BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001432
         (1079 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39845|PPSA_BACSU Plipastatin synthase subunit A OS=Bacillus subtilis (strain 168)
            GN=ppsA PE=1 SV=2
          Length = 2561

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 337  DPVTFLYDSQRPAVRLSTTSSTRTRQDSIPILIKFLKPVFGFNSSLISISGGHLQSFQEI 396
            DPV  ++D + P    +T    RT Q++      F+KP   F+ S   +    +    + 
Sbjct: 1116 DPVQRIHD-EVPFTLQTTVLGERTEQEAA---AAFIKP---FDLSQAPLFRAQIVKISDE 1168

Query: 397  RRSIYILEIQANADTVSVNVPENVTGDVAGNKNLPSNVLQVKHYSV 442
            R  + +      +D VSVN+     G++  N+NLP+  +Q K Y+V
Sbjct: 1169 RHLLLVDMHHIISDGVSVNILIREFGELYNNRNLPALRIQYKDYAV 1214


>sp|A2A891|CMTA1_MOUSE Calmodulin-binding transcription activator 1 OS=Mus musculus
           GN=Camta1 PE=2 SV=1
          Length = 1682

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 338 PVTFLYDSQRPAVRLSTTSSTRTRQDSIPILIKFLKPVFGFN-SSLISISGGHLQSFQEI 396
           P  FL D+ +P      T S+ +   +      F+ P      SS  S   GH+++  E 
Sbjct: 616 PSFFLQDASKPLPLEQNTHSSLSESGAA-----FVMPTVKTEASSQTSSCSGHVETRIES 670

Query: 397 RRSIYILEIQANADTVSVNVPENVTGDVAGNKN---LPSNVLQV---KHYSVPTISSTIS 450
             S+++++ QAN   ++      +    A   N   L S  LQ    +HY  P  +  I 
Sbjct: 671 TSSLHLMQFQANFQAMAAEGEVTMETSQAAEGNEVLLKSGELQACGSEHYLQPETNGVIR 730

Query: 451 TFVTAAFVATSVAAGLLTVATSSL 474
           +      + ++V  GL  VA  SL
Sbjct: 731 SAGGVPLLPSNVVQGLYPVAQPSL 754


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,884,133
Number of Sequences: 539616
Number of extensions: 15861021
Number of successful extensions: 39954
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 39261
Number of HSP's gapped (non-prelim): 556
length of query: 1079
length of database: 191,569,459
effective HSP length: 128
effective length of query: 951
effective length of database: 122,498,611
effective search space: 116496179061
effective search space used: 116496179061
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)