Query 001435
Match_columns 1078
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 00:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 8.8E-07 1.9E-11 106.6 66.8 148 125-279 251-401 (880)
2 KOG0161 Myosin class II heavy 99.3 3.5E-05 7.6E-10 100.1 79.6 368 342-724 1119-1530(1930)
3 PRK02224 chromosome segregatio 99.1 8.1E-05 1.8E-09 90.1 72.1 93 109-205 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.1 0.0002 4.4E-09 91.1 79.8 75 128-202 397-471 (1311)
5 TIGR00606 rad50 rad50. This fa 99.1 0.00027 5.9E-09 90.0 74.0 77 170-247 576-652 (1311)
6 PRK03918 chromosome segregatio 98.8 0.0013 2.9E-08 79.5 72.4 42 212-253 244-285 (880)
7 TIGR02168 SMC_prok_B chromosom 98.7 0.0025 5.4E-08 77.8 78.1 10 27-36 124-133 (1179)
8 PRK03918 chromosome segregatio 98.6 0.0058 1.2E-07 74.1 67.1 15 20-34 32-46 (880)
9 TIGR02168 SMC_prok_B chromosom 98.5 0.0076 1.6E-07 73.7 85.0 29 678-706 993-1021(1179)
10 KOG0161 Myosin class II heavy 98.5 0.022 4.8E-07 75.3 83.3 282 36-328 835-1135(1930)
11 PRK01156 chromosome segregatio 98.4 0.017 3.7E-07 70.9 66.3 49 679-727 682-730 (895)
12 PRK01156 chromosome segregatio 98.3 0.024 5.3E-07 69.6 73.5 58 653-710 670-727 (895)
13 COG1196 Smc Chromosome segrega 98.3 0.044 9.5E-07 69.9 81.6 93 54-148 216-311 (1163)
14 PF12128 DUF3584: Protein of u 98.3 0.046 1E-06 70.0 68.4 207 479-689 594-810 (1201)
15 TIGR02169 SMC_prok_A chromosom 98.2 0.04 8.7E-07 68.0 81.4 16 25-40 120-135 (1164)
16 TIGR02169 SMC_prok_A chromosom 98.2 0.052 1.1E-06 67.0 85.0 32 695-726 982-1013(1164)
17 KOG4674 Uncharacterized conser 98.0 0.19 4.2E-06 66.4 73.4 454 40-528 861-1382(1822)
18 KOG1029 Endocytic adaptor prot 97.8 0.027 5.9E-07 68.6 31.4 217 347-587 316-566 (1118)
19 COG0419 SbcC ATPase involved i 97.8 0.25 5.3E-06 61.7 70.7 87 178-264 274-366 (908)
20 COG1196 Smc Chromosome segrega 97.7 0.43 9.3E-06 61.2 75.2 191 24-218 121-342 (1163)
21 PF10174 Cast: RIM-binding pro 97.6 0.43 9.3E-06 59.3 63.8 322 296-629 182-533 (775)
22 PF07888 CALCOCO1: Calcium bin 97.5 0.37 8.1E-06 57.7 41.1 44 684-727 409-452 (546)
23 COG0419 SbcC ATPase involved i 97.4 0.67 1.5E-05 57.9 72.5 63 476-539 557-619 (908)
24 PF01576 Myosin_tail_1: Myosin 97.4 3.9E-05 8.4E-10 94.1 0.0 509 106-698 41-566 (859)
25 PF07888 CALCOCO1: Calcium bin 96.9 1.6 3.5E-05 52.6 41.2 96 488-587 353-448 (546)
26 KOG0250 DNA repair protein RAD 96.9 2.4 5.2E-05 54.3 33.7 106 443-548 358-464 (1074)
27 PF00261 Tropomyosin: Tropomyo 96.8 1 2.2E-05 48.2 26.2 178 227-417 57-234 (237)
28 PF00261 Tropomyosin: Tropomyo 96.7 0.72 1.6E-05 49.4 24.3 60 234-293 92-151 (237)
29 PRK12704 phosphodiesterase; Pr 96.3 0.18 4E-06 59.8 18.1 77 350-433 59-135 (520)
30 PRK11637 AmiB activator; Provi 96.3 1.8 3.9E-05 49.8 25.5 44 300-343 92-135 (428)
31 PF10174 Cast: RIM-binding pro 96.2 5.3 0.00011 50.2 60.9 243 48-333 71-316 (775)
32 PF00038 Filament: Intermediat 96.2 2.4 5.3E-05 46.1 34.2 232 489-735 58-295 (312)
33 PRK11637 AmiB activator; Provi 96.1 3.8 8.2E-05 47.2 28.1 26 591-616 158-183 (428)
34 KOG4674 Uncharacterized conser 96.0 10 0.00023 51.3 77.3 453 47-523 575-1098(1822)
35 KOG0964 Structural maintenance 96.0 7.8 0.00017 49.6 34.9 300 205-521 172-489 (1200)
36 TIGR03319 YmdA_YtgF conserved 95.8 0.39 8.5E-06 57.1 18.1 75 350-431 53-127 (514)
37 PF12128 DUF3584: Protein of u 95.7 11 0.00023 49.3 72.3 86 489-574 675-765 (1201)
38 PF08317 Spc7: Spc7 kinetochor 95.7 2.4 5.2E-05 47.5 22.5 166 397-568 127-292 (325)
39 PRK00106 hypothetical protein; 95.6 0.99 2.1E-05 54.2 20.2 75 350-431 74-148 (535)
40 PF01576 Myosin_tail_1: Myosin 95.5 0.0035 7.6E-08 77.5 0.0 221 45-272 202-429 (859)
41 PRK12704 phosphodiesterase; Pr 95.0 0.33 7.2E-06 57.7 13.9 62 359-423 57-118 (520)
42 TIGR03319 YmdA_YtgF conserved 94.8 0.42 9.1E-06 56.8 13.9 70 359-431 51-120 (514)
43 PHA02562 46 endonuclease subun 94.8 11 0.00024 44.1 27.7 90 455-544 307-396 (562)
44 PRK00106 hypothetical protein; 94.7 1.4 3.1E-05 52.9 18.1 50 361-413 74-123 (535)
45 KOG0018 Structural maintenance 94.7 20 0.00042 46.6 32.0 94 492-588 303-399 (1141)
46 KOG0977 Nuclear envelope prote 94.2 18 0.00039 44.1 29.6 311 130-499 68-384 (546)
47 PF12072 DUF3552: Domain of un 93.9 1.3 2.8E-05 46.6 13.7 70 356-425 61-130 (201)
48 PRK04863 mukB cell division pr 93.7 37 0.00079 45.9 43.1 106 171-277 293-398 (1486)
49 PHA02562 46 endonuclease subun 93.5 19 0.00042 42.2 34.0 99 434-539 307-405 (562)
50 KOG0964 Structural maintenance 92.9 38 0.00083 43.9 33.9 115 314-430 170-297 (1200)
51 PF05701 WEMBL: Weak chloropla 92.4 31 0.00067 41.5 47.9 147 423-587 282-428 (522)
52 PF13851 GAS: Growth-arrest sp 91.8 20 0.00044 38.2 20.1 143 480-639 22-168 (201)
53 PF12072 DUF3552: Domain of un 91.4 5.6 0.00012 42.0 14.5 59 374-432 72-130 (201)
54 KOG1029 Endocytic adaptor prot 91.2 53 0.0012 41.9 29.9 118 439-576 316-433 (1118)
55 KOG0996 Structural maintenance 91.0 66 0.0014 42.6 41.7 338 236-581 269-612 (1293)
56 COG1340 Uncharacterized archae 90.2 39 0.00084 38.6 30.4 54 394-447 30-83 (294)
57 PF00038 Filament: Intermediat 89.8 35 0.00076 37.4 37.2 241 441-698 2-250 (312)
58 PRK12705 hypothetical protein; 89.4 21 0.00046 43.2 18.6 60 357-423 61-120 (508)
59 PF05667 DUF812: Protein of un 87.7 81 0.0018 39.1 24.9 216 254-489 320-544 (594)
60 TIGR03185 DNA_S_dndD DNA sulfu 86.1 95 0.0021 38.2 33.8 17 20-36 37-53 (650)
61 PF05557 MAD: Mitotic checkpoi 85.9 5.5 0.00012 49.0 11.4 22 619-640 618-639 (722)
62 PF05557 MAD: Mitotic checkpoi 84.5 11 0.00023 46.6 13.0 69 256-325 258-326 (722)
63 smart00787 Spc7 Spc7 kinetocho 84.1 84 0.0018 35.9 22.0 167 396-568 121-287 (312)
64 PF08317 Spc7: Spc7 kinetochor 83.8 83 0.0018 35.6 18.8 33 493-525 231-263 (325)
65 KOG0612 Rho-associated, coiled 83.8 1.7E+02 0.0037 39.2 42.3 28 686-714 1016-1043(1317)
66 PRK09039 hypothetical protein; 81.1 1.1E+02 0.0024 35.2 18.8 114 116-233 65-178 (343)
67 PF12718 Tropomyosin_1: Tropom 81.0 69 0.0015 32.7 16.6 90 182-282 11-100 (143)
68 KOG0994 Extracellular matrix g 80.5 2.2E+02 0.0048 38.3 31.7 204 222-431 1520-1740(1758)
69 TIGR01005 eps_transp_fam exopo 79.7 1.5E+02 0.0033 36.8 20.2 72 147-218 184-263 (754)
70 PF13863 DUF4200: Domain of un 79.3 50 0.0011 31.8 12.9 88 364-461 12-99 (126)
71 PF10146 zf-C4H2: Zinc finger- 79.2 77 0.0017 34.9 15.7 77 628-712 4-80 (230)
72 TIGR02680 conserved hypothetic 77.1 2.8E+02 0.0061 37.5 29.6 118 62-194 711-830 (1353)
73 PRK04863 mukB cell division pr 75.7 3.2E+02 0.007 37.6 48.7 30 333-362 505-534 (1486)
74 KOG0250 DNA repair protein RAD 75.7 2.8E+02 0.0061 36.8 52.2 133 128-264 277-410 (1074)
75 PF05262 Borrelia_P83: Borreli 75.5 1.4E+02 0.003 36.4 17.7 70 405-474 189-258 (489)
76 PF06818 Fez1: Fez1; InterPro 75.4 95 0.0021 34.0 14.8 130 444-595 32-170 (202)
77 PF09726 Macoilin: Transmembra 75.3 2.4E+02 0.0052 35.8 26.6 54 357-418 543-597 (697)
78 TIGR03185 DNA_S_dndD DNA sulfu 75.1 2.1E+02 0.0047 35.2 36.4 47 658-704 422-468 (650)
79 PRK12705 hypothetical protein; 74.7 1.6E+02 0.0035 36.0 17.9 60 350-413 65-124 (508)
80 PF09755 DUF2046: Uncharacteri 73.5 1.8E+02 0.004 33.7 20.6 29 570-598 113-141 (310)
81 TIGR01843 type_I_hlyD type I s 72.6 1.7E+02 0.0036 32.9 20.0 53 2-65 47-102 (423)
82 PF00769 ERM: Ezrin/radixin/mo 72.4 1.2E+02 0.0027 33.4 15.1 79 443-521 12-90 (246)
83 PF11559 ADIP: Afadin- and alp 71.1 46 0.001 33.3 10.7 76 396-474 71-146 (151)
84 PRK09039 hypothetical protein; 70.5 2.1E+02 0.0045 33.1 20.2 51 465-515 117-167 (343)
85 PF10473 CENP-F_leu_zip: Leuci 69.9 1.4E+02 0.0031 30.9 18.3 110 468-589 7-116 (140)
86 PF09755 DUF2046: Uncharacteri 69.5 2.2E+02 0.0049 33.0 24.1 162 504-672 32-200 (310)
87 KOG0612 Rho-associated, coiled 69.4 4.1E+02 0.0089 36.0 48.1 67 407-473 625-693 (1317)
88 TIGR03007 pepcterm_ChnLen poly 69.2 2.4E+02 0.0052 33.2 18.9 35 152-186 156-190 (498)
89 PF04111 APG6: Autophagy prote 68.1 79 0.0017 36.0 12.9 16 685-700 166-181 (314)
90 KOG0977 Nuclear envelope prote 65.7 3.4E+02 0.0074 33.7 35.6 275 353-685 90-377 (546)
91 PF04111 APG6: Autophagy prote 64.7 96 0.0021 35.3 12.7 34 479-512 100-133 (314)
92 KOG0804 Cytoplasmic Zn-finger 63.2 2E+02 0.0043 35.1 15.1 109 492-623 347-455 (493)
93 TIGR01000 bacteriocin_acc bact 62.5 1.6E+02 0.0036 34.5 14.5 16 46-61 106-121 (457)
94 KOG4643 Uncharacterized coiled 62.5 5.1E+02 0.011 34.6 46.1 131 396-526 413-550 (1195)
95 PF00769 ERM: Ezrin/radixin/mo 61.5 2E+02 0.0043 31.8 14.0 121 162-282 3-123 (246)
96 COG4026 Uncharacterized protei 60.5 83 0.0018 35.2 10.8 83 480-566 118-205 (290)
97 PF12126 DUF3583: Protein of u 60.2 2.8E+02 0.006 32.3 15.0 121 448-579 4-124 (324)
98 PF10146 zf-C4H2: Zinc finger- 59.6 2.1E+02 0.0046 31.7 13.8 95 473-567 3-103 (230)
99 PF10186 Atg14: UV radiation r 59.6 2.5E+02 0.0055 30.1 16.5 91 250-340 65-155 (302)
100 PF05483 SCP-1: Synaptonemal c 59.1 5E+02 0.011 33.4 68.0 309 211-538 231-566 (786)
101 COG2433 Uncharacterized conser 56.4 1.6E+02 0.0035 36.9 13.3 71 466-540 424-494 (652)
102 COG1579 Zn-ribbon protein, pos 56.4 3.3E+02 0.0072 30.6 20.5 68 339-410 15-82 (239)
103 PLN03188 kinesin-12 family pro 56.4 4.9E+02 0.011 35.5 18.0 151 111-287 1079-1250(1320)
104 COG1340 Uncharacterized archae 55.7 3.8E+02 0.0083 31.0 28.7 25 615-639 132-156 (294)
105 COG4942 Membrane-bound metallo 55.3 4.5E+02 0.0099 31.8 29.3 76 443-521 171-246 (420)
106 PF09325 Vps5: Vps5 C terminal 51.9 3E+02 0.0066 28.8 16.8 65 170-237 162-235 (236)
107 KOG0976 Rho/Rac1-interacting s 51.9 6.9E+02 0.015 32.9 45.4 370 304-725 92-471 (1265)
108 TIGR02977 phageshock_pspA phag 48.9 3.7E+02 0.0081 28.9 17.5 124 26-149 2-137 (219)
109 KOG3200 Uncharacterized conser 48.3 24 0.00052 38.1 4.3 21 808-828 69-89 (224)
110 PRK00409 recombination and DNA 45.2 4.8E+02 0.01 33.5 15.4 105 256-360 489-593 (782)
111 COG1579 Zn-ribbon protein, pos 44.5 5.1E+02 0.011 29.2 22.8 90 505-598 95-184 (239)
112 PRK06800 fliH flagellar assemb 44.3 72 0.0016 34.8 7.1 50 676-725 36-85 (228)
113 PF03904 DUF334: Domain of unk 43.4 5.3E+02 0.011 29.1 14.7 111 492-608 43-154 (230)
114 PF12329 TMF_DNA_bd: TATA elem 42.8 2.3E+02 0.005 26.2 9.2 67 452-528 3-69 (74)
115 PF05701 WEMBL: Weak chloropla 42.2 7.2E+02 0.016 30.3 48.7 66 259-327 169-234 (522)
116 TIGR01843 type_I_hlyD type I s 41.3 5.6E+02 0.012 28.8 19.2 47 201-247 132-178 (423)
117 PF10473 CENP-F_leu_zip: Leuci 41.1 4.4E+02 0.0095 27.5 16.7 100 232-331 1-100 (140)
118 PF08614 ATG16: Autophagy prot 40.7 2.8E+02 0.0061 29.2 10.8 77 216-292 70-146 (194)
119 PF03962 Mnd1: Mnd1 family; I 40.6 4.2E+02 0.0091 28.3 12.0 38 446-483 65-102 (188)
120 PF03962 Mnd1: Mnd1 family; I 40.6 4.4E+02 0.0094 28.2 12.2 21 492-512 76-96 (188)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 40.3 3.9E+02 0.0085 26.7 16.9 96 443-541 17-112 (132)
122 KOG0946 ER-Golgi vesicle-tethe 39.4 1E+03 0.023 31.4 26.8 75 260-342 679-753 (970)
123 PF07106 TBPIP: Tat binding pr 39.2 3.1E+02 0.0068 28.1 10.6 32 443-474 72-103 (169)
124 PTZ00266 NIMA-related protein 39.1 3.2E+02 0.0069 36.3 12.9 13 1019-1031 913-925 (1021)
125 PF11932 DUF3450: Protein of u 39.1 5.5E+02 0.012 28.0 13.5 56 502-557 59-114 (251)
126 PF04871 Uso1_p115_C: Uso1 / p 38.5 4.5E+02 0.0098 26.9 14.3 37 472-508 78-114 (136)
127 TIGR01005 eps_transp_fam exopo 38.3 9E+02 0.02 30.3 18.5 17 128-144 211-227 (754)
128 PF09789 DUF2353: Uncharacteri 37.8 7.3E+02 0.016 29.1 23.0 206 436-657 2-228 (319)
129 TIGR03017 EpsF chain length de 37.7 7E+02 0.015 28.9 19.5 125 146-271 160-298 (444)
130 PF14988 DUF4515: Domain of un 37.5 5.8E+02 0.012 27.8 14.7 111 581-691 7-127 (206)
131 PRK04778 septation ring format 37.4 8.7E+02 0.019 29.9 43.6 411 211-727 89-521 (569)
132 KOG0804 Cytoplasmic Zn-finger 37.0 8.6E+02 0.019 30.0 14.8 75 389-466 373-447 (493)
133 PF04012 PspA_IM30: PspA/IM30 35.6 5.6E+02 0.012 27.1 16.3 64 27-90 2-69 (221)
134 PF15066 CAGE1: Cancer-associa 35.4 9.6E+02 0.021 29.8 21.6 85 476-564 406-490 (527)
135 PF06476 DUF1090: Protein of u 35.4 1.3E+02 0.0028 30.1 6.9 44 127-170 45-90 (115)
136 PF02841 GBP_C: Guanylate-bind 35.2 6.9E+02 0.015 28.0 15.5 9 126-134 41-49 (297)
137 PRK15422 septal ring assembly 34.8 2.5E+02 0.0054 27.0 8.2 55 465-519 12-66 (79)
138 PF14662 CCDC155: Coiled-coil 34.7 6.6E+02 0.014 27.7 19.2 167 126-292 9-188 (193)
139 PRK10698 phage shock protein P 34.3 6.5E+02 0.014 27.5 15.0 64 26-89 2-69 (222)
140 TIGR01069 mutS2 MutS2 family p 34.2 7.2E+02 0.016 32.0 14.6 33 140-172 136-168 (771)
141 TIGR01069 mutS2 MutS2 family p 33.8 8.9E+02 0.019 31.2 15.3 100 255-354 483-582 (771)
142 KOG1962 B-cell receptor-associ 32.9 3.2E+02 0.0068 30.4 9.9 57 504-571 156-212 (216)
143 KOG1103 Predicted coiled-coil 32.5 9.5E+02 0.021 28.9 15.8 8 899-906 467-474 (561)
144 PRK00409 recombination and DNA 32.4 6.4E+02 0.014 32.4 13.8 35 141-175 142-176 (782)
145 KOG4661 Hsp27-ERE-TATA-binding 32.2 5.8E+02 0.013 32.3 12.6 20 585-604 681-700 (940)
146 PF10186 Atg14: UV radiation r 32.0 6.7E+02 0.015 27.0 16.7 16 490-505 138-153 (302)
147 TIGR02680 conserved hypothetic 31.5 1.5E+03 0.033 31.0 28.5 59 613-671 1085-1145(1353)
148 KOG2350 Zn-finger protein join 30.6 61 0.0013 35.5 4.1 50 798-854 55-110 (221)
149 PF09787 Golgin_A5: Golgin sub 30.3 1.1E+03 0.023 28.8 28.6 18 668-685 410-427 (511)
150 PTZ00266 NIMA-related protein 29.9 5.4E+02 0.012 34.4 12.7 9 131-139 128-136 (1021)
151 PRK11519 tyrosine kinase; Prov 29.7 1.2E+03 0.027 29.3 15.5 44 146-189 256-299 (719)
152 PRK10246 exonuclease subunit S 29.5 1.5E+03 0.032 30.1 72.6 148 107-254 164-331 (1047)
153 PF09789 DUF2353: Uncharacteri 29.5 9.8E+02 0.021 28.1 26.0 40 693-732 190-229 (319)
154 KOG1853 LIS1-interacting prote 29.4 9.4E+02 0.02 27.9 15.6 82 190-278 50-131 (333)
155 PF06428 Sec2p: GDP/GTP exchan 29.3 1.3E+02 0.0029 29.5 5.7 68 119-189 2-69 (100)
156 COG1842 PspA Phage shock prote 29.2 8.2E+02 0.018 27.1 12.7 106 130-248 29-134 (225)
157 PRK15422 septal ring assembly 28.1 5.6E+02 0.012 24.8 9.5 58 483-544 6-63 (79)
158 PF09728 Taxilin: Myosin-like 27.7 9.8E+02 0.021 27.5 36.5 65 643-707 230-308 (309)
159 PF11068 YlqD: YlqD protein; 27.4 6.6E+02 0.014 25.8 10.5 73 641-729 18-90 (131)
160 KOG3859 Septins (P-loop GTPase 27.3 5.8E+02 0.013 30.1 11.0 52 396-450 350-401 (406)
161 PF10234 Cluap1: Clusterin-ass 27.1 5.2E+02 0.011 29.5 10.6 95 414-511 157-258 (267)
162 PRK10884 SH3 domain-containing 26.7 6.7E+02 0.015 27.4 11.0 22 490-511 144-165 (206)
163 KOG0995 Centromere-associated 26.5 1.4E+03 0.031 28.9 40.8 315 393-726 219-555 (581)
164 PF09744 Jnk-SapK_ap_N: JNK_SA 26.5 7.9E+02 0.017 26.0 12.7 71 382-458 80-157 (158)
165 PF05622 HOOK: HOOK protein; 26.2 22 0.00048 43.9 0.0 20 119-139 118-137 (713)
166 KOG1003 Actin filament-coating 25.8 9.6E+02 0.021 26.7 22.4 120 307-460 84-203 (205)
167 TIGR02977 phageshock_pspA phag 25.4 8.8E+02 0.019 26.2 12.5 40 208-247 94-133 (219)
168 COG4372 Uncharacterized protei 25.4 1.3E+03 0.028 28.2 23.0 41 286-326 234-274 (499)
169 smart00502 BBC B-Box C-termina 25.2 5.5E+02 0.012 23.7 11.4 38 591-628 49-86 (127)
170 KOG0018 Structural maintenance 24.8 1.9E+03 0.041 29.9 57.0 210 492-719 652-890 (1141)
171 PF04880 NUDE_C: NUDE protein, 24.2 93 0.002 33.0 4.0 6 852-857 141-146 (166)
172 TIGR01010 BexC_CtrB_KpsE polys 24.0 9.2E+02 0.02 27.4 12.0 30 258-287 274-303 (362)
173 KOG2891 Surface glycoprotein [ 23.9 1.2E+03 0.026 27.3 13.8 92 252-349 345-438 (445)
174 PF10212 TTKRSYEDQ: Predicted 23.8 8E+02 0.017 30.6 11.9 112 193-310 403-514 (518)
175 PRK09841 cryptic autophosphory 23.6 1.6E+03 0.034 28.5 17.0 35 285-319 351-385 (726)
176 cd07647 F-BAR_PSTPIP The F-BAR 23.5 9.7E+02 0.021 26.0 18.2 48 560-608 168-215 (239)
177 smart00806 AIP3 Actin interact 22.8 1.5E+03 0.032 27.8 15.8 126 132-259 155-307 (426)
178 PF15254 CCDC14: Coiled-coil d 22.5 1.7E+03 0.036 29.5 14.5 96 514-616 442-537 (861)
179 KOG0980 Actin-binding protein 22.3 2E+03 0.043 29.2 27.5 236 116-359 349-603 (980)
180 PF04156 IncA: IncA protein; 21.9 8.9E+02 0.019 25.0 15.1 28 477-504 94-121 (191)
181 PF14992 TMCO5: TMCO5 family 21.4 1.3E+03 0.028 26.8 13.7 64 353-417 37-100 (280)
182 PF05262 Borrelia_P83: Borreli 21.4 1.6E+03 0.035 27.8 16.3 34 249-282 186-219 (489)
183 PRK10884 SH3 domain-containing 21.4 6.5E+02 0.014 27.5 9.7 52 241-292 118-169 (206)
184 PF05911 DUF869: Plant protein 21.3 1.9E+03 0.042 28.7 20.8 164 70-245 528-712 (769)
185 PRK11281 hypothetical protein; 21.3 2.2E+03 0.047 29.3 27.4 122 218-339 126-262 (1113)
186 PF10498 IFT57: Intra-flagella 20.6 1.4E+03 0.03 27.1 12.7 135 333-470 198-337 (359)
187 PF05529 Bap31: B-cell recepto 20.6 5.6E+02 0.012 26.8 8.8 35 488-522 157-191 (192)
188 PF06103 DUF948: Bacterial pro 20.4 3.4E+02 0.0074 25.1 6.5 53 124-176 25-77 (90)
189 TIGR03545 conserved hypothetic 20.1 6.6E+02 0.014 31.3 10.5 90 381-472 165-262 (555)
190 KOG4657 Uncharacterized conser 20.1 1.3E+03 0.029 26.3 12.1 71 258-328 47-117 (246)
191 KOG0962 DNA repair protein RAD 20.0 2.5E+03 0.053 29.4 70.8 136 603-751 992-1129(1294)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.45 E-value=8.8e-07 Score=106.62 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=62.7
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhh
Q 001435 125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201 (1078)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK---~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE 201 (1078)
+.+..++..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444322 12233333344444444433333333333333334444444444555555555555
Q ss_pred hHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001435 202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (1078)
Q Consensus 202 ~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie 279 (1078)
+.++.....+..+.+.+... +...++.+.+.++.+.....-+..-+..+......+..++.++++....++
T Consensus 331 ~~~~~~l~~~~~~~e~~~~~-------~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 331 EECRVAAQAHNEEAESLRED-------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444444444333333332 333333333333344433333444444444444455555555555544444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.30 E-value=3.5e-05 Score=100.11 Aligned_cols=368 Identities=21% Similarity=0.295 Sum_probs=214.8
Q ss_pred hHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHh
Q 001435 342 HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERS 414 (1078)
Q Consensus 342 h~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ks 414 (1078)
..+.++..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +.=.++.+-+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777776644333333 35666666655555555544444444443 2334455666
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 001435 415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 494 (1078)
Q Consensus 415 k~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEI 494 (1078)
..++.....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..-.++|..|+
T Consensus 1199 e~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666666666667777777777777777777777777776666 4566667777777777778888888899999
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001435 495 DVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1078)
Q Consensus 495 d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~ 574 (1078)
..+=.|.++....+..+-..+..|+.+-+.+ +.++ ...+..+-++..-+. ++..+.+.++.+|.-+.+.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 9888888888888888888888888887766 3333 333444444443332 4555677777777766666
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH-------------------------
Q 001435 575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS------------------------- 629 (1078)
Q Consensus 575 L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~------------------------- 629 (1078)
...-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-.
T Consensus 1345 ~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1345 KNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5421100 11112233445555555555555555555555555555444444322
Q ss_pred ---------HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH
Q 001435 630 ---------FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697 (1078)
Q Consensus 630 ---------L~EREk~FEe---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL 697 (1078)
|..+-+.|+. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|
T Consensus 1424 ~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1424 ERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233321 1122334445555556666666666666665555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001435 698 MVQRQKLEEQRQLLHADREEIQAESER 724 (1078)
Q Consensus 698 ~~ls~KLk~QRE~~~~ERe~f~~~vEk 724 (1078)
..+-.-+-.-...+...+..+-..++.
T Consensus 1504 ~~~~~e~~k~v~elek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1504 EEQKDEGGKRVHELEKEKRRLEQEKEE 1530 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.15 E-value=8.1e-05 Score=90.06 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=64.2
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001435 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188 (1078)
Q Consensus 109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s 188 (1078)
...|.+=+.+.+|+. . +-.+...+.+.+..+..++-...+++......+.. ....++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLG-K-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999983 3 35567778888888888888888888888777766 2245566667777777776666666
Q ss_pred HHhhhhHHHhhhhhHHH
Q 001435 189 SAERKLQEVVAREDDLS 205 (1078)
Q Consensus 189 ~aerkL~eVEaRE~~Lr 205 (1078)
.+...+..+...-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555544444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=0.0002 Score=91.12 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001435 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1078)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~ 202 (1078)
..|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+..+|..+..-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 446677777777777777777777777777777777777777777777766666666666666666665554444
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=0.00027 Score=89.95 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001435 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1078)
Q Consensus 170 E~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q 247 (1078)
...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555555555555 22244555555555555555555
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.0013 Score=79.49 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001435 212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1078)
Q Consensus 212 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqR 253 (1078)
..+....+..+..-...+.+|+..+.+.+..+...+.++.+.
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~ 285 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554445556666666666666666655555443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.72 E-value=0.0025 Score=77.76 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHHHHHccC
Q 001435 27 IWKRLKEAGL 36 (1078)
Q Consensus 27 iWkr~~eaG~ 36 (1078)
+=..|..+|+
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3444555555
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.57 E-value=0.0058 Score=74.14 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.1
Q ss_pred CCCCcHHHHHHHHHc
Q 001435 20 SPLSDESIWKRLKEA 34 (1078)
Q Consensus 20 ~~~~d~~iWkr~~ea 34 (1078)
+++|-..+...+.=|
T Consensus 32 nG~GKStil~ai~~~ 46 (880)
T PRK03918 32 NGSGKSSILEAILVG 46 (880)
T ss_pred CCCCHHHHHHHHHHH
Confidence 556667776665543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.54 E-value=0.0076 Score=73.71 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=14.3
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001435 678 MDRQRRDREWAELNNSIEELMVQRQKLEE 706 (1078)
Q Consensus 678 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 706 (1078)
..-..+..+..++...++.|...-.++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444443
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.46 E-value=0.022 Score=75.33 Aligned_cols=282 Identities=22% Similarity=0.223 Sum_probs=148.6
Q ss_pred CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 001435 36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 113 (1078)
Q Consensus 36 ~De~s~~rrD~~--aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKRE 113 (1078)
-+++-|..+|.. .|-..+.+-|+..=++--+|--++-|+-.++.....=+.-.+++++.+.+..+.-.-+=.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l---- 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL---- 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356666666543 34556666777777888888888888888888888778888888888888776544321111
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001435 114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1078)
Q Consensus 114 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK-----------------~tsesKLaEA~aLv~~~eeKslEvE~Kl~aA 176 (1078)
..+..-+..+..=.++|++-.+++..++.+.+ .+.+.++-....=+.+ ..+..+||-.+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11122222222222334444444444433332 2222222222222222 22333344333
Q ss_pred hHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 001435 177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256 (1078)
Q Consensus 177 ea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~ 256 (1078)
...+-+++| .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..-...
T Consensus 987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333322 22233444444445555555555666666666666666666666655555555555555555544455
Q ss_pred hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001435 257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1078)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~ 328 (1078)
..+-+..++.++-+|-.++.+++.....+..-.-.|..--+.+..-++++..-+..+.+-|+....|...|.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666665554444443333333333444445555555555555665555555443
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.017 Score=70.91 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=22.3
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001435 679 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727 (1078)
Q Consensus 679 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ 727 (1078)
....+..+...++.+|..|...-..++++-+.+..+...+..+++.++.
T Consensus 682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~ 730 (895)
T PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554444444444444444444444444433
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=98.32 E-value=0.024 Score=69.58 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001435 653 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 710 (1078)
Q Consensus 653 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~ 710 (1078)
.....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777777666544455444443
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.25 E-value=0.044 Score=69.86 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 001435 54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 130 (1078)
Q Consensus 54 skLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadL 130 (1078)
-.|..++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-+.++..+..-.++...+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666663 45566667777777777777776633 344444555556666666667777666666777766
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 001435 131 EKAVHEIRAESAETKVAA 148 (1078)
Q Consensus 131 EKAL~emr~E~AeiK~ts 148 (1078)
...+.++-.+.+.++-..
T Consensus 294 ~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 294 KEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777766666665433
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.25 E-value=0.046 Score=69.95 Aligned_cols=207 Identities=14% Similarity=0.275 Sum_probs=148.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001435 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 558 (1078)
Q Consensus 479 ER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK 558 (1078)
++.+|......|.++++.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988888888888888888888877777777766666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001435 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 638 (1078)
Q Consensus 559 ~Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FE 638 (1078)
..+..-+..+...+..+..+-..|- .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776665553 455566666666666666566666666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001435 639 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 689 (1078)
Q Consensus 639 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 689 (1078)
+ ....+|.. |+- .-..++.+++++..++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33344432 221 445567888888899999998888887766666666654
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.22 E-value=0.04 Score=68.02 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.4
Q ss_pred HHHHHHHHHccCChHH
Q 001435 25 ESIWKRLKEAGLDEVS 40 (1078)
Q Consensus 25 ~~iWkr~~eaG~De~s 40 (1078)
.++=..|...||+..+
T Consensus 120 ~~~~~~l~~~~~~~~~ 135 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPEG 135 (1164)
T ss_pred HHHHHHHHHcCCCcCc
Confidence 3455568888986543
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.16 E-value=0.052 Score=67.03 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001435 695 EELMVQRQKLEEQRQLLHADREEIQAESERLK 726 (1078)
Q Consensus 695 eeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK 726 (1078)
+++...-..|.+|++.+...+..|...|+.|+
T Consensus 982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666666666666665
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.96 E-value=0.19 Score=66.38 Aligned_cols=454 Identities=18% Similarity=0.217 Sum_probs=239.7
Q ss_pred HHhhhcHHHHHHHHHHHHHHHh-------hh---hhccchhhhhh-------------hhhh---hhHHHHHHHHHHHHH
Q 001435 40 SIKRRDKAALIAYIAKLETEIF-------EH---QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 93 (1078)
Q Consensus 40 s~~rrD~~aLia~IskLE~Ely-------dY---QynMGLLLiEk-------------KEwt---SK~eelkqa~~eae~ 93 (1078)
+-.+.+.+-|-.+++.|++.|- .| +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888752 11 34666555442 2333 455666778888889
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001435 94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173 (1078)
Q Consensus 94 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl 173 (1078)
+|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998888888888888877765544344456677777777777777778888888888887777766554444332
Q ss_pred hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHHHHHHHHHHHHhhhh
Q 001435 174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL 250 (1078)
Q Consensus 174 ~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~q---Re~L~eweKkLqe~eerL~e~q~~L 250 (1078)
-.+++..+.+-.. |..++........-|+.++..- .+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2333333333332 3333344444444444443221 2334444444444444444444444
Q ss_pred hhhhHhhHhhHHHHhHhHHHHH----HHhhcHH---HHHHHHhhhhhhhhHhHH--HhhhhHHHHHHHHHH--HHHhHHh
Q 001435 251 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK 319 (1078)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLE----e~k~kie---~~~~~Lk~ke~dl~~r~~--~l~~rEe~~~~~~~~--Le~KEke 319 (1078)
-++..-.-+..+-....++-|+ ...+.|. ..+..|...=+.+....+ .++.-..-...+... .--+|++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence 4443333333322222222222 2222221 122222222222222222 111111111111110 1124555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001435 320 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG 383 (1078)
Q Consensus 320 Ll~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~---------eeEle~K~~~~E-~rEv------el~ 383 (1078)
+..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..+. .+|- +..
T Consensus 1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555433322 22333444444455555555555 344555555554 2222 223
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001435 384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD 451 (1078)
Q Consensus 384 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~-------~L-----~~ekEel~~lK~d 451 (1078)
+-.+++ +.|..+.+++.-.=.-|..-++.|+..=....++=+.|+.+.. .| ..|+.++..++.+
T Consensus 1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 333333 3444444444433333333333443333333333333333222 12 2347788888888
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001435 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1078)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 528 (1078)
|......+++....|.+-... +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887666666555443 4455578888888888888899999999999999999988876665
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.027 Score=68.60 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=128.3
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001435 347 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 417 (1078)
Q Consensus 347 ~~Kk~eFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L 417 (1078)
|.|+-.|+ +|||..|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665 788888888888777777766666543 22333 3334455667777777666654332 223333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001435 418 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 485 (1078)
Q Consensus 418 KEkEksL~aeEK~--le~e-------k~~L~~ekEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~ 485 (1078)
..+|-.-.-.||. ++-+ .+|...+.+.|-.++ ..++--+..|..++.++..-.....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 122222333333332 2334444445555555554443333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001435 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 552 (1078)
Q Consensus 486 LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~-------------~~ 552 (1078)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999998754 34444445555555544322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001435 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (1078)
Q Consensus 553 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~Me 587 (1078)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788888999999999999999988888777776
No 19
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.25 Score=61.65 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhh
Q 001435 178 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 251 (1078)
Q Consensus 178 a~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LN 251 (1078)
..+++..+....+..+++.++.....+....--+.. +.+.....+....+.+..++.++......+.+.....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443333332 23333333444444444444444444444444444444
Q ss_pred hhhHhhHhhHHHH
Q 001435 252 EREDHILSKLQEL 264 (1078)
Q Consensus 252 qREe~~~e~~~~l 264 (1078)
+...-+.++...+
T Consensus 354 ~~~~~~~~~~~~l 366 (908)
T COG0419 354 ELAKLLEERLKEL 366 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.43 Score=61.24 Aligned_cols=191 Identities=22% Similarity=0.274 Sum_probs=104.5
Q ss_pred cHHHHHHHHHccCCh--------------HHHhhhcHHHHHHHH----------HHHHHHHhhhhhccchhhhhhhhhhh
Q 001435 24 DESIWKRLKEAGLDE--------------VSIKRRDKAALIAYI----------AKLETEIFEHQHHMGLLILEKKELAS 79 (1078)
Q Consensus 24 d~~iWkr~~eaG~De--------------~s~~rrD~~aLia~I----------skLE~ElydYQynMGLLLiEkKEwtS 79 (1078)
-.||=.-|...|++. .+++..++..|++-+ .+.+..|-.=+=|+--+=.-..+...
T Consensus 121 ~~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~ 200 (1163)
T COG1196 121 LKDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEK 200 (1163)
T ss_pred HHHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888743 345677777777644 35566777788888888888889999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhh----HH---HHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhh
Q 001435 80 KYEQIKASAEAAELLQKHDRASHLS----AI---AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKF 152 (1078)
Q Consensus 80 K~eelkqa~~eae~~lKREqaAhl~----AL---sEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKL 152 (1078)
+++.|+.....|+..+.-...-... .+ ......-+.+..+++-=..=+.++...+.+.-.++ .....++
T Consensus 201 ~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i----~~~~~~~ 276 (1163)
T COG1196 201 QLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI----EELKSEL 276 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 9999988888887765543322222 22 22222233333333322222222333333322222 2233455
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001435 153 AEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (1078)
Q Consensus 153 aEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1078)
.+...-+...+.....+-.++...+...+-+..........+.+...+...+.-.+..+.++....
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555544444444
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.58 E-value=0.43 Score=59.33 Aligned_cols=322 Identities=19% Similarity=0.272 Sum_probs=191.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHH
Q 001435 296 LVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIK 360 (1078)
Q Consensus 296 ~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~eF-------ElElE~k 360 (1078)
...+.-.|-.+..++..|+.+|++...+-+.|-- ++. ..+|++|+.- +++...| |.|+...
T Consensus 182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777788888899888666443322 222 3568887764 3444454 4555444
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 001435 361 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 440 (1078)
Q Consensus 361 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ 440 (1078)
+..++---. -+.-..++++.........|-. ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-+
T Consensus 258 ~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 258 RSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred Hhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 443321111 1222333344444444443321 333344455666666666666666666666667777777888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001435 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (1078)
Q Consensus 441 ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 520 (1078)
--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd- 412 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD- 412 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888899999999999999999999999999999999887665544455666666666666666666555543322111
Q ss_pred HHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 001435 521 EWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 588 (1078)
Q Consensus 521 EWE~LDEKR~el~------------KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~Meh 588 (1078)
..|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+ |
T Consensus 413 --~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-s 489 (775)
T PF10174_consen 413 --RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-S 489 (775)
T ss_pred --HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H
Confidence 11222222222 23333333444444444444444444444444567777777777777777655 6
Q ss_pred hhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001435 589 EHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS 629 (1078)
Q Consensus 589 Ers~~~eKiq~Erad~l~d~Emqkre---LE~~iq~R~EE~E~~ 629 (1078)
|+..-+.-++.+-+.+.-+.+-+..+ |++.+++.++++++-
T Consensus 490 Ek~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 490 EKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence 77777777777777776666555544 446666666666543
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.55 E-value=0.37 Score=57.73 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001435 684 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727 (1078)
Q Consensus 684 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ 727 (1078)
.=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|++|..
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999998863
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.67 Score=57.94 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001435 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539 (1078)
Q Consensus 476 teeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I 539 (1078)
..++...+..+..+|+...+.++.-. ....+.++++..-..+..-|..|.+.-..++......
T Consensus 557 l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 557 LKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444333 2224444444444444455555555555554444444
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.38 E-value=3.9e-05 Score=94.11 Aligned_cols=509 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001435 106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES 178 (1078)
Q Consensus 106 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEv-------E~Kl~aAea 178 (1078)
|-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++ |.--.+-++
T Consensus 41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~ 120 (859)
T PF01576_consen 41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA 120 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666666666777777777777766444444333333333322222221 222234456
Q ss_pred HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001435 179 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 254 (1078)
Q Consensus 179 ~~AEa~Rk~s~aerkL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqRE 254 (1078)
.+++.-++|+.+--.| ..+.---..|-+.+-.|..|......++..-=.....-++.....+.-|.+.+.-+..-+
T Consensus 121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 6677777775543222 222222233334444444444444444433333334445666666666666666666666
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001435 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1078)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~E 334 (1078)
..+++.......++.++.++...++.. ...+..|+- ....-+..|..+...|..-
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE---- 255 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE---- 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence 666665555555555555555544333 222222211 0011122233333222211
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 001435 335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411 (1078)
Q Consensus 335 IQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~ 411 (1078)
+ -.+..|..+.+..+.+++..+..++++-++|... +..-..+|..+-.+ -+.......+.|.+--+.|.
T Consensus 256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence 0 1345667778888888888888888887776542 22233333333222 23344444556666667777
Q ss_pred HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001435 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 488 (1078)
Q Consensus 412 ~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a---~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~ 488 (1078)
.++..+.+.-..+.+.--.|+.-+..|+.+-+.+.. +|++..+ .++....+++.....++.- -.
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~ 394 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence 777777777777777777787778888877666554 5555444 5566666666544433322 13
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001435 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568 (1078)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~ 568 (1078)
.+..+.|..-.....+..++-.|+.+.......++.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.+
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence 556677777777777788888888887777777777777777777777777655443333332 2222222111111111
Q ss_pred HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001435 569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 648 (1078)
Q Consensus 569 krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~I 648 (1078)
+..++-+. +-+...|..+.-|+..|+.-+-++++.|.+|+..|++.+..=...|
T Consensus 474 ~~~leE~E--------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l 527 (859)
T PF01576_consen 474 QEQLEEAE--------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL 527 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence 11222111 2223455566778888888899999999999999998776544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001435 649 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 698 (1078)
Q Consensus 649 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~ 698 (1078)
-+|..-+..|. +.|.++.-.|++++.+..+|.-.++..+
T Consensus 528 ~~le~~LE~E~-----------k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 528 ESLEAELEEER-----------KERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp --------------------------------------------------
T ss_pred HHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433332222 2344444555555555555444444333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.93 E-value=1.6 Score=52.63 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001435 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1078)
Q Consensus 488 ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 567 (1078)
+.+-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444567788888887776 68899888777777776655443 56778888887776665555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001435 568 HKRDVDSLNREREEFMNKMV 587 (1078)
Q Consensus 568 ~krelE~L~~ekEsF~~~Me 587 (1078)
.+.+-|.|..++-+.|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444443
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.89 E-value=2.4 Score=54.32 Aligned_cols=106 Identities=25% Similarity=0.250 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001435 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1078)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~L-kiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1078)
+++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.|
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333444444444444444444444444 444555554444445566666666666666666666666655555555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001435 522 WEMIDEKREELRKEAERVAVERVVVSK 548 (1078)
Q Consensus 522 WE~LDEKR~el~KEa~~I~eEre~lek 548 (1078)
-+.+..+...|.+-...+..+=..+.+
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555655555666655555544443333
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.78 E-value=1 Score=48.21 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=86.0
Q ss_pred hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHH
Q 001435 227 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 306 (1078)
Q Consensus 227 e~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~ 306 (1078)
+.|..-..+|.+.+.++-+..+.+..=|.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-+
T Consensus 57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555666666665555555554444444444444444444444444
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001435 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1078)
Q Consensus 307 ~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 386 (1078)
+..++.+..-|.+|..+-..|-+=|-.+.+ -.+=+-.++.+-+.|..-|..=..-++--|..+...|
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEK-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332221110 0111122222223333333333344444455566666
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001435 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1078)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1078)
..|..-+-.|..--.+.+....+|+.-+..|
T Consensus 204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666555443
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.73 E-value=0.72 Score=49.35 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001435 234 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293 (1078)
Q Consensus 234 KkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~ 293 (1078)
-++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555554444444444433
No 29
>PRK12704 phosphodiesterase; Provisional
Probab=96.27 E-value=0.18 Score=59.81 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001435 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1078)
Q Consensus 350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK 429 (1078)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..++.+|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443 444556666677777777777777777777777776666666666665555
Q ss_pred HhHH
Q 001435 430 EADL 433 (1078)
Q Consensus 430 ~le~ 433 (1078)
+++.
T Consensus 132 ~~~~ 135 (520)
T PRK12704 132 ELEE 135 (520)
T ss_pred HHHH
Confidence 5543
No 30
>PRK11637 AmiB activator; Provisional
Probab=96.27 E-value=1.8 Score=49.78 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001435 300 LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 343 (1078)
Q Consensus 300 ~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~ 343 (1078)
...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555444433333333333
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.24 E-value=5.3 Score=50.20 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 001435 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI 127 (1078)
Q Consensus 48 aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCV 127 (1078)
.+..-|..|..|| --|..++-|.-+...-.+-|+.+.. ++-++.-+-|=++-|=-+..| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence 4455666677777 6777776666555555555555555 544443322211111111111 1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001435 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1078)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRe 207 (1078)
..|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++ +..-.+.+.+.+.+.+++-..|+--
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l 198 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL 198 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2244677778888888888888877777777777655544431 1111122333333333333222211
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH-HHH-HHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001435 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1078)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee-rL~-e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~L 285 (1078)
.+.++.....-|+ .....++-..+ ... -.|..|...+..|.+..+.+..++-++..++..++....--
T Consensus 199 -------le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 199 -------LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred -------HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 1111111111111 00000100000 000 23555666666666666666666666665555544332211
Q ss_pred hhhhhhhhH-hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001435 286 NEEKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1078)
Q Consensus 286 k~ke~dl~~-r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~ 333 (1078)
......+.. +...+..+-+ ++..+..|..+..||..++-+|......
T Consensus 269 ~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111011111 1111111111 6777777888888888888888766643
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.22 E-value=2.4 Score=46.14 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001435 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 565 (1078)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r 565 (1078)
.|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.+..-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776665555433332222 23456677888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001435 566 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 643 (1078)
Q Consensus 566 ~~~krelE~L~~ekE-sF~~~MehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FEeek~~ 643 (1078)
..|..++..|...-. .+...|..- ...+..-+..=| ...+..+.+-+.++|..++-+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 222222210 122222233333 3444445555555555555544443333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001435 644 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 722 (1078)
Q Consensus 644 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~f~~~v 722 (1078)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233344444444444444444444455555555554433332 22233333344444444455555555
Q ss_pred HHhhhhhhhHhHH
Q 001435 723 ERLKKLEDLKIAV 735 (1078)
Q Consensus 723 EklK~ckncg~~~ 735 (1078)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555555555444
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.10 E-value=3.8 Score=47.22 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001435 591 SEWFTKIQQERADFLLGIEMQKRDLE 616 (1078)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE 616 (1078)
..++..+.+-+.+++..|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555
No 34
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.98 E-value=10 Score=51.26 Aligned_cols=453 Identities=20% Similarity=0.195 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhhhhh----------------hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001435 47 AALIAYIAKLETEIFEHQHHMGLLILEKKELA----------------SKYEQIKASAEAAELLQKHDRASHLSAIAEAR 110 (1078)
Q Consensus 47 ~aLia~IskLE~ElydYQynMGLLLiEkKEwt----------------SK~eelkqa~~eae~~lKREqaAhl~ALsEae 110 (1078)
..+-++|+.|++++-+---+.--|+=|+..|. |..++..+... .+..+..-+...=+...|..
T Consensus 575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~ 653 (1822)
T KOG4674|consen 575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR 653 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 35668889999988777777777777777762 11111111111 11111222222222233333
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh---hhhhhhhHHHHHHH-------HHhhhhHHHHHhhhhhhHHH
Q 001435 111 KREESLKKTLGVEKECIASLEKAVHEIRAESAETKV---AADSKFAEARCMVE-------NAQKKFAEAEAKLHAAESLQ 180 (1078)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~---tsesKLaEA~aLv~-------~~eeKslEvE~Kl~aAea~~ 180 (1078)
++...|.+. +.+|.+-..+||.+.-..+. .|--|+.-++--|+ .+.+....+..=++..+...
T Consensus 654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 23444444455544433332 12223333333333 33344444555677777777
Q ss_pred HHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001435 181 AEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1078)
Q Consensus 181 AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~-------~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqR 253 (1078)
..++--...+..++.-+++.=+.|+.+-..|. .|.+++....+.++..|...+-.....++....++.-+++
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~- 805 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCES- 805 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88888888888999999999888888877665 3455555555555555555555444444444444444442
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHH----HhhhhHHHHHHHH-------HHHHHhHHhHHH
Q 001435 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIERE-------ASLQKKEQKLLV 322 (1078)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~----~l~~rEe~~~~~~-------~~Le~KEkeLl~ 322 (1078)
.+..++.+|..++++++....-++.-..+++.-+. .+..-....+.+. ..+.+.|..+..
T Consensus 806 ---------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 806 ---------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555555555555444444333333222 2222223333333 333344444444
Q ss_pred HHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHHhhhhhhhhhHHHHHhhh
Q 001435 323 SQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWELRDLDLGQREESLLERE 393 (1078)
Q Consensus 323 leEKL~aRE~~EIQKLldeh---~a~L~~Kk~eFElElE~k---rKs~eeEle---~K~~~~E~rEvel~h~Eekl~kRE 393 (1078)
|..+|. .+.++.+..+. .....-+-..|..++++- +..|-.... +=-.....-|.-|..+...+.+--
T Consensus 877 L~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 877 LEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 35666666665 233333334466655554 332222221 111222233333333334444433
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001435 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK 462 (1078)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~--------aeEK~---le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q 462 (1078)
+.++.+.+.+..+--.|+.++..|+..=..|. -.+++ +..+..-++.+...+.....+..+....+.+.
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~d 1033 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQND 1033 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333332211111 11221 12223334444444444444433333333333
Q ss_pred HHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001435 463 KKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1078)
Q Consensus 463 ~~qi~ee~E~LkiteeER----~E~~---~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 523 (1078)
+.. ..+.+....+.- ..|. ..=.+|+++..+|-.+-..|-+.++-+...-..|++-|.
T Consensus 1034 l~~---~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~ 1098 (1822)
T KOG4674|consen 1034 LKT---ETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS 1098 (1822)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH
Confidence 222 222222222211 1111 122456777777777777788888877778888888885
No 35
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=7.8 Score=49.63 Aligned_cols=300 Identities=23% Similarity=0.296 Sum_probs=176.5
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001435 205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 281 (1078)
Q Consensus 205 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie---~~ 281 (1078)
|++.++.--|-+-+...|..-=..+.++=+.|.+..+.|..-|.+=++| +.-+++.-.++|-++...++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666677777888888877888888888888888888877765555 33445566666666665543 33
Q ss_pred HHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 001435 282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 358 (1078)
Q Consensus 282 ~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leE---KL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE 358 (1078)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++ ++.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence 334444433333 33445555666666666555555555433 445555544443 3344444444444433
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001435 359 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 426 (1078)
Q Consensus 359 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksL~a 426 (1078)
-- |++.-..++.=....+.++.++...+ ..+...|..+...+..+..+..||-+| ++.-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11111111111112222222222222 123333444444445555555555443 3444667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001435 427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 506 (1078)
Q Consensus 427 eEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~Llk 506 (1078)
+=..| +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 777888888888888888888888888777777777777777777788888888888888877666666666
Q ss_pred hhHHHHHHHHHHHHH
Q 001435 507 ETDKLQLEKAKFEAE 521 (1078)
Q Consensus 507 Eae~Lk~eKekFE~E 521 (1078)
|.-.|+..-++.+-+
T Consensus 475 EE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666676666555543
No 36
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.84 E-value=0.39 Score=57.07 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001435 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1078)
Q Consensus 350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK 429 (1078)
+.+++.|+...|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444 444555566666666666666666666666666666666666665555555
Q ss_pred Hh
Q 001435 430 EA 431 (1078)
Q Consensus 430 ~l 431 (1078)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.70 E-value=11 Score=49.27 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001435 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 563 (1078)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW----E~LD-EKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~ 563 (1078)
.+++....+..+...+..+...+++++..|..+- -.+. +..+..+--...+..+-+.+..-+.......+.++..
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666555432 2222 4444445555566666677777777777777777778
Q ss_pred HHHHHHhhhhh
Q 001435 564 MRDQHKRDVDS 574 (1078)
Q Consensus 564 ~r~~~krelE~ 574 (1078)
+..+|..+|.+
T Consensus 755 le~~~~~eL~~ 765 (1201)
T PF12128_consen 755 LEQQYNQELAG 765 (1201)
T ss_pred HHHHHHHHHHh
Confidence 88887776644
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.66 E-value=2.4 Score=47.47 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=116.1
Q ss_pred HHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001435 397 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 476 (1078)
Q Consensus 397 e~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lkit 476 (1078)
=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 3444555556666666666666655555555555555555555555555555555555555555555544444333 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001435 477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS 556 (1078)
Q Consensus 477 eeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er 556 (1078)
.-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.+
T Consensus 205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2334444 346677777777788888888999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHHHHHHH
Q 001435 557 LRQERDAMRDQH 568 (1078)
Q Consensus 557 LK~Ek~~~r~~~ 568 (1078)
||..-+.++...
T Consensus 281 Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 281 LKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 39
>PRK00106 hypothetical protein; Provisional
Probab=95.58 E-value=0.99 Score=54.22 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001435 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1078)
Q Consensus 350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK 429 (1078)
+.+++.|+...|..++.++...+.. +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444333 444455555555555555555555555555555555555555544444
Q ss_pred Hh
Q 001435 430 EA 431 (1078)
Q Consensus 430 ~l 431 (1078)
++
T Consensus 147 ~~ 148 (535)
T PRK00106 147 QV 148 (535)
T ss_pred HH
Confidence 44
No 40
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.53 E-value=0.0035 Score=77.49 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhh-------ccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhh
Q 001435 45 DKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLK 117 (1078)
Q Consensus 45 D~~aLia~IskLE~ElydYQy-------nMGLLLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKREEnLk 117 (1078)
.+..|.+...+|++|+-++.. ..+-|--.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|+
T Consensus 202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L~ 277 (859)
T PF01576_consen 202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQLR 277 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHHH
Confidence 344555666677777665544 44445445556666666666555442 1222222334555555566888
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHH
Q 001435 118 KTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEV 197 (1078)
Q Consensus 118 KALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eV 197 (1078)
..|.-|-.+...|++.|.-+..+.+.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-+
T Consensus 278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL 354 (859)
T PF01576_consen 278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRL 354 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999888888666543322 2323332222234455555555556666655555554444
Q ss_pred hhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001435 198 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1078)
Q Consensus 198 EaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1078)
.+=-.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..|....-.++
T Consensus 355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444444444444455554333336678888887777666666666566555555555555544444444
No 41
>PRK12704 phosphodiesterase; Provisional
Probab=95.01 E-value=0.33 Score=57.72 Aligned_cols=62 Identities=31% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001435 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (1078)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 423 (1078)
..+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.
T Consensus 57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~ 118 (520)
T PRK12704 57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE 118 (520)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456655555554 34555566666666555554444444444444444444333333
No 42
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.76 E-value=0.42 Score=56.82 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001435 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1078)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l 431 (1078)
..+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666555554 4455566666666666655555555555555554444444444444444433
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.76 E-value=11 Score=44.07 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001435 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 534 (1078)
Q Consensus 455 ~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~K 534 (1078)
.++.++.++..+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555555655555555555566666555666666677777666666666666666666666654444444445554
Q ss_pred HHHHHHHHHH
Q 001435 535 EAERVAVERV 544 (1078)
Q Consensus 535 Ea~~I~eEre 544 (1078)
++..+..++.
T Consensus 387 ~l~~~~~~~~ 396 (562)
T PHA02562 387 ELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 44
>PRK00106 hypothetical protein; Provisional
Probab=94.72 E-value=1.4 Score=52.93 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001435 361 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1078)
Q Consensus 361 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1078)
+..++.++..++.+++ .++......+.+||..|+.+.+.|..++..|+.+
T Consensus 74 ~lEaeeEi~~~R~ElE---kel~eEr~rL~qrE~rL~qREE~LekRee~Lekr 123 (535)
T PRK00106 74 LLEAKEEARKYREEIE---QEFKSERQELKQIESRLTERATSLDRKDENLSSK 123 (535)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555554 2222222245555555444444443333333333
No 45
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=20 Score=46.61 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHH
Q 001435 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQH 568 (1078)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre---~lek~~~~E~erLK~Ek~~~r~~~ 568 (1078)
-.|......-.-..+.+..++..-++|+++|..++-++++..+|.+.+...|- ++..-...|.++|+.+-...-
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~--- 379 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA--- 379 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---
Confidence 33444444455566778889999999999999999999999999999887554 455555667788877654433
Q ss_pred HhhhhhhhhhHHHHHHhhhh
Q 001435 569 KRDVDSLNREREEFMNKMVH 588 (1078)
Q Consensus 569 krelE~L~~ekEsF~~~Meh 588 (1078)
..+|+.|++...+=-+...|
T Consensus 380 ~~el~~ln~~~r~~~~~ld~ 399 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDH 399 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66666666655544444443
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.18 E-value=18 Score=44.09 Aligned_cols=311 Identities=17% Similarity=0.184 Sum_probs=171.4
Q ss_pred HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001435 130 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS 205 (1078)
Q Consensus 130 LEKAL~emr----~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~Lr 205 (1078)
|+.-+..+| .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~--------------- 132 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA--------------- 132 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 344444444 5778999999999999999999998888887777766555555443332222
Q ss_pred HHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001435 206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1078)
Q Consensus 206 RerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~L 285 (1078)
++...--|+++.+|...|-+.+.-++-.++.+..=++.+...-+...++..+|..+++-++.+...-
T Consensus 133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1222234677888888888888888888888777777777777788888888888888887775443
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhh
Q 001435 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL 363 (1078)
Q Consensus 286 k~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~-~EIQKLl-deh~a~L~~Kk~eFElElE~krKs 363 (1078)
.+-...+..-+..|.-. ...=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus 200 ~d~~n~~q~Lleel~f~----------~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFL----------KRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHhHHHHHHHHHHHH----------HhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33332222222222111 11222333332222 12221 1111110 011122223344566666677777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001435 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1078)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekE 443 (1078)
++.=.+.|+.++...=.--+ ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus 269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 77777777776653110000 00111112222222222222223333344555556666666777777766
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001435 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 499 (1078)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~ 499 (1078)
..+..=++.+...+.+-++..++.- |...|+-.+.-|--||..||.
T Consensus 339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence 6655555555444444444444444 444455555788889999985
No 47
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.87 E-value=1.3 Score=46.61 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001435 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 425 (1078)
Q Consensus 356 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~ 425 (1078)
++...|..++.|+..++.++..+|..|..+|+.|..+...|+.+...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666655555555555555555555544443
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.70 E-value=37 Score=45.92 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=57.7
Q ss_pred HhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhh
Q 001435 171 AKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 250 (1078)
Q Consensus 171 ~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~L 250 (1078)
.|+..|..++..+..+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666667777777777777776665543322222 222223344444455555555555555555
Q ss_pred hhhhHhhHhhHHHHhHhHHHHHHHhhc
Q 001435 251 NEREDHILSKLQELSRKEKELEASRAN 277 (1078)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLEe~k~k 277 (1078)
.+-.+.+.+....+...+.++..++..
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544443
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.51 E-value=19 Score=42.16 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001435 434 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 513 (1078)
Q Consensus 434 ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~ 513 (1078)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 3444444444444444444444443333333333333333333222 233666777777777777777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001435 514 EKAKFEAEWEMIDEKREELRKEAERV 539 (1078)
Q Consensus 514 eKekFE~EWE~LDEKR~el~KEa~~I 539 (1078)
+....+.+|..+...++++.++....
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.93 E-value=38 Score=43.92 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=60.1
Q ss_pred HHhHHhHHHHHHHHhhhhhHHHHHHHHH---hHHHHhhhhhhHH--HHHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 001435 314 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFE--AELAIKYKLAE-----DEIEKKRRAWELRDLDLG 383 (1078)
Q Consensus 314 e~KEkeLl~leEKL~aRE~~EIQKLlde---h~a~L~~Kk~eFE--lElE~krKs~e-----eEle~K~~~~E~rEvel~ 383 (1078)
+.+|.-|.+++|+-..+++ |+.||.. -=-.|+.-|-+++ -+++..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4566677788888887765 5555544 2223333333333 25666777764 333333333444343332
Q ss_pred h---hHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001435 384 Q---REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430 (1078)
Q Consensus 384 h---~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~ 430 (1078)
. .=..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-+
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~ 297 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETK 297 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222333345556666667777777777755555555433
No 51
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.38 E-value=31 Score=41.50 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=77.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001435 423 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 502 (1078)
Q Consensus 423 sL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke 502 (1078)
.|.+..++|+.-+..|.+-+.++..|...++.++.+++..+..+..-+++.......- .-|..++..+|..-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3667777787778888888888888888888888888877777777777665555433 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001435 503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 582 (1078)
Q Consensus 503 ~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF 582 (1078)
....+..+.+. .|..|--.-.++..|++....+.. ....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211 222222222333333332221111 1224555555555555555554444444444444
Q ss_pred HHhhh
Q 001435 583 MNKMV 587 (1078)
Q Consensus 583 ~~~Me 587 (1078)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 52
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.79 E-value=20 Score=38.18 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001435 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (1078)
Q Consensus 480 R~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 559 (1078)
|..-+.|-.-||++|...|......-+...++.++-.+.-.--..+.+.+++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44566777889999999999999999999999999999999999999999999998887665554443322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001435 560 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 635 (1078)
Q Consensus 560 Ek~~~r~~~krelE~L~~ekEsF~---~~MehErs~~~eKiq~Erad~l~d~EmqkreL-E~~iq~R~EE~E~~L~EREk 635 (1078)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23556666666666554 3444555555544442 233332 22222 23455566666666666665
Q ss_pred HHHH
Q 001435 636 AFEE 639 (1078)
Q Consensus 636 ~FEe 639 (1078)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 53
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=91.38 E-value=5.6 Score=41.96 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.2
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001435 374 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1078)
Q Consensus 374 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le 432 (1078)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+..++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777666666666666666555555555553
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=53 Score=41.85 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001435 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 518 (1078)
Q Consensus 439 ~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekF 518 (1078)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++ |.++.++-+. .
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQRe----i 383 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQRE----I 383 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----H
Confidence 355778888899999999999999999999999999999998888888776665544 3333322111 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001435 519 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 576 (1078)
Q Consensus 519 E~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~ 576 (1078)
| -.+-++-.|+.++-.--|+.+++...-|-++.|. ..|.+|..++-|-+-
T Consensus 384 E------~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~iv 433 (1118)
T KOG1029|consen 384 E------RQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEWIV 433 (1118)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence 1 1112222334444444556666666666665543 345555555544443
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.04 E-value=66 Score=42.59 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHH
Q 001435 236 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQK 315 (1078)
Q Consensus 236 Lqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~ 315 (1078)
+++...|+.-.--...+-+.++.=-++..+.+|....++-.-+..++..+.-+.-.+.-.+.. .=..+......+..
T Consensus 269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~---~~~ki~~~~~~~~~ 345 (1293)
T KOG0996|consen 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYE---SRAKIAEMQEELEK 345 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred hHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhh
Q 001435 316 KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHD 395 (1078)
Q Consensus 316 KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqa 395 (1078)
-+.+|...-+|+..-...+.++.-+- .....+-..++.+++.+.-.++..=-..-.+++-.++|.=.++.|-+..
T Consensus 346 ~~e~lk~~~ek~~~e~~~~~~k~e~~-----~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke 420 (1293)
T KOG0996|consen 346 IEEGLKDENEKFDIESNEEVEKNEAV-----KKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE 420 (1293)
T ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHh
Q 001435 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI----IKSDLQKSLSSLDEKKKQVNCAKD 471 (1078)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~----lK~dlEK~~a~~e~q~~qi~ee~E 471 (1078)
+++-.++..+.++-.+.=....-+-...+...++.++.+...|...+.++.. +..++.++..++..-..++.+++.
T Consensus 421 ~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 421 IEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001435 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK 551 (1078)
Q Consensus 472 ~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~ 551 (1078)
.+.+.++|=.-|+-.+..+..-.+.+-....-+++..++.+..--....+...+--+..++.+++.....+=..+...++
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHhh--hhhhhhhHHH
Q 001435 552 DERDSLRQERDAMRDQHKRD--VDSLNREREE 581 (1078)
Q Consensus 552 ~E~erLK~Ek~~~r~~~kre--lE~L~~ekEs 581 (1078)
.=+.++-.-+..|...-.+. |.+|.+.+++
T Consensus 581 ~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 581 KLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.21 E-value=39 Score=38.61 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=36.1
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 001435 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI 447 (1078)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~ 447 (1078)
..|..++..+.++--++-.+.+.+.++=+++++....|..+-.+|-..+.+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777777777777777777777776666666666555543
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.77 E-value=35 Score=37.41 Aligned_cols=241 Identities=25% Similarity=0.330 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001435 441 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 516 (1078)
Q Consensus 441 ekEel~~lK~dl----EK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKe 516 (1078)
+|++|..|++-+ ++.+ +++.+-..+......+.... ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 456666655543 3443 34444444444444444443 3444556677778888888888888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001435 517 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (1078)
Q Consensus 517 kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~---~~r~~~krelE~L~~ekEsF~~~MehErs~~ 593 (1078)
+...+.+.+-.|-.........+. ++-..|+...+ ..+......+.+|.-+-.-.....+.|-..+
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 887777776555444433322222 23333333332 2344455556666655543333444455666
Q ss_pred HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001435 594 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (1078)
Q Consensus 594 ~eKiq~Erad~l~d~E-mqkreLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE 672 (1078)
-..++ ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.-.......+..++.|...+-..
T Consensus 148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence 66655 33333333 456677777777777777666555555555555666666666666666677666666665555
Q ss_pred HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001435 673 RMEINMDRQRRDREWAELNNSIEELM 698 (1078)
Q Consensus 673 R~Ei~~~ke~le~e~aEm~kdIeeL~ 698 (1078)
-+.+...-..+...-+.+.+.|.+|.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHH
Confidence 54444444444444444444444443
No 58
>PRK12705 hypothetical protein; Provisional
Probab=89.44 E-value=21 Score=43.18 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001435 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (1078)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 423 (1078)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666555555 44566666666666666666666555555544444443
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.75 E-value=81 Score=39.07 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=118.5
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001435 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1078)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~ 333 (1078)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34445666667777777776666666665555555555555544444444444444444444443322221110000 2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001435 334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1078)
Q Consensus 334 EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1078)
.+|.+++. -..|..++..+.+..|.-+.++++.=+... ..++-..-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence 22233322 233445555555555555555544332222 222222233344444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001435 414 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484 (1078)
Q Consensus 414 sk~LKEkEksL~aeEK~le~e---------k~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~ 484 (1078)
...++.|+...+...+.++.- ...++.=.-.|.+-+.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444433333321 23455556678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 001435 485 VLEIK 489 (1078)
Q Consensus 485 ~LQ~e 489 (1078)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.08 E-value=95 Score=38.17 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=11.2
Q ss_pred CCCCcHHHHHHHHHccC
Q 001435 20 SPLSDESIWKRLKEAGL 36 (1078)
Q Consensus 20 ~~~~d~~iWkr~~eaG~ 36 (1078)
++.|-..+-..++-+=|
T Consensus 37 Ng~GKttll~ai~~~Ly 53 (650)
T TIGR03185 37 NGAGKTTLLDAIQLALY 53 (650)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 66777777777665433
No 61
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.87 E-value=5.5 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 001435 619 IEKRREELESSFREREKAFEEE 640 (1078)
Q Consensus 619 iq~R~EE~E~~L~EREk~FEee 640 (1078)
..+|..-+--.+..+-..|-+-
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666778888888765
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.48 E-value=11 Score=46.58 Aligned_cols=69 Identities=30% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH
Q 001435 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 325 (1078)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leE 325 (1078)
|+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.-
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444332 3356788888888888888877777777777777777777777654
No 63
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.13 E-value=84 Score=35.93 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=112.6
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001435 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (1078)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki 475 (1078)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++......+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 34455566666666777777766666665555555555555555555555555555555555555555444444333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001435 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1078)
Q Consensus 476 teeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 555 (1078)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24566555555444 34445556667888999999999999999999999999998888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001435 556 SLRQERDAMRDQH 568 (1078)
Q Consensus 556 rLK~Ek~~~r~~~ 568 (1078)
+|+..-..++...
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.85 E-value=83 Score=35.63 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001435 493 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 525 (1078)
Q Consensus 493 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 525 (1078)
+|+.++.+...+....+.+..++..+..+=..+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333333
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.84 E-value=1.7e+02 Score=39.22 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001435 686 EWAELNNSIEELMVQRQKLEEQRQLLHAD 714 (1078)
Q Consensus 686 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E 714 (1078)
--.|++| +-+|..++.+|...|....++
T Consensus 1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 3457788 899999999998887655544
No 66
>PRK09039 hypothetical protein; Validated
Probab=81.07 E-value=1.1e+02 Score=35.18 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=73.4
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001435 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1078)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~ 195 (1078)
|=-.|+.+...-++|+-.|.+|+..+.. +...-+.+....++...-..+++..+....+.+++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778999999999999999999998882 333333333333322222335666666666666666666777777777
Q ss_pred HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHH
Q 001435 196 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 233 (1078)
Q Consensus 196 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe 233 (1078)
-+-+.=.+||.++-++.++..+.+......+..+.+.+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666665544433333333
No 67
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.03 E-value=69 Score=32.72 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=66.8
Q ss_pred HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001435 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 261 (1078)
Q Consensus 182 Ea~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~ 261 (1078)
.|.-+...++-++++++.+-..+-.++.||..=..-.|.++..-...|.+-...|.++..+..... ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667778888888888888888888888888888888888888888888888887776554 334
Q ss_pred HHHhHhHHHHHHHhhcHHHHH
Q 001435 262 QELSRKEKELEASRANVEEKF 282 (1078)
Q Consensus 262 ~~l~~kEkeLEe~k~kie~~~ 282 (1078)
+-+..+|.+|+.+.+++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456667777776666655443
No 68
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.50 E-value=2.2e+02 Score=38.27 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=104.4
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhHH
Q 001435 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 297 (1078)
Q Consensus 222 ~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~k~kie~~~~~Lk~ke~dl~~r~~ 297 (1078)
|..--.+|..-+-+|....--+.-+.. |-++-+++.+....++.. ..-|+++.......-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333445555555555554443333332 334444555544444332 334666666666666666666666665555
Q ss_pred HhhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 001435 298 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368 (1078)
Q Consensus 298 ~l~~rEe~~~~~~-------~~Le~KEkeLl~leEKL--~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEl 368 (1078)
.|+.-.+++...+ ..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5555444444333 34444444444444443 356677888887765554444556666 7777766666666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001435 369 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1078)
Q Consensus 369 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l 431 (1078)
+.|..... .-..+=++|..+ -.+-+.++..|++.|-.+.....+|.-+...|--.++++
T Consensus 1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 55543221 111112222222 123345556666666666555555555555555555444
No 69
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.67 E-value=1.5e+02 Score=36.84 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=38.2
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH--------hhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001435 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA--------ERKLQEVVAREDDLSRRIASFKADCEEK 218 (1078)
Q Consensus 147 tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~a--------erkL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1078)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++... +.+|.++..+=...+-++....+-....
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666667777777777777666655544332 2344444444444444444444333333
No 70
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=79.26 E-value=50 Score=31.76 Aligned_cols=88 Identities=26% Similarity=0.302 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001435 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1078)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekE 443 (1078)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+ ....-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~----------~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE----------AKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888888888888877766654433333 3333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHH
Q 001435 444 EVNIIKSDLQKSLSSLDE 461 (1078)
Q Consensus 444 el~~lK~dlEK~~a~~e~ 461 (1078)
+|..+..+|..+.+.+..
T Consensus 82 ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666655555443
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.20 E-value=77 Score=34.94 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001435 628 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 707 (1078)
Q Consensus 628 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 707 (1078)
..++.+-..|+.-+..-++.+.++...- +=+++..-|+..|..||+ ..-+++-.|+.||..|.+.=..++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888887776654 445555555555555554 55677888999999999888888877
Q ss_pred HHHHH
Q 001435 708 RQLLH 712 (1078)
Q Consensus 708 RE~~~ 712 (1078)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 76643
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.14 E-value=2.8e+02 Score=37.54 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=75.2
Q ss_pred hhhhccchhhhhhhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHh
Q 001435 62 EHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRA 139 (1078)
Q Consensus 62 dYQynMGLLLiEkKEwtSK~eelkqa~--~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~ 139 (1078)
|=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+..
T Consensus 711 dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 711 DGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred CCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788775 7788 654 222 22222222 2335566666666777777767777788888888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001435 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (1078)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL 194 (1078)
+.+. |.++.-|..|+..+..+......+..++..|+..++.+-+....+.+.+
T Consensus 778 e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 778 ELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777 7777888888888877766666666666666655555555444444443
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.68 E-value=3.2e+02 Score=37.55 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHhh
Q 001435 333 NEIQKIIANHESALRVKQSEFEAELAIKYK 362 (1078)
Q Consensus 333 ~EIQKLldeh~a~L~~Kk~eFElElE~krK 362 (1078)
..-++.++.+-..|..+..++|--+++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887766554
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.67 E-value=2.8e+02 Score=36.85 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=87.6
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001435 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1078)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRe 207 (1078)
.+.++.|.....++-. .+-|++.+..=+.....+.-++..|+-.-+|+.+++......-+..+...-+.-++++|+
T Consensus 277 ~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444433 233455556666666666666666677777777777788888888888888888889998
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHH-HHHhhhhhhhhHhhHhhHHHH
Q 001435 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQEL 264 (1078)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL-~e~q~~LNqREe~~~e~~~~l 264 (1078)
-.-+..+..-.+..|..-+......+|.+-..+.++ -.++..+-++++.++-..+.+
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 888888877777777777777777777777776666 444444555555444433333
No 75
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=75.47 E-value=1.4e+02 Score=36.41 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=42.1
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001435 405 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1078)
Q Consensus 405 EKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1078)
+++++++.+-.-...+|..-....+..+..+.++....+.+...+..+++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666666666666666666665555555554433
No 76
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.44 E-value=95 Score=33.97 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001435 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1078)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 523 (1078)
+|-.|+..+--.++.+.....++......+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444433221 1 24444444444455555555555555555554
Q ss_pred hhHHHHHHH---HHHHH------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001435 524 MIDEKREEL---RKEAE------RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 594 (1078)
Q Consensus 524 ~LDEKR~el---~KEa~------~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~ 594 (1078)
.|..--+.+ ....- ....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 00000 00000100 011223333333333 34555667788999999999999997
Q ss_pred H
Q 001435 595 T 595 (1078)
Q Consensus 595 e 595 (1078)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.35 E-value=2.4e+02 Score=35.83 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=29.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 001435 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 418 (1078)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK 418 (1078)
+-++++.+|.|+..-++++-.+|-.+..+|..+ ..++.. ++-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555556666666666666666666666555 222333 445556665555543
No 78
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.15 E-value=2.1e+02 Score=35.22 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 001435 658 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 704 (1078)
Q Consensus 658 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KL 704 (1078)
.+.++.-++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666666666655544443
No 79
>PRK12705 hypothetical protein; Provisional
Probab=74.67 E-value=1.6e+02 Score=36.04 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001435 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1078)
Q Consensus 350 k~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1078)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...|..++.++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444332 222444444444444444444444444444444444444443
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.49 E-value=1.8e+02 Score=33.68 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=12.3
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHH
Q 001435 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQ 598 (1078)
Q Consensus 570 relE~L~~ekEsF~~~MehErs~~~eKiq 598 (1078)
+.+..|..+|-...+.|++|+.-++.+++
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444444444444333
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.62 E-value=1.7e+02 Score=32.86 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=33.6
Q ss_pred CCCCCCccc---ccCCCccccCCCCcHHHHHHHHHccCChHHHhhhcHHHHHHHHHHHHHHHhhhhh
Q 001435 2 ASPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQH 65 (1078)
Q Consensus 2 ~~p~~~~l~---~~~g~rv~~~~~~d~~iWkr~~eaG~De~s~~rrD~~aLia~IskLE~ElydYQy 65 (1078)
.+|..|.++ |..|+.|-.+++= +.+|-..+ ..+...|.+.+..|..++..++-
T Consensus 47 ~~~~~G~v~~i~V~eG~~V~kG~~L----------~~ld~~~~-~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 47 QHLEGGIVREILVREGDRVKAGQVL----------VELDATDV-EADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred ccCCCcEEEEEEeCCCCEecCCCeE----------EEEccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678776 8899988654421 12344444 34667788888888877766543
No 82
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.43 E-value=1.2e+02 Score=33.36 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001435 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1078)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1078)
+.|..+..+..+....+......+..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777776666655555555444444333
No 83
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.13 E-value=46 Score=33.34 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=54.9
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001435 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1078)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1078)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666555554444 447788889999999999999999999999999888888776
No 84
>PRK09039 hypothetical protein; Validated
Probab=70.47 E-value=2.1e+02 Score=33.05 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001435 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (1078)
Q Consensus 465 qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eK 515 (1078)
++..-...|..++..-.+-..-=.-|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666666777888888888666666666655544
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=69.92 E-value=1.4e+02 Score=30.89 Aligned_cols=110 Identities=22% Similarity=0.345 Sum_probs=74.3
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001435 468 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1078)
Q Consensus 468 ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~le 547 (1078)
+-.+.|+.++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444333222345567788888888999999999999999999999999999999999999997777776
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 001435 548 KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE 589 (1078)
Q Consensus 548 k~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~MehE 589 (1078)
+.+.....++ .+|+++...-..+...-+.+
T Consensus 87 k~lq~~q~kv------------~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 87 KELQKKQEKV------------SELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHH
Confidence 6655443333 24555554444444444433
No 86
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.51 E-value=2.2e+02 Score=33.02 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=105.4
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001435 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE----RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1078)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eE----re~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 579 (1078)
|..+-.-||.+-..+-..|-.|-+.-..|+..+-.|.-. =|-++..+..=-+.|+++|..+--.|.++=|.|.-.=
T Consensus 32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L 111 (310)
T PF09755_consen 32 LQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDL 111 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433322 2233333444467899999999888888877776554
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhhhhHHHHHH
Q 001435 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER---EKAFEEEKMREFQQISSLKEKAE 656 (1078)
Q Consensus 580 EsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~ER---Ek~FEeek~~EL~~IN~lkE~a~ 656 (1078)
-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+++ |.+.|.+-+ +|-..+-
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE-------~lvN~L~ 184 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE-------ALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHH
Confidence 455778889999999999999999988888888888888888888888655554 233333332 3444567
Q ss_pred HHHHHHHHHHHHhHHH
Q 001435 657 KELEQVTLEIKRLDLE 672 (1078)
Q Consensus 657 kE~Eev~lE~~rLekE 672 (1078)
+-|.++..|...|+..
T Consensus 185 Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888887777765
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.40 E-value=4.1e+02 Score=36.00 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=31.9
Q ss_pred hhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHhhh
Q 001435 407 EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI--IKSDLQKSLSSLDEKKKQVNCAKDKL 473 (1078)
Q Consensus 407 Ekdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~--lK~dlEK~~a~~e~q~~qi~ee~E~L 473 (1078)
=.++......|.+..+.+....++++..+...+.--.+..+ ++..++..+..+.++..|..-+...+
T Consensus 625 ~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 625 IAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333333333 55555555555555555555554444
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=69.19 E-value=2.4e+02 Score=33.19 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcc
Q 001435 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 186 (1078)
Q Consensus 152 LaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk 186 (1078)
-..+.....-++....+++.+|..|+..+..--++
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555665555555544333
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.13 E-value=79 Score=35.96 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.2
Q ss_pred HHHHHHHhhHHHHHHH
Q 001435 685 REWAELNNSIEELMVQ 700 (1078)
Q Consensus 685 ~e~aEm~kdIeeL~~l 700 (1078)
-.|.||+-=...+.-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3788888766655443
No 90
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.69 E-value=3.4e+02 Score=33.74 Aligned_cols=275 Identities=21% Similarity=0.280 Sum_probs=124.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001435 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1078)
Q Consensus 353 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le 432 (1078)
||+|+-.-|+.+++- -.+....|-.+.+-...++.-..++.++++.+.+==..+..+...|...+-++.
T Consensus 90 ye~El~~ar~~l~e~-----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 90 YEAELATARKLLDET-----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 555555555555443 223333333344444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001435 433 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1078)
Q Consensus 433 ~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk 512 (1078)
.-+...-.=-+++.-++.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=.. ++.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------eI~ 225 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------EIE 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------HHH
Confidence 33333333344555556666666666655555555443 11233333334466666655433221 223
Q ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh-----------hhH
Q 001435 513 LEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN-----------RER 579 (1078)
Q Consensus 513 ~eKekFE~EW--E~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~-----------~ek 579 (1078)
+++.+|..+- +.=|.=+.+|..=+.+|-.+=++. .+.=+.+++.-|++.+..++ ..|
T Consensus 226 e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~----------~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 226 EERRKARRDTTADNREYFKNELALAIREIRAQYEAI----------SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 3344444443 222333333443333333322222 22223334444444444443 233
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001435 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 659 (1078)
Q Consensus 580 EsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~ 659 (1078)
|+... |. ..|-.=|++ |.|+|-.-. .+.++.+.++..|.+=-+.|+..=..- ..+|
T Consensus 296 EEl~~-~R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i 351 (546)
T KOG0977|consen 296 EELRR-IR-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEI 351 (546)
T ss_pred HHHHH-HH-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHH
Confidence 33221 11 111111111 124444333 455677788888888888888643221 2345
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhH
Q 001435 660 EQVTLEIKRLDLERMEINMDRQRRDR 685 (1078)
Q Consensus 660 Eev~lE~~rLekER~Ei~~~ke~le~ 685 (1078)
..|.-|+..|-.|.+.+--.+.-|+-
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 55666666666666665555555554
No 91
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.67 E-value=96 Score=35.34 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001435 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1078)
Q Consensus 479 ER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk 512 (1078)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666777777777777777777765
No 92
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.22 E-value=2e+02 Score=35.07 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001435 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1078)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 571 (1078)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888877777776665544 45556666666666666666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 001435 572 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 623 (1078)
Q Consensus 572 lE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~ 623 (1078)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 5555544433322 33467767666655554443
No 93
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.50 E-value=1.6e+02 Score=34.50 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 001435 46 KAALIAYIAKLETEIF 61 (1078)
Q Consensus 46 ~~aLia~IskLE~Ely 61 (1078)
..+|-+.+++|++++.
T Consensus 106 ~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 106 LDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777664
No 94
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.50 E-value=5.1e+02 Score=34.63 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=78.8
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001435 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 468 (1078)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L-------~~ekEel~~lK~dlEK~~a~~e~q~~qi~e 468 (1078)
|.++.+-|.+.=.++....-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333332222 223445555555555555666665666666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001435 469 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 526 (1078)
Q Consensus 469 e~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 526 (1078)
....|.-..-|.+-+.-+-.+||+.+-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666666666788899988888888888888888888888888877664
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.48 E-value=2e+02 Score=31.81 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=52.2
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH
Q 001435 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (1078)
Q Consensus 162 ~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee 241 (1078)
|+.+..+.+.+|...+.....+.........+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666665555555555555555555555444444444444444433333333222222211111222222333
Q ss_pred HHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHH
Q 001435 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1078)
Q Consensus 242 rL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~ 282 (1078)
.+.+.+..+.+-.+-...++.....++.+|..++.....+.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555566666665555544443
No 96
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.46 E-value=83 Score=35.20 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=67.1
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001435 480 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 554 (1078)
Q Consensus 480 R~E~~~LQ-----~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 554 (1078)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+..+. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455566 899999999999999999999999999999999999999999999999988887665543 456
Q ss_pred hhhHHHHHHHHH
Q 001435 555 DSLRQERDAMRD 566 (1078)
Q Consensus 555 erLK~Ek~~~r~ 566 (1078)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766555543
No 97
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=60.16 E-value=2.8e+02 Score=32.30 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001435 448 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (1078)
Q Consensus 448 lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 527 (1078)
|-..|+.-...|.+---+++.+..+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+|+++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455556666777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001435 528 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1078)
Q Consensus 528 KR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 579 (1078)
+--.|..=+.+|..==.-++++++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777776554 678888888888888887653
No 98
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.60 E-value=2.1e+02 Score=31.66 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=56.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 001435 473 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 548 (1078)
Q Consensus 473 LkiteeER~E~~~LQ~eLKeEId~~R~Qke---~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek- 548 (1078)
++-...=+.+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556677777777777777766543 3456677777777777776666666666666655555555444322
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q 001435 549 --SLKDERDSLRQERDAMRDQ 567 (1078)
Q Consensus 549 --~~~~E~erLK~Ek~~~r~~ 567 (1078)
.++.|...||.+-+.||..
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2234555566665555554
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.58 E-value=2.5e+02 Score=30.13 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=52.3
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001435 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1078)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~a 329 (1078)
+.+...++......+....+.++..+..++.-+..|......+...........+.+......+...+..+..++..+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555555333333444455566666777777777777777777
Q ss_pred hhhHHHHHHHH
Q 001435 330 KESNEIQKIIA 340 (1078)
Q Consensus 330 RE~~EIQKLld 340 (1078)
+-+.-++.|..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 77666665544
No 100
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=59.14 E-value=5e+02 Score=33.41 Aligned_cols=309 Identities=16% Similarity=0.234 Sum_probs=143.2
Q ss_pred hhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh-------HHHHHHHhhcHHHHHH
Q 001435 211 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK-------EKELEASRANVEEKFK 283 (1078)
Q Consensus 211 f~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~k-------EkeLEe~k~kie~~~~ 283 (1078)
+..|+-.+|++++.=---+.+-+-++++..--|.+.|..+|+=++..+.-...|+.. ..+|+.++..+..+-.
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665544444445555555555555555555555555555555555444 4445544444444333
Q ss_pred HHhhhhhhhhHhHHHhhh----hHHHHHHHHHHHHHhHHhHHHHHHHHhhhh---hHHHHHHHHHhHHHHhhhhhhHHHH
Q 001435 284 ALNEEKSNLDLTLVSLLK----REEAVIEREASLQKKEQKLLVSQETLASKE---SNEIQKIIANHESALRVKQSEFEAE 356 (1078)
Q Consensus 284 ~Lk~ke~dl~~r~~~l~~----rEe~~~~~~~~Le~KEkeLl~leEKL~aRE---~~EIQKLldeh~a~L~~Kk~eFElE 356 (1078)
+-+.-+.++......+.. +|-.+.............+..|+-+++.=. ..++|.+-. ++....-+=+|
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~-----~ed~lk~l~~e 385 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKK-----NEDQLKILTME 385 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHH
Confidence 333333333333322221 111222222233333334445555544322 244444322 22222333445
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh------hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001435 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430 (1078)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~ 430 (1078)
|..+-..+++..+.+.. +|+++...-.-|++.. ..+++-.+.|+..+.+|... |.-.++.+.-.+-.
T Consensus 386 Lqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe~~ 458 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLEIQ 458 (786)
T ss_pred HHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Confidence 55555555555544332 2333322222222222 33455555555566655544 33334444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001435 431 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-------MKSEAGELSVLEIKLKEELDVVRAQKLE 503 (1078)
Q Consensus 431 le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-------teeER~E~~~LQ~eLKeEId~~R~Qke~ 503 (1078)
| -...+.=..+-..++.++..++++..+-.+-..+... +.-+++...-==.++.+-|...+.|.+-
T Consensus 459 l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~ 531 (786)
T PF05483_consen 459 L-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEK 531 (786)
T ss_pred H-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3 3333333333333344444444333222222111111 1112222222223567788889999999
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001435 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538 (1078)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~ 538 (1078)
++++++.|......+-.|.+.+-+.-+.-.-|.++
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777766655544444444
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.40 E-value=1.6e+02 Score=36.86 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=50.0
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001435 466 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1078)
Q Consensus 466 i~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~ 540 (1078)
+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666677777777888888888888888877776 455566777888888888887776544
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.39 E-value=3.3e+02 Score=30.55 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001435 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (1078)
Q Consensus 339 ldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 410 (1078)
||-...-|..+..++.-.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333332 33455566666667777777777777766666655555554444444
No 103
>PLN03188 kinesin-12 family protein; Provisional
Probab=56.37 E-value=4.9e+02 Score=35.50 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=88.1
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 001435 111 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183 (1078)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~e-mr------~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa 183 (1078)
-+-|.|+--|..||.|...|.-||+- |. +-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 34578999999999999999999963 32 2333332222222333333333332 223333322
Q ss_pred hcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH-----H---------HHHHHHhhh
Q 001435 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE-----H---------ERLLDAQTL 249 (1078)
Q Consensus 184 ~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~-----e---------erL~e~q~~ 249 (1078)
.+|.. + -|=+.+|.+|.-+...+-.++|+.|++=-|.||.- + =||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 13344555555555556666677776666666532 1 244444445
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001435 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1078)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ 287 (1078)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777778888888888888777776
No 104
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.67 E-value=3.8e+02 Score=31.03 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 001435 615 LENCIEKRREELESSFREREKAFEE 639 (1078)
Q Consensus 615 LE~~iq~R~EE~E~~L~EREk~FEe 639 (1078)
-|..+-.+..+++..|..+.++.+.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777665543
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=55.32 E-value=4.5e+02 Score=31.79 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001435 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1078)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1078)
..|...+..|+--++.+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+.++-|.+
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333444444444445555566666555543 446777777777888888888888888888776654
No 106
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=51.92 E-value=3e+02 Score=28.77 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=45.7
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhh---------hHHHHHHHHHhchHHHHHHHH
Q 001435 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCE---------EKEREIIRERQSLSDRKKILQ 237 (1078)
Q Consensus 170 E~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerlSf~~E~e---------a~E~~~~~qRe~L~eweKkLq 237 (1078)
..|+..|...+.++.++...+.+++..+.. .++.+.-.|..++- =.+..|..+++.+..|+.-+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 445566666667777777777777777754 36777777776643 245678899999999998764
No 107
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.90 E-value=6.9e+02 Score=32.89 Aligned_cols=370 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHH---HHHHHHHHHHHhhhh
Q 001435 304 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE---DEIEKKRRAWELRDL 380 (1078)
Q Consensus 304 e~~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~e---eEle~K~~~~E~rEv 380 (1078)
+.+...+--|.-.+..|.+||-++.-+|.. -.-|++-.+.+..-+.+-|.|||+-+--++ ++|-.|+.++--.=-
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~e--kq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEME--KQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001435 381 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1078)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e 460 (1078)
+|+..=..|..-+-.+..++....+..+.+..|++.++|- ...+.++-..-...+-..-.+-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~------------------~~~nD~~sle~~~~q~~tq~vl 231 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED------------------LIEKDQKSLELHKDQENTQKVL 231 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001435 461 EKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1078)
Q Consensus 461 ~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~ 540 (1078)
....|+.--.+-|....-.- +.|++..+-+-+--.+|..-.-+|+.-......|--.-.+--.+++.++....
T Consensus 232 ~ev~QLss~~q~ltp~rk~~-------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 232 KEVMQLSSQKQTLTPLRKTC-------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHhHhhhhhHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------HHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhh
Q 001435 541 VER-------VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKR 613 (1078)
Q Consensus 541 eEr-------e~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~Emqkr 613 (1078)
.-| +--.+|++.|--.|+.++.++|-..... ++.=|+|-++.. |+|-++-
T Consensus 305 qt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa----rrk~egfddk~~-------------------eLEKkrd 361 (1265)
T KOG0976|consen 305 QTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA----RRKAEGFDDKLN-------------------ELEKKRD 361 (1265)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcchhHHHH-------------------HHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhh
Q 001435 614 DLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 693 (1078)
Q Consensus 614 eLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kd 693 (1078)
.++++...-++-.+..=.+.-...+..-+++ +.|.-||..+-+ +++.+----....|-++....-..+..+....-.-
T Consensus 362 ~al~dvr~i~e~k~nve~elqsL~~l~aerq-eQidelKn~if~-~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 362 MALMDVRSIQEKKENVEEELQSLLELQAERQ-EQIDELKNHIFR-LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001435 694 IEELMVQRQKLEEQRQLLHADREEIQAESERL 725 (1078)
Q Consensus 694 IeeL~~ls~KLk~QRE~~~~ERe~f~~~vEkl 725 (1078)
.+-..+|-.--+--|+--+.--+..++||.-+
T Consensus 440 ~s~fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 440 LSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
No 108
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.95 E-value=3.7e+02 Score=28.91 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=89.7
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhHHHHHHHHHH----HHHHHhh
Q 001435 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (1078)
Q Consensus 26 ~iWkr~~eaG---~De~s~~rrD~~-aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~e----ae~~lKR 97 (1078)
.+|+||..+. ++..--+--|+. .|--+|-.++..|....-.+.-++-.++-..-+|+++...++. |+.+|..
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899998765 566666778999 8888999999999999999999999999999999888776653 3444432
Q ss_pred hhh-hhhhHHH---HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhh
Q 001435 98 DRA-SHLSAIA---EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD 149 (1078)
Q Consensus 98 Eqa-Ahl~ALs---EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tse 149 (1078)
-.- ----||. .++..=..|...+.--+.-|..|..-|+.|+..+.++|..-.
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111222 223344556666777778888899999999998888876544
No 109
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.33 E-value=24 Score=38.09 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.1
Q ss_pred HHHHHHHHHhccCCCCccccC
Q 001435 808 WIKRFADLVFKHSGENSVEND 828 (1078)
Q Consensus 808 WlrKCTskIFk~SP~Kk~e~~ 828 (1078)
||++.+.+|=+++-=++...|
T Consensus 69 wLq~~v~kinnlglF~s~~NH 89 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANH 89 (224)
T ss_pred HHHHHHHHhhcccccCCCcce
Confidence 999999999777655555555
No 110
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.20 E-value=4.8e+02 Score=33.52 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=56.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001435 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (1078)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~EI 335 (1078)
++++..+.+-.=..-++.|+..+......+..--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444333333333333333333444445555555556666666666666666666677
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHH
Q 001435 336 QKIIANHESALRVKQSEFEAELAIK 360 (1078)
Q Consensus 336 QKLldeh~a~L~~Kk~eFElElE~k 360 (1078)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666665544444333
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.47 E-value=5.1e+02 Score=29.18 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=55.3
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001435 505 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 584 (1078)
Q Consensus 505 lkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~ 584 (1078)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444455555555556666666666666666666666666666666666555543 45667788888888
Q ss_pred hhhhhhhhHHHHHH
Q 001435 585 KMVHEHSEWFTKIQ 598 (1078)
Q Consensus 585 ~MehErs~~~eKiq 598 (1078)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88876666666554
No 112
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.30 E-value=72 Score=34.82 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=31.1
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001435 676 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 725 (1078)
Q Consensus 676 i~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEkl 725 (1078)
+..+.+.|..+|.++++....|..-.++|.+-|.+|-+||+.|...+.+.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666555443
No 113
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=43.44 E-value=5.3e+02 Score=29.08 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001435 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 570 (1078)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 570 (1078)
+||+++-.|-.++.+....+......||++=+.|--+-++-++.-.+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888888887777776654 3556777777777777555 55666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001435 571 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1078)
Q Consensus 571 elE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~ 608 (1078)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 5556666666555566666555555554
No 114
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.78 E-value=2.3e+02 Score=26.22 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=49.8
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001435 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1078)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 528 (1078)
+++..++=.++..++-++=++|-.++ .++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665554 88888999999999999999999998888888877766543
No 115
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=42.23 E-value=7.2e+02 Score=30.33 Aligned_cols=66 Identities=23% Similarity=0.224 Sum_probs=43.5
Q ss_pred hhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001435 259 SKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 327 (1078)
Q Consensus 259 e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL 327 (1078)
.+...+..+-.+|..++.-++..+.+-.+-+ ..++..+..++.....++..|...+++|..|...+
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAe---ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAE---EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667767766666655433322 34555556677777888888888888888887777
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.34 E-value=5.6e+02 Score=28.82 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=20.4
Q ss_pred hhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001435 201 EDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1078)
Q Consensus 201 E~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q 247 (1078)
...+..+...+.++...++..+..-+..+..++..+...+..+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443333
No 117
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=41.09 E-value=4.4e+02 Score=27.47 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHH
Q 001435 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 311 (1078)
Q Consensus 232 weKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~ 311 (1078)
|+++.....+-|-..++--.-=+.||..-.+.|...+..++.+-.-.+.+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777887777666667788888888888888888888877777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 001435 312 SLQKKEQKLLVSQETLASKE 331 (1078)
Q Consensus 312 ~Le~KEkeLl~leEKL~aRE 331 (1078)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 118
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.66 E-value=2.8e+02 Score=29.20 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001435 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1078)
Q Consensus 216 ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl 292 (1078)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888877777776655555555544433
No 119
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.62 E-value=4.2e+02 Score=28.33 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 001435 446 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 483 (1078)
Q Consensus 446 ~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~ 483 (1078)
..++..++++...++.-...|...+..+..++..|.+-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455555555555555555555555555555555544
No 120
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.61 E-value=4.4e+02 Score=28.21 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhHHhhHHHH
Q 001435 492 EELDVVRAQKLELMVETDKLQ 512 (1078)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk 512 (1078)
.+|+.++.....|....+.++
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=40.27 E-value=3.9e+02 Score=26.68 Aligned_cols=96 Identities=27% Similarity=0.301 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001435 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1078)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1078)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555566666666666666666666644211111111222256777777788888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001435 523 EMIDEKREELRKEAERVAV 541 (1078)
Q Consensus 523 E~LDEKR~el~KEa~~I~e 541 (1078)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 5 345555555554443
No 122
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.37 E-value=1e+03 Score=31.36 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=47.6
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001435 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1078)
Q Consensus 260 ~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLl 339 (1078)
-...++..-++|++.=+..-++++.|++.-++|+.++-..+..-.+...-.........+|..+ +.++++|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~--------~~e~k~l~ 750 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA--------LSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH--------HHHHHHHH
Confidence 3444555556666666666677888888888888888877766666555555555555555444 34555555
Q ss_pred HHh
Q 001435 340 ANH 342 (1078)
Q Consensus 340 deh 342 (1078)
.+|
T Consensus 751 ~~q 753 (970)
T KOG0946|consen 751 NDQ 753 (970)
T ss_pred HHH
Confidence 443
No 123
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.22 E-value=3.1e+02 Score=28.11 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001435 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1078)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1078)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 124
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=39.13 E-value=3.2e+02 Score=36.31 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=6.0
Q ss_pred ccchhhhHHhhcC
Q 001435 1019 SEIDGMVQEKQMG 1031 (1078)
Q Consensus 1019 s~~~~~~~e~~~g 1031 (1078)
.+---|+-|+-+|
T Consensus 913 ~~~~~~~~~~~~~ 925 (1021)
T PTZ00266 913 LEKRKMLMEKEKG 925 (1021)
T ss_pred HHHHHHHHHHhhh
Confidence 3444455454444
No 125
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.08 E-value=5.5e+02 Score=28.03 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001435 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 557 (1078)
Q Consensus 502 e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erL 557 (1078)
..|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555555555555555555555555544444433
No 126
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.49 E-value=4.5e+02 Score=26.88 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001435 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508 (1078)
Q Consensus 472 ~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEa 508 (1078)
.++.++.|-.+|++|=..|-.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466888999999999999999999998877664444
No 127
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.28 E-value=9e+02 Score=30.32 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHhhhhhh
Q 001435 128 ASLEKAVHEIRAESAET 144 (1078)
Q Consensus 128 adLEKAL~emr~E~Aei 144 (1078)
...|.+|...+.++.-+
T Consensus 211 ~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 211 RDAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 34566666666665554
No 128
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.83 E-value=7.3e+02 Score=29.10 Aligned_cols=206 Identities=26% Similarity=0.325 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001435 436 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 501 (1078)
Q Consensus 436 ~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~--------------~LQ~eLKeEId~~R~Qk 501 (1078)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 4566666777777777777766666666666655544444443333322 12234444455555555
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHhhhhhhhhh
Q 001435 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR---DQHKRDVDSLNRE 578 (1078)
Q Consensus 502 e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r---~~~krelE~L~~e 578 (1078)
.-|..|.+.|++...--..+--+|-++-+..+-....+. ..-+. .|++.|=..-..++ .++++++-++--+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-----~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-----ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-----ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555445555555444444332222221 00000 22222222222222 2344555555555
Q ss_pred HHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001435 579 REEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLKEK 654 (1078)
Q Consensus 579 kEsF~~~MehErs~~~eKi---q~Erad~l~d~EmqkreLE~~-iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~ 654 (1078)
+++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+||-.|.+
T Consensus 156 keEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 156 KEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 3455544443 345566665544433333332 233 599999999999999999999988877
Q ss_pred HHH
Q 001435 655 AEK 657 (1078)
Q Consensus 655 a~k 657 (1078)
+.+
T Consensus 226 le~ 228 (319)
T PF09789_consen 226 LER 228 (319)
T ss_pred HHh
Confidence 653
No 129
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.72 E-value=7e+02 Score=28.86 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=64.5
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH---------hhhhHHHhhhhhHHHHHHhHhhhhhh
Q 001435 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA---------ERKLQEVVAREDDLSRRIASFKADCE 216 (1078)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~a---------erkL~eVEaRE~~LrRerlSf~~E~e 216 (1078)
...+.+...+.....-+++..-++..+|.+|+..+..--+++.-. ..+|.++..+-...+.++....+-..
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777788888888888888888888887766665433 12344444433333333322211110
Q ss_pred hHHH-----HHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHH
Q 001435 217 EKER-----EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKEL 271 (1078)
Q Consensus 217 a~E~-----~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeL 271 (1078)
.... .+ -.=..+......|.+.+..|.+....+...-..+......+...+..|
T Consensus 240 ~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 240 GSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred ccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 0000 00 000123344455555555555555555555555555444444444444
No 130
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=37.51 E-value=5.8e+02 Score=27.82 Aligned_cols=111 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHH
Q 001435 581 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE--EEKMREFQQISSLKEKAEKE 658 (1078)
Q Consensus 581 sF~~~MehErs~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FE--eek~~EL~~IN~lkE~a~kE 658 (1078)
+|+.+=.+++..-..++...-.+-...|+-.+.+|......+..+++..|-++++.+- ...-..|..|..+++...+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------hhhhhhhhhHHHHHHH
Q 001435 659 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELN 691 (1078)
Q Consensus 659 ~Eev~lE~~rLekER~E--------i~~~ke~le~e~aEm~ 691 (1078)
|..+.-++.++..+-.+ .-..|.+|+.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 131
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.44 E-value=8.7e+02 Score=29.86 Aligned_cols=411 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhh
Q 001435 211 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS 290 (1078)
Q Consensus 211 f~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~ 290 (1078)
|.+|--+.-=.|.+-+..+.+-+-.|...+..+.....-|++=-+.-..+...+........+.++.+-.-+-.+=.
T Consensus 89 ~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~--- 165 (569)
T PRK04778 89 FEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP--- 165 (569)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---
Q ss_pred hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHH
Q 001435 291 NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 370 (1078)
Q Consensus 291 dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~ 370 (1078)
+++.++..|..-|.+...|.+=-++=.=++-..++..
T Consensus 166 --------------a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~----------------------------- 202 (569)
T PRK04778 166 --------------ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQ----------------------------- 202 (569)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------------
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH---------HHHHHhHHHHHHHHHH
Q 001435 371 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI---------AFEKEADLKKSLLQKE 441 (1078)
Q Consensus 371 K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~---------aeEK~le~ek~~L~~e 441 (1078)
.+..+..-++.++.==.=+.+..+.|=+-+..|+.==+.|. ..+++|..=+.+|..-
T Consensus 203 --------------l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 203 --------------LEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH-------
Q 001435 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE------- 514 (1078)
Q Consensus 442 kEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~e------- 514 (1078)
...|..+ +|....+.+..=..+|+.--+.|+--..-+...-.....+..-|++++.+-..|..|.+.|++.
T Consensus 269 ~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 269 LALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Q ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhh
Q 001435 515 ---KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 591 (1078)
Q Consensus 515 ---KekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~MehErs 591 (1078)
...|+.+-+.|...-..+..........-..+..-+. .+...++.+.-++.+|-..+.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le---------------el~e~leeie~eq~ei~e~l~---- 407 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE---------------EILKQLEEIEKEQEKLSEMLQ---- 407 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001435 592 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 671 (1078)
Q Consensus 592 ~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLek 671 (1078)
.=+.-|..+.++...+...|. +-.+.-+..++..+=+-.-.-...+.-++.+|..
T Consensus 408 -------------------~Lrk~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 408 -------------------GLRKDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhhh
Q 001435 672 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH---ADREEIQAESERLKK 727 (1078)
Q Consensus 672 ER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~---~ERe~f~~~vEklK~ 727 (1078)
+......|-...+.+..+...+++.|..+..-|-+...++- ..+++|..+......
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~ 521 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAE 521 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.96 E-value=8.6e+02 Score=30.02 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001435 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466 (1078)
Q Consensus 389 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi 466 (1078)
+....+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|++.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777777888888888888887777776433 22244444444444444444444445555555443
No 133
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.56 E-value=5.6e+02 Score=27.13 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=47.0
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHHHHHHhhhhhccchhhhhhhhhhhhHHHHHHHHHH
Q 001435 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA 90 (1078)
Q Consensus 27 iWkr~~eaG---~De~s~~rrD~~aLia-~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~e 90 (1078)
+|+||..+. ++..--+--|+..++. +|-.++..|=...-.++-.+-.++.+.-+|+++...+..
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888765 4666666678887664 677788888888777887777788777777777665543
No 134
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.40 E-value=9.6e+02 Score=29.78 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001435 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1078)
Q Consensus 476 teeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 555 (1078)
+.+=|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999988888888778888876 5788888888777765555556777888888888888888888
Q ss_pred hhHHHHHHH
Q 001435 556 SLRQERDAM 564 (1078)
Q Consensus 556 rLK~Ek~~~ 564 (1078)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 135
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=35.37 E-value=1.3e+02 Score=30.06 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=27.1
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHHH
Q 001435 127 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEAE 170 (1078)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tse--sKLaEA~aLv~~~eeKslEvE 170 (1078)
|+-|++||.++++.|......++ .|+.+.+.=|...+.-+.++-
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~ 90 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQ 90 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999987664443 344444444444444333333
No 136
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.16 E-value=6.9e+02 Score=28.02 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.5
Q ss_pred HHHhHHHHH
Q 001435 126 CIASLEKAV 134 (1078)
Q Consensus 126 CVadLEKAL 134 (1078)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 137
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.81 E-value=2.5e+02 Score=27.05 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001435 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1078)
Q Consensus 465 qi~ee~E~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE 519 (1078)
+|..+.+-+..++=|=.|+----..|.+|++.+|+.+..|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444555444566677777777777777777777777766553
No 138
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.72 E-value=6.6e+02 Score=27.69 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHH---HHHHhhhhHHHHHhhhhh---hHHHHHHhcchhHHhhhhHHHhh
Q 001435 126 CIASLEKAVHEIRAESAETKVAADSKFAEARCM---VENAQKKFAEAEAKLHAA---ESLQAEANRYHRSAERKLQEVVA 199 (1078)
Q Consensus 126 CVadLEKAL~emr~E~AeiK~tsesKLaEA~aL---v~~~eeKslEvE~Kl~aA---ea~~AEa~Rk~s~aerkL~eVEa 199 (1078)
||.||+-.=+.++.|++..+-+-+.=-.-...| +.++.....-.=-=++-| +--+....--...++-...-+-+
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHhHhhhhhhhHHHH---HHHHHhchHHHHHHHHHH----HHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001435 200 REDDLSRRIASFKADCEEKERE---IIRERQSLSDRKKILQQE----HERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1078)
Q Consensus 200 RE~~LrRerlSf~~E~ea~E~~---~~~qRe~L~eweKkLqe~----eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1078)
+-..|-++--++.++.+.+..+ +.-+++-|...-+-|..+ +--++....++++|+.-++++.+-...+..-++
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHhhcHHHHHHHHhhhhhhh
Q 001435 273 ASRANVEEKFKALNEEKSNL 292 (1078)
Q Consensus 273 e~k~kie~~~~~Lk~ke~dl 292 (1078)
+....++.-+...-.-+..+
T Consensus 169 Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 169 EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 139
>PRK10698 phage shock protein PspA; Provisional
Probab=34.26 E-value=6.5e+02 Score=27.50 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=45.2
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhHHHHHHHHH
Q 001435 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAE 89 (1078)
Q Consensus 26 ~iWkr~~eaG---~De~s~~rrD~~-aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eelkqa~~ 89 (1078)
.||+||..+. ++..--+--|+. .|--+|-.++..|.+-...+.-++-.+|...-+|+++...++
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~ 69 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQV 69 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999876 566666777999 777788888888887666666666666666666655554443
No 140
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.19 E-value=7.2e+02 Score=31.96 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001435 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAK 172 (1078)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~K 172 (1078)
+..+++-+|...|...+.-+..++.+..+.-.+
T Consensus 136 ~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 136 DDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555444333
No 141
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.83 E-value=8.9e+02 Score=31.19 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=55.2
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001435 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1078)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~aRE~~E 334 (1078)
.++++..+.+-.-+.-++.|+..+......+.+--.+|......+-.+..++......++...++|....++|..+....
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666555556666666665555444444444444444444444445555555556666666666666666666666
Q ss_pred HHHHHHHhHHHHhhhhhhHH
Q 001435 335 IQKIIANHESALRVKQSEFE 354 (1078)
Q Consensus 335 IQKLldeh~a~L~~Kk~eFE 354 (1078)
++++-.+.+.++..-+.+.+
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555444433
No 142
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.93 E-value=3.2e+02 Score=30.42 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=42.1
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001435 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1078)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 571 (1078)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555566666777777788888777776 79999999999999988643
No 143
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=32.52 E-value=9.5e+02 Score=28.88 Aligned_cols=8 Identities=50% Similarity=0.692 Sum_probs=4.1
Q ss_pred hhhhhhcc
Q 001435 899 IHAARKRR 906 (1078)
Q Consensus 899 ~~agrkrr 906 (1078)
.||.|-+-
T Consensus 467 fhaaRhkf 474 (561)
T KOG1103|consen 467 FHAARHKF 474 (561)
T ss_pred hhhccchh
Confidence 45555543
No 144
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.43 E-value=6.4e+02 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=27.3
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 001435 141 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175 (1078)
Q Consensus 141 ~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~a 175 (1078)
..+|+=.|+..|...+..+..++....+.-.++..
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999998888877776555543
No 145
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=32.17 E-value=5.8e+02 Score=32.29 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 001435 585 KMVHEHSEWFTKIQQERADF 604 (1078)
Q Consensus 585 ~MehErs~~~eKiq~Erad~ 604 (1078)
+++|||..-.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 44455555555665555544
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.97 E-value=6.7e+02 Score=26.96 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhH
Q 001435 490 LKEELDVVRAQKLELM 505 (1078)
Q Consensus 490 LKeEId~~R~Qke~Ll 505 (1078)
|...+...|.+.-..+
T Consensus 138 l~~~l~~~r~~l~~~l 153 (302)
T PF10186_consen 138 LQSQLARRRRQLIQEL 153 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 147
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.50 E-value=1.5e+03 Score=30.98 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001435 613 RDLENCIEKRREELESSFREREKA-FEEEKMREF-QQISSLKEKAEKELEQVTLEIKRLDL 671 (1078)
Q Consensus 613 reLE~~iq~R~EE~E~~L~EREk~-FEeek~~EL-~~IN~lkE~a~kE~Eev~lE~~rLek 671 (1078)
-.|=..|....++.+..|.||++. ||+=-..++ .+|...--.|+.=+..|.-.|..+..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677888888888999999875 666555444 34556666666667777777776665
No 148
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=30.61 E-value=61 Score=35.46 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=36.9
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCCccccCCCCCCCCCCCCccc-cc-----cccCCccccc
Q 001435 798 ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASL-TI-----NSRKRQPVRY 854 (1078)
Q Consensus 798 ~SP~s~~~~SWlrKCTskIFk~SP~Kk~e~~~e~~~~s~~~~~~~-~~-----~~~k~q~iry 854 (1078)
.+|++.+|+-=+-+||.++|.-+-.-++++ |+++...+ +. -.+-+||.++
T Consensus 55 ~~~~~~~p~t~i~~~~p~~~att~k~~aer-------sd~~v~~l~lhkRqffHS~t~qPl~l 110 (221)
T KOG2350|consen 55 NGPVKRTPITHILVCRPKRTATTMKEFAER-------SDGEVEQLRLHKRQFFHSDTCQPLRL 110 (221)
T ss_pred CCCCCCCcchhhhccchHhhhhcccccccc-------cccceeeeccccceeeeccccCCCCH
Confidence 567777888889999999999987777776 45555555 22 4567888876
No 149
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.30 E-value=1.1e+03 Score=28.78 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=10.7
Q ss_pred HhHHHHHHhhhhhhhhhH
Q 001435 668 RLDLERMEINMDRQRRDR 685 (1078)
Q Consensus 668 rLekER~Ei~~~ke~le~ 685 (1078)
.|-.||.-+...-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666666555544
No 150
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=29.89 E-value=5.4e+02 Score=34.35 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 001435 131 EKAVHEIRA 139 (1078)
Q Consensus 131 EKAL~emr~ 139 (1078)
=.||..|+.
T Consensus 128 L~ALaYLHs 136 (1021)
T PTZ00266 128 LHALAYCHN 136 (1021)
T ss_pred HHHHHHHHh
Confidence 345555543
No 151
>PRK11519 tyrosine kinase; Provisional
Probab=29.68 E-value=1.2e+03 Score=29.35 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=29.0
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001435 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1078)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~ 189 (1078)
...+.|...|...++-+++...++..+|..|+..++.--+.+..
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666677777777777777777777777776665555443
No 152
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=29.49 E-value=1.5e+03 Score=30.14 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=66.2
Q ss_pred HHHHHhhHhhhhhhhhHHHHHH---------hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 001435 107 AEARKREESLKKTLGVEKECIA---------SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE 177 (1078)
Q Consensus 107 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAe 177 (1078)
+...-|.+-|.+.+|++.-.-. .....+..++.....+-..++..++....-+..+......+...+-.+.
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~ 243 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQ 243 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999985421 1233444555555554444444444443333333333333222222222
Q ss_pred HHHH------HHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-----hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 001435 178 SLQA------EANRYHRSAERKLQEVVAREDDLSRRIASFK-----ADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 246 (1078)
Q Consensus 178 a~~A------Ea~Rk~s~aerkL~eVEaRE~~LrRerlSf~-----~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~ 246 (1078)
..+. +.......+...+..+..........+..+. ......-..+...+..+...+..+...+..+...
T Consensus 244 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (1047)
T PRK10246 244 QSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQST 323 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0000111122222222222222222222221 1222344445555666666666666666666666
Q ss_pred hhhhhhhh
Q 001435 247 QTLLNERE 254 (1078)
Q Consensus 247 q~~LNqRE 254 (1078)
+..+....
T Consensus 324 ~~~~~~~~ 331 (1047)
T PRK10246 324 MALRARIR 331 (1047)
T ss_pred HHHHHHHH
Confidence 55555444
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.46 E-value=9.8e+02 Score=28.09 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001435 693 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 732 (1078)
Q Consensus 693 dIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ckncg 732 (1078)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999877664
No 154
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=29.45 E-value=9.4e+02 Score=27.86 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=42.9
Q ss_pred HhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHH
Q 001435 190 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 269 (1078)
Q Consensus 190 aerkL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEk 269 (1078)
++-.|.+++.|-.+|.-+---+.+|.++....+..||-..-- ..-+.+.-|.....+-.|=-++ -+.|.|-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~---q~s~Leddlsqt~aikeql~ky----iReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQ---QESQLEDDLSQTHAIKEQLRKY----IRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcc
Confidence 444566666666666666666667777777666666632221 1222233333333333222233 345556666
Q ss_pred HHHHHhhcH
Q 001435 270 ELEASRANV 278 (1078)
Q Consensus 270 eLEe~k~ki 278 (1078)
+||-++...
T Consensus 123 dLErakRat 131 (333)
T KOG1853|consen 123 DLERAKRAT 131 (333)
T ss_pred HHHHhhhhh
Confidence 677666543
No 155
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.26 E-value=1.3e+02 Score=29.51 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=46.6
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001435 119 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1078)
Q Consensus 119 ALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~ 189 (1078)
.|.-|+.=...+|.....|-.|.-+. +.+=|.+||.||+.+......++.|...++..+.++......
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566778888887777763 345579999999988877777777776666666655544333
No 156
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.23 E-value=8.2e+02 Score=27.12 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001435 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1078)
Q Consensus 130 LEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~eVEaRE~~LrRerl 209 (1078)
|+-++++|+.++..++-+...-++..+.+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999988888777777777776666655555554444554444333 223333222 344
Q ss_pred HhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001435 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (1078)
Q Consensus 210 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~ 248 (1078)
++..-+.+++..+..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888887777777777777777777766553
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.13 E-value=5.6e+02 Score=24.80 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001435 483 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544 (1078)
Q Consensus 483 ~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre 544 (1078)
|..|+++.++=||.+ ..|.-|+++||.+......|=..+-.-|..|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456888888888876 5677788888876666555555555555555554444444433
No 158
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=27.68 E-value=9.8e+02 Score=27.51 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=43.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--------------hhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001435 643 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD--------------RQRRDREWAELNNSIEELMVQRQKLEEQ 707 (1078)
Q Consensus 643 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~--------------ke~le~e~aEm~kdIeeL~~ls~KLk~Q 707 (1078)
.-|++=|.+=.....||+.|.--+.+|++|....-.- +..++.+..-+.+-|+.|..|-+-|+.+
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4577788888999999999999999999998765444 3444444444444444444444444443
No 159
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.41 E-value=6.6e+02 Score=25.84 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=46.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001435 641 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 720 (1078)
Q Consensus 641 k~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~ 720 (1078)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777888889999999999999888554433 33344445555555555555556666
Q ss_pred HHHHhhhhh
Q 001435 721 ESERLKKLE 729 (1078)
Q Consensus 721 ~vEklK~ck 729 (1078)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666655554
No 160
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.32 E-value=5.8e+02 Score=30.06 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001435 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 450 (1078)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~ 450 (1078)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.+..-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888888887776532 23345677777777777666655444
No 161
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.13 E-value=5.2e+02 Score=29.55 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=65.4
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q 001435 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIK 489 (1078)
Q Consensus 414 sk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER----~E~~~LQ~e 489 (1078)
--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+..+..+...+.+|..+++=| +||-.|+.+
T Consensus 157 ~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred CcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334555666666655555 4455555666777777777777778888888888888999988877 789999999
Q ss_pred HHHHHHHHHHHH---HHhHHhhHHH
Q 001435 490 LKEELDVVRAQK---LELMVETDKL 511 (1078)
Q Consensus 490 LKeEId~~R~Qk---e~LlkEae~L 511 (1078)
|++--+.|=..- ..|..+.|+.
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999877664432 3444444443
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.73 E-value=6.7e+02 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 001435 490 LKEELDVVRAQKLELMVETDKL 511 (1078)
Q Consensus 490 LKeEId~~R~Qke~LlkEae~L 511 (1078)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 163
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.53 E-value=1.4e+03 Score=28.95 Aligned_cols=315 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHH-hhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 001435 393 EHDLEVQSRALVD-KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471 (1078)
Q Consensus 393 EqaLe~k~~~lkE-KEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E 471 (1078)
+++|.-+++++.. .-+++++.=+...+-+..|. .++.....+...++....|+.|+.|..+.+.+-+..-.+-..
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001435 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK---FEAEWEMIDEKREELRKEAERVAVERVVVSK 548 (1078)
Q Consensus 472 ~LkiteeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKek---FE~EWE~LDEKR~el~KEa~~I~eEre~lek 548 (1078)
.| ..|+.||+..=.+-+.|.++.|+|+.+.++ --.+.+.+--=|.+|.+++.+|.-++..+.+
T Consensus 295 ~l--------------~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 295 KL--------------EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHH-HHHhhhhhhh----------------hHHHHHHHHHHHhhhhhHhh
Q 001435 549 SLKDERDSLRQERDAMRDQHKRDVDSLNREREE-FMNKMVHEHS----------------EWFTKIQQERADFLLGIEMQ 611 (1078)
Q Consensus 549 ~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEs-F~~~MehErs----------------~~~eKiq~Erad~l~d~Emq 611 (1078)
-..+...-+..-...+...+..=...+..=.=. -.+.|--++. ......-.+-+.-++-.++-
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~ 440 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENE 440 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHH
Q 001435 612 KRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELN 691 (1078)
Q Consensus 612 kreLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~ 691 (1078)
+.-|+..+.+.---|+ .++.+=...+.+-..-....+-.|+-++.++..-..|+..|+++-.-.++.-..--.+-.+.=
T Consensus 441 ~~tLq~~~~~~~~~i~-E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v 519 (581)
T KOG0995|consen 441 LETLQEHFSNKASTIE-EKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELV 519 (581)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001435 692 NSIE-ELMVQRQKLEEQRQLLHADREEIQAESERLK 726 (1078)
Q Consensus 692 kdIe-eL~~ls~KLk~QRE~~~~ERe~f~~~vEklK 726 (1078)
+.|+ +|.-...-....|.-.++.=.++|.+|=+++
T Consensus 520 ~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k 555 (581)
T KOG0995|consen 520 KSIELELDRMVATGEEERQKIAKQLFAVIDQISDFK 555 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 164
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.49 E-value=7.9e+02 Score=26.00 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=38.4
Q ss_pred hhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhh-------hHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001435 382 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHL-------LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454 (1078)
Q Consensus 382 l~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~-------LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK 454 (1078)
+...|+..-...++|..+...|.+-.+-|..+++. |.+.+-.|+..-+.+ -..+++-+..++.-+++
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555544444 444444444444444 34566777788888887
Q ss_pred hhhh
Q 001435 455 SLSS 458 (1078)
Q Consensus 455 ~~a~ 458 (1078)
.+..
T Consensus 154 ~k~~ 157 (158)
T PF09744_consen 154 QKDE 157 (158)
T ss_pred HHhc
Confidence 7654
No 165
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.18 E-value=22 Score=43.95 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=12.0
Q ss_pred hhhhHHHHHHhHHHHHHHHHh
Q 001435 119 TLGVEKECIASLEKAVHEIRA 139 (1078)
Q Consensus 119 ALgvEKqCVadLEKAL~emr~ 139 (1078)
-||.-=+|--. |....-|..
T Consensus 118 lLgcAV~c~~k-e~yI~~I~~ 137 (713)
T PF05622_consen 118 LLGCAVQCENK-EEYIQRIME 137 (713)
T ss_dssp HHHHTTSSSTH-HHHHHHHHH
T ss_pred HHHHhhcCccH-HHHHHHHHC
Confidence 35666667655 666665554
No 166
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=25.84 E-value=9.6e+02 Score=26.75 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=66.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001435 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1078)
Q Consensus 307 ~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~eFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 386 (1078)
+.+-..|-++|.+|-..+++..+-|+.- ..|..+ + +-+...+++ |...+
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~-~eLeEe---------------~----~~~~~nlk~-----------l~~~e 132 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQS-EELEED---------------L----RILDSNLKS-----------LSAKE 132 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH---------------H----HHhHhHHHH-----------HHHHH
Confidence 3455678888999988888888777532 212111 1 111222222 33345
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001435 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1078)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e 460 (1078)
+++..++-..+.++..+.+|=+.-+.+-... |++....+|.+..=-..|...++....++.+|-.+..+++
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555556666666655555444444443 3555555555555455566666666666766666665554
No 167
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=25.38 E-value=8.8e+02 Score=26.16 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=21.2
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001435 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1078)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q 247 (1078)
+.++..-...++.++..++..+...+..|.+.+..|.+.+
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555443
No 168
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.38 E-value=1.3e+03 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHH
Q 001435 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 326 (1078)
Q Consensus 286 k~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEK 326 (1078)
......|..+--.++.|++.+-+++..|.--|..+.-||.-
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667777666666666666555555443
No 169
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.24 E-value=5.5e+02 Score=23.74 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 001435 591 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 628 (1078)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE~~iq~R~EE~E~ 628 (1078)
..+...+...+..|+..|+-........|......++.
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 170
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.76 E-value=1.9e+03 Score=29.88 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----
Q 001435 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ---- 567 (1078)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~---- 567 (1078)
.++|.++.+++-|+.+..+|.. +.+ |-....-|..-|+..+.+..-+-+.+.+. .+.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~----l~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRS----LEQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555 333 44444445555555555544444444422 23344555555544
Q ss_pred ------HHhhhhhhhhhHHHHHHhhhhhhhhHHH----------------HHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 001435 568 ------HKRDVDSLNREREEFMNKMVHEHSEWFT----------------KIQQERADFLLGIEMQKRDLENCIEKRREE 625 (1078)
Q Consensus 568 ------~krelE~L~~ekEsF~~~MehErs~~~e----------------Kiq~Erad~l~d~EmqkreLE~~iq~R~EE 625 (1078)
+++.++.......+...+|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+.
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~- 802 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ- 802 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec-
Confidence 3455555555555555555421122211 12888888888999999999888764433
Q ss_pred HHhHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH
Q 001435 626 LESSFR---EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ 702 (1078)
Q Consensus 626 ~E~~L~---EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~ 702 (1078)
++.+ +|...+=+.-+.+++.+---.+.+.+++-.+ .+|.. ++ ..-=+..+.+|.+.++...-|+..-.
T Consensus 803 --~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~t 873 (1141)
T KOG0018|consen 803 --KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELT 873 (1141)
T ss_pred --ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3444444555566666666666666666665 44433 22 22233455677777777777776666
Q ss_pred HHHHHHHHHHHhHHHHH
Q 001435 703 KLEEQRQLLHADREEIQ 719 (1078)
Q Consensus 703 KLk~QRE~~~~ERe~f~ 719 (1078)
||..++-.+-..++++.
T Consensus 874 kl~~~i~~~es~ie~~~ 890 (1141)
T KOG0018|consen 874 KLDKEITSIESKIERKE 890 (1141)
T ss_pred HHhhhhhhhhhHHHHHH
Confidence 66665555555544443
No 171
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.23 E-value=93 Score=33.05 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=0.0
Q ss_pred cccccC
Q 001435 852 VRYSFG 857 (1078)
Q Consensus 852 irya~g 857 (1078)
+--+||
T Consensus 141 ~~~s~~ 146 (166)
T PF04880_consen 141 LSTSFG 146 (166)
T ss_dssp ------
T ss_pred cCcCcc
Confidence 333444
No 172
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.01 E-value=9.2e+02 Score=27.44 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=17.5
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001435 258 LSKLQELSRKEKELEASRANVEEKFKALNE 287 (1078)
Q Consensus 258 ~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ 287 (1078)
+.....+..++++++-++...+.....+++
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666655555443
No 173
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.88 E-value=1.2e+03 Score=27.29 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=53.8
Q ss_pred hhhHhhHhhHHHHhHhHHHHHHHhhcHHH--HHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001435 252 EREDHILSKLQELSRKEKELEASRANVEE--KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1078)
Q Consensus 252 qREe~~~e~~~~l~~kEkeLEe~k~kie~--~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~a 329 (1078)
.|++.+.++.+.-...++++|+....--- -...|+-.-..+..|-.--..+| +..|..-++.+-.||+++-.
T Consensus 345 kr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqke------eeklk~e~qkikeleek~~e 418 (445)
T KOG2891|consen 345 KREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKE------EEKLKAEEQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666654432211 11333333334443332222222 23455556778889999999
Q ss_pred hhhHHHHHHHHHhHHHHhhh
Q 001435 330 KESNEIQKIIANHESALRVK 349 (1078)
Q Consensus 330 RE~~EIQKLldeh~a~L~~K 349 (1078)
-|..-.+-|+.-|.+-|...
T Consensus 419 eedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 419 EEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 99988888888888776543
No 174
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.78 E-value=8e+02 Score=30.61 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=70.7
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001435 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1078)
Q Consensus 193 kL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1078)
...|.++||+.++ .+|....+-.-..+..-.--......-.+-...||.-.........+.+.+-.+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788885533 3444444443333333333333344444455555555555556666778888889999999999
Q ss_pred HHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHH
Q 001435 273 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (1078)
Q Consensus 273 e~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~ 310 (1078)
..+..-+.-+.++-+--..++.+|+ ...++++.++
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9999999998888887777766554 3444555544
No 175
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.65 E-value=1.6e+03 Score=28.50 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=17.6
Q ss_pred HhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHh
Q 001435 285 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQK 319 (1078)
Q Consensus 285 Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEke 319 (1078)
|..+...+..++..+...|.++..++...+..+.-
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555444433
No 176
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.49 E-value=9.7e+02 Score=26.02 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001435 560 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1078)
Q Consensus 560 Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~d~ 608 (1078)
.-...++.|+.-++.|..-+..|+..|.. =-..|-.+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3344455666777777654
No 177
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=22.82 E-value=1.5e+03 Score=27.83 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=77.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----HHHHHHhcchhHHhhhhHHHhhhhhHHH--
Q 001435 132 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 205 (1078)
Q Consensus 132 KAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAe----a~~AEa~Rk~s~aerkL~eVEaRE~~Lr-- 205 (1078)
..|+.||.+.|-++.++.+-.++-...|.+|-.|...+=. .++. |-.|=++.-+..+......+-++=|+|+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777777888887777655432 1111 1112121122222222222222222222
Q ss_pred -----------------HHHhHhhhhhhhHHHHHHHHHhchH----HHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001435 206 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILS 259 (1078)
Q Consensus 206 -----------------RerlSf~~E~ea~E~~~~~qRe~L~----eweKkLqe~eerL~e~q~~LNqREe~~~e 259 (1078)
++.-+...|..+..+++.+..+.+. -|.|.-...=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555667777777777666665 48888777788999999999988887654
No 178
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.48 E-value=1.7e+03 Score=29.48 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001435 514 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (1078)
Q Consensus 514 eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~ 593 (1078)
|..--.+.-|+|--|.++|-|..+...+|-.+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q--- 514 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQ--- 514 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3333444556677777777777777777777777776654444443 345566666778888888888887544
Q ss_pred HHHHHHHHHHhhhhhHhhhhhhH
Q 001435 594 FTKIQQERADFLLGIEMQKRDLE 616 (1078)
Q Consensus 594 ~eKiq~Erad~l~d~EmqkreLE 616 (1078)
|.-...|...++++|.++-|+-|
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHH
Confidence 34445677777778777766654
No 179
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.33 E-value=2e+03 Score=29.20 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001435 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1078)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerkL~ 195 (1078)
|-.+.+--..-++-++-.|.+|..+.++.++.++.-+.+.. ++-.-.+-|.+...-.-.|.+...+++++-.
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e--------qLr~elaql~a~r~q~eka~~~~ee~e~~~l 420 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE--------QLRNELAQLLASRTQLEKAQVLVEEAENKAL 420 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhhHHHHHHhHhhhh-------hhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH
Q 001435 196 EVVAREDDLSRRIASFKAD-------CEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 268 (1078)
Q Consensus 196 eVEaRE~~LrRerlSf~~E-------~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kE 268 (1078)
-.+.|=..|..-.--|..+ ..-.-+.+.-++++.-+-++...+....|.+.++-...=+-...+....+...+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhH--HHHHHHHh----------hhhhHHHH
Q 001435 269 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLA----------SKESNEIQ 336 (1078)
Q Consensus 269 keLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeL--l~leEKL~----------aRE~~EIQ 336 (1078)
.+|..+...++.--.++..-...-+..++.|...++.-|..-..+-.+|.++ +.++..-+ +-|-...|
T Consensus 501 ~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ 580 (980)
T KOG0980|consen 501 QELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQ 580 (980)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHH
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHH
Q 001435 337 KIIANHESALRVKQSEFEAELAI 359 (1078)
Q Consensus 337 KLldeh~a~L~~Kk~eFElElE~ 359 (1078)
-..+....+|+.-.-.-+-.|..
T Consensus 581 ~~~~~~~~il~~~~~~~~q~lq~ 603 (980)
T KOG0980|consen 581 LQDDLNDPILDGSLASGIQALQN 603 (980)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
No 180
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.85 E-value=8.9e+02 Score=24.96 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001435 477 KSEAGELSVLEIKLKEELDVVRAQKLEL 504 (1078)
Q Consensus 477 eeER~E~~~LQ~eLKeEId~~R~Qke~L 504 (1078)
..+..++......+..++...+.....+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444333333333
No 181
>PF14992 TMCO5: TMCO5 family
Probab=21.41 E-value=1.3e+03 Score=26.75 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001435 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1078)
Q Consensus 353 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1078)
++-|+....-.+++. +..-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.++..+
T Consensus 37 Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 37 LEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 334444444444433 2222223667777766665544444333333344466666666555553
No 182
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.38 E-value=1.6e+03 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=17.3
Q ss_pred hhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHH
Q 001435 249 LLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1078)
Q Consensus 249 ~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~ 282 (1078)
+...++.-+..+...+..+|++-+++.++.....
T Consensus 186 l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K 219 (489)
T PF05262_consen 186 LREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAK 219 (489)
T ss_pred HhhccccChhhhhhhHHHHHHHhHHHHHHHHHHH
Confidence 3444444455555555556666555555444333
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.38 E-value=6.5e+02 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001435 241 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1078)
Q Consensus 241 erL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl 292 (1078)
++..+.+..+++++..+++-.....++..+|+.++.+++.....+...++++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666667777777777777777777777766655555555544
No 184
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.30 E-value=1.9e+03 Score=28.65 Aligned_cols=164 Identities=17% Similarity=0.214 Sum_probs=94.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhh--------------hhhHHHHHHhHHHHHH
Q 001435 70 LILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT--------------LGVEKECIASLEKAVH 135 (1078)
Q Consensus 70 LLiEkKEwtSK~eelkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKA--------------LgvEKqCVadLEKAL~ 135 (1078)
|+-.+..|.-+++++..+++-. +-+ -..|..+.-.-..++.. ......|...|+.=|.
T Consensus 528 LLsgkadLE~fieE~s~tLdwI---ls~-----~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE 599 (769)
T PF05911_consen 528 LLSGKADLERFIEEFSLTLDWI---LSN-----CFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELE 599 (769)
T ss_pred HhcchhHHHHHHHHHHHHHHHH---HHc-----cchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHH
Confidence 5666777777788877777643 222 22222211111111111 1233444445555555
Q ss_pred HHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhh-------hHHHhhhhhHHHHHH
Q 001435 136 EIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK-------LQEVVAREDDLSRRI 208 (1078)
Q Consensus 136 emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aAea~~AEa~Rk~s~aerk-------L~eVEaRE~~LrRer 208 (1078)
.|..+- -.-+..|+.+..-+....-++.++|.+|....+.++-++-..+.++-- +..++.|=..+.-+.
T Consensus 600 ~le~eK----~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 600 KLESEK----EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 554443 334556667777777777777777777777777777666666666553 334455555556666
Q ss_pred hHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 001435 209 ASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLD 245 (1078)
Q Consensus 209 lSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e 245 (1078)
.....-..+++.+|...|..-.+-.-+++..++.|.-
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 6666666777777777777666666666666555543
No 185
>PRK11281 hypothetical protein; Provisional
Probab=21.26 E-value=2.2e+03 Score=29.30 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=62.6
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH-----------HhhcHHHHHHHHh
Q 001435 218 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALN 286 (1078)
Q Consensus 218 ~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe-----------~k~kie~~~~~Lk 286 (1078)
.|..+..-...|.+|+..|.+....|...+...-..-..+.++.+.+......|.. .+..+..+...|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 55555656666777777777776666666655555555555666666555555532 2333344444444
Q ss_pred hhhhhhhHhHHHhhhh----HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001435 287 EEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1078)
Q Consensus 287 ~ke~dl~~r~~~l~~r----Ee~~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLl 339 (1078)
-+-+-...-+.+-+.+ -...+-....+..-|..+..||+.++.|=..+-++-+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222221111 1122333444555566666666666665555555544
No 186
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.60 E-value=1.4e+03 Score=27.12 Aligned_cols=135 Identities=15% Similarity=0.240 Sum_probs=77.8
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhh
Q 001435 333 NEIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 409 (1078)
Q Consensus 333 ~EIQKLldeh~a~L~~Kk~eFElEl---E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd 409 (1078)
.|+.+++-.-++...+.-.+-=.=+ .+-++++..-+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=..
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444434443333 3445667777777777788888888888899999999999998888776555
Q ss_pred HHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 001435 410 LVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 470 (1078)
Q Consensus 410 l~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q--~~qi~ee~ 470 (1078)
...+++.++++=+. .-..+......|-.=.++|...|.+++.=-+++.+. +-+|.++.
T Consensus 278 ~~~~ls~~~~~y~~---~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 278 AQDELSEVQEKYKQ---ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55555555544433 333333334444444445555555555444444332 23444443
No 187
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.56 E-value=5.6e+02 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001435 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1078)
Q Consensus 488 ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1078)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888899999988888875
No 188
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.43 E-value=3.4e+02 Score=25.09 Aligned_cols=53 Identities=9% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001435 124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1078)
Q Consensus 124 KqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~Kl~aA 176 (1078)
+.++..+.+.+..|+.+...+.--...-+..++.+.++++.|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67889999999999999999998888899999999999888887776555444
No 189
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.07 E-value=6.6e+02 Score=31.26 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHH--HHhhhhHHHHhhhhHHHHh------hhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001435 381 DLGQREESLLEREHDLEVQSRAL--VDKEKDLVERSHLLEEKEN------KLIAFEKEADLKKSLLQKEKEEVNIIKSDL 452 (1078)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~l--kEKEkdl~~Ksk~LKEkEk------sL~aeEK~le~ek~~L~~ekEel~~lK~dl 452 (1078)
...+.+..+.++++..+.....| ++.=+.+..+++.|+. + .|....+++..=+..+.++++.+..++.++
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~--~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK--KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHHHhh
Q 001435 453 QKSLSSLDEKKKQVNCAKDK 472 (1078)
Q Consensus 453 EK~~a~~e~q~~qi~ee~E~ 472 (1078)
+..+..+..+...+..+-++
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred HHhHHHHHHHHHHHHhccHh
No 190
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=1.3e+03 Score=26.26 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=33.3
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001435 258 LSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1078)
Q Consensus 258 ~e~~~~l~~kEkeLEe~k~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~Le~KEkeLl~leEKL~ 328 (1078)
++..+.|.+...+++.+...+..+...+.+--.=+..+-+....-|.++-..++.|+.-+..+..+.+++.
T Consensus 47 ~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555554444433332222222222223333344555555666666666655555544
No 191
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=20.00 E-value=2.5e+03 Score=29.43 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=87.9
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q 001435 603 DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 682 (1078)
Q Consensus 603 d~l~d~EmqkreLE~~iq~R~EE~E~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~ 682 (1078)
|-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++-++..|..++.-++..+..
T Consensus 992 ~~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~ 1059 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNL 1059 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 33556666777777777654 344444555566666666666554 556788999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHhHHhHHhHhhhh--hcccchh
Q 001435 683 RDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHS 751 (1078)
Q Consensus 683 le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ckncg~~~~~~vLsdlq--~s~~~~~ 751 (1078)
+-++..++...|.-+...=.+ .+-+......|..|+..---=.+|+++|...--.-.++|| ...|+.-
T Consensus 1060 ~lg~~ke~e~~i~~~k~eL~~-~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1060 LLGEMKQYESQIKKLKQELRE-KDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876543221 1222333344555554444445677777777654445565 5666644
Done!