Query 001435
Match_columns 1078
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 16:39:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001435.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_736-740//hhsearch_pdb/001435hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 62.2 10.2 13 21-33 324-336 (1184)
2 3vkg_A Dynein heavy chain, cyt 1.0 1 1 30.2 27.1 31 716-747 2392-2422(3245)
3 3na7_A HP0958; flagellar bioge 1.0 1 1 27.9 21.9 70 476-546 3-72 (256)
4 1c1g_A Tropomyosin; contractIl 1.0 1 1 26.7 39.9 280 400-714 1-280 (284)
5 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 23.1 19.6 19 20-38 297-319 (1080)
6 2qag_B Septin-6, protein NEDD5 1.0 1 1 17.4 0.0 18 797-814 47-64 (427)
7 2oka_A Hypothetical protein; P 1.0 1 1 16.7 -2.3 47 3-49 34-82 (104)
8 2p0g_A Selenoprotein W-related 1.0 1 1 16.6 -3.6 42 3-44 32-75 (105)
9 3oja_A Leucine-rich immune mol 1.0 1 1 16.5 15.5 117 430-546 357-482 (487)
10 2fa8_A Hypothetical protein AT 1.0 1 1 16.1 -3.2 47 3-49 36-84 (105)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=62.15 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.6
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 9992899999998
Q 001435 21 PLSDESIWKRLKE 33 (1078)
Q Consensus 21 ~~~d~~iWkr~~e 33 (1078)
+..|...|..++.
T Consensus 324 ~~~d~~~f~~~~~ 336 (1184)
T 1i84_S 324 AQQDDEMFQETLE 336 (1184)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9876999999999
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=30.20 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999842112468677677584642103
Q 001435 716 EEIQAESERLKKLEDLKIAVDYMAVSEMQRSR 747 (1078)
Q Consensus 716 e~f~~~vEklK~ckncg~~~~~~vLsdlq~s~ 747 (1078)
..|-..-+.++.+-.-|-++ .|+++||.+.+
T Consensus 2392 ~~I~~~R~~YrpvA~r~s~L-yF~i~dL~~i~ 2422 (3245)
T 3vkg_A 2392 QEISEVSALYNPMALSCSRV-YFAMEELSQFH 2422 (3245)
T ss_dssp HHHHHHHHHSHHHHHHHHHH-HHHHTGGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC
T ss_conf 99999999869999999899-99999973078
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=27.87 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26644567889998899999999999986786578899999779998663898999999998999989999
Q 001435 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 546 (1078)
Q Consensus 476 teeER~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~l 546 (1078)
|.+.=.-++.||. +-.+|+.++++...|-++.++|..+...+....+.+...-..+.++...+..+=..+
T Consensus 3 m~~~L~~L~~LQ~-lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 3 SNTHLKQLIEISH-LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999-999999999999875899999999999999999999999999999999999789999
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=26.73 Aligned_cols=280 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88988766669998665499986668889975788888787799999879889875542699988878888546532664
Q 001435 400 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSE 479 (1078)
Q Consensus 400 ~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeE 479 (1078)
++.|+.|=.-+......+...=..+...-..+ ...+..-...+..+...+......+..-...+......+.-...+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAA---EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKK 77 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93789999998876888999999999999999---988988899999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45678899988999999999999867865788999997799986638989999999989999899998764536664599
Q 001435 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (1078)
Q Consensus 480 R~E~~~LQ~eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 559 (1078)
...+-.-...++..|..+......+..+...+.......+..++.+......+......+..+...+..-+..-...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (284)
T 1c1g_A 78 ATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98779889999999998898899889889999999999998888899999988877751066799999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999975345565628999886454556687899888997655567633103899999899987679999999999
Q 001435 560 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEE 639 (1078)
Q Consensus 560 Ek~~~r~~~krelE~L~~ekEsF~~~MehErs~~~eKiq~Erad~l~diElqkreLE~~iq~R~EE~E~~L~EREk~FEe 639 (1078)
-....... ...+..+......+...+. .+.-+...+...+..-..++ .
T Consensus 158 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~------------~ 205 (284)
T 1c1g_A 158 ADRKYEEV-ARKLVIIESDLERAEERAE-------------------LSEGKCAELEEEIKTVTNNL------------K 205 (284)
T ss_dssp HHHHHHHH-THHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH------------H
T ss_conf 99889999-9889988888998999898-------------------78879999999999999999------------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999895532458999999999799999976799887644464446879998750999999999899999998984
Q 001435 640 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHAD 714 (1078)
Q Consensus 640 ek~~EL~~IN~lkE~a~kElEev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~l~~E 714 (1078)
.....+..+......+...+..+.-++..+......+......+......+...+..+.....++..+.+.+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
T 1c1g_A 206 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999758778889999999999999888989988999998899999999999999999998899999999999997
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=23.10 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=10.4
Q ss_pred CCCCCHHHHHHHHH----CCCCH
Q ss_conf 99992899999998----16893
Q 001435 20 SPLSDESIWKRLKE----AGLDE 38 (1078)
Q Consensus 20 ~~~~d~~iWkr~~e----aG~De 38 (1078)
.+..|...|..++. .||..
T Consensus 297 ~~~dD~~~f~~~~~A~~~lg~~~ 319 (1080)
T 2dfs_A 297 DGIDDAKEMVNTRQACTLLGISD 319 (1080)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 88548999999999999869999
No 6
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=17.38 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=9.3
Q ss_pred CCCCCCCCCHHHHHHHHH
Q ss_conf 668888762169998799
Q 001435 797 SASPPSLARFSWIKRFAD 814 (1078)
Q Consensus 797 ~~SP~s~~~~SWlrKCTs 814 (1078)
.+-|+.+|.-++|+-.+.
T Consensus 47 LvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EECSTTSSSHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHC
T ss_conf 999999999999999957
No 7
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=1.00 E-value=1 Score=16.70 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHCCC-CHHHHHHHCHHHH
Q ss_conf 9999862116898-434699992899999998168-9377832069999
Q 001435 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAAL 49 (1078)
Q Consensus 3 ~p~~~~l~~~~g~-rv~~~~~~d~~iWkr~~eaG~-De~s~~rkD~~aL 49 (1078)
|..+++++..||+ ++..-.+.+.-||.|..+-|| |...++.+=+.++
T Consensus 34 ~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i 82 (104)
T 2oka_A 34 ADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRI 82 (104)
T ss_dssp TTTCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 8642239878379966999989999899715899899899999999875
No 8
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=16.57 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHCCC-CHHHHHHH
Q ss_conf 9999862116898-434699992899999998168-93778320
Q 001435 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRR 44 (1078)
Q Consensus 3 ~p~~~~l~~~~g~-rv~~~~~~d~~iWkr~~eaG~-De~s~~rk 44 (1078)
|..+++++..||+ ++..--+.+.-||.|..+-|| |...++.+
T Consensus 32 ~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~ 75 (105)
T 2p0g_A 32 SEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQR 75 (105)
T ss_dssp TTTEEEEEEEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHH
T ss_pred CCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCCHHHHHHH
T ss_conf 86532398783799669999899998997258998998999999
No 9
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=16.50 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7578888878779999987988987554269998887888854---------6532664456788999889999999999
Q 001435 430 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDK---------LEAMKSEAGELSVLEIKLKEELDVVRAQ 500 (1078)
Q Consensus 430 ~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~E~---------LkiteeER~E~~~LQ~eLKeEId~~R~Q 500 (1078)
....++.++...+.++...-..+++..++......+.....+. +..+..-..-+-.+..++-.|++..+..
T Consensus 357 ~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (487)
T 3oja_A 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99988899988899999999988888764112687750102100022135728999999999999889999875030133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986786578899999779998663898999999998999989999
Q 001435 501 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 546 (1078)
Q Consensus 501 ke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~l 546 (1078)
......+.+.|+.++++-+++-+.+|..=++..-...+...++..+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 5554347788887765455311044445674543799999999988
No 10
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=1.00 E-value=1 Score=16.11 Aligned_cols=47 Identities=19% Similarity=0.525 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHCCC-CHHHHHHHCHHHH
Q ss_conf 9999862116898-434699992899999998168-9377832069999
Q 001435 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAAL 49 (1078)
Q Consensus 3 ~p~~~~l~~~~g~-rv~~~~~~d~~iWkr~~eaG~-De~s~~rkD~~aL 49 (1078)
|+.++.++..||+ ++..--+.+.-||.|..+-|| |...++.+=+.++
T Consensus 36 ~~~l~~V~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~elkq~Vr~~i 84 (105)
T 2fa8_A 36 ASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 84 (105)
T ss_dssp GGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 8653169877489967999989999898615799999899999999985
Done!