.++++++|||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998754 34567888999999999999999999999999999988
Q ss_pred cCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCC
Q 001430 659 FGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGV 738 (1079)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~ 738 (1079)
+++||+
T Consensus 320 --------------------------------------------------------------------------~~iGGf 325 (713)
T TIGR03030 320 --------------------------------------------------------------------------DEIGGI 325 (713)
T ss_pred --------------------------------------------------------------------------HHcCCC
Confidence 356776
Q ss_pred CCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHH
Q 001430 739 PQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQV 818 (1079)
Q Consensus 739 p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR 818 (1079)
++ ++++||++++++|+++||+++|+++.. ++|++|+|++++++||
T Consensus 326 ~~---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~--~~g~~p~sl~~~~~Qr 370 (713)
T TIGR03030 326 AG---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPL--IAGLAPETLSGHIGQR 370 (713)
T ss_pred CC---------------------------------CCcCcHHHHHHHHHHcCCeEEEecccc--ccccCCCCHHHHHHHH
Confidence 54 689999999999999999999996543 4899999999999999
Q ss_pred HHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHH
Q 001430 819 LRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLF 898 (1079)
Q Consensus 819 ~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s~~~l~~fi~lf 898 (1079)
.||++|++|+++. .+|++ .+++++.||++|+++++||+.++++++|+++|++++++|+.+++.....+ +..+
T Consensus 371 ~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~----~~~~ 442 (713)
T TIGR03030 371 IRWAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALEI----LAYA 442 (713)
T ss_pred HHHhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHHH----HHHH
Confidence 9999999999975 48997 67999999999999999999999999999999999999999988642222 2223
Q ss_pred HHHHHHHHHHhhc-ccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCCCccceeecccccc
Q 001430 899 LSIFATGILEMRW-SGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTL 977 (1079)
Q Consensus 899 lsi~~~~lLe~rw-sGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~L 977 (1079)
++.++.+++.+.| .|.....||+ |. +.+....+.+...+.+.+++++.+|+||+||+..+..+ .+++
T Consensus 443 lp~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~~-------~~~~ 510 (713)
T TIGR03030 443 LPHMLHSLLTNSYLFGRVRWPFWS-EV----YETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDEDY-------FSPL 510 (713)
T ss_pred HHHHHHHHHHHHHHcCCeecchHH-HH----HHHHHHHHHHHHHHHHHhCcCCCCceecCCCccccccc-------cchH
Confidence 4555555554333 3444456775 32 22222334444556667889999999999998644332 2358
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh---cCCC
Q 001430 978 LIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM---GRQN 1036 (1079)
Q Consensus 978 ~iP~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL~---gR~~ 1036 (1079)
++|+++++++|++|+++|+++.+.++. ...+.+++++|.++|++-+..++. +|++
T Consensus 511 ~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~~~~~r~Q 568 (713)
T TIGR03030 511 SRPYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALAVVAERRQ 568 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 899999999999999999999864332 234568999999999998887773 5543
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=3.3e-67 Score=641.13 Aligned_cols=473 Identities=26% Similarity=0.429 Sum_probs=377.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccch----hHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHhhhhccCCCCCCC
Q 001430 273 MVIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQL 348 (1079)
Q Consensus 273 ~~i~~~l~~l~~yl~wRi~~~~~~----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~l 348 (1079)
+++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. ..|...+.+
T Consensus 188 ~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~ 259 (852)
T PRK11498 188 MLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLW 259 (852)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCC
Confidence 356778888999999999987763 34556788999999999999998888888887642 223345678
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001430 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 428 (1079)
|+|||+||||| ||+.++++||.+++++|||.+|+.|||+|||.++- +.
T Consensus 260 P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~---------------------- 307 (852)
T PRK11498 260 PTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FR---------------------- 307 (852)
T ss_pred CcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HH----------------------
Confidence 99999999998 99999999999999999999999999999998751 10
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001430 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~ 508 (1079)
+ ++++
T Consensus 308 -----------------------------~-------la~~--------------------------------------- 312 (852)
T PRK11498 308 -----------------------------Q-------FAQE--------------------------------------- 312 (852)
T ss_pred -----------------------------H-------HHHH---------------------------------------
Confidence 1 1100
Q ss_pred CCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEE
Q 001430 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 587 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v~~ 587 (1079)
..+.|+.|++ |.|+||||+|++++. ++||||+++||||+ +++++|+++|++| .|| ++|+
T Consensus 313 -------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~Vgl 372 (852)
T PRK11498 313 -------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAM 372 (852)
T ss_pred -------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEE
Confidence 0278999876 678999999999997 69999999999997 8999999999865 798 8999
Q ss_pred EecCccccCCCccc-------cccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccC
Q 001430 588 VQFPQRFDGIDRND-------RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG 660 (1079)
Q Consensus 588 VQ~PQ~F~nid~~D-------ry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~ 660 (1079)
||+||.|+|.|+.+ .+.++++.||+..++|+|.++++++|||++++||+||
T Consensus 373 VQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL---------------------- 430 (852)
T PRK11498 373 MQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL---------------------- 430 (852)
T ss_pred EEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH----------------------
Confidence 99999999987643 2467788999999999999999999999999999887
Q ss_pred CCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCC
Q 001430 661 GSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQ 740 (1079)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~ 740 (1079)
+|+||+++
T Consensus 431 ------------------------------------------------------------------------eeVGGfd~ 438 (852)
T PRK11498 431 ------------------------------------------------------------------------DEIGGIAV 438 (852)
T ss_pred ------------------------------------------------------------------------HHhcCCCC
Confidence 46788765
Q ss_pred CcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHH
Q 001430 741 SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLR 820 (1079)
Q Consensus 741 ~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~R 820 (1079)
+++|||++++++|+++||+++|+++..+ .|++|+|++++++||.|
T Consensus 439 ---------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~R 483 (852)
T PRK11498 439 ---------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIR 483 (852)
T ss_pred ---------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHH
Confidence 6899999999999999999999965443 89999999999999999
Q ss_pred hhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Q 001430 821 WALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLS 900 (1079)
Q Consensus 821 WA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~iip~~s~~~l~~fi~lfls 900 (1079)
|++|++|+++. ++|++ .+++++.||++|+++++|++.+++.++|+++|++||++|+.++.+....+ +..+++
T Consensus 484 WarG~lQi~r~-~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i----~~y~lP 555 (852)
T PRK11498 484 WARGMVQIFRL-DNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMI----ALFVLP 555 (852)
T ss_pred HHHHHHHHHHH-hChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHH----HHHHHH
Confidence 99999999974 68987 68999999999999999999999999999999999999998886432111 122344
Q ss_pred HHHHHHHHhhc-ccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCCCccceeecccccchH
Q 001430 901 IFATGILEMRW-SGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLI 979 (1079)
Q Consensus 901 i~~~~lLe~rw-sGvsi~~wWrneqfW~i~~vsa~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~L~i 979 (1079)
.++...+...| +|.....||+ | ++..+.++.++ ...+...+++++.+|+||+||+..+.. .|+|. ++.
T Consensus 556 ~~~~~~l~~~~~~g~~r~~~ws-e---iye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~-----~~~~~-~~~ 624 (852)
T PRK11498 556 HMIHASLTNSRIQGKYRHSFWS-E---IYETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE-----YVDWV-ISR 624 (852)
T ss_pred HHHHHHHHHHHhcCcchHhHHH-H---HHHHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc-----ceehH-HHH
Confidence 44444443333 3322233442 2 13334444443 233444778899999999999765433 24564 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001430 980 PPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1031 (1079)
Q Consensus 980 P~~~LlilnliaIv~Gi~r~i~~g~~~w~~l~g~l~~~~Wvl~nl~Pfl~gL 1031 (1079)
|+++++++|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 625 P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 625 PYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999865331 223456799999999998887766
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=6.7e-45 Score=320.74 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.1
Q ss_pred CccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcccCCCCcCCCC
Q 001430 9 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 88 (1079)
Q Consensus 9 ~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e~e~~~ 88 (1079)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|| |||||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999 566665
Q ss_pred C
Q 001430 89 D 89 (1079)
Q Consensus 89 d 89 (1079)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=1.1e-35 Score=360.03 Aligned_cols=362 Identities=17% Similarity=0.210 Sum_probs=244.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccchh---------HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHHhhhhc
Q 001430 270 PYRMVIFLRLIILGIFLYYRIKNPVHNA---------IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 340 (1079)
Q Consensus 270 ~yR~~i~~~l~~l~~yl~wRi~~~~~~a---------~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~ 340 (1079)
..|+++++..++...|..|+....+... ..+..+.+..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 3677777888888899999987654321 112223334444444444444332211 11111 0100000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhh
Q 001430 341 REGEPSQLAAVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 416 (1079)
Q Consensus 341 ~~~~~~~lp~VDvfV~T~dp~kEpp~v~----~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFC 416 (1079)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456789999999999 998755 4555677779998 589999999998872111
Q ss_pred hhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCcc
Q 001430 417 KKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPG 496 (1079)
Q Consensus 417 kk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~ 496 (1079)
.|+ +.++++.. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 111 12333321 10
Q ss_pred ceeeecccCCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh
Q 001430 497 MIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 576 (1079)
Q Consensus 497 ~iqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff 576 (1079)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||++||||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 013599999887 77889999999999765 57799999999998 7999999999988
Q ss_pred c-CCCCCceEEEEecCccccCCCcc-ccccc-hhhhhhhhhccccccCC--CccccccCchhhhhhhcCCCCCCCCCCCC
Q 001430 577 M-DPNLGKHVCYVQFPQRFDGIDRN-DRYAN-RNTVFFDINLRGLDGIQ--GPVYVGTGCVFNRTALYGYEPPLKPKHRK 651 (1079)
Q Consensus 577 ~-Dp~~g~~v~~VQ~PQ~F~nid~~-Dry~n-~~~vFfdi~~~glDg~q--gp~yvGTgcvfRR~ALyg~~p~~~~~~~~ 651 (1079)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+| ...|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 99 89999999999987631 22211 23455566677888766 357899999999998842
Q ss_pred CCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHH
Q 001430 652 PGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST 731 (1079)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~ 731 (1079)
T Consensus 311 -------------------------------------------------------------------------------- 310 (691)
T PRK05454 311 -------------------------------------------------------------------------------- 310 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCH
Q 001430 732 LMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINL 811 (1079)
Q Consensus 732 l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl 811 (1079)
.||.|.- . ..-||..++++||++++.+|+++||+++|++. ...+++++|+|+
T Consensus 311 ---~~glp~L------------------~------g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl 362 (691)
T PRK05454 311 ---HCGLPPL------------------P------GRGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNL 362 (691)
T ss_pred ---hcCCccc------------------c------ccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCH
Confidence 1221110 0 00134447899999999999999999999954 333489999999
Q ss_pred HHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHH-HHHHHHH
Q 001430 812 SDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMY-CTLPAVC 875 (1079)
Q Consensus 812 ~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liy-lllP~l~ 875 (1079)
.++++||.||++|++|++.. ++ .+++++.+|++|++.++.++.+...+++ ++.|++.
T Consensus 363 ~~~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l~~~~~ 420 (691)
T PRK05454 363 LDELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLLGTALA 420 (691)
T ss_pred HHHHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999852 23 5789999999998877666665444433 3444433
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1e-33 Score=307.65 Aligned_cols=182 Identities=21% Similarity=0.297 Sum_probs=145.5
Q ss_pred CcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCccc
Q 001430 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F 594 (1079)
++++|++|++ ++|+||||||++++..+ ++++||+++|||+. +.|++|++++.+|. || +||.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 55679999999998532 58899999999997 79999999999885 99 89999999999
Q ss_pred cCCCcc-ccc-cchhhhhhhhhccccccCCC--ccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcC
Q 001430 595 DGIDRN-DRY-ANRNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (1079)
Q Consensus 595 ~nid~~-Dry-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1079)
.|.+.. .+. +-.+..|..+.+.|++.+++ .+|+||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-------------~--------------- 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-------------C--------------- 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-------------c---------------
Confidence 987642 221 11356677778888887654 688999999999998421 0
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHH
Q 001430 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (1079)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 750 (1079)
.+.++||+.
T Consensus 188 ------------------------------------------------------------~~~~i~g~g----------- 196 (254)
T cd04191 188 ------------------------------------------------------------ALPVLPGRP----------- 196 (254)
T ss_pred ------------------------------------------------------------CCccccCCC-----------
Confidence 001234321
Q ss_pred HHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchh
Q 001430 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 827 (1079)
Q Consensus 751 a~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQ 827 (1079)
||..++++||+++|++++.+||+++|.+... +.++++|+|++++++||.||++|++|
T Consensus 197 -------------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~-~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -------------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLE-GSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -------------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCc-ceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 4666899999999999999999999995433 23789999999999999999999987
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.5e-30 Score=297.44 Aligned_cols=233 Identities=29% Similarity=0.423 Sum_probs=170.7
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCch
Q 001430 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427 (1079)
Q Consensus 348 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe 427 (1079)
+|.|||+||+|| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+. +++.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~--------------~~~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILE--------------ELGA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHH--------------HHHh------
Confidence 699999999998 99999999999999999995 7899999999874444211 1110
Q ss_pred hhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCC
Q 001430 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 507 (1079)
Q Consensus 428 ~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~ 507 (1079)
+ ++..++
T Consensus 108 ------------------------------~-----------------------------------~~~~~~-------- 114 (439)
T COG1215 108 ------------------------------E-----------------------------------YGPNFR-------- 114 (439)
T ss_pred ------------------------------h-----------------------------------cCcceE--------
Confidence 0 000001
Q ss_pred CCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEE
Q 001430 508 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 587 (1079)
Q Consensus 508 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~ 587 (1079)
++|. ++ .++.|+||+|.++.. +.+|+|+++|||++ +.+++|++++..|.|+. .++.
T Consensus 115 ----------~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 115 ----------VIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ----------EEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 1211 22 678899999999987 56999999999997 89999999999999885 3479
Q ss_pred EecCccccCCCccccccchhhhhhh-----hhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCC
Q 001430 588 VQFPQRFDGIDRNDRYANRNTVFFD-----INLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 662 (1079)
Q Consensus 588 VQ~PQ~F~nid~~Dry~n~~~vFfd-----i~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 662 (1079)
+|.||.+.+.++.........+.|. ....+.++....++.|
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G---------------------------------- 216 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSG---------------------------------- 216 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcc----------------------------------
Confidence 9999999887641111111111111 1111222223334444
Q ss_pred cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCc
Q 001430 663 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 742 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~ 742 (1079)
++..||+++|++.||
T Consensus 217 ------------------------------------------------------------~~~~~rr~aL~~~g~----- 231 (439)
T COG1215 217 ------------------------------------------------------------SSSAFRRSALEEVGG----- 231 (439)
T ss_pred ------------------------------------------------------------eeeeEEHHHHHHhCC-----
Confidence 444555555567775
Q ss_pred chhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhh
Q 001430 743 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 822 (1079)
Q Consensus 743 ~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA 822 (1079)
|...++|||.+++++|+.+|||+.|++++ .+++++|+|+.++++||.||+
T Consensus 232 ----------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~ 281 (439)
T COG1215 232 ----------------------------WLEDTITEDADLTLRLHLRGYRVVYVPEA--IVWTEAPETLKELWRQRLRWA 281 (439)
T ss_pred ----------------------------CCCCceeccHHHHHHHHHCCCeEEEeecc--eEeeeCcccHHHHHHHHHHHH
Confidence 44579999999999999999999999654 349999999999999999999
Q ss_pred ccchhHhhh
Q 001430 823 LGSVEILFS 831 (1079)
Q Consensus 823 ~G~lQIll~ 831 (1079)
+|++|++..
T Consensus 282 ~g~~~~~~~ 290 (439)
T COG1215 282 RGGLQVLLL 290 (439)
T ss_pred cccceeeeh
Confidence 999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=6.1e-28 Score=280.79 Aligned_cols=232 Identities=21% Similarity=0.231 Sum_probs=165.6
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001430 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 346 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 425 (1079)
...|.|+|+||+|| |+. .+.+|+.|+++++|| ++.++|.|||.++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999998 875 568999999999999 589999999987633322111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccC
Q 001430 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~ 505 (1079)
++++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCce
Q 001430 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (1079)
Q Consensus 506 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~ 584 (1079)
.|++.++.++++ ..||+|+|++++. +++|||+++|+|++ ++|++|++.+..| .|| +
T Consensus 129 ---------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 123555555442 2499999999986 68999999999997 7999999999755 577 7
Q ss_pred EEEEecCccccCCCcc-ccc-cchhhhhhhhhccccccCCCccc-cccCchhhhhhhcCCCCCCCCCCCCCCCcccccCC
Q 001430 585 VCYVQFPQRFDGIDRN-DRY-ANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGG 661 (1079)
Q Consensus 585 v~~VQ~PQ~F~nid~~-Dry-~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~ 661 (1079)
++.||..++..|.+.. .+. ..+...++....++.+-.+..+. .|+++
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~------------------------------ 235 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVA------------------------------ 235 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCcee------------------------------
Confidence 9999998776543211 111 01122233333333332222221 13333
Q ss_pred CcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCC
Q 001430 662 SRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQS 741 (1079)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~ 741 (1079)
.||+++++++||+
T Consensus 236 ----------------------------------------------------------------~~rr~al~~vGg~--- 248 (444)
T PRK14583 236 ----------------------------------------------------------------AFRRRALADVGYW--- 248 (444)
T ss_pred ----------------------------------------------------------------EEEHHHHHHcCCC---
Confidence 4555555677864
Q ss_pred cchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHh
Q 001430 742 ATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRW 821 (1079)
Q Consensus 742 ~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RW 821 (1079)
..+.++||++++++|+.+||++.|++.. .+++++|+|++++++||.||
T Consensus 249 ------------------------------~~~~i~ED~dl~~rl~~~G~~i~~~p~a--~~~~~~p~t~~~~~~Qr~RW 296 (444)
T PRK14583 249 ------------------------------SPDMITEDIDISWKLQLKHWSVFFEPRG--LCWILMPETLRGLWKQRLRW 296 (444)
T ss_pred ------------------------------CCCcccccHHHHHHHHHcCCeEEEeecc--EEeeeCCCCHHHHHHHHHHH
Confidence 4468999999999999999999999643 34999999999999999999
Q ss_pred hccchhHhhhc
Q 001430 822 ALGSVEILFSR 832 (1079)
Q Consensus 822 A~G~lQIll~k 832 (1079)
++|.+|+++++
T Consensus 297 ~~G~~~~~~~~ 307 (444)
T PRK14583 297 AQGGAEVFLKN 307 (444)
T ss_pred hCcHHHHHHHH
Confidence 99999999864
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=3e-27 Score=274.91 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=191.4
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001430 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 424 (1079)
++.+|.|+|+||+|| |. ..+.+||.|+++++||.+++.|+|.|||.++-|.+.+.|+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467899999999998 76 7899999999999999999999999999987444422211
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001430 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~ 504 (1079)
.++ +
T Consensus 102 ------------------------------------------~~~------------------------~---------- 105 (439)
T TIGR03111 102 ------------------------------------------QNE------------------------F---------- 105 (439)
T ss_pred ------------------------------------------HHh------------------------C----------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 001430 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~-Dp~~g~ 583 (1079)
|++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ +++++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 111 121111 124699999999997 68999999999998 79999999998775 77
Q ss_pred eEEEEecCccccCCCcccc-------ccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcc
Q 001430 584 HVCYVQFPQRFDGIDRNDR-------YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLS 656 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~nid~~Dr-------y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~ 656 (1079)
+++.|+..+.- +.+..+. +..++. +++... ..+.|. +... ..+.
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~y~~--------------------~~l~~r-~~~s--~~~~---- 211 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKGRFLKLIRRCE-YFEYAQ--------------------AFLAGR-NFES--QVNS---- 211 (439)
T ss_pred CeEEEEeEEec-CchhhhhhcchhhhHhHHhH-HHHHHH--------------------HHHhhh-HHHH--hcCC----
Confidence 56666554321 1110000 000000 000000 000000 0000 0000
Q ss_pred cccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcC
Q 001430 657 SLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENG 736 (1079)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G 736 (1079)
.---.|....||++++++.|
T Consensus 212 ------------------------------------------------------------~~~~sGa~~~~Rr~~l~~vg 231 (439)
T TIGR03111 212 ------------------------------------------------------------LFTLSGAFSAFRRETILKTQ 231 (439)
T ss_pred ------------------------------------------------------------eEEEccHHHhhhHHHHHHhC
Confidence 00012556688999999999
Q ss_pred CCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHH-CCCEEEEeCCCCCcccccCCCCHHHHH
Q 001430 737 GVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHA-RGWRSIYCMPKRPAFKGSAPINLSDRL 815 (1079)
Q Consensus 737 G~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~-rGWrsvY~~p~~~af~G~aPetl~~~l 815 (1079)
|++. .+++||++++++++. .|+++.|+.+ +.++.++|+|+++++
T Consensus 232 gf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~--a~~~~~~p~t~~~~~ 276 (439)
T TIGR03111 232 LYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCEN--AIFYVDPIDGLNKLY 276 (439)
T ss_pred CCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCC--CEEEEECCcCHHHHH
Confidence 8664 689999999999975 6999999954 345899999999999
Q ss_pred HHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcc
Q 001430 816 NQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFI 882 (1079)
Q Consensus 816 kQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~l~Ll~G~~i 882 (1079)
+||.||++|.+|++.....+.. ..+.++.+++.+......+...+|.+++.++++++.++|..+
T Consensus 277 ~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (439)
T TIGR03111 277 TQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPV 340 (439)
T ss_pred HHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHH
Confidence 9999999999999975433333 344666666655455555666778788888888887776443
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=8.8e-27 Score=267.56 Aligned_cols=236 Identities=25% Similarity=0.310 Sum_probs=167.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001430 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 424 (1079)
....|.|.|+||+|| |+ ..+.+|+.|+++++|| ++.++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 356899999999998 75 6789999999999999 67899999998763222111
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001430 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~ 504 (1079)
+ +++
T Consensus 103 ---------------------------------~-------~~~------------------------------------ 106 (420)
T PRK11204 103 ---------------------------------R-------LAA------------------------------------ 106 (420)
T ss_pred ---------------------------------H-------HHH------------------------------------
Confidence 1 110
Q ss_pred CCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 001430 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 583 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~ 583 (1079)
+.|++.++.++++. .||+|+|.+++. +++|||+++|+|.+ +.|++|++++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 01347777766533 399999999996 68999999999997 7999999999877 588
Q ss_pred eEEEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 001430 584 HVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 663 (1079)
+++.||...+..|... ..+..+...|... . |..-+-+.++|..
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~--------------------- 206 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSI------------I--GLIKRAQRVYGRV--------------------- 206 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHh------------h--hHHHHHHHHhCCc---------------------
Confidence 8999999877665321 1111000001000 0 0000001111100
Q ss_pred ccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcc
Q 001430 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 743 (1079)
..--|.+..||+++++++||+.+
T Consensus 207 ------------------------------------------------------~~~~G~~~~~rr~~l~~vgg~~~--- 229 (420)
T PRK11204 207 ------------------------------------------------------FTVSGVITAFRKSALHEVGYWST--- 229 (420)
T ss_pred ------------------------------------------------------eEecceeeeeeHHHHHHhCCCCC---
Confidence 00013445677777788887544
Q ss_pred hhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001430 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 744 ~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~ 823 (1079)
..++||++++++++.+||++.|+++. .++++.|+|++++++||.||++
T Consensus 230 ------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~~--~~~~~~p~t~~~~~~Qr~RW~~ 277 (420)
T PRK11204 230 ------------------------------DMITEDIDISWKLQLRGWDIRYEPRA--LCWILMPETLKGLWKQRLRWAQ 277 (420)
T ss_pred ------------------------------CcccchHHHHHHHHHcCCeEEecccc--EEEeECcccHHHHHHHHHHHhc
Confidence 67899999999999999999999543 3499999999999999999999
Q ss_pred cchhHhhhc
Q 001430 824 GSVEILFSR 832 (1079)
Q Consensus 824 G~lQIll~k 832 (1079)
|++|.++++
T Consensus 278 G~~~~l~~~ 286 (420)
T PRK11204 278 GGAEVLLKN 286 (420)
T ss_pred CHHHHHHHH
Confidence 999999854
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=1.5e-24 Score=255.57 Aligned_cols=265 Identities=20% Similarity=0.227 Sum_probs=179.0
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001430 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 347 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 425 (1079)
..|.|+|+||.+| |. .++.+||.|++ ++||| ++.|+|.||+..+-|.+.+.|.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999998 86 78999999975 78996 7999999998887544432221
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccC
Q 001430 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~ 505 (1079)
++ .||+
T Consensus 118 -----------------------------------------~~------------------------~~p~--------- 123 (504)
T PRK14716 118 -----------------------------------------AA------------------------RYPR--------- 123 (504)
T ss_pred -----------------------------------------HH------------------------HCCC---------
Confidence 10 1222
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhc--ccCCC---CEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 001430 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSA--VLTNG---PFLLNLDCDHYINNSKALREAMCFMMDPN 580 (1079)
Q Consensus 506 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa--vltng---p~il~lDcDh~i~~~~~Lr~amcff~Dp~ 580 (1079)
+..+. .+++| .+.||+|||.+++..- -...| ++|+++|||.+ ++|++|+....++.|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 22111 12222 3579999999987521 01234 99999999998 799999986555544
Q ss_pred CCceEEEEecCccccCCCcccc----ccchhhhhhhhhccccccCCCcc-ccccCchhhhhhhcCCCCCCCCCCCCCCCc
Q 001430 581 LGKHVCYVQFPQRFDGIDRNDR----YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGLL 655 (1079)
Q Consensus 581 ~g~~v~~VQ~PQ~F~nid~~Dr----y~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~ 655 (1079)
.++||.|....+.+.+.- |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 468999987665433322 22222222333456667777654 678888888888720
Q ss_pred ccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhc
Q 001430 656 SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMEN 735 (1079)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 735 (1079)
...+.
T Consensus 247 ---------------------------------------------------------------------------l~~~~ 251 (504)
T PRK14716 247 ---------------------------------------------------------------------------LAAER 251 (504)
T ss_pred ---------------------------------------------------------------------------HHhhc
Confidence 00122
Q ss_pred CCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCC-------------Cc
Q 001430 736 GGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR-------------PA 802 (1079)
Q Consensus 736 GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~-------------~a 802 (1079)
||. +|..+++|||+++|++++.+|||++|++.+. .+
T Consensus 252 GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~ 300 (504)
T PRK14716 252 GGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIA 300 (504)
T ss_pred CCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccc
Confidence 431 2666899999999999999999999996431 12
Q ss_pred ccccCCCCHHHHHHHHHHhhccc-hhHhhhcc--cccccccCCCCCcccchhhhhhhh
Q 001430 803 FKGSAPINLSDRLNQVLRWALGS-VEILFSRH--CPIWYGYGGRLKFLERFAYVNTTI 857 (1079)
Q Consensus 803 f~G~aPetl~~~lkQR~RWA~G~-lQIll~k~--~PL~~g~~~~Lt~~QRL~Yl~~~l 857 (1079)
+++++|+|++++++||.||+.|- +|...+.- .++. .+.+.|++|.+.+...+
T Consensus 301 t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 301 TREFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred ccccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 35889999999999999999994 78865321 1111 23467788887766544
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=8e-25 Score=228.04 Aligned_cols=229 Identities=37% Similarity=0.588 Sum_probs=174.3
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001430 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 428 (1079)
|.|.|+||||| |++..+..++.|+++.+||.+++.++|.|||.+.-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999998 8888999999999999999988999999999875222110
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001430 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~ 508 (1079)
+++..+
T Consensus 52 -----------------------------------~~~~~~--------------------------------------- 57 (234)
T cd06421 52 -----------------------------------AELGVE--------------------------------------- 57 (234)
T ss_pred -----------------------------------HHhhcc---------------------------------------
Confidence 011000
Q ss_pred CCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC-CCCCceEEE
Q 001430 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-PNLGKHVCY 587 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~D-p~~g~~v~~ 587 (1079)
.++.|+.+++ +...|+||+|++++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0256666665 445699999999996 58999999999998 689999999998876 7 7999
Q ss_pred EecCccccCCCccc----cccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 001430 588 VQFPQRFDGIDRND----RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (1079)
Q Consensus 588 VQ~PQ~F~nid~~D----ry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 663 (1079)
||+++.+.+.+..+ .+......|+.....+........+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998776542 2233344455544444444444555555555555544
Q ss_pred ccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcc
Q 001430 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 743 (1079)
+++||++.
T Consensus 173 ---------------------------------------------------------------------~~ig~~~~--- 180 (234)
T cd06421 173 ---------------------------------------------------------------------DEIGGFPT--- 180 (234)
T ss_pred ---------------------------------------------------------------------HHhCCCCc---
Confidence 56787654
Q ss_pred hhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001430 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 744 ~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~ 823 (1079)
..+.||++++++++.+||+++|++... +++..|.+++++++||.||.+
T Consensus 181 ------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~ 228 (234)
T cd06421 181 ------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPL--AAGLAPETLAAYIKQRLRWAR 228 (234)
T ss_pred ------------------------------cceeccHHHHHHHHHcCceEEEecCcc--ccccCCccHHHHHHHHHHHhc
Confidence 467899999999999999999996543 489999999999999999999
Q ss_pred cchhHh
Q 001430 824 GSVEIL 829 (1079)
Q Consensus 824 G~lQIl 829 (1079)
|++|++
T Consensus 229 ~~~~~~ 234 (234)
T cd06421 229 GMLQIL 234 (234)
T ss_pred CCeeeC
Confidence 999864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=6e-24 Score=259.48 Aligned_cols=198 Identities=19% Similarity=0.302 Sum_probs=133.5
Q ss_pred CchhhhHHHHHHHhccc---CCC--CEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCcccc----
Q 001430 532 HKKAGAMNALVRVSAVL---TNG--PFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDR---- 602 (1079)
Q Consensus 532 h~KAGalNallrvSavl---tng--p~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dr---- 602 (1079)
+.||+|||.++....-. +.+ +.++++|||.+ ++|++|+ .+.+|+++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 46999999999863111 133 46888999997 7999998 67888887 4 89999966333222221
Q ss_pred ccchhhhhhhhhccccccCCCc-cccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCC
Q 001430 603 YANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSK 681 (1079)
Q Consensus 603 y~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1079)
|..+....+...+++++.++|+ .+.|+|++|+|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 2233334455667888888664 45678888844433
Q ss_pred CCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcC-CCCCCcchhhHHHHHHHhhccccc
Q 001430 682 HVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENG-GVPQSATHETLLKEAIHVISCGYE 760 (1079)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~p~~~~~~~~~~ea~~v~sC~Ye 760 (1079)
+++.+.| |+
T Consensus 242 ------------------------------------------------~al~~~ggg~---------------------- 251 (727)
T PRK11234 242 ------------------------------------------------TALLEDGDGI---------------------- 251 (727)
T ss_pred ------------------------------------------------HHHHHhcCCC----------------------
Confidence 1234455 42
Q ss_pred ccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCC---------------------CcccccCCCCHHHHHHHHH
Q 001430 761 DKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR---------------------PAFKGSAPINLSDRLNQVL 819 (1079)
Q Consensus 761 ~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~---------------------~af~G~aPetl~~~lkQR~ 819 (1079)
||..+++|||+++|++|+.+||+++|++... .++++..|+|+++.++||.
T Consensus 252 ---------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~ 322 (727)
T PRK11234 252 ---------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKS 322 (727)
T ss_pred ---------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHH
Confidence 4788999999999999999999999996111 3367888999999999999
Q ss_pred Hhhcc-chhHhhhccccccccc--CCCCCcccchhhhhhhhhhhh
Q 001430 820 RWALG-SVEILFSRHCPIWYGY--GGRLKFLERFAYVNTTIYPLT 861 (1079)
Q Consensus 820 RWA~G-~lQIll~k~~PL~~g~--~~~Lt~~QRL~Yl~~~ly~l~ 861 (1079)
||.+| .+|.+.... |.+. .+-+.|+.|-.++..++..+.
T Consensus 323 RW~~G~~~q~~~~~~---w~~~~~~~~~~~r~r~~~~~~~~s~~~ 364 (727)
T PRK11234 323 RWIIGIVFQGFKTLG---WTSSLTLNYFLWRDRKGAITNFVSFLA 364 (727)
T ss_pred HHHcccHHHHHHHhC---CCcchhhhhhhHHhhhHHHHHHHHHHH
Confidence 99999 688875321 2110 122455666555554443333
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=3.1e-24 Score=226.03 Aligned_cols=229 Identities=22% Similarity=0.340 Sum_probs=162.6
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001430 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 428 (1079)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| .+.-|++.+.+.
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~----------------------- 52 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI----------------------- 52 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH-----------------------
Confidence 57999999998 75 678999999999999999999999998 555444432211
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001430 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~ 508 (1079)
..+++
T Consensus 53 ---------------------------~~~~~------------------------------------------------ 57 (232)
T cd06437 53 ---------------------------VEEYA------------------------------------------------ 57 (232)
T ss_pred ---------------------------HHHHh------------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001430 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~V 588 (1079)
+.-+++.++.+.+++|+ |++|+|++++. .+++||+++|+|.+ ++|++|+++..++.|| ++++|
T Consensus 58 ----~~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 58 ----AQGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred ----hcCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 00135788888876665 99999999986 58999999999998 6999999977888888 79999
Q ss_pred ecCccccCCCccc--ccc-chhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCccc
Q 001430 589 QFPQRFDGIDRND--RYA-NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 665 (1079)
Q Consensus 589 Q~PQ~F~nid~~D--ry~-n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 665 (1079)
|....+.+.+.+- ++. -....+|.+.+.+.......+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 160 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFF---------------------------------------- 160 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeE----------------------------------------
Confidence 9987665543220 000 000011111111111110000
Q ss_pred CCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchh
Q 001430 666 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 745 (1079)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~ 745 (1079)
.-.|+...||+++++++||++.
T Consensus 161 -----------------------------------------------------~~~g~~~~~rr~~~~~vgg~~~----- 182 (232)
T cd06437 161 -----------------------------------------------------NFNGTAGVWRKECIEDAGGWNH----- 182 (232)
T ss_pred -----------------------------------------------------EeccchhhhhHHHHHHhCCCCC-----
Confidence 0014445677777888998764
Q ss_pred hHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001430 746 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (1079)
Q Consensus 746 ~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~ 825 (1079)
.++.||+++++||+.+||+++|++. . .++...|+|+.++++||+||++|.
T Consensus 183 ----------------------------~~~~ED~~l~~rl~~~G~~~~~~~~-~-~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 ----------------------------DTLTEDLDLSYRAQLKGWKFVYLDD-V-VVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ----------------------------CcchhhHHHHHHHHHCCCeEEEecc-c-eeeeeCCcCHHHHHHHHHHhccCC
Confidence 4678999999999999999999953 3 358999999999999999999984
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.90 E-value=1.1e-22 Score=213.86 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=121.3
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCC
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 597 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~ni 597 (1079)
+.++..++.+| .|+||+|.+++.+. .+++||+.+|+|-. ..|++|.+++.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 56666665445 49999999998742 46899999999986 7999999999998877 79999998765432
Q ss_pred Cccccccc----hhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccC
Q 001430 598 DRNDRYAN----RNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKG 673 (1079)
Q Consensus 598 d~~Dry~n----~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1079)
.. ..+.- ....+|...+......+..+..
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 159 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQH---------------------------------------------- 159 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEe----------------------------------------------
Confidence 11 11100 0001111111111111111122
Q ss_pred CCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHH
Q 001430 674 SDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIH 753 (1079)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~ 753 (1079)
|+...|+++++.++||++.
T Consensus 160 ------------------------------------------------g~~~~~rr~~~~~iGgf~~------------- 178 (236)
T cd06435 160 ------------------------------------------------GTMCLIRRSALDDVGGWDE------------- 178 (236)
T ss_pred ------------------------------------------------cceEEEEHHHHHHhCCCCC-------------
Confidence 3333556666778898754
Q ss_pred hhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhh
Q 001430 754 VISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFS 831 (1079)
Q Consensus 754 v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQIll~ 831 (1079)
....||++++++++.+||++.|++... .+...|.++.++++||+||++|++|++.+
T Consensus 179 --------------------~~~~eD~dl~~r~~~~G~~~~~~~~~~--~~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 --------------------WCITEDSELGLRMHEAGYIGVYVAQSY--GHGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred --------------------ccccchHHHHHHHHHCCcEEEEcchhh--ccCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 457899999999999999999996433 38999999999999999999999999974
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=7.6e-23 Score=217.55 Aligned_cols=231 Identities=25% Similarity=0.312 Sum_probs=164.2
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001430 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 428 (1079)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||.+.-|.+.+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999998 86 788999999999999988999999999987643332110
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001430 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~ 508 (1079)
+. . +
T Consensus 53 -------------------------------------~~-~----~---------------------------------- 56 (241)
T cd06427 53 -------------------------------------LR-L----P---------------------------------- 56 (241)
T ss_pred -------------------------------------hc-c----C----------------------------------
Confidence 00 0 0
Q ss_pred CCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc--CCCCCceEE
Q 001430 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM--DPNLGKHVC 586 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~--Dp~~g~~v~ 586 (1079)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..+++|.+++.+|. ++ +++
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~~~----~v~ 117 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARLDD----KLA 117 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhcCC----CEE
Confidence 001244444332 12599999999996 68999999999998 68999999999886 24 899
Q ss_pred EEecCccccCCCccc--c-ccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCc
Q 001430 587 YVQFPQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 663 (1079)
Q Consensus 587 ~VQ~PQ~F~nid~~D--r-y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 663 (1079)
+||.+..+++...+- + +......+|+..+++....+.+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 160 (241)
T cd06427 118 CVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIP------------------------------------- 160 (241)
T ss_pred EEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeee-------------------------------------
Confidence 999988877543210 0 000111112222222221111110
Q ss_pred ccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcc
Q 001430 664 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 743 (1079)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 743 (1079)
..|+...|++++++++||+..
T Consensus 161 --------------------------------------------------------~~g~~~~~rr~~~~~vgg~~~--- 181 (241)
T cd06427 161 --------------------------------------------------------LGGTSNHFRTDVLRELGGWDP--- 181 (241)
T ss_pred --------------------------------------------------------cCCchHHhhHHHHHHcCCCCc---
Confidence 124445677777888898643
Q ss_pred hhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001430 744 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 744 ~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~ 823 (1079)
...+||+++++|++.+||+++|++ .. ++...|+|++++++||.||++
T Consensus 182 ------------------------------~~~~eD~~l~~rl~~~G~r~~~~~-~~--~~~~~~~~~~~~~~q~~Rw~~ 228 (241)
T cd06427 182 ------------------------------FNVTEDADLGLRLARAGYRTGVLN-ST--TLEEANNALGNWIRQRSRWIK 228 (241)
T ss_pred ------------------------------ccchhhHHHHHHHHHCCceEEEec-cc--ccccCcHhHHHHHHHHHHHhc
Confidence 467899999999999999999994 33 378999999999999999999
Q ss_pred cchhHhhh
Q 001430 824 GSVEILFS 831 (1079)
Q Consensus 824 G~lQIll~ 831 (1079)
|.+|++..
T Consensus 229 g~~~~~~~ 236 (241)
T cd06427 229 GYMQTWLV 236 (241)
T ss_pred cHHHHHHH
Confidence 99999974
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.87 E-value=8.1e-23 Score=213.35 Aligned_cols=224 Identities=30% Similarity=0.440 Sum_probs=133.6
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001430 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 428 (1079)
|.|.|+||++| |+ ..+..|+.|+++++|| ++.++|+||+...-|.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 77999999998 76 4999999999999995 5999999999875222111
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001430 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~ 508 (1079)
+++++. .|.
T Consensus 49 -----------------------------------~~~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR---YPR--------------------------------- 57 (228)
T ss_dssp -----------------------------------HHHHHT---TGG---------------------------------
T ss_pred -----------------------------------HHHHHH---cCC---------------------------------
Confidence 111111 000
Q ss_pred CCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE
Q 001430 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~V 588 (1079)
-++.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0266777665322 23699999999997 46999999999998 6999999999988888 89999
Q ss_pred ecCccccCCCccccccchhhhhhhh----hccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcc
Q 001430 589 QFPQRFDGIDRNDRYANRNTVFFDI----NLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 664 (1079)
Q Consensus 589 Q~PQ~F~nid~~Dry~n~~~vFfdi----~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~ 664 (1079)
|++..+++ +.+ .+..-...++.. ...+....+.+.+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 322 111111122111 1222233333444555555555544
Q ss_pred cCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcch
Q 001430 665 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 744 (1079)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 744 (1079)
+++||+..
T Consensus 172 --------------------------------------------------------------------~~~g~fd~---- 179 (228)
T PF13641_consen 172 --------------------------------------------------------------------EEVGGFDP---- 179 (228)
T ss_dssp --------------------------------------------------------------------HHH-S--S----
T ss_pred --------------------------------------------------------------------HHhCCCCC----
Confidence 56776543
Q ss_pred hhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001430 745 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 745 ~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G 824 (1079)
..+.||+++++++..+||+++|++.. .++...|.+++++++||.||++|
T Consensus 180 -----------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~--~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 -----------------------------FILGEDFDLCLRLRAAGWRIVYAPDA--LVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp -----------------------------SSSSHHHHHHHHHHHTT--EEEEEEE--EEEE--SSSTHHHHHHHHHHH--
T ss_pred -----------------------------CCcccHHHHHHHHHHCCCcEEEECCc--EEEEeCCCCHHHHHHHHhccCcC
Confidence 47789999999999999999999532 35899999999999999999987
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.84 E-value=2.3e-19 Score=204.74 Aligned_cols=235 Identities=17% Similarity=0.212 Sum_probs=157.1
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001430 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 346 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 425 (1079)
...|+|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.+.-|.+.+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34899999999998 875 5679999999999995 7899999987653322111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccC
Q 001430 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~ 505 (1079)
+++++ ||.
T Consensus 90 ---------------------------------------~~~~~------------------------~p~--------- 97 (373)
T TIGR03472 90 ---------------------------------------RLRAD------------------------FPD--------- 97 (373)
T ss_pred ---------------------------------------HHHHh------------------------CCC---------
Confidence 11100 110
Q ss_pred CCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceE
Q 001430 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHV 585 (1079)
Q Consensus 506 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v 585 (1079)
.++.++.+.++.| .+.|++|+|++++. +.+|+|+.+|+|.+ +.|++|++++..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1356664444333 45799999998876 68999999999997 6999999999999998 78
Q ss_pred EEEecCccccCCCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCccc
Q 001430 586 CYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 665 (1079)
Q Consensus 586 ~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 665 (1079)
+.|+.+.+..+ ... +.++.... ..+.. ++-+. ... ...|-
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~~------~~~~~---~~~~~--~~~--~~~~~------------------------ 196 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGAM------GINHN---FLPSV--MVA--RALGR------------------------ 196 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHHH------Hhhhh---hhHHH--HHH--HhccC------------------------
Confidence 99998644221 111 11111000 00000 00000 000 00000
Q ss_pred CCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchh
Q 001430 666 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 745 (1079)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~ 745 (1079)
.....|++..||+++++++||++..
T Consensus 197 ---------------------------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~---- 221 (373)
T TIGR03472 197 ---------------------------------------------------ARFCFGATMALRRATLEAIGGLAAL---- 221 (373)
T ss_pred ---------------------------------------------------CccccChhhheeHHHHHHcCChHHh----
Confidence 0012467778889999999997631
Q ss_pred hHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001430 746 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (1079)
Q Consensus 746 ~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~ 825 (1079)
..+++||++++.++..+||++.|.+.. ..+...|+|++++++||.||++..
T Consensus 222 ---------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~--v~~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 ---------------------------AHHLADDYWLGELVRALGLRVVLAPVV--VDTDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred ---------------------------cccchHHHHHHHHHHHcCCeEEecchh--hhcCCCccCHHHHHHHHHHHHhhh
Confidence 146789999999999999999998543 336788899999999999997543
No 28
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.83 E-value=1.4e-18 Score=210.84 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=124.2
Q ss_pred CchhhhHHHHHHHh---cccCCCCE--EEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCcc-ccCCCcc---cc
Q 001430 532 HKKAGAMNALVRVS---AVLTNGPF--LLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR-FDGIDRN---DR 602 (1079)
Q Consensus 532 h~KAGalNallrvS---avltngp~--il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~-F~nid~~---Dr 602 (1079)
..||.|||.++... .-.+.++| |+++|||-+ ++|++|+. |-++++. + -+||.|-. ..|...+ .-
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHHH
Confidence 45999999988752 11234555 999999997 89999986 5666643 1 36998732 1221111 22
Q ss_pred ccchhhhhhhhhccccccCCCccc-cccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCC
Q 001430 603 YANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSK 681 (1079)
Q Consensus 603 y~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1079)
|+.+....|+..|+++..+.+++. -|||++|||.||--
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~----------------------------------------- 251 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA----------------------------------------- 251 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH-----------------------------------------
Confidence 666777778888999988888776 46899999998820
Q ss_pred CCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccc
Q 001430 682 HVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYED 761 (1079)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~ 761 (1079)
+.+.||-
T Consensus 252 --------------------------------------------------l~~~gg~----------------------- 258 (703)
T PRK15489 252 --------------------------------------------------LMKERGN----------------------- 258 (703)
T ss_pred --------------------------------------------------HHHhcCC-----------------------
Confidence 1123431
Q ss_pred cCccccccCcccccccchHHHHHHHHHCCCEEEEeCC---------------------CCCcccccCCCCHHHHHHHHHH
Q 001430 762 KTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP---------------------KRPAFKGSAPINLSDRLNQVLR 820 (1079)
Q Consensus 762 ~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p---------------------~~~af~G~aPetl~~~lkQR~R 820 (1079)
.+|..+++|||+++|+||+.+|||+.|+.- ...+.+...|.|+.+.++||.|
T Consensus 259 -------~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~R 331 (703)
T PRK15489 259 -------QPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKAR 331 (703)
T ss_pred -------CCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHH
Confidence 147789999999999999999999999321 1235578899999999999999
Q ss_pred hhccch-hHhh
Q 001430 821 WALGSV-EILF 830 (1079)
Q Consensus 821 WA~G~l-QIll 830 (1079)
|..|-. |-..
T Consensus 332 W~~Gi~~q~~~ 342 (703)
T PRK15489 332 WVLGIAFQGWE 342 (703)
T ss_pred HHhHHHHhhHH
Confidence 999986 7754
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.83 E-value=1.7e-20 Score=201.30 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=46.6
Q ss_pred ccccchHHHHHHHHHCCCEEEE--eCCCCCcccccCCCCHHHHHHHHHHhhccchh
Q 001430 774 GSVTEDILTGFKMHARGWRSIY--CMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 827 (1079)
Q Consensus 774 gsVTED~~tg~rL~~rGWrsvY--~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQ 827 (1079)
.+++||++++++|..+||++.| ++.. .++.++|+|++++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~a--~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPGA--VAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEeccc--EEEEECCCCHHHHHHHhHhhhccccc
Confidence 5799999999999999999999 7443 34999999999999999999999864
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=5.1e-19 Score=183.23 Aligned_cols=226 Identities=17% Similarity=0.207 Sum_probs=152.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001430 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (1079)
Q Consensus 353 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~ 432 (1079)
|+|||+| |+ ..+.+||.|++..+||.+++.|+|.|||.+.-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 65 78999999999999999889999999998753222110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCCCCCC
Q 001430 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (1079)
Q Consensus 433 k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~ 512 (1079)
|. + +
T Consensus 48 -----------------------~~--------~--~------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------A--A------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------H--h-------------------------------------------
Confidence 00 0 0
Q ss_pred CCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCc
Q 001430 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 592 (1079)
Q Consensus 513 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ 592 (1079)
...|++.++.++. + .-..|+.++|.++.. ++++||+++|+|.+ +.|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555443 1 235689999999986 58999999999997 6899999999977665 577888888
Q ss_pred cccCCCcc-ccccchhhhhhhhhccccccCCCc-cccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcC
Q 001430 593 RFDGIDRN-DRYANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 670 (1079)
Q Consensus 593 ~F~nid~~-Dry~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1079)
.+...+.. ..+..-...+......+.-+++.+ ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 155 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMC-------------------------------------------- 155 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcccc--------------------------------------------
Confidence 77622211 111100000000011111111111 11
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHH
Q 001430 671 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 750 (1079)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 750 (1079)
.|.+..|+++++.++||++..
T Consensus 156 --------------------------------------------------~g~~~~~rr~~~~~~ggf~~~--------- 176 (229)
T cd04192 156 --------------------------------------------------NGANMAYRKEAFFEVGGFEGN--------- 176 (229)
T ss_pred --------------------------------------------------ccceEEEEHHHHHHhcCCccc---------
Confidence 133335566677788987641
Q ss_pred HHHhhcccccccCccccccCcccccccchHHHHHHHHHCCC-EEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001430 751 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGW-RSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 751 a~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGW-rsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G 824 (1079)
....+||.++.+++..+|| ++.|+..+...++...|.+++++++||+||++|
T Consensus 177 ----------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ----------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ----------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2467899999999999999 999875444445899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.79 E-value=1.6e-18 Score=178.88 Aligned_cols=124 Identities=20% Similarity=0.232 Sum_probs=100.2
Q ss_pred CchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhh
Q 001430 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFF 611 (1079)
Q Consensus 532 h~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFf 611 (1079)
..|++|+|.+++. .+++|++++|+|.. ..|++|.+.+..+.+| +++.|+..
T Consensus 72 ~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~-------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLVTCL-------------------- 122 (196)
T ss_pred CHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeEEee--------------------
Confidence 3689999999986 68999999999997 6899999999988888 57777764
Q ss_pred hhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCcccc
Q 001430 612 DINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFS 691 (1079)
Q Consensus 612 di~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1079)
...|+++++||+++
T Consensus 123 -------------~~~g~~~~~r~~~~----------------------------------------------------- 136 (196)
T cd02520 123 -------------CAFGKSMALRREVL----------------------------------------------------- 136 (196)
T ss_pred -------------cccCceeeeEHHHH-----------------------------------------------------
Confidence 34566777777665
Q ss_pred chhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCc
Q 001430 692 LEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGW 771 (1079)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW 771 (1079)
+++||++.
T Consensus 137 -----------------------------------------~~~ggf~~------------------------------- 144 (196)
T cd02520 137 -----------------------------------------DAIGGFEA------------------------------- 144 (196)
T ss_pred -----------------------------------------HhccChHH-------------------------------
Confidence 34566532
Q ss_pred ccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001430 772 IYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 824 (1079)
Q Consensus 772 ~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G 824 (1079)
....+.||+++++++..+||+++|+... .++...|.+++++++||.||++.
T Consensus 145 ~~~~~~eD~~l~~rl~~~G~~i~~~~~~--~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLGYRVVLSPYV--VMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred HhHHHHHHHHHHHHHHHcCCeEEEcchh--eeccCCcccHHHHHHHHHHHhcc
Confidence 0134689999999999999999999543 34899999999999999999874
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.77 E-value=1.5e-17 Score=174.33 Aligned_cols=58 Identities=26% Similarity=0.169 Sum_probs=51.5
Q ss_pred CchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCC
Q 001430 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 598 (1079)
Q Consensus 532 h~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid 598 (1079)
..|++|+|.+++. +.++||+++|+|.+ +.+++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 3499999999986 58999999999997 7999999999988888 899999998887764
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.74 E-value=7.3e-17 Score=171.29 Aligned_cols=127 Identities=26% Similarity=0.342 Sum_probs=97.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001430 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 424 (1079)
....|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||.++-|.+.+.
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~--------------------- 79 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR--------------------- 79 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH---------------------
Confidence 466889999999998 65 67899999999999998889999999998863222110
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001430 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~ 504 (1079)
++.+
T Consensus 80 ------------------------------~~~~---------------------------------------------- 83 (251)
T cd06439 80 ------------------------------EYAD---------------------------------------------- 83 (251)
T ss_pred ------------------------------HHhh----------------------------------------------
Confidence 0100
Q ss_pred CCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCce
Q 001430 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKH 584 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~ 584 (1079)
. ++.++..+++. .|++|+|.+++. .++++|+.+|+|.+ +.+++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~~-----g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPERR-----GKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCCC-----ChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 0 14445444433 499999999986 57899999999998 5799999999998877 6
Q ss_pred EEEEecCccccCC
Q 001430 585 VCYVQFPQRFDGI 597 (1079)
Q Consensus 585 v~~VQ~PQ~F~ni 597 (1079)
+++|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8889987766543
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.74 E-value=3.2e-16 Score=179.81 Aligned_cols=133 Identities=23% Similarity=0.195 Sum_probs=93.1
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001430 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 424 (1079)
+...|+|.|+||++| |. ..+..++-|++++|||. ++.|+|.|||.++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999998 76 67889999999999995 589999999998743332111
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001430 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~ 504 (1079)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccC-CCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCc
Q 001430 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT-NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 583 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavlt-ngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~ 583 (1079)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|.. ++|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01344554433332 33579999999998742111 2899999999997 7999999999998876
Q ss_pred eEEEEecC
Q 001430 584 HVCYVQFP 591 (1079)
Q Consensus 584 ~v~~VQ~P 591 (1079)
++++|...
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 34555543
No 35
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=1.2e-14 Score=166.84 Aligned_cols=211 Identities=21% Similarity=0.361 Sum_probs=149.8
Q ss_pred cEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecCcccc
Q 001430 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFD 595 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v~~VQ~PQ~F~ 595 (1079)
++.|-.|.+ |-..||||+-..+|..| +..+|+++||||.+ -..+.+-+.+-.| .|| +.|++||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 367777766 56679999999999887 77899999999998 5888999888877 688 789999975554
Q ss_pred CCCccccccchhhhhhhhhc-----------cccccCCC--ccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCC
Q 001430 596 GIDRNDRYANRNTVFFDINL-----------RGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 662 (1079)
Q Consensus 596 nid~~Dry~n~~~vFfdi~~-----------~glDg~qg--p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 662 (1079)
|.| |+|-++.| -|+..||+ .-|
T Consensus 282 gg~---------TL~AR~qQFatrvYGpl~~~GLawW~~~Es~y------------------------------------ 316 (736)
T COG2943 282 GGD---------TLYARCQQFATRVYGPLFTAGLAWWQLGESHY------------------------------------ 316 (736)
T ss_pred Ccc---------hHHHHHHHHHHHHhchHHhhhhHHHhcccccc------------------------------------
Confidence 433 44444333 33333333 234
Q ss_pred cccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCc
Q 001430 663 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 742 (1079)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~ 742 (1079)
+|.+.+.|..++.|.-|.|.-
T Consensus 317 ----------------------------------------------------------WGHNAIIRt~aF~~hcgLp~L- 337 (736)
T COG2943 317 ----------------------------------------------------------WGHNAIIRTKAFIEHCGLPPL- 337 (736)
T ss_pred ----------------------------------------------------------ccccceeechhhHHhcCCCCC-
Confidence 455555555555444444330
Q ss_pred chhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhh
Q 001430 743 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 822 (1079)
Q Consensus 743 ~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA 822 (1079)
..+-..|. ..++.|+.-+-.|.+.||-+.-. +++...|.+.|.|+.+++++-+||+
T Consensus 338 -----------------pG~~pFgG------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC 393 (736)
T COG2943 338 -----------------PGRGPFGG------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWC 393 (736)
T ss_pred -----------------CCCCCCCc------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhh
Confidence 11112222 35789999999999999955444 6777889999999999999999999
Q ss_pred ccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHH
Q 001430 823 LGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPA 873 (1079)
Q Consensus 823 ~G~lQIll~k~~PL~~g~~~~Lt~~QRL~Yl~~~ly~l~slp~liylllP~ 873 (1079)
+|++|-+. ++. .++|.|..|+.++..++.++++....+++++-.
T Consensus 394 ~GNLqh~r-----l~~--~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~g~ 437 (736)
T COG2943 394 HGNLQHFR-----LFL--VKGLHWVSRAHFLTGVMSYLSAPLWFLFLLLGT 437 (736)
T ss_pred hcchhhce-----eec--cCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999874 332 689999999999998877776644444443333
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.66 E-value=5.7e-15 Score=154.98 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcc
Q 001430 724 SAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAF 803 (1079)
Q Consensus 724 s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af 803 (1079)
...|+++.+.++||++.. ....||.+++++++++|+++.|++.. . .
T Consensus 160 ~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~-~-~ 205 (249)
T cd02525 160 HGAYRREVFEKVGGFDES--------------------------------LVRNEDAELNYRLRKAGYKIWLSPDI-R-V 205 (249)
T ss_pred cceEEHHHHHHhCCCCcc--------------------------------cCccchhHHHHHHHHcCcEEEEcCCe-E-E
Confidence 345667778888987651 13469999999999999999999543 3 3
Q ss_pred cccCCCCHHHHHHHHHHhhccchhHhhh
Q 001430 804 KGSAPINLSDRLNQVLRWALGSVEILFS 831 (1079)
Q Consensus 804 ~G~aPetl~~~lkQR~RWA~G~lQIll~ 831 (1079)
....+.+++.+++|+.||+.|..|.+..
T Consensus 206 ~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 206 YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 6778899999999999999999999874
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.62 E-value=1.2e-15 Score=156.46 Aligned_cols=138 Identities=26% Similarity=0.368 Sum_probs=101.9
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhc----cccccCC-Ccccc
Q 001430 553 FLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINL----RGLDGIQ-GPVYV 627 (1079)
Q Consensus 553 ~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~----~glDg~q-gp~yv 627 (1079)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+.++|.... +..+..+ .....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 6899999997 6899999999998888 8999999999873 34445555555553221 0111111 12233
Q ss_pred ccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchh
Q 001430 628 GTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDE 707 (1079)
Q Consensus 628 GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1079)
|+|.
T Consensus 74 G~~~---------------------------------------------------------------------------- 77 (193)
T PF13632_consen 74 GSGM---------------------------------------------------------------------------- 77 (193)
T ss_pred Ccce----------------------------------------------------------------------------
Confidence 4444
Q ss_pred hHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHH
Q 001430 708 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMH 787 (1079)
Q Consensus 708 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~ 787 (1079)
.+++++++++||++. ..+++||+++++++.
T Consensus 78 ------------------~~r~~~l~~vg~~~~--------------------------------~~~~~ED~~l~~~l~ 107 (193)
T PF13632_consen 78 ------------------LFRREALREVGGFDD--------------------------------PFSIGEDMDLGFRLR 107 (193)
T ss_pred ------------------eeeHHHHHHhCcccc--------------------------------cccccchHHHHHHHH
Confidence 445555567776540 468999999999999
Q ss_pred HCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001430 788 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 825 (1079)
Q Consensus 788 ~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~ 825 (1079)
++||++.|++.. .++..+|.|+.++++||+||..|.
T Consensus 108 ~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 108 RAGYRIVYVPDA--IVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred HCCCEEEEeccc--ceeeeCCCCHHHHHHHHHHHHhhh
Confidence 999999999643 348999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.51 E-value=1.5e-13 Score=142.18 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=80.5
Q ss_pred cEEEEecccCCCCCcCchhhhHHHHHHHhc-------ccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEe
Q 001430 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSA-------VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ 589 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSa-------vltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ 589 (1079)
++.++.++.. + ....|++|+|++++.+. .-..+++|+++|+|.. +.|++|+++..+|.|| +++.||
T Consensus 51 ~v~~i~~~~~-~-~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLP-N-ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCC-c-CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 3666665421 1 12359999999998631 0012589999999997 7999999988899898 799999
Q ss_pred cCccccCCCccc--cc-cchhhhhhhhhccccccCCCccccccCchhhhhhh
Q 001430 590 FPQRFDGIDRND--RY-ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 638 (1079)
Q Consensus 590 ~PQ~F~nid~~D--ry-~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 638 (1079)
.+.++.|.+.+- ++ ..+...++.+.+.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 11 12233334456666665555557889999988887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.42 E-value=1e-12 Score=134.26 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=46.9
Q ss_pred CchhhhHHHHHHHhc-ccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCC
Q 001430 532 HKKAGAMNALVRVSA-VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 598 (1079)
Q Consensus 532 h~KAGalNallrvSa-vltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid 598 (1079)
..|++|+|.+++... .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+
T Consensus 62 ~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 62 RGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 459999999998631 1247999999999998 6899999999988653 24688877666543
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.38 E-value=9.1e-12 Score=127.46 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=48.8
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecCccc
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v~~VQ~PQ~F 594 (1079)
+.++..+.+. .++.|+|.+++. +.++||+.+|+|.+ +.+++|.+++-.| .+| ++++|+.....
T Consensus 60 ~~~~~~~~~~-----g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 123 (202)
T cd04184 60 IKVVFREENG-----GISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADLIYSDEDK 123 (202)
T ss_pred EEEEEcccCC-----CHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCEEEccHHh
Confidence 4555554433 479999999986 57899999999997 7999999999877 777 56677655443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.35 E-value=2.7e-11 Score=124.12 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=51.9
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEecCccccC
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F~n 596 (1079)
+.|+.+++..| +++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 56666665444 89999999986 58999999999997 78999999999874 56 6788887655443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.22 E-value=4.5e-11 Score=123.95 Aligned_cols=154 Identities=25% Similarity=0.333 Sum_probs=109.4
Q ss_pred cCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccch-hhh
Q 001430 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANR-NTV 609 (1079)
Q Consensus 531 hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~Dry~n~-~~v 609 (1079)
-+.|..||-++++. . ...++|+++|+|+. .+|++|++++.-|.|| ++++|..+.++.+.+. +... ...
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~---~~~~l~~~ 83 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPARG---FWSRLEAA 83 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCcC---HHHHHHHH
Confidence 47899999999985 2 68999999999998 5899999999999999 7899988777555432 2111 112
Q ss_pred hhhhhcccc-c-cCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCC
Q 001430 610 FFDINLRGL-D-GIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTV 687 (1079)
Q Consensus 610 Ffdi~~~gl-D-g~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1079)
|+.. .++. . .-..++
T Consensus 84 ~~~~-~~~~~~a~~~~~~-------------------------------------------------------------- 100 (175)
T PF13506_consen 84 FFNF-LPGVLQALGGAPF-------------------------------------------------------------- 100 (175)
T ss_pred HHhH-HHHHHHHhcCCCc--------------------------------------------------------------
Confidence 2210 0000 0 000111
Q ss_pred ccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCcccc
Q 001430 688 PIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGS 767 (1079)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~ 767 (1079)
.+|.+..||+++|+++||+.. |
T Consensus 101 --------------------------------~~G~~m~~rr~~L~~~GG~~~------------------------l-- 122 (175)
T PF13506_consen 101 --------------------------------AWGGSMAFRREALEEIGGFEA------------------------L-- 122 (175)
T ss_pred --------------------------------eecceeeeEHHHHHHcccHHH------------------------H--
Confidence 135566777788888898643 0
Q ss_pred ccCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCC----CCHHHHHHHHHHhhc
Q 001430 768 EIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP----INLSDRLNQVLRWAL 823 (1079)
Q Consensus 768 eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aP----etl~~~lkQR~RWA~ 823 (1079)
.+.++||+.+|-+++.+||++++.+.. +.....| .++.++++++.||++
T Consensus 123 -----~~~ladD~~l~~~~~~~G~~v~~~~~~--v~~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 123 -----ADYLADDYALGRRLRARGYRVVLSPYP--VVQTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred -----hhhhhHHHHHHHHHHHCCCeEEEcchh--eeecccCccccccHHHHHHHHHhhcC
Confidence 157899999999999999999999532 2255666 489999999999985
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.19 E-value=4.4e-10 Score=113.43 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=43.2
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH-HhhcCCCCCceEEEEecCccccC
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM-CFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am-cff~Dp~~g~~v~~VQ~PQ~F~n 596 (1079)
.+++|+|.+++. .+++||+.+|+|-+ ..++.+.+.+ .+..+| ++.+|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 389999999986 58999999999998 5889999998 455666 5666766655443
No 44
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.14 E-value=8.1e-09 Score=122.99 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=46.3
Q ss_pred cccchHHHHHHHHHC--CCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhh
Q 001430 775 SVTEDILTGFKMHAR--GWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILF 830 (1079)
Q Consensus 775 sVTED~~tg~rL~~r--GWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~lQIll 830 (1079)
.+.||-.++..|.++ |||..|+..+.+ +..+|++++.+++||+||..|++--++
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl~ 379 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNLF 379 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhHh
Confidence 678999988877776 899999966543 999999999999999999999985543
No 45
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.12 E-value=2.7e-09 Score=118.00 Aligned_cols=110 Identities=22% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001430 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 432 (1079)
Q Consensus 353 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~ 432 (1079)
|+|||+| |++..+.+||.|+++..||.....|+|.|||.+.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 888999999999999999866678999999988643332110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCCCCCCCC
Q 001430 433 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 512 (1079)
Q Consensus 433 k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g~~d~~~ 512 (1079)
+.. .
T Consensus 51 -------------------------~~~--------~------------------------------------------- 54 (299)
T cd02510 51 -------------------------EYY--------K------------------------------------------- 54 (299)
T ss_pred -------------------------HHH--------h-------------------------------------------
Confidence 000 0
Q ss_pred CCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CC
Q 001430 513 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 579 (1079)
Q Consensus 513 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~-Dp 579 (1079)
...|++.++..++.- .++.|.|.+++. +.|+||+.||+|.+ +.+++|.+.+-.+. +|
T Consensus 55 ~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~~~ 112 (299)
T cd02510 55 KYLPKVKVLRLKKRE-----GLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAENR 112 (299)
T ss_pred hcCCcEEEEEcCCCC-----CHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHhCC
Confidence 011346666665433 488999999997 68999999999998 59999999998775 44
No 46
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.12 E-value=1.4e-09 Score=111.79 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHh-hcCCCCCceEEEEecCcccc
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF-MMDPNLGKHVCYVQFPQRFD 595 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcf-f~Dp~~g~~v~~VQ~PQ~F~ 595 (1079)
+.++..+++. .+++|+|.+++. .+|+||+++|+|-+ ..|+.|.+.+.. +.+| +.+++.....+.
T Consensus 56 ~~~~~~~~~~-----G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 56 IILIRNGKNL-----GVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred EEEEeCCCCc-----cHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 4455555433 489999999886 68999999999997 689999999987 5666 667787776544
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.07 E-value=4.8e-09 Score=108.96 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001430 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 534 KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp 579 (1079)
|++|+|.+++. .++++|+++|.|.+ +.+++|.+.+-.+.++
T Consensus 60 ~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 60 RARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcC
Confidence 89999999886 46999999999998 6899999986666554
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.05 E-value=4.5e-09 Score=103.04 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=41.0
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecC
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFP 591 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v~~VQ~P 591 (1079)
.+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+ .+| ++++|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 489999999996 48999999999998 6899999999755 445 66766655
No 49
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.04 E-value=6.9e-09 Score=104.57 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=36.6
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp 579 (1079)
.|++|+|.+++. ++|+||+.+|+|-. +.+++|++.+-++ ++
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 589999999986 68999999999997 7999999999877 44
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.01 E-value=1.7e-10 Score=95.59 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=30.4
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8889999999 999999999999999999999999999996
No 51
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.98 E-value=6.9e-09 Score=100.51 Aligned_cols=63 Identities=35% Similarity=0.468 Sum_probs=47.8
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH-HhhcCCCCCceEEEEecCccc
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM-CFMMDPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am-cff~Dp~~g~~v~~VQ~PQ~F 594 (1079)
++|+..++..| |+.|+|.+++. .++++|+.+|+|.+ ..+++|.+.+ .++.++ +++.|...+..
T Consensus 55 ~~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 55566555444 99999999997 48999999999997 5899999994 455666 56666655443
No 52
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.94 E-value=2.8e-08 Score=106.57 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=46.2
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecC
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~P 591 (1079)
+.++.+++..| |++|+|++++. +.|+||+.+|+|.. .+|++|.+++-.+.++ +..+|...
T Consensus 70 v~~~~~~~n~G-----~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGKLG-----LGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 55555554333 89999999986 58999999999997 7999999999888665 34555543
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.93 E-value=9.8e-09 Score=107.98 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+++
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHH
Confidence 66677665444 99999999986321 15699999999998 6899999985
No 54
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.92 E-value=2.4e-08 Score=104.78 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=35.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 001430 353 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 398 (1079)
Q Consensus 353 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt 398 (1079)
|+||||| + ...+..|+-|+++.+|| +.+.++|.|||...-|
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 6899998 4 47999999999999999 4689999999987643
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.91 E-value=4.9e-08 Score=101.63 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=46.9
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecC
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 591 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~P 591 (1079)
+.++..++..| |++|+|.+++. +.++||+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 45555555444 89999999987 57899999999997 7999999999987766 34555554
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.90 E-value=2.2e-09 Score=104.24 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=75.7
Q ss_pred cEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001430 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 596 (1079)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.++. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 488999986 33 699999999997 68899999999998 57789999999998741 14444444444333
Q ss_pred CCcccccc--chhhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001430 597 IDRNDRYA--NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 597 id~~Dry~--n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
........ .....++............+.++|+++++||++|-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 22222211 12234444455556677789999999999999983
No 57
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.88 E-value=2.8e-08 Score=102.40 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccc
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F 594 (1079)
+.|+.-++.. ..+.++|.++...- ...++|++.+|+|.+ +.+++|++++-.+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n~-----g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPENL-----GGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECcccc-----chhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 4555555422 37888898887532 357899999999997 6899999999888777 55555 34343
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.63 E-value=4.4e-07 Score=94.66 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=45.7
Q ss_pred EEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCcc
Q 001430 519 VYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR 593 (1079)
Q Consensus 519 vYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~ 593 (1079)
.++..++..| |++|+|.+++. +.++||+.+|+|.. ..+++|.+.+..+.++ ....|.....
T Consensus 60 ~~i~~~~n~G-----~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 60 RVLTLPKNRG-----KGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred EEEEcccCCC-----cHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 4555444333 89999999997 57899999999997 7999999999886654 2344555433
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.58 E-value=1e-06 Score=99.98 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=82.3
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001430 347 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 426 (1079)
Q Consensus 347 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 426 (1079)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.|+|.|||.+.-|.+-+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~------------------------ 53 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIA------------------------ 53 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHH------------------------
Confidence 3578999999998 44 6889999999999997 5789999999876322211
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCCCCCCCCccceeeecccCC
Q 001430 427 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 506 (1079)
Q Consensus 427 e~yF~~k~d~~~~~~~~~fv~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~g~~~rdhp~~iqv~l~~~g 506 (1079)
++|.+
T Consensus 54 ---------------------------~~~~~------------------------------------------------ 58 (328)
T PRK10073 54 ---------------------------KHYAE------------------------------------------------ 58 (328)
T ss_pred ---------------------------HHHHh------------------------------------------------
Confidence 11110
Q ss_pred CCCCCCCCCCcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001430 507 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 507 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp 579 (1079)
+.|++.++..+ . ...++|.|.++.. ..|+||+.+|+|-+ ..|++|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~-n-----~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA-N-----AGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC-C-----CChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01245555432 2 2489999999986 69999999999998 5899999999877654
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.56 E-value=4.7e-07 Score=91.31 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=50.7
Q ss_pred EEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001430 518 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 518 lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 596 (1079)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+-.+..+ +..+|+.+..+.+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45666666555 99999999986 57899999999997 6999999999886654 4567777765554
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.54 E-value=1.9e-06 Score=94.36 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=49.5
Q ss_pred cEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccc
Q 001430 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 594 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F 594 (1079)
.+.|+.-++.-| .|||+|.+++.. .-.+++||+.+|.|-+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 466776655444 799999999863 1237899999999998 6899999999887542 12677776 4433
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.51 E-value=3.1e-06 Score=94.29 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=43.3
Q ss_pred CcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001430 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~D 578 (1079)
|++.|+..++..| ++.|+|.++.. ++|+||+.+|+|-+ ..|+.|.+.+-++..
T Consensus 60 ~ri~~i~~~~n~G-----~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 60 PRITYIHNDINSG-----ACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCEEEEECCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 3578887665444 89999999986 68999999999998 589999998887643
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.39 E-value=9.4e-06 Score=88.66 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=36.0
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhH
Q 001430 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGAAMLTF 399 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~-DYP~~kl~~yvsDDG~~~ltf 399 (1079)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||.+.-|.
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~ 48 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTR 48 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHH
Confidence 56899999998 64 5789999999864 233347889999999887433
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.38 E-value=7.6e-06 Score=77.35 Aligned_cols=51 Identities=27% Similarity=0.337 Sum_probs=41.1
Q ss_pred CchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCceEEEEecC
Q 001430 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFP 591 (1079)
Q Consensus 532 h~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amc-ff~Dp~~g~~v~~VQ~P 591 (1079)
..|++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +..+|+.+
T Consensus 63 ~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 63 QGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 3499999999987 37999999999997 68889988744 45555 67778776
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.34 E-value=5e-06 Score=84.45 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=63.4
Q ss_pred cEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccC
Q 001430 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 596 (1079)
Q Consensus 517 ~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 596 (1079)
++.|+..++.. .|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++. .++.+..-.. .+
T Consensus 56 ~i~~i~~~~n~-----G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSRNF-----GQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecCCC-----CcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc
Confidence 35666555433 499999999986 57899999999997 689999999987 4432 2444433222 22
Q ss_pred CCccccccchhhhhhhhhccccccCCCccccccCchhhhhhhc
Q 001430 597 IDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
Q Consensus 597 id~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 639 (1079)
.....++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 1111111111 1111 11222334445666777899999985
No 66
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.32 E-value=7.8e-06 Score=101.41 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccch
Q 001430 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSV 826 (1079)
Q Consensus 775 sVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~G~l 826 (1079)
+..||-.+..++..+||+.-|+.... ....+|+++.+++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~--a~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASD--AETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecccc--ccccCcHhHHHHHHHhhhhcccch
Confidence 48999999999999999999996543 389999999999999999999943
No 67
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.30 E-value=1.7e-05 Score=87.99 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=45.2
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCc
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDR 599 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~ 599 (1079)
.+|.|.|.++.. +++++|+.+|+|.+ +.|++|.+++-+.+.=. ....+++-.|..|.+.+.
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~ 135 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEG 135 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchh
Confidence 699999999987 69999999999997 79999999998321100 012456666777765543
No 68
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.26 E-value=2.6e-05 Score=87.38 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=51.7
Q ss_pred CcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCC-EEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEEecCcc
Q 001430 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP-FLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQR 593 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSavltngp-~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v~~VQ~PQ~ 593 (1079)
|.+.|+.-.+.-|| ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+ .+| .+++|+.-.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 34677776666675 89999888763 35544 9999999975 7999999999766 455 6788887766
Q ss_pred ccC
Q 001430 594 FDG 596 (1079)
Q Consensus 594 F~n 596 (1079)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 543
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.15 E-value=4.6e-05 Score=86.93 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=35.4
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~D 578 (1079)
.|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 499999999986 57999999999997 689998888877653
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.99 E-value=4.2e-05 Score=86.42 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=42.1
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCceEEEEec
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQF 590 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~ 590 (1079)
.|++|+|.+++. ++|++|+.+|+|....+|++|.+.+..+. || ++.+|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 499999999986 68999999999985368999999998775 77 5777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.33 E-value=0.0015 Score=74.40 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=35.6
Q ss_pred chhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc
Q 001430 533 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 577 (1079)
Q Consensus 533 ~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~ 577 (1079)
.|++|+|++++. +.|++++.+|||.. .+|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 489999999987 58999999999997 79999999988764
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.29 E-value=0.0058 Score=70.13 Aligned_cols=158 Identities=25% Similarity=0.357 Sum_probs=110.1
Q ss_pred cCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEE-ecCccccCCCccccccchhhh
Q 001430 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV-QFPQRFDGIDRNDRYANRNTV 609 (1079)
Q Consensus 531 hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~V-Q~PQ~F~nid~~Dry~n~~~v 609 (1079)
-+.|-.||=-+.|. ...|+|++.|.|-. -.|+.+....-=||.|+ ++|+| |+|-.++---
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 45677777777786 68899999999998 59999999888888775 89988 7776554211
Q ss_pred hhhhhccccccCCCccccccCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCcccCCCcCccCCCcccCCCCCCCCCcc
Q 001430 610 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPI 689 (1079)
Q Consensus 610 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1079)
|| .--.-+|-||. +-|--|-|- |-.
T Consensus 216 -f~-------atle~~~fgTs--h~r~yl~~n-------------~~~-------------------------------- 240 (431)
T KOG2547|consen 216 -FD-------ATLEQVYFGTS--HPRIYLSGN-------------VLG-------------------------------- 240 (431)
T ss_pred -ch-------hhhhheeeccC--CceEEEccc-------------ccc--------------------------------
Confidence 11 11112555553 233222110 000
Q ss_pred ccchhhhhcccCCCCchhhHHhhhHHHHHHhc-cchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccc
Q 001430 690 FSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRF-GQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSE 768 (1079)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-G~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~e 768 (1079)
-+++ |-|...|+++++|.||+...
T Consensus 241 ----------------------------~~c~tgms~~mrK~~ld~~ggi~~f--------------------------- 265 (431)
T KOG2547|consen 241 ----------------------------FNCSTGMSSMMRKEALDECGGISAF--------------------------- 265 (431)
T ss_pred ----------------------------ccccccHHHHHHHHHHHHhccHHHH---------------------------
Confidence 0111 66788999999999996541
Q ss_pred cCcccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001430 769 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 823 (1079)
Q Consensus 769 iGW~ygsVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPetl~~~lkQR~RWA~ 823 (1079)
.+.+.||+..+-.+..+||++.+..-.. -...+-.+...+..|-.||..
T Consensus 266 ----~~yLaedyFaaksllSRG~ksaist~pa--lQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 266 ----GGYLAEDYFAAKSLLSRGWKSAISTHPA--LQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhhhhcccch--hhhhhhhHHHHHHHHHHHhhh
Confidence 1489999999999999999999986432 256666788888888899976
No 73
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.92 E-value=0.0076 Score=64.55 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001430 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 534 KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~Dp 579 (1079)
.+.+.|.++.. ..+++|+.+|+|.+ ..++.+.+...++.++
T Consensus 59 ~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 59 FGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred hHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 78999999986 57899999999998 6999999999887654
No 74
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.0099 Score=56.99 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 001430 348 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 397 (1079)
Q Consensus 348 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l 397 (1079)
.|.|.|+|||+| |+ .....+|.|++...|+. ..+.|.|||.+.-
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~ 45 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDG 45 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCC
Confidence 477999999998 55 89999999999999996 5599999999873
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.70 E-value=0.00077 Score=75.50 Aligned_cols=48 Identities=31% Similarity=0.946 Sum_probs=43.7
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
.|..|=+.+..+ ..-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999998776 3459999 99999999999999999999999999999
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.82 E-value=0.0096 Score=67.46 Aligned_cols=61 Identities=25% Similarity=0.522 Sum_probs=53.2
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccccCCCcc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAI 78 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv 78 (1079)
..+.|.+|-.+..++.+=.++|. +||-..|+.|.+---+.|...||+|++..++.+=.|.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 45799999999999988888988 99999999999887788999999999999887544554
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.94 E-value=0.016 Score=49.96 Aligned_cols=46 Identities=35% Similarity=0.884 Sum_probs=37.0
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCC--Ccccc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRY 69 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPq--Ckt~Y 69 (1079)
.+..|.+||+.+ .+|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~---~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKF---KDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcc---cCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 356899999998 357889999999999999999764 45555 66665
No 78
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=94.91 E-value=0.32 Score=56.24 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=34.7
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001430 352 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 352 DvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
-|+|.||| -|.-+.+|+-|+++..+-.+...+||++||...
T Consensus 3 PVlv~ayN----Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN----RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC----CHHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888996 469999999999998755567889999999875
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=91.03 E-value=2 Score=54.62 Aligned_cols=71 Identities=28% Similarity=0.369 Sum_probs=46.7
Q ss_pred cccchHHHHHHHHHCCCEEEEeCCCCCcccccCCC-CHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchh
Q 001430 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPI-NLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFA 851 (1079)
Q Consensus 775 sVTED~~tg~rL~~rGWrsvY~~p~~~af~G~aPe-tl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL~ 851 (1079)
.++||+..|+....||-++.++ +-..+ |..-+ .+..-..=-..-+.|+=+..++|.--. ++.+|.+..-|+
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~-ey~qc--GKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yr---Lg~~ld~~R~LS 480 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHC-EYIQC--GKGRDVGFNSILNFETKIASGMGEQMLSREYYR---LGTRLDFFRFLS 480 (817)
T ss_pred cccHHHHHHHHHHhcCCceeeh-hhhhc--ccccccCchhhhhhHhHhcCCccchhhhHHHHH---hhccCCHHHHHH
Confidence 7999999999999999999999 44443 43221 223333334577889888877764211 255677765554
No 80
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.03 E-value=0.38 Score=37.53 Aligned_cols=44 Identities=32% Similarity=0.779 Sum_probs=33.2
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.|.||.+.. .+.+ ....|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPV-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCce-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998887 2222 2335899999999987666678899999975
No 81
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.02 E-value=0.34 Score=48.95 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=39.0
Q ss_pred ccccccCCCcccCCCCCccccCCCC-CCCcchhhHHHHHh--hCCCCCCCCcccccccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERK--DGNQSCPQCKTRYKKHK 73 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cyeyerk--eG~~~CPqCkt~Ykr~k 73 (1079)
--|.||.|.= .-|-|.-=||| ||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~etS----~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETS----AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCccccc----chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 3699998741 23446655564 99999999976666 45589999999998753
No 82
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=87.47 E-value=2.9 Score=44.92 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=38.4
Q ss_pred CcEEEEecccCCCCCcCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001430 516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 578 (1079)
Q Consensus 516 P~lvYvsRekrPg~~hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff~D 578 (1079)
+++.-..|.+.-|. .-|.-+.+.+ ..|+|++++|||-- -+|+++-+.+....+
T Consensus 63 d~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 63 DNILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred CcEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 35777888875443 2234445554 68999999999985 899999998776655
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=84.87 E-value=0.98 Score=38.84 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.0
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
+|.||++-+ .+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 699999874 22 433 378999999999877766 67899999877
No 84
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=78.38 E-value=2.7 Score=45.26 Aligned_cols=64 Identities=31% Similarity=0.652 Sum_probs=42.2
Q ss_pred CCCCCCCCCcc-ccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHH---------------hhCCCCCCC
Q 001430 1 MESEGETGVKS-IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---------------KDGNQSCPQ 64 (1079)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer---------------keG~~~CPq 64 (1079)
||-+.++..+. +...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +.+...||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv 73 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC
Confidence 56665555544 44445569999999752 3344 2689999999996321 113468999
Q ss_pred Ccccccc
Q 001430 65 CKTRYKK 71 (1079)
Q Consensus 65 Ckt~Ykr 71 (1079)
|++....
T Consensus 74 CR~~Is~ 80 (193)
T PLN03208 74 CKSDVSE 80 (193)
T ss_pred CCCcCCh
Confidence 9998843
No 85
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.30 E-value=1.1 Score=56.24 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=21.3
Q ss_pred CCCCCCC----cchhhHHHHHhhCCCCCCCCcccccc
Q 001430 39 CDVCAFP----VCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 39 C~eC~fp----vCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
|.+||-+ .|.-|- .+..+|..-||+|+++-..
T Consensus 18 C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 18 CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred ccccCCCCCCCcCCCCC-CCCCcccccccccCCcccc
Confidence 5555444 355554 4567888999999988654
No 86
>PHA02929 N1R/p28-like protein; Provisional
Probab=76.22 E-value=3.1 Score=46.25 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=39.8
Q ss_pred cCCccccccCCCcccCC-CCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001430 15 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
.....|.||.+.+..++ ....+..=..|+-.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 44679999999875433 112233444789999999995 45567899999999875
No 87
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=76.05 E-value=2.7 Score=43.93 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=34.6
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCC---CcchhhHHHH-HhhCCCCCCCCccccccc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYE-RKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeye-rkeG~~~CPqCkt~Ykr~ 72 (1079)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-= ...|+..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 345999997762 2344588 5532 2346787654 346789999999999654
No 88
>PHA02862 5L protein; Provisional
Probab=75.42 E-value=1.8 Score=44.48 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=31.9
Q ss_pred CccccccCCCcccCCCCCccccCCCC---CCCcchhhHHHH-HhhCCCCCCCCcccccc
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYEYE-RKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC---~fpvCr~Cyeye-rkeG~~~CPqCkt~Ykr 71 (1079)
+.+|.||-++- +|..-+| .| -==|=+.|.+-= ...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899998862 3445777 34 112334554322 44788999999999954
No 89
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=74.97 E-value=14 Score=42.23 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=32.0
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCC---CcEEEEecCCCchhhHHH
Q 001430 350 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVD---KVSCYVSDDGAAMLTFEA 401 (1079)
Q Consensus 350 ~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~---kl~~yvsDDG~~~ltf~a 401 (1079)
..-|+||.||=.+-=+.+.-.|+-. |.-.|-.| ...+.|+|||...-|.+.
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~ 121 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEV 121 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHH
Confidence 6789999999222223444444433 34445442 567999999999866553
No 90
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=73.11 E-value=2 Score=34.88 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.3
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCk 66 (1079)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||.|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 69999999854 67777775 9999999998654444 57999995
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.15 E-value=1.9 Score=37.57 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=34.4
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
.-|.|-.||..-.. ..+.+ ||=-||+-|+.-||-.| ||=|+||+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34567777765221 12344 59999999999999887 99999999654
No 92
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=66.72 E-value=3.3 Score=34.50 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.1
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
-+|.-||.++.++.. .-+-|.+||+.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888733 348899999876
No 93
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=66.36 E-value=4.2 Score=31.78 Aligned_cols=26 Identities=27% Similarity=0.755 Sum_probs=18.9
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
+|.-||.++.+.. ++ -|-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999998664 33 37999999865
No 94
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=66.28 E-value=5.3 Score=29.77 Aligned_cols=39 Identities=38% Similarity=0.944 Sum_probs=27.6
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCC
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqC 65 (1079)
|.||.+.. ..+.+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77887771 12211 25888899999976666677889987
No 95
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=65.52 E-value=22 Score=38.76 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=38.7
Q ss_pred CchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCceEEEE
Q 001430 532 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYV 588 (1079)
Q Consensus 532 h~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcff-~Dp~~g~~v~~V 588 (1079)
..-|-+.|++++. ++++|++.+.=|-.+.+++++.+++-.| .|| ++|+|
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 3468899999986 7999999999999999999999999988 999 55544
No 96
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=65.35 E-value=33 Score=37.07 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhc-CCCCcch
Q 001430 981 PTTLLVINLVGVVAGVSYAINSGYQSWGP--LFGKLFFAFWVIVHLYPFLKGLMG-RQNRTPT 1040 (1079)
Q Consensus 981 ~~~LlilnliaIv~Gi~r~i~~g~~~w~~--l~g~l~~~~Wvl~nl~Pfl~gL~g-R~~~~P~ 1040 (1079)
=..|+++.+++++-|+.-+++......|- +....+..++++|.+|-|+--+.+ |..|.++
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 44578888999999998888755443342 344557778888888888766665 4467777
No 97
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.15 E-value=5.7 Score=45.84 Aligned_cols=52 Identities=29% Similarity=0.860 Sum_probs=43.1
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
...|.||++.. +.+--.|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 46899999985 4445579999 99999999998 34468999999999999764
No 98
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.61 E-value=4.7 Score=44.39 Aligned_cols=44 Identities=34% Similarity=0.879 Sum_probs=37.4
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCcchhhHHHH---HhhCCCCCCCCcccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRY 69 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye---rkeG~~~CPqCkt~Y 69 (1079)
--|.||=|.+ =|+.|-| ||---|.||. |- -...++.||=||..-
T Consensus 48 FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 48 FDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred eeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCcccccc
Confidence 4799998876 5678888 9999999998 76 568899999999865
No 99
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=5.5 Score=45.18 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=43.4
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+-|.+|--++-++.+ ++.-=|+|+.+.|-.|..---.-|...||.|.+.-++.
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888877765 55555699999999999777778999999999988765
No 100
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=62.42 E-value=1.3 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.1
Q ss_pred hhhHHHHHhhCCCCCCCCccccccc
Q 001430 48 RPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 48 r~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 4577788999999999999999544
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=5 Score=45.80 Aligned_cols=46 Identities=33% Similarity=0.787 Sum_probs=37.9
Q ss_pred CCCCCccccCCCCCCCc--------ch--hhHHHHHhhCCCCCCCCccccccccCC
Q 001430 30 TVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 30 ~~~G~~fvaC~eC~fpv--------Cr--~CyeyerkeG~~~CPqCkt~Ykr~kgs 75 (1079)
..+|+..--|.-|+||| |+ .|||-.|.|-.+.||.|-.|-.|..-+
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQI 139 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHHh
Confidence 34566677799999998 54 699999999999999999999887433
No 102
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=7.2 Score=44.62 Aligned_cols=66 Identities=32% Similarity=0.775 Sum_probs=47.9
Q ss_pred ccccCCccccc--cCCCcccCCCCCccccCCC-CCCCcchhhHH-----------------------HHH----------
Q 001430 12 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YER---------- 55 (1079)
Q Consensus 12 ~~~~~~~~Cqi--Cgd~vg~~~~G~~fvaC~e-C~fpvCr~Cye-----------------------yer---------- 55 (1079)
+.++.|-.|.- ||..+-...| +--|.|.. |+|-.||.|.| +||
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45667888986 9987655543 33588877 99999999998 332
Q ss_pred -----hhCCCCCCCCccccccccCCCcc
Q 001430 56 -----KDGNQSCPQCKTRYKKHKGSPAI 78 (1079)
Q Consensus 56 -----keG~~~CPqCkt~Ykr~kgsprv 78 (1079)
|-.++-||.|.++-.|.-|+--+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGCmHm 416 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGCMHM 416 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCceEEe
Confidence 33567799999998887776433
No 103
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=59.54 E-value=7 Score=31.01 Aligned_cols=39 Identities=36% Similarity=0.922 Sum_probs=28.0
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCC
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqC 65 (1079)
|.||-|... ++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~-----~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-----DPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-----SEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc-----CcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 788877642 244443 78999999999777666 7999988
No 104
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=58.25 E-value=6.8 Score=31.00 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.5
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHh-hCCCCCCCC
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 65 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-eG~~~CPqC 65 (1079)
|.||.+...... -=.+|+=..|+.|.+--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888753322 2347899999999987766 788899988
No 105
>PRK00420 hypothetical protein; Validated
Probab=57.64 E-value=4.3 Score=40.26 Aligned_cols=29 Identities=38% Similarity=0.757 Sum_probs=23.1
Q ss_pred ccCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888873 338999999999998854
No 106
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.33 E-value=35 Score=40.49 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=37.0
Q ss_pred CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 001430 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (1079)
Q Consensus 344 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG 393 (1079)
-|.+||++.|+|.-.| |--...++||-|++.-.=|.=--.|.+.||=
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 4689999999999998 9999999999999876544323346667774
No 107
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=55.08 E-value=9.6 Score=45.72 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.6
Q ss_pred CccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 34 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 34 ~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+.-++|++|+.-+ ..+...||+|+++-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 4478899999864 23456899999988665
No 108
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=53.49 E-value=1.7 Score=43.05 Aligned_cols=47 Identities=32% Similarity=0.746 Sum_probs=33.8
Q ss_pred CCccccccCCCcccCC-CCCccccCCCCCCCcchhhHHHHHhhCCCCCCCC
Q 001430 16 GGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 65 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqC 65 (1079)
+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 6679999999987763 35 88999999999999988444444455444
No 109
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.10 E-value=9.9 Score=31.70 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.4
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCC-cchhhHHHHHhhCCCCCCCCcccccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
..|.||.++.-. -.+. .|+=- +|..|++--++ .+..||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 1344 45778 99999976666 77999999998753
No 110
>PHA02926 zinc finger-like protein; Provisional
Probab=52.27 E-value=16 Score=40.29 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=43.0
Q ss_pred ccCCccccccCCCcccC--CCCCccccCCCCCCCcchhhHHHHHhh-----CCCCCCCCccccccccCC
Q 001430 14 NVGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerke-----G~~~CPqCkt~Ykr~kgs 75 (1079)
......|.||=+.+-.. ++...|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 34457999999987543 222223333468889999999776653 346799999999876544
No 111
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=51.47 E-value=8.4 Score=33.08 Aligned_cols=28 Identities=25% Similarity=0.758 Sum_probs=17.8
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHH
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYE 52 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye 52 (1079)
.|.|||+++|+... .-+. =+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~~---DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIK---DGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eecc---Ccc-chHHHHH
Confidence 59999999998642 1111 123 6777773
No 112
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=49.35 E-value=13 Score=30.72 Aligned_cols=37 Identities=27% Similarity=0.871 Sum_probs=28.3
Q ss_pred CccccccCCCcccCCCCCccccCCCC-CCCcchhhHHHHHhhC
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 58 (1079)
...|..|+..+ .|.-| .|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999854 36656 79999 9999999997555444
No 114
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.06 E-value=11 Score=33.43 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=24.7
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchh
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 49 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~ 49 (1079)
.+|+|..||.....+.++..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 6889999999987755566544 87888876554
No 115
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.97 E-value=11 Score=45.04 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=20.7
Q ss_pred ccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 35 ~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999866 1 23346799999986443
No 116
>PRK12495 hypothetical protein; Provisional
Probab=47.23 E-value=9.9 Score=41.72 Aligned_cols=29 Identities=34% Similarity=0.867 Sum_probs=21.9
Q ss_pred cccCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001430 36 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 36 fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 345667777764 45999999999999864
No 117
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.86 E-value=14 Score=48.33 Aligned_cols=45 Identities=22% Similarity=0.677 Sum_probs=32.5
Q ss_pred cCCccccccCCCcccCCCCCccccCCCCCC-----CcchhhHHHHHhhC-CCCCCCCccccc
Q 001430 15 VGGQVCQICGDNVGKTVDGNPFVACDVCAF-----PVCRPCYEYERKDG-NQSCPQCKTRYK 70 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~f-----pvCr~CyeyerkeG-~~~CPqCkt~Yk 70 (1079)
.....|.-||-.. ....|.+||= -.|..| ++.+ .-.||.|++.=+
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4456899999883 4568999984 368888 4433 367999997654
No 118
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=46.49 E-value=6.2 Score=45.10 Aligned_cols=36 Identities=28% Similarity=0.816 Sum_probs=26.9
Q ss_pred cccccCCCcccCCCCCccccCCCC-CCCcchhhHHHHHhhC
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 58 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 58 (1079)
-|.+|--++ ..-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 588887664 23469999999 9999999995444344
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.16 E-value=9.4 Score=44.13 Aligned_cols=31 Identities=29% Similarity=0.928 Sum_probs=26.1
Q ss_pred CCCcchhhHHHHHhhCC--CCCCCCcccccccc
Q 001430 43 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKHK 73 (1079)
Q Consensus 43 ~fpvCr~CyeyerkeG~--~~CPqCkt~Ykr~k 73 (1079)
+|.|||.|+---|-+-+ +-||-|.++||..|
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~k 33 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEK 33 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhh
Confidence 58899999977777666 99999999997653
No 120
>COG4818 Predicted membrane protein [Function unknown]
Probab=42.61 E-value=2.2e+02 Score=27.94 Aligned_cols=26 Identities=31% Similarity=0.453 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCe
Q 001430 928 IGGVSSHLFAVFQGLLKVLAGIDTNF 953 (1079)
Q Consensus 928 i~~vsa~LfAv~~aLlk~L~g~~~~F 953 (1079)
|.+..+++++.+.+++-.+.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 44556788888888887776666666
No 121
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=42.55 E-value=8.7 Score=40.84 Aligned_cols=35 Identities=29% Similarity=0.850 Sum_probs=25.7
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCc-chh--------------hHHHHHhhCC
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAFPV-CRP--------------CYEYERKDGN 59 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpv-Cr~--------------CyeyerkeG~ 59 (1079)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999875 2344578899999999 654 67 7766654
No 122
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.79 E-value=21 Score=42.68 Aligned_cols=45 Identities=24% Similarity=0.680 Sum_probs=33.3
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
-.|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 27 l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 27 LRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred cCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 58999998651 2333 368999999999754433 458999999874
No 123
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=41.76 E-value=15 Score=30.44 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=15.4
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
.|+-||..+..+++.. -+-|..||.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5777777766655443 34555555443
No 124
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.57 E-value=22 Score=44.38 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.7
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001430 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 396 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 396 (1079)
...||++-|+|+-+| |...+..+||-|+...-=|.=-..+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887766556678999998754
No 125
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=40.79 E-value=2.1e+02 Score=39.29 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=41.4
Q ss_pred cccchHHHHHHHHHCCCEEEEeCCCCCccc----ccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccch
Q 001430 775 SVTEDILTGFKMHARGWRSIYCMPKRPAFK----GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERF 850 (1079)
Q Consensus 775 sVTED~~tg~rL~~rGWrsvY~~p~~~af~----G~aPetl~~~lkQR~RWA~G~lQIll~k~~PL~~g~~~~Lt~~QRL 850 (1079)
.+.||+..|+....||-++.+| +-..+-. |....+. =-..-+.|+=|..++|. .|-++.++.+..-|
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~-EYiQvGKGRDvGlnqI~~-----FeaKia~G~GEQ~LSRd---~YrLG~~ldffRmL 1243 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHH-EYIQVGKGRDVGLNQISN-----FEAKIANGNGEQTLSRD---YYRLGTQLDFFRML 1243 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccc-eeeecccccccCcchhhh-----hhhhhcCCCcchhhhHH---HHHhcccccHHHHH
Confidence 6899999999999999888888 3222212 2222221 12356888887777764 22224456665444
Q ss_pred h
Q 001430 851 A 851 (1079)
Q Consensus 851 ~ 851 (1079)
+
T Consensus 1244 S 1244 (1679)
T KOG0916|consen 1244 S 1244 (1679)
T ss_pred H
Confidence 4
No 126
>PRK07220 DNA topoisomerase I; Validated
Probab=40.37 E-value=12 Score=47.95 Aligned_cols=48 Identities=19% Similarity=0.599 Sum_probs=32.3
Q ss_pred ccccccCCCccc--CCCCCccccCCCCCCCcchhhHHHHHh----hCCCCCCCCcc
Q 001430 18 QVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 67 (1079)
Q Consensus 18 ~~CqiCgd~vg~--~~~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CPqCkt 67 (1079)
..|..||.++.. ...|..|..|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 489999977543 23466799996 67888755533321 13578999985
No 127
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=40.01 E-value=63 Score=38.24 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.1
Q ss_pred cCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001430 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 531 hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+| .++.|-+
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYv 181 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYV 181 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHH
Confidence 3558888875443322 35889999999999975 4677654
No 128
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=39.64 E-value=16 Score=37.01 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=36.9
Q ss_pred ccCCccccccCCCccc--CCCCCccccCCCCCCCcchhhHHH---HHhhCCCCCCCCcc
Q 001430 14 NVGGQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 67 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~--~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CPqCkt 67 (1079)
....+.|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3568899999999655 4568 999994 6999996 221 12256689999997
No 129
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=37.96 E-value=12 Score=44.50 Aligned_cols=55 Identities=22% Similarity=0.567 Sum_probs=37.8
Q ss_pred ccccccCCCcccCCCCCccccCCCCC-CCcchhhHHHHHhhCCCCCCCCccccccccC--CCccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHKG--SPAIL 79 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kg--sprv~ 79 (1079)
..|-.|..+| +|-.+|-|.||. |-+|-+|+----.-|.+ ||.-+|+-.+. .|.+.
T Consensus 15 y~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~ 72 (438)
T KOG0457|consen 15 YNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILD 72 (438)
T ss_pred CCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCC
Confidence 4899999886 477899999998 99999999433333322 45566765543 34443
No 130
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.94 E-value=9.5 Score=29.67 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=11.7
Q ss_pred HHHhhCCCCCCCCccccc
Q 001430 53 YERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 53 yerkeG~~~CPqCkt~Yk 70 (1079)
|+-++....||.|+.+-.
T Consensus 11 y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred ECCCcCCCcCcCCCCcHH
Confidence 333336678999987543
No 131
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.85 E-value=8.9 Score=37.92 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=17.6
Q ss_pred ccCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.-|+.|+ ++++..+-.-.||+|+.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCC
Confidence 4576666 556666666679999975
No 132
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=37.25 E-value=24 Score=29.29 Aligned_cols=30 Identities=33% Similarity=0.810 Sum_probs=24.5
Q ss_pred cccccCCCcccCCCCCccccCCCCC-CCcchhhHHH
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEY 53 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~-fpvCr~Cyey 53 (1079)
.|.+|+..+ .| ....|.+|. |-+|.+||..
T Consensus 2 ~C~~C~~~i----~g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPI----VG-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCC----cC-CEEECCCCCCCcCHHHHHCc
Confidence 588999854 25 688999997 9999999953
No 133
>PF15050 SCIMP: SCIMP protein
Probab=36.43 E-value=31 Score=34.76 Aligned_cols=41 Identities=22% Similarity=0.563 Sum_probs=26.8
Q ss_pred ccccccchhhhhhhHHHHHHH-----HHHHHHHHcCCCCCeeecCCC
Q 001430 918 EWWRNEQFWVIGGVSSHLFAV-----FQGLLKVLAGIDTNFTVTSKA 959 (1079)
Q Consensus 918 ~wWrneqfW~i~~vsa~LfAv-----~~aLlk~L~g~~~~F~VTpKg 959 (1079)
+|||+ .||+|-++...+..+ +-.+.+.+.+...+|+++.--
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~ 47 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPL 47 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccch
Confidence 59996 799988775444332 333455566677889888643
No 134
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=36.21 E-value=26 Score=29.57 Aligned_cols=30 Identities=27% Similarity=0.938 Sum_probs=25.1
Q ss_pred cccccCCCcccCCCCCccccCCCC-CCCcchhhHH
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cye 52 (1079)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987652 4588999999 9999999995
No 135
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.08 E-value=36 Score=30.06 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=35.0
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
.-|+.|+.++--+. .+-++-=.||-| |.+|-|-.. +..||-|+--+-+
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 36999999975443 355665578987 999997654 4799999976643
No 136
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=26 Score=44.35 Aligned_cols=62 Identities=27% Similarity=0.770 Sum_probs=42.5
Q ss_pred ccCCccccccCCCcccCCCCC---ccccCCCCC--------------------CCcchhhHH-HH----Hh--hCCCCCC
Q 001430 14 NVGGQVCQICGDNVGKTVDGN---PFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCP 63 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~---~fvaC~eC~--------------------fpvCr~Cye-ye----rk--eG~~~CP 63 (1079)
.....+|.-|=.++---.+=. +|..|..|| ||.|-.|-+ |+ || --.-|||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 345569999999974332322 799999994 999999974 33 43 2236999
Q ss_pred CCcccc--ccccCC
Q 001430 64 QCKTRY--KKHKGS 75 (1079)
Q Consensus 64 qCkt~Y--kr~kgs 75 (1079)
.|+-.| ++++|-
T Consensus 178 ~CGP~~~l~~~~g~ 191 (750)
T COG0068 178 KCGPHLFLVNHDGE 191 (750)
T ss_pred ccCCCeEEEcCCCc
Confidence 999755 444443
No 137
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=34.49 E-value=21 Score=31.79 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=24.6
Q ss_pred cCCccccccCCC---cccCCCCCccccCCCCCCC
Q 001430 15 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 45 (1079)
Q Consensus 15 ~~~~~CqiCgd~---vg~~~~G~~fvaC~eC~fp 45 (1079)
..|-+|.-|+.- +...+||...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 457799999844 4446899999999999985
No 138
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.26 E-value=10 Score=32.46 Aligned_cols=7 Identities=43% Similarity=1.312 Sum_probs=3.4
Q ss_pred CCCCCcc
Q 001430 61 SCPQCKT 67 (1079)
Q Consensus 61 ~CPqCkt 67 (1079)
.||+|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4555543
No 139
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=34.08 E-value=21 Score=44.48 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=24.9
Q ss_pred cCCccccccCCCcccCCCCCc-----------ccc-----CCCCCCCcchhhHHHH
Q 001430 15 VGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYE 54 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~~~~G~~-----------fva-----C~eC~fpvCr~Cyeye 54 (1079)
...++|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 196 ~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 196 KKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred CCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 455689999999444444222 222 0123799999999654
No 140
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=33.80 E-value=36 Score=27.76 Aligned_cols=43 Identities=23% Similarity=0.716 Sum_probs=31.4
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCcc
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 67 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt 67 (1079)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898888 33333333 2 679999999995544 67789999985
No 141
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=33.79 E-value=19 Score=30.88 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.6
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCc
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
.-+|..||.++.++. ...-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 457999999995443 23358898898865
No 142
>PRK11827 hypothetical protein; Provisional
Probab=33.62 E-value=25 Score=31.41 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=23.4
Q ss_pred CcchhhHHHHHhhCCCCCCCCccccccccCCCcccCC
Q 001430 45 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 45 pvCr~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd 81 (1079)
|+|+-=.+|...+..-.|..|+-.|--..|=|-+--|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL~d 48 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLET 48 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCccccCHH
Confidence 4555444454433446788999999777776665444
No 143
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.57 E-value=13 Score=32.83 Aligned_cols=12 Identities=42% Similarity=1.135 Sum_probs=7.0
Q ss_pred CCCCCCcccccc
Q 001430 60 QSCPQCKTRYKK 71 (1079)
Q Consensus 60 ~~CPqCkt~Ykr 71 (1079)
-+||+||.-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 456666666644
No 144
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=33.24 E-value=21 Score=26.98 Aligned_cols=28 Identities=32% Similarity=0.920 Sum_probs=12.0
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhh
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 50 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~C 50 (1079)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998864 357889999999998877
No 145
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=33.06 E-value=94 Score=36.68 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.1
Q ss_pred cCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001430 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 531 hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+| .++.|-+
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYv 180 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYV 180 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHH
Confidence 4558888875443322 35899999999999975 4666644
No 146
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=32.54 E-value=24 Score=36.67 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=40.9
Q ss_pred CcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001430 26 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 26 ~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
-||+..+|-.-+-|.-|+|.-|..=.|-++..-+-.=|+|--+|--
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iD 122 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYID 122 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhh
Confidence 3788888988899999999999999988888888999999999953
No 147
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=31.83 E-value=15 Score=43.21 Aligned_cols=62 Identities=23% Similarity=0.503 Sum_probs=40.3
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcchh-hHHHHHhhCCCCCCCCcccc---ccc--cCCCcccCC
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP-CYEYERKDGNQSCPQCKTRY---KKH--KGSPAILGD 81 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~-CyeyerkeG~~~CPqCkt~Y---kr~--kgsprv~gd 81 (1079)
+--|..||+-+|+...----.+|-. -.=-- =|||--++|.++||-|+.-- ||. -|||-|+.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 4579999999999754444455521 11112 26777899999999998322 322 367888655
No 148
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.01 E-value=30 Score=28.68 Aligned_cols=45 Identities=27% Similarity=0.750 Sum_probs=31.4
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHHHHH-----hhCCCCCCCCcc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER-----KDGNQSCPQCKT 67 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer-----keG~~~CPqCkt 67 (1079)
+|+|||. ..+++..|.|..|.--+=..|..... .++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 56677899999998766666765442 234567777653
No 149
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.36 E-value=31 Score=37.80 Aligned_cols=39 Identities=23% Similarity=0.595 Sum_probs=25.8
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.+.|.+||..+..+ ...+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~------------~~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALS------------HWGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCC------------CCcccHHHHhhCCcc-cCcCccCCCc
Confidence 45799999887332 124788887654332 3589999865
No 150
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=30.35 E-value=34 Score=30.27 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=11.5
Q ss_pred hhCCCCCCCCccccc------cccCCCcccCCC
Q 001430 56 KDGNQSCPQCKTRYK------KHKGSPAILGDR 82 (1079)
Q Consensus 56 keG~~~CPqCkt~Yk------r~kgsprv~gd~ 82 (1079)
.+.|..-|=|-+|-| -..|+=||.|.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~ 47 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEP 47 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCC
Confidence 345555555555544 356777888873
No 151
>PRK07219 DNA topoisomerase I; Validated
Probab=30.29 E-value=25 Score=45.78 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=31.0
Q ss_pred CccccccCCCcccC--CCCCccccCCCCCCCcchhhHHHHH----hhCCCCCCCCccccccc
Q 001430 17 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyer----keG~~~CPqCkt~Ykr~ 72 (1079)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664332 3455 88885 6777753332211 12347899998866543
No 152
>PRK14973 DNA topoisomerase I; Provisional
Probab=29.63 E-value=30 Score=45.62 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=31.7
Q ss_pred ccccccCCCcccC--CCCCccccCCCCCCCcchhhHHHHHh-hC-----CCCCCCCccc
Q 001430 18 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 68 (1079)
Q Consensus 18 ~~CqiCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerk-eG-----~~~CPqCkt~ 68 (1079)
..|..||.++-.. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999876432 3454 99996 66888855544322 12 3689999973
No 153
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=14 Score=42.98 Aligned_cols=45 Identities=29% Similarity=0.737 Sum_probs=37.4
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCcccc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Y 69 (1079)
+|.||-+=+-.+- -=-||+-..|+.|.--.-++||..||-|++.-
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 7889987765542 12389999999999999999999999999876
No 154
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=28.87 E-value=34 Score=28.82 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=26.2
Q ss_pred cccccCCCcccCCCCCccccCCCCC-CCcchhhHHHHHhhCC
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGN 59 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~ 59 (1079)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|--++
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~~ 38 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPSN 38 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCCC
Confidence 6999999984 2556666675 9999999965554333
No 155
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.82 E-value=7.2e+02 Score=29.43 Aligned_cols=19 Identities=21% Similarity=0.601 Sum_probs=14.2
Q ss_pred hhcccccccccccccchhh
Q 001430 909 MRWSGVGIDEWWRNEQFWV 927 (1079)
Q Consensus 909 ~rwsGvsi~~wWrneqfW~ 927 (1079)
.+-.|-.++.||....|+-
T Consensus 172 L~~NGS~Ik~WW~~HHy~s 190 (330)
T PF07851_consen 172 LIVNGSRIKGWWVFHHYIS 190 (330)
T ss_pred hccCCCcchHHHHHHHHHH
Confidence 3456788899998887763
No 156
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=28.72 E-value=28 Score=27.92 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=19.6
Q ss_pred CCcc--ccccCCCcccCCCCCccccCCCCCC
Q 001430 16 GGQV--CQICGDNVGKTVDGNPFVACDVCAF 44 (1079)
Q Consensus 16 ~~~~--CqiCgd~vg~~~~G~~fvaC~eC~f 44 (1079)
.+.. |.+||.......||- .-|.+|+-
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 4445 999999988888886 44777764
No 157
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=28.62 E-value=35 Score=43.80 Aligned_cols=58 Identities=26% Similarity=0.707 Sum_probs=42.8
Q ss_pred ccCCccccccCCCcccCCC----CCccccCCCCC--------------------CCcchhhHH-HH----Hhh--CCCCC
Q 001430 14 NVGGQVCQICGDNVGKTVD----GNPFVACDVCA--------------------FPVCRPCYE-YE----RKD--GNQSC 62 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~----G~~fvaC~eC~--------------------fpvCr~Cye-ye----rke--G~~~C 62 (1079)
...-.+|.-|-+++ .|.+ +=+|.-|..|| |+.|..|.. |+ |+- ---+|
T Consensus 65 ppD~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C 143 (711)
T TIGR00143 65 PADVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIAC 143 (711)
T ss_pred CCchhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccC
Confidence 34567999999998 4432 55899999994 999999984 32 332 22589
Q ss_pred CCCccccccc
Q 001430 63 PQCKTRYKKH 72 (1079)
Q Consensus 63 PqCkt~Ykr~ 72 (1079)
|.|+=|+.-.
T Consensus 144 ~~Cgp~l~l~ 153 (711)
T TIGR00143 144 PRCGPQLNFV 153 (711)
T ss_pred CCCCcEEEEE
Confidence 9999988643
No 158
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=28.31 E-value=66 Score=37.22 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=27.6
Q ss_pred CCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEe
Q 001430 549 TNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ 589 (1079)
Q Consensus 549 tngp~il~lDcDh~i~~~~~Lr~amcff~Dp~~g~~v~~VQ 589 (1079)
+..+||+++|.|++ |.+++-+....+..--....+.+||=
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~Vv 165 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFVV 165 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEEE
Confidence 57899999999997 78777766666553222334666663
No 159
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=27.96 E-value=35 Score=40.83 Aligned_cols=34 Identities=24% Similarity=0.610 Sum_probs=22.7
Q ss_pred ccccCCCCCCCcchhhHHHHHhh-CCCCCCCCccccccc
Q 001430 35 PFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTRYKKH 72 (1079)
Q Consensus 35 ~fvaC~eC~fpvCr~Cyeyerke-G~~~CPqCkt~Ykr~ 72 (1079)
..++|+||+--+=+| ..+. ....||+|++.-.|+
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 368899998764333 1122 335799999998665
No 160
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.96 E-value=30 Score=30.79 Aligned_cols=29 Identities=21% Similarity=0.626 Sum_probs=20.8
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPV 46 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpv 46 (1079)
---+|.-||.+-.+. .|| .+-|.||||.|
T Consensus 19 miYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 19 MIYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEEecccccccccc-CCC-cEehhhcchHH
Confidence 345898899885443 344 47899999976
No 161
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=23 Score=31.73 Aligned_cols=17 Identities=41% Similarity=1.015 Sum_probs=14.6
Q ss_pred HhhCCCCCCCCcccccc
Q 001430 55 RKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 55 rkeG~~~CPqCkt~Ykr 71 (1079)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 162
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.62 E-value=15 Score=26.59 Aligned_cols=13 Identities=38% Similarity=0.928 Sum_probs=6.1
Q ss_pred hhCCCCCCCCccc
Q 001430 56 KDGNQSCPQCKTR 68 (1079)
Q Consensus 56 keG~~~CPqCkt~ 68 (1079)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444445555543
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.59 E-value=28 Score=42.81 Aligned_cols=52 Identities=23% Similarity=0.546 Sum_probs=32.8
Q ss_pred CCCCC-ccccCCCCCCC-cchhhH---HHHHhhCCCCCCCCccccccccCCCcccCC
Q 001430 30 TVDGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPAILGD 81 (1079)
Q Consensus 30 ~~~G~-~fvaC~eC~fp-vCr~Cy---eyerkeG~~~CPqCkt~Ykr~kgsprv~gd 81 (1079)
+-.|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=.++
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 44555 47778888765 466663 333556666677777777766666665433
No 164
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=27.15 E-value=48 Score=36.65 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=54.3
Q ss_pred hccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccccCccccccCcccccccchHHHHHHHHHCCCEEEEeCCC
Q 001430 720 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPK 799 (1079)
Q Consensus 720 ~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~Ye~~T~wG~eiGW~ygsVTED~~tg~rL~~rGWrsvY~~p~ 799 (1079)
.+|....+.++.+..++|++. ..| || | .||-+++.||...|.+.......
T Consensus 111 ~~Gg~~~~~k~~f~~VNGf~n----------------------~f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 111 YFGGVLALTREQFRKVNGFSN----------------------AYW----GW--G--GEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred ccccceeeEHHHHHHhCCcCC----------------------cCc----cC--C--cchHHHHHHHHHCCCeEEeccCc
Confidence 467777888889999999875 233 34 2 38999999999999887666422
Q ss_pred CC-c--c-------cccCCCCHHHHHHHHHHhhccchhHh
Q 001430 800 RP-A--F-------KGSAPINLSDRLNQVLRWALGSVEIL 829 (1079)
Q Consensus 800 ~~-a--f-------~G~aPetl~~~lkQR~RWA~G~lQIl 829 (1079)
.. . + ....|.-+.....++.||+..++..+
T Consensus 161 ~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 161 TGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred ccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 11 0 0 12344455666677888888777655
No 165
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.91 E-value=47 Score=38.49 Aligned_cols=44 Identities=23% Similarity=0.623 Sum_probs=28.9
Q ss_pred CCccccccCCCc--c-----cCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001430 16 GGQVCQICGDNV--G-----KTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 16 ~~~~CqiCgd~v--g-----~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
+.+.|.+||..= + ...+|.-+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 345999999881 1 1268989999987764 333334567777653
No 166
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.84 E-value=20 Score=35.64 Aligned_cols=28 Identities=14% Similarity=0.533 Sum_probs=16.1
Q ss_pred ccCCCCCCCcchhhHHHHHhhCC-CCCCCCcccccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 71 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~-~~CPqCkt~Ykr 71 (1079)
.-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466665 334444322 349999987544
No 167
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.73 E-value=16 Score=26.97 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=9.8
Q ss_pred HhhCCCCCCCCccc
Q 001430 55 RKDGNQSCPQCKTR 68 (1079)
Q Consensus 55 rkeG~~~CPqCkt~ 68 (1079)
..++...||+|+++
T Consensus 12 ~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 12 IDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccccChhhCCC
Confidence 36667778888765
No 168
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=26.72 E-value=33 Score=35.45 Aligned_cols=45 Identities=31% Similarity=0.768 Sum_probs=33.4
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcch-hhHHHHHhhCCCCCCCCcccccccc
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCR-PCYEYERKDGNQSCPQCKTRYKKHK 73 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr-~CyeyerkeG~~~CPqCkt~Ykr~k 73 (1079)
.++|-||-..+- ---|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 468999977542 3569999999996 899443 33799999876554
No 169
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=26.50 E-value=9.6e+02 Score=33.54 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=34.6
Q ss_pred cEEEEecCCCchhhHHH---------hhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHH
Q 001430 385 VSCYVSDDGAAMLTFEA---------LSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKRE 455 (1079)
Q Consensus 385 l~~yvsDDG~~~ltf~a---------l~Eaa~FA~~WvPFCkk~~iepRaPe~yF~~k~d~~~~~~~~~fv~err~mkre 455 (1079)
+.|.+=+.|++.|..+- ..|+-..|..-+ +|-.+.-..+||..-.. +++..|-|.-=-.+||+.
T Consensus 1779 iQc~LdkeGAs~LV~dlIi~~~s~~IF~eaI~LaiaLL-----egGN~~iQ~sf~~~~~~--d~~se~FFKv~~drmk~A 1851 (2706)
T KOG3533|consen 1779 IQCKLDKEGASDLVTDLIIMEPSREIFLEAIHLAIALL-----EGGNTKIQHSFYMRMKQ--DDKSEPFFKVILDRMKTA 1851 (2706)
T ss_pred HHhhccccchhhhhHHHhhcCCcHHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHh--hcccchHHHHHHHHHHHH
Confidence 45888888998875532 445555554333 23233333445544321 233344443334456655
Q ss_pred HHHHH
Q 001430 456 YEEFK 460 (1079)
Q Consensus 456 Yee~k 460 (1079)
-.|.|
T Consensus 1852 Qqeik 1856 (2706)
T KOG3533|consen 1852 QQEIK 1856 (2706)
T ss_pred HHHHh
Confidence 55554
No 170
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=26.32 E-value=18 Score=35.76 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=15.8
Q ss_pred ccCCCCCCCcchhhHHHHHhhCC-CCCCCCcccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRY 69 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~-~~CPqCkt~Y 69 (1079)
.-|+.|+ ++++..+-. -.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCC
Confidence 3466666 244444443 5699999764
No 171
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=26.16 E-value=34 Score=44.83 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=32.6
Q ss_pred cCCccccccCCCccc---CCCCCccccCCCCCCCcchhhHHHHH-----------hhCCCCCCCCccccccccC
Q 001430 15 VGGQVCQICGDNVGK---TVDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 74 (1079)
Q Consensus 15 ~~~~~CqiCgd~vg~---~~~G~~fvaC~eC~fpvCr~Cyeyer-----------keG~~~CPqCkt~Ykr~kg 74 (1079)
.....|..||..-.+ ...| .|++|. +||-|+-=...++ ......||.|+......+|
T Consensus 590 ~~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 590 VTEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred ccCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 345689999864222 2345 599994 5777742111111 1225689999876654433
No 172
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.77 E-value=42 Score=42.74 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=6.6
Q ss_pred CCCCCCCcccc
Q 001430 59 NQSCPQCKTRY 69 (1079)
Q Consensus 59 ~~~CPqCkt~Y 69 (1079)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45677776543
No 173
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.53 E-value=24 Score=34.19 Aligned_cols=44 Identities=43% Similarity=0.682 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccccccCC-------CCCCCCCCCCCccceeeecccCCC
Q 001430 453 KREYEEFKIRINGLVAKAQKIPEEGWVMQDG-------TPWPGNNTRDHPGMIQVFLGENGG 507 (1079)
Q Consensus 453 kreYee~k~ri~~L~~~~~~~p~e~w~m~dg-------t~w~g~~~rdhp~~iqv~l~~~g~ 507 (1079)
|-||+|+|+ +. -++|.|+|= +.|.-.+--.||.+.+-+--++|+
T Consensus 20 k~eyqel~~-------~~----~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKE-------KD----FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHH-------hh----hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 559999875 21 368999874 346555566899988887767774
No 174
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=37 Score=36.38 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=35.6
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCCCCCCCCc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCk 66 (1079)
.--.|.||-+..-.. ....|+--.||.|-+.-.. +.-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 345899999886333 6667899999999988877 889999999
No 175
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.87 E-value=83 Score=28.15 Aligned_cols=50 Identities=24% Similarity=0.503 Sum_probs=36.1
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHhhCC-CCCCCCcc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 67 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CPqCkt 67 (1079)
...+|.-||-.|--.+.+- -.+|..||=-+=+=|+ .-||-+| -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~~-~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAV-KFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCccC-EeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 4458999999986555554 4579999877444466 5678776 57999973
No 176
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.71 E-value=31 Score=27.58 Aligned_cols=11 Identities=45% Similarity=1.440 Sum_probs=9.5
Q ss_pred CCCCCcccccc
Q 001430 61 SCPQCKTRYKK 71 (1079)
Q Consensus 61 ~CPqCkt~Ykr 71 (1079)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 177
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.25 E-value=26 Score=27.21 Aligned_cols=24 Identities=33% Similarity=0.858 Sum_probs=11.5
Q ss_pred cccccCCCcccCCCCCccccCCCCCC
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAF 44 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~f 44 (1079)
.|..|+.+-.. +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57788877555 6777665 778875
No 178
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=24.22 E-value=47 Score=41.42 Aligned_cols=41 Identities=29% Similarity=0.613 Sum_probs=24.5
Q ss_pred CccccccCCCcccCCC----------CCcccc--CCCCCCCcchhhHHHHHhhC
Q 001430 17 GQVCQICGDNVGKTVD----------GNPFVA--CDVCAFPVCRPCYEYERKDG 58 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~----------G~~fva--C~eC~fpvCr~CyeyerkeG 58 (1079)
..+|.|||.+--++.+ =.-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 5799999997332221 112333 112379999999954 3444
No 179
>PRK12438 hypothetical protein; Provisional
Probab=24.08 E-value=1.5e+03 Score=30.70 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhh
Q 001430 1012 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLW 1057 (1079)
Q Consensus 1012 g~l~~~~Wvl~nl~Pfl~gL~gR~~~~P~~v~~~s~~la~~~~~lw 1057 (1079)
++.++++=.++...-|+.+++.|+-|.|.+.+..-++.+++...+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555666777888999877765555555444444
No 180
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.01 E-value=33 Score=27.39 Aligned_cols=11 Identities=36% Similarity=1.346 Sum_probs=9.3
Q ss_pred CCCCCcccccc
Q 001430 61 SCPQCKTRYKK 71 (1079)
Q Consensus 61 ~CPqCkt~Ykr 71 (1079)
.||+|+++|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999953
No 181
>PTZ00293 thymidine kinase; Provisional
Probab=23.91 E-value=33 Score=37.71 Aligned_cols=35 Identities=20% Similarity=0.586 Sum_probs=22.5
Q ss_pred ccccccCCCcccC----CCCCc-cccCCCCCCCcchhhHH
Q 001430 18 QVCQICGDNVGKT----VDGNP-FVACDVCAFPVCRPCYE 52 (1079)
Q Consensus 18 ~~CqiCgd~vg~~----~~G~~-fvaC~eC~fpvCr~Cye 52 (1079)
.+|..||.+.-.| .+|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5899999884432 33443 23323444789999995
No 182
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.76 E-value=25 Score=34.83 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=17.5
Q ss_pred ccCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
.-|+.|+ ++++..+-...||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4466665 345554445779999976433
No 183
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.32 E-value=94 Score=26.36 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=28.3
Q ss_pred cccccCCCcccCCCCCccccCCCCCC---CcchhhHHHHHh-hCCCCCCCCc
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCK 66 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeyerk-eG~~~CPqCk 66 (1079)
+|.||-+ +-+++..+..+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 334444457778 4542 144567755444 4467899996
No 184
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.16 E-value=49 Score=28.97 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=9.6
Q ss_pred cccccCCCcccC
Q 001430 19 VCQICGDNVGKT 30 (1079)
Q Consensus 19 ~CqiCgd~vg~~ 30 (1079)
.|..||.+|.+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 688888888775
No 185
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.14 E-value=62 Score=36.35 Aligned_cols=58 Identities=24% Similarity=0.495 Sum_probs=43.6
Q ss_pred CccccccCCCcccCCCCCccccCCCCC-CCc--chhhHHHHHh-hCCCCCCCCccccccccCC
Q 001430 17 GQVCQICGDNVGKTVDGNPFVACDVCA-FPV--CRPCYEYERK-DGNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~~fvaC~eC~-fpv--Cr~Cyeyerk-eG~~~CPqCkt~Ykr~kgs 75 (1079)
+..|.||.++........+-++| .|. -+. =|.|.+-..+ -|+-.|..|++.|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 46899999987655444678999 672 222 4889988876 5779999999999887543
No 186
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.07 E-value=31 Score=35.74 Aligned_cols=43 Identities=37% Similarity=0.872 Sum_probs=25.4
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHH-HhhCCCCCCCCcc
Q 001430 16 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 67 (1079)
Q Consensus 16 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CPqCkt 67 (1079)
.+..|.-||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4567999984 46999988841 122211110 1234578999985
No 187
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.90 E-value=42 Score=33.18 Aligned_cols=34 Identities=26% Similarity=0.687 Sum_probs=25.4
Q ss_pred CCCCccccCCCCCCC--cchhhHHHHHhhCCCCCCCCcccccc
Q 001430 31 VDGNPFVACDVCAFP--VCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 31 ~~G~~fvaC~eC~fp--vCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
+-|-.-..|.+|+.- ++..| +|..||+|..++++
T Consensus 37 ~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~ 72 (111)
T PF14319_consen 37 ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATE 72 (111)
T ss_pred cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHH
Confidence 346667889888753 55566 47899999999965
No 188
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.51 E-value=4.8e+02 Score=28.19 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 001430 978 LIPPTTLLVINLVGVVAGVSYAINS 1002 (1079)
Q Consensus 978 ~iP~~~LlilnliaIv~Gi~r~i~~ 1002 (1079)
++.-..|+++.+.+++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777888888888877654
No 189
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=22.44 E-value=39 Score=40.66 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=22.6
Q ss_pred ccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
++|++|+--+..|=- +..+...||+|+++-.|+
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCC
Confidence 889999987554311 122345699999998765
No 190
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.30 E-value=41 Score=45.19 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=30.6
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCc-----chhhHHHHHh--hCCCCCCCCccccccc
Q 001430 18 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYERK--DGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 18 ~~CqiCgd~vg~~~~G~~fvaC~eC~fpv-----Cr~Cyeyerk--eG~~~CPqCkt~Ykr~ 72 (1079)
..|.-||..+-. .-|.+||-+. |..|=-.--. .+..-||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 578889986421 2788888664 7777531111 2355799998876543
No 191
>PRK08359 transcription factor; Validated
Probab=22.11 E-value=28 Score=37.23 Aligned_cols=30 Identities=37% Similarity=1.050 Sum_probs=19.6
Q ss_pred ccccccCCCcccC-----CCCCccccCCCCCCCcchhhH-HHHH
Q 001430 18 QVCQICGDNVGKT-----VDGNPFVACDVCAFPVCRPCY-EYER 55 (1079)
Q Consensus 18 ~~CqiCgd~vg~~-----~~G~~fvaC~eC~fpvCr~Cy-eyer 55 (1079)
-.|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997322 24443 45778888 6744
No 192
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=22.02 E-value=43 Score=30.37 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.1
Q ss_pred ccccCCCCCCCcchhhHHHHHhhCCCCCCCCccc
Q 001430 35 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 68 (1079)
Q Consensus 35 ~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~ 68 (1079)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 467888888776 23 599999874
No 193
>PF12773 DZR: Double zinc ribbon
Probab=21.94 E-value=59 Score=27.03 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.4
Q ss_pred CccccccCCCcc
Q 001430 17 GQVCQICGDNVG 28 (1079)
Q Consensus 17 ~~~CqiCgd~vg 28 (1079)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 345555555554
No 194
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=49 Score=37.73 Aligned_cols=22 Identities=41% Similarity=1.058 Sum_probs=17.0
Q ss_pred ccCCccccccCCCcccCCCCCccccCCCCC
Q 001430 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCA 43 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~ 43 (1079)
...+..|.-||+- -|++|..|.
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 4566899999854 589998884
No 195
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=21.61 E-value=48 Score=30.53 Aligned_cols=31 Identities=26% Similarity=0.730 Sum_probs=24.4
Q ss_pred cCCccccccCC--Cccc-CCCCCccccCCCCCCC
Q 001430 15 VGGQVCQICGD--NVGK-TVDGNPFVACDVCAFP 45 (1079)
Q Consensus 15 ~~~~~CqiCgd--~vg~-~~~G~~fvaC~eC~fp 45 (1079)
..|-+|.-|+. .|.+ .+||...+-|-+|||-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 45779999984 4544 6789999999999984
No 196
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=51 Score=38.95 Aligned_cols=50 Identities=26% Similarity=0.604 Sum_probs=29.3
Q ss_pred ccCCccccccCCCcccCCCCCccccCCCCCCCcchhhHHHHHh------hC--CCCCCCCccccccccCCCccc
Q 001430 14 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK------DG--NQSCPQCKTRYKKHKGSPAIL 79 (1079)
Q Consensus 14 ~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk------eG--~~~CPqCkt~Ykr~kgsprv~ 79 (1079)
..+...|--||..+-...+| +|..|| .|+. ++ --.|++|+..+ +|.+.|+
T Consensus 3 ~~~~~~C~~CGr~~~~~~~~------------lC~dC~-~~~~~~~~ip~~~~v~~C~~Cga~~---~~~~W~~ 60 (355)
T COG1499 3 DASTILCVRCGRSVDPLIDG------------LCGDCY-VETTPLIEIPDEVNVEVCRHCGAYR---IRGRWVD 60 (355)
T ss_pred CCcccEeccCCCcCchhhcc------------ccHHHH-hccCccccCCCceEEEECCcCCCcc---CCCccee
Confidence 34556788888776533332 699999 4432 11 15799999333 2344553
No 197
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=21.35 E-value=67 Score=26.60 Aligned_cols=29 Identities=28% Similarity=0.809 Sum_probs=22.9
Q ss_pred cccccCCCcccCCCCCccccCCCC-CCCcchhhHH
Q 001430 19 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 52 (1079)
Q Consensus 19 ~CqiCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cye 52 (1079)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588888743 24 46789999 7999999994
No 198
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.03 E-value=33 Score=34.99 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.9
Q ss_pred hCCCCCCCCccc
Q 001430 57 DGNQSCPQCKTR 68 (1079)
Q Consensus 57 eG~~~CPqCkt~ 68 (1079)
+..-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344669999976
No 199
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=20.59 E-value=15 Score=36.15 Aligned_cols=29 Identities=24% Similarity=0.609 Sum_probs=15.7
Q ss_pred ccCCCCCCCcchhhHHHHHhhCCCCCCCCccccccc
Q 001430 37 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 72 (1079)
Q Consensus 37 vaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~ 72 (1079)
+-|+.|+.. |+..+..-.||+|+.+..+.
T Consensus 71 ~~C~~Cg~~-------~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 71 ARCRDCGHE-------FEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEETTTS-E-------EECHHCCHH-SSSSSS-EEE
T ss_pred EECCCCCCE-------EecCCCCCCCcCCcCCCcEE
Confidence 457666643 33334445599999986543
No 200
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.57 E-value=74 Score=23.63 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=12.9
Q ss_pred ccccCCCcccCCCCCccccCCCCCC
Q 001430 20 CQICGDNVGKTVDGNPFVACDVCAF 44 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC~f 44 (1079)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 45566655433444444 3767765
No 201
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.55 E-value=45 Score=42.83 Aligned_cols=44 Identities=32% Similarity=0.739 Sum_probs=0.0
Q ss_pred ccccCCCcccCCCCCccccCCCC----------CCCcchhhHHHHHhhCCCCCCCCccccccccCC
Q 001430 20 CQICGDNVGKTVDGNPFVACDVC----------AFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGS 75 (1079)
Q Consensus 20 CqiCgd~vg~~~~G~~fvaC~eC----------~fpvCr~CyeyerkeG~~~CPqCkt~Ykr~kgs 75 (1079)
|+-||-- .-|..| +-..|+-|- |. +.--+.||+|++.+-+..|.
T Consensus 438 C~~Cg~v----------~~Cp~Cd~~lt~H~~~~~L~CH~Cg-~~-~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYI----------AECPNCDSPLTLHKATGQLRCHYCG-YQ-EPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCc----------ccCCCCCcceEEecCCCeeEeCCCC-CC-CCCCCCCCCCCCCeeEEecc
No 202
>PF04641 Rtf2: Rtf2 RING-finger
Probab=20.33 E-value=69 Score=36.00 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=37.5
Q ss_pred CccccccCCCcccCCCCC-ccccCCCCCCCcchhhHHHHHhhCCCCCCCCcccccc
Q 001430 17 GQVCQICGDNVGKTVDGN-PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 71 (1079)
Q Consensus 17 ~~~CqiCgd~vg~~~~G~-~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Ykr 71 (1079)
.-+|.|++... +|. .||+=--||=-+|..|.+-- + .+..||.|.++|..
T Consensus 113 ~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 113 RFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred eeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 34899998776 444 58888888988888888544 4 45679999999964
No 203
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=20.23 E-value=1.1e+03 Score=27.09 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=29.4
Q ss_pred hhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHHHh
Q 001430 535 AGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF 575 (1079)
Q Consensus 535 AGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~amcf 575 (1079)
|.+=|.||-. ++-....+|+-+|+|-+-..|+.|+..|..
T Consensus 128 AraRN~LL~~-aL~p~~swVlWlDaDIv~~P~~lI~dli~~ 167 (269)
T PF03452_consen 128 ARARNFLLSS-ALGPWHSWVLWLDADIVETPPTLIQDLIAH 167 (269)
T ss_pred HHHHHHHHHh-hcCCcccEEEEEecCcccCChHHHHHHHhC
Confidence 4455777653 333488999999999998788888877654
No 204
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.19 E-value=34 Score=32.94 Aligned_cols=10 Identities=40% Similarity=1.374 Sum_probs=7.8
Q ss_pred CCCCCCcccc
Q 001430 60 QSCPQCKTRY 69 (1079)
Q Consensus 60 ~~CPqCkt~Y 69 (1079)
--||.||...
T Consensus 77 SRCP~CKSE~ 86 (97)
T COG3357 77 SRCPKCKSEW 86 (97)
T ss_pred ccCCcchhhc
Confidence 5799999754
No 205
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=20.17 E-value=2e+02 Score=37.03 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.6
Q ss_pred cCchhhhHHHHHHHhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001430 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 573 (1079)
Q Consensus 531 hh~KAGalNallrvSavltngp~il~lDcDh~i~~~~~Lr~am 573 (1079)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+| .++.|-+
T Consensus 146 r~gk~egm~~g~~la~-~~g~~yvgfidadny~p--g~v~ey~ 185 (694)
T PRK14502 146 RSGKAEGMILGIILTM-FSGRDYVGFIDTDNYIP--GAVWEYA 185 (694)
T ss_pred ecCcchHHHHHHHHHH-hcCCceEeEeeccCCCC--chHHHHH
Confidence 4558888875443322 47899999999999975 4666644
No 206
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=20.02 E-value=33 Score=34.75 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=32.5
Q ss_pred cCCccccccCCC--cccCCCC-CccccCCCCCCCcchhhHHHHHhhCCCCCCCCccccc
Q 001430 15 VGGQVCQICGDN--VGKTVDG-NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 70 (1079)
Q Consensus 15 ~~~~~CqiCgd~--vg~~~~G-~~fvaC~eC~fpvCr~CyeyerkeG~~~CPqCkt~Yk 70 (1079)
..+-.|.-||.. +....++ -.|.+| +.||.||-=. -.+...+.||||..+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~--~~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTE--KPKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceee--cCCcccccCCcCCCcee
Confidence 345678889943 3333332 379999 7899998432 22333355999997444
Done!