Query 001431
Match_columns 1079
No_of_seqs 369 out of 2008
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 21:10:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001431.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_31-35//hhsearch_pdb/001431hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 455.9 49.7 495 271-1036 66-578 (802)
2 1weo_A Cellulose synthase, cat 1.0 1 1 321.3 9.3 90 3-93 2-91 (93)
3 2z86_A Chondroitin synthase; G 1.0 1 1 130.2 17.6 128 345-597 89-217 (625)
4 2d7i_A Polypeptide N-acetylgal 1.0 1 1 125.3 14.0 116 345-579 108-224 (570)
5 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 122.7 10.6 113 345-579 62-174 (501)
6 1xhb_A Polypeptide N-acetylgal 1.0 1 1 117.6 18.6 117 344-579 24-143 (472)
7 2z86_A Chondroitin synthase; G 1.0 1 1 112.8 12.6 126 345-597 371-497 (625)
8 1qg8_A Protein (spore coat pol 1.0 1 1 111.7 7.4 124 349-595 1-129 (255)
9 3l7i_A Teichoic acid biosynthe 1.0 1 1 105.8 0.0 117 349-590 2-118 (729)
10 3bcv_A Putative glycosyltransf 1.0 1 1 103.1 13.3 111 346-579 2-112 (240)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=455.88 Aligned_cols=495 Identities=22% Similarity=0.347 Sum_probs=377.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 47999999999999998873046403-----5899999999999999999984216543134510566875421148999
Q 001431 271 YRMVIFLRLIILGIFLYYRIKNPVHN-----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEP 345 (1079)
Q Consensus 271 yR~~i~~~l~~l~~~l~wRi~~~~~~-----a~~lWl~~~~~Ei~f~~~wil~q~~kw~Pv~R~~~~drL~~r~e~~~~~ 345 (1079)
..+++++.+++.+.|++||++.+++. ..++|+.++++|+++.+.|++..+..|.|..|.+.++ ..+
T Consensus 66 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~~ 136 (802)
T 4hg6_A 66 RFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQP 136 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCC
T ss_conf 78999999999999999986600677530589999999999999999999999999836567888898---------985
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99973169993689999997999999999883979999838999059983142688654488742211233321788899
Q 001431 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 346 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepRa 425 (1079)
+++|.|+|+||||| |++.++.+|+.|++++|||.+++.++|.|||.++-|.+.
T Consensus 137 ~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------ 189 (802)
T 4hg6_A 137 EELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------ 189 (802)
T ss_dssp TTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------
T ss_pred CCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC------------------------
T ss_conf 67984899999799---989999999999984669998289999989987642234------------------------
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 11111001232348788135999999999999999999776764205873443346899899998888931001001469
Q 001431 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~~ 505 (1079)
..|+.+++... .+++ ++.+.++
T Consensus 190 ---------------~d~~i~~~~~~---~~~~----l~~~~~~------------------------------------ 211 (802)
T 4hg6_A 190 ---------------PDPELAQKAQE---RRRE----LQQLCRE------------------------------------ 211 (802)
T ss_dssp ---------------SSHHHHHHHHH---HHHH----HHHHHHH------------------------------------
T ss_pred ---------------CCHHHHHHHHH---HHHH----HHHHHHH------------------------------------
T ss_conf ---------------88789999886---6699----9999985------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCCE
Q ss_conf 99788889878389998025999886740225699998600257997899943899879369999999844-28999941
Q 001431 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 584 (1079)
Q Consensus 506 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff-~DP~~g~~ 584 (1079)
.++.|+.|++ +++.||||+|.+++. ++++||+.+|||++ ..|++|++.+.+| .|| +
T Consensus 212 ----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp----~ 268 (802)
T 4hg6_A 212 ----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP----D 268 (802)
T ss_dssp ----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----S
T ss_pred ----------CCCEEEEECC----CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----C
T ss_conf ----------6947999268----877636899999996----59999999999988-18589999999984099----8
Q ss_pred EEEEECCCCCCCCCCC-------CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999037202499964-------201110014454330222367885201357102233101789999989999987544
Q 001431 585 VCYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSS 657 (1079)
Q Consensus 585 v~~VQ~PQ~F~nid~~-------Dry~n~~~vFfdi~~~glDg~qgp~yvGTg~vfRR~ALyg~~p~~~~~~~~~~~~~~ 657 (1079)
++.||+++.+.|.++. .++.+.+..|+.....+.+.+++++++|+++++||+++.
T Consensus 269 v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~------------------ 330 (802)
T 4hg6_A 269 LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD------------------ 330 (802)
T ss_dssp CCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH------------------
T ss_pred EEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH------------------
T ss_conf 59996567976785576544477651678999988887547643884542664032499999------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 34788655777676688754678888999765430122100258887604677665778977506418899867654099
Q 001431 658 LFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGG 737 (1079)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG 737 (1079)
++||
T Consensus 331 ----------------------------------------------------------------------------~vGg 334 (802)
T 4hg6_A 331 ----------------------------------------------------------------------------EAGG 334 (802)
T ss_dssp ----------------------------------------------------------------------------HHTT
T ss_pred ----------------------------------------------------------------------------HCCC
T ss_conf ----------------------------------------------------------------------------7088
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99987647699998782044655446545435821354443299999998789789994689984335679799999987
Q 001431 738 VPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQ 817 (1079)
Q Consensus 738 ~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~ygsITED~~TslrLh~~GWrsvY~~p~~~af~G~aP~tl~~~lkQ 817 (1079)
++. .+++||.+++++++.+||+++|++.. .+++.+|+++.++++|
T Consensus 335 f~~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~--~~~~~~p~t~~~~~~Q 379 (802)
T 4hg6_A 335 FAG---------------------------------ETITEDAETALEIHSRGWKSLYIDRA--MIAGLQPETFASFIQQ 379 (802)
T ss_dssp CCC---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCC--CEEECCCCSHHHHHHH
T ss_pred CCC---------------------------------CCCCHHHHHHHHHHHCCCEEEEECCC--EEEECCCCCHHHHHHH
T ss_conf 678---------------------------------88030999999999769959993688--7996688899999999
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 78872120357662045221135888883330465566656656899999999999999718964544205899999999
Q 001431 818 VLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISL 897 (1079)
Q Consensus 818 R~RWA~G~lQIl~sr~~Pl~~g~~~~Ltl~QRL~Yl~~~ly~l~slp~liy~llPil~Ll~Gi~iip~~s~~~~l~fi~l 897 (1079)
|.||++|.+|+++. ++|++ .+++++.||+.|+...++++.+++.++++++|++++++++.++......++.+++..
T Consensus 380 r~RW~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~ 455 (802)
T 4hg6_A 380 RGRWATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGY 455 (802)
T ss_dssp HHHHHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHH-HCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99997008999988-59234---689989999999999999999999999999999999996787633899999999999
Q ss_pred HH-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 99-9999999864303642322123431221113579999999999999-739877715377888888775310201241
Q 001431 898 FL-SIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKV-LAGIDTNFTVTSKASDEDGDFTELYMFKWT 975 (1079)
Q Consensus 898 fl-s~~~~~iLe~~wsG~si~~wWrneqfW~I~~vsa~LfAvl~aLlk~-L~g~~~~F~VTpK~~~~d~~~~~ly~f~ws 975 (1079)
++ ...+...+ ..... ..|| ++.++.+ .. ...+.+++.. +.+++.+|.||+|+...+..+ + +
T Consensus 456 ~l~~~~~~~~~---~~~~r-~~~~-~~l~~~~----~~-~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~~-----~-~- 518 (802)
T 4hg6_A 456 LAVSFLVQNAL---FARQR-WPLV-SEVYEVA----QA-PYLARAIVTTLLRPRSARFAVTAKDETLSENY-----I-S- 518 (802)
T ss_dssp HHHHHHHHHHH---HTTTS-CTTH-HHHHHHH----HH-HHHHHHHHHHHHSTTCCCCCCCCCCCCCSSCC-----B-C-
T ss_pred HHHHHHHHHHH---HCCCH-HHHH-HHHHHHH----HH-HHHHHHHHHHHHCCCCCCCEECCCCCCCCCCC-----H-H-
T ss_conf 99999999999---56747-9999-9999999----99-99999999999188898202779976566531-----2-2-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCC
Q ss_conf 004799999999999999999998832888874157999999999998999998761---2789
Q 001431 976 TLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM---GRQN 1036 (1079)
Q Consensus 976 ~L~iP~~~LlilnLiaiv~Gi~r~i~~~~~~w~~l~g~lv~~~Wvi~nL~Pfl~gL~---gR~~ 1036 (1079)
.++.|++++++++++++++|+++..... .+..+.+++++|.++|++.+..++. +|+.
T Consensus 519 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~ 578 (802)
T 4hg6_A 519 PIYRPLLFTFLLCLSGVLATLVRWVAFP----GDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQ 578 (802)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHHHHHHHTTTBCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6899999999999999999999996067----76342001159999999999999999745887
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=321.33 Aligned_cols=90 Identities=60% Similarity=1.279 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88887876446658875443477754578999300389999974512389898507988988700011346887545998
Q 001431 3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR 82 (1079)
Q Consensus 3 ~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ 82 (1079)
|.|++++|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD- 80 (93)
T 1weo_A 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD- 80 (93)
T ss_dssp CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 8777788752005887261145743547789888763006773518899999852674055458762233688876666-
Q ss_pred CCCCCCCCCCC
Q ss_conf 76788888666
Q 001431 83 EEDGDADDGAS 93 (1079)
Q Consensus 83 e~e~~~dd~e~ 93 (1079)
|+|+++||+++
T Consensus 81 e~e~d~dD~~~ 91 (93)
T 1weo_A 81 EDEEDIDSGPS 91 (93)
T ss_dssp CCCCCSCCCCS
T ss_pred CCCCCCCCCCC
T ss_conf 44465332445
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=130.22 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=98.2
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99997316999368999999799999999988397999983899905998314268865448874221123332178889
Q 001431 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepR 424 (1079)
+...|.|+|+|||+| | +..+..|+.|+++.+||. .+.++|.|||.++-|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~-~~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---R-AKILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---C-HHHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred CCCCCCEEEEEECCC---C-HHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHHH--------------------
T ss_conf 346982799990388---5-788999999998436579-869999967983207999998--------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 91111100123234878813599999999999999999977676420587344334689989999888893100100146
Q 001431 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~ 504 (1079)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------HH-------------------------------------
T ss_conf -----------------------------------------56-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 9997888898783899980259998867402256999986002579978999438998793699999998442-899994
Q 001431 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~-DP~~g~ 583 (1079)
.-+++.|+.+++ +.+.||+|+|.+++. +.|+||+.+|+|+. ..|++|.+.+..|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEEECC----CCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf ---------317829998678----774306899999986----88478999789877-79799999999985598----
Q ss_pred EEEEEECCCCCCCC
Q ss_conf 18999037202499
Q 001431 584 HVCYVQFPQRFDGI 597 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~ni 597 (1079)
.++.|+..+.+.+.
T Consensus 204 ~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 204 NVALIGPRKYIDTS 217 (625)
T ss_dssp TEEEECCEEEECCT
T ss_pred CEEEEEEEEECCCC
T ss_conf 63999855651674
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=125.34 Aligned_cols=116 Identities=20% Similarity=0.138 Sum_probs=90.5
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999973169993689999997999999999883979999838999059983142-6886544887422112333217888
Q 001431 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWVPFCKKYNIEP 423 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt-f~al~Ea~~FA~~WvPfCkk~~Iep 423 (1079)
+..+|.|.|.||||| |+...+.+||.|+++..||...+.+.|.|||...-| .+.+
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l--------------------- 163 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPL--------------------- 163 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH---------------------
T ss_conf 888997599999789---87899999999998358745767999998999837889999---------------------
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 99111110012323487881359999999999999999997767642058734433468998999988889310010014
Q 001431 424 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 503 (1079)
Q Consensus 424 RaPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~ 503 (1079)
+++ ++
T Consensus 164 ---------------------------------~~~-------~~----------------------------------- 168 (570)
T 2d7i_A 164 ---------------------------------EDY-------MA----------------------------------- 168 (570)
T ss_dssp ---------------------------------HHH-------HT-----------------------------------
T ss_pred ---------------------------------HHH-------HH-----------------------------------
T ss_conf ---------------------------------999-------97-----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 6999788889878389998025999886740225699998600257997899943899879369999999844289
Q 001431 504 ENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 504 ~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~DP 579 (1079)
..|++.++..+++.| +++|+|.+++. +.|+||+.||+|.. ..|++|.+.+-.+.+.
T Consensus 169 ----------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~fLD~D~~-~~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ----------LFPSVRILRTKKREG-----LIRTRMLGASV----ATGDVITFLDSHCE-ANVNWLPPLLDRIARN 224 (570)
T ss_dssp ----------TSTTEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCSHHHHHHHHHC
T ss_pred ----------HCCEEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf ----------478089998998879-----89999999986----67888999759852-2403899999999848
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=122.65 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99997316999368999999799999999988397999983899905998314268865448874221123332178889
Q 001431 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepR 424 (1079)
+..+|.|.|.||||| |+...+..||.|+++..||.....+.|.|||...-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHHHH----------------------
T ss_conf 867997799999696---8689999999999850866335149999789995678999----------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 91111100123234878813599999999999999999977676420587344334689989999888893100100146
Q 001431 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~ 504 (1079)
+.
T Consensus 117 -----------------------------------------~~------------------------------------- 118 (501)
T 2ffu_A 117 -----------------------------------------LG------------------------------------- 118 (501)
T ss_dssp -----------------------------------------GG-------------------------------------
T ss_pred -----------------------------------------HH-------------------------------------
T ss_conf -----------------------------------------84-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999788889878389998025999886740225699998600257997899943899879369999999844289
Q 001431 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~DP 579 (1079)
..|++.|+..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRREG-----LMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCCH-----HHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred ---------CCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf ---------189879998998868-----89999998986----68988999779830-6720799999999839
No 6
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=117.63 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=91.7
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999997316999368999999799999999988397999983899905998314-2688654488742211233321788
Q 001431 344 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML-TFEALSETSEFARKWVPFCKKYNIE 422 (1079)
Q Consensus 344 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l-tf~al~Ea~~FA~~WvPfCkk~~Ie 422 (1079)
.+..+|.|.|.|+||| |+...+..||.|+++.+||.....+.|.|||...- |.+.+.
T Consensus 24 ~~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~------------------- 81 (472)
T 1xhb_A 24 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLE------------------- 81 (472)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHH-------------------
T ss_pred CCCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHHH-------------------
T ss_conf 7867997599999678---878999999999986595767607999977999678999999-------------------
Q ss_pred CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 89911111001232348788135999999999999999999776764205873443346899899998888931001001
Q 001431 423 PRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFL 502 (1079)
Q Consensus 423 pRaPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l 502 (1079)
++ ++
T Consensus 82 -----------------------------------~~-------~~---------------------------------- 85 (472)
T 1xhb_A 82 -----------------------------------SY-------VK---------------------------------- 85 (472)
T ss_dssp -----------------------------------HH-------HH----------------------------------
T ss_pred -----------------------------------HH-------HH----------------------------------
T ss_conf -----------------------------------99-------98----------------------------------
Q ss_pred CCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CC
Q ss_conf 46999788889878-3899980259998867402256999986002579978999438998793699999998442-89
Q 001431 503 GENGGLDAEGNELP-RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 579 (1079)
Q Consensus 503 ~~~g~~d~~~~~lP-~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~-DP 579 (1079)
..| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+. +|
T Consensus 86 -----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 -----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp -----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred -----------HCCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCEE-ECCCHHHHHHHHHHHCC
T ss_conf -----------7798579998898787-----69999999986----15876999889857-67347999999998399
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=112.75 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=93.3
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99997316999368999999799999999988397999983899905998314268865448874221123332178889
Q 001431 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
Q Consensus 345 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepR 424 (1079)
....|.|.|.|+||| ++ ..+..++.|+++.+|| .+.++|.|||...-|.+.+.+
T Consensus 371 ~~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~-------------------- 424 (625)
T 2z86_A 371 LKRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE-------------------- 424 (625)
T ss_dssp CCSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH--------------------
T ss_pred HCCCCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCHHHHHHHHH--------------------
T ss_conf 035971799995789---88-9999999999817699--828999989698649999999--------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 91111100123234878813599999999999999999977676420587344334689989999888893100100146
Q 001431 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 504 (1079)
Q Consensus 425 aPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~ 504 (1079)
+. +
T Consensus 425 -----------------------------------------~~-~----------------------------------- 427 (625)
T 2z86_A 425 -----------------------------------------HY-A----------------------------------- 427 (625)
T ss_dssp -----------------------------------------HH-T-----------------------------------
T ss_pred -----------------------------------------HH-H-----------------------------------
T ss_conf -----------------------------------------88-5-----------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCC
Q ss_conf 999788889878389998025999886740225699998600257997899943899879369999999844-2899994
Q 001431 505 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 583 (1079)
Q Consensus 505 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff-~DP~~g~ 583 (1079)
..|++.++. ++.. .+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+..| .+|
T Consensus 428 ---------~~~~i~~~~-~~n~-----G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~---- 483 (625)
T 2z86_A 428 ---------NHPRVRFIS-QKNK-----GIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL---- 483 (625)
T ss_dssp ---------TCTTEEEEE-ECCC-----CHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEE-CCCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf ---------499389991-7988-----989999999985----67787999889766-28359999999998479----
Q ss_pred EEEEEECCCCCCCC
Q ss_conf 18999037202499
Q 001431 584 HVCYVQFPQRFDGI 597 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~ni 597 (1079)
+++.|.....+.+.
T Consensus 484 ~~~~v~~~~~~~~~ 497 (625)
T 2z86_A 484 SLACVYTTNRNIDR 497 (625)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CEEEEEEEEEEECC
T ss_conf 81399820489879
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=111.69 Aligned_cols=124 Identities=13% Similarity=0.247 Sum_probs=91.1
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 73169993689999997999999999883979999838999059983142688654488742211233321788899111
Q 001431 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepRaPe~ 428 (1079)
|.|.|.||||| ++ ..+..|+.|+++.+|| .+.++|.|||...-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCHHHHHHHH------------------------
T ss_conf 95999997179---77-8999999999856278--649999978997108999999------------------------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 11001232348788135999999999999999999776764205873443346899899998888931001001469997
Q 001431 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~~g~~ 508 (1079)
+.
T Consensus 51 -------------------------------------~~----------------------------------------- 52 (255)
T 1qg8_A 51 -------------------------------------FL----------------------------------------- 52 (255)
T ss_dssp -------------------------------------GG-----------------------------------------
T ss_pred -------------------------------------HH-----------------------------------------
T ss_conf -------------------------------------86-----------------------------------------
Q ss_pred CCCCCCCCCEEEEECCCCCCC----CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 888898783899980259998----867402256999986002579978999438998793699999998442-899994
Q 001431 509 DAEGNELPRLVYVSREKRPGF----QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 583 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrpg~----~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~-DP~~g~ 583 (1079)
.-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.|. +|
T Consensus 53 -----~~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 53 -----NDNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp -----GSTTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred -----HCCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf -----0698899964653-332221466789999999987----58888999689876-28279999999998589----
Q ss_pred EEEEEECCCCCC
Q ss_conf 189990372024
Q 001431 584 HVCYVQFPQRFD 595 (1079)
Q Consensus 584 ~v~~VQ~PQ~F~ 595 (1079)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CCEEEEECEEEE
T ss_conf 905998432899
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=1.00 E-value=1 Score=105.78 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=80.5
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 73169993689999997999999999883979999838999059983142688654488742211233321788899111
Q 001431 349 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 428 (1079)
Q Consensus 349 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepRaPe~ 428 (1079)
|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||..+-|.+.+.+.
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~----------------------- 52 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA----------------------- 52 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHHH-----------------------
T ss_conf 66999997678---78-9999999999827789--8699999789987579999999-----------------------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 11001232348788135999999999999999999776764205873443346899899998888931001001469997
Q 001431 429 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 508 (1079)
Q Consensus 429 YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~~g~~ 508 (1079)
.+ .++
T Consensus 53 ----------------------------~~----------------------------------~~~------------- 57 (729)
T 3l7i_A 53 ----------------------------IK----------------------------------DYD------------- 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------HH----------------------------------HCC-------------
T ss_conf ----------------------------97----------------------------------479-------------
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 88889878389998025999886740225699998600257997899943899879369999999844289999418999
Q 001431 509 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 588 (1079)
Q Consensus 509 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~DP~~g~~v~~V 588 (1079)
+++.|+..++..| .++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+..+.++ ++.+.
T Consensus 58 -------~~i~~i~~~~n~G-----~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~----d~v~~ 116 (729)
T 3l7i_A 58 -------KNIRFIDLDENSG-----HAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT----DGLIA 116 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHCCC----CEEEE
T ss_conf -------9889998888778-----79999999986----66998999889877-7846999999982379----98998
Q ss_pred EC
Q ss_conf 03
Q 001431 589 QF 590 (1079)
Q Consensus 589 Q~ 590 (1079)
..
T Consensus 117 ~~ 118 (729)
T 3l7i_A 117 PI 118 (729)
T ss_dssp --
T ss_pred EE
T ss_conf 66
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=103.11 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99973169993689999997999999999883979999838999059983142688654488742211233321788899
Q 001431 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
Q Consensus 346 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPfCkk~~IepRa 425 (1079)
+..|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||...-|.+.+.+
T Consensus 2 ~~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~--------------------- 54 (240)
T 3bcv_A 2 SLIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD--------------------- 54 (240)
T ss_dssp -CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH---------------------
T ss_pred CCCCCEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHH---------------------
T ss_conf 99984899996689---77-8999999999957689--869999989998678999999---------------------
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 11111001232348788135999999999999999999776764205873443346899899998888931001001469
Q 001431 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 505 (1079)
Q Consensus 426 Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~e~w~m~dgt~wpg~~~rdHp~~iqv~l~~~ 505 (1079)
+ .++
T Consensus 55 ---------------------------------~-------~~~------------------------------------ 58 (240)
T 3bcv_A 55 ---------------------------------Y-------AAQ------------------------------------ 58 (240)
T ss_dssp ---------------------------------H-------HHH------------------------------------
T ss_pred ---------------------------------H-------HHH------------------------------------
T ss_conf ---------------------------------9-------965------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99788889878389998025999886740225699998600257997899943899879369999999844289
Q 001431 506 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 579 (1079)
Q Consensus 506 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDaDh~~~~~~~Lr~amcff~DP 579 (1079)
.|++.++.. +.. .+++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 59 ---------~~~i~~i~~-~n~-----G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 ---------YPNIKVIHK-KNA-----GLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp ---------CSSEEEEEC-CCC-----CHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred ---------CCCEEEEEC-CCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf ---------897899988-999-----949999999997----68999999879875-8889999999999846
Done!