BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001432
         (1079 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V8X|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
           (Tbpa) From Neisserial Meningitidis Serogroup B In
           Complex With Full Length Human Transferrin
          Length = 904

 Score = 32.0 bits (71), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 253 VQATNDDEKLKVYLYFSEAVLNSSAEILNSLNSSQGTLVPINGKNRGNHRFGFMVANISS 312
            Q T D   + V  + ++AV ++        N  Q   +P NGK  GNH++G +  N  +
Sbjct: 323 TQQTFDTRDMTVPAFLTKAVFDA--------NKKQAGSLPGNGKYAGNHKYGGLFTNGEN 374

Query: 313 IAII 316
            A++
Sbjct: 375 GALV 378


>pdb|3V89|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
           (Tbpa) From Neisseria Meningitidis Serogroup B In
           Complex With The C-Lobe Of Human Transferrin
          Length = 904

 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 253 VQATNDDEKLKVYLYFSEAVLNSSAEILNSLNSSQGTLVPINGKNRGNHRFGFMVANISS 312
            Q T D   + V  + ++AV ++        N  Q   +P NGK  GNH++G +  N  +
Sbjct: 323 TQQTFDTRDMTVPAFLTKAVFDA--------NKKQAGSLPGNGKYAGNHKYGGLFTNGEN 374

Query: 313 IAII 316
            A++
Sbjct: 375 GALV 378


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,859,817
Number of Sequences: 62578
Number of extensions: 1054333
Number of successful extensions: 1869
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1869
Number of HSP's gapped (non-prelim): 2
length of query: 1079
length of database: 14,973,337
effective HSP length: 109
effective length of query: 970
effective length of database: 8,152,335
effective search space: 7907764950
effective search space used: 7907764950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)