Query 001432
Match_columns 1079
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 21:34:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001432.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_31-35//hhsearch_pdb/001432hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pdd_A Glycoside hydrolase, fa 1.0 1 1 61.6 15.1 145 47-215 18-170 (190)
2 4a2l_A BT_4663, two-component 1.0 1 1 37.9 8.2 10 66-75 64-73 (795)
3 3ott_A Two-component system se 1.0 1 1 34.8 7.9 13 625-637 431-443 (758)
4 3pdd_A Glycoside hydrolase, fa 1.0 1 1 32.7 17.7 175 120-348 2-183 (190)
5 3qc5_X Platelet binding protei 1.0 1 1 25.6 9.2 38 113-153 154-191 (360)
6 3pe9_A Fibronectin(III)-like m 1.0 1 1 21.5 8.8 63 131-215 16-78 (98)
7 3lpw_A A77-A78 domain from tit 1.0 1 1 20.4 9.6 61 43-103 19-86 (197)
8 2knc_B Integrin beta-3; transm 1.0 1 1 19.5 1.5 50 706-755 20-78 (79)
9 4go6_B HCF C-terminal chain 1; 1.0 1 1 18.9 5.7 66 81-146 47-113 (232)
10 1xf1_A C5A peptidase, SCP; hyd 1.0 1 1 18.9 5.1 58 87-149 793-853 (926)
No 1
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=1.00 E-value=1 Score=61.60 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEE--ECCCCCCCEEEEEEEECCCC--CCCCCEEEEEE-CCCCCEE
Q ss_conf 8999996428866854249987289977678999622--11478875799999707889--87640026863-1798211
Q 001432 47 TFLFQVLVAGNYNCTDCRISCKLDDGIASDCGTWEVS--YTGLHDGNHTFEVCSYGSQG--VGCSSHNWIVD-TVPPTAY 121 (1079)
Q Consensus 47 tF~F~v~~~~g~~C~~csf~CkLDg~~~~dC~s~~vs--~s~L~DG~HTF~V~A~~~~G--~~~AsysWTVD-TtpPTa~ 121 (1079)
.+.+.+.-.++ -+...++-.+||.........+.+ ...+.+|.|++.|+|.|.+| ..++..+.+|| +.||++.
T Consensus 18 ~vtv~~~As~d--~~V~~Ve~~~dg~~v~~~t~~~ys~~~~~~~~G~htlta~A~D~aGn~s~s~~v~vtV~~~~~Ptv~ 95 (190)
T 3pdd_A 18 DINISATVKSK--TPVSKVEFYNGDTLISSDTTAPYTAKITGAAVGAYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVK 95 (190)
T ss_dssp CEEEEEEECCS--SCEEEEEEEETTEEEEEECSSSEEEEECSCCSEEEEEEEEEEETTSCEEECCCEEEEEECCCCCEEE
T ss_pred EEEEEEEEECC--CCEEEEEEEECCEEECCCCCCCEEEEECCCCCCCEEEEEEEEECCCCEEEECCEEEEECCCCCCCEE
T ss_conf 69999999689--9899999999999991005786599842678800999999998999875612124896168897101
Q ss_pred ECCCCCCC---CCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEE
Q ss_conf 10586657---652079999951454589984224666300699426411356507842182699999604651232999
Q 001432 122 ITASSSFT---NAKNVSVNISFTEPCCSRGGFGCSSVNACNLLVYGAGQVIPSSLITVQRSLEYSLLVSLSSNVQYGRVI 198 (1079)
Q Consensus 122 Its~~~~T---na~nVTV~ItFSE~~tg~GGF~cssinacdl~V~G~G~V~pSsl~vi~pg~~YSl~VtlS~~~~~GrVi 198 (1079)
|+++.... ...++++..+.+++. | . |. .+.+|-.|....+ .....|++.... ..|.-+
T Consensus 96 itsP~~g~~~~~~~~vtl~~~AsD~~----g-~---V~--~Ve~~~dg~~v~t-----~t~~~y~~~~~~----~~G~~t 156 (190)
T 3pdd_A 96 LTAPKSNVVAYGNEFLKITATASDSD----G-K---IS--RVDFLVDGEVIGS-----DREAPYEYEWKA----VEGNHE 156 (190)
T ss_dssp EEECCTTCCCBTTSEEEEEEEEECSS----S-C---EE--EEEEEETTEEEEE-----ECSSSEEEEEEC----CSEEEE
T ss_pred ECCCCCCCEEECCCEEEEEEEEECCC----C-C---EE--EEEEEECCEEEEC-----CCCCCEEEEEEC----CCEEEE
T ss_conf 03888884893698699999997799----9-6---79--9999999999811-----367888999846----983299
Q ss_pred EEECCCCCCCCCCCCCC
Q ss_conf 99306610134589643
Q 001432 199 LVMDKSFCTDTAGNIFS 215 (1079)
Q Consensus 199 l~ma~n~ctDaAGN~ft 215 (1079)
+..- ++|.|||...
T Consensus 157 l~a~---A~D~aGn~s~ 170 (190)
T 3pdd_A 157 ISVI---AYDDDDAAST 170 (190)
T ss_dssp EEEE---EEETTCCBCC
T ss_pred EEEE---EEECCCCEEE
T ss_conf 9999---9999999972
No 2
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=1.00 E-value=1 Score=37.94 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=5.5
Q ss_pred EEEECCCCCC
Q ss_conf 9872899776
Q 001432 66 SCKLDDGIAS 75 (1079)
Q Consensus 66 ~CkLDg~~~~ 75 (1079)
-|+.||..|.
T Consensus 64 L~ryDG~~f~ 73 (795)
T 4a2l_A 64 VNKYDGYAFT 73 (795)
T ss_dssp EEEECSSCEE
T ss_pred CCCCCCCCEE
T ss_conf 7535798559
No 3
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=1.00 E-value=1 Score=34.79 Aligned_cols=13 Identities=15% Similarity=0.672 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 0156555438999
Q 001432 625 MFWLAVIGGSLIL 637 (1079)
Q Consensus 625 mFWl~Vigg~l~l 637 (1079)
-.|+|.-+||+..
T Consensus 431 ~lWigT~~~Gl~~ 443 (758)
T 3ott_A 431 QLWISTCLGGIFV 443 (758)
T ss_dssp EEEEEESSSCEEE
T ss_pred CEEEEECCCCEEE
T ss_conf 9999988885699
No 4
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=1.00 E-value=1 Score=32.70 Aligned_cols=175 Identities=14% Similarity=0.156 Sum_probs=94.4
Q ss_pred EEECCCCC---CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEE
Q ss_conf 11105866---576520799999514545899842246663006994264113565078421826999996046512329
Q 001432 120 AYITASSS---FTNAKNVSVNISFTEPCCSRGGFGCSSVNACNLLVYGAGQVIPSSLITVQRSLEYSLLVSLSSNVQYGR 196 (1079)
Q Consensus 120 a~Its~~~---~Tna~nVTV~ItFSE~~tg~GGF~cssinacdl~V~G~G~V~pSsl~vi~pg~~YSl~VtlS~~~~~Gr 196 (1079)
+.|+++.. ++.+.++++..+.++. || |. .+.+|-.|+...+ .....|++.... ...|.
T Consensus 2 V~ItsP~~g~~~~~g~~vtv~~~As~d----~~-----V~--~Ve~~~dg~~v~~-----~t~~~ys~~~~~---~~~G~ 62 (190)
T 3pdd_A 2 VTIDSPVAGERFEAGKDINISATVKSK----TP-----VS--KVEFYNGDTLISS-----DTTAPYTAKITG---AAVGA 62 (190)
T ss_dssp EEEEESCTTCEEETTSCEEEEEEECCS----SC-----EE--EEEEEETTEEEEE-----ECSSSEEEEECS---CCSEE
T ss_pred EEEECCCCCCEECCCCEEEEEEEEECC----CC-----EE--EEEEEECCEEECC-----CCCCCEEEEECC---CCCCC
T ss_conf 699438998997189969999999689----98-----99--9999999999910-----057865998426---78800
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEE-CCCEEEEEEECCCCCEEECCCCCEEEE--ECCCCCC-EEEEEEECCCC
Q ss_conf 9999306610134589643355743899973-132026642046410111067302899--5048765-38999842444
Q 001432 197 VILVMDKSFCTDTAGNIFSRAENSSFYVHFD-RRSLFVDLRSHVPEKLLQLNNKTRTVQ--ATNDDEK-LKVYLYFSEAV 272 (1079)
Q Consensus 197 Vil~ma~n~ctDaAGN~ftr~~~Ss~~i~fD-rrsptV~L~t~vPe~~l~I~g~~rTV~--aTN~~~d-l~vyLtFSEpV 272 (1079)
-++... ++|.+||... .+...+..| ..+|+|.+..+.....+.. +..-++. ++.+.+. -+|-++..
T Consensus 63 htlta~---A~D~aGn~s~---s~~v~vtV~~~~~Ptv~itsP~~g~~~~~-~~~vtl~~~AsD~~g~V~~Ve~~~d--- 132 (190)
T 3pdd_A 63 YNLKAV---AVLSDGRRIE---SPVTPVLVKVIVKPTVKLTAPKSNVVAYG-NEFLKITATASDSDGKISRVDFLVD--- 132 (190)
T ss_dssp EEEEEE---EEETTSCEEE---CCCEEEEEECCCCCEEEEEECCTTCCCBT-TSEEEEEEEEECSSSCEEEEEEEET---
T ss_pred EEEEEE---EEECCCCEEE---ECCEEEEECCCCCCCEEECCCCCCCEEEC-CCEEEEEEEEECCCCCEEEEEEEEC---
T ss_conf 999999---9989998756---12124896168897101038888848936-9869999999779996799999999---
Q ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 4614888752024540564126767775148899942266149999950361013579987688743664338898
Q 001432 273 LNSSAEILNSLNSSQGTLVPINGKNRGNHRFGFMVANISSIAIITVSLKSNSIISRYGTPVLPIDPVTFLYDSQRP 348 (1079)
Q Consensus 273 tnssaeil~~L~vs~G~Ltp~~~~~~GNrrf~f~l~n~S~~gvVTVsl~a~si~draGt~vs~sap~tflyD~trP 348 (1079)
|.+..... ...|.|..+. ..|.-++.+.| .|.+||-- .++++++..++.|-
T Consensus 133 ---------------g~~v~t~t----~~~y~~~~~~--~~G~~tl~a~A---~D~aGn~s-~s~~vtvtv~~~~~ 183 (190)
T 3pdd_A 133 ---------------GEVIGSDR----EAPYEYEWKA--VEGNHEISVIA---YDDDDAAS-TPDSVKIFVKQARL 183 (190)
T ss_dssp ---------------TEEEEEEC----SSSEEEEEEC--CSEEEEEEEEE---EETTCCBC-CCEEEEEEEBCGGG
T ss_pred ---------------CEEEECCC----CCCEEEEEEC--CCEEEEEEEEE---EECCCCEE-ECCEEEEEECCCCC
T ss_conf ---------------99981136----7888999846--98329999999---99999997-22049999887401
No 5
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=1.00 E-value=1 Score=25.61 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=18.8
Q ss_pred EECCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 63179821110586657652079999951454589984224
Q 001432 113 VDTVPPTAYITASSSFTNAKNVSVNISFTEPCCSRGGFGCS 153 (1079)
Q Consensus 113 VDTtpPTa~Its~~~~Tna~nVTV~ItFSE~~tg~GGF~cs 153 (1079)
.|++|||+.+-.+-.+=++-.+.|.+..++.. |+|+.+
T Consensus 154 ~Dt~pPtI~~P~eI~vYRGEevnft~~VTDNS---gk~~In 191 (360)
T 3qc5_X 154 KDTERPVVNVPSEITVYRGESFEYFATVTDNS---NAFDLA 191 (360)
T ss_dssp CCCCCCEEECCSEEEEETTCEEEEEEEEECTT---SCEEEE
T ss_pred CCCCCCCCCCCCCEEEECCCEEEEEEEEECCC---CCCEEE
T ss_conf 78889812677517998587079999985178---872331
No 6
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=1.00 E-value=1 Score=21.47 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCCCCCC
Q ss_conf 52079999951454589984224666300699426411356507842182699999604651232999993066101345
Q 001432 131 AKNVSVNISFTEPCCSRGGFGCSSVNACNLLVYGAGQVIPSSLITVQRSLEYSLLVSLSSNVQYGRVILVMDKSFCTDTA 210 (1079)
Q Consensus 131 a~nVTV~ItFSE~~tg~GGF~cssinacdl~V~G~G~V~pSsl~vi~pg~~YSl~VtlS~~~~~GrVil~ma~n~ctDaA 210 (1079)
+..+++..+.++.. |+ |. .+.+|-.|..... .....|++..+.. .|.-+|... |+|.+
T Consensus 16 g~~v~i~a~A~D~d---g~-----V~--kVef~vdg~~vg~-----dt~apy~~~w~~~----~G~htl~a~---AtD~~ 73 (98)
T 3pe9_A 16 NEFLKITATASDSD---GK-----IS--RVDFLVDGEVIGS-----DREAPYEYEWKAV----EGNHEISVI---AYDDD 73 (98)
T ss_dssp TSEEEEEEEECCSS---SC-----EE--EEEEEETTEEEEE-----ECSSSEEEEEECC----SEEEEEEEE---EEETT
T ss_pred CCEEEEEEEEEECC---CC-----EE--EEEEEECCEEECC-----CCCCCEEEEEECC----CCCEEEEEE---EEECC
T ss_conf 99799999999189---97-----99--9999999999651-----1568899999858----943999999---99899
Q ss_pred CCCCC
Q ss_conf 89643
Q 001432 211 GNIFS 215 (1079)
Q Consensus 211 GN~ft 215 (1079)
||.-+
T Consensus 74 G~~~t 78 (98)
T 3pe9_A 74 DAAST 78 (98)
T ss_dssp CCBCC
T ss_pred CCEEE
T ss_conf 99986
No 7
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=20.42 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCEEEEEEEEECCC-CCCCCEEEEEEECCCC-C----CCCCCCCEEECCCCCC-CEEEEEEEECCCC
Q ss_conf 774289999964288-6685424998728997-7----6789996221147887-5799999707889
Q 001432 43 LNSATFLFQVLVAGN-YNCTDCRISCKLDDGI-A----SDCGTWEVSYTGLHDG-NHTFEVCSYGSQG 103 (1079)
Q Consensus 43 ~tsAtF~F~v~~~~g-~~C~~csf~CkLDg~~-~----~dC~s~~vs~s~L~DG-~HTF~V~A~~~~G 103 (1079)
.++.+.....-...+ .+.....++|+-++.. + .++......+++|..| .+.|.|+|....|
T Consensus 19 ~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g 86 (197)
T 3lpw_A 19 KTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYG 86 (197)
T ss_dssp SSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEEECSSEEEECCCCTTCEEEEEEEEEETTE
T ss_pred CCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCEEEECCCCCCCEEEEEEEEECCCC
T ss_conf 99799997698657998535789999978998668952478722799838778988999999983754
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=19.47 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHH--HHHCCCHHHHHHHHCCCCCCCC-------EEEEEEEECCCCCC
Q ss_conf 99999999999998--8520000112232124311110-------02478872799855
Q 001432 706 SFLLLSLLLFLSVG--ITLGKLLQYKEVHQEGQRFHWY-------QEIVRVTLGPGKRG 755 (1079)
Q Consensus 706 ~~~llal~lfL~vg--i~~G~l~qYKEv~~~~~~~~wy-------~~l~r~~lG~g~~G 755 (1079)
+.+|+.++++|+.. +++-..-.|+++.+|-+...|. ++-..-+-.|.++|
T Consensus 20 gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~NPlyk~~ttt~~nP~~~~ 78 (79)
T 2knc_B 20 AILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNITYRG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHCSCCSCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999999999999999999863245678988268765766877688
No 9
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=18.95 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred CEEECCCC-CCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 62211478-8757999997078898764002686317982111058665765207999995145458
Q 001432 81 EVSYTGLH-DGNHTFEVCSYGSQGVGCSSHNWIVDTVPPTAYITASSSFTNAKNVSVNISFTEPCCS 146 (1079)
Q Consensus 81 ~vs~s~L~-DG~HTF~V~A~~~~G~~~AsysWTVDTtpPTa~Its~~~~Tna~nVTV~ItFSE~~tg 146 (1079)
....++|. .-...|.|+|....|.++.+-...+-|.+|...-...........-++.+++..|...
T Consensus 47 ~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~~~~~~~sv~l~W~~P~~~ 113 (232)
T 4go6_B 47 QLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVT 113 (232)
T ss_dssp --CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEEEEEETTEEEEEEECCSCC
T ss_pred EEEECCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCC
T ss_conf 8996999899989999999967876455253423526999999970169704899799999697788
No 10
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=1.00 E-value=1 Score=18.94 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEEE-CCCC--CCCCCEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 7887579999970-7889--8764002686317982111058665765207999995145458998
Q 001432 87 LHDGNHTFEVCSY-GSQG--VGCSSHNWIVDTVPPTAYITASSSFTNAKNVSVNISFTEPCCSRGG 149 (1079)
Q Consensus 87 L~DG~HTF~V~A~-~~~G--~~~AsysWTVDTtpPTa~Its~~~~Tna~nVTV~ItFSE~~tg~GG 149 (1079)
|.||..+|.|.+. +..+ .....+.-+||+++|+++....-...+.. |+..+.-.|.++
T Consensus 793 ~pdG~Y~~~v~a~~~~~~~~~q~~~~~v~VD~~~P~i~~~~~~~~~~~~-----~~~~~~~~~s~~ 853 (926)
T 1xf1_A 793 VANGTYTYRVRYTPISSGAKEQHTDFDVIVDNTTPEVATSATFSTEDRR-----LTLASKPKTSQP 853 (926)
T ss_dssp CCSEEEEEEEEEEESSTTCCCEEEEEEEEECCCCCBCCSCEEECTTTCE-----EEECSCCBCSSC
T ss_pred CCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCE-----EECCCCCCCCCC
T ss_conf 9884569999999788996257888889995869837635553688977-----801513568877
Done!