Query 001435
Match_columns 1078
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 13730
Date Tue Mar 26 16:45:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001435.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_736-740//hhsearch_scop/001435hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cosa1 a.5.2.1 (A:8-48) Serin 10.3 28 0.002 9.4 3.8 32 25-56 3-41 (41)
2 d1aopa2 d.58.36.1 (A:346-425) 4.2 79 0.0057 6.1 -0.2 10 27-36 66-75 (80)
3 d1b77a1 d.131.1.2 (A:1-110) gp 4.1 89 0.0065 5.7 1.1 26 844-871 82-107 (110)
4 d1l5ja3 c.83.1.1 (A:373-862) A 3.9 44 0.0032 7.9 -1.7 11 805-815 84-94 (490)
5 d2b3ya2 c.83.1.1 (A:2-630) Iro 3.6 43 0.0031 8.0 -2.0 24 805-828 152-177 (629)
6 d2fa8a1 c.47.1.23 (A:4-89) Hyp 3.1 30 0.0022 9.2 -3.2 23 22-44 51-74 (86)
7 d1zu2a1 a.118.8.1 (A:1-145) Mi 3.1 1.3E+02 0.0093 4.6 5.5 34 49-82 19-52 (145)
8 d1xria_ c.45.1.1 (A:) Putative 2.8 1.4E+02 0.01 4.3 2.3 33 1-36 2-34 (151)
9 d1fiua_ c.52.1.10 (A:) Restric 2.7 1.5E+02 0.011 4.2 2.1 24 98-121 109-132 (286)
10 d2htja1 a.4.5.73 (A:1-73) P fi 2.7 1.5E+02 0.011 4.1 2.2 29 715-744 2-30 (73)
No 1
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.26 E-value=28 Score=9.37 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCCHHHHHH-------HCHHHHHHHHHHH
Q ss_conf 8999999981689377832-------0699999999988
Q 001435 25 ESIWKRLKEAGLDEVSIKR-------RDKAALIAYIAKL 56 (1078)
Q Consensus 25 ~~iWkr~~eaG~De~s~~r-------kD~~aLia~IskL 56 (1078)
-.+.+-+.-||||++-.-| |.-+|.|+||||.
T Consensus 3 RQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 3 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 889999999079799999999982762299999998629
No 2
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=4.22 E-value=79 Score=6.12 Aligned_cols=10 Identities=60% Similarity=0.594 Sum_probs=3.6
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998168
Q 001435 27 IWKRLKEAGL 36 (1078)
Q Consensus 27 iWkr~~eaG~ 36 (1078)
||.+|++.||
T Consensus 66 i~~~L~~~Gl 75 (80)
T d1aopa2 66 IEKIAKESGL 75 (80)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHCCC
T ss_conf 9999998489
No 3
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=4.12 E-value=89 Score=5.72 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCH
Q ss_conf 2446785432135998031037995100
Q 001435 844 INSRKRQPVRYSFGEPKVILEVPSENEV 871 (1078)
Q Consensus 844 ~~~~k~q~irya~gepkvileVPs~~~~ 871 (1078)
.+-+.+..+.|-|.+|-+| |+|+.+|
T Consensus 82 ~i~~~~s~~~y~~adpsiI--~~P~K~i 107 (110)
T d1b77a1 82 KIADTRSTVYWPAADKSTI--VFPNKPI 107 (110)
T ss_dssp EEECSSEEEEECCBCGGGS--CCCSSCC
T ss_pred EECCCCCEEEEECCCCCCE--ECCCCCC
T ss_conf 9638972799975993405--4799768
No 4
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.88 E-value=44 Score=7.90 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=5.3
Q ss_pred CHHHHHHHHHH
Q ss_conf 21699987998
Q 001435 805 RFSWIKRFADL 815 (1078)
Q Consensus 805 ~~SWlrKCTsk 815 (1078)
....+|.++.+
T Consensus 84 ~~~~~r~fa~~ 94 (490)
T d1l5ja3 84 THHTLPDFIMN 94 (490)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 5
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.62 E-value=43 Score=7.99 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHH--HCCCCCCCCCCC
Q ss_conf 216999879987--234788866567
Q 001435 805 RFSWIKRFADLV--FKHSGENSVEND 828 (1078)
Q Consensus 805 ~~SWlrKCTskI--Fk~SP~Kk~e~~ 828 (1078)
++.+|+-|+... |.+.|--.-+-|
T Consensus 152 r~~fl~w~~~~~~~~~~~pPg~GI~H 177 (629)
T d2b3ya2 152 RFEFLKWGSQAFHNMRIIPPGSGIIH 177 (629)
T ss_dssp HHHHHHHHHHHSTTEEEECTTSCCHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 88889999988634622135542566
No 6
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.11 E-value=30 Score=9.16 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHCCC-CHHHHHHH
Q ss_conf 992899999998168-93778320
Q 001435 22 LSDESIWKRLKEAGL-DEVSIKRR 44 (1078)
Q Consensus 22 ~~d~~iWkr~~eaG~-De~s~~rk 44 (1078)
+.+.-||.|..+-|| |...++.+
T Consensus 51 v~g~li~srk~~ggFPd~kelkq~ 74 (86)
T d2fa8a1 51 VDGTIIWERKRDGGFPGPKELKQR 74 (86)
T ss_dssp ETTEEEEEHHHHTSCCCHHHHHHH
T ss_pred ECCEEEEEECCCCCCCCHHHHHHH
T ss_conf 899999996357989988999999
No 7
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.07 E-value=1.3e+02 Score=4.59 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999998887786543100023200213432499
Q 001435 49 LIAYIAKLETEIFEHQHHMGLLILEKKELASKYE 82 (1078)
Q Consensus 49 Lia~IskLE~ElydYQynMGLLLiEkKEwtSK~e 82 (1078)
...++..+...-.++.+|+|..+.....|....+
T Consensus 19 ~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e 52 (145)
T d1zu2a1 19 DAENTYKSNPLDADNLTRWGGVLLELSQFHSISD 52 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999986188310899999999987621333367
No 8
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.81 E-value=1.4e+02 Score=4.26 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 999999862116898434699992899999998168
Q 001435 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (1078)
Q Consensus 1 ~~~p~~~~l~~~~g~rv~~~~~~d~~iWkr~~eaG~ 36 (1078)
|.||+-++ .|.+| +.||+....+.|..++..|+
T Consensus 2 ~~pp~nF~-~V~~~--lyRs~~~t~~~~~~L~~lgI 34 (151)
T d1xria_ 2 LIPPLNFS-MVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp BCCCTTCE-EEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CCCCCCCC-EECCC--CEECCCCCHHHHHHHHHCCC
T ss_conf 87971124-33589--56659989877999998799
No 9
>d1fiua_ c.52.1.10 (A:) Restriction endonuclease NgoIV {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.74 E-value=1.5e+02 Score=4.17 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 443334698999883686666353
Q 001435 98 DRASHLSAIAEARKREESLKKTLG 121 (1078)
Q Consensus 98 EqaAhl~ALsEaeKREEnLkKALg 121 (1078)
+|-+||++|..+-|.---|.-|||
T Consensus 109 eqY~HL~~L~~~~k~~pel~a~LG 132 (286)
T d1fiua_ 109 QQYAHLTALAKAAEENPELAAALG 132 (286)
T ss_dssp GGGTHHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHC
T ss_conf 368789999999876978998747
No 10
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=2.71 E-value=1.5e+02 Score=4.12 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999842112468677677584642
Q 001435 715 REEIQAESERLKKLEDLKIAVDYMAVSEMQ 744 (1078)
Q Consensus 715 Re~f~~~vEklK~ckncg~~~~~~vLsdlq 744 (1078)
+++|+.|+-.+.+| .--++.+.+.+|+.|
T Consensus 2 kn~Il~fl~~~~~~-~T~EIAea~gvsaYQ 30 (73)
T d2htja1 2 KNEILEFLNRHNGG-KTAEIAEALAVTDYQ 30 (73)
T ss_dssp HHHHHHHHHHSCCC-CHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHHCCCC-CHHHHHHHHHHHHHH
T ss_conf 20899998844896-378999996338999
Done!