Query 001433
Match_columns 1079
No_of_seqs 539 out of 2943
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 00:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2E-136 4E-141 1238.5 69.9 988 1-1074 362-1380(1463)
2 PTZ00014 myosin-A; Provisional 100.0 3E-107 6E-112 994.5 36.9 416 1-416 396-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 8E-104 2E-108 938.3 40.6 457 1-463 301-758 (862)
4 KOG0161 Myosin class II heavy 100.0 3E-101 6E-106 978.9 60.4 624 1-653 382-1050(1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 4.2E-99 9E-104 912.5 35.0 374 1-374 301-674 (674)
6 KOG0164 Myosin class I heavy c 100.0 2.7E-97 6E-102 830.6 32.5 434 1-444 304-755 (1001)
7 cd01380 MYSc_type_V Myosin mot 100.0 7.3E-96 2E-100 889.7 34.3 369 1-370 299-691 (691)
8 cd01378 MYSc_type_I Myosin mot 100.0 1.1E-95 2E-100 886.0 34.5 369 1-370 295-674 (674)
9 cd01377 MYSc_type_II Myosin mo 100.0 1.4E-95 3E-100 887.5 34.4 370 1-370 308-693 (693)
10 cd01381 MYSc_type_VII Myosin m 100.0 1.2E-95 3E-100 883.6 33.1 370 1-370 295-671 (671)
11 cd01387 MYSc_type_XV Myosin mo 100.0 3.6E-95 8E-100 880.2 34.7 369 1-370 296-677 (677)
12 cd01383 MYSc_type_VIII Myosin 100.0 4.6E-95 1E-99 877.7 34.2 366 1-370 298-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 2.7E-94 5.8E-99 874.6 34.6 367 1-370 307-688 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 3.2E-94 6.9E-99 877.0 34.2 367 1-369 327-715 (717)
15 cd01379 MYSc_type_III Myosin m 100.0 1.4E-93 3E-98 861.7 34.4 347 1-370 302-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 5.8E-93 1.3E-97 867.0 34.8 371 1-371 303-677 (677)
17 cd00124 MYSc Myosin motor doma 100.0 4.8E-91 1E-95 853.1 34.4 370 1-370 296-679 (679)
18 KOG0162 Myosin class I heavy c 100.0 1.7E-91 3.6E-96 783.4 24.0 400 1-404 312-725 (1106)
19 cd01386 MYSc_type_XVIII Myosin 100.0 8.5E-90 1.8E-94 838.8 32.5 370 1-370 294-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 1.3E-85 2.8E-90 736.3 53.5 436 1-447 381-837 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 6.4E-86 1.4E-90 818.9 30.0 359 1-359 297-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 4.5E-52 9.7E-57 508.2 14.4 456 2-465 360-1008(1062)
23 KOG1892 Actin filament-binding 99.9 1.3E-26 2.9E-31 267.0 18.8 259 746-1073 543-811 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 2.7E-26 5.9E-31 215.8 4.5 98 974-1074 1-98 (105)
25 KOG0161 Myosin class II heavy 99.2 9.4E-09 2E-13 134.7 36.5 207 90-321 413-627 (1930)
26 KOG0160 Myosin class V heavy c 98.3 1.8E-06 3.9E-11 105.9 11.3 85 424-511 674-758 (862)
27 KOG0520 Uncharacterized conser 98.2 1.4E-06 3.1E-11 106.6 7.3 128 373-517 808-937 (975)
28 COG5022 Myosin heavy chain [Cy 98.1 0.00067 1.5E-08 86.4 26.8 88 424-511 746-834 (1463)
29 KOG0971 Microtubule-associated 98.0 0.0077 1.7E-07 72.7 31.9 65 520-584 289-356 (1243)
30 KOG0520 Uncharacterized conser 97.8 4.5E-05 9.8E-10 93.9 8.1 129 376-510 757-905 (975)
31 KOG1029 Endocytic adaptor prot 97.7 0.0066 1.4E-07 72.1 22.9 71 611-681 439-509 (1118)
32 PF09726 Macoilin: Transmembra 97.6 0.021 4.5E-07 71.0 27.7 32 565-596 543-574 (697)
33 PRK11637 AmiB activator; Provi 97.4 0.05 1.1E-06 64.8 26.2 64 621-684 189-252 (428)
34 KOG0996 Structural maintenance 97.4 0.41 9E-06 60.5 34.0 13 335-347 209-221 (1293)
35 PF12718 Tropomyosin_1: Tropom 97.4 0.036 7.8E-07 55.1 20.8 50 524-584 10-59 (143)
36 TIGR02169 SMC_prok_A chromosom 97.3 0.58 1.3E-05 63.3 37.9 14 972-985 1016-1029(1164)
37 PF09726 Macoilin: Transmembra 97.2 0.08 1.7E-06 65.9 26.2 26 662-687 626-651 (697)
38 TIGR02169 SMC_prok_A chromosom 97.2 0.48 1E-05 64.1 36.0 25 662-686 417-441 (1164)
39 KOG0250 DNA repair protein RAD 97.2 1.3 2.9E-05 56.1 35.9 75 612-686 390-464 (1074)
40 COG1579 Zn-ribbon protein, pos 97.2 0.15 3.3E-06 54.6 23.8 52 608-659 88-139 (239)
41 KOG1029 Endocytic adaptor prot 97.1 0.066 1.4E-06 64.0 22.5 71 613-683 434-504 (1118)
42 PRK11637 AmiB activator; Provi 97.1 0.16 3.5E-06 60.4 26.8 73 614-686 175-247 (428)
43 PRK04863 mukB cell division pr 97.1 0.51 1.1E-05 63.7 33.6 38 649-686 440-477 (1486)
44 KOG0164 Myosin class I heavy c 97.0 0.0044 9.6E-08 73.1 11.4 82 422-513 695-786 (1001)
45 PF00612 IQ: IQ calmodulin-bin 96.9 0.00084 1.8E-08 43.3 2.9 20 424-443 2-21 (21)
46 KOG1853 LIS1-interacting prote 96.9 0.33 7.1E-06 50.9 23.0 76 612-687 101-179 (333)
47 KOG0933 Structural maintenance 96.9 0.41 9E-06 59.5 27.1 48 91-150 121-169 (1174)
48 KOG4229 Myosin VII, myosin IXB 96.9 0.00057 1.2E-08 86.7 3.2 267 244-513 644-1008(1062)
49 TIGR02168 SMC_prok_B chromosom 96.9 2 4.4E-05 58.1 37.5 18 999-1016 1089-1106(1179)
50 TIGR02168 SMC_prok_B chromosom 96.9 0.46 1E-05 64.2 31.1 8 338-345 125-132 (1179)
51 KOG0996 Structural maintenance 96.8 1.5 3.2E-05 55.8 31.3 10 1066-1075 1152-1161(1293)
52 KOG0250 DNA repair protein RAD 96.8 2.8 6E-05 53.4 36.0 26 973-998 932-957 (1074)
53 COG1196 Smc Chromosome segrega 96.8 1.4 3.1E-05 59.2 34.0 15 293-307 501-515 (1163)
54 KOG0971 Microtubule-associated 96.8 2.5 5.3E-05 52.2 32.9 45 645-689 505-549 (1243)
55 KOG0933 Structural maintenance 96.7 1.8 3.9E-05 54.2 30.7 11 348-358 619-629 (1174)
56 PF14662 CCDC155: Coiled-coil 96.7 0.77 1.7E-05 47.0 23.2 29 653-681 160-188 (193)
57 PF07888 CALCOCO1: Calcium bin 96.7 0.24 5.2E-06 58.9 22.4 21 525-545 161-181 (546)
58 PRK02224 chromosome segregatio 96.6 0.14 3.1E-06 66.9 22.7 62 624-686 573-634 (880)
59 COG4942 Membrane-bound metallo 96.6 0.98 2.1E-05 52.1 26.1 42 641-682 207-248 (420)
60 COG1196 Smc Chromosome segrega 96.6 4.1 9E-05 54.9 36.5 13 973-985 1008-1020(1163)
61 PF00261 Tropomyosin: Tropomyo 96.6 0.69 1.5E-05 50.3 24.2 41 645-685 177-217 (237)
62 PF00261 Tropomyosin: Tropomyo 96.6 0.088 1.9E-06 57.3 16.9 21 560-580 36-56 (237)
63 KOG2128 Ras GTPase-activating 96.5 0.035 7.5E-07 71.0 14.6 91 428-518 540-646 (1401)
64 PF14662 CCDC155: Coiled-coil 96.4 1.1 2.4E-05 45.9 22.0 80 609-688 102-188 (193)
65 COG1579 Zn-ribbon protein, pos 96.4 0.55 1.2E-05 50.4 20.9 8 569-576 61-68 (239)
66 PRK02224 chromosome segregatio 96.3 1.8 4E-05 56.6 30.5 21 998-1018 780-804 (880)
67 PRK09039 hypothetical protein; 96.3 0.54 1.2E-05 54.0 22.4 30 523-552 48-77 (343)
68 PF00612 IQ: IQ calmodulin-bin 96.3 0.0052 1.1E-07 39.7 3.3 19 472-490 2-20 (21)
69 PF08317 Spc7: Spc7 kinetochor 96.3 0.81 1.8E-05 52.3 23.5 81 607-687 207-291 (325)
70 PHA02562 46 endonuclease subun 96.2 0.54 1.2E-05 58.1 23.4 26 608-633 298-323 (562)
71 KOG4643 Uncharacterized coiled 96.2 3.7 8E-05 51.5 28.8 72 608-679 263-336 (1195)
72 KOG2128 Ras GTPase-activating 96.2 0.074 1.6E-06 68.2 15.2 114 381-494 513-645 (1401)
73 PF12718 Tropomyosin_1: Tropom 96.1 1 2.2E-05 44.8 20.2 26 655-680 112-137 (143)
74 PF12128 DUF3584: Protein of u 96.1 9.7 0.00021 51.5 37.4 31 381-411 228-258 (1201)
75 KOG0163 Myosin class VI heavy 96.0 3.9 8.4E-05 49.6 26.8 58 428-494 779-836 (1259)
76 KOG0994 Extracellular matrix g 96.0 6.5 0.00014 50.0 29.5 32 654-685 1713-1744(1758)
77 PF15397 DUF4618: Domain of un 95.9 3.2 7E-05 45.1 24.1 34 656-689 191-224 (258)
78 PRK03918 chromosome segregatio 95.9 0.71 1.5E-05 60.4 23.6 34 651-684 666-699 (880)
79 KOG0980 Actin-binding protein 95.9 3.5 7.7E-05 51.0 26.7 11 1060-1070 934-944 (980)
80 PF15619 Lebercilin: Ciliary p 95.8 3 6.5E-05 43.7 23.1 68 611-681 120-187 (194)
81 KOG0977 Nuclear envelope prote 95.8 0.82 1.8E-05 54.6 20.5 77 609-685 106-182 (546)
82 KOG4673 Transcription factor T 95.7 6.7 0.00014 47.2 28.6 14 65-78 8-21 (961)
83 PRK04863 mukB cell division pr 95.7 1.8 4E-05 58.6 25.8 40 645-684 443-482 (1486)
84 KOG0980 Actin-binding protein 95.7 6.6 0.00014 48.8 27.8 18 247-264 200-217 (980)
85 smart00015 IQ Short calmodulin 95.7 0.0095 2.1E-07 40.7 2.5 21 423-443 3-23 (26)
86 KOG0982 Centrosomal protein Nu 95.6 2.7 5.9E-05 47.8 22.7 15 674-688 405-419 (502)
87 PF15066 CAGE1: Cancer-associa 95.6 2.6 5.7E-05 48.4 22.8 28 660-687 487-514 (527)
88 PHA02562 46 endonuclease subun 95.5 2.6 5.6E-05 52.2 25.4 19 619-637 302-320 (562)
89 KOG0977 Nuclear envelope prote 95.5 6.1 0.00013 47.5 26.5 71 616-686 296-370 (546)
90 KOG0976 Rho/Rac1-interacting s 95.5 5.7 0.00012 48.5 25.7 49 608-656 350-398 (1265)
91 KOG0995 Centromere-associated 95.5 7.9 0.00017 46.1 27.8 23 488-510 266-288 (581)
92 PF09755 DUF2046: Uncharacteri 95.4 3.6 7.7E-05 45.6 22.5 14 673-686 186-199 (310)
93 KOG0018 Structural maintenance 95.4 9.5 0.00021 48.6 28.2 35 425-459 212-246 (1141)
94 PF04849 HAP1_N: HAP1 N-termin 95.4 0.73 1.6E-05 51.0 17.0 9 677-685 295-303 (306)
95 KOG0995 Centromere-associated 95.3 5.7 0.00012 47.3 24.8 11 313-323 103-113 (581)
96 KOG0999 Microtubule-associated 95.3 1.4 3E-05 51.4 19.3 23 666-688 195-217 (772)
97 TIGR00606 rad50 rad50. This fa 95.3 2.6 5.5E-05 57.6 25.7 8 810-817 1157-1164(1311)
98 KOG4643 Uncharacterized coiled 95.2 2.8 6.2E-05 52.5 22.8 39 48-88 4-45 (1195)
99 PRK03918 chromosome segregatio 95.2 6.3 0.00014 51.7 28.5 17 996-1012 785-801 (880)
100 KOG1103 Predicted coiled-coil 95.1 6.2 0.00014 43.5 22.6 52 635-686 243-294 (561)
101 PF04849 HAP1_N: HAP1 N-termin 95.1 5.5 0.00012 44.3 22.8 72 615-686 226-297 (306)
102 smart00787 Spc7 Spc7 kinetocho 95.1 4.6 0.0001 45.6 22.8 75 613-687 208-286 (312)
103 COG3883 Uncharacterized protei 95.0 6.5 0.00014 42.8 22.7 24 522-545 39-62 (265)
104 PF12128 DUF3584: Protein of u 95.0 21 0.00045 48.4 38.0 27 429-455 228-254 (1201)
105 TIGR03185 DNA_S_dndD DNA sulfu 95.0 6.4 0.00014 49.6 26.6 42 643-684 427-468 (650)
106 PF00038 Filament: Intermediat 95.0 8.3 0.00018 43.7 31.3 36 520-555 67-102 (312)
107 PF06785 UPF0242: Uncharacteri 95.0 6.8 0.00015 43.3 22.3 79 608-686 133-222 (401)
108 PF15070 GOLGA2L5: Putative go 94.9 14 0.0003 45.9 30.5 14 945-958 572-585 (617)
109 KOG1853 LIS1-interacting prote 94.9 6.3 0.00014 41.7 22.5 26 662-687 161-186 (333)
110 PRK09039 hypothetical protein; 94.9 3.8 8.3E-05 47.1 22.0 14 532-545 78-91 (343)
111 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.8 1.7 3.7E-05 42.6 16.6 31 658-688 98-128 (132)
112 KOG0612 Rho-associated, coiled 94.8 18 0.00039 46.8 29.7 73 612-684 619-693 (1317)
113 KOG4360 Uncharacterized coiled 94.8 0.95 2.1E-05 52.4 16.4 76 611-686 228-303 (596)
114 COG4372 Uncharacterized protei 94.8 6.8 0.00015 44.1 22.2 17 563-579 140-156 (499)
115 PF10473 CENP-F_leu_zip: Leuci 94.8 4.6 9.9E-05 39.8 19.6 16 564-579 21-36 (140)
116 PF10174 Cast: RIM-binding pro 94.8 4.3 9.3E-05 51.3 23.6 37 558-594 334-370 (775)
117 TIGR00606 rad50 rad50. This fa 94.8 2.9 6.2E-05 57.1 24.2 17 526-542 848-864 (1311)
118 PF15619 Lebercilin: Ciliary p 94.7 6.5 0.00014 41.3 23.4 30 658-687 157-186 (194)
119 COG3883 Uncharacterized protei 94.6 8.2 0.00018 42.1 22.1 60 519-582 43-102 (265)
120 PF08317 Spc7: Spc7 kinetochor 94.6 4.7 0.0001 46.1 21.8 13 666-678 277-289 (325)
121 KOG0612 Rho-associated, coiled 94.6 4.8 0.0001 51.7 22.9 37 182-218 212-253 (1317)
122 PF05483 SCP-1: Synaptonemal c 94.4 9.3 0.0002 46.3 23.4 48 642-689 578-625 (786)
123 PF10481 CENP-F_N: Cenp-F N-te 94.3 1.2 2.7E-05 47.6 14.7 73 617-689 61-133 (307)
124 PF08614 ATG16: Autophagy prot 94.3 0.33 7.1E-06 51.1 10.8 77 610-686 103-179 (194)
125 KOG0978 E3 ubiquitin ligase in 94.3 19 0.0004 44.7 33.9 79 610-688 539-617 (698)
126 smart00015 IQ Short calmodulin 94.2 0.048 1E-06 37.2 2.8 20 471-490 3-22 (26)
127 PF10481 CENP-F_N: Cenp-F N-te 94.0 4 8.7E-05 43.8 17.7 28 660-687 164-191 (307)
128 KOG0994 Extracellular matrix g 93.9 13 0.00029 47.3 24.3 26 661-686 1713-1738(1758)
129 KOG0249 LAR-interacting protei 93.9 8 0.00017 46.9 21.7 20 995-1022 756-775 (916)
130 KOG1003 Actin filament-coating 93.8 9.2 0.0002 39.4 21.4 72 609-680 109-187 (205)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 7.5 0.00016 38.1 18.5 28 648-675 102-129 (132)
132 PF09730 BicD: Microtubule-ass 93.7 9 0.0002 47.8 22.9 78 610-687 98-178 (717)
133 PF05667 DUF812: Protein of un 93.7 5.2 0.00011 49.2 20.8 15 188-204 79-93 (594)
134 PF15070 GOLGA2L5: Putative go 93.6 6.3 0.00014 48.7 21.4 15 530-544 89-103 (617)
135 PF05701 WEMBL: Weak chloropla 93.6 10 0.00022 46.4 23.2 29 655-683 390-418 (522)
136 PF13870 DUF4201: Domain of un 93.6 10 0.00022 39.3 20.3 42 609-650 84-125 (177)
137 PF09789 DUF2353: Uncharacteri 93.6 15 0.00033 41.3 25.3 128 558-687 77-218 (319)
138 PTZ00014 myosin-A; Provisional 93.5 0.21 4.5E-06 63.5 8.7 41 472-512 778-818 (821)
139 PF13851 GAS: Growth-arrest sp 93.3 13 0.00028 39.4 24.1 77 610-686 94-171 (201)
140 PF07111 HCR: Alpha helical co 93.2 26 0.00057 42.9 25.1 24 663-686 240-263 (739)
141 smart00787 Spc7 Spc7 kinetocho 93.2 18 0.0004 40.9 24.2 53 634-686 208-260 (312)
142 PF04091 Sec15: Exocyst comple 93.1 0.85 1.8E-05 51.7 12.1 130 942-1073 175-308 (311)
143 TIGR01843 type_I_hlyD type I s 93.0 16 0.00035 43.2 23.6 24 663-686 244-267 (423)
144 KOG2991 Splicing regulator [RN 93.0 15 0.00032 39.2 24.5 55 632-686 252-306 (330)
145 KOG0964 Structural maintenance 93.0 16 0.00035 46.1 22.8 49 639-687 448-496 (1200)
146 PF04156 IncA: IncA protein; 92.9 3.6 7.9E-05 43.1 15.8 20 659-678 166-185 (191)
147 KOG0976 Rho/Rac1-interacting s 92.8 31 0.00067 42.5 29.5 30 608-637 378-407 (1265)
148 KOG0982 Centrosomal protein Nu 92.7 10 0.00022 43.4 19.2 30 661-690 406-435 (502)
149 PRK10884 SH3 domain-containing 92.7 1.5 3.2E-05 46.4 12.3 76 608-686 92-167 (206)
150 PF04437 RINT1_TIP1: RINT-1 / 92.6 2.9 6.3E-05 50.8 16.7 125 943-1073 352-491 (494)
151 KOG0963 Transcription factor/C 92.6 25 0.00053 42.6 23.1 28 659-686 286-313 (629)
152 TIGR02680 conserved hypothetic 92.5 20 0.00044 49.1 25.7 17 657-673 367-383 (1353)
153 PF10168 Nup88: Nuclear pore c 92.1 14 0.0003 46.8 21.7 29 613-641 636-664 (717)
154 PRK01156 chromosome segregatio 92.0 52 0.0011 43.3 36.3 63 948-1011 731-813 (895)
155 KOG0979 Structural maintenance 91.9 35 0.00075 43.6 24.1 29 946-974 835-864 (1072)
156 PF05667 DUF812: Protein of un 91.9 40 0.00087 41.7 31.7 126 561-686 441-592 (594)
157 KOG4360 Uncharacterized coiled 91.8 14 0.00031 43.2 19.3 76 611-686 221-296 (596)
158 COG4026 Uncharacterized protei 91.7 1.6 3.4E-05 45.2 10.6 36 611-646 144-179 (290)
159 PF09789 DUF2353: Uncharacteri 91.5 17 0.00036 41.0 19.3 82 609-690 79-172 (319)
160 PF05911 DUF869: Plant protein 91.5 19 0.00041 45.6 21.8 44 638-681 121-164 (769)
161 KOG2129 Uncharacterized conser 91.5 30 0.00065 39.5 22.0 23 615-637 252-274 (552)
162 PF08614 ATG16: Autophagy prot 91.3 2.6 5.6E-05 44.4 12.4 64 608-671 115-178 (194)
163 PF04111 APG6: Autophagy prote 91.3 3.2 7E-05 47.0 13.8 30 657-686 105-134 (314)
164 PF06785 UPF0242: Uncharacteri 91.2 12 0.00025 41.5 17.0 48 610-657 128-175 (401)
165 PF15254 CCDC14: Coiled-coil d 91.2 30 0.00064 42.9 21.9 34 614-647 492-525 (861)
166 PF09728 Taxilin: Myosin-like 91.0 32 0.00069 39.0 24.8 27 661-687 240-266 (309)
167 TIGR01843 type_I_hlyD type I s 91.0 25 0.00054 41.6 22.0 69 614-682 201-270 (423)
168 PF13514 AAA_27: AAA domain 90.9 74 0.0016 42.9 31.0 35 560-594 801-835 (1111)
169 KOG0964 Structural maintenance 90.9 57 0.0012 41.6 25.3 22 527-548 299-320 (1200)
170 TIGR01005 eps_transp_fam exopo 90.8 22 0.00048 45.7 22.7 16 567-582 237-252 (754)
171 PF04012 PspA_IM30: PspA/IM30 90.8 26 0.00057 37.5 20.0 76 610-685 99-185 (221)
172 PF14915 CCDC144C: CCDC144C pr 90.5 31 0.00068 38.0 30.4 40 649-688 198-237 (305)
173 TIGR02680 conserved hypothetic 90.5 88 0.0019 43.1 30.1 16 331-346 616-631 (1353)
174 PF10168 Nup88: Nuclear pore c 90.4 34 0.00075 43.3 22.8 20 185-204 244-263 (717)
175 KOG0804 Cytoplasmic Zn-finger 90.4 9.5 0.00021 44.0 16.0 17 666-682 429-445 (493)
176 PRK10884 SH3 domain-containing 90.3 2.8 6.1E-05 44.3 11.3 73 613-688 90-162 (206)
177 KOG0979 Structural maintenance 90.3 27 0.00059 44.4 21.1 11 750-760 486-496 (1072)
178 PF04111 APG6: Autophagy prote 90.2 3.7 7.9E-05 46.6 13.1 75 611-685 45-119 (314)
179 COG4372 Uncharacterized protei 90.2 38 0.00082 38.4 28.5 71 610-680 211-281 (499)
180 TIGR03007 pepcterm_ChnLen poly 90.1 30 0.00064 42.2 22.0 28 659-686 318-345 (498)
181 COG1340 Uncharacterized archae 89.8 37 0.0008 37.7 24.1 22 612-633 161-182 (294)
182 KOG4674 Uncharacterized conser 89.7 1E+02 0.0022 42.6 32.0 31 656-686 856-886 (1822)
183 PRK04778 septation ring format 89.6 62 0.0014 40.1 32.0 24 649-672 315-338 (569)
184 PF09730 BicD: Microtubule-ass 89.6 33 0.00072 43.0 21.3 74 609-685 359-432 (717)
185 COG2433 Uncharacterized conser 89.5 3.9 8.6E-05 48.8 12.6 77 610-686 430-509 (652)
186 COG5185 HEC1 Protein involved 89.4 49 0.0011 38.5 24.9 24 487-510 301-324 (622)
187 KOG0978 E3 ubiquitin ligase in 89.2 68 0.0015 40.0 30.7 81 609-689 524-604 (698)
188 PLN02939 transferase, transfer 89.1 41 0.00089 43.6 22.1 31 792-823 593-624 (977)
189 KOG0999 Microtubule-associated 88.9 57 0.0012 38.7 26.8 16 955-970 621-636 (772)
190 PF08826 DMPK_coil: DMPK coile 88.8 6.6 0.00014 32.8 10.0 43 636-678 17-59 (61)
191 KOG1003 Actin filament-coating 88.7 32 0.00069 35.6 22.9 107 570-683 91-197 (205)
192 COG2433 Uncharacterized conser 88.7 8 0.00017 46.4 14.4 16 131-147 59-74 (652)
193 PF10174 Cast: RIM-binding pro 88.7 82 0.0018 40.2 31.4 15 246-260 152-166 (775)
194 PF10498 IFT57: Intra-flagella 88.6 21 0.00046 41.2 17.7 15 569-583 236-250 (359)
195 PRK04778 septation ring format 88.5 74 0.0016 39.5 32.1 6 740-745 445-450 (569)
196 PF14197 Cep57_CLD_2: Centroso 88.4 5.2 0.00011 34.5 9.5 61 613-673 2-62 (69)
197 PRK11281 hypothetical protein; 88.4 14 0.0003 48.9 17.9 26 608-633 191-216 (1113)
198 KOG1899 LAR transmembrane tyro 88.1 13 0.00028 44.5 15.4 22 1001-1022 707-728 (861)
199 PF09755 DUF2046: Uncharacteri 88.1 49 0.0011 37.0 27.3 61 622-682 141-202 (310)
200 PF01576 Myosin_tail_1: Myosin 88.0 0.15 3.3E-06 65.6 0.0 49 613-661 318-366 (859)
201 PF10186 Atg14: UV radiation r 88.0 48 0.001 37.1 20.3 23 663-685 124-146 (302)
202 KOG0946 ER-Golgi vesicle-tethe 87.9 60 0.0013 40.5 21.1 28 660-687 794-821 (970)
203 PF14197 Cep57_CLD_2: Centroso 87.9 7.9 0.00017 33.4 10.3 67 620-686 2-68 (69)
204 KOG4673 Transcription factor T 87.9 74 0.0016 38.8 29.2 15 738-752 811-825 (961)
205 PRK10929 putative mechanosensi 87.8 21 0.00046 47.2 18.9 26 608-633 172-197 (1109)
206 COG4026 Uncharacterized protei 87.8 6.3 0.00014 41.0 11.2 60 626-685 138-197 (290)
207 KOG4674 Uncharacterized conser 87.6 1.3E+02 0.0029 41.5 37.5 71 526-596 764-834 (1822)
208 PRK10698 phage shock protein P 87.6 45 0.00097 35.9 23.2 76 608-683 98-184 (222)
209 PF10146 zf-C4H2: Zinc finger- 87.5 24 0.00053 38.0 16.2 45 643-687 59-103 (230)
210 PF01576 Myosin_tail_1: Myosin 87.3 0.18 3.8E-06 65.0 0.0 78 609-686 426-503 (859)
211 KOG4593 Mitotic checkpoint pro 87.3 83 0.0018 38.8 27.7 23 470-492 85-107 (716)
212 PF10186 Atg14: UV radiation r 87.3 28 0.00061 39.0 18.0 11 949-959 286-296 (302)
213 COG1382 GimC Prefoldin, chaper 87.3 16 0.00035 34.8 12.9 75 611-685 22-111 (119)
214 KOG1962 B-cell receptor-associ 86.8 4.7 0.0001 42.5 10.0 39 650-688 171-209 (216)
215 COG0497 RecN ATPase involved i 86.7 76 0.0016 38.7 21.2 31 657-687 341-371 (557)
216 COG3074 Uncharacterized protei 86.7 6.5 0.00014 33.1 8.6 50 638-687 12-61 (79)
217 PF00038 Filament: Intermediat 86.4 64 0.0014 36.5 33.0 26 657-682 261-286 (312)
218 PF05010 TACC: Transforming ac 86.3 49 0.0011 35.1 25.5 39 647-685 157-195 (207)
219 PF13851 GAS: Growth-arrest sp 86.2 49 0.0011 35.0 22.0 75 611-685 88-163 (201)
220 KOG0804 Cytoplasmic Zn-finger 86.2 49 0.0011 38.5 18.2 17 662-678 432-448 (493)
221 PF12777 MT: Microtubule-bindi 86.0 66 0.0014 37.1 20.0 50 637-686 221-270 (344)
222 PF13870 DUF4201: Domain of un 85.8 47 0.001 34.3 19.1 72 616-687 63-134 (177)
223 PF09304 Cortex-I_coil: Cortex 85.6 31 0.00067 32.2 14.2 28 613-640 48-75 (107)
224 KOG0946 ER-Golgi vesicle-tethe 85.4 1.1E+02 0.0024 38.3 24.6 34 654-687 851-884 (970)
225 COG5185 HEC1 Protein involved 85.4 82 0.0018 36.8 21.2 17 947-963 602-618 (622)
226 PF11559 ADIP: Afadin- and alp 85.3 15 0.00033 36.8 12.8 13 673-685 134-146 (151)
227 PF15397 DUF4618: Domain of un 85.0 64 0.0014 35.3 24.7 27 661-687 189-215 (258)
228 TIGR00634 recN DNA repair prot 85.0 78 0.0017 39.2 21.4 30 658-687 346-375 (563)
229 PF12325 TMF_TATA_bd: TATA ele 84.8 39 0.00084 32.6 15.9 13 565-577 21-33 (120)
230 KOG0963 Transcription factor/C 84.4 1.1E+02 0.0023 37.4 29.3 29 660-688 237-265 (629)
231 PF11559 ADIP: Afadin- and alp 84.3 18 0.0004 36.2 12.9 19 618-636 68-86 (151)
232 PF10146 zf-C4H2: Zinc finger- 84.2 16 0.00034 39.4 12.8 63 611-680 41-103 (230)
233 PF10212 TTKRSYEDQ: Predicted 84.1 95 0.0021 37.2 20.0 69 618-686 415-483 (518)
234 KOG1937 Uncharacterized conser 83.9 94 0.002 36.2 22.4 27 661-687 392-418 (521)
235 PF07889 DUF1664: Protein of u 83.7 15 0.00032 35.7 11.0 65 614-678 59-123 (126)
236 KOG1937 Uncharacterized conser 83.6 96 0.0021 36.2 25.0 80 518-597 290-375 (521)
237 PF09738 DUF2051: Double stran 83.5 25 0.00053 39.6 14.4 66 613-678 102-167 (302)
238 KOG0243 Kinesin-like protein [ 83.4 1.1E+02 0.0023 39.9 21.2 39 247-285 163-217 (1041)
239 KOG4809 Rab6 GTPase-interactin 83.2 83 0.0018 37.5 18.5 22 560-581 331-352 (654)
240 PF13514 AAA_27: AAA domain 83.0 1.2E+02 0.0025 41.1 23.3 80 607-686 240-324 (1111)
241 PF10205 KLRAQ: Predicted coil 83.0 22 0.00047 33.0 11.2 71 614-684 3-73 (102)
242 PRK10361 DNA recombination pro 83.0 1.1E+02 0.0024 36.6 27.1 16 671-686 171-186 (475)
243 PRK11281 hypothetical protein; 83.0 45 0.00098 44.3 18.6 22 614-635 126-147 (1113)
244 KOG1962 B-cell receptor-associ 83.0 5.5 0.00012 42.0 8.5 62 614-675 149-210 (216)
245 KOG0249 LAR-interacting protei 82.6 84 0.0018 38.7 18.7 24 613-636 234-257 (916)
246 PF05911 DUF869: Plant protein 82.6 1.5E+02 0.0033 37.8 24.8 79 608-686 119-204 (769)
247 KOG0018 Structural maintenance 82.5 1.7E+02 0.0036 38.1 32.3 31 657-687 443-473 (1141)
248 KOG4302 Microtubule-associated 82.4 81 0.0017 39.2 19.2 80 518-597 58-140 (660)
249 COG4942 Membrane-bound metallo 82.2 1.1E+02 0.0024 35.9 29.9 23 560-582 87-109 (420)
250 PF13863 DUF4200: Domain of un 82.0 50 0.0011 31.8 16.7 67 620-686 43-109 (126)
251 KOG4593 Mitotic checkpoint pro 81.9 1.4E+02 0.0031 36.9 32.2 26 520-545 150-175 (716)
252 PF08826 DMPK_coil: DMPK coile 81.7 23 0.00051 29.7 10.0 31 654-684 28-58 (61)
253 KOG3684 Ca2+-activated K+ chan 81.7 58 0.0013 38.1 16.5 37 454-490 347-383 (489)
254 COG4477 EzrA Negative regulato 81.6 1.3E+02 0.0027 36.2 22.7 13 350-362 57-69 (570)
255 PF05622 HOOK: HOOK protein; 81.6 0.45 9.9E-06 60.4 0.0 8 313-320 129-136 (713)
256 cd00632 Prefoldin_beta Prefold 81.1 32 0.0007 32.2 12.3 36 649-684 68-103 (105)
257 PF05622 HOOK: HOOK protein; 80.9 0.5 1.1E-05 60.1 0.0 24 659-682 399-422 (713)
258 KOG1899 LAR transmembrane tyro 80.9 1.1E+02 0.0025 36.9 18.7 18 564-581 178-195 (861)
259 TIGR03319 YmdA_YtgF conserved 80.9 77 0.0017 38.7 18.5 114 562-687 20-133 (514)
260 PF03962 Mnd1: Mnd1 family; I 80.8 15 0.00033 38.4 10.9 76 611-687 71-150 (188)
261 KOG4603 TBP-1 interacting prot 80.6 15 0.00033 36.7 10.0 61 609-676 79-141 (201)
262 PF14915 CCDC144C: CCDC144C pr 80.2 1E+02 0.0022 34.2 25.8 110 564-680 183-300 (305)
263 PF06818 Fez1: Fez1; InterPro 79.9 39 0.00084 35.4 13.2 21 666-686 132-152 (202)
264 PF15290 Syntaphilin: Golgi-lo 79.8 67 0.0015 35.1 15.2 27 611-637 119-145 (305)
265 PF11932 DUF3450: Protein of u 79.6 23 0.00051 38.8 12.6 67 610-676 43-109 (251)
266 PRK15422 septal ring assembly 79.5 30 0.00065 30.3 10.2 19 618-636 20-38 (79)
267 PF07106 TBPIP: Tat binding pr 79.5 8.7 0.00019 39.4 8.6 67 608-686 71-137 (169)
268 PF07106 TBPIP: Tat binding pr 79.5 8.3 0.00018 39.6 8.5 23 611-633 81-103 (169)
269 TIGR02977 phageshock_pspA phag 79.4 94 0.002 33.3 24.3 75 608-682 98-183 (219)
270 KOG0962 DNA repair protein RAD 79.3 2.4E+02 0.0051 37.9 24.3 38 610-647 298-335 (1294)
271 KOG0243 Kinesin-like protein [ 79.1 87 0.0019 40.7 18.4 21 85-106 113-133 (1041)
272 PRK00106 hypothetical protein; 78.9 1.7E+02 0.0036 35.9 20.2 16 946-961 451-466 (535)
273 KOG2891 Surface glycoprotein [ 77.5 1.1E+02 0.0024 33.1 18.4 17 304-320 122-138 (445)
274 PRK10869 recombination and rep 77.3 1.9E+02 0.0041 35.7 20.8 31 657-687 340-370 (553)
275 KOG4403 Cell surface glycoprot 77.0 1.5E+02 0.0033 34.3 20.9 20 564-583 306-325 (575)
276 PRK04406 hypothetical protein; 76.9 18 0.00038 31.8 8.3 13 628-640 9-21 (75)
277 PRK15422 septal ring assembly 76.7 51 0.0011 29.0 10.7 9 677-685 51-59 (79)
278 TIGR03007 pepcterm_ChnLen poly 76.4 1.9E+02 0.0041 35.2 25.2 26 657-682 354-379 (498)
279 PF15456 Uds1: Up-regulated Du 76.3 44 0.00095 32.4 11.7 80 607-687 20-110 (124)
280 PF15188 CCDC-167: Coiled-coil 76.0 10 0.00022 34.0 6.6 62 616-688 5-66 (85)
281 KOG0239 Kinesin (KAR3 subfamil 75.6 1.1E+02 0.0024 38.5 18.0 13 770-782 414-426 (670)
282 PF04102 SlyX: SlyX; InterPro 75.2 15 0.00033 31.6 7.5 13 673-685 33-45 (69)
283 PF10226 DUF2216: Uncharacteri 75.2 1.1E+02 0.0023 31.7 16.3 77 612-688 58-138 (195)
284 TIGR02338 gimC_beta prefoldin, 75.1 63 0.0014 30.6 12.4 32 651-682 74-105 (110)
285 KOG0288 WD40 repeat protein Ti 74.8 81 0.0018 36.4 14.8 15 815-829 243-257 (459)
286 PF09738 DUF2051: Double stran 74.8 72 0.0016 36.0 14.6 66 611-676 107-172 (302)
287 PF06818 Fez1: Fez1; InterPro 74.6 58 0.0013 34.2 12.7 72 617-688 32-103 (202)
288 PF10267 Tmemb_cc2: Predicted 74.5 95 0.0021 36.3 15.9 18 661-678 301-318 (395)
289 PF01920 Prefoldin_2: Prefoldi 74.4 67 0.0015 29.7 12.5 26 660-685 71-96 (106)
290 PF15254 CCDC14: Coiled-coil d 74.0 2.4E+02 0.0053 35.4 26.6 56 525-580 391-447 (861)
291 PRK09343 prefoldin subunit bet 73.6 84 0.0018 30.3 13.0 41 647-687 74-114 (121)
292 PF10211 Ax_dynein_light: Axon 73.0 1.3E+02 0.0027 31.6 15.6 9 500-508 77-85 (189)
293 COG0419 SbcC ATPase involved i 72.8 3.2E+02 0.0069 36.1 29.5 38 950-987 740-777 (908)
294 KOG2751 Beclin-like protein [S 72.7 1.1E+02 0.0024 35.6 15.4 30 659-688 240-269 (447)
295 PF05701 WEMBL: Weak chloropla 72.7 2.4E+02 0.0052 34.6 30.3 8 614-621 342-349 (522)
296 PF10211 Ax_dynein_light: Axon 72.6 1.2E+02 0.0027 31.7 15.0 26 520-545 126-151 (189)
297 KOG2264 Exostosin EXT1L [Signa 72.5 28 0.0006 41.2 10.8 60 629-688 92-151 (907)
298 PF05557 MAD: Mitotic checkpoi 72.3 1.2 2.6E-05 56.8 0.0 8 1014-1021 697-704 (722)
299 PF01920 Prefoldin_2: Prefoldi 72.3 58 0.0013 30.1 11.5 36 647-682 65-100 (106)
300 PF13166 AAA_13: AAA domain 72.2 2.8E+02 0.0062 35.3 23.9 34 654-687 420-453 (712)
301 KOG0239 Kinesin (KAR3 subfamil 72.1 96 0.0021 39.0 16.3 15 768-782 419-433 (670)
302 COG1382 GimC Prefoldin, chaper 71.9 77 0.0017 30.4 11.8 79 609-687 13-106 (119)
303 KOG4302 Microtubule-associated 71.8 1.2E+02 0.0026 37.8 16.5 30 658-687 226-255 (660)
304 PF10498 IFT57: Intra-flagella 71.6 1.5E+02 0.0032 34.4 16.5 9 502-510 216-224 (359)
305 TIGR01000 bacteriocin_acc bact 70.9 2.4E+02 0.0052 33.9 24.3 25 662-686 288-312 (457)
306 PRK02119 hypothetical protein; 70.8 27 0.00058 30.5 7.9 7 631-637 10-16 (73)
307 TIGR01000 bacteriocin_acc bact 70.5 2.4E+02 0.0053 33.8 25.1 28 655-682 288-315 (457)
308 PF05529 Bap31: B-cell recepto 70.3 33 0.00072 35.9 10.3 25 663-687 159-183 (192)
309 PF05266 DUF724: Protein of un 70.1 71 0.0015 33.4 12.4 19 666-684 160-178 (190)
310 PRK13729 conjugal transfer pil 70.1 17 0.00036 43.0 8.5 13 945-957 445-457 (475)
311 PF10205 KLRAQ: Predicted coil 70.0 86 0.0019 29.2 11.3 64 623-686 5-68 (102)
312 PF07989 Microtub_assoc: Micro 70.0 40 0.00086 29.6 8.8 26 608-633 6-31 (75)
313 PF05266 DUF724: Protein of un 69.8 49 0.0011 34.7 11.2 23 657-679 158-180 (190)
314 KOG1103 Predicted coiled-coil 69.8 1.9E+02 0.0042 32.4 22.6 19 530-548 141-159 (561)
315 PF08172 CASP_C: CASP C termin 69.8 46 0.001 36.4 11.4 35 652-686 94-128 (248)
316 PF14988 DUF4515: Domain of un 69.7 1.6E+02 0.0034 31.3 23.9 32 655-686 167-198 (206)
317 PF03962 Mnd1: Mnd1 family; I 69.6 1.2E+02 0.0026 31.7 14.1 22 524-545 72-93 (188)
318 TIGR02338 gimC_beta prefoldin, 69.3 82 0.0018 29.8 11.8 32 655-686 71-102 (110)
319 PF06008 Laminin_I: Laminin Do 69.1 1.9E+02 0.0041 32.0 22.6 62 614-675 183-244 (264)
320 PF04102 SlyX: SlyX; InterPro 69.1 24 0.00052 30.4 7.3 23 663-685 30-52 (69)
321 PF09728 Taxilin: Myosin-like 68.4 2.2E+02 0.0047 32.4 37.7 79 607-685 221-299 (309)
322 PF10267 Tmemb_cc2: Predicted 68.3 1.8E+02 0.0038 34.1 16.3 20 522-541 220-239 (395)
323 PRK00846 hypothetical protein; 68.2 31 0.00068 30.4 7.8 21 663-683 39-59 (77)
324 PF15450 DUF4631: Domain of un 67.9 2.7E+02 0.0059 33.4 29.5 25 521-545 258-282 (531)
325 PLN03188 kinesin-12 family pro 67.9 4.2E+02 0.0091 35.5 31.3 17 120-137 232-248 (1320)
326 PF02403 Seryl_tRNA_N: Seryl-t 67.9 43 0.00094 31.4 9.6 73 608-684 28-100 (108)
327 KOG4807 F-actin binding protei 67.6 2.3E+02 0.005 32.4 22.5 26 661-686 515-540 (593)
328 KOG0993 Rab5 GTPase effector R 67.6 2.4E+02 0.0051 32.6 16.7 153 531-683 9-187 (542)
329 TIGR03752 conj_TIGR03752 integ 67.5 52 0.0011 38.9 11.8 78 609-686 59-137 (472)
330 COG1842 PspA Phage shock prote 67.3 1.9E+02 0.004 31.3 20.1 13 567-579 59-71 (225)
331 PF15294 Leu_zip: Leucine zipp 67.3 2.1E+02 0.0045 31.8 15.6 135 521-676 132-278 (278)
332 KOG4809 Rab6 GTPase-interactin 67.2 2.8E+02 0.0061 33.3 21.4 22 803-824 619-640 (654)
333 PF05837 CENP-H: Centromere pr 67.0 48 0.001 31.2 9.5 70 617-687 4-73 (106)
334 PLN02939 transferase, transfer 67.0 4E+02 0.0087 35.0 21.1 18 561-578 234-251 (977)
335 PRK13729 conjugal transfer pil 67.0 22 0.00049 42.0 8.7 13 631-643 77-89 (475)
336 smart00338 BRLZ basic region l 66.6 62 0.0013 27.3 9.3 41 648-688 23-63 (65)
337 KOG2751 Beclin-like protein [S 66.3 2.1E+02 0.0046 33.4 15.9 20 663-682 237-256 (447)
338 PF14389 Lzipper-MIP1: Leucine 66.1 64 0.0014 29.3 9.7 57 526-582 6-76 (88)
339 PF00170 bZIP_1: bZIP transcri 66.0 64 0.0014 27.1 9.3 36 652-687 27-62 (64)
340 PF05557 MAD: Mitotic checkpoi 65.9 5.9 0.00013 50.6 4.3 27 656-682 508-534 (722)
341 PRK04325 hypothetical protein; 65.8 40 0.00086 29.5 8.0 6 632-637 11-16 (74)
342 PRK10246 exonuclease subunit S 65.7 4.6E+02 0.01 35.2 24.3 24 23-46 34-57 (1047)
343 PF04012 PspA_IM30: PspA/IM30 65.3 2E+02 0.0042 30.8 19.8 22 561-582 52-73 (221)
344 PF10046 BLOC1_2: Biogenesis o 64.9 1.1E+02 0.0023 28.5 11.3 32 651-682 66-97 (99)
345 PF05010 TACC: Transforming ac 64.9 2E+02 0.0043 30.6 24.7 24 661-684 164-187 (207)
346 KOG3433 Protein involved in me 64.8 70 0.0015 32.7 10.4 66 609-674 74-139 (203)
347 COG1730 GIM5 Predicted prefold 64.8 1.5E+02 0.0032 29.6 12.7 31 656-686 106-136 (145)
348 KOG4787 Uncharacterized conser 64.8 1.9E+02 0.0041 34.9 15.3 26 661-686 518-543 (852)
349 PF07851 TMPIT: TMPIT-like pro 64.7 85 0.0018 35.7 12.4 76 610-685 5-81 (330)
350 KOG2129 Uncharacterized conser 64.7 2.7E+02 0.0059 32.2 23.2 26 608-633 252-277 (552)
351 PTZ00121 MAEBL; Provisional 64.4 5E+02 0.011 35.2 33.1 45 949-993 1980-2031(2084)
352 KOG4427 E3 ubiquitin protein l 64.4 6.9 0.00015 47.6 4.0 23 421-443 28-50 (1096)
353 PF15066 CAGE1: Cancer-associa 64.4 3E+02 0.0064 32.5 25.3 24 642-665 483-506 (527)
354 TIGR03495 phage_LysB phage lys 64.3 1.1E+02 0.0023 30.2 11.5 31 656-686 66-96 (135)
355 COG1842 PspA Phage shock prote 64.1 2.1E+02 0.0046 30.8 22.3 30 516-545 40-69 (225)
356 PF01486 K-box: K-box region; 63.8 96 0.0021 28.7 10.9 79 607-687 10-97 (100)
357 TIGR01005 eps_transp_fam exopo 63.8 4.2E+02 0.0091 34.1 29.3 29 657-685 375-403 (754)
358 PF05384 DegS: Sensor protein 63.8 1.7E+02 0.0038 29.7 21.2 22 558-579 25-46 (159)
359 PF11180 DUF2968: Protein of u 63.7 1.8E+02 0.0039 30.3 13.3 36 653-688 149-184 (192)
360 PF12777 MT: Microtubule-bindi 63.3 2.8E+02 0.0061 31.9 20.7 25 513-537 7-31 (344)
361 KOG4001 Axonemal dynein light 63.2 99 0.0022 32.0 11.3 58 520-577 191-252 (259)
362 PF09731 Mitofilin: Mitochondr 63.0 3.8E+02 0.0082 33.3 22.5 7 769-775 464-470 (582)
363 TIGR00634 recN DNA repair prot 62.9 3.8E+02 0.0082 33.2 19.7 18 624-641 323-340 (563)
364 PF10458 Val_tRNA-synt_C: Valy 62.8 21 0.00046 30.4 5.8 18 658-675 46-63 (66)
365 PF05335 DUF745: Protein of un 62.6 2E+02 0.0044 30.0 16.0 57 616-672 109-165 (188)
366 PF03148 Tektin: Tektin family 62.6 3.1E+02 0.0067 32.2 26.5 166 506-681 129-368 (384)
367 PF10234 Cluap1: Clusterin-ass 62.5 2.5E+02 0.0054 31.1 16.8 47 611-657 171-217 (267)
368 PF13094 CENP-Q: CENP-Q, a CEN 62.1 57 0.0012 33.0 9.9 36 611-646 22-57 (160)
369 PRK03947 prefoldin subunit alp 62.1 1.5E+02 0.0031 29.3 12.5 17 563-579 9-25 (140)
370 COG2900 SlyX Uncharacterized p 61.8 54 0.0012 28.3 7.7 34 655-688 26-59 (72)
371 PF05700 BCAS2: Breast carcino 61.6 99 0.0022 33.2 12.0 35 653-687 177-211 (221)
372 KOG2991 Splicing regulator [RN 61.3 2.4E+02 0.0052 30.5 22.1 64 624-687 237-300 (330)
373 KOG4005 Transcription factor X 61.0 1.4E+02 0.003 31.8 12.0 17 525-541 87-103 (292)
374 PF07798 DUF1640: Protein of u 60.9 2.1E+02 0.0045 29.6 15.9 16 672-687 138-153 (177)
375 PRK03947 prefoldin subunit alp 60.7 1.3E+02 0.0028 29.7 11.9 30 655-684 105-134 (140)
376 PRK00846 hypothetical protein; 60.6 79 0.0017 27.9 8.8 35 652-686 21-55 (77)
377 PF10805 DUF2730: Protein of u 60.3 77 0.0017 29.8 9.6 23 657-679 71-93 (106)
378 KOG2685 Cystoskeletal protein 60.1 3.3E+02 0.0073 31.7 24.4 35 503-541 84-118 (421)
379 PF12761 End3: Actin cytoskele 59.8 89 0.0019 32.7 10.5 33 654-686 163-195 (195)
380 PF10234 Cluap1: Clusterin-ass 59.6 2.7E+02 0.0058 30.9 14.8 13 304-316 3-15 (267)
381 PRK15178 Vi polysaccharide exp 59.2 3.6E+02 0.0079 32.1 16.8 12 534-545 229-240 (434)
382 PLN03188 kinesin-12 family pro 59.0 5.9E+02 0.013 34.2 20.8 17 613-629 1177-1193(1320)
383 TIGR03752 conj_TIGR03752 integ 59.0 78 0.0017 37.5 11.2 69 610-684 74-142 (472)
384 PF07393 Sec10: Exocyst comple 58.1 2.2E+02 0.0048 36.4 16.4 168 891-1074 528-698 (710)
385 PF07798 DUF1640: Protein of u 58.1 2.3E+02 0.005 29.2 17.9 27 558-584 71-97 (177)
386 PF10224 DUF2205: Predicted co 58.0 49 0.0011 29.4 7.2 40 647-686 19-58 (80)
387 PF10212 TTKRSYEDQ: Predicted 57.8 4.1E+02 0.009 32.1 21.7 25 661-685 490-514 (518)
388 PF00170 bZIP_1: bZIP transcri 57.7 1.1E+02 0.0024 25.7 9.3 39 644-682 26-64 (64)
389 PF01166 TSC22: TSC-22/dip/bun 57.5 16 0.00036 29.9 3.8 31 658-688 14-44 (59)
390 PF05262 Borrelia_P83: Borreli 56.9 4.3E+02 0.0093 32.0 19.3 7 352-358 152-158 (489)
391 PRK00409 recombination and DNA 56.9 2.2E+02 0.0048 36.8 15.9 17 350-366 367-384 (782)
392 PF06428 Sec2p: GDP/GTP exchan 56.6 12 0.00027 34.7 3.4 71 610-687 9-80 (100)
393 PF12240 Angiomotin_C: Angiomo 56.5 2.6E+02 0.0057 29.4 18.3 41 650-690 128-168 (205)
394 PF07058 Myosin_HC-like: Myosi 56.1 3.3E+02 0.0071 30.4 15.8 19 558-576 33-51 (351)
395 PF02403 Seryl_tRNA_N: Seryl-t 56.1 97 0.0021 29.0 9.6 26 661-686 70-95 (108)
396 PF12072 DUF3552: Domain of un 55.6 2.7E+02 0.006 29.3 18.5 9 674-682 122-130 (201)
397 TIGR02231 conserved hypothetic 55.3 1.1E+02 0.0025 37.4 12.7 32 608-639 70-101 (525)
398 TIGR01069 mutS2 MutS2 family p 55.0 1.7E+02 0.0037 37.7 14.5 11 196-206 220-230 (771)
399 PF05769 DUF837: Protein of un 54.6 2.7E+02 0.0059 29.0 22.9 23 665-687 153-175 (181)
400 PRK09841 cryptic autophosphory 54.5 5.8E+02 0.013 32.8 20.9 15 660-674 372-386 (726)
401 PF08172 CASP_C: CASP C termin 54.3 1.6E+02 0.0034 32.3 12.0 21 610-630 80-100 (248)
402 KOG4603 TBP-1 interacting prot 54.1 1.2E+02 0.0025 30.8 9.8 58 628-685 84-143 (201)
403 KOG4677 Golgi integral membran 53.8 4.3E+02 0.0093 31.1 26.9 49 497-545 295-347 (554)
404 PF07989 Microtub_assoc: Micro 53.8 1.5E+02 0.0033 26.0 9.6 22 617-638 8-29 (75)
405 PF13863 DUF4200: Domain of un 53.7 2.1E+02 0.0046 27.4 16.2 26 652-677 82-107 (126)
406 KOG2077 JNK/SAPK-associated pr 53.7 1E+02 0.0023 36.8 10.9 42 646-687 338-379 (832)
407 PF04880 NUDE_C: NUDE protein, 53.6 21 0.00046 36.3 4.8 45 633-681 3-47 (166)
408 PF09403 FadA: Adhesion protei 53.3 2.3E+02 0.0049 27.7 15.2 15 668-682 103-117 (126)
409 PRK00409 recombination and DNA 53.2 4.2E+02 0.0092 34.3 17.6 10 196-205 225-234 (782)
410 KOG0942 E3 ubiquitin protein l 53.1 1.1E+02 0.0024 38.9 11.5 32 466-497 24-55 (1001)
411 COG1730 GIM5 Predicted prefold 53.0 2.5E+02 0.0054 28.1 14.1 35 610-644 95-129 (145)
412 KOG0288 WD40 repeat protein Ti 52.9 4.3E+02 0.0093 30.8 17.3 14 532-545 10-23 (459)
413 KOG4005 Transcription factor X 52.8 2E+02 0.0044 30.6 11.7 53 635-687 95-147 (292)
414 PF06156 DUF972: Protein of un 52.8 86 0.0019 29.6 8.4 26 661-686 25-50 (107)
415 PF07058 Myosin_HC-like: Myosi 52.8 1.3E+02 0.0029 33.2 10.8 73 614-686 5-87 (351)
416 PF14389 Lzipper-MIP1: Leucine 52.6 49 0.0011 30.0 6.6 29 659-687 55-83 (88)
417 PRK05431 seryl-tRNA synthetase 51.9 73 0.0016 37.9 9.8 75 608-686 27-101 (425)
418 PF15290 Syntaphilin: Golgi-lo 51.9 2.9E+02 0.0064 30.4 13.1 7 617-623 157-163 (305)
419 PF02994 Transposase_22: L1 tr 51.6 29 0.00063 40.4 6.3 15 670-684 170-184 (370)
420 PF06156 DUF972: Protein of un 51.0 75 0.0016 30.0 7.7 15 662-676 40-54 (107)
421 PF05700 BCAS2: Breast carcino 50.9 3.4E+02 0.0075 29.1 17.0 77 610-686 137-217 (221)
422 COG0419 SbcC ATPase involved i 50.5 7.3E+02 0.016 32.8 31.0 32 654-685 413-444 (908)
423 PHA02414 hypothetical protein 50.0 1.5E+02 0.0033 26.9 8.9 48 634-681 33-80 (111)
424 PF06160 EzrA: Septation ring 49.9 5.9E+02 0.013 31.5 34.3 28 659-686 307-334 (560)
425 KOG2391 Vacuolar sorting prote 49.9 1.1E+02 0.0023 34.6 9.7 20 251-270 127-146 (365)
426 TIGR01069 mutS2 MutS2 family p 49.6 4.2E+02 0.0091 34.2 16.7 7 8-14 15-21 (771)
427 KOG4427 E3 ubiquitin protein l 49.2 17 0.00037 44.5 3.9 17 399-415 31-47 (1096)
428 COG4717 Uncharacterized conser 49.0 7E+02 0.015 32.1 29.9 38 69-106 3-49 (984)
429 PF03961 DUF342: Protein of un 48.8 92 0.002 37.4 10.2 33 652-684 376-408 (451)
430 KOG2077 JNK/SAPK-associated pr 48.8 1.5E+02 0.0033 35.5 11.2 12 36-47 5-16 (832)
431 KOG0240 Kinesin (SMY1 subfamil 48.6 5.9E+02 0.013 31.1 18.2 142 532-684 338-489 (607)
432 PLN02678 seryl-tRNA synthetase 48.4 92 0.002 37.2 9.8 75 609-687 33-107 (448)
433 PRK13169 DNA replication intia 48.3 88 0.0019 29.7 7.7 32 655-686 19-50 (110)
434 PF13747 DUF4164: Domain of un 48.1 2.2E+02 0.0047 26.0 12.6 33 610-642 40-72 (89)
435 PF05377 FlaC_arch: Flagella a 47.9 83 0.0018 25.8 6.4 22 613-634 4-25 (55)
436 PF12795 MscS_porin: Mechanose 47.9 4E+02 0.0086 28.9 21.0 25 608-632 149-173 (240)
437 PF04582 Reo_sigmaC: Reovirus 47.4 37 0.0008 38.3 6.0 76 612-687 80-155 (326)
438 TIGR02231 conserved hypothetic 47.4 1.6E+02 0.0035 36.0 12.3 34 652-685 139-172 (525)
439 PF10046 BLOC1_2: Biogenesis o 47.1 2.4E+02 0.0052 26.1 10.6 25 651-675 73-97 (99)
440 PRK13169 DNA replication intia 47.1 1.1E+02 0.0024 29.0 8.2 14 662-675 40-53 (110)
441 PF13166 AAA_13: AAA domain 46.9 7.2E+02 0.016 31.6 26.3 15 154-168 25-39 (712)
442 TIGR03017 EpsF chain length de 46.8 5.7E+02 0.012 30.4 26.5 8 352-359 41-48 (444)
443 KOG3433 Protein involved in me 46.8 2.1E+02 0.0045 29.4 10.4 68 618-685 76-143 (203)
444 KOG2264 Exostosin EXT1L [Signa 46.8 1.3E+02 0.0028 36.0 10.2 24 883-906 569-592 (907)
445 KOG0162 Myosin class I heavy c 46.4 58 0.0013 40.1 7.6 29 471-499 696-724 (1106)
446 COG5570 Uncharacterized small 46.2 37 0.0008 27.1 4.0 19 660-678 35-53 (57)
447 PRK00106 hypothetical protein; 45.9 6.6E+02 0.014 30.9 27.6 10 1010-1019 460-469 (535)
448 PF07851 TMPIT: TMPIT-like pro 45.6 1.9E+02 0.0041 33.0 11.2 26 975-1000 270-295 (330)
449 PF10458 Val_tRNA-synt_C: Valy 45.6 1.6E+02 0.0035 25.0 8.4 18 664-681 45-62 (66)
450 KOG4364 Chromatin assembly fac 45.3 6.9E+02 0.015 31.0 17.4 16 206-221 52-67 (811)
451 KOG4657 Uncharacterized conser 45.0 3.2E+02 0.0069 29.1 11.7 75 611-685 46-120 (246)
452 PF06632 XRCC4: DNA double-str 44.6 3.2E+02 0.007 31.5 13.0 26 612-637 147-172 (342)
453 PF11544 Spc42p: Spindle pole 44.6 2.2E+02 0.0048 25.0 9.5 49 632-680 7-55 (76)
454 PF11365 DUF3166: Protein of u 44.1 2.1E+02 0.0046 26.4 9.2 18 664-681 75-92 (96)
455 PF13094 CENP-Q: CENP-Q, a CEN 44.0 1.7E+02 0.0038 29.5 10.0 56 632-687 29-84 (160)
456 cd00890 Prefoldin Prefoldin is 43.7 3E+02 0.0065 26.3 12.3 27 659-685 95-121 (129)
457 PF03338 Pox_J1: Poxvirus J1 p 43.1 34 0.00074 33.4 4.2 70 207-276 64-135 (145)
458 PRK10636 putative ABC transpor 43.0 1.6E+02 0.0034 37.2 11.4 32 654-685 601-632 (638)
459 KOG1760 Molecular chaperone Pr 42.8 3.2E+02 0.0068 26.3 10.4 78 609-686 23-116 (131)
460 TIGR00293 prefoldin, archaeal 42.7 3.2E+02 0.0068 26.3 11.4 76 611-686 1-121 (126)
461 PF04899 MbeD_MobD: MbeD/MobD 42.6 2.3E+02 0.0049 24.6 10.3 65 620-684 3-68 (70)
462 PF06810 Phage_GP20: Phage min 42.6 1.7E+02 0.0037 29.6 9.4 61 611-671 15-82 (155)
463 KOG4677 Golgi integral membran 42.5 6.3E+02 0.014 29.8 25.3 217 458-688 163-385 (554)
464 PF06046 Sec6: Exocyst complex 42.5 2.8E+02 0.006 34.3 13.5 163 893-1074 360-528 (566)
465 PF12004 DUF3498: Domain of un 42.1 8.4 0.00018 46.0 0.0 131 510-660 365-495 (495)
466 PF04871 Uso1_p115_C: Uso1 / p 42.1 3.5E+02 0.0077 26.7 15.5 105 556-670 4-110 (136)
467 PF10779 XhlA: Haemolysin XhlA 42.1 1.4E+02 0.003 25.8 7.6 51 625-675 1-51 (71)
468 PF06103 DUF948: Bacterial pro 41.9 2.6E+02 0.0057 25.1 10.7 69 611-679 21-89 (90)
469 PF04582 Reo_sigmaC: Reovirus 41.4 55 0.0012 37.0 6.1 125 536-678 29-153 (326)
470 PRK11546 zraP zinc resistance 41.3 1.5E+02 0.0032 29.5 8.4 70 615-684 46-115 (143)
471 COG0497 RecN ATPase involved i 41.3 7.7E+02 0.017 30.4 24.4 193 485-688 161-372 (557)
472 KOG2010 Double stranded RNA bi 41.2 1.1E+02 0.0024 34.0 8.1 73 611-683 135-207 (405)
473 KOG4403 Cell surface glycoprot 41.2 6.5E+02 0.014 29.5 17.7 140 529-683 236-415 (575)
474 PF02841 GBP_C: Guanylate-bind 41.0 5.7E+02 0.012 28.7 16.8 124 519-678 174-297 (297)
475 KOG3650 Predicted coiled-coil 41.0 83 0.0018 28.6 5.9 47 640-686 52-98 (120)
476 KOG0992 Uncharacterized conser 40.7 7.1E+02 0.015 29.8 20.7 172 505-681 149-331 (613)
477 KOG4196 bZIP transcription fac 40.6 3.5E+02 0.0077 26.3 10.5 67 503-580 49-115 (135)
478 PF06632 XRCC4: DNA double-str 40.5 3E+02 0.0064 31.7 12.0 73 608-680 143-216 (342)
479 PF14073 Cep57_CLD: Centrosome 40.0 4.4E+02 0.0096 27.2 20.4 171 513-683 3-173 (178)
480 PF09798 LCD1: DNA damage chec 39.9 6E+02 0.013 31.9 15.1 194 635-828 2-230 (654)
481 COG0216 PrfA Protein chain rel 39.9 5.9E+02 0.013 29.1 13.6 96 565-684 5-102 (363)
482 KOG3990 Uncharacterized conser 39.8 1.3E+02 0.0027 32.4 8.0 68 618-686 227-295 (305)
483 PF12761 End3: Actin cytoskele 39.7 1.2E+02 0.0026 31.7 7.8 91 561-657 97-194 (195)
484 PF08581 Tup_N: Tup N-terminal 39.7 2.7E+02 0.0059 24.7 11.5 73 608-683 3-75 (79)
485 TIGR03319 YmdA_YtgF conserved 39.7 7.9E+02 0.017 30.1 25.8 157 503-684 13-175 (514)
486 PF06008 Laminin_I: Laminin Do 39.6 5.5E+02 0.012 28.2 25.3 179 508-686 32-241 (264)
487 PF04912 Dynamitin: Dynamitin 39.5 4.5E+02 0.0097 30.9 13.8 153 528-685 209-388 (388)
488 PRK10636 putative ABC transpor 39.5 1.3E+02 0.0028 38.0 9.8 71 610-680 557-634 (638)
489 PF05377 FlaC_arch: Flagella a 39.4 1.1E+02 0.0024 25.2 5.8 40 638-677 1-40 (55)
490 KOG2391 Vacuolar sorting prote 39.4 1.8E+02 0.0039 32.8 9.5 72 614-685 216-287 (365)
491 PF10779 XhlA: Haemolysin XhlA 39.4 1.8E+02 0.0039 25.1 7.8 51 632-682 1-51 (71)
492 KOG0942 E3 ubiquitin protein l 39.0 60 0.0013 41.1 6.4 50 471-520 6-55 (1001)
493 PF04899 MbeD_MobD: MbeD/MobD 38.6 2.6E+02 0.0057 24.2 9.5 60 618-677 9-68 (70)
494 PF13747 DUF4164: Domain of un 38.4 3.1E+02 0.0067 25.0 11.0 70 613-682 5-84 (89)
495 TIGR02894 DNA_bind_RsfA transc 38.2 2.2E+02 0.0049 28.8 9.1 62 623-684 83-144 (161)
496 KOG2629 Peroxisomal membrane a 38.1 3E+02 0.0066 30.5 10.8 77 613-692 119-195 (300)
497 PF10224 DUF2205: Predicted co 37.9 2.5E+02 0.0054 25.1 8.4 53 607-659 14-66 (80)
498 TIGR00414 serS seryl-tRNA synt 37.8 2E+02 0.0043 34.2 10.6 69 609-677 30-102 (418)
499 PF06120 Phage_HK97_TLTM: Tail 37.6 6.5E+02 0.014 28.4 18.9 124 553-686 41-183 (301)
500 PF07111 HCR: Alpha helical co 37.6 9.3E+02 0.02 30.3 32.8 226 449-685 75-372 (739)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-136 Score=1238.50 Aligned_cols=988 Identities=31% Similarity=0.433 Sum_probs=729.4
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
|||++.|.+||++|.+++++|.|.+|+|..||..+||||||+||++||+|||++||.+|+.++...+|||||||||||+|
T Consensus 362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhc-CCCchhHhhHHhhcCCCCChHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~-~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.|||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998 3459999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhccC
Q 001433 160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK 237 (1079)
Q Consensus 160 ~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~ 237 (1079)
|.+||++.+. +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|++.||++..... +
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~ 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-S 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-c
Confidence 9999999886 568899999999999999999999999999999999999999999999999999999999543333 3
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHH
Q 001433 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1079)
Q Consensus 238 ~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1079)
.++++|+|+.|+.||..||++|++|+||||||||||.+|.|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.
T Consensus 601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~ 680 (1463)
T COG5022 601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ 680 (1463)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCC-----CCCcHHHHHHHHHhhcCCC--CceeccceeeeeccccccchhhhhhhcchhhHHHHHHhhhccc
Q 001433 318 RFGILASKVLD-----GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS 390 (1079)
Q Consensus 318 ry~~l~~~~~~-----~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~ 390 (1079)
||++|.|.... +..|.+.+|..||..+.+| .||+|+||||||+|+++.||.+|+..+..+++.||++|||++.
T Consensus 681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~ 760 (1463)
T COG5022 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL 760 (1463)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997332 2257899999999998776 6999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 001433 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR 469 (1079)
Q Consensus 391 Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ-~~~Rg~~aR~~~~~~~ 469 (1079)
|++|.+..+.+..+|...+|+..++....--...+++.+|..||....|+.|...-..+..+| ..++....+.......
T Consensus 761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~ 840 (1463)
T COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999998776665566799999999999999999999999999999 7777777777666777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR 549 (1079)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~ 549 (1079)
...+++.+|++||.+..+.+|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.....
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~ 920 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI 920 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999876662111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc---hHHHHHHHHHHHHHHHHHHH
Q 001433 550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS 626 (1079)
Q Consensus 550 ~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~~Le~~l~ 626 (1079)
.+..+ +.+....|++-+...+ +++.+.. ....+..+.....+|++...
T Consensus 921 ~~~~~---k~e~~a~lk~~l~~~d--------------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 971 (1463)
T COG5022 921 ENLEF---KTELIARLKKLLNNID--------------------------LEEGPSIEYVKLPELNKLHEVESKLKETSE 971 (1463)
T ss_pred hhhHH---HHHHHHHHHHHhhccc--------------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 11000 0011111111111100 0000000 11133444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhhcccCcccccccccCC
Q 001433 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA 703 (1079)
Q Consensus 627 ~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e---~~~lrqq~~~~~~~~~~~~~~~~ 703 (1079)
+....+...+....+.. ....++....+++..+..+...+.+....++.. +..+........ .....++.
T Consensus 972 ~~~~~~k~~~~~~~~~~----~~~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022 972 EYEDLLKKSTILVREGN----KANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred HHHHHHHHhhHHHHhcc----cHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence 33322222221111111 111112222222222222222222222222222 222222110000 00000000
Q ss_pred ccc-cccCC-CCCcccccCCCCCCCCCCcccCCCcchhHhhhhhHHhhhhcHHHHHHHcc-ccCCCc-CCCCchHHHH-H
Q 001433 704 PAT-QSLEN-GHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTI-Y 778 (1079)
Q Consensus 704 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~l~~~i~-~~~~~~-~~~P~~A~il-~ 778 (1079)
... ....+ ..+......+.. ....... +.. ..-..+.+..+....+++.+. .++... ...+.||..+ +
T Consensus 1045 ~~~~~~~~~~~~~~~~~l~~~~----~~l~~~r-~~~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1117 (1463)
T COG5022 1045 LKPLQKLKGLLLLENNQLQARY----KALKLRR-ENS--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117 (1463)
T ss_pred cCcccchhhhhhHHHHHhhhhH----hhhhhcC-ccc--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHH
Confidence 000 00000 000000000000 0000000 000 000111244455666666665 322221 2223345554 4
Q ss_pred HHHhhhcc-hhhhhhHHHHHHHHHHHHhhhcc---CCCcccchhhhhHHHHHH---HHHHHhhhcCCCCCCCCCCCCCcc
Q 001433 779 KCLLHWKS-FEAERTSVFDRLIQMIGSAIENE---DDNDHMAYWLSNTSTLLF---LLQRSLKAAGASGATPHKKPPTAT 851 (1079)
Q Consensus 779 ~c~r~~~~-~~~e~~~ll~~i~~~I~~~i~~~---~d~~~l~fWLSN~~~Ll~---~lq~~~~~~~~~~~~~~~~~~~~~ 851 (1079)
...-+|+. ...+...++...+..+..+.... +-.-.+.||.+|...+++ +.-. .+.+... .
T Consensus 1118 ~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~ 1185 (1463)
T COG5022 1118 IVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAAL----------SEKRLYQ--S 1185 (1463)
T ss_pred HHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCchhhc----------chhhhhH--h
Confidence 44447776 55666777777777777664432 334467899999998763 1100 0000000 0
Q ss_pred chhhhhccccCCCCCchhhhhhhhhhHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 001433 852 SLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGS 931 (1079)
Q Consensus 852 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~qqL~~~~~~iy~~l~~~l~k~l~~~l~~~i~~~~~~~~~ 931 (1079)
+ .+...+ ......| -..+..+..+..++|..|.... .+.+.+.... .|......
T Consensus 1186 ~----------------~~d~~~-~~s~s~v------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~-~~~~~~~~ 1239 (1463)
T COG5022 1186 A----------------LYDEKS-KLSSSEV------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGW-VPTEYSTS 1239 (1463)
T ss_pred h----------------hhcccc-cccHHHH------HHHHHHHHHHHHhccccchhhh--hhhhhhhhcc-chhhhccc
Confidence 0 000000 0000111 1445667777888888887654 2333332111 11110000
Q ss_pred --cccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhhccCCCCCcchhHHhhc
Q 001433 932 --VLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAG 1009 (1079)
Q Consensus 932 --~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~g~qIr~n 1009 (1079)
....+...+..+...+.+.++.+++.+.++++.+.+.+.+..-.++++.-++|+.+||.|..|..-..|+.|-++.+|
T Consensus 1240 ~~~~~~~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n 1319 (1463)
T COG5022 1240 LKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYN 1319 (1463)
T ss_pred cccccchhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhccccccc
Confidence 000011112245567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccccccChHhhhhhHHHHHhHHhhcccCcCCHHHHHhCcCCCCCHHHHHHHHhh
Q 001433 1010 LAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPVSQFFLFVTVCVL 1074 (1079)
Q Consensus 1010 ls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Qi~~il~~ 1074 (1079)
.+.+.+||+.++ -..+..+|+++.||++.+++.+++..+++++ .+.|..|+|+|+.+|+.+
T Consensus 1320 ~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~ 1380 (1463)
T COG5022 1320 SEELDDWCREFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSR 1380 (1463)
T ss_pred chhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHh
Confidence 999999999998 3445589999999999999988888888788 699999999999999876
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.7e-107 Score=994.50 Aligned_cols=416 Identities=33% Similarity=0.540 Sum_probs=391.9
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
|||+++|.++||+|++.+++|.|++|++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f 475 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVF 475 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887667889999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1079)
+.|||||||||||||||||+||+|||+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f 555 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKF 555 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCC-CCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhccCCC
Q 001433 161 AQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1079)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1079)
++||++++++|++|.+|+. ....|+|+||||+|+|+++||++||+|+++++++++|++|+++||+.||++......+..
T Consensus 556 ~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 635 (821)
T PTZ00014 556 VSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA 635 (821)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccccccc
Confidence 9999999999999999885 468999999999999999999999999999999999999999999999987543333334
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001433 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1079)
Q Consensus 240 ~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1079)
+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||
T Consensus 636 k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY 715 (821)
T PTZ00014 636 KGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQF 715 (821)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-CCcHHHHHHHHHhhcCC--CCceeccceeeeeccccccchhhhhhhcc---hhhHHHHHHhhhcccchh
Q 001433 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASIIQRKVRSYLSRKN 393 (1079)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~l~Rk~ 393 (1079)
++|.+..... ..|+++.|+.||..+++ ++|++|+||||||+|+++.||.+|.+++. .++..||++||+|++|++
T Consensus 716 ~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 716 KYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRK 795 (821)
T ss_pred HhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865433 35899999999999876 48999999999999999999998887764 578899999999999999
Q ss_pred hhhhhhhhhhhhhHHhhhccchh
Q 001433 394 YIMLRRSAIHIQAACRGQLARTV 416 (1079)
Q Consensus 394 y~~~r~a~i~IQ~~~Rg~lar~~ 416 (1079)
|.+++.+++.||+++|||++++.
T Consensus 796 ~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 796 VRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.3e-104 Score=938.27 Aligned_cols=457 Identities=61% Similarity=0.961 Sum_probs=439.6
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCcccccccccCCcc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ-DPNSKSLIGVLDIYGFES 79 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgvLDi~GFE~ 79 (1079)
|||++.|..|||.|.+.+++++|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||+
T Consensus 301 g~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEs 380 (862)
T KOG0160|consen 301 GCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFES 380 (862)
T ss_pred CCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccc
Confidence 8999999999999999999999999999999999999999999999999999999999987 455689999999999999
Q ss_pred ccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHH
Q 001433 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
|+.|||||||||||||||||+||+|||+.||+||.+|||+|+.|+|.||++|+|+|++ |.|+++||||+|++|.++|++
T Consensus 381 F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~ 459 (862)
T KOG0160|consen 381 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDET 459 (862)
T ss_pred cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999 779999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhccCCC
Q 001433 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1079)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1079)
|..||++.+.+|+.|.+|+.+++.|+|.||||+|+|++.||++||+|+|++++.+++..|+++|+..+|++...++.+.+
T Consensus 460 ~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~ 539 (862)
T KOG0160|consen 460 LAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS 539 (862)
T ss_pred HHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665555566
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001433 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1079)
Q Consensus 240 ~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1079)
+++||+++|+.+|..||.+|++|+||||||||||+.+.|+.||+.+|++|||+|||||++||+++|||.|++|.||+.||
T Consensus 540 ~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~ 619 (862)
T KOG0160|consen 540 KRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRY 619 (862)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCcHHHHHHHHHhhcCCCCceeccceeeeeccccccchhhhhhhcchhhHHHHHHhhhcccchhhhhhhh
Q 001433 320 GILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRR 399 (1079)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~y~~~r~ 399 (1079)
++|+| ... ..|++..|+.+|+..+++.||+|+|||||++|+++.||.+|..++..+++.||+.+|+|+.|++|.++|.
T Consensus 620 ~~L~~-~~~-~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~ 697 (862)
T KOG0160|consen 620 GILMP-NDS-ASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS 697 (862)
T ss_pred hhcCc-chh-cccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 332 3466999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001433 400 SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1079)
Q Consensus 400 a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~~aR~ 463 (1079)
+++.||+++||+++|+ ..+ +..||+.||+.||+|..|+.|..++.+++.+|+.+||+.+|.
T Consensus 698 ~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 698 AVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 334 778999999999999999999999999999999999999887
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-101 Score=978.88 Aligned_cols=624 Identities=35% Similarity=0.543 Sum_probs=508.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
||++.+|.+++++++++++++.|.+..+.+|+..+..++||++|+|||.|+|.+||.+|....+..+|||||||+|||+|
T Consensus 382 g~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIf 461 (1930)
T KOG0161|consen 382 GINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIF 461 (1930)
T ss_pred CCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccccc
Confidence 89999999999999999999999999999999999999999999999999999999999877778899999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccc-cCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
+.||||||||||+||||||+||+|+|.+||++|.+|||.|.+|+| .|-+||||||+++. ||+++|||||++|++||.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp~-Gi~slLdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKPM-GILSLLDEECVVPKATDKT 540 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhchh-hHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999 89999999999855 9999999999999999999
Q ss_pred HHHHHHHHh-cCCCCcCCCC--CCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccch---
Q 001433 160 FAQKLYQTF-KNHKRFSKPK--LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--- 233 (1079)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--- 233 (1079)
|++||...| |+||.|.+|+ ....+|.|.||||+|.|++.||++||+|++++.++.+|+.|++++|+.||.+...
T Consensus 541 f~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~ 620 (1930)
T KOG0161|consen 541 FLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA 620 (1930)
T ss_pred HHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch
Confidence 999999999 8999999997 4568999999999999999999999999999999999999999999999987321
Q ss_pred --------hccCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhC
Q 001433 234 --------ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1079)
Q Consensus 234 --------~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~G 305 (1079)
..++++.|.||+..++.+|+.||++|++|+|||||||.||+.|.|+.+|.++|+.||+|.||||+|||++.|
T Consensus 621 ~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~G 700 (1930)
T KOG0161|consen 621 AAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQG 700 (1930)
T ss_pred hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhh
Confidence 123455678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhcccCCC-CCcHHHHHHHHHhhcCCC--CceeccceeeeeccccccchhhhhhhcchhhHHHH
Q 001433 306 YPTRKPFDEFVDRFGILASKVLDG-SSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1079)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~aa~~IQ 382 (1079)
||.|++|.+|..||.++.|...++ ..|.+.+|..++..+..+ -|++|.||||||+|+++.||.+|+..+....+.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999555554433 467799999999988554 69999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhhh---hhhhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001433 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1079)
Q Consensus 383 ~~~R~~l~Rk~y~~~---r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~ 459 (1079)
+.+|||++|+.|.+. ..|+.+||+++|.|+. .|.|.|++.|.++++.+.+...-....
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~-------------------lr~w~W~~Lf~kvkPLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK-------------------LRTWPWWRLFTKVKPLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999887 4789999999999976 567888888888887554332222111
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 460 AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEE 539 (1079)
Q Consensus 460 ~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~e 539 (1079)
..-.++...+...... ..-|.-+.. ...++......+|.. ..+++ ....++......+.+.+..+|..+.+
T Consensus 842 ~~~~e~~~l~~~l~~~---e~~~~ele~-~~~~~~~e~~~l~~~---l~~e~--~~~~~aee~~~~~~~~k~~le~~l~~ 912 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKS---ESKRKELEE-KLVKLLEEKNDLQEQ---LQAEK--ENLAEAEELLERLRAEKQELEKELKE 912 (1930)
T ss_pred HhHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100000 000000000 011111111111111 11111 22344566667788889999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--------------
Q 001433 540 LTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQE-------------- 602 (1079)
Q Consensus 540 l~~rl~~E~~~~~~le~~~~---~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e-------------- 602 (1079)
++.+++.+++....++..+. +++..+++.+++++..+.+++.++.....+++.+.+++..+++
T Consensus 913 ~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe 992 (1930)
T KOG0161|consen 913 LKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEE 992 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777776544 5667788888888888888877766666666655555433222
Q ss_pred -------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 603 -------VPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1079)
Q Consensus 603 -------~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l 653 (1079)
....+++++..+.+.+.+|++.+++++..++..++...++++...++..++
T Consensus 993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222267778889999999999999999888876666666665555555544
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=4.2e-99 Score=912.47 Aligned_cols=374 Identities=83% Similarity=1.313 Sum_probs=361.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
|||+++|.++||+|++.+++|.+++++++++|..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f 380 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESF 380 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1079)
+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f 460 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETF 460 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhccCCCC
Q 001433 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240 (1079)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~ 240 (1079)
++||++++++|++|.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+..+.+.++
T Consensus 461 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k 540 (674)
T cd01384 461 AQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540 (674)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999876555445567
Q ss_pred CcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHHHHh
Q 001433 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFG 320 (1079)
Q Consensus 241 ~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~ 320 (1079)
++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.||+
T Consensus 541 ~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~ 620 (674)
T cd01384 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFG 620 (674)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCcHHHHHHHHHhhcCCCCceeccceeeeeccccccchhhhhhhc
Q 001433 321 ILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVL 374 (1079)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r~~~l 374 (1079)
+|++.......+.++.|+.||..++.++|++|+||||||+|+++.||..|.+.+
T Consensus 621 ~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 621 ILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999987766678899999999999999999999999999999999999998753
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.7e-97 Score=830.56 Aligned_cols=434 Identities=39% Similarity=0.666 Sum_probs=399.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CCCCccccccccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-----PNSKSLIGVLDIY 75 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgvLDi~ 75 (1079)
++.++.|+++||+|++.++||.+.+++|+.||.++||||||+||+|||+|||.+||++|... ......|||||||
T Consensus 304 ~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiy 383 (1001)
T KOG0164|consen 304 SVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIY 383 (1001)
T ss_pred cCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEee
Confidence 47889999999999999999999999999999999999999999999999999999998532 1235889999999
Q ss_pred CCccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCC-
Q 001433 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPR- 154 (1079)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~- 154 (1079)
|||+|+.||||||||||+||||||.|++-++|.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHHHhcCCCCcCCCC-------CCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCcccccc
Q 001433 155 STHETFAQKLYQTFKNHKRFSKPK-------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSL 227 (1079)
Q Consensus 155 ~~d~~~~~kl~~~~~~~~~~~~p~-------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~l 227 (1079)
.||.+|+++|.+.+++|++|..-. ++...|-|.||||+|+|++.||++||+|.+..|+-.+|.+|++|++++|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~ 543 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSL 543 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHh
Confidence 699999999999999999996432 2447899999999999999999999999999999999999999999999
Q ss_pred ccccchhcc-CCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCC
Q 001433 228 FLPLAEESS-KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY 306 (1079)
Q Consensus 228 f~~~~~~~~-~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gy 306 (1079)
|+....+-. ...+++|+|++|+.|+..||++|.+-+|+||||||||+.+.|+.||...|.+|.+++|++|.+|++++||
T Consensus 544 fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgf 623 (1001)
T KOG0164|consen 544 FPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGF 623 (1001)
T ss_pred CCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhccc
Confidence 997532221 2237789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhcccCCC--CCcHHHHHHHHHhhcCCC-Cceeccceeeeeccc-cccchhhhhhhcchhhHHHH
Q 001433 307 PTRKPFDEFVDRFGILASKVLDG--SSDEVTACKRLLEKVGLE-GYQIGKTKVFLRAGQ-MADLDARRTEVLGRSASIIQ 382 (1079)
Q Consensus 307 p~r~~~~~F~~ry~~l~~~~~~~--~~~~~~~~~~il~~~~~~-~~~iG~tkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ 382 (1079)
.+|.+|+.|+.||+++++..|+. ..++++.|..+++..+.. ++.+|+||||+|+.. +..||..|.+++-..+..||
T Consensus 624 ahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQ 703 (1001)
T KOG0164|consen 624 AHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQ 703 (1001)
T ss_pred ccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987763 356799999999999875 899999999999864 68999999999999999999
Q ss_pred HHhhhcccchhhhhhhhhhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHHh
Q 001433 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 444 (1079)
Q Consensus 383 ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~ 444 (1079)
+.||||++|.+|++|+.+++.|+ +||.+..+ .++..||+.+|++..++.|.+
T Consensus 704 K~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 704 KAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 99999999999999999999999 78855432 456778999999999998864
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=7.3e-96 Score=889.69 Aligned_cols=369 Identities=51% Similarity=0.830 Sum_probs=348.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCcccccccccCC
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---PNSKSLIGVLDIYGF 77 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgvLDi~GF 77 (1079)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|++. .....+|||||||||
T Consensus 299 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GF 378 (691)
T cd01380 299 GVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGF 378 (691)
T ss_pred CCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcc
Confidence 79999999999999999999999999999999999999999999999999999999999876 456789999999999
Q ss_pred ccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCCh
Q 001433 78 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTH 157 (1079)
Q Consensus 78 E~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d 157 (1079)
|+|+.||||||||||||||||++||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td 457 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSD 457 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhc
Q 001433 158 ETFAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1079)
Q Consensus 158 ~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1079)
++|++||++.++ +|+.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~ 537 (691)
T cd01380 458 ESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELAS 537 (691)
T ss_pred HHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccc
Confidence 999999999998 899999999888999999999999999999999999999999999999999999999997642110
Q ss_pred -----------------cCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhH
Q 001433 236 -----------------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1079)
Q Consensus 236 -----------------~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~ 298 (1079)
....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~ 617 (691)
T cd01380 538 SSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617 (691)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHH
Confidence 011356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCC--CCceeccceeeeeccccccchhhh
Q 001433 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 299 iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
|||+++|||+|++|.+|+.||++|+|.......|.++.|+.||..+.. ++|++|+||||||+|+++.||+.|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999998764456899999999999865 589999999999999999999876
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.1e-95 Score=885.98 Aligned_cols=369 Identities=42% Similarity=0.713 Sum_probs=348.9
Q ss_pred CCCHHHHHHHHhhceEeecC----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccccc
Q 001433 1 MCDAKALEDSLCKREIVTRD----ETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~----e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~ 75 (1079)
|||+++|.++||+|++.+++ |.+++|+++++|..+||+|||+||++||+|||.+||.+|.+. .....+|||||||
T Consensus 295 gv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIf 374 (674)
T cd01378 295 GVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIY 374 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecc
Confidence 79999999999999999998 999999999999999999999999999999999999999875 5567899999999
Q ss_pred CCccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhc-CCCchhHhhHHhhcCC-
Q 001433 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1079)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~-~~~Gil~lLdee~~~~- 153 (1079)
|||+|+.||||||||||||||||++||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++|
T Consensus 375 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~ 454 (674)
T cd01378 375 GFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454 (674)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccch
Q 001433 154 RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1079)
Q Consensus 154 ~~~d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1079)
+|||++|++||++++++|+++.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+....
T Consensus 455 ~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~ 534 (674)
T cd01378 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534 (674)
T ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999986433
Q ss_pred hccCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChH
Q 001433 234 ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFD 313 (1079)
Q Consensus 234 ~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~ 313 (1079)
.. ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 535 ~~-~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~ 613 (674)
T cd01378 535 AD-SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFD 613 (674)
T ss_pred cc-ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHH
Confidence 22 22356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCC-CCCcHHHHHHHHHhhcCCC--Cceeccceeeeecc-ccccchhhh
Q 001433 314 EFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARR 370 (1079)
Q Consensus 314 ~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~-~~~~Le~~r 370 (1079)
+|+.||++|++.... ...|+++.|+.||..++++ +|++|+||||||+| +++.||..|
T Consensus 614 ~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 614 KFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999987532 3468999999999998764 89999999999998 688999876
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.4e-95 Score=887.46 Aligned_cols=370 Identities=44% Similarity=0.753 Sum_probs=347.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
|||+++|.++||+|++.+++|.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 308 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f 387 (693)
T cd01377 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIF 387 (693)
T ss_pred CCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987778899999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccc-cCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~ 467 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKT 467 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCc--CCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhc--
Q 001433 160 FAQKLYQTFKNHKRF--SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-- 235 (1079)
Q Consensus 160 ~~~kl~~~~~~~~~~--~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-- 235 (1079)
|++||++.+++++.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+
T Consensus 468 ~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 547 (693)
T cd01377 468 FVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD 547 (693)
T ss_pred HHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc
Confidence 999999999999887 4455567899999999999999999999999999999999999999999999998643211
Q ss_pred --------cCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCC
Q 001433 236 --------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1079)
Q Consensus 236 --------~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp 307 (1079)
.+.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||
T Consensus 548 ~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp 627 (693)
T cd01377 548 GGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFP 627 (693)
T ss_pred cccccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCC
Confidence 112345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhcccCC-CCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhhh
Q 001433 308 TRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
+|++|.+|+.||++|++..+. ...|.++.|+.||..++++ +|++|+||||||+|++..||.+|
T Consensus 628 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 628 NRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 999999999999999987642 3468899999999998764 89999999999999999999876
No 10
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.2e-95 Score=883.64 Aligned_cols=370 Identities=44% Similarity=0.712 Sum_probs=348.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCcccccccccCCcc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgvLDi~GFE~ 79 (1079)
|||+++|.++||+|++.++||.+++|++++||..+||||||+||++||+|||.+||.+|.++ .....+||||||||||+
T Consensus 295 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~ 374 (671)
T cd01381 295 GVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFEN 374 (671)
T ss_pred CCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999755 45678999999999999
Q ss_pred ccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHH
Q 001433 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
|+.||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 375 f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~ 454 (671)
T cd01381 375 FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQT 454 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCC-CCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhc-cC
Q 001433 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-SK 237 (1079)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~ 237 (1079)
|++||++.+++|+.|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.....+ ..
T Consensus 455 f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~ 534 (671)
T cd01381 455 MLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAET 534 (671)
T ss_pred HHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccc
Confidence 99999999999999998874 45799999999999999999999999999999999999999999999998754211 12
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHH
Q 001433 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1079)
Q Consensus 238 ~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1079)
..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.
T Consensus 535 ~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ 614 (671)
T cd01381 535 RKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVE 614 (671)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHH
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCC--CCcHHHHHHHHHhhcCC--CCceeccceeeeeccccccchhhh
Q 001433 318 RFGILASKVLDG--SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 318 ry~~l~~~~~~~--~~~~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
||++|++..... ..+.++.|+.|++.+.+ ++|++|+||||||+++++.||..|
T Consensus 615 rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 615 RYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999875532 35778999999998765 489999999999999999999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.6e-95 Score=880.23 Aligned_cols=369 Identities=39% Similarity=0.675 Sum_probs=343.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
|||+++|.++||++++.+++|.+.+|+++++|..+||||||+||++||+|||.+||.+|.+. ....+||||||||||+|
T Consensus 296 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f 374 (677)
T cd01387 296 QISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDL 374 (677)
T ss_pred CCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999864 45679999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1079)
+.||||||||||||||||++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~ 454 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchh------
Q 001433 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEE------ 234 (1079)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~------ 234 (1079)
++|++..+++|+.|.+|+.+.+.|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+.....
T Consensus 455 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 534 (677)
T cd01387 455 LQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL 534 (677)
T ss_pred HHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999753211
Q ss_pred ---c--cCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCc
Q 001433 235 ---S--SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTR 309 (1079)
Q Consensus 235 ---~--~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r 309 (1079)
+ ++..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|
T Consensus 535 ~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r 614 (677)
T cd01387 535 GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVR 614 (677)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCcc
Confidence 0 01124579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhhh
Q 001433 310 KPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 310 ~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
++|.+|+.||++|++.......+.+..+..++..++++ .|++|+||||||++++..||..|
T Consensus 615 ~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 615 LPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 99999999999999975543333445557888877654 79999999999999999999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=4.6e-95 Score=877.66 Aligned_cols=366 Identities=46% Similarity=0.795 Sum_probs=341.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcccccccccCCcc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1079)
|||+++|.++||+|++.+++|.++++++++||..+||||||+||++||+|||.+||.+|++.. ....+||||||||||+
T Consensus 298 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~ 377 (677)
T cd01383 298 GCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377 (677)
T ss_pred CCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999998654 3468999999999999
Q ss_pred ccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHH
Q 001433 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
|+.||||||||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~ 457 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLT 457 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccc-----h-
Q 001433 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLA-----E- 233 (1079)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~-----~- 233 (1079)
|++||++++++|+.|.+|+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|.... .
T Consensus 458 f~~kl~~~~~~~~~~~~~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~ 534 (677)
T cd01383 458 FANKLKQHLKTNSCFRGER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVV 534 (677)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhcccccc
Confidence 9999999999999998775 468999999999999999999999999999999999999999876 554320 0
Q ss_pred h-----ccCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCC
Q 001433 234 E-----SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1079)
Q Consensus 234 ~-----~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~ 308 (1079)
. .....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+
T Consensus 535 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 614 (677)
T cd01383 535 GPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPT 614 (677)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCc
Confidence 0 11123568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhhh
Q 001433 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
|++|.+|+.||++|++.... ..|++..|+.||..++++ +|++|+||||||+|+++.||..|
T Consensus 615 R~~~~~F~~rY~~L~~~~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 615 RMTHQEFARRYGFLLLENIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cccHHHHHHHHHHhCccccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99999999999999997654 357899999999988764 89999999999999999999876
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.7e-94 Score=874.56 Aligned_cols=367 Identities=40% Similarity=0.649 Sum_probs=344.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCcccccccccCC
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP---NSKSLIGVLDIYGF 77 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgvLDi~GF 77 (1079)
|||+++|.++||++++.++||.+++|++++||..+||+|||+||++||+|||++||.+|++.. ....+|||||||||
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GF 386 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGF 386 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCcc
Confidence 799999999999999999999999999999999999999999999999999999999998643 34689999999999
Q ss_pred ccccC-CchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCC
Q 001433 78 ESFKT-NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1079)
Q Consensus 78 E~f~~-NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~ 156 (1079)
|+|+. ||||||||||||||||++|++|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+||
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhcc
Q 001433 157 HETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS 236 (1079)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~ 236 (1079)
|++|++|+++.+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+.+..
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 546 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVF 546 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccc
Confidence 99999999999999999999988788999999999999999999999999999999999999999999999976432211
Q ss_pred ---------CCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCC
Q 001433 237 ---------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1079)
Q Consensus 237 ---------~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp 307 (1079)
++.+.+||+++|+.+|+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||++.|||
T Consensus 547 ~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp 626 (692)
T cd01385 547 RWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYS 626 (692)
T ss_pred ccccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCC
Confidence 12234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhhh
Q 001433 308 TRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
+|++|.+|+.||++|+|... ...++.|+.||+.++++ +|++|+||||||+++++.||..-
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred ccccHHHHHHHHHHhCcccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 99999999999999998743 23467799999998775 89999999999999999998743
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.2e-94 Score=876.98 Aligned_cols=367 Identities=40% Similarity=0.656 Sum_probs=343.2
Q ss_pred CCCHHHHHHHHhhceEe-----ecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001433 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~-----~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1079)
|||+++|.++||+|++. ++|+.+++|++++||..+||+|||+||++||+|||.+||.+|..+ ....+|||||||
T Consensus 327 gv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIf 405 (717)
T cd01382 327 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIA 405 (717)
T ss_pred CCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEecc
Confidence 79999999999999998 789999999999999999999999999999999999999999765 356789999999
Q ss_pred CCccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCC
Q 001433 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1079)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~ 155 (1079)
|||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++
T Consensus 406 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 406 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred ccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCcccc
Q 001433 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1079)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1079)
||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++||+
T Consensus 486 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~ 565 (717)
T cd01382 486 SDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLR 565 (717)
T ss_pred CHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHH
Confidence 9999999999999999988777532 357999999999999999999999999999999999999999999
Q ss_pred ccccccchhc---c--CCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHH
Q 001433 226 SLFLPLAEES---S--KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300 (1079)
Q Consensus 226 ~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~ir 300 (1079)
.||+...... . +..++.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+||
T Consensus 566 ~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vr 645 (717)
T cd01382 566 SLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLD 645 (717)
T ss_pred HHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHH
Confidence 9998643211 1 1125679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhh
Q 001433 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1079)
Q Consensus 301 i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~ 369 (1079)
|+++|||+|++|.+|+.||+.|+|.... ..|+++.|+.||..++++ +|++|+||||||+|+++.||++
T Consensus 646 i~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 646 LMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999986554 358899999999998764 8999999999999999999975
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.4e-93 Score=861.70 Aligned_cols=347 Identities=40% Similarity=0.707 Sum_probs=331.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----CCccccccccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-----SKSLIGVLDIY 75 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgvLDi~ 75 (1079)
|||+++|.++||+|++.++||.|++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+|||||||
T Consensus 302 gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~ 381 (653)
T cd01379 302 CIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIF 381 (653)
T ss_pred CCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEecc
Confidence 7999999999999999999999999999999999999999999999999999999999986532 35799999999
Q ss_pred CCccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCC
Q 001433 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1079)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~ 155 (1079)
|||+|+.||||||||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|
T Consensus 382 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 382 GFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred ccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhc
Q 001433 156 THETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1079)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1079)
||++|++|++.+++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|
T Consensus 462 td~~~~~kl~~~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---------------- 524 (653)
T cd01379 462 TDQTLVEKFEDNLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---------------- 524 (653)
T ss_pred CHHHHHHHHHHhcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------
Confidence 99999999999885 5678889888889999999999999999999999999999999999987
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHH
Q 001433 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1079)
Q Consensus 236 ~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F 315 (1079)
+||+++|+.||++||++|++|+||||||||||+.+.|+.||+..|++||||+||+|+|||+++|||+|++|.+|
T Consensus 525 ------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F 598 (653)
T cd01379 525 ------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANF 598 (653)
T ss_pred ------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHhhcCCCCceeccceeeeeccccccchhhh
Q 001433 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 316 ~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
+.||++|++.......+.++.|+.||..++.++|++|+||||||+|+++.||++|
T Consensus 599 ~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 599 IRRYCFLAYRFEEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHHhccccccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999976544446789999999999999999999999999999999999865
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=5.8e-93 Score=866.96 Aligned_cols=371 Identities=53% Similarity=0.889 Sum_probs=352.1
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
||++++|.++||++++.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 303 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f 382 (677)
T smart00242 303 GVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIF 382 (677)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987678899999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1079)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~ 462 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTF 462 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCC-CCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhccCCC
Q 001433 161 AQKLYQTFKNHKRFSKPK-LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1079)
Q Consensus 161 ~~kl~~~~~~~~~~~~p~-~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1079)
++||++.+++|+.|.+|+ .....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+.......+..
T Consensus 463 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 542 (677)
T smart00242 463 LEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKK 542 (677)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccC
Confidence 999999999999999984 5668999999999999999999999999999999999999999999999987644333344
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001433 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1079)
Q Consensus 240 ~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1079)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||+..|++||||+||+|++||++.|||+|++|.+|+.||
T Consensus 543 ~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry 622 (677)
T smart00242 543 RFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRY 622 (677)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-CCcHHHHHHHHHhhcCC--CCceeccceeeeeccccccchhhhh
Q 001433 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRT 371 (1079)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iG~tkVFlr~~~~~~Le~~r~ 371 (1079)
++|++..... ..|+++.|+.||..+++ ++|++|+||||||++++..||+.|+
T Consensus 623 ~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 623 RVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999875432 34689999999999865 5899999999999999999998874
No 17
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4.8e-91 Score=853.08 Aligned_cols=370 Identities=49% Similarity=0.819 Sum_probs=344.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccCCccc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~GFE~f 80 (1079)
|||+++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 296 gv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 375 (679)
T cd00124 296 GLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIF 375 (679)
T ss_pred CCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999887677899999999999999
Q ss_pred cCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHHH
Q 001433 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1079)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~~ 160 (1079)
+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~ 455 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETF 455 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCC-CCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhc----
Q 001433 161 AQKLYQTFKNHKRFSK-PKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES---- 235 (1079)
Q Consensus 161 ~~kl~~~~~~~~~~~~-p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---- 235 (1079)
++||++.+++|+.|.. ++.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+
T Consensus 456 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 535 (679)
T cd00124 456 LEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS 535 (679)
T ss_pred HHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc
Confidence 9999999999988644 44566899999999999999999999999999999999999999999999998642111
Q ss_pred -------cCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCC
Q 001433 236 -------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1079)
Q Consensus 236 -------~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~ 308 (1079)
.+..+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||++.|||+
T Consensus 536 ~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~ 615 (679)
T cd00124 536 TGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615 (679)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCc
Confidence 1223678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhhh
Q 001433 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
|++|.+|+.||++|++.........++.|+.++..++++ +|++|+||||||++++..||..|
T Consensus 616 R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred eeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 999999999999999876544333344499999988764 89999999999999999999865
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-91 Score=783.40 Aligned_cols=400 Identities=38% Similarity=0.664 Sum_probs=370.7
Q ss_pred CCCHHHHHHHHhhceEee----cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCccccccccc
Q 001433 1 MCDAKALEDSLCKREIVT----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIY 75 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~ 75 (1079)
|||+..|++.||.|.+.+ +.+.+.+||+++||.+.||||||+||.+||||||++||.+|.... ....+|||||||
T Consensus 312 gi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIY 391 (1106)
T KOG0162|consen 312 GIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIY 391 (1106)
T ss_pred cCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEee
Confidence 799999999999999986 368999999999999999999999999999999999999997433 367899999999
Q ss_pred CCccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcC-CCchhHhhHHhhcCC-
Q 001433 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKK-PGGIIALLDEACMFP- 153 (1079)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~-~~Gil~lLdee~~~~- 153 (1079)
|||+|+.||||||||||.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||.| |.||+++|||.|.-.
T Consensus 392 GFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 392 GFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999974 679999999999854
Q ss_pred ---CCChHHHHHHHHHHhcCCCCcCCCCCCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccc
Q 001433 154 ---RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1079)
Q Consensus 154 ---~~~d~~~~~kl~~~~~~~~~~~~p~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1079)
.|.|++|+++|...+++||+|..- ...|+|+||||+|+||++||.+||+|.+..|+++|++.|+++|++.||+.
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 467999999999999999999843 47899999999999999999999999999999999999999999999998
Q ss_pred cchhccCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCcc
Q 001433 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1079)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~ 310 (1079)
..+.. +..+++|.|++.+.|.+.|++||..|.||||||||||+.|.|+.||...|++|+.|+|+-|.|||+++||.+|.
T Consensus 549 ~v~~d-skrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr 627 (1106)
T KOG0162|consen 549 NVDAD-SKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRR 627 (1106)
T ss_pred hhccc-ccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHH
Confidence 64433 34578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhcccCC-CCCcHHHHHHHHHhhcCC--CCceeccceeeeecc-ccccchhhhhhhcchhhHHHHHHhh
Q 001433 311 PFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAG-QMADLDARRTEVLGRSASIIQRKVR 386 (1079)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~--~~~~iG~tkVFlr~~-~~~~Le~~r~~~l~~aa~~IQ~~~R 386 (1079)
.|+-|++||.+|.|..++ +.+|++++|+.||....+ ++||+|.||||++.. .+..||.+|+......|.+||++||
T Consensus 628 ~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWR 707 (1106)
T KOG0162|consen 628 AFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWR 707 (1106)
T ss_pred HHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999998754 457999999999998755 589999999999985 5789999999999999999999999
Q ss_pred hcccchhhhhhhhhhhhh
Q 001433 387 SYLSRKNYIMLRRSAIHI 404 (1079)
Q Consensus 387 ~~l~Rk~y~~~r~a~i~I 404 (1079)
.|++|++|.++|.-+..+
T Consensus 708 rfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 708 RFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988655443
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=8.5e-90 Score=838.78 Aligned_cols=370 Identities=29% Similarity=0.455 Sum_probs=330.1
Q ss_pred CCCHHHHHHHHhhceEeecCc-------------eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 001433 1 MCDAKALEDSLCKREIVTRDE-------------TITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKS 67 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e-------------~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~ 67 (1079)
|||+++|.++|+++++.++++ .++.++++.+|..+||||||+||++||+|||.+||.+|.++.....
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~ 373 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIA 373 (767)
T ss_pred CCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 799999999999998776643 3445788999999999999999999999999999999988766678
Q ss_pred ccccccccCCccccC------CchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccc-cCcHHHHHHhhcCC-
Q 001433 68 LIGVLDIYGFESFKT------NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKP- 139 (1079)
Q Consensus 68 ~IgvLDi~GFE~f~~------NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idli~~~~- 139 (1079)
+||||||||||+|+. |||||||||||||||||+||++||+.||+||.+|||+|+++++ .||++|||||+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 999999999999984 8999999999999999999999999999999999999997666 79999999999865
Q ss_pred -------------CchhHhhHHhhcCCCCChHHHHHHHHHHhcCCCCcCCCC------CCCCCeEEEEcCcc--eEEecc
Q 001433 140 -------------GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGD--VTYQTE 198 (1079)
Q Consensus 140 -------------~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~H~ag~--V~Y~~~ 198 (1079)
.|||++|||||++|++||++|++||++.+++|++|.++. .....|+|+||||+ |+|++.
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~ 533 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVT 533 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCC
Confidence 599999999999999999999999999999988887622 12468999999995 999999
Q ss_pred cchhhcchhh-hHHHHHHHhhcCCccccccccccch-------------hcc----------C--------CCCCcchHH
Q 001433 199 LFLDKNKDYV-VAEHQALLSASKCSFVSSLFLPLAE-------------ESS----------K--------TSKFSSIGS 246 (1079)
Q Consensus 199 ~fl~kN~d~~-~~~~~~ll~~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~ 246 (1079)
||++||+|.+ +.+++++|++|++++|..||+.... ..+ + ..+.+||++
T Consensus 534 gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~ 613 (767)
T cd01386 534 GWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCV 613 (767)
T ss_pred CHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 9999999965 6899999999999999999954210 000 0 013458999
Q ss_pred HHHHHHHHHHHHhcCCCCeeeeecCCCCCCC----------------------CCcccchhhhHHhhccchhhHHHHHhh
Q 001433 247 RFKQQLQQLLETLSSSEPHYIRCVKPNNLLK----------------------PAIFENKNVLQQLRCGGVMEAIRISCA 304 (1079)
Q Consensus 247 ~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~ 304 (1079)
+|+.||+.||++|++|+||||||||||+.|. |+.||.++|++||||+||+|+|||+++
T Consensus 614 qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~ 693 (767)
T cd01386 614 QVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRL 693 (767)
T ss_pred HHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhc
Confidence 9999999999999999999999999999974 789999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhcccCC------CCCcHHHHHHHHHhhcCCC--Cceeccceeeeeccccccchhhh
Q 001433 305 GYPTRKPFDEFVDRFGILASKVLD------GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1079)
Q Consensus 305 Gyp~r~~~~~F~~ry~~l~~~~~~------~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r 370 (1079)
|||+|++|.+|+.||++|.+...+ ...|++++|+.||..++++ +|++|+||||||+|+++.||..|
T Consensus 694 Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 694 GFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999999999999999886432 1358899999999998764 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-85 Score=736.33 Aligned_cols=436 Identities=38% Similarity=0.625 Sum_probs=381.5
Q ss_pred CCCHHHHHHHHhhceEeec-----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 001433 1 MCDAKALEDSLCKREIVTR-----DETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~-----~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgvLDi~ 75 (1079)
|+|.++|.-.||.|.+.+. |-.|.+||.+.+|..+||||||+||++||||||.+||+++-.. .+..|||||||.
T Consensus 381 Gld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiA 459 (1259)
T KOG0163|consen 381 GLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIA 459 (1259)
T ss_pred CCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeec
Confidence 8999999999999998753 5578999999999999999999999999999999999999543 578999999999
Q ss_pred CCccccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCC
Q 001433 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1079)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~ 155 (1079)
|||-|.+||||||||||+|||||+|||+.+++.|||.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+.
T Consensus 460 GFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~ 539 (1259)
T KOG0163|consen 460 GFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKP 539 (1259)
T ss_pred cceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCcCCCCCC----------CCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCcccc
Q 001433 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1079)
Q Consensus 156 ~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1079)
|++.|....+..+++|-+...|+.+ ...|.|+||||.|.|++..|++||.|.+...+..|+..|++||+.
T Consensus 540 s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~ 619 (1259)
T KOG0163|consen 540 SYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLV 619 (1259)
T ss_pred chHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHH
Confidence 9999999999999988777777642 358999999999999999999999999999999999999999999
Q ss_pred ccccccchhccC--CC--CCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHH
Q 001433 226 SLFLPLAEESSK--TS--KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRI 301 (1079)
Q Consensus 226 ~lf~~~~~~~~~--~~--~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri 301 (1079)
.||++....+.+ .+ ++-|||++|+.+|..||+.|++|..|||||||||....|++||...++.||.|+|+...+++
T Consensus 620 sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~L 699 (1259)
T KOG0163|consen 620 SLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLEL 699 (1259)
T ss_pred HHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHH
Confidence 999985332221 12 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhhcCCC--CceeccceeeeeccccccchhhhhhhcchhhH
Q 001433 302 SCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1079)
Q Consensus 302 ~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~tkVFlr~~~~~~Le~~r~~~l~~aa~ 379 (1079)
+..|||+|.+|.+.+.-|.-.+|..+. ..|++-.|+.+...+|++ +|+||.|||||+.|-.+..+++...--.....
T Consensus 700 Mq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~ 778 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLE 778 (1259)
T ss_pred HhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHH
Confidence 999999999999999999988887654 479999999999999986 89999999999999999998876655555555
Q ss_pred HHHHHhhhcccchhhhhhhhhhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHHhhhh
Q 001433 380 IIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1079)
Q Consensus 380 ~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~ 447 (1079)
.|++ +-.|+.+.++.+..-++..+-..-- +-.-|..+++++|++.|||++|+++...-.
T Consensus 779 lv~k-Vn~WLv~sRWkk~q~~a~sVIKLkN--------kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 779 LVAK-VNKWLVRSRWKKSQYGALSVIKLKN--------KIIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHH-HHHHHHHhHHHHhhhhhhheeehhh--------HHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 5544 5667777777665443322111000 001133577889999999999998775433
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=6.4e-86 Score=818.95 Aligned_cols=359 Identities=51% Similarity=0.866 Sum_probs=318.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCcccccccccCCcc
Q 001433 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1079)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgvLDi~GFE~ 79 (1079)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ...++||||||||||+
T Consensus 297 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~ 376 (689)
T PF00063_consen 297 GVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFEN 376 (689)
T ss_dssp TS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B--
T ss_pred CCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccc
Confidence 799999999999999999999999999999999999999999999999999999999998765 6789999999999999
Q ss_pred ccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccc-cCcHHHHHHhhcCCCchhHhhHHhhcCCCCChH
Q 001433 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHE 158 (1079)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~ 158 (1079)
|..||||||||||||||||++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||++|++||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~ 456 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDE 456 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HH
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcCCCC----CCCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccch
Q 001433 159 TFAQKLYQTF-KNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1079)
Q Consensus 159 ~~~~kl~~~~-~~~~~~~~p~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1079)
+|++++...+ ++|+.|.+|+ .+...|+|+||||+|+|++.||++||+|.++++++++|+.|+++||+.||+....
T Consensus 457 ~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 457 SFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred HHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccc
Confidence 9999999999 8899999885 3678999999999999999999999999999999999999999999999987542
Q ss_pred h---------------------ccCCCCCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhc
Q 001433 234 E---------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1079)
Q Consensus 234 ~---------------------~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~ 292 (1079)
. .....+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||..+|.+||++
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~ 616 (689)
T PF00063_consen 537 ATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRY 616 (689)
T ss_dssp ---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhh
Confidence 0 0011245899999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhCCCCccChHHHHHHHhhhhcccCCC----CCcHHHHHHHHHhhcCC--CCceeccceeeee
Q 001433 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDG----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLR 359 (1079)
Q Consensus 293 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iG~tkVFlr 359 (1079)
+||+|++++++.|||+|++|.+|++||++|++..... ..++++.|+.||+.+++ ++|++|+||||||
T Consensus 617 ~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 617 SGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp TTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999976532 46899999999999987 5899999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=4.5e-52 Score=508.23 Aligned_cols=456 Identities=30% Similarity=0.416 Sum_probs=380.1
Q ss_pred CCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCcccccccccCCcc
Q 001433 2 CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN--SKSLIGVLDIYGFES 79 (1079)
Q Consensus 2 ~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgvLDi~GFE~ 79 (1079)
++...|.+++|.++.+++||.+..++++++|..+|||+||.||++||.|||.+||..+.++.. ....||||||||||+
T Consensus 360 ~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~ 439 (1062)
T KOG4229|consen 360 IKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFEN 439 (1062)
T ss_pred cCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999976554 368899999999999
Q ss_pred ccCCchhHhhhhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHhhHHhhcCCCCChHH
Q 001433 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1079)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~lLdee~~~~~~~d~~ 159 (1079)
|..|||||+|||||||+||.+|++|||..||+||..|+|+|..|.|.||.+|+|+|..||.||+.+||||+.+|+++|.+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~t 519 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQT 519 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCCCC-CCCCeEEEEcCcceEEecccchhhcchhhhHHHHHHHhhcCCccccccccccchhcc--
Q 001433 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS-- 236 (1079)
Q Consensus 160 ~~~kl~~~~~~~~~~~~p~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-- 236 (1079)
++.|+..+++.+..+..|+. ..+.|+|.||||.|.|++.||++||+|+++.+++.++++|.+.++..++...+....
T Consensus 520 l~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~ 599 (1062)
T KOG4229|consen 520 LLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRW 599 (1062)
T ss_pred HHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcc
Confidence 99999999998877777765 457999999999999999999999999999999999999988877766543110000
Q ss_pred --------------------------------------------------------------C-----------------
Q 001433 237 --------------------------------------------------------------K----------------- 237 (1079)
Q Consensus 237 --------------------------------------------------------------~----------------- 237 (1079)
.
T Consensus 600 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~ 679 (1062)
T KOG4229|consen 600 FELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALE 679 (1062)
T ss_pred hhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhh
Confidence 0
Q ss_pred -------------------------CC--------------C--------------------------------------
Q 001433 238 -------------------------TS--------------K-------------------------------------- 240 (1079)
Q Consensus 238 -------------------------~~--------------~-------------------------------------- 240 (1079)
.+ +
T Consensus 680 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1062)
T KOG4229|consen 680 QGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLP 759 (1062)
T ss_pred hcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhccccc
Confidence 00 0
Q ss_pred ------------CcchHH----------------HHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhc
Q 001433 241 ------------FSSIGS----------------RFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1079)
Q Consensus 241 ------------~~tv~~----------------~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~ 292 (1079)
...++. .+......++..+....|.|++|++-|..+....|+...|..|+++
T Consensus 760 ~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 839 (1062)
T KOG4229|consen 760 RYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSY 839 (1062)
T ss_pred ccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhc
Confidence 000111 1223344467777778899999999998888889999999999999
Q ss_pred cchhhHHHHHhhCCCCccChHHHHHHHhhhhcccCCCCCcHHHHHHHHHhh--cCCCCceeccceeeeeccccccchh-h
Q 001433 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEK--VGLEGYQIGKTKVFLRAGQMADLDA-R 369 (1079)
Q Consensus 293 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~~iG~tkVFlr~~~~~~Le~-~ 369 (1079)
.|+++..++...+|+..+++.+|..-+.+..|.... ......... .+.++++.|.+++|+...-...++. .
T Consensus 840 t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l 913 (1062)
T KOG4229|consen 840 TGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVAL 913 (1062)
T ss_pred hhhhccchheeccccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHH
Confidence 999999999999999999999999999988773221 111122221 2446899999999998766544432 2
Q ss_pred hhhhcchhhHHHHHHhhhcccchhhhhhhhhhhhhhhHHhhhccchhccc-ccchhhhhhHHHHHHHHHHHHHHHhhhhH
Q 001433 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYES-MRREASCLRIQRDLRMYLAKKAYKDMCFS 448 (1079)
Q Consensus 370 r~~~l~~aa~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~-~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a 448 (1079)
..+....-+...|++++....++.|.++..+.+.+| |++++.|+.... .....+|+-+|..|+.+..+..+.-.+.+
T Consensus 914 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 991 (1062)
T KOG4229|consen 914 KDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRS 991 (1062)
T ss_pred hHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhh
Confidence 222222126678999999999999999999999999 888888775542 22345788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 449 AVCIQTGMRGMAARNEL 465 (1079)
Q Consensus 449 ~~~iQ~~~Rg~~aR~~~ 465 (1079)
...+|..+++...++.+
T Consensus 992 ~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 992 FIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hcchhcccccchhhhhH
Confidence 99999988887666554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.94 E-value=1.3e-26 Score=267.02 Aligned_cols=259 Identities=20% Similarity=0.352 Sum_probs=209.2
Q ss_pred HHhhhhcHHHHHHHcc-ccCCCcCCCCchHHHHHHHHhhhcc--hhhhh----hHHHHHHHHHHHHhhhcc-CCCcccch
Q 001433 746 IEHQHENVDALINCVA-KNLGYCNGKPVAAFTIYKCLLHWKS--FEAER----TSVFDRLIQMIGSAIENE-DDNDHMAY 817 (1079)
Q Consensus 746 ~e~~~e~~~~l~~~i~-~~~~~~~~~P~~A~il~~c~r~~~~--~~~e~----~~ll~~i~~~I~~~i~~~-~d~~~l~f 817 (1079)
.|+....++..+..++ .+.+.+.++.+|-|- |..-.|++. +..++ ..||.++++.+..++.+. ++-..|+|
T Consensus 543 i~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaF 621 (1629)
T KOG1892|consen 543 IEFRDSSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAF 621 (1629)
T ss_pred eecccCcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 3566666777777766 455555555555441 333344443 55554 799999999999999988 56669999
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCCCCCCCccchhhhhccccCCCCCchhhhhhhhhhHHhhhhccchHHHHHHHHHH
Q 001433 818 WLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAA 897 (1079)
Q Consensus 818 WLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~qqL~~ 897 (1079)
||+|++++|||++++-..+ .+ .+..+..|..
T Consensus 622 WmANaSEflhfik~Dr~ls--------------------------------~~-----------------~~~aq~vla~ 652 (1629)
T KOG1892|consen 622 WMANASEFLHFIKQDRDLS--------------------------------RI-----------------TLDAQDVLAH 652 (1629)
T ss_pred hhcCHHHHHHHHHhccchh--------------------------------he-----------------ehhHHHHHHH
Confidence 9999999999998841100 11 0122345666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001433 898 YVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFT 977 (1079)
Q Consensus 898 ~~~~iy~~l~~~l~k~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~ 977 (1079)
.++.+|.-|+.++..+|++.+...++.... ..+..++||.+|+..+.+|+.|+|+..|+.|+|+
T Consensus 653 ~vq~aFr~LV~clqsel~~~~~afLden~~----------------~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfs 716 (1629)
T KOG1892|consen 653 LVQMAFRYLVHCLQSELNNYMPAFLDENSL----------------QRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFS 716 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc----------------cCccccchHHHhHHHHHHHHHhccchHHHHHHHH
Confidence 699999999999999999999887764322 2346679999999999999999999999999999
Q ss_pred HHHHhHhHHHHHhhhhc--cCCCCCcchhHHhhchHHHHHHHhhcccccccChHhhhhhHHHHHhHHhhcccCcCCHHHH
Q 001433 978 QTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEI 1055 (1079)
Q Consensus 978 qlf~~ina~lfN~Ll~r--~~~cs~s~g~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~~i 1055 (1079)
|||+|||+.+||+|+.. ..+|+--+|--|++.|..||.||...|.+.++. |||..|+||++||+++|....|+..|
T Consensus 717 qLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l 794 (1629)
T KOG1892|consen 717 QLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL 794 (1629)
T ss_pred HHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHHhh
Confidence 99999999999999998 689999999999999999999999999766665 99999999999999998777788888
Q ss_pred HhCcCCCCCHHHHHHHHh
Q 001433 1056 TNDLCPVSQFFLFVTVCV 1073 (1079)
Q Consensus 1056 ~~~~c~~Ls~~Qi~~il~ 1073 (1079)
...|.+||+.|+++||+
T Consensus 795 -~stCfkLNSLQ~~alLq 811 (1629)
T KOG1892|consen 795 -NSTCFKLNSLQLQALLQ 811 (1629)
T ss_pred -ccchhhcchHHHHHHHh
Confidence 78999999999999997
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.92 E-value=2.7e-26 Score=215.80 Aligned_cols=98 Identities=32% Similarity=0.554 Sum_probs=84.9
Q ss_pred HHHHHHHHhHhHHHHHhhhhccCCCCCcchhHHhhchHHHHHHHhhcccccccChHhhhhhHHHHHhHHhhcccCcCCHH
Q 001433 974 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYD 1053 (1079)
Q Consensus 974 Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~g~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~ 1053 (1079)
|+|+|+|+|||+.+||+||.|+++|+|++|+||||||+.||+||+++|.. .+ ++++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~-~~-~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLE-EA-AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTST-TH--HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccc-hh-HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 89999999999999999999999999999999999999999999999932 23 78999999999999999776677776
Q ss_pred HHHhCcCCCCCHHHHHHHHhh
Q 001433 1054 EITNDLCPVSQFFLFVTVCVL 1074 (1079)
Q Consensus 1054 ~i~~~~c~~Ls~~Qi~~il~~ 1074 (1079)
.+ +++||+|||.||++||++
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~ 98 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSN 98 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCC
T ss_pred HH-HHHcccCCHHHHHHHHHh
Confidence 77 799999999999999975
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.25 E-value=9.4e-09 Score=134.75 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=109.5
Q ss_pred hhhchHHHHhHHHHhhhhhhHhhhhhcCCccccccccCcHHHHHHhhcCCCchhHh--hHHhhcCCCCChHHHHHHHHHH
Q 001433 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIAL--LDEACMFPRSTHETFAQKLYQT 167 (1079)
Q Consensus 90 iNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~idli~~~~~Gil~l--Ldee~~~~~~~d~~~~~kl~~~ 167 (1079)
.+++-+-+....+..+|.. ...+...+++|+ .+...+|.+++-...-||.+ ...=|. .--.+||.+-
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~nSFEQLci------NytnEkLQqf 481 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEFNSFEQLCI------NYTNEKLQQF 481 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCcCCHHHHHH------HHHHHHHHhh
Confidence 7888888888888888854 677888888886 45555666655433222222 000010 0012344443
Q ss_pred hcCCCCcCCCC----CCCCCeEEEEcCcceEEecccchhhcchhh--hHHHHHHHhhcCCccccccccccchhccCCCCC
Q 001433 168 FKNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYV--VAEHQALLSASKCSFVSSLFLPLAEESSKTSKF 241 (1079)
Q Consensus 168 ~~~~~~~~~p~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~--~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~ 241 (1079)
| +|.-|+.-. --.-.++.-||+-+. =.+.+-|+|=...+ -++-.-+..+|...|+..|+.... .+.++|
T Consensus 482 F-nh~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~~~f 556 (1930)
T KOG0161|consen 482 F-NHHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKHPKF 556 (1930)
T ss_pred h-cchhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccCccc
Confidence 3 344443211 012356667773332 12334444422211 112122233445555555544321 112222
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccchhhhHHhhccchhhHHHHHhhCCCCccChHHHHHHHhh
Q 001433 242 SSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGI 321 (1079)
Q Consensus 242 ~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 321 (1079)
.... ......-+....-+.+ |+|.-+|-..++..-....|+.+|++++ .+.|...-.| +..+..+..++..
T Consensus 557 ~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~ 627 (1930)
T KOG0161|consen 557 QKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA 627 (1930)
T ss_pred cCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh
Confidence 2111 2233333433444444 9999999988888888899999999999 8887776655 5555555555544
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.35 E-value=1.8e-06 Score=105.87 Aligned_cols=85 Identities=39% Similarity=0.522 Sum_probs=80.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 001433 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCA 503 (1079)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~ 503 (1079)
.+++.||+.+|+|..|+.|..+|.+++.+|+.+||..+|+ ... +..||+.||+.||++..|++|.....+++.+|+.
T Consensus 674 ~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 674 AAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSG 750 (862)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999 233 7789999999999999999999999999999999
Q ss_pred HhHHHHHH
Q 001433 504 WRGKVARR 511 (1079)
Q Consensus 504 ~R~~~aRr 511 (1079)
+|++.+|.
T Consensus 751 ~r~~~~r~ 758 (862)
T KOG0160|consen 751 VRAMLARN 758 (862)
T ss_pred HHHHHhcc
Confidence 99999998
No 27
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.25 E-value=1.4e-06 Score=106.65 Aligned_cols=128 Identities=26% Similarity=0.332 Sum_probs=79.0
Q ss_pred hcchhhHHHHHHhhhcccchhhhhhhhhhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHH
Q 001433 373 VLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCI 452 (1079)
Q Consensus 373 ~l~~aa~~IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~i 452 (1079)
....++..||.++|+|..|+.|..++.-++.||+++||+..|+.|.++- |--...++.|. ++..+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~-----------wSv~~lek~~l----rwR~k 872 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKIT-----------WSVGVLEKLIL----RWRRK 872 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheec-----------hhhhHHHHHHH----HHHHh
Confidence 3456788999999999999999999999999999999999988887654 11112222222 22234
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Q 001433 453 QTGMRGMAARNELRFRRQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLK 517 (1079)
Q Consensus 453 Q~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r--~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~ 517 (1079)
|..+||+..|...+... .|++.||...|.|..- ..|.++.++++.||+.+|...++.+++++.
T Consensus 873 ~~g~Rgfk~~~~~e~~~--~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 873 GKGFRGFKGRALFEEQE--TAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhhcccccccchhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44555555444433222 2555555555555544 445555566666666666665555554443
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.11 E-value=0.00067 Score=86.36 Aligned_cols=88 Identities=23% Similarity=0.166 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH-H
Q 001433 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ-C 502 (1079)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ-~ 502 (1079)
.+++.||+.|||+..|++|.+....+..+|...+|+..|+....-.-..++..+|..|+....|..|......+..+| .
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~ 825 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888877788888888888777666555555677788888888888888887777777777 4
Q ss_pred hHhHHHHHH
Q 001433 503 AWRGKVARR 511 (1079)
Q Consensus 503 ~~R~~~aRr 511 (1079)
.+|....+.
T Consensus 826 i~~~~~~~~ 834 (1463)
T COG5022 826 IKREKKLRE 834 (1463)
T ss_pred HHHHHHHhH
Confidence 444444443
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.03 E-value=0.0077 Score=72.70 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 520 ARETGALQAAKNKLEKQVEELTWRLQ---LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1079)
Q Consensus 520 a~~~~~L~~~~~~LE~k~~el~~rl~---~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~ 584 (1079)
..+...+++.+.+....+.|....++ +++++..+-.+....|.+.+++++++|+..++-+.++++
T Consensus 289 R~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555554444 345555555556667888888888888888877776554
No 30
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.78 E-value=4.5e-05 Score=93.88 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=95.5
Q ss_pred hhhHHHHHHhhhcccchhh-hhhhh-----------hhhhhhhHHhhhccchhcccccchhhhhhHHHHHHHHHHHHHHH
Q 001433 376 RSASIIQRKVRSYLSRKNY-IMLRR-----------SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYK 443 (1079)
Q Consensus 376 ~aa~~IQ~~~R~~l~Rk~y-~~~r~-----------a~i~IQ~~~Rg~lar~~~~~~r~~~AAi~IQ~~~R~~~~rk~y~ 443 (1079)
.+|..||..+|...-++.- ..+.. ..+.++...+ .+...+...||..||.++|+|..|+.|.
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~------~~~~r~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFS------MCDDRSDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchh------cCccccchhHHHHhhhhhhhHHhhhhhc
Confidence 5677889998876555332 22211 1222333333 2233445578999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHH
Q 001433 444 DMCFSAVCIQTGMRGMAARNELRFR--------RQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVAR 510 (1079)
Q Consensus 444 ~~r~a~~~iQ~~~Rg~~aR~~~~~~--------~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aR 510 (1079)
.++.-++.||+.+||+..|+.|... +-..++..+|+.+|++..|+.+.+...++..+|...|.+..-
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 9999999999999999999998432 234577889999999999999988888889999888776443
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0066 Score=72.08 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
...|+-+...|...+.+|..++.+.+-.+...+.+.+.+.+..+-...++.+++..++++++.+..|--|.
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33333333444444444444333333333333333333333333344444455555555555444443333
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.61 E-value=0.021 Score=70.96 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001433 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1079)
Q Consensus 565 L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee 596 (1079)
++.+..+||.++..+..++....++...+..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555554444433
No 33
>PRK11637 AmiB activator; Provisional
Probab=97.38 E-value=0.05 Score=64.76 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 621 Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
++....+++..+.+++.+..+++....+....+..++......+.++..++....+|+..+..+
T Consensus 189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444443333344444444444444555555555554444444
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.41 Score=60.53 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=7.2
Q ss_pred HHHHHHHhhcCCC
Q 001433 335 TACKRLLEKVGLE 347 (1079)
Q Consensus 335 ~~~~~il~~~~~~ 347 (1079)
..+..+|...|+|
T Consensus 209 ~~V~~lLk~~gID 221 (1293)
T KOG0996|consen 209 KDVTKLLKSHGID 221 (1293)
T ss_pred HHHHHHHHhcCCC
Confidence 3456666665543
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.38 E-value=0.036 Score=55.07 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1079)
Q Consensus 524 ~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~ 584 (1079)
.........++.++.++..+.. .+..++..|...+..++.+++.++..+.
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777766666 5667888888888888888888877764
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.26 E-value=0.58 Score=63.27 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHhH
Q 001433 972 VQKIFTQTFSYINV 985 (1079)
Q Consensus 972 ~~Q~f~qlf~~ina 985 (1079)
..+.|...|.-|+.
T Consensus 1016 ~~~~f~~~f~~~~~ 1029 (1164)
T TIGR02169 1016 KREVFMEAFEAINE 1029 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.23 E-value=0.08 Score=65.89 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
...++++-++..+...+.|+..|+++
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666677777788888888875
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.20 E-value=0.48 Score=64.08 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.++.++..++..+..++.++..+++
T Consensus 417 ~l~~~~~~~~~~~~~l~~~~~~l~~ 441 (1164)
T TIGR02169 417 RLSEELADLNAAIAGIEAKINELEE 441 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.18 E-value=1.3 Score=56.14 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.+..+..+.+..+..|..+++.++..+..+..+..+...++...++.....+.++..+...++.-..++..|+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444444444444555555555555555555555554
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.15 E-value=0.15 Score=54.56 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~ 659 (1079)
......|+.+...++.....++.++.++.++..++++....+..++...+..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777766666666666666666666666555555554444444433
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.066 Score=64.03 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
.++..+..|+.+++.|..++.++..++.+++-.+......++...+.++..-.++.+|+.+|.++++.+..
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555455444444444444444444444444444444444444444444444433
No 42
>PRK11637 AmiB activator; Provisional
Probab=97.12 E-value=0.16 Score=60.41 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+......|+....+++.++.+++....+++....++.....+.+..+..|+.+....+..+..|+.+...++.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444444433443444444444444444444444444444443
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.11 E-value=0.51 Score=63.70 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 649 l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+...+.....++...+.++.+++.++..++.+++.+++
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555566666666666666666655555
No 44
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.99 E-value=0.0044 Score=73.12 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=60.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---------
Q 001433 422 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK--------- 492 (1079)
Q Consensus 422 ~~~AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~--------- 492 (1079)
...-++.||+.||||.+|.+|++++.+++.|+ +||.+..+ ..+..||+.+|++..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~ 764 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPL 764 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCch
Confidence 34578999999999999999999999999998 88754332 455678999999999998855
Q ss_pred -HhHHHHHHHHhHhHHHHHHHH
Q 001433 493 -LKKAAITTQCAWRGKVARREL 513 (1079)
Q Consensus 493 -~~~a~v~iQ~~~R~~~aRr~~ 513 (1079)
++.+...+|..+-+|.+.+-+
T Consensus 765 ~Lr~~~~~L~~lf~rwra~~~~ 786 (1001)
T KOG0164|consen 765 VLREFEELLRELFIRWRAWQIL 786 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444333
No 45
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.95 E-value=0.00084 Score=43.34 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 001433 424 ASCLRIQRDLRMYLAKKAYK 443 (1079)
Q Consensus 424 ~AAi~IQ~~~R~~~~rk~y~ 443 (1079)
+||+.||++||||.+|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 47788888888888888764
No 46
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.94 E-value=0.33 Score=50.94 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHh
Q 001433 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR---LEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~---l~~~i~~Le~e~~~lrqq 687 (1079)
.++...+..|.+-+.+|+....++|..........++..++|..+-+++.-|+.++.+ +-+.+.+|++|-..|+|+
T Consensus 101 sqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 101 SQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444455555555555555445444433 334555566665555554
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.41 Score=59.50 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=26.0
Q ss_pred hhchHHHHhHHHHhhhhhhHhhhhhcCCccccccc-cCcHHHHHHhhcCCCchhHhhHHhh
Q 001433 91 NLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEAC 150 (1079)
Q Consensus 91 NyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~idli~~~~~Gil~lLdee~ 150 (1079)
+-.|-++|++|..- |++.....| .--..+--.+.-||.-|++++.|.+
T Consensus 121 ~a~~~~vq~lF~SV------------qLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAA 169 (1174)
T KOG0933|consen 121 LAQNSKVQDLFCSV------------QLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAA 169 (1174)
T ss_pred eCchhHHHHHHHHh------------cccCCCCceEEecccchhhhcCCcHHHHHHHHHhh
Confidence 35677788777542 444333333 1111233344456778888888754
No 48
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.88 E-value=0.00057 Score=86.68 Aligned_cols=267 Identities=16% Similarity=0.117 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCCCCCcccch-hhhHHhhccchhhHHHHHhhCCCCccChHHHHHHHhhh
Q 001433 244 IGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENK-NVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGIL 322 (1079)
Q Consensus 244 v~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 322 (1079)
++..++-++......|.+..+||.|||+||..-.+..++.. .+..++..-|...+......|+..+..|.+++.+++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 34555567777788888899999999999999999999988 89999999999999999999999999999988766633
Q ss_pred hcccCCCCCcHHHHHHHHHhhcCCCCceeccceeeeeccccccchhhhhhhcchhhHHHHHHhhhcccchhh--------
Q 001433 323 ASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNY-------- 394 (1079)
Q Consensus 323 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~tkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~y-------- 394 (1079)
.-.......-....|..++...+.+.+..+.+.++.+.-....+.-.+.+...+ .+..|...+.|..+.++
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~-~~l~~~~kk~~~~~~~~~~~~~~k~ 802 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQ-LRLHQHKKKAFPQPLRSPQVRKSKL 802 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhh-HHHHHhhccccCccccccchhhccc
Confidence 211111111235567777777777788888888877664333332221111111 12222222233222221
Q ss_pred -------------------hhh----hhhhhhhhhHHhhhccchhccc--------------------------------
Q 001433 395 -------------------IML----RRSAIHIQAACRGQLARTVYES-------------------------------- 419 (1079)
Q Consensus 395 -------------------~~~----r~a~i~IQ~~~Rg~lar~~~~~-------------------------------- 419 (1079)
... -...+.+|..|-|...+.....
T Consensus 803 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~ 882 (1062)
T KOG4229|consen 803 ESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEF 882 (1062)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhe
Confidence 111 1233444444444222211110
Q ss_pred ------------------------------ccchhh---hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001433 420 ------------------------------MRREAS---CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR 466 (1079)
Q Consensus 420 ------------------------------~r~~~A---Ai~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~~aR~~~~ 466 (1079)
+..+.. +...|++++....++.+..+..+.+.+| +++...|+...
T Consensus 883 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~ 960 (1062)
T KOG4229|consen 883 STLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCP 960 (1062)
T ss_pred eecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCc
Confidence 000001 2345666677777777777777777777 66666665433
Q ss_pred -HHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Q 001433 467 -FRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARREL 513 (1079)
Q Consensus 467 -~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~ 513 (1079)
......++..+|..|+.+..+..+...++..+.+|..+++..-+..+
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 961 VAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred chhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 22334566777888888888888877777777777777766554443
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.88 E-value=2 Score=58.09 Aligned_cols=18 Identities=33% Similarity=0.209 Sum_probs=10.7
Q ss_pred CCcchhHHhhchHHHHHH
Q 001433 999 TFSNGEYVKAGLAELELW 1016 (1079)
Q Consensus 999 s~s~g~qIr~nls~Le~W 1016 (1079)
+.|.|++-+..|..+-.|
T Consensus 1089 ~lS~g~~~~~~l~~~~~~ 1106 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAI 1106 (1179)
T ss_pred ccCccHHHHHHHHHHHHH
Confidence 446666666666665443
No 50
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.85 E-value=0.46 Score=64.22 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.2
Q ss_pred HHHHhhcC
Q 001433 338 KRLLEKVG 345 (1079)
Q Consensus 338 ~~il~~~~ 345 (1079)
..+|..++
T Consensus 125 ~~~l~~~~ 132 (1179)
T TIGR02168 125 QDLFLDTG 132 (1179)
T ss_pred HHHHhccC
Confidence 34444443
No 51
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.5 Score=55.81 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=4.6
Q ss_pred HHHHHHHhhh
Q 001433 1066 FLFVTVCVLG 1075 (1079)
Q Consensus 1066 ~Qi~~il~~~ 1075 (1079)
.-+|+++|||
T Consensus 1152 kemYQmIT~G 1161 (1293)
T KOG0996|consen 1152 KEMYQMITLG 1161 (1293)
T ss_pred HHHHHHHhcC
Confidence 3444444444
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.79 E-value=2.8 Score=53.40 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHhHHHHHhhhhccCCC
Q 001433 973 QKIFTQTFSYINVQLFNSLLLRRECC 998 (1079)
Q Consensus 973 ~Q~f~qlf~~ina~lfN~Ll~r~~~c 998 (1079)
-|=|.-...+-...-|+.++-.|.+|
T Consensus 932 ~qk~r~~~~~~~~~~F~~~l~~R~~s 957 (1074)
T KOG0250|consen 932 YQKFRKLLTRRATEEFDALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccC
Confidence 34444455555566677777766655
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.77 E-value=1.4 Score=59.18 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=7.2
Q ss_pred cchhhHHHHHhhCCC
Q 001433 293 GGVMEAIRISCAGYP 307 (1079)
Q Consensus 293 ~gvle~iri~~~Gyp 307 (1079)
.|+..+......|+|
T Consensus 501 ~~~~~~~~~~~~~~~ 515 (1163)
T COG1196 501 QGVRAVLEALESGLP 515 (1163)
T ss_pred hhHHHHHHHHhccCC
Confidence 344445555555443
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.75 E-value=2.5 Score=52.25 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001433 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1079)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~~ 689 (1079)
...++.++++.+++.+-....++...++.+..|.+.+..++.+..
T Consensus 505 ~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 505 ARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566666677777777777777777777888888777776543
No 55
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=1.8 Score=54.17 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=7.2
Q ss_pred Cceeccceeee
Q 001433 348 GYQIGKTKVFL 358 (1079)
Q Consensus 348 ~~~iG~tkVFl 358 (1079)
.|.||.|-|+=
T Consensus 619 efvFG~tlVc~ 629 (1174)
T KOG0933|consen 619 EFVFGSTLVCD 629 (1174)
T ss_pred HHHhCceEEec
Confidence 46777776664
No 56
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.70 E-value=0.77 Score=47.03 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 653 ALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 653 l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
++++...+..+..-..+|+.++.+|++.+
T Consensus 160 i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 160 IEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555554444
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.67 E-value=0.24 Score=58.90 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001433 525 ALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 525 ~L~~~~~~LE~k~~el~~rl~ 545 (1079)
.|+.....|+.++.+|+..|.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444
No 58
>PRK02224 chromosome segregation protein; Provisional
Probab=96.62 E-value=0.14 Score=66.90 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 624 ~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+.++..++.+++.++.+++ ...++..++.+.+..+..++.++..+++....+.+++..++.
T Consensus 573 ~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~ 634 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE 634 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333 233333333333333333333333333333333333433333
No 59
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.62 E-value=0.98 Score=52.12 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 641 e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
+-++...++...+...++++.+|..+-.+|+..|.+++.+..
T Consensus 207 E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 207 ERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333444444555566666666666666666666664443
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.60 E-value=4.1 Score=54.86 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=5.4
Q ss_pred HHHHHHHHHhHhH
Q 001433 973 QKIFTQTFSYINV 985 (1079)
Q Consensus 973 ~Q~f~qlf~~ina 985 (1079)
...|...|.-||.
T Consensus 1008 ~~~f~~~f~~In~ 1020 (1163)
T COG1196 1008 RERFKETFDKINE 1020 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.60 E-value=0.69 Score=50.31 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.+..+..++.+++......+..+..|+..|..|+.++...+
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333
No 62
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.56 E-value=0.088 Score=57.26 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001433 560 QENAKLQSALQEMQLQFKESK 580 (1079)
Q Consensus 560 ~e~~~L~~~~~~le~~l~~~~ 580 (1079)
.++..|...+..++..++..+
T Consensus 36 ~e~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444333
No 63
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.47 E-value=0.035 Score=71.05 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----
Q 001433 428 RIQRDLRMYLAKKAYKD-------MCFSAVCIQTGMRGMAA--RNELRFRRQTRASILIQSHCRKYLARLHYMKLK---- 494 (1079)
Q Consensus 428 ~IQ~~~R~~~~rk~y~~-------~r~a~~~iQ~~~Rg~~a--R~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~---- 494 (1079)
++|+..||+..|..+.. .-+.+..+|+.|||+.. -+..........++.+|++.||+..|+.|.+..
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~ 619 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFK 619 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34666777666655432 23356677777777763 222223334456677777777777777665442
Q ss_pred ---HHHHHHHHhHhHHHHHHHHHHHHH
Q 001433 495 ---KAAITTQCAWRGKVARRELRKLKM 518 (1079)
Q Consensus 495 ---~a~v~iQ~~~R~~~aRr~~~~l~~ 518 (1079)
.+++.+|+.+|....|..++.+..
T Consensus 620 ~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 620 DNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 566777777777777777776653
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.39 E-value=1.1 Score=45.92 Aligned_cols=80 Identities=23% Similarity=0.232 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEET-------SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~-------~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
.++..|+.++.++..+.+.+.++..++-.+...+ +.........+.+....+..+...+.+...-..+|+.|+
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444433322222 222222333344445555667777777777777888888
Q ss_pred HHHHHhh
Q 001433 682 QILRQQS 688 (1079)
Q Consensus 682 ~~lrqq~ 688 (1079)
.+|+++.
T Consensus 182 s~LEeql 188 (193)
T PF14662_consen 182 SRLEEQL 188 (193)
T ss_pred HHHHHHH
Confidence 8887754
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.38 E-value=0.55 Score=50.38 Aligned_cols=8 Identities=0% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001433 569 LQEMQLQF 576 (1079)
Q Consensus 569 ~~~le~~l 576 (1079)
+..++.++
T Consensus 61 v~~~e~ei 68 (239)
T COG1579 61 VSQLESEI 68 (239)
T ss_pred HHHHHHHH
Confidence 33333333
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=96.35 E-value=1.8 Score=56.64 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=11.7
Q ss_pred CCCcchhHHhhchHH----HHHHHh
Q 001433 998 CTFSNGEYVKAGLAE----LELWCC 1018 (1079)
Q Consensus 998 cs~s~g~qIr~nls~----Le~W~~ 1018 (1079)
-..|.|++..++|+. ...|+.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~ 804 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAE 804 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhh
Confidence 355777776554333 345665
No 67
>PRK09039 hypothetical protein; Validated
Probab=96.34 E-value=0.54 Score=53.97 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRV 552 (1079)
Q Consensus 523 ~~~L~~~~~~LE~k~~el~~rl~~E~~~~~ 552 (1079)
+..+.+...+|+.++.+|..-+.++.....
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~ 77 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQ 77 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666677777777666665554443
No 68
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.31 E-value=0.0052 Score=39.67 Aligned_cols=19 Identities=58% Similarity=0.833 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001433 472 RASILIQSHCRKYLARLHY 490 (1079)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~ 490 (1079)
.+++.||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666665
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.30 E-value=0.81 Score=52.27 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHH
Q 001433 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL----EEKVSDMETENQ 682 (1079)
Q Consensus 607 ~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l----~~~i~~Le~e~~ 682 (1079)
+.+++..+..++..++.++.+.++.+.+++.++.+++...+++..+..+++..+.++++..+.- ..++.+|+.+.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3556666666777777777766666666666666666666666655555555555555444432 246777777777
Q ss_pred HHHHh
Q 001433 683 ILRQQ 687 (1079)
Q Consensus 683 ~lrqq 687 (1079)
.|+..
T Consensus 287 ~Le~~ 291 (325)
T PF08317_consen 287 ALEKL 291 (325)
T ss_pred HHHHH
Confidence 77763
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.20 E-value=0.54 Score=58.14 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
......+...+..++.++..+...+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.19 E-value=3.7 Score=51.53 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKF--EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~--~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~ 679 (1079)
.+.+.+|...+.-|.++-+-|++++..++.+. ..++.++-.+.+++.+++......+.+.++|.+++..|+.
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555555555444433 3334444444444444444444444444444444333333
No 72
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.18 E-value=0.074 Score=68.20 Aligned_cols=114 Identities=26% Similarity=0.273 Sum_probs=82.0
Q ss_pred HHHHhhhcccchhh----hhh-hhhhhhhhhHHhhhccchhccc----cc-chhhhhhHHHHHHHHHH----HHHHHhhh
Q 001433 381 IQRKVRSYLSRKNY----IML-RRSAIHIQAACRGQLARTVYES----MR-REASCLRIQRDLRMYLA----KKAYKDMC 446 (1079)
Q Consensus 381 IQ~~~R~~l~Rk~y----~~~-r~a~i~IQ~~~Rg~lar~~~~~----~r-~~~AAi~IQ~~~R~~~~----rk~y~~~r 446 (1079)
.|+.+|++..|..- ... ..-...+|+.+||+..|..++. ++ ..-....||+.|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 56667776666531 111 2223445999999988766543 22 33467889999999984 23344556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHh
Q 001433 447 FSAVCIQTGMRGMAARNELRFRR-----QTRASILIQSHCRKYLARLHYMKLK 494 (1079)
Q Consensus 447 ~a~~~iQ~~~Rg~~aR~~~~~~~-----~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1079)
.-++.+|++.||+++|+.+.... ...+++.||++.|+...|..|..+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 78999999999999998875443 3468889999999999999998875
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.14 E-value=1 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
..+.++..++.+...++.++..++..
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.05 E-value=9.7 Score=51.53 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=14.0
Q ss_pred HHHHhhhcccchhhhhhhhhhhhhhhHHhhh
Q 001433 381 IQRKVRSYLSRKNYIMLRRSAIHIQAACRGQ 411 (1079)
Q Consensus 381 IQ~~~R~~l~Rk~y~~~r~a~i~IQ~~~Rg~ 411 (1079)
|..|+|-.-.-..+..++..+..++..++..
T Consensus 228 i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 228 IDDWLRDIRASQGFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333334444555555555554443
No 75
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.00 E-value=3.9 Score=49.57 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 001433 428 RIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1079)
Q Consensus 428 ~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1079)
.|++ +--|+.+.+|.+...++..+-.. +.... -+.+++.++|++.|||++|+++....
T Consensus 779 lv~k-Vn~WLv~sRWkk~q~~a~sVIKL------kNkI~--yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 779 LVAK-VNKWLVRSRWKKSQYGALSVIKL------KNKII--YRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHH-HHHHHHHhHHHHhhhhhhheeeh------hhHHH--HHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 3444 67788888887765543322111 11111 12356778999999999998886654
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.99 E-value=6.5 Score=49.95 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.+++.+...-+..+++...++..|+.+++...
T Consensus 1713 ~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1713 KDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 33343333344444444555555555554443
No 77
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.92 E-value=3.2 Score=45.07 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001433 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1079)
Q Consensus 656 ~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~~ 689 (1079)
..+.+....+.+++++++|..|+.|.+.|+.+..
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566777888888888888888888887654
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=95.91 E-value=0.71 Score=60.44 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 651 ~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
..+..++..+..+..++..++..+..++.++..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444333
No 79
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.91 E-value=3.5 Score=51.05 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=8.6
Q ss_pred CCCCCHHHHHH
Q 001433 1060 CPVSQFFLFVT 1070 (1079)
Q Consensus 1060 c~~Ls~~Qi~~ 1070 (1079)
+..||+.||.+
T Consensus 934 FS~ls~h~~K~ 944 (980)
T KOG0980|consen 934 FSSLSLHQLKT 944 (980)
T ss_pred cccccHHHHHH
Confidence 58888888864
No 80
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.81 E-value=3 Score=43.71 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
.++|......++..+++....+..++..+.-..+ ....++.....+...++.++..+.++|..|...+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENK---SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444443322211 1222233334444444444444444444444433
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.75 E-value=0.82 Score=54.55 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
....+++.+..+|+.++++++.++.+.++...............+.+++.++..+...++.+++++..|..|+..++
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34556666777777777777777776666655555555555555544444444444444444444444444443333
No 82
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.74 E-value=6.7 Score=47.20 Aligned_cols=14 Identities=50% Similarity=0.482 Sum_probs=10.6
Q ss_pred CCcccccccccCCc
Q 001433 65 SKSLIGVLDIYGFE 78 (1079)
Q Consensus 65 ~~~~IgvLDi~GFE 78 (1079)
..+.+|+|||-|=+
T Consensus 8 k~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 8 KVSLGGFLDIQGAV 21 (961)
T ss_pred hhhhcccccccccc
Confidence 34678999998865
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.69 E-value=1.8 Score=58.61 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 645 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
......+++.+.+.++..++.++..++..++.++.+...+
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l 482 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.68 E-value=6.6 Score=48.79 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 001433 247 RFKQQLQQLLETLSSSEP 264 (1079)
Q Consensus 247 ~f~~~l~~Lm~~l~~t~~ 264 (1079)
.|-.-+..+|-.|.++-|
T Consensus 200 ~lY~y~vkmlfkLHs~vp 217 (980)
T KOG0980|consen 200 GLYDYLVKMLFKLHSQVP 217 (980)
T ss_pred hHHHHHHHHHHHHHcCCC
Confidence 344445566666665544
No 85
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.65 E-value=0.0095 Score=40.67 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 001433 423 EASCLRIQRDLRMYLAKKAYK 443 (1079)
Q Consensus 423 ~~AAi~IQ~~~R~~~~rk~y~ 443 (1079)
..+|+.||++||||.+|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357888888888888888873
No 86
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.64 E-value=2.7 Score=47.75 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=6.6
Q ss_pred HHhHHHHHHHHHHhh
Q 001433 674 VSDMETENQILRQQS 688 (1079)
Q Consensus 674 i~~Le~e~~~lrqq~ 688 (1079)
..+|+.|.+.|+|.+
T Consensus 405 e~eleqevkrLrq~n 419 (502)
T KOG0982|consen 405 EIELEQEVKRLRQPN 419 (502)
T ss_pred HHHHHHHHHHhcccc
Confidence 334444444444433
No 87
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.64 E-value=2.6 Score=48.44 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
....+.+.-.|+++..+-+.++-..||+
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqk 514 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQK 514 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344455555555555555555555553
No 88
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.55 E-value=2.6 Score=52.18 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001433 619 EKLKTLVSSLEKKIDETEK 637 (1079)
Q Consensus 619 ~~Le~~l~~l~~~l~ele~ 637 (1079)
..+++.+.+++.++..++.
T Consensus 302 ~~l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDT 320 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334433333333
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.53 E-value=6.1 Score=47.45 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA----ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 616 ~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~----~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.|...+...+..|+.++.++|.....+++....+.-++.+. +..+...+.++..|++++..+-.|++.|-.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666666666666666666666666666665555443 445566677777777777777777766654
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.48 E-value=5.7 Score=48.49 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA 656 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~ 656 (1079)
.++.++|+++.+.+......+++.++-.+..+..+..+-.++.++++++
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444444444444444444443334444444333
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=7.9 Score=46.12 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHHHHHhHhHHHHH
Q 001433 488 LHYMKLKKAAITTQCAWRGKVAR 510 (1079)
Q Consensus 488 ~~~~~~~~a~v~iQ~~~R~~~aR 510 (1079)
..+..++..+...|+++-++.-+
T Consensus 266 e~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 266 EKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 33444444455555554444433
No 92
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.44 E-value=3.6 Score=45.64 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHHHH
Q 001433 673 KVSDMETENQILRQ 686 (1079)
Q Consensus 673 ~i~~Le~e~~~lrq 686 (1079)
++..|+.++..|+.
T Consensus 186 qm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 186 QMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555544
No 93
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=9.5 Score=48.57 Aligned_cols=35 Identities=3% Similarity=-0.016 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001433 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1079)
Q Consensus 425 AAi~IQ~~~R~~~~rk~y~~~r~a~~~iQ~~~Rg~ 459 (1079)
++..-|..|..|..-+.-.....-+...++-.+..
T Consensus 212 ~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~ 246 (1141)
T KOG0018|consen 212 KAQKEQFLWELFHVEACIEKANDELSRLNAEIPKL 246 (1141)
T ss_pred HHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHH
Confidence 45555556666655554444443343444433333
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.35 E-value=0.73 Score=50.99 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 001433 677 METENQILR 685 (1079)
Q Consensus 677 Le~e~~~lr 685 (1079)
.++|++.+|
T Consensus 295 aQEElk~lR 303 (306)
T PF04849_consen 295 AQEELKTLR 303 (306)
T ss_pred HHHHHHHhh
Confidence 344444443
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=5.7 Score=47.29 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=5.6
Q ss_pred HHHHHHHhhhh
Q 001433 313 DEFVDRFGILA 323 (1079)
Q Consensus 313 ~~F~~ry~~l~ 323 (1079)
.+|..-|..|.
T Consensus 103 KdF~~iFkfLY 113 (581)
T KOG0995|consen 103 KDFIAIFKFLY 113 (581)
T ss_pred ccHHHHHHHHH
Confidence 35665555444
No 96
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=1.4 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Q 001433 666 AMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 666 e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
+.+.++-+|.+|+++.+-|.+|.
T Consensus 195 EyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777777666653
No 97
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=2.6 Score=57.59 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=3.3
Q ss_pred CCCcccch
Q 001433 810 DDNDHMAY 817 (1079)
Q Consensus 810 ~d~~~l~f 817 (1079)
.+++.+.+
T Consensus 1157 ~~~~~i~~ 1164 (1311)
T TIGR00606 1157 QDIEYIEI 1164 (1311)
T ss_pred cHHHHhhc
Confidence 34444444
No 98
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.23 E-value=2.8 Score=52.46 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHhccCCCCCCCcccccc---cccCCccccCCchhHh
Q 001433 48 FDWLVEKINNSIGQDPNSKSLIGVL---DIYGFESFKTNSFEQF 88 (1079)
Q Consensus 48 F~wiV~~iN~~l~~~~~~~~~IgvL---Di~GFE~f~~Nsfeql 88 (1079)
|.-+|.++=....-. ..-.||+| |+-|=+.+..|+-+++
T Consensus 4 ~~~~vR~~ke~~ee~--lgqli~~lpd~~~lg~~p~s~ng~e~i 45 (1195)
T KOG4643|consen 4 FECVVRNMKETDEEG--LGQLIIELPDDDMLGSTPSSSNGEEAI 45 (1195)
T ss_pred HHHHHHHHHHHHHHh--ccceeEecCchhhhccCccccchHHHH
Confidence 444555555443211 11224444 4667777888887765
No 99
>PRK03918 chromosome segregation protein; Provisional
Probab=95.19 E-value=6.3 Score=51.66 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=10.5
Q ss_pred CCCCCcchhHHhhchHH
Q 001433 996 ECCTFSNGEYVKAGLAE 1012 (1079)
Q Consensus 996 ~~cs~s~g~qIr~nls~ 1012 (1079)
..-..|.|++.+.+|+.
T Consensus 785 ~~~~lS~G~~~~~~la~ 801 (880)
T PRK03918 785 PLTFLSGGERIALGLAF 801 (880)
T ss_pred ChhhCCHhHHHHHHHHH
Confidence 34556777777666653
No 100
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.11 E-value=6.2 Score=43.49 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 635 le~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.|+.+.+...+.+-+..+++..++..+.+.+++..|++-+..+|.....++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 4445556666666666677777777777888888888888888888877765
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.11 E-value=5.5 Score=44.31 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 615 ~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
..+....++++..|..++.+++.+....--+.+++...+......-..|..++.+++++-.+...-++..+.
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555566666655555566666666555555556666666666666555555544444
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.07 E-value=4.6 Score=45.63 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHh
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETENQILRQQ 687 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~----~~i~~Le~e~~~lrqq 687 (1079)
.+..+++.+..++.....++.+++.++.++....++...+..+.+..+.+++..+++-+ .++.+|+.+.+.+++.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444333333333333333333333333333322211 2666677777777764
No 103
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=6.5 Score=42.84 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 522 ETGALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 522 ~~~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
++..+.+....+++++..|...++
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~ 62 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIE 62 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 104
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.02 E-value=21 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001433 429 IQRDLRMYLAKKAYKDMCFSAVCIQTG 455 (1079)
Q Consensus 429 IQ~~~R~~~~rk~y~~~r~a~~~iQ~~ 455 (1079)
|..|+|-......+..+++.+..++..
T Consensus 228 i~~W~~~~~~~~~~~~~r~~~~~l~~~ 254 (1201)
T PF12128_consen 228 IDDWLRDIRASQGFEKVRPEFDKLQQQ 254 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333333444444444444333
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.00 E-value=6.4 Score=49.59 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 643 ~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
.+.+.++..++...+..+..++.+++.++.++..++.++..+
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444333
No 106
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.99 E-value=8.3 Score=43.75 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001433 520 ARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDME 555 (1079)
Q Consensus 520 a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le 555 (1079)
..+...+......+...+.+++.+++.+...+..++
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666665554444443
No 107
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.96 E-value=6.8 Score=43.27 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHh
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES-----------KIVQLKTAMHRLEEKVSD 676 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~-----------~~~~l~~e~~~l~~~i~~ 676 (1079)
+.-+.++.+|+..++-+++++..+..|.+++...+.++..+.......+.+ -+++-+.-+..|+.++.+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777666666666666555554443322211 224445556666666666
Q ss_pred HHHHHHHHHH
Q 001433 677 METENQILRQ 686 (1079)
Q Consensus 677 Le~e~~~lrq 686 (1079)
|--|+..+=|
T Consensus 213 Lm~EirnLLQ 222 (401)
T PF06785_consen 213 LMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 108
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.92 E-value=14 Score=45.85 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=8.0
Q ss_pred cccHHHHHHHHHHH
Q 001433 945 SSHWQSIIDSLNTL 958 (1079)
Q Consensus 945 ~~~~~~il~~L~~~ 958 (1079)
.++...|++.|..+
T Consensus 572 npTAqqImqLL~ei 585 (617)
T PF15070_consen 572 NPTAQQIMQLLQEI 585 (617)
T ss_pred CchHHHHHHHhHhc
Confidence 44566666665544
No 109
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.87 E-value=6.3 Score=41.73 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.+-..+.+|+++-.+|..|+..-.+|
T Consensus 161 ~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567888889999999999877654
No 110
>PRK09039 hypothetical protein; Validated
Probab=94.87 E-value=3.8 Score=47.08 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 001433 532 KLEKQVEELTWRLQ 545 (1079)
Q Consensus 532 ~LE~k~~el~~rl~ 545 (1079)
.++.++.+++.++.
T Consensus 78 ~l~~~l~~l~~~l~ 91 (343)
T PRK09039 78 DLQDSVANLRASLS 91 (343)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444444
No 111
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.84 E-value=1.7 Score=42.63 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 658 ~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
..-..+++++.+++.++.+|...|..|=+|.
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777888888888888887776653
No 112
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.83 E-value=18 Score=46.84 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~--~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
.+...+...++.++..++..+.+....+.+++.+.....+...+.++ .-.+++.+++.++++++.+..|.+.+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666555555555444444433333333333333 33456667777777777777777666
No 113
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.82 E-value=0.95 Score=52.42 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.....++.+|..++.++++++....-+.+++...+......-.+++.+..++++...+......+-++|++.|+.
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334445556666666666655554444444444443333333444555556666666666666777777777775
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.81 E-value=6.8 Score=44.10 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 563 AKLQSALQEMQLQFKES 579 (1079)
Q Consensus 563 ~~L~~~~~~le~~l~~~ 579 (1079)
..+.++-.++...+..+
T Consensus 140 ar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 140 ARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 115
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.81 E-value=4.6 Score=39.84 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001433 564 KLQSALQEMQLQFKES 579 (1079)
Q Consensus 564 ~L~~~~~~le~~l~~~ 579 (1079)
.++..+..|+.+++..
T Consensus 21 sle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 21 SLEDHVESLERELEMS 36 (140)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 116
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.80 E-value=4.3 Score=51.27 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 558 KTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1079)
Q Consensus 558 ~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1079)
+.++...|+.+++.|...++.....+.+....+..+.
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666665555555554443333333333
No 117
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.79 E-value=2.9 Score=57.09 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 526 LQAAKNKLEKQVEELTW 542 (1079)
Q Consensus 526 L~~~~~~LE~k~~el~~ 542 (1079)
+......++.++.+|+.
T Consensus 848 l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 848 NRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 118
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.74 E-value=6.5 Score=41.26 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 658 ~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+........+++.++..+.+|+..|.++
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777764
No 119
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=8.2 Score=42.10 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1079)
Q Consensus 519 ~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~ 582 (1079)
...+...++.....|-+++.++..+...-+.... .-..+.+.++.+|.+++..+.+.++-
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~----~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID----QSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555566666666555551111110 22344455555555555555544443
No 120
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.58 E-value=4.7 Score=46.10 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhHH
Q 001433 666 AMHRLEEKVSDME 678 (1079)
Q Consensus 666 e~~~l~~~i~~Le 678 (1079)
++..|+.++..|+
T Consensus 277 Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 277 EVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.57 E-value=4.8 Score=51.71 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=21.7
Q ss_pred CCeEEEEcCcceEEecccchhhc-----chhhhHHHHHHHhh
Q 001433 182 SDFTICHYAGDVTYQTELFLDKN-----KDYVVAEHQALLSA 218 (1079)
Q Consensus 182 ~~F~i~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 218 (1079)
.+..+.-|+-.+.-+.+|-+.-+ .|+++|+++.-+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 45555555555555656655444 47888887655543
No 122
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.36 E-value=9.3 Score=46.29 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001433 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1079)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~~ 689 (1079)
.+-+......++.-++.++..|.++++.-...+..|+.+|..|+++..
T Consensus 578 ~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 578 IECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444455556667777778888888777788888888888888753
No 123
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.33 E-value=1.2 Score=47.56 Aligned_cols=73 Identities=21% Similarity=0.165 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 001433 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1079)
Q Consensus 617 e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~~ 689 (1079)
+...|+.+...+.+..+.+++...++..+..-.+.++.-++..+....+.++.|+.++..++.|++..++.+.
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444455555555666666665555556666667777777777888888888888888887777554
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.32 E-value=0.33 Score=51.10 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
++..+..+.......+..++..+..++.++..++.+..+..+.++.+++++..++-+...+++++.+|+.||..|-+
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555566666666677777777777777777888888777654
No 125
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=19 Score=44.69 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
....+.++...+...++.......+.......+....++..+++++.+..+.....+++.+.....++++|+..|+...
T Consensus 539 ~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 539 NESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666666666666666666777777777777777777777777777777777654
No 126
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.18 E-value=0.048 Score=37.20 Aligned_cols=20 Identities=60% Similarity=0.871 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001433 471 TRASILIQSHCRKYLARLHY 490 (1079)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~ 490 (1079)
..+++.||++||||.+|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35677788888888777776
No 127
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.03 E-value=4 Score=43.83 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
...|+.....-=++-.+||.|+..|+-+
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3444444444445566788888888754
No 128
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.92 E-value=13 Score=47.35 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.|+.+..+-+..+..+..++.-|..
T Consensus 1713 ~dLe~~y~~~~~~L~~~~aeL~~Le~ 1738 (1758)
T KOG0994|consen 1713 KDLELEYLRNEQALEDKAAELAGLEK 1738 (1758)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 44444455555555555555555554
No 129
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.92 E-value=8 Score=46.93 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=13.4
Q ss_pred cCCCCCcchhHHhhchHHHHHHHhhccc
Q 001433 995 RECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1079)
Q Consensus 995 ~~~cs~s~g~qIr~nls~Le~W~~~~~~ 1022 (1079)
+|..-|||- ++-.|+.+-|.
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 356668884 55568888764
No 130
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.81 E-value=9.2 Score=39.36 Aligned_cols=72 Identities=26% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-------ESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~-------~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
.+..+|..+...+...+..+....+.+..+....+.....+..+|.++ +..+..|++++.+|+..+.....+
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 334444445544555555554444444444444444444444444443 344444444444444444444333
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.73 E-value=7.5 Score=38.14 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 648 ERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
.+...+.+++..+..|..+..-|-++|+
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444443
No 132
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.73 E-value=9 Score=47.80 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKID---ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~---ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
...+|+.|+-.|+.++..|+..-- .++-++..++.+..-+..+++++..-..-.+.++++.-+.+..=++....||+
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777665533 34556666777777777777777655555555555544444444455555555
Q ss_pred h
Q 001433 687 Q 687 (1079)
Q Consensus 687 q 687 (1079)
+
T Consensus 178 E 178 (717)
T PF09730_consen 178 E 178 (717)
T ss_pred H
Confidence 3
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.71 E-value=5.2 Score=49.18 Aligned_cols=15 Identities=53% Similarity=0.882 Sum_probs=9.4
Q ss_pred EcCcceEEecccchhhc
Q 001433 188 HYAGDVTYQTELFLDKN 204 (1079)
Q Consensus 188 H~ag~V~Y~~~~fl~kN 204 (1079)
+|.|++-|+ .||=-|
T Consensus 79 Gy~~digyq--~fLYp~ 93 (594)
T PF05667_consen 79 GYRGDIGYQ--TFLYPN 93 (594)
T ss_pred CCCCCCcch--hhccCC
Confidence 477888886 355333
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.64 E-value=6.3 Score=48.71 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001433 530 KNKLEKQVEELTWRL 544 (1079)
Q Consensus 530 ~~~LE~k~~el~~rl 544 (1079)
...|.++++.+..++
T Consensus 89 ~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 89 AEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 135
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.64 E-value=10 Score=46.43 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
..+..+..+..++...+..+...+..+..
T Consensus 390 ~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 136
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.63 E-value=10 Score=39.27 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL 650 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~ 650 (1079)
++...+..+...++.++.+..+.+..+++.+..+..+...+.
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444444444444444444433333
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.61 E-value=15 Score=41.29 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 558 KTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1079)
Q Consensus 558 ~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~ 637 (1079)
-+..+..|..++++|...+.+++.+..--++...+........... ......+.|-.+..+++.++..++..+..+-+
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666555332223222221111000000 01123333333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 638 KFEETSKISEERLKQALEAES--------------KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~--------------~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
+.+++..+.+....+..-+.. .++.|-.|..=|++++..+++|..-+++.
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333222211 13567777788888888888888888774
No 138
>PTZ00014 myosin-A; Provisional
Probab=93.47 E-value=0.21 Score=63.51 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Q 001433 472 RASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRE 512 (1079)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~ 512 (1079)
..+..||++||+|++|+.|++.+.+++.||+.||+++++++
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999998864
No 139
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.26 E-value=13 Score=39.36 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~-~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+..+++++..|+-+.+.|+.+...++.+..++..........+.+ ..-+..-|++.+..|.+.++..+.++...-.
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544433333322211 2233345777777777777777777755443
No 140
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.22 E-value=26 Score=42.88 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
++.+..+|.+.+..|+++-..|..
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544
No 141
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.17 E-value=18 Score=40.90 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 634 ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+..++.+...+.....+++.+.+.++..+...++...++..++++++..++.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555555555555555555554
No 142
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.09 E-value=0.85 Score=51.68 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=74.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhhc-cCCCCCcchhHHhhchHHHHHHHhhc
Q 001433 942 DSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLR-RECCTFSNGEYVKAGLAELELWCCQA 1020 (1079)
Q Consensus 942 ~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r-~~~cs~s~g~qIr~nls~Le~W~~~~ 1020 (1079)
+.++..+.+++.+|..+++.. ...+|+.+..-++...|.+|+..+.+-|+.. -+..+-.--.++...+..+|.++.+-
T Consensus 175 ~~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~ 253 (311)
T PF04091_consen 175 GEPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSL 253 (311)
T ss_dssp -S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 345678999999999998554 5679999999999999999999999998764 34455555678999999999999987
Q ss_pred cc--ccccChHhhhhhHHHHHhHHhhcccCcCCHH-HHHhCcCCCCCHHHHHHHHh
Q 001433 1021 KE--EYAGSSWDELKHIRQAVGFLVIHQKYRISYD-EITNDLCPVSQFFLFVTVCV 1073 (1079)
Q Consensus 1021 ~~--~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~~-~i~~~~c~~Ls~~Qi~~il~ 1073 (1079)
.. ...+.....|..++|.++||....-..- .+ +++..-.+.++|..+..||.
T Consensus 254 ~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y-~d~~~r~~kY~~v~p~~~~~lLe 308 (311)
T PF04091_consen 254 PVPGNNIPSLRETFAELRQLVDLLLSDDWEEY-LDPGIRERKYSRVKPEKAIKLLE 308 (311)
T ss_dssp SSSS--SSTTGGGGHHHHHHHHHHH-------------------------------
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCHHHH-hCccccccccCCCCHHHHHHHHH
Confidence 10 1256677899999999999996422221 12 55445578888888877764
No 143
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.01 E-value=16 Score=43.16 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
...++..++.++..++.++..++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554
No 144
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.97 E-value=15 Score=39.22 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 632 l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+++.....++.+-..++...++..+.++--|+.++++.+.+|..|+..++.+.+
T Consensus 252 seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 252 SEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667777777788888888999999999999999988887776
No 145
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.97 E-value=16 Score=46.07 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 639 FEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 639 ~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+...+...+..+++++..+-..+-.+-+.|+..+..+++++..-++.
T Consensus 448 ~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 448 MEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455556666666777777777888888888888776664
No 146
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.90 E-value=3.6 Score=43.06 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 001433 659 KIVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le 678 (1079)
.+..++.....+.+.+.+++
T Consensus 166 ~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 166 QLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 147
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.81 E-value=31 Score=42.55 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK 637 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~ 637 (1079)
++..+.|..+.+++++++++++..+..++.
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~ 407 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQ 407 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344455555555666666666655554443
No 148
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.72 E-value=10 Score=43.36 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrqq~~~ 690 (1079)
..++.++++|+.....|++.|+.|.-+.+.
T Consensus 406 ~eleqevkrLrq~nr~l~eqneelngtilT 435 (502)
T KOG0982|consen 406 IELEQEVKRLRQPNRILSEQNEELNGTILT 435 (502)
T ss_pred HHHHHHHHHhccccchhhhhhhhhhhhhhh
Confidence 456666777766666677777666665443
No 149
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.67 E-value=1.5 Score=46.39 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
...+.+++.++++++.+++++..+.. ....++..........+.+++.+..+|.+++..++.++..++.+++.++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655555554322 22333333334444445555566666666666666666666666666654
No 150
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=92.64 E-value=2.9 Score=50.83 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=87.0
Q ss_pred CccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhhccCCCCCcchhHHhhchHHHHHHHhhccc
Q 001433 943 SASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKE 1022 (1079)
Q Consensus 943 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~r~~~cs~s~g~qIr~nls~Le~W~~~~~~ 1022 (1079)
+.+++....+..|...+..|+.. +++.....+...+..-|+-.+|+.++++. -+|..-|.|+.+=+ +.++.--+
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~---~~L~~~~~- 425 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDM---RALFSVFS- 425 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHH---HHHHTTS--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHH---HHHHHHHH-
Confidence 35578889999999999999999 99999999999999999999999999976 45666677777665 44444433
Q ss_pred ccccChHhhhhhHHHHHhHHhhcccCcCCH--------------HHHHhCc-CCCCCHHHHHHHHh
Q 001433 1023 EYAGSSWDELKHIRQAVGFLVIHQKYRISY--------------DEITNDL-CPVSQFFLFVTVCV 1073 (1079)
Q Consensus 1023 ~~~~~a~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-c~~Ls~~Qi~~il~ 1073 (1079)
.+....-.++..|.+++.||-++..+...+ ..++.+. =..||+.++.+||.
T Consensus 426 ~~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 426 QYTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 344445579999999999999876554322 1111111 26799999999986
No 151
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.62 E-value=25 Score=42.56 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+...+.++..|-..+++++....+++.
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544444443
No 152
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.49 E-value=20 Score=49.07 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 657 ESKIVQLKTAMHRLEEK 673 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~ 673 (1079)
+..+...+....+....
T Consensus 367 ~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 367 RRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 153
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.06 E-value=14 Score=46.82 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e 641 (1079)
++.+|++.++..+..+...++++..+.+.
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444443
No 154
>PRK01156 chromosome segregation protein; Provisional
Probab=92.04 E-value=52 Score=43.33 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhh--------------------ccCCCCCcchhHHh
Q 001433 948 WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLL--------------------RRECCTFSNGEYVK 1007 (1079)
Q Consensus 948 ~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~lfN~Ll~--------------------r~~~cs~s~g~qIr 1007 (1079)
....+..|+.+...+...+++..+.... .+.|.-.....|..+=. ..+....|.|.+.+
T Consensus 731 ~~~~~~~l~~~r~~l~k~~~~~~I~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~ 809 (895)
T PRK01156 731 IKKAIGDLKRLREAFDKSGVPAMIRKSA-SQAMTSLTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTA 809 (895)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHH
Confidence 3455667777888888877776443322 23222111112211111 13477889999999
Q ss_pred hchH
Q 001433 1008 AGLA 1011 (1079)
Q Consensus 1008 ~nls 1011 (1079)
.+|.
T Consensus 810 ~~la 813 (895)
T PRK01156 810 VAFA 813 (895)
T ss_pred HHHH
Confidence 8875
No 155
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.91 E-value=35 Score=43.57 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHH-HHHhCCCCHHHHHH
Q 001433 946 SHWQSIIDSLNTLLS-TLKQNFVPPVLVQK 974 (1079)
Q Consensus 946 ~~~~~il~~L~~~~~-~l~~~~v~~~l~~Q 974 (1079)
.+++.+-+-+..=.+ .++..+|++.++.|
T Consensus 835 ~t~~eld~~I~~e~t~~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 835 TTMDELDQAITDELTRALKFENVNEDAVQQ 864 (1072)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 344444444444344 55666666665544
No 156
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.87 E-value=40 Score=41.69 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----------------chHHHHHHHHHHHHHHHHH
Q 001433 561 ENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPV----------------IDHAVVEELTSENEKLKTL 624 (1079)
Q Consensus 561 e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~----------------~~~~~~~~L~~e~~~Le~~ 624 (1079)
+......++..+..++.+...++....+..+++..++..+..... +..+.+...-.+...|+.+
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQke 520 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKE 520 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666665555655565555433221111 1344444455555555555
Q ss_pred HHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 625 VSSLEKKIDETEKKF-----EE-----TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 625 l~~l~~~l~ele~~~-----~e-----~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+..+..++...-.-. .+ .-+..=++...+.+....+...-.+.....-+|.+|++.++.+.+
T Consensus 521 iN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~~ 592 (594)
T PF05667_consen 521 INSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTESQ 592 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 555555554211111 11 111111222334444444444444555556666677777666554
No 157
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.84 E-value=14 Score=43.24 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
++...+++....+++..|...+.+++++...+.-+++++..-|....+.-++++.+.++++++-.+.....++-+.
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666665555555555555555555555666666666666655555554444
No 158
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.71 E-value=1.6 Score=45.19 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~ 646 (1079)
++++.+++..|-.++++++.++++..+++..++.++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333333
No 159
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.54 E-value=17 Score=41.01 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS------------KISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~------------~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~ 676 (1079)
+.+..|..+...|++.+.+++.++.-+.+++++.+ .+.+.+..+++.+..++.+|+.++..+-++.++
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444333321 355677788888999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 001433 677 METENQILRQQSLL 690 (1079)
Q Consensus 677 Le~e~~~lrqq~~~ 690 (1079)
+..|-+..+.++..
T Consensus 159 l~~ERD~yk~K~~R 172 (319)
T PF09789_consen 159 LVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887643
No 160
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.52 E-value=19 Score=45.64 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
-+.++.+.+.....++.++...+...+++...|+=++.-+.+|+
T Consensus 121 ~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 121 LIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444
No 161
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.52 E-value=30 Score=39.52 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001433 615 TSENEKLKTLVSSLEKKIDETEK 637 (1079)
Q Consensus 615 ~~e~~~Le~~l~~l~~~l~ele~ 637 (1079)
..-+++|+.+++.++..+...++
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555444443
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.34 E-value=2.6 Score=44.39 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 671 (1079)
...+..+..++..|+..+.++...+.+..+.+..+..+...+.-++..+++++..++.+..+|=
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555444444445555555555544443
No 163
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.27 E-value=3.2 Score=47.05 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.....++++...++.++.-...+++.|++
T Consensus 105 ~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 105 QLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555566666666665
No 164
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.24 E-value=12 Score=41.53 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~ 657 (1079)
..++|+.-..+++++...++-++.++..+..|.+++..++..++.++.
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 445555555556665555555555655555555555555555555443
No 165
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.18 E-value=30 Score=42.88 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1079)
...|..+++.++++...+++.++-+++..++++.
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~ 525 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQ 525 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 3444455555555555555555555554444444
No 166
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.04 E-value=32 Score=38.99 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.....+++.+-..+..|+.|+..++..
T Consensus 240 ~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 240 ETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777666653
No 167
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.01 E-value=25 Score=41.57 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK-QALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~-~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
...+...++.++..++..+.+++..+.+++........ ...+....+..++.++..++.++..++..++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444433333322221 1233444556666666666666666665554
No 168
>PF13514 AAA_27: AAA domain
Probab=90.90 E-value=74 Score=42.95 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 560 QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1079)
Q Consensus 560 ~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1079)
.....+..+++.++.++..+...+.....+...+.
T Consensus 801 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 801 EERERLQEQLEELEEELEQAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666555544444444433
No 169
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.87 E-value=57 Score=41.56 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 527 QAAKNKLEKQVEELTWRLQLEK 548 (1079)
Q Consensus 527 ~~~~~~LE~k~~el~~rl~~E~ 548 (1079)
.+.+..|+=++.+++.+++-.+
T Consensus 299 ~k~kt~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 299 SKKKTKLELKIKDLQDQITGNE 320 (1200)
T ss_pred HHHhhhhhhhhHHHHHHhhhhh
Confidence 3445566667777776666433
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.82 E-value=22 Score=45.69 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001433 567 SALQEMQLQFKESKEK 582 (1079)
Q Consensus 567 ~~~~~le~~l~~~~~~ 582 (1079)
.++.+++.++..++.+
T Consensus 237 ~~L~~l~~ql~~a~~~ 252 (754)
T TIGR01005 237 QQLAELNTELSRARAN 252 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 171
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.75 E-value=26 Score=37.54 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---------HHHHHHHHHHHHHHHhHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKI---------VQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~--~~~~~---------~~l~~e~~~l~~~i~~Le 678 (1079)
.+..+......+...++.|+..+.+++.++.+++.....+..+... ++.++ ......+.++++++..++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~e 178 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555554444444433221 12221 233444555555555555
Q ss_pred HHHHHHH
Q 001433 679 TENQILR 685 (1079)
Q Consensus 679 ~e~~~lr 685 (1079)
.+.....
T Consensus 179 a~a~a~~ 185 (221)
T PF04012_consen 179 ARAEASA 185 (221)
T ss_pred HHHHHHH
Confidence 5544333
No 172
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.51 E-value=31 Score=38.02 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 649 l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
++......+.++.+.-..-+.+++++..++.||--|+||-
T Consensus 198 ~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 198 IEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444567778888888899999999999999999974
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.47 E-value=88 Score=43.08 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=11.3
Q ss_pred CcHHHHHHHHHhhcCC
Q 001433 331 SDEVTACKRLLEKVGL 346 (1079)
Q Consensus 331 ~~~~~~~~~il~~~~~ 346 (1079)
.+.+...+.-|..+|+
T Consensus 616 ~~~ra~IEaAL~~~GL 631 (1353)
T TIGR02680 616 ADVRAGLEAALEAAGL 631 (1353)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3557778888877775
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.35 E-value=34 Score=43.33 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=9.8
Q ss_pred EEEEcCcceEEecccchhhc
Q 001433 185 TICHYAGDVTYQTELFLDKN 204 (1079)
Q Consensus 185 ~i~H~ag~V~Y~~~~fl~kN 204 (1079)
.|-|=.|+|.|-..+..++|
T Consensus 244 ~vL~~ng~v~~~~~~l~~~~ 263 (717)
T PF10168_consen 244 FVLRENGDVYLLYTSLQDEN 263 (717)
T ss_pred EEEecCCCEEEEEEecccCc
Confidence 34455666655444443333
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.35 E-value=9.5 Score=44.02 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHH
Q 001433 666 AMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 666 e~~~l~~~i~~Le~e~~ 682 (1079)
.+...+++|.+|++++.
T Consensus 429 ~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 176
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.28 E-value=2.8 Score=44.34 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
.+.....+++.++++++.++.++... ......++..++.+....+.+|+++..+|++++..++.+++.++.+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777666665544 33455566666677777777788888888888888888887777654
No 177
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.28 E-value=27 Score=44.44 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=5.2
Q ss_pred hhcHHHHHHHc
Q 001433 750 HENVDALINCV 760 (1079)
Q Consensus 750 ~e~~~~l~~~i 760 (1079)
.+|.+.+.+.|
T Consensus 486 ~eD~~lf~~~i 496 (1072)
T KOG0979|consen 486 SEDYLLFVKKI 496 (1072)
T ss_pred hHHHHHHHHHh
Confidence 44555554443
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.22 E-value=3.7 Score=46.61 Aligned_cols=75 Identities=25% Similarity=0.288 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
...+..+...++.+-.++.+++.+++++..++.++..+++.+.++++..-.++-.+...++-++.+.+++.+.+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555544444444433333333344444444444444443333
No 179
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.19 E-value=38 Score=38.44 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
.++..+++....+........++......+...........+.+.+-+.++..++.+...|+.++.+||.=
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665555555555555555555554444444445555555555555555555555555543
No 180
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.15 E-value=30 Score=42.15 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+..++.+++.++.++..++.+...+++
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 181
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.77 E-value=37 Score=37.69 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 612 EELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
.++.++...+.....++...+.
T Consensus 161 ~el~aei~~lk~~~~e~~eki~ 182 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQ 182 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 182
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.67 E-value=1e+02 Score=42.60 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 656 ~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+...+...++.+..|+.++.+|+.++.....
T Consensus 856 ~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 856 LLTSLDSVSTNIAKLEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333444444455555555555555544444
No 183
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.63 E-value=62 Score=40.11 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 649 RLKQALEAESKIVQLKTAMHRLEE 672 (1079)
Q Consensus 649 l~~~l~~~~~~~~~l~~e~~~l~~ 672 (1079)
+...+..++.....+..++..+..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.58 E-value=33 Score=42.98 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.+......+...|+.++..++.++...+....+ +...+...+..+..++..+++....-++++..|+.++..+.
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~ 432 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALS 432 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444332221 12222333333444444444444333444444444444333
No 185
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=3.9 Score=48.85 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE---ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~---~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+++.|+.+++.|+..+++++..++.++.+++++..+.. ....++...+..+..|+.++.+-...++.|+.++..+++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544443332 122334556777778888888888888888888887775
No 186
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.36 E-value=49 Score=38.53 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=13.8
Q ss_pred HHHHHHHhHHHHHHHHhHhHHHHH
Q 001433 487 RLHYMKLKKAAITTQCAWRGKVAR 510 (1079)
Q Consensus 487 r~~~~~~~~a~v~iQ~~~R~~~aR 510 (1079)
+++|+.+.......|++.-++..+
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K 324 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQK 324 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555666666666666655443
No 187
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=68 Score=40.00 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
..+.+++.+...+......+.+++.-+...++...+...+....+++++....+.++.+++++..+.+++.+++.+.++.
T Consensus 524 ~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~ 603 (698)
T KOG0978|consen 524 LKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR 603 (698)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555666666666666667777777777778888888888888888887777764
Q ss_pred c
Q 001433 689 L 689 (1079)
Q Consensus 689 ~ 689 (1079)
.
T Consensus 604 ~ 604 (698)
T KOG0978|consen 604 K 604 (698)
T ss_pred H
Confidence 3
No 188
>PLN02939 transferase, transferring glycosyl groups
Probab=89.13 E-value=41 Score=43.58 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=17.3
Q ss_pred hHHHHHHH-HHHHHhhhccCCCcccchhhhhHH
Q 001433 792 TSVFDRLI-QMIGSAIENEDDNDHMAYWLSNTS 823 (1079)
Q Consensus 792 ~~ll~~i~-~~I~~~i~~~~d~~~l~fWLSN~~ 823 (1079)
-.+|.+.+ ..+... ....|+-.+==|-+...
T Consensus 593 F~~FsrAaLe~~~~~-~~~PDIIH~HDW~TaLV 624 (977)
T PLN02939 593 FSYFSRAALELLYQS-GKKPDIIHCHDWQTAFV 624 (977)
T ss_pred HHHHHHHHHHHHHhc-CCCCCEEEECCccHHHH
Confidence 34555543 433332 23467777777888775
No 189
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=57 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=7.2
Q ss_pred HHHHHHHHHhCCCCHH
Q 001433 955 LNTLLSTLKQNFVPPV 970 (1079)
Q Consensus 955 L~~~~~~l~~~~v~~~ 970 (1079)
+..+.++|+.+..-..
T Consensus 621 i~tlrtvlkankqtae 636 (772)
T KOG0999|consen 621 ITTLRTVLKANKQTAE 636 (772)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3344445555444333
No 190
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.75 E-value=6.6 Score=32.84 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001433 636 EKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 636 e~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le 678 (1079)
..++.++.........+|.+++.....|..+++.|+.++++++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444445555555555555555555555555555443
No 191
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.75 E-value=32 Score=35.58 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 570 QEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1079)
Q Consensus 570 ~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l 649 (1079)
.-.+.+++..+++.+........+.++...+ ...+..|.....++.+..+..+..+..+..++.+.+..-.-.
T Consensus 91 ~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~-------~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a 163 (205)
T KOG1003|consen 91 VIIEGELERAEERAEAAESQSEELEEDLRIL-------DSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFA 163 (205)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344455555544444444444555444322 122334444455555555555555555555555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001433 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 650 ~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
...+..+++.+..|+..+....++-..+..+++.
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666665555555543
No 192
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=8 Score=46.37 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=9.7
Q ss_pred HHHHhhcCCCchhHhhH
Q 001433 131 ILDLIEKKPGGIIALLD 147 (1079)
Q Consensus 131 ~idli~~~~~Gil~lLd 147 (1079)
+.+|..++. +|+.+|-
T Consensus 59 vyEL~~~~~-~li~il~ 74 (652)
T COG2433 59 VYELGADKR-DLIRILK 74 (652)
T ss_pred HHHHhcChh-HHHHHHH
Confidence 566665544 6666665
No 193
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.67 E-value=82 Score=40.21 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhc
Q 001433 246 SRFKQQLQQLLETLS 260 (1079)
Q Consensus 246 ~~f~~~l~~Lm~~l~ 260 (1079)
..+..++..|.+.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 446678888888884
No 194
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.58 E-value=21 Score=41.18 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001433 569 LQEMQLQFKESKEKL 583 (1079)
Q Consensus 569 ~~~le~~l~~~~~~l 583 (1079)
..+.+..|.++..++
T Consensus 236 ~~~~~~~L~kl~~~i 250 (359)
T PF10498_consen 236 LPETKSQLDKLQQDI 250 (359)
T ss_pred hhHHHHHHHHHHHHH
Confidence 333344444433333
No 195
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.49 E-value=74 Score=39.47 Aligned_cols=6 Identities=0% Similarity=-0.153 Sum_probs=2.5
Q ss_pred Hhhhhh
Q 001433 740 KLRRSH 745 (1079)
Q Consensus 740 ~~~~~l 745 (1079)
.+..++
T Consensus 445 ~y~~~~ 450 (569)
T PRK04778 445 DYLEMF 450 (569)
T ss_pred HHHHHH
Confidence 344444
No 196
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.42 E-value=5.2 Score=34.47 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~ 673 (1079)
.|+.++..|+..++.+..++.-.+.....+..+.+....++.++-..+.+|..+++.++.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555555555555555555555544444444444444333
No 197
>PRK11281 hypothetical protein; Provisional
Probab=88.38 E-value=14 Score=48.90 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
......|+.|...++.+++-.+..+.
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666555555554444443
No 198
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.15 E-value=13 Score=44.47 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=16.1
Q ss_pred cchhHHhhchHHHHHHHhhccc
Q 001433 1001 SNGEYVKAGLAELELWCCQAKE 1022 (1079)
Q Consensus 1001 s~g~qIr~nls~Le~W~~~~~~ 1022 (1079)
+.-+-++.-=+++.+|+++.++
T Consensus 707 sed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 707 SEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred ChhHHHHhhhHHHHHHHHhccH
Confidence 3445666777899999998763
No 199
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.12 E-value=49 Score=36.98 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 001433 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 622 e~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~-~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
...+..++.+.......+..+.+++.+++..|+..+.-+ ..|.+.+..|..+-..|+..++
T Consensus 141 ~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 141 QKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333433333334444455556666666665554433 5666666666666666666654
No 200
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.98 E-value=0.15 Score=65.57 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV 661 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~ 661 (1079)
.++..+.+|...+.++.+.+++.......+++.+..+...++++...+.
T Consensus 318 elEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 318 ELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555544443333
No 201
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.96 E-value=48 Score=37.10 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001433 663 LKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
+..++...+..+..++..+..-|
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=60 Score=40.51 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 660 IVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
+.++..++.+...++.+++.++..++++
T Consensus 794 v~El~~~l~e~~~~l~~~q~e~~~~keq 821 (970)
T KOG0946|consen 794 VIELLKNLSEESTRLQELQSELTQLKEQ 821 (970)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 3334344555555556666666666554
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.94 E-value=7.9 Score=33.35 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 620 ~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+|+..+..|+..+..+..++...+..+..+...-..+...+...-.++.+|+++++.|+.|++..+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888888888888887777776666666665666666666666777777777777777666553
No 204
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.93 E-value=74 Score=38.85 Aligned_cols=15 Identities=0% Similarity=0.271 Sum_probs=7.3
Q ss_pred hhHhhhhhHHhhhhc
Q 001433 738 DSKLRRSHIEHQHEN 752 (1079)
Q Consensus 738 ~~~~~~~l~e~~~e~ 752 (1079)
..++.|....+..++
T Consensus 811 nee~ag~~~~f~~dd 825 (961)
T KOG4673|consen 811 NEEIAGQNSAFENDD 825 (961)
T ss_pred hHhHhcccchhhccc
Confidence 445555554444333
No 205
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.84 E-value=21 Score=47.16 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
......++.|...++.+++.++.++.
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666666665555544
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.76 E-value=6.3 Score=40.99 Aligned_cols=60 Identities=28% Similarity=0.311 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.+++++++++.++..++.+++.+++.++++.+..++.++.+...|++....|..+...|+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 333333333333333333333334444444444444444444444444333333333333
No 207
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.63 E-value=1.3e+02 Score=41.49 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001433 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEK 596 (1079)
Q Consensus 526 L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee 596 (1079)
|......|..+...++..+..-+.....++.........+..++.+|+..+..+...++++.+.++.+...
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555566666655555444444455555556666777888888888888877777766666655543
No 208
>PRK10698 phage shock protein PspA; Provisional
Probab=87.56 E-value=45 Score=35.90 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHh
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK--IV---------QLKTAMHRLEEKVSD 676 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~--~~---------~l~~e~~~l~~~i~~ 676 (1079)
...+..|+.+....+..++.|+..+..++.++.+++.....+..+...++.. +. ..-...++++++|.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777777777766666666655443222 21 122344445555655
Q ss_pred HHHHHHH
Q 001433 677 METENQI 683 (1079)
Q Consensus 677 Le~e~~~ 683 (1079)
+|.+-+.
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 5555544
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.45 E-value=24 Score=38.01 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 643 ~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..++..++.-+.+++....+.++.+..+.+++..|.++.+.++.+
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444555555566666666666666666665
No 210
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.34 E-value=0.18 Score=65.02 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.+..+..++..|..++.++...+.+..+.+.++++.+..+...+.+++..+..++..+...+....+++.++..+++
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666655555555555555555555555454444444555555555555555555544444
No 211
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.34 E-value=83 Score=38.78 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 001433 470 QTRASILIQSHCRKYLARLHYMK 492 (1079)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1079)
..+++++.++.+..-..|.++..
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~~~ 107 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHKLL 107 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665533
No 212
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.31 E-value=28 Score=38.99 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001433 949 QSIIDSLNTLL 959 (1079)
Q Consensus 949 ~~il~~L~~~~ 959 (1079)
+.+-+++..++
T Consensus 286 ~~l~nl~~~l~ 296 (302)
T PF10186_consen 286 DTLGNLLNLLW 296 (302)
T ss_pred hhHHHHHHHHh
Confidence 33333333333
No 213
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=16 Score=34.83 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFE---------------ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~---------------e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
++.+...+..++.++.+.+..+.+++.--. ...+...++..+++.++..+..|+++.+.+++++.
T Consensus 22 l~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 22 LQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555443110 12233344555556666666666666666666666
Q ss_pred hHHHHHHHHH
Q 001433 676 DMETENQILR 685 (1079)
Q Consensus 676 ~Le~e~~~lr 685 (1079)
+|++++...-
T Consensus 102 eLq~~i~~~l 111 (119)
T COG1382 102 ELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHh
Confidence 6666665443
No 214
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.82 E-value=4.7 Score=42.51 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 650 ~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
..+++.++++...++++.+++..+..+|-+|...|+.+.
T Consensus 171 ~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 171 QKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333444455555555555666666666666666666654
No 215
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.73 E-value=76 Score=38.67 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
......|+.+++.++.++...=.++...|++
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554
No 216
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.69 E-value=6.5 Score=33.09 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
++..+.....-+.-+++++..+...|..+..+++...+.|+.|++.++++
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444445555555556666666666666666666666653
No 217
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.42 E-value=64 Score=36.53 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
+..+..++.++..++.++.....+..
T Consensus 261 ~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333
No 218
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.30 E-value=49 Score=35.08 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 647 ~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
......+..++..+++.+-.+..|+..+.....||+.|-
T Consensus 157 ~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 157 SKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555666666666666666666665553
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.22 E-value=49 Score=35.01 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~-~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
+..+......+++++.+++-..+.++.+...++.+..++..+.+..-..+ .+..-..--|+.++..|.+.++.-.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666665555544433222 1222333334455555555544333
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.21 E-value=49 Score=38.49 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhHH
Q 001433 662 QLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~~Le 678 (1079)
..+.++.+|++++.+|=
T Consensus 432 s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 34444445555554443
No 221
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.96 E-value=66 Score=37.13 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 637 ~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.++++++....+....+...+.++..++..+..|+.+..+...+...+++
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~ 270 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEE 270 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444433
No 222
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.77 E-value=47 Score=34.33 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 616 ~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.+..+|+......-..+....+++..+..+...+...+.+.+..+..+..++...+.+...+...+..++++
T Consensus 63 ~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 63 KELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444444445555555555555555555566666666666666666666666654
No 223
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.61 E-value=31 Score=32.15 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~ 640 (1079)
.|..+.....+.+.+++.++.++...+.
T Consensus 48 ~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 48 SLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 224
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.38 E-value=1.1e+02 Score=38.33 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
...+.++..++.+++.....+..+-+++..++.|
T Consensus 851 ~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 851 KLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 3344555556656666656666666665555544
No 225
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.35 E-value=82 Score=36.80 Aligned_cols=17 Identities=12% Similarity=0.388 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHHHHHH
Q 001433 947 HWQSIIDSLNTLLSTLK 963 (1079)
Q Consensus 947 ~~~~il~~L~~~~~~l~ 963 (1079)
+..++-..|+.++.-|+
T Consensus 602 sledl~~~l~k~~~~l~ 618 (622)
T COG5185 602 SLEDLENELGKVIEELR 618 (622)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 226
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.27 E-value=15 Score=36.81 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=5.5
Q ss_pred HHHhHHHHHHHHH
Q 001433 673 KVSDMETENQILR 685 (1079)
Q Consensus 673 ~i~~Le~e~~~lr 685 (1079)
++.+.+.|++.|+
T Consensus 134 e~rkke~E~~kLk 146 (151)
T PF11559_consen 134 ELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 227
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.98 E-value=64 Score=35.28 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+.+++..-++.|.++++++..|+.+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~e 215 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAE 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666664
No 228
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.97 E-value=78 Score=39.20 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 658 ~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+..+++++..+++++.++-.++...|++
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555553
No 229
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.82 E-value=39 Score=32.58 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 001433 565 LQSALQEMQLQFK 577 (1079)
Q Consensus 565 L~~~~~~le~~l~ 577 (1079)
|...+..++.++.
T Consensus 21 L~s~lr~~E~E~~ 33 (120)
T PF12325_consen 21 LQSQLRRLEGELA 33 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 230
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=84.45 E-value=1.1e+02 Score=37.39 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 660 IVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
+.-.-.+++..+..|..++.|.+.|+.|.
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555566666666666666653
No 231
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.27 E-value=18 Score=36.24 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001433 618 NEKLKTLVSSLEKKIDETE 636 (1079)
Q Consensus 618 ~~~Le~~l~~l~~~l~ele 636 (1079)
+..|+..++.|+.++++++
T Consensus 68 ~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 232
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.24 E-value=16 Score=39.45 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
.+.|..|+..+.++|.....++..+|..+..++.+.. ..+..+..+.+++..|+++|.++..+
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~-------~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESERN-------KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554444443 44444455556666666666666666
No 233
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.12 E-value=95 Score=37.22 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 618 ~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+..-..++++|-.++...+-+..-...+...+..+++.++++...+..+++....++..|++|+..-+.
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666666666666655556666666677777777777777777777777777777777766554
No 234
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.87 E-value=94 Score=36.25 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.++...+...+..|.+.-+|-..|+++
T Consensus 392 kEi~gniRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 392 KEIDGNIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555554
No 235
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.67 E-value=15 Score=35.68 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le 678 (1079)
|...+++|.++++.+-.++++..+-.+..+++..++...+......+..++..+..|+.+|.+++
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555554444455555555555555555555555444
No 236
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=96 Score=36.16 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 518 MAARETGALQAAKNKLEKQVEELTWRLQLEK-----RMRVDMEEAKTQENAKL-QSALQEMQLQFKESKEKLMKEIEVAK 591 (1079)
Q Consensus 518 ~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~-----~~~~~le~~~~~e~~~L-~~~~~~le~~l~~~~~~l~~e~~~~~ 591 (1079)
.-..-+.+|......+..++.++++.-+.-+ +...-.++.+..|.+.- -..+++++..+....++..+..+...
T Consensus 290 dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~ 369 (521)
T KOG1937|consen 290 DGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAE 369 (521)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344445555556666666666665444221 11111111111222222 25567777777666665554334444
Q ss_pred HHHhhc
Q 001433 592 KEAEKV 597 (1079)
Q Consensus 592 ~~~ee~ 597 (1079)
++..++
T Consensus 370 ~Lrsel 375 (521)
T KOG1937|consen 370 KLRSEL 375 (521)
T ss_pred HHHHHH
Confidence 444333
No 237
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.53 E-value=25 Score=39.56 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le 678 (1079)
.|..++..|--+++-|+..++++++.+.++.++..+....++-.......++.++..|++++....
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777777777777777776665555555555566666666666666664433
No 238
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.42 E-value=1.1e+02 Score=39.94 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCC-Ceeeee-------------cCCCCC--CCCCcccchh
Q 001433 247 RFKQQLQQLLETLSSSE-PHYIRC-------------VKPNNL--LKPAIFENKN 285 (1079)
Q Consensus 247 ~f~~~l~~Lm~~l~~t~-~hfirC-------------ikpN~~--~~~~~fd~~~ 285 (1079)
..-..|..|+++|...+ -++|+| +-|++. +..+.||...
T Consensus 163 IIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~ 217 (1041)
T KOG0243|consen 163 IIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDST 217 (1041)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCc
Confidence 34456777777777766 445666 455555 5556666653
No 239
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=83 Score=37.49 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 560 QENAKLQSALQEMQLQFKESKE 581 (1079)
Q Consensus 560 ~e~~~L~~~~~~le~~l~~~~~ 581 (1079)
.+++..+++..+|...+..++.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 240
>PF13514 AAA_27: AAA domain
Probab=83.03 E-value=1.2e+02 Score=41.14 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK--ISEERLK---QALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 607 ~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~--~~~~l~~---~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
.......+..+...++..+..+..++..++.++..+.- ..-.... .|.+....+.+...++..++.++..++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~ 319 (1111)
T PF13514_consen 240 GAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAEL 319 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777776666665554321 1111222 222233334445555555555555555555
Q ss_pred HHHHH
Q 001433 682 QILRQ 686 (1079)
Q Consensus 682 ~~lrq 686 (1079)
..+..
T Consensus 320 ~~~~~ 324 (1111)
T PF13514_consen 320 RALLA 324 (1111)
T ss_pred HHHHH
Confidence 55444
No 241
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=83.03 E-value=22 Score=32.98 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
|-.+..+|+.+..-|++.+-+.+.+..++...+......+..++.+++.|.=....|..+++.|..|++..
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666677776666666666666655555555555555555555555555556666666666543
No 242
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=83.03 E-value=1.1e+02 Score=36.55 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=6.2
Q ss_pred HHHHHhHHHHHHHHHH
Q 001433 671 EEKVSDMETENQILRQ 686 (1079)
Q Consensus 671 ~~~i~~Le~e~~~lrq 686 (1079)
.++|..|.+-+..+.+
T Consensus 171 ~~qi~~L~~~n~~i~~ 186 (475)
T PRK10361 171 AHEIRNLQQLNAQMAQ 186 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 243
>PRK11281 hypothetical protein; Provisional
Probab=82.97 E-value=45 Score=44.33 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDET 635 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~el 635 (1079)
|+.....+++.+.+.++.+.+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 244
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.97 E-value=5.5 Score=42.00 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
++.++++++.++..+++++++.+.+++.+++....+.++.++.+.+.+.+-++...|+++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555555555555555555543
No 245
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.60 E-value=84 Score=38.68 Aligned_cols=24 Identities=25% Similarity=0.518 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETE 636 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele 636 (1079)
+++.++++|....++|+..++.++
T Consensus 234 ~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 234 EMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444444444333333
No 246
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.58 E-value=1.5e+02 Score=37.78 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHhHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE--SKI-----VQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~--~~~-----~~l~~e~~~l~~~i~~Le~e 680 (1079)
...+.+|...+...+.++.+|..+++..+++...++.+..-+.++|+--. ..+ ....++--+-=.+|.+||.|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999988888877764321 111 11111111122488999999
Q ss_pred HHHHHH
Q 001433 681 NQILRQ 686 (1079)
Q Consensus 681 ~~~lrq 686 (1079)
=..||-
T Consensus 199 C~rLr~ 204 (769)
T PF05911_consen 199 CQRLRA 204 (769)
T ss_pred HHHHHH
Confidence 988886
No 247
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.51 E-value=1.7e+02 Score=38.12 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
......++..+...+++..++..++.....|
T Consensus 443 ~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 443 KHDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred hhcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3333445555555555555555555554444
No 248
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.43 E-value=81 Score=39.21 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 518 MAARETGALQAAKNKLEKQVEELTWRLQLEKRMRV---DMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1079)
Q Consensus 518 ~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~---~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1079)
.++....+|.......++++.++...+.+....-. .-+....+....+...+++|.++..+-..+..+-.++..++.
T Consensus 58 ~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~ 137 (660)
T KOG4302|consen 58 EASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLC 137 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666777666655552211111 011122233444444555555554444444444444444444
Q ss_pred hhc
Q 001433 595 EKV 597 (1079)
Q Consensus 595 ee~ 597 (1079)
+++
T Consensus 138 ~~l 140 (660)
T KOG4302|consen 138 EEL 140 (660)
T ss_pred HHh
Confidence 444
No 249
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.21 E-value=1.1e+02 Score=35.86 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001433 560 QENAKLQSALQEMQLQFKESKEK 582 (1079)
Q Consensus 560 ~e~~~L~~~~~~le~~l~~~~~~ 582 (1079)
.+..++.++|.+++..+..++.+
T Consensus 87 ~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 87 DDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444555555555555555444
No 250
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=82.04 E-value=50 Score=31.82 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 620 KLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 620 ~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.|+..+....+-+.+-+.+...+.+...+-..........+..+..++..++..+..+++.+..+..
T Consensus 43 ~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 43 ELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334334444444444444444444444333444445555666666666666666666666665554
No 251
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.87 E-value=1.4e+02 Score=36.89 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 520 ARETGALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 520 a~~~~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
......+.....+.+..+.++++..-
T Consensus 150 ~~k~ae~~~lr~k~dss~s~~q~e~~ 175 (716)
T KOG4593|consen 150 EDKLAELGTLRNKLDSSLSELQWEVM 175 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 252
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.70 E-value=23 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
..++.++...+....+|..+|..|+.+++.+
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 253
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=81.68 E-value=58 Score=38.11 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001433 454 TGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHY 490 (1079)
Q Consensus 454 ~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~ 490 (1079)
.++--+..-.++.+...+.||.++|..|.-|+..+-+
T Consensus 347 KhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~ 383 (489)
T KOG3684|consen 347 KHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLV 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444445555556667888888888887766554
No 254
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=81.65 E-value=1.3e+02 Score=36.17 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=9.6
Q ss_pred eeccceeeeeccc
Q 001433 350 QIGKTKVFLRAGQ 362 (1079)
Q Consensus 350 ~iG~tkVFlr~~~ 362 (1079)
-.|.|+.+|+.|-
T Consensus 57 L~GQTe~~Fe~Wr 69 (570)
T COG4477 57 LTGQTETKFEEWR 69 (570)
T ss_pred ccCccHHHHHHHH
Confidence 4688888887764
No 255
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.61 E-value=0.45 Score=60.41 Aligned_cols=8 Identities=25% Similarity=0.733 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 001433 313 DEFVDRFG 320 (1079)
Q Consensus 313 ~~F~~ry~ 320 (1079)
.+|+.+-.
T Consensus 129 e~yI~~I~ 136 (713)
T PF05622_consen 129 EEYIQRIM 136 (713)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 256
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=81.07 E-value=32 Score=32.20 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 649 l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
+..+++..+..+..++++++.++.++.+++.++..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555555444
No 257
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.91 E-value=0.5 Score=60.06 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
++..++.+.+.+..+...|++.++
T Consensus 399 k~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 399 KLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 258
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.89 E-value=1.1e+02 Score=36.94 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001433 564 KLQSALQEMQLQFKESKE 581 (1079)
Q Consensus 564 ~L~~~~~~le~~l~~~~~ 581 (1079)
+|..++.+|+..+..+++
T Consensus 178 DLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTALEK 195 (861)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 344445555555544443
No 259
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.87 E-value=77 Score=38.67 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1079)
Q Consensus 562 ~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e 641 (1079)
.....+.+++.+.+-+...++...+-+...+.. ..+.-.++......++.++.+.+.++...|+++.+
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~------------~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~q 87 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEA------------LLEAKEEVHKLRAELERELKERRNELQRLERRLLQ 87 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.+..+++....++..+..+...++++...+.++.+++.+...+.++
T Consensus 88 Ree~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 260
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.80 E-value=15 Score=38.39 Aligned_cols=76 Identities=30% Similarity=0.465 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETENQILRQ 686 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~----~~i~~Le~e~~~lrq 686 (1079)
+..|.+++..++..+.+++..++.......+. .+...+..++++++.++..++.++..+. +.+..+++++...+.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444332222211 2334445555666666666666665443 256666666666665
Q ss_pred h
Q 001433 687 Q 687 (1079)
Q Consensus 687 q 687 (1079)
.
T Consensus 150 ~ 150 (188)
T PF03962_consen 150 A 150 (188)
T ss_pred H
Confidence 4
No 261
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=80.62 E-value=15 Score=36.71 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA--LEAESKIVQLKTAMHRLEEKVSD 676 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l--~~~~~~~~~l~~e~~~l~~~i~~ 676 (1079)
+....|..++.+|++.+.++.+.....+ .++.++...| ++.++++..|.+++...++++.+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~ve-------aEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVE-------AEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444433 3333333332 44444444454444444444443
No 262
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.18 E-value=1e+02 Score=34.19 Aligned_cols=110 Identities=24% Similarity=0.244 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 564 KLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1079)
Q Consensus 564 ~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~ 643 (1079)
..+.++..-+.++.+++...+.+.....+-...-.+ -++++..+..++--|++++++...+...-++.+-.+.
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes-------~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES-------LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444444444443333333333222111 2567888899999999999998888776666666655
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 644 KISEERLKQA--------LEAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 644 ~~~~~l~~~l--------~~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
....+....+ --++.+...|-.+...|++++-..|.|
T Consensus 256 ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 256 DQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5554333333 223444444555555555555544444
No 263
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.88 E-value=39 Score=35.45 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 001433 666 AMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 666 e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+..|..++++|..|+..+++
T Consensus 132 ~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555
No 264
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.82 E-value=67 Score=35.08 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~ 637 (1079)
+.+..+|++.|++-++-++..|.+-++
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 345566777777777777766655443
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.62 E-value=23 Score=38.80 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~ 676 (1079)
+++++..+...|..++..+..+++.++.....+++......+++.+++.++..++....++.--+.+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444333333333333
No 266
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.52 E-value=30 Score=30.32 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001433 618 NEKLKTLVSSLEKKIDETE 636 (1079)
Q Consensus 618 ~~~Le~~l~~l~~~l~ele 636 (1079)
+.-|+.++++|+++...+.
T Consensus 20 I~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344433333333
No 267
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.50 E-value=8.7 Score=39.42 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+.+..+..++..|++++.+++.....++.++..+ .+.+ ...++...+..++.++..+++.++.++.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L-------~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASL-------SSEP-----TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555554444444444444333333 2222 1134555666666666666666666665
No 268
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.47 E-value=8.3 Score=39.56 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
+..|..+...++..+..++.++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 269
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=79.40 E-value=94 Score=33.32 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-----------VQLKTAMHRLEEKVSD 676 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~-----------~~l~~e~~~l~~~i~~ 676 (1079)
......+..+...++..++.++..+.+++.++.+++.....+..+...++... ......++++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777766666665554443321 2233445555555555
Q ss_pred HHHHHH
Q 001433 677 METENQ 682 (1079)
Q Consensus 677 Le~e~~ 682 (1079)
++.+-+
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 554443
No 270
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=79.29 E-value=2.4e+02 Score=37.86 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~ 647 (1079)
....+...+...++.+.+.+....+++.++..++.+..
T Consensus 298 t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~ 335 (1294)
T KOG0962|consen 298 TDEELGELLSNFEERLEEMGEKLRELEREISDLNEERS 335 (1294)
T ss_pred chHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555555555555554433
No 271
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.12 E-value=87 Score=40.67 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=8.8
Q ss_pred hhHhhhhhchHHHHhHHHHhhh
Q 001433 85 FEQFCINLTNEKLQQHFNQHVF 106 (1079)
Q Consensus 85 feqlciNyanEkLq~~f~~~~f 106 (1079)
|+|+--++..|-|. =||..||
T Consensus 113 Y~~~v~p~i~eVl~-GyNCTIF 133 (1041)
T KOG0243|consen 113 YDQAVSPIIKEVLE-GYNCTIF 133 (1041)
T ss_pred HHHHHHHHHHHHhc-cCCceEE
Confidence 44444444444332 2344444
No 272
>PRK00106 hypothetical protein; Provisional
Probab=78.86 E-value=1.7e+02 Score=35.87 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=8.3
Q ss_pred ccHHHHHHHHHHHHHH
Q 001433 946 SHWQSIIDSLNTLLST 961 (1079)
Q Consensus 946 ~~~~~il~~L~~~~~~ 961 (1079)
.+++..++.|..+=.+
T Consensus 451 ~s~~~~i~rl~~lE~i 466 (535)
T PRK00106 451 ESMENYIKRLRDLEEI 466 (535)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3455555555555444
No 273
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.53 E-value=1.1e+02 Score=33.08 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=12.2
Q ss_pred hCCCCccChHHHHHHHh
Q 001433 304 AGYPTRKPFDEFVDRFG 320 (1079)
Q Consensus 304 ~Gyp~r~~~~~F~~ry~ 320 (1079)
-.||+|-.+++|+..-.
T Consensus 122 idfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 122 IDFPSRHDWDDFFMDAK 138 (445)
T ss_pred CCCCcccchHHHHhhhh
Confidence 36888888888876443
No 274
>PRK10869 recombination and repair protein; Provisional
Probab=77.35 E-value=1.9e+02 Score=35.73 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
+..+..|+.+++.+++++..+-.++...|++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666664
No 275
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.95 E-value=1.5e+02 Score=34.32 Aligned_cols=20 Identities=10% Similarity=0.434 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001433 564 KLQSALQEMQLQFKESKEKL 583 (1079)
Q Consensus 564 ~L~~~~~~le~~l~~~~~~l 583 (1079)
...++++.+..++++++.++
T Consensus 306 ~~rkelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 306 TSRKELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555554443
No 276
>PRK04406 hypothetical protein; Provisional
Probab=76.87 E-value=18 Score=31.80 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 001433 628 LEKKIDETEKKFE 640 (1079)
Q Consensus 628 l~~~l~ele~~~~ 640 (1079)
++.++.++|.+++
T Consensus 9 le~Ri~~LE~~lA 21 (75)
T PRK04406 9 LEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 277
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.68 E-value=51 Score=28.95 Aligned_cols=9 Identities=44% Similarity=0.697 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001433 677 METENQILR 685 (1079)
Q Consensus 677 Le~e~~~lr 685 (1079)
|+.++..++
T Consensus 51 L~~en~qLk 59 (79)
T PRK15422 51 LERENNHLK 59 (79)
T ss_pred HHHHHHHHH
Confidence 333333333
No 278
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.43 E-value=1.9e+02 Score=35.17 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
+.++..|+.+.+..++....+-+..+
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 279
>PF15456 Uds1: Up-regulated During Septation
Probab=76.32 E-value=44 Score=32.43 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-----------LKQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 607 ~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l-----------~~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
..++++.|.+|...|...++.++.++. ++.++.++-.....+ ...+.+.+..+......++++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999999999999999999888 776666554443333 01233344444555555555555555
Q ss_pred hHHHHHHHHHHh
Q 001433 676 DMETENQILRQQ 687 (1079)
Q Consensus 676 ~Le~e~~~lrqq 687 (1079)
.++......++.
T Consensus 99 ~le~R~~~~~~r 110 (124)
T PF15456_consen 99 KLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHHHHHH
Confidence 555555555553
No 280
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=76.02 E-value=10 Score=34.00 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 616 ~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
.|++.+++.+...+.+++..+.++...+- -.+.-..+++++..+.+.+...|.+++.|++++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eL-----------s~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRREL-----------SPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCC-----------ChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 45555666666666555555544432210 012234566888888888888888898888865
No 281
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.62 E-value=1.1e+02 Score=38.46 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=6.7
Q ss_pred CCchHHHHHHHHh
Q 001433 770 KPVAAFTIYKCLL 782 (1079)
Q Consensus 770 ~P~~A~il~~c~r 782 (1079)
.|...=||++++.
T Consensus 414 ~~~~~Giipral~ 426 (670)
T KOG0239|consen 414 TPEDPGIIPRALE 426 (670)
T ss_pred CcccCCccHHHHH
Confidence 3444455555555
No 282
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.23 E-value=15 Score=31.60 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=4.7
Q ss_pred HHHhHHHHHHHHH
Q 001433 673 KVSDMETENQILR 685 (1079)
Q Consensus 673 ~i~~Le~e~~~lr 685 (1079)
+|..|+.++..|.
T Consensus 33 ~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 33 QIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 283
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=75.23 E-value=1.1e+02 Score=31.72 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ----ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~----l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..|...+.+|+++..+|+.-.--+.+...+-++...+.+.= ..-..+++..+++++++|+.+..+|-.||..|+.-
T Consensus 58 R~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKEl 137 (195)
T PF10226_consen 58 RGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKEL 137 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444455555555555544433333333333322222211 23356777888999999999999999999988884
Q ss_pred h
Q 001433 688 S 688 (1079)
Q Consensus 688 ~ 688 (1079)
-
T Consensus 138 c 138 (195)
T PF10226_consen 138 C 138 (195)
T ss_pred H
Confidence 3
No 284
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=75.11 E-value=63 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 651 ~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
.+++..+..+..+++....++.++.+++.++.
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 285
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.84 E-value=81 Score=36.36 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=8.4
Q ss_pred cchhhhhHHHHHHHH
Q 001433 815 MAYWLSNTSTLLFLL 829 (1079)
Q Consensus 815 l~fWLSN~~~Ll~~l 829 (1079)
+-.|=-+..+++|-|
T Consensus 243 ~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL 257 (459)
T ss_pred eeeeeccchhhhhhh
Confidence 345666666666544
No 286
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.76 E-value=72 Score=35.95 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~ 676 (1079)
...|.-+++.|+..++++++.+.++.++..+..++.+.+......+..++..++.++...++-|++
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888888887777777777777777777888888888888888877744
No 287
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.59 E-value=58 Score=34.21 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 617 e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
++-.|+..+.++...+...+.....+..........++..+..+.....+..-+++++..++.|+..|+...
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 333444444455555555555555444444444445555566666666677777778888888888888754
No 288
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.54 E-value=95 Score=36.31 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001433 661 VQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le 678 (1079)
+.+++-++..+.+|.++|
T Consensus 301 Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445666677777777777
No 289
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.38 E-value=67 Score=29.71 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 660 IVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
...++.+++.++..+..++.++..++
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 290
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=74.04 E-value=2.4e+02 Score=35.36 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDM-EEAKTQENAKLQSALQEMQLQFKESK 580 (1079)
Q Consensus 525 ~L~~~~~~LE~k~~el~~rl~~E~~~~~~l-e~~~~~e~~~L~~~~~~le~~l~~~~ 580 (1079)
-|+-.+.+|.+++.-|.++|.+.++....- ...-.-|...|+..+.-|+.++.+..
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~ 447 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESL 447 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666322110000 00001244555665666666555543
No 291
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.63 E-value=84 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 647 ~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+.++++..+..+..+++..+.++.++.+++..+..+-++
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555556666667777777777777777777666553
No 292
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.02 E-value=1.3e+02 Score=31.60 Aligned_cols=9 Identities=33% Similarity=0.697 Sum_probs=3.9
Q ss_pred HHHhHhHHH
Q 001433 500 TQCAWRGKV 508 (1079)
Q Consensus 500 iQ~~~R~~~ 508 (1079)
+.|.-||.+
T Consensus 77 i~C~ERGlL 85 (189)
T PF10211_consen 77 IDCPERGLL 85 (189)
T ss_pred hCcHHHhHH
Confidence 344444443
No 293
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.84 E-value=3.2e+02 Score=36.13 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHH
Q 001433 950 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQL 987 (1079)
Q Consensus 950 ~il~~L~~~~~~l~~~~v~~~l~~Q~f~qlf~~ina~l 987 (1079)
..+..++.+-..+...+++..+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666665555555555555555554443
No 294
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=72.73 E-value=1.1e+02 Score=35.63 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
..-..++++..++.++.--+..++.|+..+
T Consensus 240 q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 240 QLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 334556677777777777777777777654
No 295
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.66 E-value=2.4e+02 Score=34.62 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001433 614 LTSENEKL 621 (1079)
Q Consensus 614 L~~e~~~L 621 (1079)
|+.++.++
T Consensus 342 L~~eL~~~ 349 (522)
T PF05701_consen 342 LEAELNKT 349 (522)
T ss_pred HHHHHHHH
Confidence 33333333
No 296
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.57 E-value=1.2e+02 Score=31.65 Aligned_cols=26 Identities=38% Similarity=0.504 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 520 ARETGALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 520 a~~~~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
..++..|+.....|+.++.+++.+.+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665555
No 297
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.52 E-value=28 Score=41.22 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 629 ~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
..++.++|.+.+++..+.++...+++++++.+.+-+.++..|+..|+.-+...+++++++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344556677777777777777778888888888888888888888888888888888753
No 298
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.34 E-value=1.2 Score=56.77 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=3.2
Q ss_pred HHHHhhcc
Q 001433 1014 ELWCCQAK 1021 (1079)
Q Consensus 1014 e~W~~~~~ 1021 (1079)
..|+...+
T Consensus 697 ~~~v~~~~ 704 (722)
T PF05557_consen 697 EFWVEERN 704 (722)
T ss_dssp HHHTTTS-
T ss_pred HHHHHcCC
Confidence 34554433
No 299
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.30 E-value=58 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 647 ~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
..+..+.+.++..+..+++..+.++.++.+++..+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666666666666554
No 300
>PF13166 AAA_13: AAA domain
Probab=72.23 E-value=2.8e+02 Score=35.32 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..++..+..++..+..++..+..++.++..++.+
T Consensus 420 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 420 KELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555666665555554
No 301
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=72.10 E-value=96 Score=39.04 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=11.0
Q ss_pred CCCCchHHHHHHHHh
Q 001433 768 NGKPVAAFTIYKCLL 782 (1079)
Q Consensus 768 ~~~P~~A~il~~c~r 782 (1079)
+-.|.+.+-||..+.
T Consensus 419 Giipral~~lF~~~~ 433 (670)
T KOG0239|consen 419 GIIPRALEKLFRTIT 433 (670)
T ss_pred CccHHHHHHHHHHHH
Confidence 345777888887777
No 302
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=71.93 E-value=77 Score=30.41 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE---------------RLKQALEAESKIVQLKTAMHRLEEK 673 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~---------------l~~~l~~~~~~~~~l~~e~~~l~~~ 673 (1079)
.+.+.|..+...+-.+...++..+.+.++.+.++++.-++ ...-..+++++...++..++.|+.+
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQ 92 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666553222 1112344566666667777777777
Q ss_pred HHhHHHHHHHHHHh
Q 001433 674 VSDMETENQILRQQ 687 (1079)
Q Consensus 674 i~~Le~e~~~lrqq 687 (1079)
.+.++++++.|+..
T Consensus 93 e~~l~e~l~eLq~~ 106 (119)
T COG1382 93 EEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777764
No 303
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.79 E-value=1.2e+02 Score=37.77 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 658 ~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+..|...+..|++...+.-..++.++.+
T Consensus 226 etl~~L~~~v~~l~~~k~qr~~kl~~l~~~ 255 (660)
T KOG4302|consen 226 ETLDRLDKMVKKLKEEKKQRLQKLQDLRTK 255 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555543
No 304
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.55 E-value=1.5e+02 Score=34.44 Aligned_cols=9 Identities=22% Similarity=0.745 Sum_probs=5.5
Q ss_pred HhHhHHHHH
Q 001433 502 CAWRGKVAR 510 (1079)
Q Consensus 502 ~~~R~~~aR 510 (1079)
.-||.++.+
T Consensus 216 kDWR~hleq 224 (359)
T PF10498_consen 216 KDWRSHLEQ 224 (359)
T ss_pred chHHHHHHH
Confidence 567776544
No 305
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.93 E-value=2.4e+02 Score=33.91 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
....++.+.+.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666655554
No 306
>PRK02119 hypothetical protein; Provisional
Probab=70.79 E-value=27 Score=30.51 Aligned_cols=7 Identities=43% Similarity=0.520 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001433 631 KIDETEK 637 (1079)
Q Consensus 631 ~l~ele~ 637 (1079)
++.++|.
T Consensus 10 Ri~~LE~ 16 (73)
T PRK02119 10 RIAELEM 16 (73)
T ss_pred HHHHHHH
Confidence 3333333
No 307
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.47 E-value=2.4e+02 Score=33.83 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
+...++...+.++..+++++...+..+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555554443
No 308
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.27 E-value=33 Score=35.91 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 663 LKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+++++++.++++.+.+.+.+++|
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 309
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.13 E-value=71 Score=33.45 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 001433 666 AMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 666 e~~~l~~~i~~Le~e~~~l 684 (1079)
++.+++..+..++++....
T Consensus 160 ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333
No 310
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.07 E-value=17 Score=43.01 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=7.1
Q ss_pred cccHHHHHHHHHH
Q 001433 945 SSHWQSIIDSLNT 957 (1079)
Q Consensus 945 ~~~~~~il~~L~~ 957 (1079)
....|++++.+..
T Consensus 445 ~~~~d~~~~~~~~ 457 (475)
T PRK13729 445 GFNTDQMLKQLGN 457 (475)
T ss_pred CCCHHHHHHHHhc
Confidence 3456666665543
No 311
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=70.03 E-value=86 Score=29.19 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 623 TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 623 ~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.++..|+....-+.+..-+-.....++...|..-+..+++++.+++.|.=+...|......|+.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333344444444444444444444444444444444444443
No 312
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=69.99 E-value=40 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
+..++.|.+|+-.|+-.+--|++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667777888888777777777665
No 313
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.85 E-value=49 Score=34.67 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMET 679 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~ 679 (1079)
.+.+..++.....+++++.+.+-
T Consensus 158 ~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 158 DKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 314
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.84 E-value=1.9e+02 Score=32.37 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001433 530 KNKLEKQVEELTWRLQLEK 548 (1079)
Q Consensus 530 ~~~LE~k~~el~~rl~~E~ 548 (1079)
.+.||++.+.|++.++-|.
T Consensus 141 t~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEI 159 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777543
No 315
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.77 E-value=46 Score=36.38 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 652 ~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+..++++++.+...++..|+.++..|+.+|..|-.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555444443
No 316
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=69.69 E-value=1.6e+02 Score=31.34 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+.+.+..+-.+...|+.....|+..+..|++
T Consensus 167 ~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 167 QLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555554
No 317
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.56 E-value=1.2e+02 Score=31.73 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 524 GALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 524 ~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
..|++....++.++.+++.+++
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 318
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.35 E-value=82 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
++++.+..++..++.++.++..++.++..+++
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554
No 319
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.14 E-value=1.9e+02 Score=31.98 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
+...+......+.+++..+.+......+.+.........+++.+++...+++......+.|.
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555554444444444444444444444444444444444433333
No 320
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.14 E-value=24 Score=30.39 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001433 663 LKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.++++..|+.++..|.+.+..+.
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333334444444444444333
No 321
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.41 E-value=2.2e+02 Score=32.40 Aligned_cols=79 Identities=13% Similarity=0.251 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 607 ~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
-.++.++++..+.+-.+-+..++.+++.+-+++..++++...+..+-+.....+..+-.+...+..++..+...++.|+
T Consensus 221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666667777777777777777777777777777666666665555555555555555555555544
No 322
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.33 E-value=1.8e+02 Score=34.15 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001433 522 ETGALQAAKNKLEKQVEELT 541 (1079)
Q Consensus 522 ~~~~L~~~~~~LE~k~~el~ 541 (1079)
++..+++....|+.+++.|+
T Consensus 220 el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKLK 239 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555444443
No 323
>PRK00846 hypothetical protein; Provisional
Probab=68.25 E-value=31 Score=30.36 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 001433 663 LKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
.+..+..|+.++..|.+.++.
T Consensus 39 qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 39 ARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333
No 324
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=67.92 E-value=2.7e+02 Score=33.40 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 521 ~~~~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
.+-.++.+...++.+.|..|+..++
T Consensus 258 ~E~~~l~eq~~~ld~AV~~Ltk~v~ 282 (531)
T PF15450_consen 258 SEESKLLEQCRKLDEAVAQLTKFVQ 282 (531)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445566666666666666665554
No 325
>PLN03188 kinesin-12 family protein; Provisional
Probab=67.90 E-value=4.2e+02 Score=35.54 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=11.1
Q ss_pred cccccccCcHHHHHHhhc
Q 001433 120 WSYIEFVDNQDILDLIEK 137 (1079)
Q Consensus 120 ~~~i~~~dn~~~idli~~ 137 (1079)
.++++.+ |..+.||+..
T Consensus 232 vSyLEIY-NEkI~DLLsp 248 (1320)
T PLN03188 232 CSFLEIY-NEQITDLLDP 248 (1320)
T ss_pred EEEEeee-cCcceecccc
Confidence 3455555 5668999864
No 326
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.88 E-value=43 Score=31.39 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
-+.+-.+..+...+..++++++.+...+-+++..+.+.. ...+++..+...+..++..++.++..+++++..+
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777766655555555544321 1122333344445555555555555555555443
No 327
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=67.60 E-value=2.3e+02 Score=32.39 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+--+.++.=|+.+|..|++|+.....
T Consensus 515 RVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 515 RVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666777777777777765443
No 328
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.58 E-value=2.4e+02 Score=32.58 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccccc
Q 001433 531 NKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE--------KLMKEIEVAKKEAEKVPVVQE 602 (1079)
Q Consensus 531 ~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~--------~l~~e~~~~~~~~ee~~~~~e 602 (1079)
.+-..+..++-..+++...+....-++...+...|..++.+..++++.+.+ .-+....-.+...++..+++-
T Consensus 9 ~e~nqkrk~~~~a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa 88 (542)
T KOG0993|consen 9 QEFNQKRKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQA 88 (542)
T ss_pred HHHHHhhhhcccchhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHH
Q ss_pred cccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 603 VPVI------------DHAVVEELTSENEKLKTLVSSLEKKID------ETEKKFEETSKISEERLKQALEAESKIVQLK 664 (1079)
Q Consensus 603 ~~~~------------~~~~~~~L~~e~~~Le~~l~~l~~~l~------ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~ 664 (1079)
.... -+.....+..--.+++.++.+++..+. .++.+..+.....+++..-+.-.++.+..+.
T Consensus 89 ~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk 168 (542)
T KOG0993|consen 89 SQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELK 168 (542)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 001433 665 TAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 665 ~e~~~l~~~i~~Le~e~~~ 683 (1079)
+.+.+.++.|.+|+.+.++
T Consensus 169 ~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 169 KKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHhHHHHHHHHHhhhcc
No 329
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.54 E-value=52 Score=38.94 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~-~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.+..|-.+.+.++.+++.+..+.+.+.++.+++.+.......++..+ +....+++++.+.|++++..++..+..|+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544444433333333322 122233444444444444444444444433
No 330
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.35 E-value=1.9e+02 Score=31.26 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001433 567 SALQEMQLQFKES 579 (1079)
Q Consensus 567 ~~~~~le~~l~~~ 579 (1079)
.++.++....+++
T Consensus 59 ~~~~~~~~~~~k~ 71 (225)
T COG1842 59 RKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 331
>PF15294 Leu_zip: Leucine zipper
Probab=67.31 E-value=2.1e+02 Score=31.79 Aligned_cols=135 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 001433 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE---------KLMKEIEVAK 591 (1079)
Q Consensus 521 ~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~---------~l~~e~~~~~ 591 (1079)
.++.+|++.+..|.+++..++.+.. ....|..+++.++.+++........ ++..-...+.
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at-----------~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQAT-----------SALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHH
Q ss_pred HHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001433 592 KEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ---ALEAESKIVQLKTAMH 668 (1079)
Q Consensus 592 ~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~---l~~~~~~~~~l~~e~~ 668 (1079)
.+..++ +......++..+.|++.+......+-.....+.-.+++.++.-.+ ......-+..-..+++
T Consensus 201 ~lK~e~----------ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiK 270 (278)
T PF15294_consen 201 ALKSEL----------EKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIK 270 (278)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHH
Q ss_pred HHHHHHHh
Q 001433 669 RLEEKVSD 676 (1079)
Q Consensus 669 ~l~~~i~~ 676 (1079)
+|+.++..
T Consensus 271 eLRkrl~k 278 (278)
T PF15294_consen 271 ELRKRLAK 278 (278)
T ss_pred HHHHHhcC
No 332
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.22 E-value=2.8e+02 Score=33.32 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHhhhccCCCcccchhhhhHHH
Q 001433 803 GSAIENEDDNDHMAYWLSNTST 824 (1079)
Q Consensus 803 ~~~i~~~~d~~~l~fWLSN~~~ 824 (1079)
..+|....+..+-.-|++|...
T Consensus 619 ~~~~~~~~ln~~d~~~~~~~~~ 640 (654)
T KOG4809|consen 619 LAAVAMDVLNTGDVVWLLNVAA 640 (654)
T ss_pred HHhcccCCCCCCcccccccChh
Confidence 3445444555556667776653
No 333
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=67.05 E-value=48 Score=31.18 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 617 e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
...++.+...++++++.+.+.+.-.+.....++..++.++.++...... -.....++..++.+++..++.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666555444333222 345556777777777766664
No 334
>PLN02939 transferase, transferring glycosyl groups
Probab=67.05 E-value=4e+02 Score=35.00 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001433 561 ENAKLQSALQEMQLQFKE 578 (1079)
Q Consensus 561 e~~~L~~~~~~le~~l~~ 578 (1079)
|+--|+.+++-++.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (977)
T PLN02939 234 ENMLLKDDIQFLKAELIE 251 (977)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 334444445544444443
No 335
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.00 E-value=22 Score=41.96 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 001433 631 KIDETEKKFEETS 643 (1079)
Q Consensus 631 ~l~ele~~~~e~~ 643 (1079)
+..++|++++.++
T Consensus 77 kasELEKqLaaLr 89 (475)
T PRK13729 77 TAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 336
>smart00338 BRLZ basic region leucin zipper.
Probab=66.57 E-value=62 Score=27.32 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 648 ~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
.-...+.+++.++..|+.+...|..++..|+.++..++++.
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667777778888888888888888888888877653
No 337
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=66.30 E-value=2.1e+02 Score=33.40 Aligned_cols=20 Identities=5% Similarity=0.305 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 001433 663 LKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 663 l~~e~~~l~~~i~~Le~e~~ 682 (1079)
...++-..++++..++.+..
T Consensus 237 ~~~q~~~~~del~Sle~q~~ 256 (447)
T KOG2751|consen 237 FQRQLIEHQDELDSLEAQIE 256 (447)
T ss_pred HHHhhhcccchHHHHHHHHH
Confidence 33334444444444444443
No 338
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=66.14 E-value=64 Score=29.28 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001433 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT--------------QENAKLQSALQEMQLQFKESKEK 582 (1079)
Q Consensus 526 L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~--------------~e~~~L~~~~~~le~~l~~~~~~ 582 (1079)
.......||.+|.+|+.+|+.|...+..++.... ....+|-.++.-+|.++..++..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999888877655 23345555566666555555444
No 339
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.98 E-value=64 Score=27.13 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 652 ~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.+.+++..+..|+.+...|..++..|+.++..|+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555566666666666666666555543
No 340
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=65.86 E-value=5.9 Score=50.56 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 656 AESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 656 ~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
++.++..|+.++..|+.++..|+.+++
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 341
>PRK04325 hypothetical protein; Provisional
Probab=65.77 E-value=40 Score=29.52 Aligned_cols=6 Identities=50% Similarity=0.434 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001433 632 IDETEK 637 (1079)
Q Consensus 632 l~ele~ 637 (1079)
+.++|.
T Consensus 11 i~~LE~ 16 (74)
T PRK04325 11 ITELEI 16 (74)
T ss_pred HHHHHH
Confidence 333333
No 342
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=65.74 E-value=4.6e+02 Score=35.24 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=13.3
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHH
Q 001433 23 ITKWLDPEAAAVSRDALAKIVYSR 46 (1079)
Q Consensus 23 i~~~l~~~~a~~~rdalak~lY~~ 46 (1079)
+...-|..+=...-|+++=+||..
T Consensus 34 ~I~G~tGaGKStildai~~aLyg~ 57 (1047)
T PRK10246 34 AITGPTGAGKTTLLDAICLALYHE 57 (1047)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444455566666666653
No 343
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.32 E-value=2e+02 Score=30.79 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 561 ENAKLQSALQEMQLQFKESKEK 582 (1079)
Q Consensus 561 e~~~L~~~~~~le~~l~~~~~~ 582 (1079)
....++.++.+.+....+++.+
T Consensus 52 ~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 52 NQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544
No 344
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=64.87 E-value=1.1e+02 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 651 ~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
+++.+.+..+..|+..+..|.+-..+||....
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555666666666666666666555443
No 345
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=64.85 E-value=2e+02 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
..|+..++..+-++..|+..++.-
T Consensus 164 ~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 164 LALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 346
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=64.82 E-value=70 Score=32.68 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i 674 (1079)
+.+.....-...|+.+++....+...+.+.+...+...++.+++-+++..++..+.+.++.++.++
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el 139 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWEL 139 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666665555555555444444444444444444343333333
No 347
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=64.78 E-value=1.5e+02 Score=29.63 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 656 ~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.+...+++..+.+|-..+..++.++..+.+
T Consensus 106 l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 106 LEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 348
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.76 E-value=1.9e+02 Score=34.88 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
..|..+++.++..+.+++.++++|.+
T Consensus 518 ~~L~~ElE~~~~~~~~~e~~~evL~~ 543 (852)
T KOG4787|consen 518 IDLVSELEGKIPTIDEIEQCCEVLAA 543 (852)
T ss_pred HHHHHHHHhhcCcHhHHHHHHHHHHH
Confidence 56777777777777888888888876
No 349
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=64.71 E-value=85 Score=35.69 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTA-MHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e-~~~l~~~i~~Le~e~~~lr 685 (1079)
+.++|+++-++|++......++++++.+-....-........++.++.+.+.+++.. -.+-.+.++++++++.+.+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555555555444555555555555555444321 1122334444444444433
No 350
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.70 E-value=2.7e+02 Score=32.21 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
...++.|..|...|+..+...++...
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777777777777777766544
No 351
>PTZ00121 MAEBL; Provisional
Probab=64.44 E-value=5e+02 Score=35.24 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=29.5
Q ss_pred HHHHHHHH----HHHHHHHhCCCCHHHH---HHHHHHHHHhHhHHHHHhhhh
Q 001433 949 QSIIDSLN----TLLSTLKQNFVPPVLV---QKIFTQTFSYINVQLFNSLLL 993 (1079)
Q Consensus 949 ~~il~~L~----~~~~~l~~~~v~~~l~---~Q~f~qlf~~ina~lfN~Ll~ 993 (1079)
+-.|.+++ .++++|+.-+-+|... .+-|+-+.||-++-+|=-||+
T Consensus 1980 dYCLkYFn~nS~eYynCmk~EF~dp~Y~CF~K~~fS~~~YfAggGii~ilLl 2031 (2084)
T PTZ00121 1980 DFCLKYFDHNSNEYYDCMKEEFADKDYKCFKKKEFSNMAYFAGAGIVLILLF 2031 (2084)
T ss_pred HHHHHHcCCCchHHHhhHHhhccCcchhhhcccCcccceeeccccHHHHHHH
Confidence 34555554 3788888777777753 355666777777766666654
No 352
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.41 E-value=6.9 Score=47.64 Aligned_cols=23 Identities=57% Similarity=0.729 Sum_probs=15.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHH
Q 001433 421 RREASCLRIQRDLRMYLAKKAYK 443 (1079)
Q Consensus 421 r~~~AAi~IQ~~~R~~~~rk~y~ 443 (1079)
|+++||+.||++||+|.+|++|.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776654
No 353
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.39 E-value=3e+02 Score=32.53 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 642 TSKISEERLKQALEAESKIVQLKT 665 (1079)
Q Consensus 642 ~~~~~~~l~~~l~~~~~~~~~l~~ 665 (1079)
+.++++..++++-.++....+.++
T Consensus 483 LkrEKe~~EqefLslqeEfQk~ek 506 (527)
T PF15066_consen 483 LKREKETREQEFLSLQEEFQKHEK 506 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 354
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=64.27 E-value=1.1e+02 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 656 ~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.............-+.+|++|..||+.+|.
T Consensus 66 Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 66 LRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3344445556666667788888889988887
No 355
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.09 E-value=2.1e+02 Score=30.81 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 516 LKMAARETGALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 516 l~~~a~~~~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
+.++...+..+......++.++.+++.+.+
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~ 69 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQARAE 69 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555556665555544433
No 356
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.84 E-value=96 Score=28.72 Aligned_cols=79 Identities=29% Similarity=0.321 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001433 607 DHAVVEELTSENEKLKTLVSSLEKKIDETE---------KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1079)
Q Consensus 607 ~~~~~~~L~~e~~~Le~~l~~l~~~l~ele---------~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~L 677 (1079)
.....+.+..+..+|+.+++.|+..+..+. +++..++...+....++. ..+...+..++..++.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR--~rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVR--SRKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777776654221 122222222222222221 223345677888888888888
Q ss_pred HHHHHHHHHh
Q 001433 678 ETENQILRQQ 687 (1079)
Q Consensus 678 e~e~~~lrqq 687 (1079)
++++..|+++
T Consensus 88 ~~en~~L~~~ 97 (100)
T PF01486_consen 88 EEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 357
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.81 E-value=4.2e+02 Score=34.11 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
+.++..|+.+.+-.++....+-...++.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445554444444444444444443
No 358
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.78 E-value=1.7e+02 Score=29.66 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 558 KTQENAKLQSALQEMQLQFKES 579 (1079)
Q Consensus 558 ~~~e~~~L~~~~~~le~~l~~~ 579 (1079)
.+.|...++.++++++.++...
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~ 46 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEV 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 359
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.67 E-value=1.8e+02 Score=30.29 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 653 l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
-...+++...|+.+....+.++..|...+..|+.+.
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666677777777777777777777654
No 360
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.35 E-value=2.8e+02 Score=31.95 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 513 LRKLKMAARETGALQAAKNKLEKQV 537 (1079)
Q Consensus 513 ~~~l~~~a~~~~~L~~~~~~LE~k~ 537 (1079)
+.+|..+...+..++.....++..+
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~L 31 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPEL 31 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443333
No 361
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=63.25 E-value=99 Score=32.03 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 520 ARETGALQAAKNKLEKQVEELTWRLQLEKRMR----VDMEEAKTQENAKLQSALQEMQLQFK 577 (1079)
Q Consensus 520 a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~----~~le~~~~~e~~~L~~~~~~le~~l~ 577 (1079)
..+...|.-.+.+||.++.++..+++..+.+. .-.|+....++.-|++.+..|+++++
T Consensus 191 ~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 191 TTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777888888888887777443322 22222333455555555555555554
No 362
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=63.00 E-value=3.8e+02 Score=33.32 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=4.1
Q ss_pred CCCchHH
Q 001433 769 GKPVAAF 775 (1079)
Q Consensus 769 ~~P~~A~ 775 (1079)
|.|+++-
T Consensus 464 Gv~s~~~ 470 (582)
T PF09731_consen 464 GVPSEAQ 470 (582)
T ss_pred CCCCHHH
Confidence 6676643
No 363
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.90 E-value=3.8e+02 Score=33.24 Aligned_cols=18 Identities=6% Similarity=0.230 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001433 624 LVSSLEKKIDETEKKFEE 641 (1079)
Q Consensus 624 ~l~~l~~~l~ele~~~~e 641 (1079)
.++++....+++++++..
T Consensus 323 s~e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQ 340 (563)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 364
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.82 E-value=21 Score=30.35 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001433 658 SKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 658 ~~~~~l~~e~~~l~~~i~ 675 (1079)
.++..++.++..+++.+.
T Consensus 46 ~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 46 EKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 365
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=62.65 E-value=2e+02 Score=30.05 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1079)
Q Consensus 616 ~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~ 672 (1079)
.+...|+..+...+..+...+.-......+..+....|+..+..+..|...+...+.
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554444444444444444444444444444444444444333
No 366
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=62.60 E-value=3.1e+02 Score=32.17 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 001433 506 GKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLE-------------------------------------- 547 (1079)
Q Consensus 506 ~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E-------------------------------------- 547 (1079)
....+.--+.+..+.+.+..++..+..|+..+.+-...+...
T Consensus 129 ~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ 208 (384)
T PF03148_consen 129 ENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNE 208 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHH
Q ss_pred -----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Q 001433 548 -----KRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLK 622 (1079)
Q Consensus 548 -----~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le 622 (1079)
++.+.....-+..-..-+.....++..+....+..+.....+......++ +....+...++..++
T Consensus 209 ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~L----------e~ql~~~~~ei~~~e 278 (384)
T PF03148_consen 209 NIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNEL----------EWQLKKTLQEIAEME 278 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 623 TLVSSLEKKID-------------------------------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1079)
Q Consensus 623 ~~l~~l~~~l~-------------------------------ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 671 (1079)
..+..|++.+. .|-.+..++......+..++.+++..+..|......|+
T Consensus 279 ~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le 358 (384)
T PF03148_consen 279 KNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLE 358 (384)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHH
Q 001433 672 EKVSDMETEN 681 (1079)
Q Consensus 672 ~~i~~Le~e~ 681 (1079)
..|.....-+
T Consensus 359 ~di~~K~~sL 368 (384)
T PF03148_consen 359 EDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHH
No 367
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.48 E-value=2.5e+02 Score=31.05 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~ 657 (1079)
+..+..+...++..++.+...-..++.++++...+.+..+++|..++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555543
No 368
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=62.13 E-value=57 Score=33.05 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~ 646 (1079)
++.+...+..|+..+....+.+..+++++.+.+...
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677766666666666555554444433
No 369
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.06 E-value=1.5e+02 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 563 AKLQSALQEMQLQFKES 579 (1079)
Q Consensus 563 ~~L~~~~~~le~~l~~~ 579 (1079)
..+...++.++.+++.+
T Consensus 9 ~~l~~~~~~l~~~~~~l 25 (140)
T PRK03947 9 EELAAQLQALQAQIEAL 25 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 370
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.78 E-value=54 Score=28.29 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
++...+.+.+..+..++.++.-|-+.+..++.++
T Consensus 26 eLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 26 ELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3333334444445555555555555555554433
No 371
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=61.58 E-value=99 Score=33.23 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 653 l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
|..++.+...+-..+-+++..+..|+.|+..++++
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555443
No 372
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=61.33 E-value=2.4e+02 Score=30.47 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 624 ~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
.+.+|+.++.-.+...++++..-+++-.-++++...+...+..+--|++++.+.+.++..+++.
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444455566666666666666666666677777777777777777777777764
No 373
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.02 E-value=1.4e+02 Score=31.84 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 525 ALQAAKNKLEKQVEELT 541 (1079)
Q Consensus 525 ~L~~~~~~LE~k~~el~ 541 (1079)
+-++...++|..+.||+
T Consensus 87 rKKaRm~eme~~i~dL~ 103 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLT 103 (292)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555666665554
No 374
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.87 E-value=2.1e+02 Score=29.58 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=8.1
Q ss_pred HHHHhHHHHHHHHHHh
Q 001433 672 EKVSDMETENQILRQQ 687 (1079)
Q Consensus 672 ~~i~~Le~e~~~lrqq 687 (1079)
.++..++.+++..+-+
T Consensus 138 ~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 138 TEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555543
No 375
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.67 E-value=1.3e+02 Score=29.67 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
.+++.+..+++.+..+++++..+...+..+
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444333
No 376
>PRK00846 hypothetical protein; Provisional
Probab=60.63 E-value=79 Score=27.91 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 652 ~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
++.-.+..+..|.+.+...+..|..|+..+..+..
T Consensus 21 rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 21 RLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555544
No 377
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.30 E-value=77 Score=29.81 Aligned_cols=23 Identities=9% Similarity=0.368 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMET 679 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~ 679 (1079)
+..+.+++.+++.+..++..+..
T Consensus 71 ~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 71 QLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333344444444433333
No 378
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=60.09 E-value=3.3e+02 Score=31.73 Aligned_cols=35 Identities=31% Similarity=0.578 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELT 541 (1079)
Q Consensus 503 ~~R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~ 541 (1079)
.|++.+.+ .+.+.+.+...|...+..||..+..+.
T Consensus 84 ~Wk~el~~----ele~l~~E~~~L~~~k~rle~~L~~~~ 118 (421)
T KOG2685|consen 84 FWKGELDR----ELEDLAAEIDDLLHEKRRLERALNALA 118 (421)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45554433 355556677777777777777777664
No 379
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.84 E-value=89 Score=32.65 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
......+..++.++..|+..+...+.|++.|+|
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566677788888888888888888887764
No 380
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=59.65 E-value=2.7e+02 Score=30.86 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.8
Q ss_pred hCCCCccChHHHH
Q 001433 304 AGYPTRKPFDEFV 316 (1079)
Q Consensus 304 ~Gyp~r~~~~~F~ 316 (1079)
-|||--++.+.|.
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 4999989888875
No 381
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=59.17 E-value=3.6e+02 Score=32.05 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 001433 534 EKQVEELTWRLQ 545 (1079)
Q Consensus 534 E~k~~el~~rl~ 545 (1079)
|+-+.+|..+..
T Consensus 229 E~~VN~Ls~rar 240 (434)
T PRK15178 229 EQHVNTVSARMQ 240 (434)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 382
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.03 E-value=5.9e+02 Score=34.24 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLE 629 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~ 629 (1079)
-|.+|++.|+.+|.+.-
T Consensus 1177 ~~~~enk~l~~qlrdta 1193 (1320)
T PLN03188 1177 YLRDENKSLQAQLRDTA 1193 (1320)
T ss_pred HHHHhhHHHHHHHhhHH
Confidence 34444444444444433
No 383
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.95 E-value=78 Score=37.53 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
+++.+.++++.|+++.+.|+++......++...-. ..-.+++++..+++.+...++..+..|...++.+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~------~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQ------SETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555544444444433221 1123444455566666666777777776666543
No 384
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=58.13 E-value=2.2e+02 Score=36.36 Aligned_cols=168 Identities=14% Similarity=0.042 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHH
Q 001433 891 FKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPV 970 (1079)
Q Consensus 891 ~~qqL~~~~~~iy~~l~~~l~k~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~ 970 (1079)
+-+.+...+...-...++.+-..+..+|. -|-+....|..... .. ...+++.-..++.+|+.++..++.+-= .
T Consensus 528 ~~~~le~~v~~gL~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~~~--~~-~~~~T~ac~~vv~~L~~~~~~~~~~l~-~- 600 (710)
T PF07393_consen 528 FESRLEEKVNAGLNKGIDVLMNWVEFILS--EQKKTDFKPKEDDL--SL-DQQPTPACQEVVEFLERHCSLLKGSLD-G- 600 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCcccc--cc-ccCCCHHHHHHHHHHHHHHHHHHHHcc-c-
Confidence 44555555555566666666666666665 34444444321100 01 134567789999999999999877633 2
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhhc--cCCCCCcchhHHhhchHHHHHHHhhcccccccChHhhhhhHHHHHhHHhhcccC
Q 001433 971 LVQKIFTQTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKY 1048 (1079)
Q Consensus 971 l~~Q~f~qlf~~ina~lfN~Ll~r--~~~cs~s~g~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk~ 1048 (1079)
........=|+.-+|+.|+.. |--.|-.=|+++..=|...-+++.+-+ .....+.|+-|.+.++|+.+ +
T Consensus 601 ---~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~---~~~v~~~F~~L~~l~nl~~v---~ 671 (710)
T PF07393_consen 601 ---SNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWG---IPSVDEKFEALKELGNLFIV---D 671 (710)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhheee---c
Confidence 233344444666666666653 566677899999999999999999876 34566899999999999998 3
Q ss_pred cCCHHHHHhCcC-CCCCHHHHHHHHhh
Q 001433 1049 RISYDEITNDLC-PVSQFFLFVTVCVL 1074 (1079)
Q Consensus 1049 ~~~~~~i~~~~c-~~Ls~~Qi~~il~~ 1074 (1079)
+.++.+++.+.+ +.+++..|+..+++
T Consensus 672 ~~~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 672 PENLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHHHhhccccCCCHHHHHHHHHH
Confidence 456666655543 56899988887764
No 385
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.05 E-value=2.3e+02 Score=29.23 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 558 KTQENAKLQSALQEMQLQFKESKEKLM 584 (1079)
Q Consensus 558 ~~~e~~~L~~~~~~le~~l~~~~~~l~ 584 (1079)
.+.+...++.+.+.|+.+++.++.++.
T Consensus 71 ~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 71 RKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554443
No 386
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=58.01 E-value=49 Score=29.38 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 647 EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 647 ~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+++..++.+++..+..|-..+...+++...|+.||+.|++
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666667766665
No 387
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.78 E-value=4.1e+02 Score=32.07 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
..+.+.+..|.+++....++++.|+
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555554
No 388
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.69 E-value=1.1e+02 Score=25.66 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 644 ~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
.....++..+..++.....|..++..|+.++..|..+++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555666666666677777777777777776664
No 389
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.46 E-value=16 Score=29.89 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 658 ~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
++++-|.+.+.+|++++..|+.||..|++.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788889999999999999999999854
No 390
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=56.91 E-value=4.3e+02 Score=31.97 Aligned_cols=7 Identities=43% Similarity=0.942 Sum_probs=3.0
Q ss_pred ccceeee
Q 001433 352 GKTKVFL 358 (1079)
Q Consensus 352 G~tkVFl 358 (1079)
|+|.|++
T Consensus 152 G~tqI~I 158 (489)
T PF05262_consen 152 GKTQIVI 158 (489)
T ss_pred CCceEEE
Confidence 4444443
No 391
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.91 E-value=2.2e+02 Score=36.78 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=8.8
Q ss_pred eecc-ceeeeeccccccc
Q 001433 350 QIGK-TKVFLRAGQMADL 366 (1079)
Q Consensus 350 ~iG~-tkVFlr~~~~~~L 366 (1079)
.+|- .+||.+-|.-..+
T Consensus 367 ~i~~~~~i~~~ig~~~si 384 (782)
T PRK00409 367 EIPVFKEIFADIGDEQSI 384 (782)
T ss_pred cccccceEEEecCCccch
Confidence 4554 4666665544333
No 392
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=56.59 E-value=12 Score=34.67 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~e-le~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
....++..+..++.++++|-..|-+ .-+-.+...++. ..++.+...+++++.+.+..+..++.++..|+..
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~-------~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRER-------AALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666655532 222222222222 2333444455555555555556666666666653
No 393
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=56.50 E-value=2.6e+02 Score=29.37 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 001433 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1079)
Q Consensus 650 ~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~~~ 690 (1079)
+..+...+.++..++..++.|..+|.+...-+.+|+|....
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~ 168 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRK 168 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33445567777888888999999999999999999997543
No 394
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=56.11 E-value=3.3e+02 Score=30.38 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001433 558 KTQENAKLQSALQEMQLQF 576 (1079)
Q Consensus 558 ~~~e~~~L~~~~~~le~~l 576 (1079)
+..|+++|...+.+||..+
T Consensus 33 KV~EVEKLsqTi~ELEEai 51 (351)
T PF07058_consen 33 KVLEVEKLSQTIRELEEAI 51 (351)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355566666666655443
No 395
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.08 E-value=97 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
..+..+...+.+++..++.+...+..
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444
No 396
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=55.62 E-value=2.7e+02 Score=29.35 Aligned_cols=9 Identities=22% Similarity=0.328 Sum_probs=3.3
Q ss_pred HHhHHHHHH
Q 001433 674 VSDMETENQ 682 (1079)
Q Consensus 674 i~~Le~e~~ 682 (1079)
+...+.++.
T Consensus 122 l~~~~~e~~ 130 (201)
T PF12072_consen 122 LEEREEELE 130 (201)
T ss_pred HHHHHHHHH
Confidence 333333333
No 397
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.31 E-value=1.1e+02 Score=37.40 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~ 639 (1079)
.+.+.+|++++..++.++..++.++..++..+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555554444433
No 398
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.01 E-value=1.7e+02 Score=37.67 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=4.9
Q ss_pred ecccchhhcch
Q 001433 196 QTELFLDKNKD 206 (1079)
Q Consensus 196 ~~~~fl~kN~d 206 (1079)
....+++-|..
T Consensus 220 ep~~~~~ln~~ 230 (771)
T TIGR01069 220 EPQAIVKLNNK 230 (771)
T ss_pred EcHHHHHHHHH
Confidence 33335555543
No 399
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=54.55 E-value=2.7e+02 Score=28.95 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001433 665 TAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 665 ~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
....+.++.|..|+.||+.||..
T Consensus 153 ~~~~~~qe~i~qL~~EN~~LRel 175 (181)
T PF05769_consen 153 ENSQEEQEIIAQLETENKGLREL 175 (181)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888863
No 400
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.55 E-value=5.8e+02 Score=32.76 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001433 660 IVQLKTAMHRLEEKV 674 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i 674 (1079)
+..++.+.+-.++-.
T Consensus 372 ~~~L~R~~~~~~~lY 386 (726)
T PRK09841 372 VLRLSRDVEAGRAVY 386 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 401
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=54.26 E-value=1.6e+02 Score=32.34 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEK 630 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~ 630 (1079)
-+.-..++.+..++...+|++
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~ 100 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEE 100 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444433
No 402
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.09 E-value=1.2e+02 Score=30.76 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 628 LEKKIDETEKKFEETSKISEERLKQALEAESKI--VQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 628 l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~--~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
|..++..++.+...+.+.......++..+.+.+ .++++++.+|+.++..-++.+..++
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555556666666666655543 4555555555555555555555544
No 403
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=53.79 E-value=4.3e+02 Score=31.05 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=28.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 497 AITTQCAWRGKVARRELRKLKMA----ARETGALQAAKNKLEKQVEELTWRLQ 545 (1079)
Q Consensus 497 ~v~iQ~~~R~~~aRr~~~~l~~~----a~~~~~L~~~~~~LE~k~~el~~rl~ 545 (1079)
...+|+--.....++++.+++-+ +++.++++-....|+.++++++....
T Consensus 295 ~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 295 HLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred hhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445544455566666666543 45566666666666666666654433
No 404
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=53.76 E-value=1.5e+02 Score=25.99 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 617 ENEKLKTLVSSLEKKIDETEKK 638 (1079)
Q Consensus 617 e~~~Le~~l~~l~~~l~ele~~ 638 (1079)
.+.+|+.+.=+|+-++--+++.
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3333333333333333333333
No 405
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.70 E-value=2.1e+02 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001433 652 QALEAESKIVQLKTAMHRLEEKVSDM 677 (1079)
Q Consensus 652 ~l~~~~~~~~~l~~e~~~l~~~i~~L 677 (1079)
.+..+...+..++.++..+++.+...
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 406
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=53.69 E-value=1e+02 Score=36.79 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 646 ~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..-+..+++..+....+++..+.++++++.+++.|....|++
T Consensus 338 ~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 338 KDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333343333333445555555555555555555544443
No 407
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.56 E-value=21 Score=36.28 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 633 DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 633 ~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
+++|.++..+.+...=|+.+| ++.+.|..++.+|++++.+|+.|+
T Consensus 3 eD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444344333 223345666666666666666666
No 408
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.27 E-value=2.3e+02 Score=27.66 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=5.8
Q ss_pred HHHHHHHHhHHHHHH
Q 001433 668 HRLEEKVSDMETENQ 682 (1079)
Q Consensus 668 ~~l~~~i~~Le~e~~ 682 (1079)
..|+.+|.+.+..+.
T Consensus 103 ~~L~k~I~~~e~iI~ 117 (126)
T PF09403_consen 103 NKLDKEIAEQEQIID 117 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444333333
No 409
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.21 E-value=4.2e+02 Score=34.27 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.6
Q ss_pred ecccchhhcc
Q 001433 196 QTELFLDKNK 205 (1079)
Q Consensus 196 ~~~~fl~kN~ 205 (1079)
.....++-|.
T Consensus 225 ep~~~~~ln~ 234 (782)
T PRK00409 225 EPQSVVELNN 234 (782)
T ss_pred EcHHHHHHHH
Confidence 3434555454
No 410
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.14 E-value=1.1e+02 Score=38.93 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=23.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 001433 466 RFRRQTRASILIQSHCRKYLARLHYMKLKKAA 497 (1079)
Q Consensus 466 ~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~ 497 (1079)
+..++++.|+++|++|||+.+|++.+..-++.
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~ 55 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKLLFREE 55 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999988876665443
No 411
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=52.95 E-value=2.5e+02 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~ 644 (1079)
.++-+.+.+++|+..+..++..+.++......+..
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~ 129 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQ 129 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 412
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=52.92 E-value=4.3e+02 Score=30.80 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001433 532 KLEKQVEELTWRLQ 545 (1079)
Q Consensus 532 ~LE~k~~el~~rl~ 545 (1079)
+.+.+++++..++.
T Consensus 10 ~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 10 ENDQRLIDLNTELA 23 (459)
T ss_pred hhhhHHHHHHHHHH
Confidence 34444444444443
No 413
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.84 E-value=2e+02 Score=30.63 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 635 le~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
+|..+.++.++.+.+..+-+.++.....|-.+..++..+++.+.+++.+++++
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 33333333333333333333444444445555555555566666666666654
No 414
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.82 E-value=86 Score=29.61 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
..|+..+.++-++...|+-||+.||.
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 415
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.76 E-value=1.3e+02 Score=33.23 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES----------KIVQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~----------~~~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
++..+..|..+++-.+++..=+++-.....-+.+++.+-+.++++ .+..++.++.+|.++-.-|+.|+..
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELAR 84 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELAR 84 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333334444444444333 3466777777777777777777766
Q ss_pred HHH
Q 001433 684 LRQ 686 (1079)
Q Consensus 684 lrq 686 (1079)
.+=
T Consensus 85 aKV 87 (351)
T PF07058_consen 85 AKV 87 (351)
T ss_pred hhh
Confidence 553
No 416
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=52.65 E-value=49 Score=30.01 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
+...+-.++.-++.+|..||..+..|..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666655543
No 417
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.91 E-value=73 Score=37.92 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
-+.+-++..+..++..++++++.+..++-+++..+.+... ..+.+..+..++.++++.+++++..+++++..+-.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777766666666654322211 12234444455566666666666666666655444
No 418
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.89 E-value=2.9e+02 Score=30.37 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 001433 617 ENEKLKT 623 (1079)
Q Consensus 617 e~~~Le~ 623 (1079)
++.||+.
T Consensus 157 QN~KLEs 163 (305)
T PF15290_consen 157 QNKKLES 163 (305)
T ss_pred hHhHHHH
Confidence 3333333
No 419
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.64 E-value=29 Score=40.43 Aligned_cols=15 Identities=27% Similarity=0.466 Sum_probs=5.5
Q ss_pred HHHHHHhHHHHHHHH
Q 001433 670 LEEKVSDMETENQIL 684 (1079)
Q Consensus 670 l~~~i~~Le~e~~~l 684 (1079)
++.++..+++.+..+
T Consensus 170 ~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 420
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.01 E-value=75 Score=30.00 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q 001433 662 QLKTAMHRLEEKVSD 676 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~~ 676 (1079)
.|+-+...|++.+.+
T Consensus 40 ~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 40 RLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 421
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.90 E-value=3.4e+02 Score=29.09 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFE----ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~----e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
-+..|+..+..++..+..++++++++-..+. ++-.++..++.+-.+.-.++-+++.....|+.+|.+++.+...++
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555554433222 222333455555556666666666666666666666666665555
Q ss_pred H
Q 001433 686 Q 686 (1079)
Q Consensus 686 q 686 (1079)
+
T Consensus 217 ~ 217 (221)
T PF05700_consen 217 E 217 (221)
T ss_pred c
Confidence 4
No 422
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.55 E-value=7.3e+02 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.+.......++..+...++.+..++..+..++
T Consensus 413 ~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 413 EELEKELEELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444433
No 423
>PHA02414 hypothetical protein
Probab=49.98 E-value=1.5e+02 Score=26.94 Aligned_cols=48 Identities=27% Similarity=0.256 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 634 ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
+++...+++......+-+.+.--.++...+--++.+|++.|+.|++.+
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n 80 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESN 80 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444444444433333444444455555555555444433
No 424
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.87 E-value=5.9e+02 Score=31.52 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
....+.+.+..+++....|..|++.+++
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555
No 425
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.87 E-value=1.1e+02 Score=34.62 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCCCeeeeec
Q 001433 251 QLQQLLETLSSSEPHYIRCV 270 (1079)
Q Consensus 251 ~l~~Lm~~l~~t~~hfirCi 270 (1079)
-+..||..+....|-|-+-+
T Consensus 127 Liq~l~a~f~~~pP~ys~~~ 146 (365)
T KOG2391|consen 127 LIQELIAAFSEDPPVYSRSL 146 (365)
T ss_pred HHHHHHHHhcCCCccccCCC
Confidence 34455555556666555443
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.56 E-value=4.2e+02 Score=34.23 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.6
Q ss_pred HHHHhhc
Q 001433 8 EDSLCKR 14 (1079)
Q Consensus 8 ~~~l~~r 14 (1079)
...+..+
T Consensus 15 ~~~l~~~ 21 (771)
T TIGR01069 15 KENLLKQ 21 (771)
T ss_pred HHHHHHH
Confidence 3333333
No 427
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.24 E-value=17 Score=44.46 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=8.5
Q ss_pred hhhhhhhhHHhhhccch
Q 001433 399 RSAIHIQAACRGQLART 415 (1079)
Q Consensus 399 ~a~i~IQ~~~Rg~lar~ 415 (1079)
.|++.||+++|||++|+
T Consensus 31 ~aa~~iq~~lrsyl~Rk 47 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRK 47 (1096)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 428
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=49.00 E-value=7e+02 Score=32.09 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred cccccccCCccccCCchhH----h-hhhhchH----HHHhHHHHhhh
Q 001433 69 IGVLDIYGFESFKTNSFEQ----F-CINLTNE----KLQQHFNQHVF 106 (1079)
Q Consensus 69 IgvLDi~GFE~f~~Nsfeq----l-ciNyanE----kLq~~f~~~~f 106 (1079)
|-=|+||||=-|..-+|+- | .|==.|| .|+.|+..-+|
T Consensus 3 I~sl~I~gYGKFs~r~~df~~s~f~vI~G~NEAGKSTl~sFI~smlF 49 (984)
T COG4717 3 IQSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLF 49 (984)
T ss_pred eeEEEeeeccchhhhhhhccCCceEEEecCccccHHHHHHHHHHHHc
Confidence 4457888887665433331 0 1112343 46667777777
No 429
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.80 E-value=92 Score=37.39 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 652 ~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
.+..+.....++..+++++++++..|+++++..
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555556666666666666666666555
No 430
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=48.75 E-value=1.5e+02 Score=35.47 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 001433 36 RDALAKIVYSRL 47 (1079)
Q Consensus 36 rdalak~lY~~L 47 (1079)
...||-+||..+
T Consensus 5 Vs~lAgsIYREf 16 (832)
T KOG2077|consen 5 VSGLAGSIYREF 16 (832)
T ss_pred hhhhHHHHHHHH
Confidence 345777777543
No 431
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=48.59 E-value=5.9e+02 Score=31.09 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhccccc
Q 001433 532 KLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE----------KLMKEIEVAKKEAEKVPVVQ 601 (1079)
Q Consensus 532 ~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~----------~l~~e~~~~~~~~ee~~~~~ 601 (1079)
.+|...+++.++++ .+...+..+...++.+...+..|.. .+..+......+.++...+.
T Consensus 338 n~e~~~e~~~r~~e-----------~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~ 406 (607)
T KOG0240|consen 338 NLELTAEEWKRKLE-----------KKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSIT 406 (607)
T ss_pred hhHhhHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhh
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 602 e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
-.....+...+.++++...|.+++++...++....+-..+++..+.+....+..........+.+..++++.++.-+.+.
T Consensus 407 ~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~ 486 (607)
T KOG0240|consen 407 KLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEV 486 (607)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 001433 682 QIL 684 (1079)
Q Consensus 682 ~~l 684 (1079)
...
T Consensus 487 ~e~ 489 (607)
T KOG0240|consen 487 KEV 489 (607)
T ss_pred HHH
No 432
>PLN02678 seryl-tRNA synthetase
Probab=48.39 E-value=92 Score=37.23 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
+++-.+..+..++..++++++.+....-+++..+.... ...+++..+...+.++++.+++++..+++++..+-..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666665555554422111 1223344455566666777777777777766655543
No 433
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.30 E-value=88 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 655 ~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+-.++..|+..+.++-++...|+-||+.||.
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555555555554
No 434
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.12 E-value=2.2e+02 Score=25.95 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~ 642 (1079)
.++.|......|.++++..+.....++....++
T Consensus 40 ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 40 EIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444333333
No 435
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.94 E-value=83 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKIDE 634 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~e 634 (1079)
+++.+..+++..++.+++++++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~ 25 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEE 25 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 436
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.93 E-value=4e+02 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKI 632 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l 632 (1079)
......|..+...++.++..++..+
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443
No 437
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=47.44 E-value=37 Score=38.26 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
..+...+..++..++++...+..+...+.........+...+..+.-.+..++..+..+.-.|..|+..++.++..
T Consensus 80 ~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 80 NSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 3344444444444555555554444444445555555555555666666677777777777888888888888874
No 438
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.37 E-value=1.6e+02 Score=36.05 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 652 QALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 652 ~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
++.++......++.+++++++++..++.++..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444555555555555556555555544
No 439
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=47.14 E-value=2.4e+02 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 651 KQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 651 ~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
.++..++..+..|..-.++|+.++.
T Consensus 73 ~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 73 EQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555555555444
No 440
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.08 E-value=1.1e+02 Score=28.97 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001433 662 QLKTAMHRLEEKVS 675 (1079)
Q Consensus 662 ~l~~e~~~l~~~i~ 675 (1079)
.|+-+...|++.+.
T Consensus 40 ~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 40 ALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333433333
No 441
>PF13166 AAA_13: AAA domain
Probab=46.94 E-value=7.2e+02 Score=31.65 Aligned_cols=15 Identities=0% Similarity=0.242 Sum_probs=9.0
Q ss_pred CCChHHHHHHHHHHh
Q 001433 154 RSTHETFAQKLYQTF 168 (1079)
Q Consensus 154 ~~~d~~~~~kl~~~~ 168 (1079)
+|+-.|-+.++....
T Consensus 25 NGsGKStlsr~l~~~ 39 (712)
T PF13166_consen 25 NGSGKSTLSRILKSL 39 (712)
T ss_pred CCCCHHHHHHHHHHH
Confidence 466666666665554
No 442
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.80 E-value=5.7e+02 Score=30.41 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=4.0
Q ss_pred ccceeeee
Q 001433 352 GKTKVFLR 359 (1079)
Q Consensus 352 G~tkVFlr 359 (1079)
+.+.|++.
T Consensus 41 a~a~l~v~ 48 (444)
T TIGR03017 41 ATTSVVLD 48 (444)
T ss_pred EEEEEEEe
Confidence 45555553
No 443
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.79 E-value=2.1e+02 Score=29.42 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 618 ~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
+...+.-+.+|++.++...++...+.+..+....-.+..++...++..++..++..++.++.++...+
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666666555555544555555555666666666665555555555444
No 444
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.76 E-value=1.3e+02 Score=35.98 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=11.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHHH
Q 001433 883 EAKYPALLFKQQLAAYVEKIYGII 906 (1079)
Q Consensus 883 ~~~~~~~~~~qqL~~~~~~iy~~l 906 (1079)
+.-||+-.|..-.+.+....|..|
T Consensus 569 Eppy~Sp~y~rNfT~~~~~~y~~W 592 (907)
T KOG2264|consen 569 EPPYESPSYARNFTEFQLYSYDFW 592 (907)
T ss_pred CCCCCCchHhhhhhhhhhHHHHHh
Confidence 344444455555555555555554
No 445
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=46.39 E-value=58 Score=40.07 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 471 TRASILIQSHCRKYLARLHYMKLKKAAIT 499 (1079)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~ 499 (1079)
..-|.+||+.||.+.+|+.|.+++..+..
T Consensus 696 d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777776655443
No 446
>COG5570 Uncharacterized small protein [Function unknown]
Probab=46.24 E-value=37 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 001433 660 IVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 660 ~~~l~~e~~~l~~~i~~Le 678 (1079)
+.+|....-.++++|+.|+
T Consensus 35 i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 35 IRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555544
No 447
>PRK00106 hypothetical protein; Provisional
Probab=45.92 E-value=6.6e+02 Score=30.88 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=5.5
Q ss_pred hHHHHHHHhh
Q 001433 1010 LAELELWCCQ 1019 (1079)
Q Consensus 1010 ls~Le~W~~~ 1019 (1079)
|..||+=+.+
T Consensus 460 l~~lE~ia~~ 469 (535)
T PRK00106 460 LRDLEEIANS 469 (535)
T ss_pred HHHHHHHHhc
Confidence 4555555554
No 448
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.65 E-value=1.9e+02 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHhHhHHHHHhhhhccCCCCC
Q 001433 975 IFTQTFSYINVQLFNSLLLRRECCTF 1000 (1079)
Q Consensus 975 ~f~qlf~~ina~lfN~Ll~r~~~cs~ 1000 (1079)
++.|.|-+-|+.++-.+-...+|.-|
T Consensus 270 f~~~~~q~yn~~~l~~~~~~~~~~ew 295 (330)
T PF07851_consen 270 FFGQFFQLYNAYTLFELSYHPECREW 295 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCccchHH
Confidence 46777777788777766555444334
No 449
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.64 E-value=1.6e+02 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 001433 664 KTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 664 ~~e~~~l~~~i~~Le~e~ 681 (1079)
...+.+++.++..+++.+
T Consensus 45 r~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 45 REKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 450
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=45.29 E-value=6.9e+02 Score=30.99 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.0
Q ss_pred hhhhHHHHHHHhhcCC
Q 001433 206 DYVVAEHQALLSASKC 221 (1079)
Q Consensus 206 d~~~~~~~~ll~~S~~ 221 (1079)
|.+..++-.++..+++
T Consensus 52 d~~~~d~~~~~~~~~~ 67 (811)
T KOG4364|consen 52 DGLFDDFREVMDKSKR 67 (811)
T ss_pred chhHHHHHHHhccccc
Confidence 3344444444444443
No 451
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.96 E-value=3.2e+02 Score=29.15 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
..+-....+.-+++.+.+.+.+.+.+.++.+..+.+.+......-.+..+...+.+++.+...++.+++|....+
T Consensus 46 ~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~k 120 (246)
T KOG4657|consen 46 LVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSK 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 452
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=44.59 E-value=3.2e+02 Score=31.46 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 612 EELTSENEKLKTLVSSLEKKIDETEK 637 (1079)
Q Consensus 612 ~~L~~e~~~Le~~l~~l~~~l~ele~ 637 (1079)
.+|..++.+|+.+...+.+++++.-.
T Consensus 147 ~~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 147 EHLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444333
No 453
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.56 E-value=2.2e+02 Score=25.02 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 632 l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
..++..++.+.+.++..+..-+..++.++.++..-.+.|+.+...++..
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444445555555555566666656655555555555555544
No 454
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.08 E-value=2.1e+02 Score=26.39 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 001433 664 KTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 664 ~~e~~~l~~~i~~Le~e~ 681 (1079)
+.++..|..++.+|+-||
T Consensus 75 ~~qi~~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 75 REQINELSGKVMELQYEN 92 (96)
T ss_pred HHHHHHHhhHHHHHhhcc
Confidence 333444444444444333
No 455
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.05 E-value=1.7e+02 Score=29.53 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001433 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1079)
Q Consensus 632 l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq 687 (1079)
...++..+....+....+.+++...+..+....+.+.+|+..+..++.++..+..+
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444434444444444444445555555555555556666666665555543
No 456
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.71 E-value=3e+02 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 659 KIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 659 ~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
++..+++.++.++..+..++.++..++
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 457
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=43.14 E-value=34 Score=33.38 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=52.1
Q ss_pred hhhHHHHHHHhhcCCccccccccccchhccCCC--CCcchHHHHHHHHHHHHHHhcCCCCeeeeecCCCCCC
Q 001433 207 YVVAEHQALLSASKCSFVSSLFLPLAEESSKTS--KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLL 276 (1079)
Q Consensus 207 ~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~--~~~tv~~~f~~~l~~Lm~~l~~t~~hfirCikpN~~~ 276 (1079)
++++++-.++.-+...-++.||...+.....+. -...-.+-|--++..|+..+.-..|--++||-||...
T Consensus 64 plSe~~ral~~f~d~~~lr~lfnr~p~~~~~~~V~v~~Gyl~DFV~s~~rL~ke~~~~~p~~~~YIdPr~~~ 135 (145)
T PF03338_consen 64 PLSEEFRALFEFRDMKELRKLFNRIPINVSDGRVQVNKGYLSDFVISLIRLKKELGFDLPEPTTYIDPRDDI 135 (145)
T ss_pred chhHHHHHHhhccccHHHHHHhccCCCCCCCCceEeccccHHHHHHHHHHHHHhcCCCCCCCceeeCCccch
Confidence 567777778777777777888876654222111 1123467899999999999999999999999999865
No 458
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=43.04 E-value=1.6e+02 Score=37.22 Aligned_cols=32 Identities=6% Similarity=0.021 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.++.++...++.+++++.++-.+|+++++++.
T Consensus 601 ~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 601 TACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555555555554444443
No 459
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=3.2e+02 Score=26.33 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE----------------RLKQALEAESKIVQLKTAMHRLEE 672 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~----------------l~~~l~~~~~~~~~l~~e~~~l~~ 672 (1079)
.+...+...+..++.++...+.+++.+++...+.+-.-++ +..-.+.+++....+++++..++.
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHH
Q 001433 673 KVSDMETENQILRQ 686 (1079)
Q Consensus 673 ~i~~Le~e~~~lrq 686 (1079)
+......++..|+.
T Consensus 103 ~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 103 ELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHH
No 460
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.69 E-value=3.2e+02 Score=26.29 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-------------------------------------- 652 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~-------------------------------------- 652 (1079)
++.+......++++++.+...+.++...+.+.+..++.+..-
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~v 80 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYV 80 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEE
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 653 -------ALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 653 -------l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.+-+++++..+++.++.++..+..+.++...+..
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=42.63 E-value=2.3e+02 Score=24.62 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 620 KLKTLVSSLEKKID-ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 620 ~Le~~l~~l~~~l~-ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
.|+.++...-+.+. +-++...+.+.....+...+.........|...+..|..++..|.+.++.|
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 462
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.59 E-value=1.7e+02 Score=29.59 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSK---ISEERLKQALEAESKIV----QLKTAMHRLE 671 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~---~~~~l~~~l~~~~~~~~----~l~~e~~~l~ 671 (1079)
++........++++++.++.++.+..+.+..+.. ..+++.+++++++.+.. .++.++..+.
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 463
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=42.54 E-value=6.3e+02 Score=29.75 Aligned_cols=217 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 458 GMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQV 537 (1079)
Q Consensus 458 g~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~ 537 (1079)
|.-.++.+....+..++..-|-++|.-.+++-......+.-.. ...+--+.+|+.+...+..-++........-
T Consensus 163 ~~s~~~q~~d~~e~~~~kdSQlkvrlqe~~~ll~~Rve~le~~------Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f 236 (554)
T KOG4677|consen 163 GRSKGEQYRDYSEDWSPKDSQLKVRLQEVRRLLKGRVESLERF------SALRSLQDKLQLAEEAVSMHDENVITAVLIF 236 (554)
T ss_pred ccchhhhHhhHhhhcccchhhHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHH
Q 001433 538 EELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKE--SKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELT 615 (1079)
Q Consensus 538 ~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~--~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~ 615 (1079)
..-.-.++.|.+...+.-.-........++++.+++..++. .....++-..-..+...-+. ..++.-.+.
T Consensus 237 ~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~q--------s~~kstas~ 308 (554)
T KOG4677|consen 237 LKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQ--------SPDKSTASR 308 (554)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccC--------CCCcchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA----ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 616 ~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~----~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
+|..++.-+.+--.+.++.+...+--++.+..+++++..++ +.++..+-.++......+..|+.+.+.+++..
T Consensus 309 ~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~ 385 (554)
T KOG4677|consen 309 KEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHET 385 (554)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHH
No 464
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=42.51 E-value=2.8e+02 Score=34.32 Aligned_cols=163 Identities=7% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001433 893 QQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 972 (1079)
Q Consensus 893 qqL~~~~~~iy~~l~~~l~k~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 972 (1079)
..+..+.......+++.+-..|.|.+.......-. .. ..++.|+..+..++.-++. +++|.+.
T Consensus 360 ~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~--------------~~--~~~~~I~~Ti~dY~~d~~~-~l~~~~~ 422 (566)
T PF06046_consen 360 DGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWY--------------SG--EAVDTICATIEDYLQDFQH-YLRPPYF 422 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGC--------------TS---HHHHHHHHHHHHHHHHCC-CS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCc--------------Cc--chHHHHHHHHHHHHHHHHH-hccccHH
Q ss_pred HHHHHHHHHhHhHHHHHhhhhccCCC-----CCcchhHHhhchHHHHHHHhhcccccccChHhhhhhHHHHHhHHhhccc
Q 001433 973 QKIFTQTFSYINVQLFNSLLLRRECC-----TFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQK 1047 (1079)
Q Consensus 973 ~Q~f~qlf~~ina~lfN~Ll~r~~~c-----s~s~g~qIr~nls~Le~W~~~~~~~~~~~a~~~L~~l~Qa~~lLq~~kk 1047 (1079)
..++..+...+=..=+..||.+|--| .-.-+.+|+-....|.+-+...+ ........+..|...+.+|-+...
T Consensus 423 ~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~--~~~~~~~~~~~l~~l~~ll~~~d~ 500 (566)
T PF06046_consen 423 QELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG--SKSEVKSSFDVLEDLLELLRLEDP 500 (566)
T ss_dssp HHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHH-HS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHhcCCH
Q ss_pred CcCCHH-HHHhCcCCCCCHHHHHHHHhh
Q 001433 1048 YRISYD-EITNDLCPVSQFFLFVTVCVL 1074 (1079)
Q Consensus 1048 ~~~~~~-~i~~~~c~~Ls~~Qi~~il~~ 1074 (1079)
+...++ .......|-++...|..||.+
T Consensus 501 ~~i~l~~~~l~~~ypD~~~~~v~alL~~ 528 (566)
T PF06046_consen 501 EMIKLEVSSLLQKYPDISEEHVEALLAL 528 (566)
T ss_dssp CCHHHHHHHHHCC-TT--SHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh
No 465
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=42.13 E-value=8.4 Score=45.97 Aligned_cols=131 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 510 RRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEV 589 (1079)
Q Consensus 510 Rr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~ 589 (1079)
++..+..++-++|+..|++......++++|.+.+|...+. .-.+-....+.++++=|..|...+.+++.....
T Consensus 365 ~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEq-------qt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmks 437 (495)
T PF12004_consen 365 RESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQ-------QTQKLLLQYQARLEDSEERLRRQQEEKDSQMKS 437 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHH
Q ss_pred HHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 590 AKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1079)
Q Consensus 590 ~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~ 660 (1079)
+..-+ ...-++|.++..++..-++.=+.-+++.++++.-+...+..+...|..+++..
T Consensus 438 II~RL-------------~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 438 IISRL-------------MAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHhhh-------------hhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccCC
No 466
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.08 E-value=3.5e+02 Score=26.68 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 556 EAKTQENAKLQSALQEMQLQF-KESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDE 634 (1079)
Q Consensus 556 ~~~~~e~~~L~~~~~~le~~l-~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~e 634 (1079)
+....+...+...+.+++..+ ..+...+.............+ .............+...+..++.....
T Consensus 4 ~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l----------~~~~~~~~~~~~~~~~~~~~l~~~~~k 73 (136)
T PF04871_consen 4 KSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKEL----------KEAEQAAEAELEELASEVKELEAEKEK 73 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 635 TEKKF-EETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1079)
Q Consensus 635 le~~~-~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l 670 (1079)
+..+. ..++.+...+.--+.+...++..+...++.|
T Consensus 74 l~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 74 LKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 467
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.06 E-value=1.4e+02 Score=25.80 Aligned_cols=51 Identities=14% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1079)
Q Consensus 625 l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~ 675 (1079)
+.+.++++.+.+.++.+.++....++......+..+..+...++++++...
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=41.92 E-value=2.6e+02 Score=25.14 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~ 679 (1079)
+..+.+..++++..++.+++++..+.++..++-....++...+....+++..+-+.++++-+.+.++..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 469
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=41.43 E-value=55 Score=36.95 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHH
Q 001433 536 QVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELT 615 (1079)
Q Consensus 536 k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~ 615 (1079)
.+..+..||. +.+.-++.|...+..+...+..++..+..-.........++..+ ...+..+.
T Consensus 29 DLs~I~eRLs-----------aLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sL-------sstV~~lq 90 (326)
T PF04582_consen 29 DLSPIRERLS-----------ALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSL-------SSTVTSLQ 90 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001433 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 616 ~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le 678 (1079)
..+..+...+.++...+.+.+..+..+......+...+..++..+....-.+.+|+.++..||
T Consensus 91 ~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 91 SSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
No 470
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.33 E-value=1.5e+02 Score=29.50 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 615 ~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
.++-+.++.-.++...+..++.+++-....++..+...-...++++..+.+|+.+|+.++.++..+.+..
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.28 E-value=7.7e+02 Score=30.36 Aligned_cols=193 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001433 485 LARLHYMKLKKAAITTQCAWRGKVARRELRKLKM-----------AARETGALQAAKNKLEKQVEELTWRLQLEK----- 548 (1079)
Q Consensus 485 ~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~~-----------~a~~~~~L~~~~~~LE~k~~el~~rl~~E~----- 548 (1079)
.....|+..++....+|...|....|.++-+... +.+++...++.....++-....+.-.+.-.
T Consensus 161 ~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~ 240 (557)
T COG0497 161 EAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDT 240 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCc
Q ss_pred -HHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHH
Q 001433 549 -RMRVDMEEAKT--QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLV 625 (1079)
Q Consensus 549 -~~~~~le~~~~--~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l 625 (1079)
.....+-.... ....+.-..+.++...++++--++.+...+++...+++..-.+....-++++..|..-..|....+
T Consensus 241 ~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~ 320 (557)
T COG0497 241 VSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTI 320 (557)
T ss_pred hhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001433 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1079)
Q Consensus 626 ~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~ 688 (1079)
+++-+-.+++..++..+. ........|+.+++.++.++...=.++...|+++
T Consensus 321 ~~l~~~~~~~~~el~~L~-----------~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 321 EDLLEYLDKIKEELAQLD-----------NSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHHHHHHHHHhh-----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=41.24 E-value=1.1e+02 Score=34.02 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001433 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 611 ~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
...|..|+..|-=+++-|+..|.+.+..+++..++++++.++++-....+.-|+-...++++.|..-++=++.
T Consensus 135 naQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 135 NAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.21 E-value=6.5e+02 Score=29.47 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-h
Q 001433 529 AKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI-D 607 (1079)
Q Consensus 529 ~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~-~ 607 (1079)
++..-.+.+.+|.+.++ +....+..++++++.+++++++.....-+...+...+......... +
T Consensus 236 Qnk~akehv~km~kdle---------------~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elre 300 (575)
T KOG4403|consen 236 QNKKAKEHVNKMMKDLE---------------GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELRE 300 (575)
T ss_pred hhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKID------------------------ETEKKFEETSKISEERLKQALEAESKI--- 660 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~------------------------ele~~~~e~~~~~~~l~~~l~~~~~~~--- 660 (1079)
...++...+|+..+...+...+++++ -.+++....++.........+.++++.
T Consensus 301 g~e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 301 GVENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcch
Q ss_pred ------------HHHHHHHHHHHHHHHhHHHHHHH
Q 001433 661 ------------VQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 661 ------------~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
++....+-+++..+.++-..+.+
T Consensus 381 ~gtl~vahgsslDdVD~kIleak~al~evtt~lrE 415 (575)
T KOG4403|consen 381 FGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRE 415 (575)
T ss_pred heeeeeccccchhhHHHHHHHHHHHHHHHHHHHHH
No 474
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=41.02 E-value=5.7e+02 Score=28.75 Aligned_cols=124 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001433 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVP 598 (1079)
Q Consensus 519 ~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~ 598 (1079)
+..-.......+..+++.+..+...|. .+..++...+.+.+..+.+...+....
T Consensus 174 a~evL~~fl~~~~~~~~~ilq~d~~L~-----------~~ek~~~~~~~k~e~~e~e~~~l~e~~--------------- 227 (297)
T PF02841_consen 174 AEEVLQEFLQSKESMENSILQADQQLT-----------EKEKEIEEEQAKAEAAEKEKEKLEEKQ--------------- 227 (297)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-TTS------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001433 599 VVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1079)
Q Consensus 599 ~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le 678 (1079)
......++.+...+++.+..|.+++++......+ +.+..-....-+..+-.....+.+...++.+|..|+
T Consensus 228 ---------~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~-e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 228 ---------KEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQ-EQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 475
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=41.01 E-value=83 Score=28.58 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 640 ~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
...++++..+..++-+++.++..|-..+...+++.-+|+.||..|-|
T Consensus 52 ~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 52 NDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
No 476
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.71 E-value=7.1e+02 Score=29.82 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 505 RGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1079)
Q Consensus 505 R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~ 584 (1079)
+...+..+...+...-.+...+.-...++--+.+++..-...++.....--+....++..+.+.+.-.+......-.++-
T Consensus 149 ~m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~~s~~e~l~kl~ 228 (613)
T KOG0992|consen 149 LMRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVEESRLESLGKLN 228 (613)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHhhcccccccccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 585 KEIEVAKKEAEKVPVVQEVPVI-----------DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA 653 (1079)
Q Consensus 585 ~e~~~~~~~~ee~~~~~e~~~~-----------~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l 653 (1079)
.+ .+.+.+..+...+.+.... ....+..++++...|++.... +..+-.+...++.....+.....
T Consensus 229 ~E-qQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~---e~~e~rk~v~k~~~l~q~~~~~~ 304 (613)
T KOG0992|consen 229 SE-QQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE---ETTEKRKAVKKRDDLIQSRKQVS 304 (613)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001433 654 LEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1079)
Q Consensus 654 ~~~~~~~~~l~~e~~~l~~~i~~Le~e~ 681 (1079)
.+++ +.....+...+.-.-|.+|..|+
T Consensus 305 ~eL~-K~kde~~~n~~~~~lie~lq~el 331 (613)
T KOG0992|consen 305 FELE-KAKDEIKQNDDKVKLIEELQDEL 331 (613)
T ss_pred HHHH-HHHHHHhccchHHHHHHHHHHHH
No 477
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.56 E-value=3.5e+02 Score=26.25 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 580 (1079)
Q Consensus 503 ~~R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~ 580 (1079)
.+|-..-|+-++..--++.=..+-..++.+||++..+|.+.++ ....|++.+..++..++...+.+.
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~-----------~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE-----------KLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=40.51 E-value=3e+02 Score=31.73 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS-EERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~-~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
...+.+|..++.+|+.+...+.+++++.-....+.+..+ .+-..-|.+-..+++.|++.+..++..-.....+
T Consensus 143 ~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~~~ 216 (342)
T PF06632_consen 143 QAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPKQE 216 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchhhh
No 479
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=40.04 E-value=4.4e+02 Score=27.23 Aligned_cols=171 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 513 LRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKK 592 (1079)
Q Consensus 513 ~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e~~~~~~ 592 (1079)
+..|+.--..+.+|.-.+..-|..+..|......-+..-.............+.....++..++..++.+..--..+..-
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLey 82 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 593 EAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1079)
Q Consensus 593 ~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~ 672 (1079)
...-+...+-....-.++-..+..+...-...+..=.++++-+|++..++...-.-...++..++.++..=+-+-+-+++
T Consensus 83 MRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQd 162 (178)
T PF14073_consen 83 MRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQD 162 (178)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHH
Q 001433 673 KVSDMETENQI 683 (1079)
Q Consensus 673 ~i~~Le~e~~~ 683 (1079)
+-..|+..++.
T Consensus 163 kAaqLQt~lE~ 173 (178)
T PF14073_consen 163 KAAQLQTGLET 173 (178)
T ss_pred HHHHHHhhHHH
No 480
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=39.91 E-value=6e+02 Score=31.95 Aligned_cols=194 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCcccccccccCCccccccCCCC
Q 001433 635 TEKKFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGH 713 (1079)
Q Consensus 635 le~~~~e~~~~~~~l~~~l~~~~~~~-~~l~~e~~~l~~~i~~Le~e~~~lrqq~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1079)
+.+++..++.++++-.+.+.+..... ...+++++.|+..+++||+|.+-|..+..+.+..................+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~r~~~~~~~~~~~~~~~~ 81 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKRRKNVSSPSGTNSTSNST 81 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccccc
Q ss_pred CcccccCCCCCCCCCCcccCCCcch--hHhhhhhHHhh-hhcHHHHHHHc----------------------------cc
Q 001433 714 HVIEENISNEPQSATPVKKLGTESD--SKLRRSHIEHQ-HENVDALINCV----------------------------AK 762 (1079)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~e~~-~e~~~~l~~~i----------------------------~~ 762 (1079)
...........+...+...+....+ ..+..+-..+. +.+-..++++| ..
T Consensus 82 ~~~~~~~~~~~~~~~s~~~k~~~~ep~~~~~~l~~~r~v~detSlf~D~l~~h~I~Gs~~ttie~LnkI~ld~~~~~~~~ 161 (654)
T PF09798_consen 82 STPESSSAANTSEESSPKSKKREIEPKKPYVPLNPNRIVPDETSLFFDHLWNHKINGSKRTTIEILNKICLDYIDDFQFK 161 (654)
T ss_pred cCCCcccccccccccchhhcccccCccccccccCcceecCCcHHHHHHHHHHhhcccccccHHHHHhhhhhccchhcccc
Q ss_pred cCCCcCCCCchHHHHHHHHhhhcchhhhh--hHHHHHHHHHHHH-hhhccCCCcccchhhhhHHHHHHH
Q 001433 763 NLGYCNGKPVAAFTIYKCLLHWKSFEAER--TSVFDRLIQMIGS-AIENEDDNDHMAYWLSNTSTLLFL 828 (1079)
Q Consensus 763 ~~~~~~~~P~~A~il~~c~r~~~~~~~e~--~~ll~~i~~~I~~-~i~~~~d~~~l~fWLSN~~~Ll~~ 828 (1079)
+.....+.|..--|.-+.++.=....-+. ..++..++..|++ .+-+.+..-.+.|=+|=.+.-+.|
T Consensus 162 ~~~i~k~~~ig~~I~~~Lm~~kk~~rLD~lId~~le~la~LIk~i~~~~ke~~laVPFLvsLm~~si~F 230 (654)
T PF09798_consen 162 NFKISKREPIGKSIVELLMRSKKNMRLDKLIDTLLENLADLIKEIILHEKESKLAVPFLVSLMHQSISF 230 (654)
T ss_pred ceeeccCCcccHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHhhcccccceehHHHHHHHHHheec
No 481
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=39.90 E-value=5.9e+02 Score=29.06 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 565 LQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1079)
Q Consensus 565 L~~~~~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~ 644 (1079)
+...++.+....++++..+ .+-......++...+.++.+.|+.-..... +...+..
T Consensus 5 ~~~kl~~~~~r~~el~~~L----------------~~p~v~~d~~~~~~lske~a~l~~iv~~~~--------~~~~~~~ 60 (363)
T COG0216 5 LLEKLESLLERYEELEALL----------------SDPEVISDPDEYRKLSKEYAELEPIVEKYR--------EYKKAQE 60 (363)
T ss_pred HHHHHHHHHHHHHHHHHHh----------------cCcccccCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 645 ISEERLKQALE--AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 645 ~~~~l~~~l~~--~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
...+....+.+ ..+-..-.+.++.+++.++..|+++++.|
T Consensus 61 ~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 61 DLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=1.3e+02 Score=32.40 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHH
Q 001433 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTA-MHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 618 ~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e-~~~l~~~i~~Le~e~~~lrq 686 (1079)
+.+|++++..|++.|.+-.+.+-+.++.+.+|... ++-+..+++.-++ +..|..+++++-.++..|+.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.74 E-value=1.2e+02 Score=31.69 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 561 ENAKLQSALQEMQLQFKESKEKLMK-------EIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID 633 (1079)
Q Consensus 561 e~~~L~~~~~~le~~l~~~~~~l~~-------e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ 633 (1079)
|...|+.++.+|+..+.+++..... ...-++...+++...+ +.++..++.-...-...+...++.++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK------~~ql~~~~~~~~~~~~~l~~v~~Dl~ 170 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYK------ERQLRELEEGRSKSGKNLKSVREDLD 170 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHH------HHHHHhhhccCCCCCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 634 ETEKKFEETSKISEERLKQALEAE 657 (1079)
Q Consensus 634 ele~~~~e~~~~~~~l~~~l~~~~ 657 (1079)
..+.+..-++.-+......|++++
T Consensus 171 ~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 171 TIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
No 484
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.70 E-value=2.7e+02 Score=24.73 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001433 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1079)
Q Consensus 608 ~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~ 683 (1079)
.+-++.+..|...+-.++...+..-++.+.++..-..+.......+-+++..-.++.... +++|.+|..+++.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
No 485
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.68 E-value=7.9e+02 Score=30.07 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 503 AWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1079)
Q Consensus 503 ~~R~~~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~ 582 (1079)
.+....+++........++.-..-......++.+-...+.+++ .++..........++....+.++...+..+..-++.
T Consensus 13 ~ig~~~ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~E-aeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~ 91 (514)
T TIGR03319 13 IIGYLLRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLE-AKEEVHKLRAELERELKERRNELQRLERRLLQREET 91 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001433 583 LMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA------ 656 (1079)
Q Consensus 583 l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~------ 656 (1079)
+ ..+...|.+....|+..-.++.+...++++...+......+...+|+..
T Consensus 92 L------------------------ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 92 L------------------------DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred H------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 657 ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 657 ~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
+.+-.-++.-..+++.+...+-.+.+..
T Consensus 148 eak~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T TIGR03319 148 EAKEILLEEVEEEARHEAAKLIKEIEEE 175 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.65 E-value=5.5e+02 Score=28.24 Aligned_cols=179 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---
Q 001433 508 VARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKE--- 581 (1079)
Q Consensus 508 ~aRr~~~~l~~~a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~---~e~~~L~~~~~~le~~l~~~~~--- 581 (1079)
..+............+..+......|+..+..|..+.....+.-..+...-. .....|...+..+...+..+..
T Consensus 32 ~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 32 QLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHHHhhc--ccccccccchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 001433 582 ------------KLMKEIEVAKKEAEKV--PVVQEVPVIDHAVVEELTSENEKLKTLV-----------SSLEKKIDETE 636 (1079)
Q Consensus 582 ------------~l~~e~~~~~~~~ee~--~~~~e~~~~~~~~~~~L~~e~~~Le~~l-----------~~l~~~l~ele 636 (1079)
.+....+++....+++ ..........+.+..+...-....+..+ ..+...+.+..
T Consensus 112 ~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~ 191 (264)
T PF06008_consen 112 SLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYN 191 (264)
T ss_pred HhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 637 ~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
.++.++.....+......+++.....-+..+.+++.+..+++++......
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=39.52 E-value=4.5e+02 Score=30.87 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccccc
Q 001433 528 AAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES-KEKLMKEIEVAKKEAEKVPVVQEVPVI 606 (1079)
Q Consensus 528 ~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~-~~~l~~e~~~~~~~~ee~~~~~e~~~~ 606 (1079)
.....||+++..|+..+.........+..... ...+...+..|+.++.-+ ...+..-...++.+..++..+.+....
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~--~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~ 286 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTS--SSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKE 286 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred ------hHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 607 ------DHAVVEELTSENEKLK--------------------TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1079)
Q Consensus 607 ------~~~~~~~L~~e~~~Le--------------------~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~ 660 (1079)
.+.++++|=....+++ .+..+.-..+..++....++.........-|...+.+
T Consensus 287 ~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~- 365 (388)
T PF04912_consen 287 AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK- 365 (388)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 661 ~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
+.+.++.++..+..|++.+..|+
T Consensus 366 --~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 366 --FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccC
No 488
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=39.50 E-value=1.3e+02 Score=38.00 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001433 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK-------ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1079)
Q Consensus 610 ~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~-------~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e 680 (1079)
....+.++.++++.+++.+++++.+++.++..... ...++..++++++..+..+..+-.+|.+++++++.|
T Consensus 557 ~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~~~ 634 (638)
T PRK10636 557 QTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLLE 634 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 489
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.41 E-value=1.1e+02 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001433 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1079)
Q Consensus 638 ~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~L 677 (1079)
++.+++.+...+...+...++++.++.++++.+++.+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.41 E-value=1.8e+02 Score=32.85 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 614 L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.++-..+.+++++.+....+++....+++.....++....+.++.+...+++.++-|...+++-.+..+.++
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
No 491
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=39.35 E-value=1.8e+02 Score=25.10 Aligned_cols=51 Identities=6% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 632 IDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 632 l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
+.+.++++.+.+........++..++.....++..++.+..++.++++.+.
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.97 E-value=60 Score=41.11 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 001433 471 TRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAA 520 (1079)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~~~a 520 (1079)
+..+..+-+..-....|..-++..++++.+|+.|||+.+|+..+.+-.++
T Consensus 6 ~er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~ 55 (1001)
T KOG0942|consen 6 NERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREE 55 (1001)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=38.64 E-value=2.6e+02 Score=24.23 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001433 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1079)
Q Consensus 618 ~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~L 677 (1079)
...++.--.+..++..+-+....++.........+...+...+..|...+..|.+.+++|
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=38.42 E-value=3.1e+02 Score=24.96 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001433 613 ELTSENEKLKTLVSSLEKKID----------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~----------ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~ 682 (1079)
.+..-...|+..++.|+..+. +++.++..+......+.++|...+.....|+.-..+...++...-+.+.
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.21 E-value=2.2e+02 Score=28.75 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001433 623 TLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1079)
Q Consensus 623 ~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~l 684 (1079)
..+-.+-..+.........+..+...+..++..++.++..|++++..|+.++...+++-..|
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.15 E-value=3e+02 Score=30.48 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccC
Q 001433 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLST 692 (1079)
Q Consensus 613 ~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrqq~~~~~ 692 (1079)
.++..+..|.++..++.+.+..+.....++.+.....+. ++-..+..+...+..+...+++++.|+...++..++.+
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~ 195 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMS 195 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
No 497
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.91 E-value=2.5e+02 Score=25.08 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK 659 (1079)
Q Consensus 607 ~~~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~~~~l~~~l~~~~~~ 659 (1079)
+.+..+.|..+...|+..+++|-.++++.+.+..+++.+..-|..-+..+...
T Consensus 14 ~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 14 EKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.83 E-value=2e+02 Score=34.18 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001433 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI----SEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1079)
Q Consensus 609 ~~~~~L~~e~~~Le~~l~~l~~~l~ele~~~~e~~~~----~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~L 677 (1079)
+.+..+..+..++..++++++.+....-+++....+. ..++..+..++.+++..+++++..+++++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.58 E-value=6.5e+02 Score=28.44 Aligned_cols=124 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001433 553 DMEEAKTQENAKLQSALQEMQLQFKES-KEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKK 631 (1079)
Q Consensus 553 ~le~~~~~e~~~L~~~~~~le~~l~~~-~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~ 631 (1079)
+-.+..+++.-.+...++++...+.++ ..++.....+...-+.+. ...++++.++++.|+..+......
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q----------~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQ----------KRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001433 632 ID------------------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1079)
Q Consensus 632 l~------------------ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lrq 686 (1079)
+. +..+++.++..++.....++...+.+....+..+..+.++.-.+-........
T Consensus 111 ~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~ 183 (301)
T PF06120_consen 111 LAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQA 183 (301)
T ss_pred HhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=37.57 E-value=9.3e+02 Score=30.25 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH---------
Q 001433 449 AVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMA--------- 519 (1079)
Q Consensus 449 ~~~iQ~~~Rg~~aR~~~~~~~~~~aa~~IQ~~~R~~~~r~~~~~~~~a~v~iQ~~~R~~~aRr~~~~l~~~--------- 519 (1079)
+..+-.-.|+...--.-..++-..-|.-+.+..+.-.+-+.-..-.+++..==-.+|..+.-...+.|...
T Consensus 75 ~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~ 154 (739)
T PF07111_consen 75 LRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLS 154 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001433 520 ------ARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKE---IEVA 590 (1079)
Q Consensus 520 ------a~~~~~L~~~~~~LE~k~~el~~rl~~E~~~~~~le~~~~~e~~~L~~~~~~le~~l~~~~~~l~~e---~~~~ 590 (1079)
.+++..|.....+|++.+.+++.+.. ....+....+.+.+.|+.++.+..++++.. .+..
T Consensus 155 ~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~-----------~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~L 223 (739)
T PF07111_consen 155 SLTQAHQEALASLTSKAEELEKSLESLETRRA-----------GEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQL 223 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q 001433 591 KKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID------------------------------------- 633 (1079)
Q Consensus 591 ~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~Le~~l~~l~~~l~------------------------------------- 633 (1079)
++-..+..--.-....+.....+|.....+|+++=+.|...++
T Consensus 224 R~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K 303 (739)
T PF07111_consen 224 RKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRK 303 (739)
T ss_pred HHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHH
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001433 634 -----------------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1079)
Q Consensus 634 -----------------ele~~~~e~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~i~~Le~e~~~lr 685 (1079)
.++.+--+......++..++..++..+...+.+..-|...+.+...+++..+
T Consensus 304 ~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevER 372 (739)
T PF07111_consen 304 CQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVER 372 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Done!