Query 001434
Match_columns 1078
No_of_seqs 846 out of 6880
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 16:14:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001434.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_736-740//hhsearch_pdb/001434hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 816.6 36.9 686 53-750 6-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 659.8 27.9 595 118-719 92-744 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 546.8 36.9 593 109-721 11-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 541.4 34.4 323 103-425 26-364 (680)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 492.1 32.3 531 117-720 26-564 (606)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 489.5 32.0 501 91-643 14-536 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 487.0 20.8 318 58-403 29-390 (636)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 485.8 27.6 82 55-143 265-365 (876)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 480.1 34.7 533 109-696 11-564 (844)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 477.7 38.7 535 129-720 7-564 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=816.62 Aligned_cols=686 Identities=33% Similarity=0.522 Sum_probs=639.3
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCC---CCCCCCCCCCCC
Q ss_conf 15797216999999997344588787796689999985451693159999689970799865666---788645777438
Q 001434 53 TTEGLNSEGHYLLELKNSLHDEFNFLKSWKSTDQTPCSWIGVNCTSDFEPVVWSLDLNAMNFTGS---LSPSIGGLVHLT 129 (1078)
Q Consensus 53 ~~~~~~~~~~~ll~~k~~~~~~~~~l~sW~~~~~~~C~W~gv~C~~~~~~~v~~l~l~~~~l~g~---~~~~l~~l~~L~ 129 (1078)
++.+.++|++||++||+++.|+. .+++|+.. .+||.|.||+|+ .++|+.++|++.++.|. +++++.++++|+
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~---~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCR---DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEE---TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCC-CCCCCCCCEEEC---CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 56687899999999996678962-14687899-987688413878---99278987789986775576696573168022
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCHHHHHCC
Q ss_conf 685336743331397765767795778458742353332--12667888130113543457788514-498645677401
Q 001434 130 YLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKIPA--ELGKLSSLVSLNICNNMISGALPEGL-GNLSSLVDFVAY 206 (1078)
Q Consensus 130 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~L~~L~l~ 206 (1078)
.++++.+.+. .+|..|+.+++|++|+|++|.++|.+|. .++.+++|++|++++|.+++.+|..+ .++++|+.|+++
T Consensus 81 ~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 81 SLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp EEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred CCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 4678688867-870332457889989898985787078967872788999898968826774797785638899989897
Q ss_pred CCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 67432435655---567665458983786433456977556665541551034668888875675445546650478566
Q 001434 207 TNNLTGPLPQS---IGNLRNLRVFRAGQNAISGSIPAEISGCQSLQILGLAQNDIGGSLPKEIGMLESLTEIVLWDNQLT 283 (1078)
Q Consensus 207 ~n~l~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 283 (1078)
+|.+.+..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++.+++|++|++++|.++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCC
T ss_conf 9835885871556643589889898978803465784--5478689898928827887711-126999998979488587
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHH
Q ss_conf 7787555675645434301333334434212232234301123788888547555676-654578426987877521233
Q 001434 284 GFIPSELGNCTKLQTLALYSNNLVGQIPKEVGNLKFLTKLYLYRNELNGTIPREIGNL-SMVTEIDLSENSLNGEIPTEF 362 (1078)
Q Consensus 284 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~ 362 (1078)
+.+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..|
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHH
T ss_conf 816577744888898989888665716724--368789897917855772588888446868899896896778423677
Q ss_pred HHHCCCCHHCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEEECCCCCCCCCCCCCC--CC
Q ss_conf 32015330102355256788986-42246567165447424589885542334-4554673045234689985423--68
Q 001434 363 SKITGLRLLFLFQNQLTGVIPNE-LSSLRNLTKLDLSINYLTGPIPVGFQHLT-QMRQLQLFENSLTGGIPPGLGL--YS 438 (1078)
Q Consensus 363 ~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~--~~ 438 (1078)
+.+++|+.|++++|++.+.+|.. +..+++|+.|++++|.+.+..|..+..++ +|+.|++++|.+.+..+..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 55877667789788525737978872488887884847843762309898632277199862787478767666533247
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 51099903887889989111178766506422100245578687562346249963677668665100034433300023
Q 001434 439 LLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYNKLFGNIPTDVLNCETLLQLRLVGNSLTGSFPLELCKLENLYAIELD 518 (1078)
Q Consensus 439 ~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 518 (1078)
.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEEC
T ss_conf 76189897784654248777568987989895884668546777449988989897881547189788287773299901
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 34336999522233233304330245324688766577555618971166446868833224444647751376335888
Q 001434 519 QNKFSGPIPPEIENCQKLQRLHIANNYFTSELPKEVGNLSQLVTFNISSNMLTGLIPPEIVNCMTLQRLDISHNSFVGSL 598 (1078)
Q Consensus 519 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 598 (1078)
+|++.+.+|..+.++++|+.|++++|++++.+|.+++.+++|++|+|++|++.+.+|..+..+++|+.|++++|.+++.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 99513758878816998998975399518968768856899998989789433748877708898998989888468827
Q ss_pred CCCCCCCCC----------------------------------------------CCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 720257334----------------------------------------------8553336654578778866776521
Q 001434 599 PNELGTLQQ----------------------------------------------LEILKLSENKFSGNIPSTLGNLSHL 632 (1078)
Q Consensus 599 p~~~~~l~~----------------------------------------------L~~L~Ls~N~l~~~~p~~~~~l~~L 632 (1078)
|..+..... +..++++.|.++|.+|..++.+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred CHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCC
T ss_conf 95786042122320134542111134443222233222100135563232002321100113310046274334033566
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 07732576487889700168034899972012223598885558410010111589957578773565310145101334
Q 001434 633 TELQMGGNLFSGEIPPELGDLSSLQIALNLSYNNLSGSIPPELGKLDLLEFLLLNNNHLSGEIPSAFENLSSLLGSNFSY 712 (1078)
Q Consensus 633 ~~L~Ls~N~l~g~ip~~~~~l~~l~~~l~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~ 712 (1078)
+.|||++|.++|.+|.+++.++.|+ .|+|++|+++|.+|.+++.+++|+.|||++|+++|.+|..+.++++|+.+++|+
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCC-EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 5797858801555877884141578-784868803887896784777899898978802386886775788789787968
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53579999986467655553346767679888877899
Q 001434 713 NNLTGPLPSIPQFQNMDISSFLGNEGLCGRPVGNCGAS 750 (1078)
Q Consensus 713 N~l~g~~p~~~~~~~~~~~~~~~n~~lcg~p~~~c~~s 750 (1078)
|+|+|.+|..++|.+++..+|.+|+++||.|...|...
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCC
T ss_conf 81556089960102489777569832108877678887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=659.82 Aligned_cols=595 Identities=33% Similarity=0.490 Sum_probs=543.8
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCC-
Q ss_conf 788645777438685336743331397--76576779577845874235333212-66788813011354345778851-
Q 001434 118 LSPSIGGLVHLTYLDLAYNELTGYIPR--EIGNCSRLEHLYLNNNQFSGKIPAEL-GKLSSLVSLNICNNMISGALPEG- 193 (1078)
Q Consensus 118 ~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~L~~n~~~~~~p~~- 193 (1078)
+++.++.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+.+|..+ .++++|++|++++|.+++..|..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 70332457889989898985787078967872788999898968826774797785638899989897983588587155
Q ss_pred --CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf --449864567740167432435655567665458983786433456977556665541551034668888875675445
Q 001434 194 --LGNLSSLVDFVAYTNNLTGPLPQSIGNLRNLRVFRAGQNAISGSIPAEISGCQSLQILGLAQNDIGGSLPKEIGMLES 271 (1078)
Q Consensus 194 --l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 271 (1078)
+.++++|+.|++++|.+.+.++. ..+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..++.+++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 6643589889898978803465784--5478689898928827887711-126999998979488587816577744888
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 5466504785667787555675645434301333334434212232-234301123788888547555676654578426
Q 001434 272 LTEIVLWDNQLTGFIPSELGNCTKLQTLALYSNNLVGQIPKEVGNL-KFLTKLYLYRNELNGTIPREIGNLSMVTEIDLS 350 (1078)
Q Consensus 272 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 350 (1078)
|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|..++.. ++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 898989888665716724--368789897917855772588888446868899896896778423677558776677897
Q ss_pred CCCCCCCCCHH-HHHHCCCCHHCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEEECCCC
Q ss_conf 98787752123-33201533010235525678898642246-5671654474245898855423--34455467304523
Q 001434 351 ENSLNGEIPTE-FSKITGLRLLFLFQNQLTGVIPNELSSLR-NLTKLDLSINYLTGPIPVGFQH--LTQMRQLQLFENSL 426 (1078)
Q Consensus 351 ~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~l~~N~l 426 (1078)
+|.+.+.+|.. +..+++|+.|++++|++.+.+|..+..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 88525737978872488887884847843762309898632277199862787478767666533247761898977846
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 46899854236851099903887889989111178766506422100245578687562346249963677668665100
Q 001434 427 TGGIPPGLGLYSLLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYNKLFGNIPTDVLNCETLLQLRLVGNSLTGSFPLEL 506 (1078)
Q Consensus 427 ~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~~~~l 506 (1078)
++.+|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+..|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHH
T ss_conf 54248777568987989895884668546777449988989897881547189788287773299901995137588788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC--
Q ss_conf 034433300023343369995222332333043302453246887665775556189711664468688332244446--
Q 001434 507 CKLENLYAIELDQNKFSGPIPPEIENCQKLQRLHIANNYFTSELPKEVGNLSQLVTFNISSNMLTGLIPPEIVNCMTL-- 584 (1078)
Q Consensus 507 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-- 584 (1078)
..+++|+.|++++|++.+.+|.++..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+.....+
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHH
T ss_conf 16998998975399518968768856899998989789433748877708898998989888468827957860421223
Q ss_pred --------------------------------------------CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf --------------------------------------------477513763358887202573348553336654578
Q 001434 585 --------------------------------------------QRLDISHNSFVGSLPNELGTLQQLEILKLSENKFSG 620 (1078)
Q Consensus 585 --------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 620 (1078)
+.++++.|.+.+.+|..+..+++|+.|+|++|+++|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 20134542111134443222233222100135563232002321100113310046274334033566579785880155
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHH
Q ss_conf 77886677652107732576487889700168034899972012223598885558410010111589957578773565
Q 001434 621 NIPSTLGNLSHLTELQMGGNLFSGEIPPELGDLSSLQIALNLSYNNLSGSIPPELGKLDLLEFLLLNNNHLSGEIPSAFE 700 (1078)
Q Consensus 621 ~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~l~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 700 (1078)
.+|..++.++.|+.|+|++|.++|.+|..++.++.|+ .|+|++|+++|.+|..++.++.|+.||+++|+++|.||.. .
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~ 724 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-G 724 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-S
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-H
T ss_conf 5877884141578784868803887896784777899-8989788023868867757887897879688155608996-0
Q ss_pred HHCCCCCCCCCCCC-CCCCC
Q ss_conf 31014510133453-57999
Q 001434 701 NLSSLLGSNFSYNN-LTGPL 719 (1078)
Q Consensus 701 ~l~~L~~l~ls~N~-l~g~~ 719 (1078)
.+..+....+.+|+ |+|.+
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTT
T ss_pred HHCCCCHHHHCCCCHHCCCC
T ss_conf 10248977756983210887
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=546.76 Aligned_cols=593 Identities=21% Similarity=0.223 Sum_probs=432.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 79986566678864577743868533674333139776576779577845874235333212667888130113543457
Q 001434 109 LNAMNFTGSLSPSIGGLVHLTYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKIPAELGKLSSLVSLNICNNMISG 188 (1078)
Q Consensus 109 l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 188 (1078)
.++.+++ .+|..+. +++++|+|++|.+++..+..|+++++|++|+|++|.+++..|..++++++|++|++++|.+++
T Consensus 11 cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 11 CSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp CCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred CCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 7779805-2641248--887688898997787597887178767588788996485697787406676888899985675
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-
Q ss_conf 7885144986456774016743243565556766545898378643345697755666554155103466888887567-
Q 001434 189 ALPEGLGNLSSLVDFVAYTNNLTGPLPQSIGNLRNLRVFRAGQNAISGSIPAEISGCQSLQILGLAQNDIGGSLPKEIG- 267 (1078)
Q Consensus 189 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~- 267 (1078)
..+..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 68545303888898989899668539667415678888989899524667211124556777974588436529788624
Q ss_pred -CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -544554665047856677875556756454343013333344342122---3223430112378888854755567665
Q 001434 268 -MLESLTEIVLWDNQLTGFIPSELGNCTKLQTLALYSNNLVGQIPKEVG---NLKFLTKLYLYRNELNGTIPREIGNLSM 343 (1078)
Q Consensus 268 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 343 (1078)
.+++|++|++++|.+++..|..+..+++|+.|++.++.+.......+. ..++|+.|++++|.+.+..+..+..++.
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 46663217988898256558155532234455430566468056777877753151008874577436468667514676
Q ss_pred --CCEEECCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf --457842698787752123332015330102355256788986422465671654474245898855423344554673
Q 001434 344 --VTEIDLSENSLNGEIPTEFSKITGLRLLFLFQNQLTGVIPNELSSLRNLTKLDLSINYLTGPIPVGFQHLTQMRQLQL 421 (1078)
Q Consensus 344 --L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 421 (1078)
|+.|++++|.+.+..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|...+.++. ..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~--------- 316 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--AS--------- 316 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----------------
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC--CC---------
T ss_conf 7788877878876756802116741056855778856765865626788855773633132133333--55---------
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-C-CCCCCC--CCCCCEEEEECCC
Q ss_conf 04523468998542368510999038878899891111787665064221002455-7-868756--2346249963677
Q 001434 422 FENSLTGGIPPGLGLYSLLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYNKLFGN-I-PTDVLN--CETLLQLRLVGNS 497 (1078)
Q Consensus 422 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~-~-p~~~~~--~~~L~~L~L~~N~ 497 (1078)
+.......+..++.|+.|++++|.+++..+..|..+++|+.|++++|.+... + ...+.. ..+|+.|++++|+
T Consensus 317 ----lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 317 ----LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp ----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred ----CCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCC
T ss_conf ----4543865624677788887989826878855740656872898879801443235322024556867668899997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCC
Q ss_conf 668665100034433300023343369995-22233233304330245324688766577555618971166446--868
Q 001434 498 LTGSFPLELCKLENLYAIELDQNKFSGPIP-PEIENCQKLQRLHIANNYFTSELPKEVGNLSQLVTFNISSNMLT--GLI 574 (1078)
Q Consensus 498 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~ 574 (1078)
+.+..+..+..+++|+.|++++|.+.+.+| ..+.++++|++|++++|.+++..+..|..+++|+.|++++|.+. +..
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCC
T ss_conf 77677544207788888867787575435755325754612784489975422764550075431011014644225667
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 8332244446477513763358887202573348553336654578778--------86677652107732576487889
Q 001434 575 PPEIVNCMTLQRLDISHNSFVGSLPNELGTLQQLEILKLSENKFSGNIP--------STLGNLSHLTELQMGGNLFSGEI 646 (1078)
Q Consensus 575 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~g~i 646 (1078)
|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+ ..++.+++|+.|+|++|.++ .+
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCC-CC
T ss_conf 76455578789998999987767944634553468885889973000000046774142337998888889999788-77
Q ss_pred CC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHH-HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 70-0168034899972012223598885558410010111589957578773565-310145101334535799999
Q 001434 647 PP-ELGDLSSLQIALNLSYNNLSGSIPPELGKLDLLEFLLLNNNHLSGEIPSAFE-NLSSLLGSNFSYNNLTGPLPS 721 (1078)
Q Consensus 647 p~-~~~~l~~l~~~l~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~ls~N~l~g~~p~ 721 (1078)
|. .|..+++|+ .|++++|++++..+..|..+.+|+.|+|++|++++..|..+. .+++|+.+++++|++.+.-+.
T Consensus 552 ~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 552 PVEVFKDLFELK-IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHHHCCCCCCCC-EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 977734666752-2389999777679768378988888989999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=541.42 Aligned_cols=323 Identities=20% Similarity=0.195 Sum_probs=147.7
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 68997079986566678864577743868533674333139776576779577845874235333212667888130113
Q 001434 103 VVWSLDLNAMNFTGSLSPSIGGLVHLTYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKIPAELGKLSSLVSLNIC 182 (1078)
Q Consensus 103 ~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~ 182 (1078)
.++.++++++.+.+..+..+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 87688898997787597887178767588788996485697787406676888899985675685453038888989898
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEEEECCCCCC
Q ss_conf 5434577885144986456774016743243565556766545898378643345697755--66655415510346688
Q 001434 183 NNMISGALPEGLGNLSSLVDFVAYTNNLTGPLPQSIGNLRNLRVFRAGQNAISGSIPAEIS--GCQSLQILGLAQNDIGG 260 (1078)
Q Consensus 183 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~ 260 (1078)
+|.+++..|..+.++++|+.|++++|.+.+..|..++++++|++|++++|.+++..+..+. .+++|+.|++++|.+.+
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC
T ss_conf 99668539667415678888989899524667211124556777974588436529788624466632179888982565
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCC
Q ss_conf 8887567544554665047856677875556---7564543430133333443421223223--4301123788888547
Q 001434 261 SLPKEIGMLESLTEIVLWDNQLTGFIPSELG---NCTKLQTLALYSNNLVGQIPKEVGNLKF--LTKLYLYRNELNGTIP 335 (1078)
Q Consensus 261 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~~ 335 (1078)
..+..++.+.+|+.+++.++.+.......+. ..++|+.|++++|.+.+..+..+.+++. |+.|++++|.+.+..+
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 58155532234455430566468056777877753151008874577436468667514676778887787887675680
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCC-----C----CCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 5556766545784269878775212333201533010235525678-----8----986422465671654474245898
Q 001434 336 REIGNLSMVTEIDLSENSLNGEIPTEFSKITGLRLLFLFQNQLTGV-----I----PNELSSLRNLTKLDLSINYLTGPI 406 (1078)
Q Consensus 336 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~----~~~l~~l~~L~~L~Ls~N~l~~~~ 406 (1078)
..++.+++|+.|++++|.+.+..+..|..+++|+.|++++|...+. + ...+..+++|+.|++++|.+.+..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 21167410568557788567658656267888557736331321333335545438656246777888879898268788
Q ss_pred CCCCCCCCCCCEEEEECCC
Q ss_conf 8554233445546730452
Q 001434 407 PVGFQHLTQMRQLQLFENS 425 (1078)
Q Consensus 407 ~~~~~~l~~L~~L~l~~N~ 425 (1078)
+..|..+++|+.|++++|.
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTTTTTCTTCCEEECTTCB
T ss_pred HHHHCCCCCCCEEECCCCC
T ss_conf 5574065687289887980
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=492.08 Aligned_cols=531 Identities=19% Similarity=0.172 Sum_probs=244.8
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 67886457774386853367433313977657677957784587423533321266788813011354345778851449
Q 001434 117 SLSPSIGGLVHLTYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKIPAELGKLSSLVSLNICNNMISGALPEGLGN 196 (1078)
Q Consensus 117 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~ 196 (1078)
.+|..+. .++++|+|++|.+++..|..|+.+++|++|+|++|.+.+..|..|+++++|++|++++|.+++..|..+.
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~- 102 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS- 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS-
T ss_pred CCCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHC-
T ss_conf 2867789--8675898158734717966725676652897889835524851136843367644889856545865523-
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 86456774016743243565556766545898378643345697755666554155103466888887567544554665
Q 001434 197 LSSLVDFVAYTNNLTGPLPQSIGNLRNLRVFRAGQNAISGSIPAEISGCQSLQILGLAQNDIGGSLPKEIGMLESLTEIV 276 (1078)
Q Consensus 197 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 276 (1078)
++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|++|+
T Consensus 103 -----------------------~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 103 -----------------------GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp -----------------------SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred -----------------------CCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf -----------------------442153765212676657810122378223898879834114765456876568777
Q ss_pred ECCCCCCCCCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 047856677875556756454--343013333344342122322343011237888885475556766545784269878
Q 001434 277 LWDNQLTGFIPSELGNCTKLQ--TLALYSNNLVGQIPKEVGNLKFLTKLYLYRNELNGTIPREIGNLSMVTEIDLSENSL 354 (1078)
Q Consensus 277 L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 354 (1078)
+++|.+++..+..++.+++|+ .|++++|.+.+..+..+. ...|+.|++++|. ..+..+..+.++....+..+.+
T Consensus 160 L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~ 235 (606)
T 3t6q_A 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTF 235 (606)
T ss_dssp CCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCC
T ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHH
T ss_conf 65684455496563322156403896679814754866730-0100135567726---6777765133564422002011
Q ss_pred CCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 775212333201533010235525678898642246--567165447424589885542334455467304523468998
Q 001434 355 NGEIPTEFSKITGLRLLFLFQNQLTGVIPNELSSLR--NLTKLDLSINYLTGPIPVGFQHLTQMRQLQLFENSLTGGIPP 432 (1078)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 432 (1078)
... . ...+.+..+..+. +|+.|++++|.+.+..+..|..+++|+.|++++|.++ .+|.
T Consensus 236 ~~~-----------~--------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 236 EDM-----------D--------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp TTS-----------C--------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred CCC-----------C--------CCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 026-----------4--------1226866743032075059994457658557777445667888956288267-7782
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCEEEEECCCCCCCC--CCCCCCC
Q ss_conf 5423685109990388788998911117876650642210024557868-756234624996367766866--5100034
Q 001434 433 GLGLYSLLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYNKLFGNIPTD-VLNCETLLQLRLVGNSLTGSF--PLELCKL 509 (1078)
Q Consensus 433 ~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~~~~L~~L~L~~N~l~~~~--~~~l~~l 509 (1078)
.+..++.|++|++++|.+++..|..+..+++|+.|++++|.+.+.++.. +..+++|++|++++|.+.+.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCC
T ss_conf 14165468889771687686760233015768988898997444346245506675898878899666456752210567
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 4333000233433699952223323330433024532468876-657755561897116644686883322444464775
Q 001434 510 ENLYAIELDQNKFSGPIPPEIENCQKLQRLHIANNYFTSELPK-EVGNLSQLVTFNISSNMLTGLIPPEIVNCMTLQRLD 588 (1078)
Q Consensus 510 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 588 (1078)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 88898989899677578887347745776878888677756521241765588898989855776877873788788898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 13763358887202573348553336654578778866776521077325764878897001680348999720122235
Q 001434 589 ISHNSFVGSLPNELGTLQQLEILKLSENKFSGNIPSTLGNLSHLTELQMGGNLFSGEIPPELGDLSSLQIALNLSYNNLS 668 (1078)
Q Consensus 589 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~l~Ls~N~l~ 668 (1078)
+++|.+++... ..+..++.+++|+.|++++|.+++..|..+..++.|+ .|++++|+++
T Consensus 456 L~~n~l~~~~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~ 513 (606)
T 3t6q_A 456 LQGNHFPKGNI---------------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN-HVDLSHNRLT 513 (606)
T ss_dssp CTTCBCGGGEE---------------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSSCCC
T ss_pred CCCCCCCCCCC---------------------CCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC-EEECCCCCCC
T ss_conf 98998885434---------------------5431240488766887999966706864632656788-8989898068
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9888555841001011158995757877356531014510133453579999
Q 001434 669 GSIPPELGKLDLLEFLLLNNNHLSGEIPSAFENLSSLLGSNFSYNNLTGPLP 720 (1078)
Q Consensus 669 g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 720 (1078)
+.+|..+..++.| .|+|++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 6896684756651-89876894142687662567787889677998616677
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=489.47 Aligned_cols=501 Identities=19% Similarity=0.185 Sum_probs=292.9
Q ss_pred CCCEEEECC--------CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 451693159--------999689970799865666788645777438685336743331397765767795778458742
Q 001434 91 WIGVNCTSD--------FEPVVWSLDLNAMNFTGSLSPSIGGLVHLTYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQF 162 (1078)
Q Consensus 91 W~gv~C~~~--------~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~ 162 (1078)
+..|.|... .+..+..++++++.+++..+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 35333212667888130113543457788514498645677401674324356555676654589837864334569775
Q 001434 163 SGKIPAELGKLSSLVSLNICNNMISGALPEGLGNLSSLVDFVAYTNNLTGPLPQSIGNLRNLRVFRAGQNAISGSIPAEI 242 (1078)
Q Consensus 163 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 242 (1078)
.+..|..|+++++|++|++++|.+++..+.. ++++++|++|++++|.+.+.....+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~~~~ 149 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIP------------------------LHNQKTLESLYLGSNHISSIKLPKG 149 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSC------------------------CTTCTTCCEEECCSSCCCCCCCCTT
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCH------------------------HCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 5458655234421537652126766578101------------------------2237822389887983411476545
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 5666554155103466888887567544554--66504785667787555675645434301333334434212232234
Q 001434 243 SGCQSLQILGLAQNDIGGSLPKEIGMLESLT--EIVLWDNQLTGFIPSELGNCTKLQTLALYSNNLVGQIPKEVGNLKFL 320 (1078)
Q Consensus 243 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 320 (1078)
..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+++..|..+.. .+|+.|++++|.. .+..+.++..+
T Consensus 150 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~ 225 (606)
T 3t6q_A 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNS 225 (606)
T ss_dssp CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTC
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCC
T ss_conf 6876568777656844554965633221564038966798147548667300-1001355677266---77776513356
Q ss_pred CEEECCCCCCC-----CCCCCCCCCCC--CCCEEECCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30112378888-----85475556766--545784269878775212333201533010235525678898642246567
Q 001434 321 TKLYLYRNELN-----GTIPREIGNLS--MVTEIDLSENSLNGEIPTEFSKITGLRLLFLFQNQLTGVIPNELSSLRNLT 393 (1078)
Q Consensus 321 ~~L~L~~N~l~-----~~~~~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 393 (1078)
....+..+.+. ...+..+..+. +|+.|++++|.+.+..+..|..+++|+.|++++|+++ .+|..+..+++|+
T Consensus 226 ~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304 (606)
T ss_dssp EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred CHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCC
T ss_conf 442200201102641226866743032075059994457658557777445667888956288267-7782141654688
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 165447424589885542334455467304523468998-5423685109990388788998911117876650642210
Q 001434 394 KLDLSINYLTGPIPVGFQHLTQMRQLQLFENSLTGGIPP-GLGLYSLLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYN 472 (1078)
Q Consensus 394 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N 472 (1078)
.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..++.|+.|++++|.+++..
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------ 366 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD------------------ 366 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE------------------
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC------------------
T ss_conf 89771687686760233015768988898997444346245506675898878899666456------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 02455786875623462499636776686651000344333000233433699952-22332333043302453246887
Q 001434 473 KLFGNIPTDVLNCETLLQLRLVGNSLTGSFPLELCKLENLYAIELDQNKFSGPIPP-EIENCQKLQRLHIANNYFTSELP 551 (1078)
Q Consensus 473 ~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p 551 (1078)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..|
T Consensus 367 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 367 ----CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp ----ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ----CCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCH
T ss_conf ----7522105678889898989967757888734774577687888867775652124176558889898985577687
Q ss_pred CCCCCCCCCCEEEECCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 6657755561897116644686---8833224444647751376335888720257334855333665457877886677
Q 001434 552 KEVGNLSQLVTFNISSNMLTGL---IPPEIVNCMTLQRLDISHNSFVGSLPNELGTLQQLEILKLSENKFSGNIPSTLGN 628 (1078)
Q Consensus 552 ~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 628 (1078)
..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 78737887888989899888543454312404887668879999667068646326567888989898068689668475
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 652107732576487
Q 001434 629 LSHLTELQMGGNLFS 643 (1078)
Q Consensus 629 l~~L~~L~Ls~N~l~ 643 (1078)
++.| +|++++|.++
T Consensus 523 l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 523 LKGI-YLNLASNHIS 536 (606)
T ss_dssp CCSC-EEECCSSCCC
T ss_pred CCCC-EEECCCCCCC
T ss_conf 6651-8987689414
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=486.96 Aligned_cols=318 Identities=19% Similarity=0.272 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHCCCCC-C-------CCCCCCCCCCCCCCC---CCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 216999999997344588-7-------877966899999854---51693159999689970799865666788645777
Q 001434 58 NSEGHYLLELKNSLHDEF-N-------FLKSWKSTDQTPCSW---IGVNCTSDFEPVVWSLDLNAMNFTGSLSPSIGGLV 126 (1078)
Q Consensus 58 ~~~~~~ll~~k~~~~~~~-~-------~l~sW~~~~~~~C~W---~gv~C~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~ 126 (1078)
..|++||.+++.++.++. . ...+|... .+||.| .||+|+.. ++|+.++|+++++.|.++++++.|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~--~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTT--CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCC--CCEEEEEECCCCCCCCCCHHHHCCC
T ss_conf 78899999999975899745477677657887779-98000147798487678--9788998427665772885785684
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCHHHHHC
Q ss_conf 43868533674333139776576779577845874235333212667888130113543457788514498-64567740
Q 001434 127 HLTYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKIPAELGKLSSLVSLNICNNMISGALPEGLGNL-SSLVDFVA 205 (1078)
Q Consensus 127 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~l 205 (1078)
+|++|+|++|.+... +..++... +...+|... +..|+ ++++.|.+.+..|..+..+ ..+..+++
T Consensus 106 ~L~~L~Ls~N~~~~~-~~~~~~~~-----------~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l 170 (636)
T 4eco_A 106 ELEVLALGSHGEKVN-ERLFGPKG-----------ISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDP 170 (636)
T ss_dssp TCCEEESCCGGGGGT-CCSBSTTS-----------BCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCT
T ss_pred CCEEEECCCCCCCCC-CCCCCCCC-----------CCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 511898768851237-74334532-----------356733888--88887-6577755411706667788777764275
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-----------------CCCCC
Q ss_conf 1674324356555676654589837--8643345697755666554155103466888-----------------88756
Q 001434 206 YTNNLTGPLPQSIGNLRNLRVFRAG--QNAISGSIPAEISGCQSLQILGLAQNDIGGS-----------------LPKEI 266 (1078)
Q Consensus 206 ~~n~l~~~~p~~l~~l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~l 266 (1078)
....+. ......++.+.+. .|.+++ +|..++.+++|++|+|++|.+++. +|..+
T Consensus 171 ~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 171 QQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp TSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred CCCCCC------CCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHH
T ss_conf 546541------013344213001013677750-7877725647878988688236642322122222100102486322
Q ss_pred C--CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC
Q ss_conf 7--54455466504785667787555675645434301333-334-434212232------2343011237888885475
Q 001434 267 G--MLESLTEIVLWDNQLTGFIPSELGNCTKLQTLALYSNN-LVG-QIPKEVGNL------KFLTKLYLYRNELNGTIPR 336 (1078)
Q Consensus 267 ~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~~~ 336 (1078)
+ .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|.
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCC
T ss_conf 004468788898048857762838883499978897847988766533578875430465788888989799377-6676
Q ss_pred --CCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCC
Q ss_conf --5567665457842698787752123332015330102355256788986422465-671654474245
Q 001434 337 --EIGNLSMVTEIDLSENSLNGEIPTEFSKITGLRLLFLFQNQLTGVIPNELSSLRN-LTKLDLSINYLT 403 (1078)
Q Consensus 337 --~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~ 403 (1078)
.++.+++|++|++++|.+.+.+| .|..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred HHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC
T ss_conf 5554257888989690880705166-6478898898989899403-033756510236868985298275
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=485.76 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----CCC--CCC------------CCEEEECCCCCCEEEEECCCCCCCC
Q ss_conf 7972169999999973445887877966899----999--854------------5169315999968997079986566
Q 001434 55 EGLNSEGHYLLELKNSLHDEFNFLKSWKSTD----QTP--CSW------------IGVNCTSDFEPVVWSLDLNAMNFTG 116 (1078)
Q Consensus 55 ~~~~~~~~~ll~~k~~~~~~~~~l~sW~~~~----~~~--C~W------------~gv~C~~~~~~~v~~l~l~~~~l~g 116 (1078)
++..+|+.||++||.++.++ +|+... .+| |.| .||+|+. .++|+.|+|+++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECTTTCCEE
T ss_pred CCCHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCEEEEECCCCCCCC
T ss_conf 46317899999999973799-----9886898653367764034666545335768428369--9979899872478999
Q ss_pred CCCCCCCCCCCCCEEEC-CCCCCCCCCC
Q ss_conf 67886457774386853-3674333139
Q 001434 117 SLSPSIGGLVHLTYLDL-AYNELTGYIP 143 (1078)
Q Consensus 117 ~~~~~l~~l~~L~~L~L-~~n~l~~~~p 143 (1078)
.+|+++++|++|+.|+| ++|.++|..|
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~ 365 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRL 365 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTC
T ss_pred CCCHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 4855774155562843012563356664
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=480.12 Aligned_cols=533 Identities=19% Similarity=0.190 Sum_probs=283.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCC
Q ss_conf 7998656667886457774386853367433313977657677957784587423533-321266788813011354345
Q 001434 109 LNAMNFTGSLSPSIGGLVHLTYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKI-PAELGKLSSLVSLNICNNMIS 187 (1078)
Q Consensus 109 l~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~ 187 (1078)
.++++++. +|. -.++++.|||++|.+++..|..|+.+++|++|+|++|...+.+ |..|.++++|++|+|++|.++
T Consensus 11 cs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 11 YRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp ESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 23799777-898---99986888887786783296677662137088678997744419778537877888879899585
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 778851449864567740167432435655--5676654589837864334569-7755666554155103466888887
Q 001434 188 GALPEGLGNLSSLVDFVAYTNNLTGPLPQS--IGNLRNLRVFRAGQNAISGSIP-AEISGCQSLQILGLAQNDIGGSLPK 264 (1078)
Q Consensus 188 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 264 (1078)
+..|..+.++++|+.|++++|.+.+.+|.. ++++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHH
T ss_conf 31976715786658701767889734046764556679998889878642325665576388989898989847766788
Q ss_pred CCCCC--CCCCEEEECCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 56754--45546650478566778755567564------54343013333344342122322343011237888885475
Q 001434 265 EIGML--ESLTEIVLWDNQLTGFIPSELGNCTK------LQTLALYSNNLVGQIPKEVGNLKFLTKLYLYRNELNGTIPR 336 (1078)
Q Consensus 265 ~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 336 (1078)
.++.+ ++|+.|+++.|.+.+..+..++.+++ |+.|++++|.+.+..+..+....
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l------------------ 228 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI------------------ 228 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS------------------
T ss_pred HCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHC------------------
T ss_conf 75355677503578978866655455332237722357400796578868656778887642------------------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 55676654578426987877521233320153301023552567889864224--6567165447424589885542334
Q 001434 337 EIGNLSMVTEIDLSENSLNGEIPTEFSKITGLRLLFLFQNQLTGVIPNELSSL--RNLTKLDLSINYLTGPIPVGFQHLT 414 (1078)
Q Consensus 337 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~ 414 (1078)
....+..+.++.+.+... +..+.+.......|.++ ++|+.|++++|.+.+..+..|..++
T Consensus 229 ---~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 229 ---SKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp ---CSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred ---CCCCCCCEECCCCCCCCC---------------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf ---744100112121223466---------------44456688985565255547861898979945515863452589
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 45546730452346899854236851099903887889989111178766506422100245578687562346249963
Q 001434 415 QMRQLQLFENSLTGGIPPGLGLYSLLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYNKLFGNIPTDVLNCETLLQLRLV 494 (1078)
Q Consensus 415 ~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~L~ 494 (1078)
+|+.|++++|.+.+..+..+..++.|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEE
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 99999897981898796883688899989898997885187884689999989898998776286661378889998898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 67766866510003443330002334336999522233233304330245324688-76657755561897116644686
Q 001434 495 GNSLTGSFPLELCKLENLYAIELDQNKFSGPIPPEIENCQKLQRLHIANNYFTSEL-PKEVGNLSQLVTFNISSNMLTGL 573 (1078)
Q Consensus 495 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 573 (1078)
+|.++.. ..+++|+.|++++|++. .+|.. ...++.|++++|.+++.. +..+..+++|++|+|++|++.+.
T Consensus 371 ~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 371 DNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp TCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCCCC-----CCCCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 9977861-----68898232005899723-14554---554312214567534575566651277666666778712555
Q ss_pred CCC-CCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 883-3224444647751376335-----8887202573348553336654578778866776521077325764878897
Q 001434 574 IPP-EIVNCMTLQRLDISHNSFV-----GSLPNELGTLQQLEILKLSENKFSGNIPSTLGNLSHLTELQMGGNLFSGEIP 647 (1078)
Q Consensus 574 ~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 647 (1078)
.+. .+..+++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCH
T ss_conf 54333566873100247777364410135535554475536577788985655395570450122156999997874571
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 0016803489997201222359888555841001011158995757877
Q 001434 648 PELGDLSSLQIALNLSYNNLSGSIPPELGKLDLLEFLLLNNNHLSGEIP 696 (1078)
Q Consensus 648 ~~~~~l~~l~~~l~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p 696 (1078)
..+. ++|+ .|++++|++++.+|..+. +|+.|++++|++....+
T Consensus 522 ~~~~--~~L~-~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 522 NDLP--ANLE-ILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCC--SCCC-EEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred HHHH--CCCC-EEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCC
T ss_conf 0110--0455-888988847888966837---76889931997025366
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=477.69 Aligned_cols=535 Identities=22% Similarity=0.223 Sum_probs=366.8
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 86853367433313977657677957784587423533321266788813011354345778851449864567740167
Q 001434 129 TYLDLAYNELTGYIPREIGNCSRLEHLYLNNNQFSGKIPAELGKLSSLVSLNICNNMISGALPEGLGNLSSLVDFVAYTN 208 (1078)
Q Consensus 129 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 208 (1078)
+..|.++++++ .+|. -.++|++|+|++|.+++..|..|..+++|++|++++|...+.+
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i------------------ 64 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI------------------ 64 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE------------------
T ss_pred EEEECCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC------------------
T ss_conf 48982379977-7898---9998688888778678329667766213708867899774441------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCC
Q ss_conf 432435655567665458983786433456977556665541551034668888875--675445546650478566778
Q 001434 209 NLTGPLPQSIGNLRNLRVFRAGQNAISGSIPAEISGCQSLQILGLAQNDIGGSLPKE--IGMLESLTEIVLWDNQLTGFI 286 (1078)
Q Consensus 209 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~ 286 (1078)
.|..|.++++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+.. ++.+++|++|++++|.+++..
T Consensus 65 -----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 65 -----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp -----CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred -----CHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf -----977853787788887989958531976715786658701767889734046764556679998889878642325
Q ss_pred C-CCCCCCCCCCEEEECCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCC
Q ss_conf 7-555675645434301333334434212232--23430112378888854755567665------45784269878775
Q 001434 287 P-SELGNCTKLQTLALYSNNLVGQIPKEVGNL--KFLTKLYLYRNELNGTIPREIGNLSM------VTEIDLSENSLNGE 357 (1078)
Q Consensus 287 p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~l~~l~~------L~~L~Ls~N~l~~~ 357 (1078)
+ ..|+++++|++|++++|.+.+..+..+..+ ++|+.|+++.|.+.+..+..++.+.+ |+.|++++|.+.+.
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred CCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 66557638898989898984776678875355677503578978866655455332237722357400796578868656
Q ss_pred CCHHHHHH---CCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEEECCCCCCCCCC
Q ss_conf 21233320---153301023552567889864224656716544742458988554233--4455467304523468998
Q 001434 358 IPTEFSKI---TGLRLLFLFQNQLTGVIPNELSSLRNLTKLDLSINYLTGPIPVGFQHL--TQMRQLQLFENSLTGGIPP 432 (1078)
Q Consensus 358 ~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~l~~N~l~~~~~~ 432 (1078)
.+..+... .++..+.+..+.+.. .++.+.+.+.....|..+ ++++.|++++|.+.+..+.
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred HHHHHHHHCCCCCCCCEECCCCCCCC---------------CCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 77888764274410011212122346---------------644456688985565255547861898979945515863
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 54236851099903887889989111178766506422100245578687562346249963677668665100034433
Q 001434 433 GLGLYSLLWVVDFSHNYLTGRIPPHLCQNSNLIMLNLGYNKLFGNIPTDVLNCETLLQLRLVGNSLTGSFPLELCKLENL 512 (1078)
Q Consensus 433 ~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~~~~l~~l~~L 512 (1078)
.+..++.|+.|++++|.+++..+..|..+++|+.|+|++|++.+..+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 45258999999897981898796883688899989898997885187884689999989898998776286661378889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCC
Q ss_conf 300023343369995222332333043302453246887665775556189711664468688-3322444464775137
Q 001434 513 YAIELDQNKFSGPIPPEIENCQKLQRLHIANNYFTSELPKEVGNLSQLVTFNISSNMLTGLIP-PEIVNCMTLQRLDISH 591 (1078)
Q Consensus 513 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~ 591 (1078)
+.|++++|.+.+. ..+++|+.|++++|.++. +|.. ..+++.|++++|++.+... ..+..+++|+.|++++
T Consensus 365 ~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 365 QTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCCCCCC-----CCCCCCCHHCCCCCCCCC-CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCC
T ss_conf 9988989977861-----688982320058997231-4554---554312214567534575566651277666666778
Q ss_pred CCCCCCCCC-CCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 633588872-0257334855333665457-----8778866776521077325764878897001680348999720122
Q 001434 592 NSFVGSLPN-ELGTLQQLEILKLSENKFS-----GNIPSTLGNLSHLTELQMGGNLFSGEIPPELGDLSSLQIALNLSYN 665 (1078)
Q Consensus 592 N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~l~Ls~N 665 (1078)
|.+++..+. .+..+++|+.|++++|.++ +..+..+..+++|+.|+|++|.+++..|..+..+++|+ .|+|++|
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N 514 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GLSLNSN 514 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS-EEEEESC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHH-EEECCCC
T ss_conf 712555543335668731002477773644101355355544755365777889856553955704501221-5699999
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 2359888555841001011158995757877356531014510133453579999
Q 001434 666 NLSGSIPPELGKLDLLEFLLLNNNHLSGEIPSAFENLSSLLGSNFSYNNLTGPLP 720 (1078)
Q Consensus 666 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~~p 720 (1078)
++++..|..+. .+|+.|+|++|++++.+|..|. .|..+++++|++.+..+
T Consensus 515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCC
T ss_conf 78745710110--0455888988847888966837---76889931997025366
Done!