Query 001432
Match_columns 1079
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 00:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13753 SWM_repeat: Putative 99.6 1.2E-13 2.6E-18 149.2 19.7 288 83-417 4-306 (317)
2 PF13753 SWM_repeat: Putative 99.2 6.9E-11 1.5E-15 128.0 13.9 226 176-447 8-249 (317)
3 PF06011 TRP: Transient recept 98.5 1.4E-07 3.1E-12 107.3 7.7 361 492-945 33-422 (438)
4 PF13750 Big_3_3: Bacterial Ig 98.3 3.4E-06 7.3E-11 85.4 10.9 63 83-145 8-78 (158)
5 PF13750 Big_3_3: Bacterial Ig 97.5 0.0011 2.4E-08 67.5 11.6 126 301-432 3-142 (158)
6 PF13754 Big_3_4: Bacterial Ig 96.8 0.0018 3.9E-08 55.1 4.3 37 82-118 16-54 (54)
7 PF13205 Big_5: Bacterial Ig-l 96.7 0.015 3.2E-07 53.3 9.8 85 344-433 1-97 (107)
8 PF13205 Big_5: Bacterial Ig-l 96.1 0.018 3.9E-07 52.7 7.1 95 227-335 1-96 (107)
9 PF07495 Y_Y_Y: Y_Y_Y domain; 90.4 0.41 8.9E-06 40.8 4.3 42 62-103 7-52 (66)
10 KOG1829 Uncharacterized conser 89.9 0.37 8E-06 58.5 4.8 76 996-1077 6-83 (580)
11 PF13752 DUF4165: Domain of un 85.8 0.94 2E-05 45.6 4.1 38 81-118 85-124 (124)
12 PF13754 Big_3_4: Bacterial Ig 76.7 4.1 8.9E-05 34.9 4.3 45 178-231 10-54 (54)
13 PF12245 Big_3_2: Bacterial Ig 74.8 3.6 7.8E-05 36.0 3.5 35 85-119 18-54 (60)
14 PF02494 HYR: HYR domain; Int 62.0 14 0.0003 33.4 4.6 33 113-145 1-34 (81)
15 PF11920 DUF3438: Protein of u 48.0 82 0.0018 36.1 8.7 82 223-349 42-123 (288)
16 PF15194 TMEM191C: TMEM191C fa 43.7 6.6 0.00014 38.9 -0.5 53 809-876 34-86 (121)
17 KOG1056 Glutamate-gated metabo 43.3 27 0.00058 45.0 4.5 135 821-971 647-806 (878)
18 TIGR00864 PCC polycystin catio 43.2 1.4E+03 0.031 34.1 29.3 316 44-406 1622-1978(2740)
19 COG1138 CcmF Cytochrome c biog 38.8 32 0.00069 43.1 4.0 55 697-771 178-253 (648)
20 PF12245 Big_3_2: Bacterial Ig 37.9 32 0.0007 30.2 2.9 24 206-232 31-54 (60)
21 KOG0196 Tyrosine kinase, EPH ( 36.8 1.9E+02 0.0042 37.7 10.1 136 62-212 364-523 (996)
22 PF09134 Invasin_D3: Invasin, 35.3 67 0.0014 31.7 4.8 22 393-415 57-79 (99)
23 PF01102 Glycophorin_A: Glycop 34.1 34 0.00075 34.6 2.8 24 628-652 71-94 (122)
24 TIGR02059 swm_rep_I cyanobacte 32.9 91 0.002 31.0 5.3 34 112-145 9-42 (101)
25 PF13290 CHB_HEX_C_1: Chitobia 27.5 2.3E+02 0.005 25.7 6.6 57 44-109 8-66 (67)
26 TIGR02059 swm_rep_I cyanobacte 27.3 2.2E+02 0.0047 28.5 6.8 72 344-416 11-95 (101)
27 smart00634 BID_1 Bacterial Ig- 26.9 4.2E+02 0.0091 24.6 8.5 53 43-97 17-69 (92)
28 TIGR00771 DcuC c4-dicarboxylat 25.9 1E+02 0.0022 36.1 5.2 32 705-736 216-247 (388)
29 TIGR03749 conj_TIGR03749 integ 25.2 4.3E+02 0.0094 30.2 9.5 92 220-349 12-115 (257)
30 cd00146 PKD polycystic kidney 25.0 3.1E+02 0.0068 24.1 7.0 55 44-103 15-70 (81)
31 PF12911 OppC_N: N-terminal TM 24.9 70 0.0015 27.0 2.8 30 617-648 8-37 (56)
32 PF06363 Picorna_P3A: Picornav 24.2 55 0.0012 32.2 2.2 42 613-654 56-98 (100)
33 smart00089 PKD Repeats in poly 22.0 5.4E+02 0.012 22.5 7.9 27 77-103 42-68 (79)
34 PF15418 DUF4625: Domain of un 21.8 4.3E+02 0.0093 27.1 8.0 92 113-216 10-125 (132)
35 PF13829 DUF4191: Domain of un 21.6 70 0.0015 35.5 2.6 51 727-788 79-129 (224)
36 PF11694 DUF3290: Protein of u 21.5 1.5E+02 0.0033 30.9 4.9 31 624-654 16-46 (149)
37 PF10031 DUF2273: Small integr 21.1 54 0.0012 28.6 1.4 35 693-727 16-50 (51)
38 PRK09400 secE preprotein trans 20.4 90 0.0019 28.3 2.6 36 927-964 10-45 (61)
No 1
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=99.57 E-value=1.2e-13 Score=149.19 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=182.4
Q ss_pred eeccC-CCCcEEEEEEEeCCCC-CCccceeeEeecCCCceeecc--CcccCccccEEEEEEecccccCCCCccccccccc
Q 001432 83 SYTGL-HDGNHTFEVCSYGSQG-VGCSSHNWIVDTVPPTAYITA--SSSFTNAKNVSVNISFTEPCCSRGGFGCSSVNAC 158 (1079)
Q Consensus 83 s~s~L-~DG~HTF~V~A~~~~G-~~~AsysWTVDTtpPTa~Its--~~~~Tna~nVTV~ItFSE~~tg~GGF~cssinac 158 (1079)
-...| .||.|++.|.+.|.+| ....+.+.+||++||++.|.. +....++..++..++|+..+++ +.-.+
T Consensus 4 ~~~~l~~d~~~~v~vt~tD~aGN~~~~t~~~~vDt~~P~v~i~~~~~~~~~~~~~~~~~~t~s~tvs~---~~~g~---- 76 (317)
T PF13753_consen 4 VVQSLSADGTYTVSVTVTDAAGNTSTATQSITVDTTAPTVTITSIADDDIINGDEATNTVTFSGTVSG---AEPGS---- 76 (317)
T ss_pred HhhhccCCCcEEEEEEEEeCCCCeeeeeEEEEEecCCCceeeecccCCCccccceeeeeeEEEEEecC---CCCCC----
Confidence 35688 6999999999999999 555789999999999999983 3334455555555566655542 11111
Q ss_pred ceEEeccccccccceEEeecCceEEEEEeecccceeeEEEEEecccccccccCCccccccCceEEEEEeccc---eeeee
Q 001432 159 NLLVYGAGQVIPSSLITVQRSLEYSLLVSLSSNVQYGRVILVMDKSFCTDTAGNIFSRAENSSFYVHFDRRS---LFVDL 235 (1079)
Q Consensus 159 dl~V~G~G~V~pSsl~vv~pg~~YSl~VtlS~~~~~GrVil~ma~n~ctDaAGN~ftr~~~Ss~~i~fDrrs---ptV~L 235 (1079)
.+.|+..|.. -++..-..| +|++.+..+.....|...+.+. .++|+|||..+. ++..+.+|..+ |.+.+
T Consensus 77 ~v~v~~~g~~--~t~~~~~~G-~ws~t~~~~~~l~~g~~ti~v~--~~tD~aGN~~t~---~s~~~~vDt~~~~~p~vti 148 (317)
T PF13753_consen 77 TVTVTINGTT--GTLTADADG-NWSVTVTPSDDLPDGDYTITVT--TVTDAAGNTSTA---ASQTFTVDTTAPTAPTVTI 148 (317)
T ss_pred EEEEEECCEE--EEEEEecCC-cEEEeeccccccccCcceeEEE--EEEccCCccccc---cccccccccccccccccce
Confidence 2445544432 234444455 5999997765677888787766 789999997654 46677889884 66655
Q ss_pred eeccccceeeccCcceEEEeccCCcceEEEEEeccccccchHHHHhhc--ccccceeeeccCcCCCcceEEEEEee--c-
Q 001432 236 RSHVPEKLLQLNNKTRTVQATNDDEKLKVYLYFSEAVLNSSAEILNSL--NSSQGTLVPINGKNRGNHRFGFMVAN--I- 310 (1079)
Q Consensus 236 ~t~vPe~~l~I~g~~rTV~aTN~~~dl~vyLtFSEpVtnssaeil~~L--~vs~G~Ltp~~~~~~GNrrf~f~l~n--~- 310 (1079)
.. +++ . ...| .++..+.++||+.+.+....+.-.+ ++..+ ..... ++..|++++.. .
T Consensus 149 ~~-~~~-------~----~~~~-~~~~~~t~t~sg~v~~~~~~d~v~vt~~G~~~-~~~~~----~~g~~t~~~~~~~~~ 210 (317)
T PF13753_consen 149 TG-ISD-------D----NIIN-GAESTVTVTFSGTVTGFDAGDTVTVTINGTTY-TTTVG----ADGTWTVTVTPSDLA 210 (317)
T ss_pred ec-ccC-------C----ceee-ccceeecccccccceeeeeceeEEEeeccccc-ceeec----CCCcccccccccccc
Confidence 42 111 0 1122 2345677899999988776432222 23333 12222 23377777764 2
Q ss_pred -ccceEEEEEeecccccccCCCCCcCCCceeeeecCCCCeEEEecC--CCCcccccceeEEEEeeecccceeecceEEec
Q 001432 311 -SSIAIITVSLKSNSIISRYGTPVLPIDPVTFLYDSQRPAVRLSTT--SSTRTRQDSIPILIKFLKPVFGFNSSLISISG 387 (1079)
Q Consensus 311 -S~~gvVTVsl~a~si~draGn~vs~sap~tflyD~trPtV~LSTs--s~~~T~~~~i~Vti~FsEpV~GF~sSdItVsn 387 (1079)
..++.++|. .. +.|.+||.. ..+..++.+|.+.|+|++..- .......+.-. .++|++.|.+|+..+...
T Consensus 211 ~~~d~~~~v~--v~-~tD~AGN~~-~t~s~~~tvDt~~ptiti~~~~~D~~in~~e~~~-~~t~sg~v~~~~~g~~v~-- 283 (317)
T PF13753_consen 211 GLADGTYTVT--VT-VTDAAGNTA-GTASQTFTVDTTAPTITIDPITADNIINAAEANT-TVTISGTVTDAEAGDTVT-- 283 (317)
T ss_pred cccCceEEEE--EE-eeecccCcc-cccceeEEEecccceeEeeeccCCceeeeecccc-cEEEecccCCCCCCCEEE--
Confidence 234555555 33 789999999 344568899999999998762 11122222223 789999999999998543
Q ss_pred ceecceeeecccEEEEEEEECCCeEEEEec
Q 001432 388 GHLQSFQEIRRSIYILEIQANADTVSVNVP 417 (1079)
Q Consensus 388 GtL~~F~evS~s~Yt~~Vta~~g~VsV~Vp 417 (1079)
..+.+..|+.+|.. +|..+++|+
T Consensus 284 ------v~v~g~~~~t~v~~-~g~~s~~v~ 306 (317)
T PF13753_consen 284 ------VTVNGNTYTTTVDA-DGTWSVTVT 306 (317)
T ss_pred ------EEECCEEEEEEEeC-CCeEEEEcC
Confidence 12345567765544 345777764
No 2
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=99.24 E-value=6.9e-11 Score=127.98 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=143.2
Q ss_pred eecCceEEEEEeecccceeeEEEEEecccccccccCCccccccCceEEEEEeccceeeeeeeccccceeeccCcceEEEe
Q 001432 176 VQRSLEYSLLVSLSSNVQYGRVILVMDKSFCTDTAGNIFSRAENSSFYVHFDRRSLFVDLRSHVPEKLLQLNNKTRTVQA 255 (1079)
Q Consensus 176 v~pg~~YSl~VtlS~~~~~GrVil~ma~n~ctDaAGN~ftr~~~Ss~~i~fDrrsptV~L~t~vPe~~l~I~g~~rTV~a 255 (1079)
+.++..|++.|+. +|.|||... .+..+..|..+|.|.+..-..+.. +++.. +
T Consensus 8 l~~d~~~~v~vt~------------------tD~aGN~~~----~t~~~~vDt~~P~v~i~~~~~~~~--~~~~~----~ 59 (317)
T PF13753_consen 8 LSADGTYTVSVTV------------------TDAAGNTST----ATQSITVDTTAPTVTITSIADDDI--INGDE----A 59 (317)
T ss_pred ccCCCcEEEEEEE------------------EeCCCCeee----eeEEEEEecCCCceeeecccCCCc--cccce----e
Confidence 4456677777763 999999664 346688999999888772111111 11111 1
Q ss_pred ccCCcceEEEEEeccccccchHHHHhhcccccceeeeccCcCCCcceEEEEEeec--ccceEEEEEeecccccccCCCCC
Q 001432 256 TNDDEKLKVYLYFSEAVLNSSAEILNSLNSSQGTLVPINGKNRGNHRFGFMVANI--SSIAIITVSLKSNSIISRYGTPV 333 (1079)
Q Consensus 256 TN~~~dl~vyLtFSEpVtnssaeil~~L~vs~G~Ltp~~~~~~GNrrf~f~l~n~--S~~gvVTVsl~a~si~draGn~v 333 (1079)
+ ....+.++.++.-.+++- .-..++..+.++ ....| .|.+.+.+. -..|..+|++. .+.|++||..
T Consensus 60 ~---~~~t~s~tvs~~~~g~~v--~v~~~g~~~t~~---~~~~G--~ws~t~~~~~~l~~g~~ti~v~--~~tD~aGN~~ 127 (317)
T PF13753_consen 60 T---NTVTFSGTVSGAEPGSTV--TVTINGTTGTLT---ADADG--NWSVTVTPSDDLPDGDYTITVT--TVTDAAGNTS 127 (317)
T ss_pred e---eeeEEEEEecCCCCCCEE--EEEECCEEEEEE---EecCC--cEEEeeccccccccCcceeEEE--EEEccCCccc
Confidence 1 122333444433223321 112233334444 22334 488888752 23456677666 6789999998
Q ss_pred cCCCceeeeecCC---CCeEEEecCCC-CcccccceeEEEEeeecccceeecc-eEEe-cceecceeeecccEEEEEEEE
Q 001432 334 LPIDPVTFLYDSQ---RPAVRLSTTSS-TRTRQDSIPILIKFLKPVFGFNSSL-ISIS-GGHLQSFQEIRRSIYILEIQA 407 (1079)
Q Consensus 334 s~sap~tflyD~t---rPtV~LSTss~-~~T~~~~i~Vti~FsEpV~GF~sSd-ItVs-nGtL~~F~evS~s~Yt~~Vta 407 (1079)
.+ ...+|.+|++ +|+|.+...+. .........++++|++.|.+|+..| +.++ ||....+.......|++++.+
T Consensus 128 t~-~s~~~~vDt~~~~~p~vti~~~~~~~~~~~~~~~~t~t~sg~v~~~~~~d~v~vt~~G~~~~~~~~~~g~~t~~~~~ 206 (317)
T PF13753_consen 128 TA-ASQTFTVDTTAPTAPTVTITGISDDNIINGAESTVTVTFSGTVTGFDAGDTVTVTINGTTYTTTVGADGTWTVTVTP 206 (317)
T ss_pred cc-cccccccccccccccccceecccCCceeeccceeecccccccceeeeeceeEEEeecccccceeecCCCcccccccc
Confidence 77 6778899988 69999985333 3444445788899999999999977 6665 788776655566799999987
Q ss_pred C------CCeEEEEecCCcccccCCCCC-CCCcceeEEEecc-cceee
Q 001432 408 N------ADTVSVNVPENVTGDVAGNKN-LPSNVLQVKHYSV-PTISS 447 (1079)
Q Consensus 408 ~------~g~VsV~Vpan~a~DaAGN~N-lASn~LqV~hySt-P~iS~ 447 (1079)
. ++.++|. +. ++|.|||.. .++. ++..|++ |.|++
T Consensus 207 ~~~~~~~d~~~~v~--v~-~tD~AGN~~~t~s~--~~tvDt~~ptiti 249 (317)
T PF13753_consen 207 SDLAGLADGTYTVT--VT-VTDAAGNTAGTASQ--TFTVDTTAPTITI 249 (317)
T ss_pred cccccccCceEEEE--EE-eeecccCcccccce--eEEEecccceeEe
Confidence 2 2445555 34 899999999 6765 4455544 55543
No 3
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=98.53 E-value=1.4e-07 Score=107.33 Aligned_cols=361 Identities=19% Similarity=0.284 Sum_probs=207.0
Q ss_pred hhhHhhhhceeeeeeeccccccCcceeeeeeccceeeeeccccCCCCCCCCC---------cccccCCCCCCCCcccccc
Q 001432 492 ARNLFRTACHIQVFALSRWLVDTLPVEYYEFARGIQWSIPYFNLPWETGQSH---------PVMVGSSSPDGPHSYISKF 562 (1079)
Q Consensus 492 srNl~~~a~HiQvfaLs~wlsv~lpieY~E~~~gl~W~IP~~~lPWe~~~~~---------~~~~~s~~~~~~~s~~~~~ 562 (1079)
+-|.+.+..|+|..+++.=|+++.|==|+.++..++|+.=-++.+.=.+..+ |-..++++...+.. .+|
T Consensus 33 ~~~~~~l~~y~Q~i~~~g~Lsv~~P~f~~~~~~nfaWS~gli~~~~~q~~~~~~~~~tgg~~~~~~~~~~~~s~~--~~R 110 (438)
T PF06011_consen 33 SPSVLDLFQYFQFIAFTGMLSVNYPGFYQPWTSNFAWSAGLIRSSFMQNSIDWYRRATGGSPDNIYSSSSTGSVN--VQR 110 (438)
T ss_pred CCcHHHHHHHHHHHHHhhCcCCCCChHHHHHHHHHhHHHhcccccccccCccccccCCCCCcCceecCCCceeee--eee
Confidence 6679999999999999999999999999999999999863333222222222 11222222121111 111
Q ss_pred cccccccc------cCCCCCCCCCCCcccCCCCChhhhhhhhhcCCCCcccccccCCCccchhhhcccchhhhhhhhHHH
Q 001432 563 NHLAIFQS------EQPVAGNSNTDAAVYGSPLTPMEYESFFESQNIKPEADYLDSNHMNGWREFDRSMFWLAVIGGSLI 636 (1079)
Q Consensus 563 ~~~~~~~~------~~~~~~~~~~~~~~~G~pl~~~eY~~~F~~~~~k~ea~~~~~~~~~gW~df~rnmFWl~Vigg~l~ 636 (1079)
+ ...... ..+..+..+.....+|++ .|=+.-+..+ =.+|.-++.|+.++++..+
T Consensus 111 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-------~~a~~~gi~~------------~~~f~t~~~~~lii~~~~~ 170 (438)
T PF06011_consen 111 S-LSPSATSPSSSDGSPVNPGSPLPGIVSGIE-------RYAQSLGIPT------------TNAFWTGFIWFLIIIAAVV 170 (438)
T ss_pred c-hhhhhhhhhhcccCcccccccccccccCHH-------HHHHHcCCcc------------HhHHHHHHHHHHHHHHHHH
Confidence 1 110000 011111222333333332 1111111111 1367778888888888877
Q ss_pred HHHHHHHHHhhhhccccc--cccc-------ceeEEechhHHHHHHhhccccccccceEEecCccceeeeehhHHHHHHH
Q 001432 637 LLHILLVLIVKFRKKNSE--KQRG-------YGAVTFPRFEIFLIILALPCICKDSAALVEGGARSGLILGILLLAVVSF 707 (1079)
Q Consensus 637 llH~lll~~lk~R~~~~~--~~~~-------~Gal~~PRfElfllilalP~i~qasa~li~Ggtt~gi~vGilLl~v~~~ 707 (1079)
++=+++.+++++..|... +... +..+..-..=-.+++...|...-+.=-+..+++.+-++.+++++++...
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~lr~~li~~~pi~~ls~~qf~~~~s~~~~~lA~i~~~~~~~ 250 (438)
T PF06011_consen 171 IVVALLKLILELLARRGSMPKPDRLAEFRRHWWSFLKGNLLRLLLIFFFPITILSFFQFTLADSWASVVLAVILFALWIV 250 (438)
T ss_pred HHHHHHHHHHHHHHHhcccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 776666666666432211 1111 1111111111112344455444343344556654444444444333222
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhhcccccccceeeEEEEeCCCCccccccCCCCCccchhhcccccccCCCCceEEee
Q 001432 708 LLLSLLLFLSVGITLGKLLQYKEVHQEGQRFHWYQEIVRVTLGPGKRGQWTWKNQPDSSYLTILGPLFEDLRGPPKYMLS 787 (1079)
Q Consensus 708 ~llal~lfL~vgi~~G~l~qYKEv~~~~~~~~wy~~l~r~~lG~g~~GqW~~k~~~~s~~l~r~G~lFEd~rGPP~~~l~ 787 (1079)
++ .+.+..+ +..--++|+.|+.. ..+-..+..++-|||+|+++.|-.
T Consensus 251 ~~----~~~~~~i-~~~~~~~~~~~~~~----------------------~~~ly~d~~~l~~~G~LY~~Y~~~------ 297 (438)
T PF06011_consen 251 LL----GYFVFRI-IRIARKSKRLHNNP----------------------RSKLYDDPKTLLRWGFLYNQYRPS------ 297 (438)
T ss_pred HH----HHHHHhh-eEeeecchhccCCc----------------------hhhccCChhHHHHheeeHhhcCcc------
Confidence 11 1111111 11111223333321 122344578999999999887521
Q ss_pred cccCCCCccccccccccccccccccchhhHHHhhhhhhHHHHHHHHhHhhhceeeeeecCCCCCCCceeehhhHHHHHHH
Q 001432 788 QISGGNPHKERDRIIASDDETEDAEAPFIQKLFGILRIYYTLLESVKRVSLGILAGVYTDDWSSKTPTVVLLCITSFQLF 867 (1079)
Q Consensus 788 ~i~g~~~~~~~~~~i~Sddene~~eap~~~kl~G~~R~~y~~ld~~rRv~LGi~aga~~~~~ss~~~~~~~L~It~~Ql~ 867 (1079)
|-||.+.+++.....|++-|.-.. +.+.|++.++++-...++
T Consensus 298 ------------------------------------~~~f~~~~~~~~~~~~~~ig~~q~--~g~~Qv~~llv~e~~~l~ 339 (438)
T PF06011_consen 298 ------------------------------------RWWFFIVWLLYKFLRGIFIGFLQG--SGIAQVIALLVIEVIYLI 339 (438)
T ss_pred ------------------------------------hhhhHHHHHHHHHHHHHheeeecc--CcHHHHHHHHHHHHHHHH
Confidence 346788888888888887777643 458999999999999999
Q ss_pred HhhhhccccccCceEEEEEeeeeehhhhhhheeecccc-CCCCCccchhhHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 001432 868 FMVLKKPFIKKKIQLVEIISISCQVGLFTLCLVFIEKE-FSSGGETKVGISMLAL----FLVGYFAQMINEWYALYRQVK 942 (1079)
Q Consensus 868 flvl~KPfikr~VqlVE~isl~cevgvF~~~~~ll~~~-~~~~~~~~~gi~Ml~l----~~~~f~aq~~NEWyAl~~q~~ 942 (1079)
.+...|||-.|+...++++...+-+..-.+|+.+++.- .+......+|++++++ +++.|+..+++-+++++|.-.
T Consensus 340 ~~~~~~Py~~~~~n~~~~~~~~~~~i~~~l~i~f~~~~~~~~~~~~~vg~vi~~i~~~v~~~~~i~~~~~~~~~~~~~~~ 419 (438)
T PF06011_consen 340 LLFILRPYMDKRTNVLNIILSVVRLITLFLLIAFLPSLNLSEIVRTVVGYVIIIINAIVLLILFILIIVSTIISLFRKRP 419 (438)
T ss_pred HHHHhChhccccccHHHHHHHHHHHHHHHHHHHHhcccCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999889988778777777777776443 3666677888888764 445566667778888877755
Q ss_pred hcC
Q 001432 943 QLD 945 (1079)
Q Consensus 943 ~Ls 945 (1079)
...
T Consensus 420 ~~~ 422 (438)
T PF06011_consen 420 DSR 422 (438)
T ss_pred CcC
Confidence 444
No 4
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=98.33 E-value=3.4e-06 Score=85.37 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=46.9
Q ss_pred eeccCCCCcEEEEE-EEeCCCC-CCcc--ceeeEeecCCCceeeccCcccCcc----ccEEEEEEeccccc
Q 001432 83 SYTGLHDGNHTFEV-CSYGSQG-VGCS--SHNWIVDTVPPTAYITASSSFTNA----KNVSVNISFTEPCC 145 (1079)
Q Consensus 83 s~s~L~DG~HTF~V-~A~~~~G-~~~A--sysWTVDTtpPTa~Its~~~~Tna----~nVTV~ItFSE~~t 145 (1079)
.++.|.||.|++.+ .|.|..| .+.. ..+++||+|||+++|..+...+++ ..+++.|+..+...
T Consensus 8 d~~~l~dG~Y~l~~~~a~D~agN~~~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~ 78 (158)
T PF13750_consen 8 DLSTLPDGSYTLTVVTATDAAGNTSTSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSD 78 (158)
T ss_pred EeCcCCCccEEEEEEEEEecCCCEEEEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCC
Confidence 46789999999999 8999999 3333 346999999999999444444433 34677777777665
No 5
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=97.47 E-value=0.0011 Score=67.47 Aligned_cols=126 Identities=20% Similarity=0.292 Sum_probs=86.8
Q ss_pred ceEEEEEeecccceEEEEEeecccccccCCCCCcCCCceeeeecCCCCeEEEecC---CCCcccccceeEEEEeeecccc
Q 001432 301 HRFGFMVANISSIAIITVSLKSNSIISRYGTPVLPIDPVTFLYDSQRPAVRLSTT---SSTRTRQDSIPILIKFLKPVFG 377 (1079)
Q Consensus 301 rrf~f~l~n~S~~gvVTVsl~a~si~draGn~vs~sap~tflyD~trPtV~LSTs---s~~~T~~~~i~Vti~FsEpV~G 377 (1079)
-.|+|.+++... |.-++.+. .+.|.+||........++..|+|+|+|.|... ....+-....++.|.-+-...+
T Consensus 3 ~~~~fd~~~l~d-G~Y~l~~~--~a~D~agN~~~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~~ 79 (158)
T PF13750_consen 3 YTYTFDLSTLPD-GSYTLTVV--TATDAAGNTSTSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSDD 79 (158)
T ss_pred EEEEEEeCcCCC-ccEEEEEE--EEEecCCCEEEEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCCC
Confidence 457777776654 66777652 13589999887777778999999999999322 2223334557778888888877
Q ss_pred eeecceEEecceecc-----eeeecccEEEEE---EEEC---CCeEEEEecCCcccccCCCCCCCC
Q 001432 378 FNSSLISISGGHLQS-----FQEIRRSIYILE---IQAN---ADTVSVNVPENVTGDVAGNKNLPS 432 (1079)
Q Consensus 378 F~sSdItVsnGtL~~-----F~evS~s~Yt~~---Vta~---~g~VsV~Vpan~a~DaAGN~NlAS 432 (1079)
=....+.+.||.... +.+.+...|.++ +.|. ++.=+++| .|+|.|||-+.-+
T Consensus 80 ~~i~sv~l~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV---~a~D~aGN~~~~s 142 (158)
T PF13750_consen 80 SKITSVSLTGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTV---SATDKAGNQSTKS 142 (158)
T ss_pred ceEEEEEEECCcccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEE---EEEecCCCEEEEE
Confidence 788889999987544 345567788887 3443 34444444 4789999976543
No 6
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=96.76 E-value=0.0018 Score=55.12 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=31.0
Q ss_pred eeeccCCCCcEEEEEEEeCCCC--CCccceeeEeecCCC
Q 001432 82 VSYTGLHDGNHTFEVCSYGSQG--VGCSSHNWIVDTVPP 118 (1079)
Q Consensus 82 vs~s~L~DG~HTF~V~A~~~~G--~~~AsysWTVDTtpP 118 (1079)
.++..+.||.|+++|.|.|.+| ..+.+.+.+|||+||
T Consensus 16 ~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~tiDttaP 54 (54)
T PF13754_consen 16 FTVPALADGTYTITVTATDAAGNTSTSSSVTFTIDTTAP 54 (54)
T ss_pred EeCCCCCCccEEEEEEEEeCCCCCCCccceeEEEeCCCC
Confidence 3444557999999999999999 555578899999999
No 7
>PF13205 Big_5: Bacterial Ig-like domain
Probab=96.65 E-value=0.015 Score=53.31 Aligned_cols=85 Identities=27% Similarity=0.338 Sum_probs=55.5
Q ss_pred cCCCCeEEEecCCCCccc--ccceeEEEEeeecccceeec-ceEE--ecceecceee--ecccEEEEEEEECC----Ce-
Q 001432 344 DSQRPAVRLSTTSSTRTR--QDSIPILIKFLKPVFGFNSS-LISI--SGGHLQSFQE--IRRSIYILEIQANA----DT- 411 (1079)
Q Consensus 344 D~trPtV~LSTss~~~T~--~~~i~Vti~FsEpV~GF~sS-dItV--snGtL~~F~e--vS~s~Yt~~Vta~~----g~- 411 (1079)
|+++|.|.-.+.. .... ...-+|.|+|+|||--=+.. .+.+ .++....+.. .++ -++.++|.. |.
T Consensus 1 D~~~p~v~s~~P~-~~~~~V~~~~~i~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~~~~~--~~~~i~p~~~L~~~t~ 77 (107)
T PF13205_consen 1 DTTPPTVVSTSPA-DGATNVPPDSPIVITFSEPVDPASVSSAITITDSNGSGVPVSFSSWDG--NTLTITPSQPLKPGTT 77 (107)
T ss_pred CCCCCEEEEEeCC-CCCCccCCCCeEEEEECCceecCccceEEEEEecCCCcEEEEEEEccC--CEEEEEECCcCCCCCE
Confidence 8899999965533 3332 22448899999999433332 2334 4566655532 344 555565555 33
Q ss_pred EEEEecCCcccccCCCCCCCCc
Q 001432 412 VSVNVPENVTGDVAGNKNLPSN 433 (1079)
Q Consensus 412 VsV~Vpan~a~DaAGN~NlASn 433 (1079)
.+|.|+.| ..|.+||. ++++
T Consensus 78 Y~v~i~~~-i~d~~Gn~-l~~~ 97 (107)
T PF13205_consen 78 YTVTIDSG-IKDLAGNP-LAAP 97 (107)
T ss_pred EEEEECCC-CCCCCCCc-cCCC
Confidence 99999999 89999987 5544
No 8
>PF13205 Big_5: Bacterial Ig-like domain
Probab=96.11 E-value=0.018 Score=52.74 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=61.7
Q ss_pred eccceeeeeeeccccceeeccCcceEEEeccCCcceEEEEEeccccccchHHHHhhcccccceeeeccCcCCCcceEEEE
Q 001432 227 DRRSLFVDLRSHVPEKLLQLNNKTRTVQATNDDEKLKVYLYFSEAVLNSSAEILNSLNSSQGTLVPINGKNRGNHRFGFM 306 (1079)
Q Consensus 227 DrrsptV~L~t~vPe~~l~I~g~~rTV~aTN~~~dl~vyLtFSEpVtnssaeil~~L~vs~G~Ltp~~~~~~GNrrf~f~ 306 (1079)
|.++|.|.-+.+.+.. +|-.-+-.|.++|+|||.-.+...-..+..+.+...+.......+++..+.
T Consensus 1 D~~~p~v~s~~P~~~~-------------~~V~~~~~i~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~ 67 (107)
T PF13205_consen 1 DTTPPTVVSTSPADGA-------------TNVPPDSPIVITFSEPVDPASVSSAITITDSNGSGVPVSFSSWDGNTLTIT 67 (107)
T ss_pred CCCCCEEEEEeCCCCC-------------CccCCCCeEEEEECCceecCccceEEEEEecCCCcEEEEEEEccCCEEEEE
Confidence 7788888877665542 222234588999999996555432222322344444444442233788888
Q ss_pred Ee-ecccceEEEEEeecccccccCCCCCcC
Q 001432 307 VA-NISSIAIITVSLKSNSIISRYGTPVLP 335 (1079)
Q Consensus 307 l~-n~S~~gvVTVsl~a~si~draGn~vs~ 335 (1079)
.. +.......+|+++.+ +.|.+||+...
T Consensus 68 p~~~L~~~t~Y~v~i~~~-i~d~~Gn~l~~ 96 (107)
T PF13205_consen 68 PSQPLKPGTTYTVTIDSG-IKDLAGNPLAA 96 (107)
T ss_pred ECCcCCCCCEEEEEECCC-CCCCCCCccCC
Confidence 77 566778999999999 89999987543
No 9
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=90.45 E-value=0.41 Score=40.82 Aligned_cols=42 Identities=29% Similarity=0.401 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCC--CcCCCCC--ceeeccCCCCcEEEEEEEeCCCC
Q 001432 62 DCRISCKLDDGI--ASDCGTW--EVSYTGLHDGNHTFEVCSYGSQG 103 (1079)
Q Consensus 62 ~csf~CkLDg~~--~~dC~s~--~vs~s~L~DG~HTF~V~A~~~~G 103 (1079)
+..|+.+|+|.. +..-... .++|++|..|+++|+|+|.+..|
T Consensus 7 ~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~ 52 (66)
T PF07495_consen 7 NIRYRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNG 52 (66)
T ss_dssp TEEEEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS
T ss_pred ceEEEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCC
Confidence 688888887743 4444443 68999999999999999999988
No 10
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=89.89 E-value=0.37 Score=58.46 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=61.3
Q ss_pred cccccCCCCCCCCCCchHHHHHHHHhhccccccCCCCCCCCCCccccccccccccccCCCC--CCcccccccchhhhhHH
Q 001432 996 DRIRSSGSRSSGSTDKPWLKQLREMAKSSFSKERSGTINDPSTSQTKWNGFWSAKRSRSSS--SSSDFKSKSKGLYKDLE 1073 (1079)
Q Consensus 996 ~~~~~~g~~~~~~~~k~~l~~lre~akasfs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~k~ly~dle 1073 (1079)
++..+.+.++.|..|++|.++|||+++.||+.+..++..++..+.. +|.++.++.+. +.++|+...+.+|++
T Consensus 6 ~~~~s~~~~~~g~~~~~~~~~~~~~~~ss~~t~~~~s~~~~~~~~~----~~~~~~~~~s~~~~~~~~s~~~~~~~~~-- 79 (580)
T KOG1829|consen 6 GSFVSAAYRRSGPSDSPLGHVLRESTLSSFTTDSVGSAVPHRSSEK----IWSTSISSLSVLESRADYSHRVSPLTSP-- 79 (580)
T ss_pred cchhhccccccCCCCchHHHHHHHHhhcccccccccCCCCCCcccc----cCcccccccCccccccchhhcccccccc--
Confidence 4455667888899999999999999999999999987554444443 78888887777 888899999999998
Q ss_pred HHHh
Q 001432 1074 AIFA 1077 (1079)
Q Consensus 1074 ~if~ 1077 (1079)
++++
T Consensus 80 as~~ 83 (580)
T KOG1829|consen 80 ASTS 83 (580)
T ss_pred hhcC
Confidence 6654
No 11
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=85.78 E-value=0.94 Score=45.59 Aligned_cols=38 Identities=34% Similarity=0.419 Sum_probs=34.3
Q ss_pred ceeeccCCCCcEEEEEEEeCCCC--CCccceeeEeecCCC
Q 001432 81 EVSYTGLHDGNHTFEVCSYGSQG--VGCSSHNWIVDTVPP 118 (1079)
Q Consensus 81 ~vs~s~L~DG~HTF~V~A~~~~G--~~~AsysWTVDTtpP 118 (1079)
..++-.|.||..++....-+.+| -...+|.|+|||+||
T Consensus 85 ~ltlp~l~dG~ytvk~eiL~s~g~vV~t~s~~~~IDtt~P 124 (124)
T PF13752_consen 85 ELTLPALGDGTYTVKSEILDSQGTVVQTYSYPFTIDTTGP 124 (124)
T ss_pred EEEeccCCCCcEEEEEEeeccCCCEEEeeeEeEEEeccCC
Confidence 36667889999999999999999 788899999999999
No 12
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=76.71 E-value=4.1 Score=34.92 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=29.2
Q ss_pred cCceEEEEEeecccceeeEEEEEecccccccccCCccccccCceEEEEEeccce
Q 001432 178 RSLEYSLLVSLSSNVQYGRVILVMDKSFCTDTAGNIFSRAENSSFYVHFDRRSL 231 (1079)
Q Consensus 178 pg~~YSl~VtlS~~~~~GrVil~ma~n~ctDaAGN~ftr~~~Ss~~i~fDrrsp 231 (1079)
.+-.|++.+. .. ..|.-.+.+- ++|+|||.... +...+..|..+|
T Consensus 10 ~~G~Ws~t~~--~~-~dG~y~itv~---a~D~AGN~s~~---~~~~~tiDttaP 54 (54)
T PF13754_consen 10 SDGNWSFTVP--AL-ADGTYTITVT---ATDAAGNTSTS---SSVTFTIDTTAP 54 (54)
T ss_pred CCCcEEEeCC--CC-CCccEEEEEE---EEeCCCCCCCc---cceeEEEeCCCC
Confidence 3455666543 22 5777666665 69999997654 444577787776
No 13
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=74.78 E-value=3.6 Score=36.03 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=28.8
Q ss_pred ccCCCCcEEEEEEEeCCCC--CCccceeeEeecCCCc
Q 001432 85 TGLHDGNHTFEVCSYGSQG--VGCSSHNWIVDTVPPT 119 (1079)
Q Consensus 85 s~L~DG~HTF~V~A~~~~G--~~~AsysWTVDTtpPT 119 (1079)
.+..||.|++++.+.|.+| .......-.+|++.|.
T Consensus 18 ~~~~dg~yt~~v~a~D~AGN~~~~~~~~~i~d~~~p~ 54 (60)
T PF12245_consen 18 ENDADGEYTLTVTATDKAGNTSSSTTQIVIVDNTAPA 54 (60)
T ss_pred CccCCccEEEEEEEEECCCCEEEeeeEEEEEcCCCCC
Confidence 4556999999999999999 5566677888888775
No 14
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=61.97 E-value=14 Score=33.35 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=19.4
Q ss_pred eecCCCceeeccCcccC-ccccEEEEEEeccccc
Q 001432 113 VDTVPPTAYITASSSFT-NAKNVSVNISFTEPCC 145 (1079)
Q Consensus 113 VDTtpPTa~Its~~~~T-na~nVTV~ItFSE~~t 145 (1079)
||++||++.--.....+ ....-+..++|.||..
T Consensus 1 vD~~pP~i~CP~~i~~~~~~~~~~~~v~w~~p~~ 34 (81)
T PF02494_consen 1 VDTTPPVITCPDDITVTVEPGQSTASVSWTEPTA 34 (81)
T ss_pred CCCCCCEEECCCCcEEEecCCCceEEEEecCCEE
Confidence 79999999443332222 1122255778888864
No 15
>PF11920 DUF3438: Protein of unknown function (DUF3438); InterPro: IPR021844 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=47.99 E-value=82 Score=36.14 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=54.8
Q ss_pred EEEEeccceeeeeeeccccceeeccCcceEEEeccCCcceEEEEEeccccccchHHHHhhcccccceeeeccCcCCCcce
Q 001432 223 YVHFDRRSLFVDLRSHVPEKLLQLNNKTRTVQATNDDEKLKVYLYFSEAVLNSSAEILNSLNSSQGTLVPINGKNRGNHR 302 (1079)
Q Consensus 223 ~i~fDrrsptV~L~t~vPe~~l~I~g~~rTV~aTN~~~dl~vyLtFSEpVtnssaeil~~L~vs~G~Ltp~~~~~~GNrr 302 (1079)
+|+||+ |++..+|.. +++..| ||+++. .+||+.+||+...
T Consensus 42 iV~~~~-----nVrVg~P~~---l~~kLr-vqS~gG----avYL~A~e~f~~t--------------------------- 81 (288)
T PF11920_consen 42 IVFFDK-----NVRVGVPAS---LNGKLR-VQSAGG----AVYLKASEPFPPT--------------------------- 81 (288)
T ss_pred EEEcCc-----CeEEcCChh---hhhcEE-EeeeCC----EEEEeccCCCCcc---------------------------
Confidence 455555 345556653 677777 888876 6799999986322
Q ss_pred EEEEEeecccceEEEEEeecccccccCCCCCcCCCceeeeecCCCCe
Q 001432 303 FGFMVANISSIAIITVSLKSNSIISRYGTPVLPIDPVTFLYDSQRPA 349 (1079)
Q Consensus 303 f~f~l~n~S~~gvVTVsl~a~si~draGn~vs~sap~tflyD~trPt 349 (1079)
-.+|.+.+++++|-+++.|+... ....+-.|+..+|+...++
T Consensus 82 -RLqlq~~~~GeiILLDv~A~~~~----~~~~~~epVrIv~~~~~~~ 123 (288)
T PF11920_consen 82 -RLQLQDVESGEIILLDVSATPAA----DGQPPLEPVRIVYEGEVET 123 (288)
T ss_pred -eEEEEEcCCCcEEEEEEEecccc----CCCCCCCCEEEEcCCCCcc
Confidence 35667777778899999887632 2233445778888776666
No 16
>PF15194 TMEM191C: TMEM191C family
Probab=43.69 E-value=6.6 Score=38.88 Aligned_cols=53 Identities=32% Similarity=0.408 Sum_probs=41.3
Q ss_pred ccccchhhHHHhhhhhhHHHHHHHHhHhhhceeeeeecCCCCCCCceeehhhHHHHHHHHhhhhcccc
Q 001432 809 EDAEAPFIQKLFGILRIYYTLLESVKRVSLGILAGVYTDDWSSKTPTVVLLCITSFQLFFMVLKKPFI 876 (1079)
Q Consensus 809 e~~eap~~~kl~G~~R~~y~~ld~~rRv~LGi~aga~~~~~ss~~~~~~~L~It~~Ql~flvl~KPfi 876 (1079)
|-++|-|-+|+||...+ ..+|+.+||.+ ++-..+-|..-..-++|++|.||..
T Consensus 34 EvArAdce~rlfgg~ga-----~~~RlwaLgaL----------qtLlllPL~fL~l~lly~~L~~p~a 86 (121)
T PF15194_consen 34 EVARADCEKRLFGGAGA-----GSIRLWALGAL----------QTLLLLPLGFLALPLLYLVLVKPDA 86 (121)
T ss_pred HHHHHHHHHHcccCCch-----hHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHcChhh
Confidence 67899999999999888 66799999876 3333344556667899999999974
No 17
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.34 E-value=27 Score=45.04 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=87.4
Q ss_pred hhhhhHHHHHHHHhHhhhceeeeeecCCCCCCCceeehhhHHHHHHH----Hhhhhccccc-cCceEEEEEeeeeehhhh
Q 001432 821 GILRIYYTLLESVKRVSLGILAGVYTDDWSSKTPTVVLLCITSFQLF----FMVLKKPFIK-KKIQLVEIISISCQVGLF 895 (1079)
Q Consensus 821 G~~R~~y~~ld~~rRv~LGi~aga~~~~~ss~~~~~~~L~It~~Ql~----flvl~KPfik-r~VqlVE~isl~cevgvF 895 (1079)
=..||++++--.-|.+ .++...|+++|+++.+.++.+|+. .|+.-=|-.. .-|-..|.+-|.|++.-.
T Consensus 647 KtnrI~rif~~~~k~~-------~~~~~is~~~q~~i~~~l~~iQlvi~~~Wlv~~~p~~~~~~~~~~~~~~L~C~~~~~ 719 (878)
T KOG1056|consen 647 KTNRIARIFEFSKKSI-------QRPRFISPWSQVLITFILIGIQLVICVSWLVVEPPGSVRTYVSRREVVILKCTEVDL 719 (878)
T ss_pred HHHHHHHHHhcccccc-------cccceeccchHHHHHHHHhhheeEEEEEEEeecCCccccccccccceEEEEecCcch
Confidence 3567888776666654 678888999999999999999975 4555566664 444455889999998655
Q ss_pred hhhee---------------eccccC--CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c--hhHHhhH
Q 001432 896 TLCLV---------------FIEKEF--SSGGETKVGISMLALFLVGYFAQMINEWYALYRQVKQLDPT-T--KSLLSGL 955 (1079)
Q Consensus 896 ~~~~~---------------ll~~~~--~~~~~~~~gi~Ml~l~~~~f~aq~~NEWyAl~~q~~~Ls~~-~--~S~~~Gl 955 (1079)
+.+.. ++.++. -..|.+-+|..|+.-+++ |+|.+---.-.+.. + --....+
T Consensus 720 ~f~~~l~Y~~lL~~~Ct~yA~ktR~~peNFNEaK~I~Ftmy~t~ii---------WlAfipi~~~t~~~~~~a~~~is~~ 790 (878)
T KOG1056|consen 720 GFLLSLGYSGLLILSCTVYAFKTRNLPENFNEAKFIGFTMYTTCII---------WLAFIPIYFGTDHKIQDATLCISLS 790 (878)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhhhhHHHHHHH---------HHHHHHHHhccCcceeeeehehhhH
Confidence 44332 233333 345666677777665543 77766544444431 1 1233445
Q ss_pred HHhhcceeEeeccccc
Q 001432 956 KVASFGVLLLVFPQKL 971 (1079)
Q Consensus 956 k~a~~gl~l~~lp~~~ 971 (1079)
--+...|..+|+|+-.
T Consensus 791 lSasv~Lg~lf~PK~y 806 (878)
T KOG1056|consen 791 LSASVALGCLFIPKVY 806 (878)
T ss_pred hhhhhhheeEecCcEE
Confidence 5577788889999733
No 18
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.20 E-value=1.4e+03 Score=34.05 Aligned_cols=316 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred CceEEEEEEeecCCccCcceeEEEEe------CCCCCcCCCCCceeeccCCCCcEEEEEEEeCCCCCCccceeeEeecCC
Q 001432 44 NSATFLFQVLVAGNYNCTDCRISCKL------DDGIASDCGTWEVSYTGLHDGNHTFEVCSYGSQGVGCSSHNWIVDTVP 117 (1079)
Q Consensus 44 tsAtF~F~v~~~~g~~C~~csf~CkL------Dg~~~~dC~s~~vs~s~L~DG~HTF~V~A~~~~G~~~AsysWTVDTtp 117 (1079)
++-++.|++....| .+.+|+=.+ |+..+..=+- ..+++=.+-|..++.|.|...-|...++.+++|.--.
T Consensus 1622 t~~~v~l~~~~~~G---TnvsysW~~~~~n~~dg~~~~~tGk-~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi 1697 (2740)
T TIGR00864 1622 TNHTVQFHAGFKDG---TNLSFSWNAILDNEPDGPAFAGSGK-GAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLEPA 1697 (2740)
T ss_pred cCCEEEeeeccCCC---CeeEEEEEEecCCCCCCccccccCc-eeEEecCCCceEEEEEEEeecccceeeEEEEEEEEEc
Q ss_pred CceeeccCcccCccccEEEEEEecccccCCC-------CcccccccccceEEeccccccccceEEeecCceEEEEEeecc
Q 001432 118 PTAYITASSSFTNAKNVSVNISFTEPCCSRG-------GFGCSSVNACNLLVYGAGQVIPSSLITVQRSLEYSLLVSLSS 190 (1079)
Q Consensus 118 PTa~Its~~~~Tna~nVTV~ItFSE~~tg~G-------GF~cssinacdl~V~G~G~V~pSsl~vv~pg~~YSl~VtlS~ 190 (1079)
+.+.+.+.+... +.+..|+|++ +-..|.+ |-+|+..- -.|+..+.....-.|+|.|+...
T Consensus 1698 ~~L~L~aS~~~a-avn~~V~fs~-~lt~GS~vty~W~~gdG~s~~~-----------s~p~~tHtf~~~G~y~VtVta~N 1764 (2740)
T TIGR00864 1698 GNLMLQASDNPA-AVNALINLSA-ELAEGSGLQYRWFLEEGDDLET-----------SEPFMSHSFPSAGLHLVTMKAFN 1764 (2740)
T ss_pred CceEEeccCCcc-cCCCeEEEEE-EecCCCCcEEEEEECCCCCccc-----------CCCceEEEccCCceEEEEEEEEc
Q ss_pred cceeeEEEEEe-------cccccccccC--------------CccccccCceEEEEEeccc----eeeeeeeccccceee
Q 001432 191 NVQYGRVILVM-------DKSFCTDTAG--------------NIFSRAENSSFYVHFDRRS----LFVDLRSHVPEKLLQ 245 (1079)
Q Consensus 191 ~~~~GrVil~m-------a~n~ctDaAG--------------N~ftr~~~Ss~~i~fDrrs----ptV~L~t~vPe~~l~ 245 (1079)
++......+.+ .-.+-.+-.+ -....+.|.+..=+||... -.|..+-..|-..-.
T Consensus 1765 ~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV 1844 (2740)
T TIGR00864 1765 ELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAI 1844 (2740)
T ss_pred cccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEE
Q ss_pred ccCcceEEEeccCCcceEEEEEecc--ccccchHHHHhhcccccceeeeccCcCCCcceEEEEEeecccceEEEEEeecc
Q 001432 246 LNNKTRTVQATNDDEKLKVYLYFSE--AVLNSSAEILNSLNSSQGTLVPINGKNRGNHRFGFMVANISSIAIITVSLKSN 323 (1079)
Q Consensus 246 I~g~~rTV~aTN~~~dl~vyLtFSE--pVtnssaeil~~L~vs~G~Ltp~~~~~~GNrrf~f~l~n~S~~gvVTVsl~a~ 323 (1079)
+|.|+|+.+...+..+|.= ||.+. .|.++....-+ |+...|.+.-..+. .|+...+=+
T Consensus 1845 ------~L~AsN~vs~~~~s~~~~VQe~I~~L------~L~as~~~~~~-------n~~v~fsa~l~~GS-~Vtf~w~fG 1904 (2740)
T TIGR00864 1845 ------RLNASNAVSGKSASREFFAEEPIFGL------ELKASKKIAAI-------GEKVEFQILLAAGS-AVNFRLQIG 1904 (2740)
T ss_pred ------EEEEEcccCcceeeeeEEEEEecceE------EEecccccccC-------CCEEEEEEEecCCC-ceEEEEEeC
Q ss_pred cccccCCCCCcCCCceeeeec-CCCCeEEEecCCCCcccccceeEEEEeeecccceeecceEEecceecceeeecccEEE
Q 001432 324 SIISRYGTPVLPIDPVTFLYD-SQRPAVRLSTTSSTRTRQDSIPILIKFLKPVFGFNSSLISISGGHLQSFQEIRRSIYI 402 (1079)
Q Consensus 324 si~draGn~vs~sap~tflyD-~trPtV~LSTss~~~T~~~~i~Vti~FsEpV~GF~sSdItVsnGtL~~F~evS~s~Yt 402 (1079)
. |.++.-....++.+= ...+...++=...+.=.....++.|++.|||.| ++|.+..-..|-.....+|+
T Consensus 1905 d-----gs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~g-----L~I~~~c~~~~~~g~~~tF~ 1974 (2740)
T TIGR00864 1905 G-----AAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRG-----LQIPDCCAAGIATGEEKNFT 1974 (2740)
T ss_pred C-----CCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccc-----eEecCCcccceecCceEEEE
Q ss_pred EEEE
Q 001432 403 LEIQ 406 (1079)
Q Consensus 403 ~~Vt 406 (1079)
+.|+
T Consensus 1975 A~v~ 1978 (2740)
T TIGR00864 1975 ANVQ 1978 (2740)
T ss_pred EEEe
No 19
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.76 E-value=32 Score=43.06 Aligned_cols=55 Identities=38% Similarity=0.662 Sum_probs=44.8
Q ss_pred eehhHHHHHHHHHHHHH---------------------HHHHHHHhhccchhhhhhhhcccccccceeeEEEEeCCCCcc
Q 001432 697 LGILLLAVVSFLLLSLL---------------------LFLSVGITLGKLLQYKEVHQEGQRFHWYQEIVRVTLGPGKRG 755 (1079)
Q Consensus 697 vGilLl~v~~~~llal~---------------------lfL~vgi~~G~l~qYKEv~~~~~~~~wy~~l~r~~lG~g~~G 755 (1079)
.|-.-+.|+.++.+|-+ +||-+||.+|+.=-|+| +|.| |
T Consensus 178 lGYvgfsV~fs~avA~l~~grld~~~ar~~rpWtl~aw~fLT~GIvlGs~WAY~e------------------LGWG--G 237 (648)
T COG1138 178 LGYVGFSVAFSVAVAGLLTGRLDSAWARWKRPWTLAAWLFLTLGIVLGSWWAYYE------------------LGWG--G 237 (648)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHH------------------hcCc--c
Confidence 36666777777766664 69999999999999988 5888 9
Q ss_pred ccccCCCCCccchhhc
Q 001432 756 QWTWKNQPDSSYLTIL 771 (1079)
Q Consensus 756 qW~~k~~~~s~~l~r~ 771 (1079)
.|+|.-=-+++|+|=+
T Consensus 238 wWfWDPVENaSlmPWL 253 (648)
T COG1138 238 WWFWDPVENASLMPWL 253 (648)
T ss_pred ccccCcccccccchHH
Confidence 9999998888887753
No 20
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=37.89 E-value=32 Score=30.21 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=15.6
Q ss_pred cccccCCccccccCceEEEEEecccee
Q 001432 206 CTDTAGNIFSRAENSSFYVHFDRRSLF 232 (1079)
Q Consensus 206 ctDaAGN~ftr~~~Ss~~i~fDrrspt 232 (1079)
++|.|||.... +.-.+.+|...|.
T Consensus 31 a~D~AGN~~~~---~~~~~i~d~~~p~ 54 (60)
T PF12245_consen 31 ATDKAGNTSSS---TTQIVIVDNTAPA 54 (60)
T ss_pred EEECCCCEEEe---eeEEEEEcCCCCC
Confidence 59999996543 4445556666554
No 21
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=36.76 E-value=1.9e+02 Score=37.68 Aligned_cols=136 Identities=20% Similarity=0.239 Sum_probs=75.4
Q ss_pred ceeEEEEeCCCC---CcCCCCC-------------ceeeccC-CCCcEEEEEEEeCC-CC--CCc---cceeeEeecC-C
Q 001432 62 DCRISCKLDDGI---ASDCGTW-------------EVSYTGL-HDGNHTFEVCSYGS-QG--VGC---SSHNWIVDTV-P 117 (1079)
Q Consensus 62 ~csf~CkLDg~~---~~dC~s~-------------~vs~s~L-~DG~HTF~V~A~~~-~G--~~~---AsysWTVDTt-p 117 (1079)
.-...||=.+.. -..|+.+ .|..++| ++-+.||+|.|... .+ +.+ +.-+.|-+-. |
T Consensus 364 ~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~p 443 (996)
T KOG0196|consen 364 TYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAP 443 (996)
T ss_pred EEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCC
Confidence 344556655543 4556643 3667777 58899999999544 33 222 2222222211 2
Q ss_pred CceeeccCcccCccccEEEEEEecccccCCCCcccccccccceEEeccccccccceEEeecCceEEEEEeecccceeeEE
Q 001432 118 PTAYITASSSFTNAKNVSVNISFTEPCCSRGGFGCSSVNACNLLVYGAGQVIPSSLITVQRSLEYSLLVSLSSNVQYGRV 197 (1079)
Q Consensus 118 PTa~Its~~~~Tna~nVTV~ItFSE~~tg~GGF~cssinacdl~V~G~G~V~pSsl~vv~pg~~YSl~VtlS~~~~~GrV 197 (1079)
|++.+.- ....++=+++++++||....|. |-.-.|.+|-.+. +..+...++...++.-..+|.|++.|+-
T Consensus 444 s~V~~~r---~~~~~~~sitlsW~~p~~png~-----ildYEvky~ek~~-~e~~~~~~~t~~~~~ti~gL~p~t~Yvf- 513 (996)
T KOG0196|consen 444 SPVSVLR---QVSRTSDSITLSWSEPDQPNGV-----ILDYEVKYYEKDE-DERSYSTLKTKTTTATITGLKPGTVYVF- 513 (996)
T ss_pred CccceEE---EeeeccCceEEecCCCCCCCCc-----ceeEEEEEeeccc-cccceeEEecccceEEeeccCCCcEEEE-
Confidence 2221110 0112333788999999987765 2223455555554 5666666776666777777777777652
Q ss_pred EEEecccccccccCC
Q 001432 198 ILVMDKSFCTDTAGN 212 (1079)
Q Consensus 198 il~ma~n~ctDaAGN 212 (1079)
.+- |.++||-
T Consensus 514 --qVR---arT~aG~ 523 (996)
T KOG0196|consen 514 --QVR---ARTAAGY 523 (996)
T ss_pred --EEE---EecccCC
Confidence 221 4566665
No 22
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=35.26 E-value=67 Score=31.74 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=13.2
Q ss_pred eeeecccEEEEEEEECC-CeEEEE
Q 001432 393 FQEIRRSIYILEIQANA-DTVSVN 415 (1079)
Q Consensus 393 F~evS~s~Yt~~Vta~~-g~VsV~ 415 (1079)
+.| ....|+++|+-.. |+|+|.
T Consensus 57 itE-~~GvYtATl~Gt~~G~vtI~ 79 (99)
T PF09134_consen 57 ITE-NPGVYTATLKGTSAGEVTIT 79 (99)
T ss_dssp -EE--SS-EEEEEE-SS-EEEEEE
T ss_pred ccc-cCCEEEEEEEcccCceEEEE
Confidence 444 2346999998777 888774
No 23
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.06 E-value=34 Score=34.61 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=11.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhccc
Q 001432 628 LAVIGGSLILLHILLVLIVKFRKKN 652 (1079)
Q Consensus 628 l~Vigg~l~llH~lll~~lk~R~~~ 652 (1079)
+||++|-+.++ +|++|++|+|+|+
T Consensus 71 ~gv~aGvIg~I-lli~y~irR~~Kk 94 (122)
T PF01102_consen 71 FGVMAGVIGII-LLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHS--
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 46666664444 4444444444444
No 24
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=32.90 E-value=91 Score=31.00 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.5
Q ss_pred EeecCCCceeeccCcccCccccEEEEEEeccccc
Q 001432 112 IVDTVPPTAYITASSSFTNAKNVSVNISFTEPCC 145 (1079)
Q Consensus 112 TVDTtpPTa~Its~~~~Tna~nVTV~ItFSE~~t 145 (1079)
+=|.+||.....+..+.++..--++.++|+|+-.
T Consensus 9 ~~d~T~p~~~~~sts~A~~~nG~~lVLtY~e~L~ 42 (101)
T TIGR02059 9 TKDLTAPVLLFGSTSTAVATNGNLLVLTFNEPLA 42 (101)
T ss_pred CCCcCCceEeecccceeeeccCCEEEEEechhcC
Confidence 6699999998776544443222467789999865
No 25
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=27.53 E-value=2.3e+02 Score=25.73 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=38.5
Q ss_pred CceEEEEEEeecCCccCcceeEEEEeCCCCCcCCCCCceeec-cCC-CCcEEEEEEEeCCCCCCccce
Q 001432 44 NSATFLFQVLVAGNYNCTDCRISCKLDDGIASDCGTWEVSYT-GLH-DGNHTFEVCSYGSQGVGCSSH 109 (1079)
Q Consensus 44 tsAtF~F~v~~~~g~~C~~csf~CkLDg~~~~dC~s~~vs~s-~L~-DG~HTF~V~A~~~~G~~~Asy 109 (1079)
.+++..+.....+ +.+...|||.....-+ + .|+ .+. +|.||+..+|.+.+|..+..|
T Consensus 8 ~~~~v~l~~~~~~------~~IyYT~DGs~Pt~~S-~--~Y~~Pi~i~~~ttVka~a~~~~g~~s~v~ 66 (67)
T PF13290_consen 8 SNTTVTLSTADPD------ATIYYTTDGSEPTPSS-P--LYTGPITITGTTTVKARAFDPDGNSSDVV 66 (67)
T ss_pred cceEEEEEeCCCC------CEEEEEcCCCccccCC-C--eeccCEEecCCEEEEEEEEcCCCcccccC
Confidence 3555666665554 8999999998865432 2 343 332 599999999999998544433
No 26
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=27.31 E-value=2.2e+02 Score=28.48 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=42.3
Q ss_pred cCCCCeEEEecCCCCcccccceeEEEEeeeccccee-----ecceEEe-cceecce--eeeccc--EEEEEEE-ECC-Ce
Q 001432 344 DSQRPAVRLSTTSSTRTRQDSIPILIKFLKPVFGFN-----SSLISIS-GGHLQSF--QEIRRS--IYILEIQ-ANA-DT 411 (1079)
Q Consensus 344 D~trPtV~LSTss~~~T~~~~i~Vti~FsEpV~GF~-----sSdItVs-nGtL~~F--~evS~s--~Yt~~Vt-a~~-g~ 411 (1079)
|-+.|......++++ ++..-=.+.++|+|...+-. .+.++|. ||.-... ..++++ +-++++. +.. |+
T Consensus 11 d~T~p~~~~~sts~A-~~~nG~~lVLtY~e~L~~~t~~~p~~~~FtVtVnG~~n~Vt~VsV~~s~ktVTLTL~~~V~~Gq 89 (101)
T TIGR02059 11 DLTAPVLLFGSTSTA-VATNGNLLVLTFNEPLADITNHAPTRDQFAVTVNGAPNTVTSVSLGGSNTTITLTLAQVVEDGD 89 (101)
T ss_pred CcCCceEeeccccee-eeccCCEEEEEechhcCccccCCCCCCcEEEEeCCcEeeEEEEEEcCcccEEEEEecccccCCC
Confidence 888888887776644 44444567789999844221 2334333 5543332 256777 6666663 544 33
Q ss_pred -EEEEe
Q 001432 412 -VSVNV 416 (1079)
Q Consensus 412 -VsV~V 416 (1079)
|+|.=
T Consensus 90 ~VTVsY 95 (101)
T TIGR02059 90 EVTLSY 95 (101)
T ss_pred EEEEEe
Confidence 88764
No 27
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=26.90 E-value=4.2e+02 Score=24.61 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=35.6
Q ss_pred CCceEEEEEEeecCCccCcceeEEEEeCCCCCcCCCCCceeeccCCCCcEEEEEE
Q 001432 43 LNSATFLFQVLVAGNYNCTDCRISCKLDDGIASDCGTWEVSYTGLHDGNHTFEVC 97 (1079)
Q Consensus 43 ~tsAtF~F~v~~~~g~~C~~csf~CkLDg~~~~dC~s~~vs~s~L~DG~HTF~V~ 97 (1079)
...++....+.|.+|+||.+....++++++....+... ++.--.+|.-++.++
T Consensus 17 ~d~~~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~--~~~Td~~G~a~~~l~ 69 (92)
T smart00634 17 SDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKG--TATTDANGIATVTLT 69 (92)
T ss_pred cccEEEEEEEECCCCCCcCCCEEEEEECCCceeeccCC--eeeeCCCCEEEEEEE
Confidence 47899999999999999998889999887642223221 222223555555544
No 28
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=25.93 E-value=1e+02 Score=36.15 Aligned_cols=32 Identities=6% Similarity=0.160 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhhccc
Q 001432 705 VSFLLLSLLLFLSVGITLGKLLQYKEVHQEGQ 736 (1079)
Q Consensus 705 ~~~~llal~lfL~vgi~~G~l~qYKEv~~~~~ 736 (1079)
...+.+++.+++.+++...|.+.||++.+.-+
T Consensus 216 ~~~~~v~v~~~~~l~~~~~r~~n~~~~~~~~~ 247 (388)
T TIGR00771 216 HEWTKMGVPQAMLIGAEFGRIVNRISPVKITE 247 (388)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 35566778888889999999999999886443
No 29
>TIGR03749 conj_TIGR03749 integrating conjugative element protein, PFL_4704 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=25.24 E-value=4.3e+02 Score=30.21 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=54.2
Q ss_pred ceEEEEEeccceeeeeeeccccceee------------ccCcceEEEeccCCcceEEEEEeccccccchHHHHhhccccc
Q 001432 220 SSFYVHFDRRSLFVDLRSHVPEKLLQ------------LNNKTRTVQATNDDEKLKVYLYFSEAVLNSSAEILNSLNSSQ 287 (1079)
Q Consensus 220 Ss~~i~fDrrsptV~L~t~vPe~~l~------------I~g~~rTV~aTN~~~dl~vyLtFSEpVtnssaeil~~L~vs~ 287 (1079)
....+++||.+..|.|... -|-++. +++.. -||++.. .+||..+||+.+.
T Consensus 12 a~E~~~Wer~Pl~I~L~Vg-qERiVf~~~nVrvg~P~~l~~kl-RVqS~gG----avYL~A~e~f~~t------------ 73 (257)
T TIGR03749 12 AVEILKWERLPLAIPLVVG-QERIVFVDKNVRVGVPQQLAGKL-RVQSTGG----AVYLRASEPFPPT------------ 73 (257)
T ss_pred chhhheecCCceeeeccCC-ceEEEEcCCCeEECCChhhccce-EEEEeCC----EEEEeccCCCCCc------------
Confidence 3445677777765555431 222222 33332 2566655 5688888886443
Q ss_pred ceeeeccCcCCCcceEEEEEeecccceEEEEEeecccccccCCCCCcCCCceeeeecCCCCe
Q 001432 288 GTLVPINGKNRGNHRFGFMVANISSIAIITVSLKSNSIISRYGTPVLPIDPVTFLYDSQRPA 349 (1079)
Q Consensus 288 G~Ltp~~~~~~GNrrf~f~l~n~S~~gvVTVsl~a~si~draGn~vs~sap~tflyD~trPt 349 (1079)
-.+|.+..++++|-++|.|+. .+....+-.|+..+|+...++
T Consensus 74 ----------------RLqlq~~~sGeiIlLDi~A~~----~~~~~~~~epVrIv~~~~~~~ 115 (257)
T TIGR03749 74 ----------------RLQLQDVDSGEIILLDIAATP----KKAGQKSLEPVRIVYESKVAT 115 (257)
T ss_pred ----------------eEEEEEcCCCCEEEEEEeccc----ccCCCCCCCCEEEEccCCCcc
Confidence 345667777788889998863 233344455788888755554
No 30
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=25.04 E-value=3.1e+02 Score=24.12 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=34.3
Q ss_pred CceEEEEEEeecCCccCcceeEEEEeCCCCCcCCCC-CceeeccCCCCcEEEEEEEeCCCC
Q 001432 44 NSATFLFQVLVAGNYNCTDCRISCKLDDGIASDCGT-WEVSYTGLHDGNHTFEVCSYGSQG 103 (1079)
Q Consensus 44 tsAtF~F~v~~~~g~~C~~csf~CkLDg~~~~dC~s-~~vs~s~L~DG~HTF~V~A~~~~G 103 (1079)
.+.+|......++ ....++=.+.++ ...+.. +..+++-.+.|.+++.|.+.+.+|
T Consensus 15 ~~v~~~~~~~~~~----~~~~~~W~fgdg-~~~~~~~~~~~~~y~~~G~y~v~l~v~d~~g 70 (81)
T cd00146 15 ASVTFSASDSSGG----SIVSYKWDFGDG-EVSSSGEPTVTHTYTKPGTYTVTLTVTNAVG 70 (81)
T ss_pred ccEEEEEEeCCCC----CEEEEEEEeCCC-CccccCCCceEEEcCCCcEEEEEEEEEeCCC
Confidence 4445554444431 124444445444 233444 567888889999999999999987
No 31
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.93 E-value=70 Score=27.02 Aligned_cols=30 Identities=43% Similarity=0.831 Sum_probs=23.3
Q ss_pred chhhhcccchhhhhhhhHHHHHHHHHHHHhhh
Q 001432 617 GWREFDRSMFWLAVIGGSLILLHILLVLIVKF 648 (1079)
Q Consensus 617 gW~df~rnmFWl~Vigg~l~llH~lll~~lk~ 648 (1079)
-|+.|.|| -+|++|..++++.+++-++--+
T Consensus 8 ~~~~f~~n--k~a~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 8 AWRRFRRN--KLAVIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHhC--chHHHHHHHHHHHHHHHHHHHH
Confidence 46666666 7899999999998888776533
No 32
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=24.18 E-value=55 Score=32.15 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=35.1
Q ss_pred CCccchhhh-cccchhhhhhhhHHHHHHHHHHHHhhhhccccc
Q 001432 613 NHMNGWREF-DRSMFWLAVIGGSLILLHILLVLIVKFRKKNSE 654 (1079)
Q Consensus 613 ~~~~gW~df-~rnmFWl~Vigg~l~llH~lll~~lk~R~~~~~ 654 (1079)
+|.+.|-+| +||==|+-|+-.---.|-||+|.++.++|..++
T Consensus 56 ~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~KKe~~~ 98 (100)
T PF06363_consen 56 NKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIFKKEKSK 98 (100)
T ss_pred HHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 467789887 799999999988778889999999988887644
No 33
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=22.01 E-value=5.4e+02 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=22.3
Q ss_pred CCCCceeeccCCCCcEEEEEEEeCCCC
Q 001432 77 CGTWEVSYTGLHDGNHTFEVCSYGSQG 103 (1079)
Q Consensus 77 C~s~~vs~s~L~DG~HTF~V~A~~~~G 103 (1079)
+.....+++-.+.|.|++.|.+.+..|
T Consensus 42 ~~~~~~~~~y~~~G~y~v~l~v~n~~g 68 (79)
T smart00089 42 STGPTVTHTYTKPGTYTVTLTVTNAVG 68 (79)
T ss_pred cCCCCEEEEeCCCcEEEEEEEEEcCCC
Confidence 444557778889999999999999887
No 34
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=21.80 E-value=4.3e+02 Score=27.09 Aligned_cols=92 Identities=11% Similarity=0.205 Sum_probs=55.3
Q ss_pred eecCCCceeecc-C------cccCccccEEEEEEecccccCCCCcccccccccceEE------ecccccc---ccceEEe
Q 001432 113 VDTVPPTAYITA-S------SSFTNAKNVSVNISFTEPCCSRGGFGCSSVNACNLLV------YGAGQVI---PSSLITV 176 (1079)
Q Consensus 113 VDTtpPTa~Its-~------~~~Tna~nVTV~ItFSE~~tg~GGF~cssinacdl~V------~G~G~V~---pSsl~vv 176 (1079)
.|+..|++.... + .....+..+.|...++... ++|. -.|.+ ++-+.-. -..|.+-
T Consensus 10 ~D~~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d~~-~i~s--------i~VeIH~nfd~H~h~~~~~~~~~~~~~~ 80 (132)
T PF15418_consen 10 KDTEKPVITLNEIGAFPENCKVATRGDDIHFEADISDNS-AIKS--------IKVEIHNNFDHHTHSTEAGECEKPWVFE 80 (132)
T ss_pred cccCCCEEEeeecccCCCCCeEEecCCcEEEEEEEEccc-ceeE--------EEEEEecCcCcccccccccccccCcEEE
Confidence 789999997762 1 1234455567777777643 3332 23556 3322100 1122221
Q ss_pred --------ecCceEEEEEeecccceeeEEEEEecccccccccCCcccc
Q 001432 177 --------QRSLEYSLLVSLSSNVQYGRVILVMDKSFCTDTAGNIFSR 216 (1079)
Q Consensus 177 --------~pg~~YSl~VtlS~~~~~GrVil~ma~n~ctDaAGN~ftr 216 (1079)
..+..+...+.++.+..-|.=-+.+- |||++||....
T Consensus 81 ~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH~~i~---VtD~~Gn~~~~ 125 (132)
T PF15418_consen 81 QDYDIYGGKKNYDFHEHIDIPADAPAGDYHFMIT---VTDAAGNQTEE 125 (132)
T ss_pred EEEcccCCcccEeEEEeeeCCCCCCCcceEEEEE---EEECCCCEEEE
Confidence 12446667788888888888888776 89999996654
No 35
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.61 E-value=70 Score=35.53 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=23.7
Q ss_pred hhhhhhhcccccccceeeEEEEeCCCCccccccCCCCCccchhhcccccccCCCCceEEeec
Q 001432 727 QYKEVHQEGQRFHWYQEIVRVTLGPGKRGQWTWKNQPDSSYLTILGPLFEDLRGPPKYMLSQ 788 (1079)
Q Consensus 727 qYKEv~~~~~~~~wy~~l~r~~lG~g~~GqW~~k~~~~s~~l~r~G~lFEd~rGPP~~~l~~ 788 (1079)
.|+++.-+..--.|.=+- .|+.|+-+++ -++= |---+--.-=|+|=.+|.-
T Consensus 79 ~Y~qieGqpGAa~avL~~--------lr~~W~~~~p--Va~n-r~qD~V~R~vGrpGVvLVg 129 (224)
T PF13829_consen 79 AYAQIEGQPGAAGAVLDN--------LRRGWRVTEP--VAVN-RTQDAVHRVVGRPGVVLVG 129 (224)
T ss_pred HHHHhcCCCchHHHHHHh--------hcCCcccCCc--eeec-CccceEEEecCCCcEEEEe
Confidence 576664332233454332 3446766662 2111 2211222334888888773
No 36
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.50 E-value=1.5e+02 Score=30.93 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=24.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhhhhccccc
Q 001432 624 SMFWLAVIGGSLILLHILLVLIVKFRKKNSE 654 (1079)
Q Consensus 624 nmFWl~Vigg~l~llH~lll~~lk~R~~~~~ 654 (1079)
+.++++++...++++=+++..++|.|....=
T Consensus 16 ~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKy 46 (149)
T PF11694_consen 16 DYLRYILIIILLLVLIFFFIKYLRNRLDTKY 46 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 4567888888888888888888877776633
No 37
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.13 E-value=54 Score=28.64 Aligned_cols=35 Identities=40% Similarity=0.659 Sum_probs=21.2
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHHHhhccchh
Q 001432 693 SGLILGILLLAVVSFLLLSLLLFLSVGITLGKLLQ 727 (1079)
Q Consensus 693 ~gi~vGilLl~v~~~~llal~lfL~vgi~~G~l~q 727 (1079)
.|+++|++.+.+--.=-+-+++|..+|++.|+.++
T Consensus 16 ~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 16 IGLILALLILTFGFWKTLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555544433334556677788999998664
No 38
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=20.36 E-value=90 Score=28.28 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHhhHHHhhcceeE
Q 001432 927 FAQMINEWYALYRQVKQLDPTTKSLLSGLKVASFGVLL 964 (1079)
Q Consensus 927 ~aq~~NEWyAl~~q~~~Ls~~~~S~~~Glk~a~~gl~l 964 (1079)
+-+.++||..+++-..+ |+++.|+.=+|+.++|+++
T Consensus 10 ~~~f~~d~~rvl~~~~K--Pd~~Ef~~ia~~~~iG~~i 45 (61)
T PRK09400 10 VKNFLEDYKRVLKVARK--PTREEFLLVAKVTGLGILL 45 (61)
T ss_pred HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Confidence 34566777666655544 8999999999999988754
Done!