BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001438
(1077 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/1061 (33%), Positives = 589/1061 (55%), Gaps = 31/1061 (2%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASH-- 98
VS+ +F +A + D + M +G++ A +HGV++P+ + FG + + K +++
Sbjct: 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMS 92
Query: 99 -------------KVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSML 145
++ Y+ + + +L ++I+VS W RQ K+R + +++
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 146 NQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQIS 205
NQ+I FD GE+ + +T D+ + + + +K+G F ++ F GGFIIGF R W+++
Sbjct: 153 NQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 206 LVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVK 265
LV L+I P++ L+ G++A + + +Y KAG +AEEV+ +RTV AF G+ K ++
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 266 VYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTM 325
Y L + + G+ T
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 326 LNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFK 385
+V+I S+GQA+P+I AF A+ AAY +F++I+ + SK+G K D + G++EFK
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFK 391
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445
++ F YPSR +V I L + +G+ VALVG SG GKST + L++R Y+PL G + +DG
Sbjct: 392 NIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451
Query: 446 NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505
+I+ +++++LR+ IG+V+QEP LFATTI ENI YG++D TM+EI +A K + A FI
Sbjct: 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565
LP +F+T VGERG QLSGGQKQRIAI+RA+V+NP ILLLDEATSALD ESE VQ ALD+
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 566 VMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXX 625
GRTT+V+AHRLST+RNADVIA G IV+ G+H+EL+ + ++
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEI 631
Query: 626 XXXXXXCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAAD---ATEPATAKHV 682
C + ++ S + SG+ RS ++S+ D +T+ A + V
Sbjct: 632 ELGNEACKSKDEIDNLDMSSKDSGSSL---IRRRSTRKSICGPHDQDRKLSTKEALDEDV 688
Query: 683 SAIKLYSMVR---PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW--DTTQREV 737
+ +++ +W Y V G CAII G P F++ S+ +V + + TQR+
Sbjct: 689 PPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK-VVGVFTNGGPPETQRQN 747
Query: 738 KKI-TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796
+ ++LF +I+ I ++ +FG GE LT R+R +F ++L ++ WFD+ N++
Sbjct: 748 SNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTT 807
Query: 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856
L +RL +DA ++ R ++ QN + +I+ I W++TL+++A P+I
Sbjct: 808 GALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIA 867
Query: 857 HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916
+ E G K + +A EA+ N RTV + E K +Y++ L P + +
Sbjct: 868 GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927
Query: 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGET 976
+ + GI + +Q ++ SY A +G+ L+ ++L +F++V+ F ++ A+A+G+
Sbjct: 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQV 987
Query: 977 LALVPDLLKGNQMAASVFEVLDRKTQV--IGDIGEELTNVEGTIELRGVHFSYPSRPEVV 1034
+ PD K A+ + ++++ ++ G + +EG ++ GV F+YP+RP +
Sbjct: 988 SSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP 1047
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ + +L+V+ G+++ALVG SG GKSTV+ L+ RFYDP AG
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Score = 343 bits (880), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/552 (35%), Positives = 304/552 (55%), Gaps = 4/552 (0%)
Query: 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119
+G A ++G P F + F K++ + P+T +SL F+ L + + +
Sbjct: 709 VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP-PETQRQNSNLFSLLFLILGIISFITFF 767
Query: 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSE 178
++ + GE ++R +SML QD+S FD + +TG + + + +D V+ A
Sbjct: 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827
Query: 179 KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV 238
++ I+ G II WQ++L+ L+IVP+IA+AG + + G + +K
Sbjct: 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELE 887
Query: 239 KAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXX 298
+G+IA E I N RTV + E K +Y ++L
Sbjct: 888 GSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYF 947
Query: 299 XXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358
+ + +V +++GQ + + +A +A I +
Sbjct: 948 SYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007
Query: 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGG 418
IE+ + S G K + L G+++F V F YP+RP + + L++ G+ +ALVG
Sbjct: 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 419 SGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478
SG GKSTV+ L+ERFY+P++G + LDG IK L+++WLR Q+G+V+QEP LF +I ENI
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 479 LYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
YG + + EEI RAAK + FI +LP+++ T+VG++G QLSGGQKQRIAI+RA+V
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
+ P ILLLDEATSALD ESE VQEALD+ GRT +V+AHRLSTI+NAD+I V+Q K+
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247
Query: 597 VKTGSHEELISN 608
+ G+H++L++
Sbjct: 1248 KEHGTHQQLLAQ 1259
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/1061 (33%), Positives = 588/1061 (55%), Gaps = 31/1061 (2%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASH-- 98
VS+ +F +A + D + M +G++ A +HGV++P+ + FG + + K +++
Sbjct: 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMS 92
Query: 99 -------------KVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSML 145
++ Y+ + + +L ++I+VS W RQ K+R + +++
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 146 NQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQIS 205
NQ+I FD GE+ + +T D+ + + + +K+G F ++ F GGFIIGF R W+++
Sbjct: 153 NQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 206 LVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVK 265
LV L+I P++ L+ G++A + + +Y KAG +AEEV+ +RTV AF G+ K ++
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 266 VYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTM 325
Y L + + G+ T
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 326 LNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFK 385
+V+I S+GQA+P+I AF A+ AAY +F++I+ + SK+G K D + G++EFK
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFK 391
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445
++ F YPSR +V I L + +G+ VALVG SG GKST + L++R Y+PL G + +DG
Sbjct: 392 NIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451
Query: 446 NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505
+I+ +++++LR+ IG+V+QEP LFATTI ENI YG++D TM+EI +A K + A FI
Sbjct: 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565
LP +F+T VGERG QLSGGQKQRIAI+RA+V+NP ILLLDEATSALD ESE VQ ALD+
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 566 VMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXX 625
GRTT+V+AHRLST+RNADVIA G IV+ G+H+EL+ + ++
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEI 631
Query: 626 XXXXXXCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAAD---ATEPATAKHV 682
C + ++ S + SG+ RS ++S+ D +T+ A + V
Sbjct: 632 ELGNEACKSKDEIDNLDMSSKDSGSSL---IRRRSTRKSICGPHDQDRKLSTKEALDEDV 688
Query: 683 SAIKLYSMVR---PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW--DTTQREV 737
+ +++ +W Y V G CAII G P F++ S+ +V + + TQR+
Sbjct: 689 PPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK-VVGVFTNGGPPETQRQN 747
Query: 738 KKI-TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796
+ ++LF +I+ I ++ +FG GE LT R+R +F ++L ++ WFD+ N++
Sbjct: 748 SNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTT 807
Query: 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856
L +RL +DA ++ R ++ QN + +I+ I W++TL+++A P+I
Sbjct: 808 GALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIA 867
Query: 857 HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916
+ E G K + +A EA+ N RTV + E K +Y++ L P + +
Sbjct: 868 GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927
Query: 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGET 976
+ + GI + +Q ++ SY +G+ L+ ++L +F++V+ F ++ A+A+G+
Sbjct: 928 MKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQV 987
Query: 977 LALVPDLLKGNQMAASVFEVLDRKTQV--IGDIGEELTNVEGTIELRGVHFSYPSRPEVV 1034
+ PD K A+ + ++++ ++ G + +EG ++ GV F+YP+RP +
Sbjct: 988 SSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP 1047
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ + +L+V+ G+++ALVG SG GKSTV+ L+ RFYDP AG
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Score = 343 bits (880), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/552 (35%), Positives = 304/552 (55%), Gaps = 4/552 (0%)
Query: 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119
+G A ++G P F + F K++ + P+T +SL F+ L + + +
Sbjct: 709 VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP-PETQRQNSNLFSLLFLILGIISFITFF 767
Query: 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSE 178
++ + GE ++R +SML QD+S FD + +TG + + + +D V+ A
Sbjct: 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827
Query: 179 KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV 238
++ I+ G II WQ++L+ L+IVP+IA+AG + + G + +K
Sbjct: 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELE 887
Query: 239 KAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXX 298
+G+IA E I N RTV + E K +Y ++L
Sbjct: 888 GSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYF 947
Query: 299 XXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358
+ + +V +++GQ + + +A +A I +
Sbjct: 948 SYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007
Query: 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGG 418
IE+ + S G K + L G+++F V F YP+RP + + L++ G+ +ALVG
Sbjct: 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 419 SGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478
SG GKSTV+ L+ERFY+P++G + LDG IK L+++WLR Q+G+V+QEP LF +I ENI
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 479 LYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
YG + + EEI RAAK + FI +LP+++ T+VG++G QLSGGQKQRIAI+RA+V
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
+ P ILLLDEATSALD ESE VQEALD+ GRT +V+AHRLSTI+NAD+I V+Q K+
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247
Query: 597 VKTGSHEELISN 608
+ G+H++L++
Sbjct: 1248 KEHGTHQQLLAQ 1259
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 337/1087 (31%), Positives = 539/1087 (49%), Gaps = 62/1087 (5%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKL----------INIIGLAY 90
VS+ +L+ + + +L+ +G++ A + G +P+ I GK+ IN G +
Sbjct: 60 VSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTF 119
Query: 91 L-----FPKTA-SHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSM 144
L + KT H V + ++V + + I V+C++Y E+ ++R +++S+
Sbjct: 120 LPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSI 179
Query: 145 LNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204
L Q+IS FDT S G + + + ++ V++ +K+G Y+S+F+ GFI+ F WQ+
Sbjct: 180 LRQEISWFDTNHS-GTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQL 238
Query: 205 SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAV 264
+LV L++ P+ AL G A R Y KAG++ EE I ++RTV + G +
Sbjct: 239 TLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYEL 298
Query: 265 KVYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTT 324
+ Y A+ +M H N G+ TT
Sbjct: 299 ERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTT 358
Query: 325 MLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEF 384
+V++ ++LG A P + A+ AA I+E+++R + +SSK GRK K+ G I
Sbjct: 359 FSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITV 418
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
++V F YPSRPDV I L + AG+ VALVG SG GKST+ISL+ R+Y+ L G+I +D
Sbjct: 419 ENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITID 478
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFIS 504
G +++ ++L++LR+ + +V+QEPALF TI ENI GK+ T EE+ A K++ A FI
Sbjct: 479 GVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIK 538
Query: 505 NLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
LP + T VG+RG QLSGGQKQRIAI+RA+V+NP ILLLDEATSALDAESE VQ+ALD
Sbjct: 539 TLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD 598
Query: 565 RVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXX 624
+ GRTT+++AHRLSTIRNAD+I + ++V+ G H L++ Y +
Sbjct: 599 KAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDA 658
Query: 625 XXXXXXXCPNMGRPLSIKFSRELSGTRTSF---GASFRS--------------------- 660
KFSRE S R + G S ++
Sbjct: 659 VDSAAEG----------KFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNG 708
Query: 661 ----EKESVLSHGA----ADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQM 712
EKE + A E A+ + ++ RP G A I G
Sbjct: 709 PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIY 768
Query: 713 PLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLR 772
P +++ + + + + + ++F A I + GI E LT
Sbjct: 769 PTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRD 828
Query: 773 VREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASF 832
+R K+F +LS IG+FD N+S +++RL +D LRT + R + +I + A
Sbjct: 829 LRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGI 888
Query: 833 VIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTV 892
+AF W++ L+++A P++ G F G + + + +A EA+ N+RTV
Sbjct: 889 GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTV 948
Query: 893 AAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKE 952
A ED E + +L P K + I G+ YG + ++ A G L+ +
Sbjct: 949 QALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITD 1008
Query: 953 LASFKS--VMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG-DIGE 1009
+ + V++ + ++ +G + P+ K +F +L + +++ +
Sbjct: 1009 PPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG 1068
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
E + G + + V F+YP RPE+ I K + V G+++ALVG SG GKSTV++L+ RF
Sbjct: 1069 EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128
Query: 1070 YDPTAGK 1076
YD G+
Sbjct: 1129 YDTLGGE 1135
Score = 319 bits (818), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 200/570 (35%), Positives = 303/570 (53%), Gaps = 25/570 (4%)
Query: 55 YILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAI 114
+I MS +IG ++ P + +FF +N+ P + ++L F+ L+ A
Sbjct: 755 FIGMSTATIGGFIY----PTYSVFFTSFMNVFAGN---PADFLSQGHFWALMFLVLAAAQ 807
Query: 115 LFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQ 173
S++ E +R R++L+Q I FD+ + ++G++ + + +D+ ++
Sbjct: 808 GICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLR 867
Query: 174 DALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARV 233
A+ + + + + G + F WQ++L+ ++I+P++A + G +
Sbjct: 868 TAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKS 927
Query: 234 RKSYVKAGEIAEEVIGNVRTVQAFAGED--------KAVKVYKEALSNTXXXXXXXXXXX 285
+ +G+IA E I NVRTVQA A ED K +KEA+
Sbjct: 928 ASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCAS 987
Query: 286 XXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAF 345
C + M + I+ +LG A +
Sbjct: 988 SVLYLLNTCAYRMGLALIITDPPTMQPMRV------LRVMYAITISTSTLGFATSYFPEY 1041
Query: 346 IRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCL 405
+A A IF M+ + + + S G K KL G + FK+V F YP RP++ I
Sbjct: 1042 AKATFAGGIIFGMLRKISKIDSLSLAGEK-KKLYGKVIFKNVRFAYPERPEIEILKGLSF 1100
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
+ G+ +ALVG SG GKSTV++L+ERFY+ L GEI +DG+ IK L+ + R QI +V+Q
Sbjct: 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQ 1160
Query: 466 EPALFATTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
EP LF +I ENI+YG D + TM ++ AA+L+ +FI+ LPE FET+VG+RG QLSG
Sbjct: 1161 EPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR 583
GQKQRIAI+RA+V+NP ILLLDEATSALD ESE VQEALDR GRT +V+AHRL+T+
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280
Query: 584 NADVIAVVQGRKIVKTGSHEELISNPNSAY 613
NAD IAVV I++ G+H +L+S + Y
Sbjct: 1281 NADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 139/450 (30%), Positives = 221/450 (49%), Gaps = 45/450 (10%)
Query: 661 EKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYG----VCGTICAIIAGAQMPLFA 716
E +++ S+G T A + V+ + + + R T GT+ A+I GA +PL +
Sbjct: 36 EGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMS 95
Query: 717 L---GVSQALVAYYM--------------DWDTTQREVKKITILFCCAAVITVIVHAIEH 759
+ VSQA + + ++ T E + +++ AA +TV + A
Sbjct: 96 ILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAA-MTVGMWAAGQ 154
Query: 760 LS---FGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816
++ + + E++ R+R + +IL EI WFD N S LA++L + ++ D
Sbjct: 155 ITVTCYLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGD 212
Query: 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876
+ + Q F++AF +W++TLV++A P+ + + + Y
Sbjct: 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYA 272
Query: 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936
KA + E +S+IRTV + LE YS + E K ++G GI +G Q F
Sbjct: 273 KAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFI 332
Query: 937 SYGLALWYG-------SVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQM 989
S+ LA + G S+ G L +F SVM M L LA G LA+ L Q
Sbjct: 333 SFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMAL---GLA-GPQLAV----LGTAQG 384
Query: 990 AAS-VFEVLDRKTQV--IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046
AAS ++EVLDRK + G + ++G I + VHF+YPSRP+V I + NL+V AG
Sbjct: 385 AASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAG 444
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+++ALVG SG GKST++SL+LR+YD GK
Sbjct: 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 348 bits (892), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/546 (38%), Positives = 315/546 (57%), Gaps = 12/546 (2%)
Query: 78 FFGKLINIIGLAYLFPKTA-SHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136
F GK+I++I Y P S + + L + + ++ I V +G+R ++
Sbjct: 41 FLGKIIDVI---YTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRL 97
Query: 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII 196
R + S+L Q+++ FD + TGE+I+ ++SD ++ +++E + + + ++ G +
Sbjct: 98 RTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISM 156
Query: 197 GFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQA 256
F ++ LS+VP +++ +Y L + S +A ++AEE IGNVRTV+A
Sbjct: 157 MFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRA 216
Query: 257 FAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHIS 316
F E ++ Y + + +
Sbjct: 217 FGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHM 276
Query: 317 NGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376
GE + ++ G+S+G + + ++ A ++E++ER+ K G L+
Sbjct: 277 TVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE--PKLPFNEGVILN 334
Query: 377 KLS--GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434
+ S G +EFK+V F YP+RP+V IF F L IP+G + ALVG SGSGKSTV+SL+ R Y
Sbjct: 335 EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394
Query: 435 EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEIT 491
+P SG I LDG++I+ L+ WLR +IG V+QEP LF+ +I ENI YG DD T EEI
Sbjct: 395 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 454
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
R A+++ A++FI N P+ F T VGE+G+ LSGGQKQRIAI+RA++KNP ILLLDEATSAL
Sbjct: 455 RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514
Query: 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
DAE+E VQEALDR+M GRT +V+AHRLSTI+NA+++AV+ KI + G HEEL+S PN
Sbjct: 515 DAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG 574
Query: 612 AYAALV 617
Y L+
Sbjct: 575 IYRKLM 580
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 180/359 (50%), Gaps = 32/359 (8%)
Query: 731 DTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFD 790
D R ++ +F C A I + S G+R+ R+R +FS+IL E+ +FD
Sbjct: 59 DNLTRLCLGLSAVFLCGAAANAIRVYLMQTS----GQRIVNRLRTSLFSSILRQEVAFFD 114
Query: 791 EMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATY 850
+ L +RL SD LL V + + ++ + + F ++ + V++
Sbjct: 115 KTRTGE--LINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVV 172
Query: 851 PLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELV 910
P + + + + + +A LA E + N+RTV AF E +E Y+ ++
Sbjct: 173 PPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVD 232
Query: 911 E----PSKRSFIRGQIAGIF--YGISQFFIFSSYGLALWYGSVLMGK------ELASFKS 958
K +F R AG F G+S I S L+ G +LMG EL+SF
Sbjct: 233 HVMQLARKEAFAR---AGFFGATGLSGNLIVLS---VLYKGGLLMGSAHMTVGELSSF-- 284
Query: 959 VMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELT--NVEG 1016
+M +F V +++G + +L+KG ++E+L+R+ ++ + G L + +G
Sbjct: 285 LMYAFWV----GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQG 340
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+E + VHF+YP+RPEV IF+DF+L + +G ALVG SGSGKSTVLSL+LR YDP +G
Sbjct: 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 345 bits (886), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 207/546 (37%), Positives = 314/546 (57%), Gaps = 12/546 (2%)
Query: 78 FFGKLINIIGLAYLFPKTA-SHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136
F GK+I++I Y P S + + L + + ++ I V +G+R ++
Sbjct: 72 FLGKIIDVI---YTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRL 128
Query: 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII 196
R + S+L Q+++ FD + TGE+I+ ++SD ++ +++E + + + ++ G +
Sbjct: 129 RTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISM 187
Query: 197 GFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQA 256
F ++ LS+VP +++ +Y L + S +A ++AEE IGNVRTV+A
Sbjct: 188 MFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRA 247
Query: 257 FAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHIS 316
F E ++ Y + + +
Sbjct: 248 FGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHM 307
Query: 317 NGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376
GE + ++ G+S+G + + ++ A ++E++ER+ K G L+
Sbjct: 308 TVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP--KLPFNEGVILN 365
Query: 377 KLS--GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434
+ S G +EFK+V F YP+RP+V IF F L IP+G + ALVG SGSGKSTV+SL+ R Y
Sbjct: 366 EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 425
Query: 435 EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEIT 491
+P SG I LDG++I+ L+ WLR +IG V+QEP LF+ +I ENI YG DD T EEI
Sbjct: 426 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 485
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
R A+++ A++FI N P+ F T VGE+G+ LSGGQKQRIAI+RA++KNP ILLLDEATSAL
Sbjct: 486 RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 545
Query: 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
DAE+E VQEALDR+M GRT +V+AH LSTI+NA+++AV+ KI + G HEEL+S PN
Sbjct: 546 DAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG 605
Query: 612 AYAALV 617
Y L+
Sbjct: 606 IYRKLM 611
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 180/359 (50%), Gaps = 32/359 (8%)
Query: 731 DTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFD 790
D R ++ +F C A I + S G+R+ R+R +FS+IL E+ +FD
Sbjct: 90 DNLTRLCLGLSAVFLCGAAANAIRVYLMQTS----GQRIVNRLRTSLFSSILRQEVAFFD 145
Query: 791 EMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATY 850
+ L +RL SD LL V + + ++ + + F ++ + V++
Sbjct: 146 KTRTGE--LINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVV 203
Query: 851 PLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELV 910
P + + + + + +A LA E + N+RTV AF E +E Y+ ++
Sbjct: 204 PPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVD 263
Query: 911 E----PSKRSFIRGQIAGIF--YGISQFFIFSSYGLALWYGSVLMGK------ELASFKS 958
K +F R AG F G+S I S L+ G +LMG EL+SF
Sbjct: 264 HVMQLARKEAFAR---AGFFGATGLSGNLIVLS---VLYKGGLLMGSAHMTVGELSSF-- 315
Query: 959 VMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELT--NVEG 1016
+M +F V +++G + +L+KG ++E+L+R+ ++ + G L + +G
Sbjct: 316 LMYAFWV----GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQG 371
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+E + VHF+YP+RPEV IF+DF+L + +G ALVG SGSGKSTVLSL+LR YDP +G
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 430
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 163/502 (32%), Positives = 270/502 (53%), Gaps = 9/502 (1%)
Query: 117 SSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDAL 176
+S++ C + + MR M+ +S FD + STG ++S IT D V +
Sbjct: 81 TSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSS 139
Query: 177 SEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKS 236
S + + + +G FI+ F WQ+S++ + + P++++A + + + ++ +
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNT 199
Query: 237 YVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSMHCXX 296
+ AE+++ + V F G++ K + + +SN +
Sbjct: 200 MGQVTTSAEQMLKGHKEVLIFGGQEVETKRF-DKVSNRMRLQGMKMVSASSISDPIIQLI 258
Query: 297 XXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA-FIRAKAAAYPI 355
S + T + + +IA + ++ ++ A F R AA +
Sbjct: 259 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 318
Query: 356 FEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVAL 415
F +++ + + + R +++ +G +EF++V+F YP R DV L IPAGK VAL
Sbjct: 319 FTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVAL 374
Query: 416 VGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475
VG SGSGKST+ SLI RFY+ GEIL+DG++++ L LR Q+ LV+Q LF T+
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434
Query: 476 ENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
NI Y + + + E+I AA+++ AM FI+ + +T +GE G+ LSGGQ+QRIAI+RA
Sbjct: 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594
++++ IL+LDEATSALD ESE ++Q ALD + RT++V+AHRLSTI AD I VV+
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDG 554
Query: 595 KIVKTGSHEELISNPNSAYAAL 616
IV+ G+H +L+ + YA L
Sbjct: 555 VIVERGTHNDLLEH-RGVYAQL 575
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 154/321 (47%), Gaps = 28/321 (8%)
Query: 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGL 827
++ + +R ++F ++ + +FD+ S+ L SR+ D+ + + +++
Sbjct: 95 KVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152
Query: 828 VTASFVIAFILNWRITLVVVATYPLI-ISGHISEKLFFQGYGGNLSKAYLKANMLAAEAV 886
+ F++ F +W+++++++ P++ I+ + K F + N+ + A + +
Sbjct: 153 IIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRF-RNISKNMQNTMGQVTTSAEQML 211
Query: 887 SNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGS 946
+ V F + E+ ++ + S R ++G IS I LAL +
Sbjct: 212 KGHKEVLIFGGQ----EVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAF-- 265
Query: 947 VLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDL----------LKGNQMAASVFEV 996
VL ASF SVM S +T + +AL+ L +G ++F +
Sbjct: 266 VLYA---ASFPSVMDSLTAGTITVV-FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTI 321
Query: 997 LDRKTQVIGDIGEE-LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQS 1055
LD + + D G+ + G +E R V F+YP R +V ++ NLK+ AGK++ALVG+S
Sbjct: 322 LDSEQE--KDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRS 378
Query: 1056 GSGKSTVLSLILRFYDPTAGK 1076
GSGKST+ SLI RFYD G+
Sbjct: 379 GSGKSTIASLITRFYDIDEGE 399
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 249 bits (636), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 163/502 (32%), Positives = 271/502 (53%), Gaps = 9/502 (1%)
Query: 117 SSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDAL 176
+S+I C + + MR M+ ++ FD + STG ++S IT D V +
Sbjct: 81 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSS 139
Query: 177 SEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKS 236
S + + + +G FI+ F WQ+S++ + + P++++A + + + ++ +
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNT 199
Query: 237 YVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSMHCXX 296
+ AE+++ + V F G++ K + + +SN +
Sbjct: 200 MGQVTTSAEQMLKGHKEVLIFGGQEVETKRF-DKVSNKMRLQGMKMVSASSISDPIIQLI 258
Query: 297 XXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA-FIRAKAAAYPI 355
S + T + + +IA + ++ ++ A F R AA +
Sbjct: 259 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 318
Query: 356 FEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVAL 415
F +++ + + + R +D+ +G +EF++V+F YP R +V L IPAGK VAL
Sbjct: 319 FAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVAL 374
Query: 416 VGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475
VG SGSGKST+ SLI RFY+ G IL+DG++++ L LR Q+ LV+Q LF T+
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434
Query: 476 ENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
NI Y + ++ + E+I AA+++ AM FI+ + +T +GE G+ LSGGQ+QRIAI+RA
Sbjct: 435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494
Query: 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594
++++ IL+LDEATSALD ESE ++Q ALD + RT++V+AHRLSTI AD I VV+
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554
Query: 595 KIVKTGSHEELISNPNSAYAAL 616
IV+ G+H EL++ + YA L
Sbjct: 555 IIVERGTHSELLAQ-HGVYAQL 575
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 154/320 (48%), Gaps = 28/320 (8%)
Query: 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGL 827
++ + +R ++F ++ + +FD+ S+ L SR+ D+ + + +++
Sbjct: 95 KVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152
Query: 828 VTASFVIAFILNWRITLVVVATYPLI-ISGHISEKLFFQGYGGNLSKAYLKANMLAAEAV 886
+ F++ F +W++++++V P++ I+ + K F + N+ + A + +
Sbjct: 153 IIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF-RSISKNMQNTMGQVTTSAEQML 211
Query: 887 SNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGS 946
+ V F + E+ ++ + S + ++G IS I LAL +
Sbjct: 212 KGHKEVLIFGGQ----EVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAF-- 265
Query: 947 VLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDL----------LKGNQMAASVFEV 996
VL ASF SVM S +T + +AL+ L +G ++F +
Sbjct: 266 VLYA---ASFPSVMDSLTAGTITVV-FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 321
Query: 997 LDRKTQVIGDIGEELTN-VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQS 1055
LD + + D G+ + + G +E R V F+YP R EV ++ NLK+ AGK++ALVG+S
Sbjct: 322 LDSEQE--KDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRS 378
Query: 1056 GSGKSTVLSLILRFYDPTAG 1075
GSGKST+ SLI RFYD G
Sbjct: 379 GSGKSTIASLITRFYDIDEG 398
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 183/274 (66%), Gaps = 3/274 (1%)
Query: 343 TAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDK 402
T ++ A+ +F++I+ D K + + ++ G I+ VSF Y + I
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIK-NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKD 359
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
L I G+ VA VG SG GKST+I+LI RFY+ SG+IL+DG+NIK LR QIGL
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
V Q+ LF+ T++ENIL G+ AT EE+ AAK++ A FI NLP+ ++T+VGERG++LS
Sbjct: 420 VQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582
GGQKQR++I+R + NP IL+LDEATSALD ESE+ +QEALD + RTT++VAHRLSTI
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539
Query: 583 RNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+AD I V++ IV+TG+H ELI+ AY L
Sbjct: 540 THADKIVVIENGHIVETGTHRELIAK-QGAYEHL 572
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 175/420 (41%), Gaps = 52/420 (12%)
Query: 685 IKLY-SMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD------TTQREV 737
IK Y V+P + Y + TI I +P+ L+ Y +D TT +V
Sbjct: 2 IKRYLQFVKP-YKYRIFATIIVGIIKFGIPMLI----PLLIKYAIDGVINNHALTTDEKV 56
Query: 738 KKITILFCCAAVITVIVHA----IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMD 793
+TI A I VIV I ++ +R+K+++ + + ++ +
Sbjct: 57 HHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFY--AN 114
Query: 794 NSSSILASRLESDA--------TLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845
N + SR+ +D T L I +D TI+I + I F L+ ++TL
Sbjct: 115 NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIII--------ALSIMFFLDVKLTLA 166
Query: 846 VVATYPLIISGHISEKLFF---QGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVL 902
+ +P I ++ +FF + S+A + E V I V +F ED
Sbjct: 167 ALFIFPFYI---LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA 223
Query: 903 ELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 962
+ + ++ R+ + Y + + G + G +G LA S+
Sbjct: 224 KNFDKKNTNFLTRALKHTRWNA--YSFAAINTVTDIGPIIVIG---VGAYLAISGSITVG 278
Query: 963 FMVLIVTALAM--GETLALVPDLLKGNQMAAS---VFEVLDRKTQVIGDIGEELTNV-EG 1016
+ V L + G LV Q AS VF+++D + +G + + +G
Sbjct: 279 TLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQG 338
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I++ V F Y E I KD NL + G+++A VG SG GKST+++LI RFYD T+G+
Sbjct: 339 RIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 261/501 (52%), Gaps = 21/501 (4%)
Query: 124 CWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNF 183
C + +MR ++ + FD E STG ++S IT D V A S + +
Sbjct: 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSI 146
Query: 184 MHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEI 243
+ + +G + F WQ+SLV + + P++A A ++V+ R G +
Sbjct: 147 VREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA---ISFVSKRFRKISRNMQTAMGHV 203
Query: 244 ---AEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXXXXXXXXXSM--HCXXXX 298
AE+++ + V ++ G++ K + + +SN+ +
Sbjct: 204 TSSAEQMLKGHKVVLSYGGQEVERKRF-DKVSNSMRQQTMKLVSAQSIADPVIQMIASLA 262
Query: 299 XXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA-FIRAKAAAYPIFE 357
++ G +FT + + + + +A +T+ F R AA +F
Sbjct: 263 LFAVLFLASVDSIRAELTPG--TFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG 320
Query: 358 MIERDTMSKASSKTGR-KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
+++ +T G+ + ++++G ++ KDV+F Y + A+ IP GK VALV
Sbjct: 321 LMDLET----ERDNGKYEAERVNGEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALV 375
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SGSGKST+ +L RFY+ SG I LDG++++ L LR+ LV+Q LF TI
Sbjct: 376 GRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435
Query: 477 NILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535
NI Y + + T E+I +AA+ + AM FI N+P+ +T +GE G LSGGQ+QR+AI+RA+
Sbjct: 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495
Query: 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595
+++ +L+LDEATSALD ESE ++Q ALD + +T +V+AHRLSTI AD I VV +
Sbjct: 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGE 555
Query: 596 IVKTGSHEELISNPNSAYAAL 616
I++ G H +L++ + AYA L
Sbjct: 556 IIERGRHADLLAQ-DGAYAQL 575
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 152/322 (47%), Gaps = 34/322 (10%)
Query: 769 LTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDAT--------LLRTIVVDRSTI 820
+ +++R ++F+ + + +FD+ S+ L SR+ D+ L +IV + ++I
Sbjct: 96 VVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASI 153
Query: 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG--HISEKLFFQGYGGNLSKAYLKA 878
+ GL+T + F +W+++LV++ P++ +S++ F+ N+ A
Sbjct: 154 I----GLLT----LMFWNSWQLSLVLIVVAPVVAFAISFVSKR--FRKISRNMQTAMGHV 203
Query: 879 NMLAAEAVSNIRTVAAFCSED---KVLELYSRELVEPSKRSFIRGQIAG-IFYGISQFFI 934
A + + + V ++ ++ K + S + + + + IA + I+ +
Sbjct: 204 TSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLAL 263
Query: 935 FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVF 994
F+ LA S+ +F V + L+ A+ ++ + +G ++F
Sbjct: 264 FAVLFLA-SVDSIRAELTPGTFTVVFSAMFGLMRPLKAL---TSVTSEFQRGMAACQTLF 319
Query: 995 EVLDRKTQVIGDIGE-ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVG 1053
++D +T+ D G+ E V G ++++ V F+Y + E + + GK++ALVG
Sbjct: 320 GLMDLETE--RDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVG 376
Query: 1054 QSGSGKSTVLSLILRFYDPTAG 1075
+SGSGKST+ +L RFYD +G
Sbjct: 377 RSGSGKSTIANLFTRFYDVDSG 398
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/515 (31%), Positives = 258/515 (50%), Gaps = 25/515 (4%)
Query: 108 VYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITS 167
+Y ++LF W++ + + ++R + + FD G++IS + +
Sbjct: 86 IYALTSLLF--WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD-RTPHGDIISRVIN 142
Query: 168 DIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTI 227
D+ + + L + F I G I+ F +SLVTLSIVPL L + + T
Sbjct: 143 DVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTR 202
Query: 228 GLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXXXXXX 287
++ + I EE I + ++ F E+K ++ + +
Sbjct: 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGV 262
Query: 288 XXXSMHCXXXXXXXXXXXXXXXXXHKHISNGG---------ESFTTMLNVVIAGLSLGQA 338
M+ K I G FT LN + ++ Q
Sbjct: 263 LPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM 322
Query: 339 APDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398
A A+A IFE++ D + +L ++ G IEFK+V F Y + V
Sbjct: 323 A---------LASAERIFEIL--DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPV- 370
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
I G+ VALVG +GSGK+T+++L+ RFY+ G+IL+DG +I+ + LR
Sbjct: 371 -LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
IG+V Q+ LF+TT++EN+ YG AT EEI AAKL+ + FI +LPE +ET + + G
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578
LS GQ+Q +AI+RA + NP IL+LDEATS +D ++E S+Q A+ ++M G+T++++AHR
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L+TI+NAD+I V++ +IV+ G H+ELI Y
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYY 584
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 57/353 (16%)
Query: 754 VHAIEHLSFGIMGE-RLTL------RVREKMFSAILSNEIGWFDEMDNSSSILASRLESD 806
++A+ L F + G+ LTL R+R+++F + +G+FD + I SR+ +D
Sbjct: 86 IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII--SRVIND 143
Query: 807 ATLLRTIVVDRSTILIQNF-GLVT--ASFVIAFILNWRITLVVVATYPL------IISGH 857
+ ++ +IQ F G+VT + ++ F +N ++LV ++ PL I+S
Sbjct: 144 VDNINNVL---GNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200
Query: 858 ISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSF 917
+ K F++ + + N + E +S + + F E+K +E + R V S R
Sbjct: 201 -TRKYFYEN-----QRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDR--VNESLRKV 252
Query: 918 IRGQIAGIFYGISQ----------FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLI 967
G A IF G+ F + S +G L ++ +A+F + F
Sbjct: 253 --GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFT--- 307
Query: 968 VTALAMGETLALVPDLLKGNQMAAS----VFEVLDRKTQVIGDIGEELTNVEGTIELRGV 1023
L + + QMA + +FE+LD + + EL V G IE + V
Sbjct: 308 -------RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNV 360
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
FSY + V+ KD ++ G+ +ALVG +GSGK+T+++L++RFYD G+
Sbjct: 361 WFSYDKKKPVL--KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG SGSGKST+ LI+RFY P +G+
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 219 bits (559), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG SGSGKST+ LI+RFY P +G+
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 219 bits (559), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG SGSGKST+ LI+RFY P +G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 219 bits (558), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG +GSGKST+ LI+RFY P +G+
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG++GSGKST+ LI RFY P G+
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 219 bits (557), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG SGSGKST+ LI+RFY P +G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ D+ATSALD ESE+ +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 155/224 (69%), Gaps = 3/224 (1%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+ V F Y I + I+A G SG GKST+ SL+ERFY+P +GEI +D
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFI 503
G I + L+ R QIG V+Q+ A+ A TIREN+ YG + D T E++ + L+ A SF+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
N+P++ T+VGERG+++SGGQ+QR+AI+RA ++NP IL+LDEAT++LD+ESE+ VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 564 DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
D +M GRTT+V+AHRLSTI +AD I ++ +I +G H EL++
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 1021 RGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
R V F+Y + I +D + + + +A G SG GKST+ SL+ RFY PTAG+
Sbjct: 5 RHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 215 bits (548), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 160/236 (67%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG SGSGKST+ LI+RFY P +G+
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++A RLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 215 bits (548), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 160/236 (67%), Gaps = 3/236 (1%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+++ F Y P P I D L I G+++ +VG SGSGKST+ LI+RFY P +G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ ++ GRT +++A RLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I R + F Y P P VI + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 204 bits (518), Expect = 3e-52, Method: Composition-based stats.
Identities = 101/240 (42%), Positives = 156/240 (65%), Gaps = 3/240 (1%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
L G ++F+DVSF YP+RPDV + + G++ ALVG +GSGKSTV +L++ Y+P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKL 496
G++LLDG + + ++L +Q+ V QEP +F +++ENI YG TMEEIT AA
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
S A SFIS LP+ ++T+V E G QLSGGQ+Q +A++RA+++ P +L+LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 557 NSVQEAL--DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
V++ L R+ +++ LS + AD I ++G I + G+H++L+ +A
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 250
Score = 66.2 bits (160), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
++EG ++ + V F+YP+RP+V++ + +R G+ ALVG +GSGKSTV +L+ Y P
Sbjct: 10 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 1073 TAGK 1076
T G+
Sbjct: 70 TGGQ 73
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 160/240 (66%), Gaps = 2/240 (0%)
Query: 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
K +IEF DV+F YP + + IP+G ALVG +GSGKST+ L+ RFY+
Sbjct: 13 KFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKL 496
G+I + G N+ + +R IG+V Q+ LF TI+ NILYGK DAT EE+ +A K
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
++ FI LP++++T VG +G++LSGG++QRIAI+R ++K+P I++ DEATS+LD+++E
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 557 NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
Q+A++ + RT +++AHRLSTI +A+ I ++ KIV+ G+H++L+ N YA +
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEM 250
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
IE V+FSYP + K N + +G + ALVG +GSGKST+ L+ RFYD
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 159/253 (62%), Gaps = 3/253 (1%)
Query: 355 IFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVA 414
+F++++ +T K G L G IEF++V F Y + + G+ +A
Sbjct: 28 MFDLLKEETEVKDLPGAG-PLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTLA 84
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI 474
LVG SG+GKST++ L+ RFY+ SG I +DG +I + LR IG+V Q+ LF TI
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
+NI YG+ A +E+ AA+ + I PE + TQVGERG++LSGG+KQR+AI+R
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594
I+K P I+LLDEATSALD +E ++Q +L +V RTT+VVAHRLST+ NAD I V++
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
Query: 595 KIVKTGSHEELIS 607
IV+ G HE L+S
Sbjct: 265 CIVERGRHEALLS 277
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 978 ALVPDLLKGNQM---AASVFEVLDRKTQVIGDIGE-ELTNVEGTIELRGVHFSYPSRPEV 1033
LVP +G+ M ++F++L +T+V G L +G IE VHFSY E
Sbjct: 13 GLVP---RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET 69
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+D + V G+++ALVG SG+GKST+L L+ RFYD ++G
Sbjct: 70 --LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 191 bits (484), Expect = 2e-48, Method: Composition-based stats.
Identities = 98/232 (42%), Positives = 145/232 (62%), Gaps = 3/232 (1%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
+ G ++F+DVSF YP+ P+V + + GK+ ALVG +GSGKSTV +L++ Y+P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKL 496
G++LLDG + D +L Q+ V QEP LF + RENI YG TMEEIT A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
S A FIS P+ ++T+VGE G QLSGGQ+Q +A++RA+++ P +L+LD+ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 557 NSVQEAL--DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606
VQ L RT +++ H+LS A I ++ + + G+H +L+
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
N++G ++ + V F+YP+ P V + + + GK ALVG +GSGKSTV +L+ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1073 TAGK 1076
T GK
Sbjct: 72 TGGK 75
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 187 bits (474), Expect = 4e-47, Method: Composition-based stats.
Identities = 97/232 (41%), Positives = 143/232 (61%), Gaps = 3/232 (1%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
+ G ++F+DVSF YP+ P+V + + GK+ ALVG +GSGKSTV +L++ Y+P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKL 496
G++LLDG + D +L Q+ V QEP LF + RENI YG TMEEIT A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
S A FIS P+ ++T+VGE G QLSGGQ+Q +A++RA+++ P +L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 557 NSVQEAL--DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606
VQ L RT +++ +LS A I ++ + + G+H +L+
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
N++G ++ + V F+YP+ P V + + + GK ALVG +GSGKSTV +L+ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1073 TAGK 1076
T GK
Sbjct: 72 TGGK 75
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 182 bits (461), Expect = 1e-45, Method: Composition-based stats.
Identities = 95/232 (40%), Positives = 142/232 (61%), Gaps = 3/232 (1%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
+ G ++F+DVSF YP+ P+V + + GK+ ALVG +GSGKSTV +L++ Y+P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKL 496
G++LLDG + D +L Q+ V QEP LF + RENI YG TMEEIT A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
S A FIS P+ ++T+VGE G QL+ GQ+Q +A++RA+++ P +L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 557 NSVQEAL--DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606
VQ L RT +++ +LS A I ++ + + G+H +L+
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
N++G ++ + V F+YP+ P V + + + GK ALVG +GSGKSTV +L+ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1073 TAGK 1076
T GK
Sbjct: 72 TGGK 75
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 249/490 (50%), Gaps = 19/490 (3%)
Query: 127 YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHY 186
Y + A +R R +L+ IS + T +I+ +T+D+ +Q+ + + +
Sbjct: 89 YASQNFGADLRRDLFRKVLSFSISNVN-RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRA 147
Query: 187 ISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIG---LIARVRKSYVKAGEI 243
F+GG ++ + ++S V + ++P I L ++ ++T L ++++S + +
Sbjct: 148 PLLFVGGIVMAVSINVKLSSVLIFLIPPIVL---LFVWLTKKGNPLFRKIQESTDEVNRV 204
Query: 244 AEEVIGNVRTVQAFAGEDKAVKVYK---EALSNTXXXXXXXXXXXXXXXXSMHCXXXXXX 300
E + VR V+AF E+ + ++ E+L + +
Sbjct: 205 VRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAV 264
Query: 301 XXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFI-RAKAAAYPIFEMI 359
I + ++ ++ + + +G +I FI RA A+A + E++
Sbjct: 265 LWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIG----NILNFIVRASASAKRVLEVL 320
Query: 360 -ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGG 418
E+ + +A + L + G + F++V F Y D + + G +VA++G
Sbjct: 321 NEKPAIEEADNALA--LPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGE 377
Query: 419 SGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478
+GSGKST+++LI R +P G + +D +++ + LK LR I V QE LF+ TI+EN+
Sbjct: 378 TGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437
Query: 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538
+G++DAT +EI AAK+++ FI +LPE ++++V G SGGQKQR++I+RA+VK
Sbjct: 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497
Query: 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598
P +L+LD+ TS++D +E + + L R G TT ++ ++ T AD I V+ K+
Sbjct: 498 PKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557
Query: 599 TGSHEELISN 608
G+H+EL+ +
Sbjct: 558 FGTHKELLEH 567
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 150/315 (47%), Gaps = 24/315 (7%)
Query: 773 VREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASF 832
+R +F +LS I + SS L +RL +D T L+ +V+ I+++ L
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 833 VIAFILNWRITLVVVATYPLIISGHI-----SEKLFFQGYGGNLSKAYLKANMLAAEAVS 887
V+A +N +++ V++ P I+ + LF + + ++ + N + E +
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRK-----IQESTDEVNRVVRENLL 210
Query: 888 NIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGL--ALWYG 945
+R V AF E+ E + R+ E +RS I + I + + F + G+ LW+G
Sbjct: 211 GVRVVRAFRREEYENENF-RKANESLRRSIISA-FSLIVFALPLFIFIVNMGMIAVLWFG 268
Query: 946 SVLMGK---ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002
VL+ E+ S + M ++ + + +G L + ++ + A V EVL+ K
Sbjct: 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFI---VRASASAKRVLEVLNEKPA 325
Query: 1003 VI-GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
+ D L NVEG++ V F Y + V+ N V+ G +A++G++GSGKST
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKST 384
Query: 1062 VLSLILRFYDPTAGK 1076
+++LI R DP G+
Sbjct: 385 LMNLIPRLIDPERGR 399
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 16/227 (7%)
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DL 453
+ + L +PAG+I ++G SG+GKST+I + P G +L+DG + L +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 454 KWLRQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERF 510
R+QIG++ Q L ++ T+ N+ D+ +E+ R +++E +S + L ++
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR--RVTELLSLVG-LGDKH 134
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MV 568
++ LSGGQKQR+AI+RA+ NP +LL DEATSALD + S+ E L + +
Sbjct: 135 DSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL 190
Query: 569 GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
G T +++ H + + R D +AV+ ++++ + E+ S+P + A
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 16/227 (7%)
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DL 453
+ + L +PAG+I ++G SG+GKST+I + P G +L+DG + L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 454 KWLRQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERF 510
R+QIG++ Q L ++ T+ N+ D+ +E+ R +++E +S + L ++
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR--RVTELLSLVG-LGDKH 157
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MV 568
++ LSGGQKQR+AI+RA+ NP +LL D+ATSALD + S+ E L + +
Sbjct: 158 DSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 569 GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
G T +++ H + + R D +AV+ ++++ + E+ S+P + A
Sbjct: 214 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 260
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 15/222 (6%)
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
+ L I G+ +AL+G SGSGKST++ I Y+P SG+I D ++ L K +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 460 IGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+GLV Q AL+ T+ +NI + + A EEI + + M I L R+ Q
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVV 574
LSGGQ+QR+AI+RA+VK P +LLLDE S LDA V+ L R+ +G TTV
Sbjct: 134 ----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 575 VAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
V H + + AD IAV++ +I++ G+ +E+ P +
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVG 231
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ NLK++ G+ MAL+G SGSGKST+L I Y PT+GK
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 16/227 (7%)
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DL 453
+ + L +PAG+I ++G SG+GKST+I + P G +L+DG + L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 454 KWLRQQIGLVNQEPALFAT-TIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERF 510
R+QIG + Q L ++ T+ N+ D+ +E+ R +++E +S + L ++
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR--RVTELLSLVG-LGDKH 157
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MV 568
++ LSGGQKQR+AI+RA+ NP +LL D+ATSALD + S+ E L + +
Sbjct: 158 DSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 569 GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
G T +++ H + R D +AV+ ++++ + E+ S+P + A
Sbjct: 214 GLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 260
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 22/231 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++ +F + +R D + IP G +VA+VG G GKS+++S + + + G +
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLSEA 499
+ G+ + V Q+ + ++RENIL+G ++ + +A L
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ LP T++GE+G+ LSGGQKQR++++RA+ N I L D+ SA+DA +
Sbjct: 110 LEI---LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 560 QEAL---DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
E + ++ +T ++V H +S + DVI V+ G KI + GS++EL++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+I +R F++ +R + + G +A+VGQ G GKS++LS +L D G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 14/214 (6%)
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
D L + +G+ ++G +G+GK+ + LI F+ P SG ILLDG ++ DL +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHD 73
Query: 460 IGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
I V Q +LF +++N+ +G +++ R + + + E +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL--------KIEHLLDRNP 125
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR--TTVVVA 576
+ LSGG++QR+A++RA+V NP ILLLDE SALD ++ + +E L + T + +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 577 HRLSTIR-NADVIAVVQGRKIVKTGSHEELISNP 609
H + R AD IAVV K+++ G EE+ P
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ +LKV +G+ ++G +G+GK+ L LI F+ P +G+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 25/230 (10%)
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
V D ++ G+ VAL+G SG GK+T + ++ Y+P SGEI D + + K+
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY- 74
Query: 457 RQQIGLVNQEPALFA-TTIRENILY-------GKDDATMEEITRAAKLSEAMSFISNLPE 508
+++G+V Q AL+ T+ ENI + KD+ + A KL I NL +
Sbjct: 75 -REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----LIDNLLD 128
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM- 567
R TQ LSGGQ+QR+A++RA+VK P +LL DE S LDA ++ + +
Sbjct: 129 RKPTQ-------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181
Query: 568 -VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+G T+V V H + + A IAV K+V+ G+ +E+ +P + + A
Sbjct: 182 ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVA 231
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ +V+ G+ +AL+G SG GK+T L ++ Y PT+G+
Sbjct: 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 13/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF V YP F I G++V L+G SGSGK+T++ LI P G++
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSF--QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+ G + DL ++ +GLV Q ALF T+ +N+ +G + + + A++ E +
Sbjct: 73 WIGGKRVT--DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
F+ R E+ +LSGGQ+QR+A++RA+ P +LL DE +A+D + ++
Sbjct: 131 RFM-----RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 561 EALDRVM--VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ +V +G T+V V H + + AD + V+ + + G+ EE+ P + + A
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
TIE GV YP V + + ++R G+ + L+G SGSGK+T+L LI PT G
Sbjct: 14 TIEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 18/196 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL------KWLRQ 458
L+I G+ V+++G SGSGKST++++I +P GE+ +D NIK DL K R
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDDDELTKIRRD 83
Query: 459 QIGLVNQE----PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
+IG V Q+ P L A E L K M R + E + ++ L ERF
Sbjct: 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK-MAELEERFANH- 141
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTT 572
+ QLSGGQ+QR+AI+RA+ NP I+L D+ T ALD+++ + + L ++ G+T
Sbjct: 142 --KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 573 VVVAHRLSTIRNADVI 588
VVV H ++ R + I
Sbjct: 200 VVVTHDINVARFGERI 215
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVVI-FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L+ V +Y E++ K+ NL ++ G+ ++++G SGSGKST+L++I PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 18/196 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL------KWLRQ 458
L+I G+ V+++G SGSGKST++++I +P GE+ +D NIK DL K R
Sbjct: 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDDDELTKIRRD 83
Query: 459 QIGLVNQE----PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
+IG V Q+ P L A E L K M R + E + ++ L ERF
Sbjct: 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK-MAELEERFANH- 141
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTT 572
+ QLSGGQ+QR+AI+RA+ NP I+L D+ T ALD+++ + + L ++ G+T
Sbjct: 142 --KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 573 VVVAHRLSTIRNADVI 588
VVV H ++ R + I
Sbjct: 200 VVVTHDINVARFGERI 215
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVVI-FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++L+ V +Y E++ K+ NL ++ G+ ++++G SGSGKST+L++I PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 407 IPAGKIVALVGGSGSGKST---VISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQIG 461
I G++V ++G SGSGKST ++L+E F E GEI++DG N+K D L +R+++G
Sbjct: 26 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNLNKVREEVG 82
Query: 462 LVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
+V Q LF T+ NI + + R ++AM + + + +
Sbjct: 83 MVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKAHAYPDS 138
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
LSGGQ QR+AI+RA+ P I+L DE TSALD E V + ++ G T VVV H +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 198
Query: 580 STIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610
R D + + G I++ G E+L P
Sbjct: 199 GFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 230
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ K N+ +R G+ + ++G SGSGKST L + D G+
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 59
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 110/212 (51%), Gaps = 15/212 (7%)
Query: 407 IPAGKIVALVGGSGSGKST---VISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQIG 461
I G++V ++G SGSGKST ++L+E F E GEI++DG N+K D L +R+++G
Sbjct: 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNLNKVREEVG 103
Query: 462 LVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
+V Q LF T+ NI + + R ++AM + + + +
Sbjct: 104 MVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKAHAYPDS 159
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
LSGGQ QR+AI+RA+ P I+L DE TSALD E V + ++ G T VVV H +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219
Query: 580 STIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610
R D + + G I++ G E+L P
Sbjct: 220 GFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ K N+ +R G+ + ++G SGSGKST L + D G+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 75/220 (34%), Positives = 112/220 (50%), Gaps = 19/220 (8%)
Query: 382 IEFKDVSFCYPSRPDVAI-FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ K+V+ Y ++ L+I G+ V++ G SGSGKST +++I +P GE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 441 ILLDGNNIKGLDL------KWLRQQIGLVNQE----PALFATTIRENILYGKDDATMEEI 490
+ +D NIK DL K R +IG V Q+ P L A E L K
Sbjct: 62 VYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
R + E + + L ERF + QLSGGQ+QR+AI+RA+ NP I+L DE T A
Sbjct: 120 ERRKRALECLK-XAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADEPTGA 175
Query: 551 LDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVI 588
LD+++ + + L ++ G+T VVV H ++ R + I
Sbjct: 176 LDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERI 215
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVVI-FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L+ V +Y E++ K+ NL ++ G+ +++ G SGSGKST L++I PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 25/244 (10%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
K+VS + + V D ++I G+ ++G SG+GK+T + +I P +GE+ D
Sbjct: 7 KNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 445 GNNIKG---LDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--EEITR----AA 494
+ L + ++IG+V Q AL+ T ENI + + M EEI + A
Sbjct: 66 DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA 125
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
K+ + +++ P +LSGGQ+QR+A++RA+VK+PS+LLLDE S LDA
Sbjct: 126 KILDIHHVLNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611
+S + + V +G T +VV+H + I AD + V+ K+V+ G E+L NP S
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234
Query: 612 AYAA 615
A
Sbjct: 235 IQVA 238
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+VV + N+ + G+ ++G SG+GK+T + +I P+ G+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 25/244 (10%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
K+VS + + V D ++I G+ ++G SG+GK+T + +I P +GE+ D
Sbjct: 7 KNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 445 GNNIKG---LDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--EEITR----AA 494
+ L + ++IG+V Q AL+ T ENI + + M EEI + A
Sbjct: 66 DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA 125
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
K+ + +++ P +LSG Q+QR+A++RA+VK+PS+LLLDE S LDA
Sbjct: 126 KILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611
+S + + V +G T +VV+H + I AD + V+ K+V+ G E+L NP S
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234
Query: 612 AYAA 615
A
Sbjct: 235 IQVA 238
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+VV + N+ + G+ ++G SG+GK+T + +I P+ G+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
+K L I G+ + L+G SG GK+T + +I EP G I ++ L K + I
Sbjct: 29 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 86
Query: 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
+V Q A++ T+ ENI + +EI + + + + I L R+ Q
Sbjct: 87 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ---- 142
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVV 575
LSGGQ+QR+A++RAIV P +LL+DE S LDA+ +++ + ++ + TT+ V
Sbjct: 143 ---LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 199
Query: 576 AH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
H ++ + D IAV+ ++++ GS E+ PNS + A
Sbjct: 200 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 240
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
NL ++ G+ + L+G SG GK+T L +I +PT G+
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 68
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 125/230 (54%), Gaps = 17/230 (7%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI--KGLDL 453
+ + + L + G+I+ ++G SG GK+T++ + F +P SGEI L G I K +L
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPER 509
+++G + QE LF T+ NI YG + T +E R + E ++ IS L R
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE-LTGISELAGR 134
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV- 568
+ + LSGGQ+QR A++RA+ +P ++LLDE SALD + ++E + +
Sbjct: 135 YPHE-------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 569 -GRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
G++ V V+H R ++ AD IAV++ +I++T S EL P AAL
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAAL 237
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ D +L + G+ + ++G SG GK+T+L + F P +G+
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
+K L I G+ + L+G SG GK+T + +I EP G I ++ L K + I
Sbjct: 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85
Query: 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
+V Q A++ T+ ENI + +EI + + + + I L R+ Q
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ---- 141
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVV 575
LSGGQ+QR+A++RAIV P +LL+DE S LDA+ +++ + ++ + TT+ V
Sbjct: 142 ---LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 198
Query: 576 AH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
H ++ + D IAV+ ++++ GS E+ PNS + A
Sbjct: 199 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 239
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
NL ++ G+ + L+G SG GK+T L +I +PT G+
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 11/211 (5%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+ + + G +GSGKST++ ++ EP SG++L DG KG + +R+ IG+ Q
Sbjct: 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIAFQY 86
Query: 467 P--ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
P FA + + + + + + + +AM F+ + F+ +V LSGG
Sbjct: 87 PEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV---PFFLSGG 142
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIR 583
+K+R+AI+ IV P IL+LDE LD E + + +++ +G+T ++++H + T+
Sbjct: 143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202
Query: 584 N-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
N D + V++ K V G+ E + + +
Sbjct: 203 NHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
++ +L + G+ + + G +GSGKST+L ++ +PT+G
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 11/211 (5%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+ + + G +GSGKST++ ++ EP SG++L DG KG + +R+ IG+ Q
Sbjct: 32 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIAFQY 88
Query: 467 P--ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
P FA + + + + + + + +AM F+ + F+ +V LSGG
Sbjct: 89 PEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV---PFFLSGG 144
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIR 583
+K+R+AI+ IV P IL+LDE LD E + + +++ +G+T ++++H + T+
Sbjct: 145 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 204
Query: 584 N-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
N D + V++ K V G+ E + + +
Sbjct: 205 NHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 235
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1016 GTIELRGV-HFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
G IE+ V H + P E ++ +L + G+ + + G +GSGKST+L ++ +PT
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1074 AG 1075
+G
Sbjct: 63 SG 64
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 19/226 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+VSF + + L+I G+++A+ G +GSGK++++ LI E G I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSF 502
G ++ +Q + TI+ENI++G D+ + + +A +L +
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD--- 142
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
I+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD LD +E V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 563 -LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
V FS+ + K+ NL + G+ +A+ G +GSGK+++L LIL + + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 19/226 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+VSF + + L+I G+++A+ G +GSGK++++ LI E G I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSF 502
G ++ +Q + TI+ENI++G D+ + + +A +L +
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD--- 142
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
I+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD LD +E V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 563 -LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
V FS+ + K+ NL + G+ +A+ G +GSGK+++L LIL + + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 19/189 (10%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+++A+ G +G+GK++++ +I EP G+I G +I +Q
Sbjct: 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQF 77
Query: 467 PALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
+ TI+ENI++G D+ + +A +L E IS E+ +GE GI LSGG
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGG 134
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIR 583
Q+ RI+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++
Sbjct: 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194
Query: 584 NADVIAVVQ 592
AD I ++
Sbjct: 195 KADKILILH 203
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 19/189 (10%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+++A+ G +G+GK++++ +I EP G+I G +I +Q
Sbjct: 43 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQF 89
Query: 467 PALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
+ TI+ENI++G D+ + +A +L E IS E+ +GE GI LSGG
Sbjct: 90 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGG 146
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIR 583
Q+ RI+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++
Sbjct: 147 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 206
Query: 584 NADVIAVVQ 592
AD I ++
Sbjct: 207 KADKILILH 215
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 76
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 3/236 (1%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + KD++ Y + AI + I G+ V L+G +GSGKST++S R G
Sbjct: 18 GQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
EI +DG + + L+ R+ G++ Q+ +F+ T R+N L + +EI + A
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVGL 134
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
S I P + + + + G LS G KQ + ++R+++ ILLLDE ++ LD + +
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ L + T ++ R+ + D V++ K+ + S EL P + A
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
I ++ + + G+ + L+G++GSGKST+LS LR +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 17/209 (8%)
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TT 473
L+G +G+GKS + LI +P GE+ L+G +I L + R+ IG V Q+ ALF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 474 IRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532
+ NI YG ++ +E R +++E + I++L +R + +LSGG++QR+A++
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLG-IAHLLDR-------KPARLSGGERQRVALA 138
Query: 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAH----RLSTIRNADVI 588
RA+V P +LLLDE SA+D +++ + E L R + V + H + AD +
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 589 AVVQGRKIVKTGSHEELISNPNSAYAALV 617
AV+ +IV+ G +EL S N A +
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+VSF + + L+I G+++A+ G +GSGK++++ LI E G I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSF 502
G ++ +Q + TI+ENI+ G D+ + + +A +L +
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQD--- 142
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
I+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD LD +E V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 563 -LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 995 EVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQ 1054
E+L++ Q GD + ++ E + H P + K+ NL + G+ +A+ G
Sbjct: 20 ELLEKVQQSNGD--RKHSSDENNVSFS--HLCLVGNP---VLKNINLNIEKGEMLAITGS 72
Query: 1055 SGSGKSTVLSLILRFYDPTAG 1075
+GSGK+++L LIL + + G
Sbjct: 73 TGSGKTSLLMLILGELEASEG 93
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+VSF + + L+I G+++A+ G +GSGK++++ LI E G I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSF 502
G ++ +Q + TI+ENI+ G D+ + + +A +L +
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQD--- 142
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
I+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD LD +E V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 563 -LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
V FS+ + K+ NL + G+ +A+ G +GSGK+++L LIL + + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 28/239 (11%)
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
E+ E+ + + KT D LS F S + I G+++A+
Sbjct: 20 ELFEKAKQNNNNRKTSNGDDSLS---------FSNFSLLGTPVLKDINFKIERGQLLAVA 70
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G +G+GK++++ +I EP G+I G +I +Q + TI+E
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKE 117
Query: 477 NILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
NI+ G D+ + +A +L E IS E+ +GE GI LSGGQ+ RI+++RA
Sbjct: 118 NIIAGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLARA 174
Query: 535 IVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592
+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++ AD I ++
Sbjct: 175 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 233
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+FS P + KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 45 NFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 27/238 (11%)
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
E+ E+ + + KT D LS F S + I G+++A+
Sbjct: 20 ELFEKAKQNNNNRKTSNGDDSLS---------FSNFSLLGTPVLKDINFKIERGQLLAVA 70
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G +G+GK++++ +I EP G+I G +I +Q + TI+E
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKE 117
Query: 477 NIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535
NI+ D+ + +A +L E IS E+ +GE GI LSGGQ+ RI+++RA+
Sbjct: 118 NIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAV 174
Query: 536 VKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592
K+ + LLD LD +E + E+ + ++M +T ++V ++ ++ AD I ++
Sbjct: 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+FS P + KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 45 NFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+V + LDI G+ V VG SG GKST++ +I SG++ + + D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPP 72
Query: 456 LRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPE 508
+ +G+V Q AL+ ++ EN+ +G K + + + + A++ + + P+
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM- 567
LSGGQ+QR+AI R +V PS+ LLDE S LDA ++ + R+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 568 -VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+GRT + V H ++ + AD I V+ ++ + G EL P + A
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
EVV+ KD NL + G+ + VG SG GKST+L +I T+G
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+V + LDI G+ V VG SG GKST++ +I SG++ + + D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPP 72
Query: 456 LRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPE 508
+ +G+V Q AL+ ++ EN+ +G K + + + + A++ + + P+
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM- 567
LSGGQ+QR+AI R +V PS+ LLDE S LDA ++ + R+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 568 -VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+GRT + V H ++ + AD I V+ ++ + G EL P + A
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
EVV+ KD NL + G+ + VG SG GKST+L +I T+G
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+++A+ G +G+GK++++ +I EP G+I G +I +Q
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 467 PALFATTIRENIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
+ TI+ENI+ D+ + +A +L E IS E+ +GE GI LSGGQ
Sbjct: 108 SWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQ 164
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRN 584
+ RI+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++
Sbjct: 165 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224
Query: 585 ADVIAVVQ 592
AD I ++
Sbjct: 225 ADKILILH 232
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+FS P + KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 45 NFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-----KG 450
+V + L++ G+ + L+G SG GK+T + +I EP G+I + G+ + KG
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKG 73
Query: 451 LDLKWLRQQIGLVNQEPALFA-TTIRENILYG---KDDATMEEITRAAKLSEAMSFISNL 506
+ + + I +V Q AL+ T+ +NI + + E R +++E + L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL 133
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+ +LSGGQ+QR+A+ RAIV+ P + L+DE S LDA+ ++ L ++
Sbjct: 134 --------NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 567 --MVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+G TT+ V H ++ + D IAV+ + + GS +E+ P + + A
Sbjct: 186 QRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVA 237
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
EV ++ +L+V+ G+ M L+G SG GK+T L +I +P+ G+
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+VSF + + L+I G+++A+ G +GSGK++++ LI E G I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL-YGKDDATMEEITRAAKLSEAMSFI 503
G ++ +Q + TI+ENI+ D+ + + +A +L + I
Sbjct: 99 G-------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQD---I 142
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA- 562
+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD LD +E V E+
Sbjct: 143 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 202
Query: 563 LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 203 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
V FS+ + K+ NL + G+ +A+ G +GSGK+++L LIL + + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG 93
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 19/231 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGL 451
DV L+I G+ + L+G SG GK+T + I EP G+I ++ N + KG+
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 452 DLKWLRQQIGLVNQEPALFA-TTIRENILYG---KDDATMEEITRAAKLSEAMSFISNLP 507
+ + + V Q AL+ T+ +NI + + E R +++E + L
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL- 136
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV- 566
+ +LSGGQ+QR+A+ RAI++ P + L DE S LDA+ + L ++
Sbjct: 137 -------NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 567 -MVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+G TT+ V H ++ D IAV ++ + G+ +E+ P + + A
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVA 240
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+V KD +L+++ G+ + L+G SG GK+T L I +PT G+
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQ 62
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+V + LDI G+ V VG SG GKST++ +I SG++ + + D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPP 72
Query: 456 LRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPE 508
+ +G+V Q AL+ ++ EN+ +G K + + + + A++ + + P+
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM- 567
LSGGQ+QR+AI R +V PS+ LLD+ S LDA ++ + R+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHK 181
Query: 568 -VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+GRT + V H ++ + AD I V+ ++ + G EL P + A
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
EVV+ KD NL + G+ + VG SG GKST+L +I T+G
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+++A+ G +G+GK++++ +I EP G+I G +I +Q
Sbjct: 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQF 77
Query: 467 PALFATTIRENIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
+ TI+ENI+ D+ + +A +L E IS E+ +GE GI LSGGQ
Sbjct: 78 SWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQ 134
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRN 584
+ RI+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++
Sbjct: 135 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 194
Query: 585 ADVIAVVQ 592
AD I ++
Sbjct: 195 ADKILILH 202
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 37/232 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------------- 451
L AG +++++G SGSGKST + I +P G I+++G NI +
Sbjct: 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86
Query: 452 DLKWLRQQIGLVNQEPALFA-TTIRENIL--------YGKDDATMEEITRAAKLSEAMSF 502
L+ LR ++ +V Q L++ T+ EN++ K DA + AK+
Sbjct: 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG----- 141
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ ER + G+ + LSGGQ+QR++I+RA+ P +LL DE TSALD E V
Sbjct: 142 ---IDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 195
Query: 563 LDRVM-VGRTTVVVAHRLSTIR--NADVIAVVQGRKIVKTGSHEELISNPNS 611
+ ++ G+T VVV H + R ++ VI + QG KI + G E++ NP S
Sbjct: 196 MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG-KIEEEGDPEQVFGNPQS 246
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE VSF Y D + D + GKI +VG +GSGK+T++ ++ +GE
Sbjct: 11 RIELNSVSFRYNG--DYVLKD-VNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENILYGKDDATMEEITRAAKLSE 498
I LDG+ D LR+ +G V Q P+ + T+ E++ + + ++E ++ +
Sbjct: 67 IFLDGSPA---DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ + + LSGGQKQR+AI+ + ++ L LDE S LD S+
Sbjct: 124 VLELVG-----LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQRE 178
Query: 559 VQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ + L+ + G+ ++V H L + + D I + I GS EE +
Sbjct: 179 IFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
IEL V F Y + KD N + GK +VG++GSGK+T+L ++
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKIL 57
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 19/189 (10%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+++A+ G +G+GK++++ +I EP G+I G +I +Q
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQF 107
Query: 467 PALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
+ TI+ENI++G D+ + +A +L E IS E+ +GE GI LS G
Sbjct: 108 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSEG 164
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIR 583
Q+ +I+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++
Sbjct: 165 QQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 224
Query: 584 NADVIAVVQ 592
AD I ++
Sbjct: 225 KADKILILH 233
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 19/229 (8%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWL 456
D LDI + A+VG S SGKST+I + + P LSG +L G ++ + + L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 457 RQ----QIGLVNQEPALFATTIRENILYGKDDATMEEITRA-----AKLSEAMSFISNLP 507
R+ +I LV Q + I + KD + + K SE + + P
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
E + +QLSGG KQR+ I+ A++ +P +L+LDE TSALD ++ + + L +
Sbjct: 145 EAV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELK 201
Query: 568 VGR--TTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
T + V H ++ AD +AV+ G +V+ S ++ NP Y
Sbjct: 202 KMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPY 250
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIGLV 463
L +P G+IV L+G +G+GK+T +S I G+I+ +G +I + R I LV
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALV 86
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
+ +F T+ EN+ G + +E + + +I +L R + ++ + G LS
Sbjct: 87 PEGRRIFPELTVYENLXXGAYNRKDKE-----GIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR--LS 580
GG++Q +AI RA+ P +L DE + L + V E + ++ TT+++ + L
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISN 608
++ A V++ +IV G EL+ N
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E++ +H Y + + K +LKV G+ + L+G +G+GK+T LS I GK
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 18/188 (9%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+++A+ G +G+GK++++ +I EP G+I G +I +Q
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQF 107
Query: 467 PALFATTIRENIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
+ TI+ENI+ D+ + +A +L E IS E+ +GE GI LS GQ
Sbjct: 108 SWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSEGQ 164
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRN 584
+ +I+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++ ++
Sbjct: 165 QAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224
Query: 585 ADVIAVVQ 592
AD I ++
Sbjct: 225 ADKILILH 232
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+ GK
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 29/222 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLKWLRQQI 460
++I G++ A++GG+G GKST+ +P SG IL D I KG+ LR+ I
Sbjct: 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI--MKLRESI 86
Query: 461 GLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEAM--SFISNLPERFETQVGE 516
G+V Q+P LF+ ++ +++ +G + + E ++ A+ + I +L ++ T
Sbjct: 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-PTHC-- 143
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVV 574
LS GQK+R+AI+ +V P +L+LDE T+ LD + + + L + +G T ++
Sbjct: 144 ----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 575 VAHRLSTIR--NADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
H + + +V + +GR I++ NP +A
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRVILQ--------GNPKEVFA 233
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457
A+ + L I +G++VA++G +G+GKST++ L+ + P GE L G N+ K L
Sbjct: 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84
Query: 458 QQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+ ++ Q L F ++ E I G+ + +A + A + L +R + +V
Sbjct: 85 RTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRV-- 141
Query: 517 RGIQLSGGQKQRIAISRAIVK------NPSILLLDEATSALDAESENSVQEALDRVMVGR 570
LSGG++QR+ ++R + + P L LDE TSALD + L ++
Sbjct: 142 ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 571 TTVV--VAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
V V H L+ AD I ++ K+V G+ EE+++
Sbjct: 198 PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
L H Y + + +I D +L + +G+ +A++G +G+GKST+L L+ + P+ G+
Sbjct: 12 LEASHLHYHVQQQALI-NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 112/223 (50%), Gaps = 29/223 (13%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQIGLVN 464
++ AG+I+ LVG +G+GKST+++ + G I G ++ K + L
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
Q+ FAT + + + D T E+ + A+ + ++G QLSGG
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----------DDKLGRSTNQLSGG 130
Query: 525 QKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV-----GRTT 572
+ QR+ ++ +++ NP+ +LLLD+ ++LD Q ALD+++ G
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQGLAI 186
Query: 573 VVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
V+ +H L+ T+R+A +++G K++ +G EE+++ PN A A
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
+VRAG+ + LVG +G+GKST+L+ R T+GK
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKG 54
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 66.2 bits (160), Expect = 9e-11, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 29/223 (13%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQIGLVN 464
++ AG+I+ LVG +G+GKST+++ + G I G ++ K + L
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
Q+ FAT + + + D T E+ + A+ + ++G QLSGG
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----------DDKLGRSTNQLSGG 130
Query: 525 QKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV-----GRTT 572
+ QR+ ++ +++ NP+ +LLLD+ +LD Q ALD+++ G
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQGLAI 186
Query: 573 VVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
V+ +H L+ T+R+A +++G K++ +G EE+++ PN A A
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
+VRAG+ + LVG +G+GKST+L+ R T+GK
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKG 54
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 33/225 (14%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE--ILLDGNNIKGLD-LKWLRQQIGL 462
++ AG+I+ LVG +G+GKST L+ R SG+ I G ++ K + L
Sbjct: 22 EVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYL 78
Query: 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q+ FAT + + + D T E+ + A+ + ++G QLS
Sbjct: 79 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----------DDKLGRSTNQLS 128
Query: 523 GGQKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV-----GR 570
GG+ QR+ ++ +++ NP+ +LLLDE ++LD Q ALD+++ G
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQQGL 184
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
V +H L+ T+R+A +++G K + +G EE+++ PN A A
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
+VRAG+ + LVG +G+GKST+L+ R T+GK
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKG 54
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 38/217 (17%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-- 456
I L + G+ V+++G SGSGKST++ ++ P G++ L+G + + K L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 457 --RQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
+++G V Q L T EN++ M ++ + K ++ ER E
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVI-----VPMLKMGKPKKEAK---------ERGEYL 124
Query: 514 VGERGI---------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
+ E G+ +LSGG++QR+AI+RA+ P +L DE T LD+ + V +
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 565 RVMVGRTTVV----------VAHRLSTIRNADVIAVV 591
++ G T++V + HR +++ V+ +
Sbjct: 185 KINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEI 221
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I K +L V+ G+ ++++G SGSGKST+L ++ PT GK
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 33/225 (14%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE--ILLDGNNIKGLD-LKWLRQQIGL 462
++ AG+I+ LVG +G+GKST L+ R SG+ I G ++ K + L
Sbjct: 22 EVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYL 78
Query: 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q+ FAT + + + D T E+ + A+ + ++G QLS
Sbjct: 79 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----------DDKLGRSTNQLS 128
Query: 523 GGQKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV-----GR 570
GG+ QR+ ++ +++ NP+ +LLLDE ++LD Q ALD+++ G
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQQGL 184
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
V +H L+ T+R+A +++G K + +G EE+++ PN A A
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKA 1077
+VRAG+ + LVG +G+GKST+L+ R T+GK
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKG 54
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 19/215 (8%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
I +I G+I L+G +G+GK+T + +I +P SG + + G N+ + +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 459 QIGLVNQEPALFATTIRENIL------YGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
I + +E + L Y + +EE+ A + I+ L E+ +
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA------TEIAGLGEKIKD 142
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRT 571
+V S G +++ I+RA++ NP + +LDE TS LD + V++ L + G T
Sbjct: 143 RVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 572 TVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605
+V +H + + D IA++ IV+TG+ EEL
Sbjct: 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
I K + ++ G+ L+G +G+GK+T L +I P++G
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+F + D+ G I+A++G +G GKST++ L+ + P+ G+I + Q
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ 66
Query: 459 QIGLVNQE-PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
IG V Q + FA ++ + +L G+ +T K + + L T + +R
Sbjct: 67 SIGFVPQFFSSPFAYSVLDIVLMGR--STHINTFAKPKSHDYQVAMQALDYLNLTHLAKR 124
Query: 518 GI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
LSGGQ+Q I I+RAI ++LLDE TSALD +++ V L + + VV
Sbjct: 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV- 183
Query: 577 HRLSTIRNADVIAV 590
+T + V+A+
Sbjct: 184 --FTTHQPNQVVAI 195
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ E +F+ N + G +A++GQ+G GKST+L L+L + P GK
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 30/230 (13%)
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
D + + G + ++G +GSGKST+I++I F + G + + +I + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 460 IGLVN--QEP-ALFATTIRENILYGKDD----------------ATMEEITRAAKLSEAM 500
G+V Q P L T+ EN+L G+ + E + +A K+ E +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSV 559
L ++ + GE LSGGQ + + I RA++ NP ++++D+ + + + +
Sbjct: 142 ----KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIF 193
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
L+ G T +++ HRL + N D + V+ +I+ G EE I N
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
D + + G + ++G +GSGKST+I++I F + G + + +I + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 460 IGLVN--QEP-ALFATTIRENILYGKDDA----------------TMEEITRAAKLSEAM 500
G+V Q P L T+ EN+L G+ + E + +A K+ E +
Sbjct: 83 -GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSV 559
+S+L +R + GE LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 142 K-LSHLYDR---KAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
L+ G T +++ HRL + N D + V+ +I+ G EE I N
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
D + + G + ++G +GSGKST+I++I F + G + + +I + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 460 IGLVN--QEP-ALFATTIRENILYG--------------KDDATMEE--ITRAAKLSEAM 500
G+V Q P L T+ EN+L G K EE + +A K+ E +
Sbjct: 83 -GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSV 559
+S+L +R + GE LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 142 K-LSHLYDR---KAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
L+ G T +++ HRL + N D + V+ +I+ G EE I N
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 22/138 (15%)
Query: 496 LSEAMSFISNLPERFET------------QVGERGIQLSGGQKQRIAISRAIVKNPS--- 540
+ EA+ F N+P T ++G+ LSGG+ QRI ++ + K +
Sbjct: 769 VDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRT 828
Query: 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QG 593
+ +LDE T L E + E L R++ G T +V+ H L I+NAD I + +G
Sbjct: 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEG 888
Query: 594 RKIVKTGSHEELISNPNS 611
IV TG+ EE+ NP+S
Sbjct: 889 GYIVATGTPEEIAKNPHS 906
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 521 LSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + I +LDE T L + + L ++ +G T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 578 RLSTIRNADVIAVV------QGRKIVKTGSHEELISNPNSA 612
IRNAD I + G ++V G+ +EL+ NP+S+
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSS 565
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKGLDL-KWLRQQIG 461
L +P G++ AL+G +G+GKST+ ++ + Y GEILLDG NI L + R+ +
Sbjct: 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83
Query: 462 LVNQEPALFATTIRENIL-------YGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
L Q P N L G++ E T+ K E + + + R+ +
Sbjct: 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE- 142
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT--T 572
SGG+K+R I + +V P+ +LDE S LD ++ V ++ M G
Sbjct: 143 -----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN-AMRGPNFGA 196
Query: 573 VVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+V+ H R+ D + V+ ++V TG E
Sbjct: 197 LVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKGLD- 452
D AI LD+ G++ A++G +GSGKST+ + + YE G + G ++ L
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 453 -----------LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
++ + G+ NQ F T + + T++ + E ++
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 129
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
+ +PE T+ G SGG+K+R I + V P + +LDE+ S LD ++ V +
Sbjct: 130 LL-KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186
Query: 562 ALDRVMVG-RTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGS 601
++ + G R+ ++V H R+ D + V+ +IVK+G
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKGLD- 452
D AI LD+ G++ A++G +GSGKST+ + + YE G + G ++ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 453 -----------LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
++ + G+ NQ F T + + T++ + E ++
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 148
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
+ +PE T+ G SGG+K+R I + V P + +LDE+ S LD ++ V +
Sbjct: 149 LL-KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205
Query: 562 ALDRVMVG-RTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGS 601
++ + G R+ ++V H R+ D + V+ +IVK+G
Sbjct: 206 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 97/200 (48%), Gaps = 22/200 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+S Y D + ++ + I G +V G +G GK+T++ I + +PL GEI
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
+ +G +KG + +L ++I +V ++ ++ LYG EI A + E
Sbjct: 67 IYNGVPITKVKG-KIFFLPEEI-IVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVE 123
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ L E LS G +R+ ++ ++ N I +LD+ A+D +S++
Sbjct: 124 VLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 171
Query: 559 VQEALDRVMVGRTTVVVAHR 578
V +++ ++ + V+++ R
Sbjct: 172 VLKSILEILKEKGIVIISSR 191
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 47/212 (22%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL--LDGNN---------IKGLDLKW 455
+ G +V +VG +G+GKST + + L+G+++ L G+N +G +L+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKI-------LAGQLIPNLCGDNDSWDGVIRAFRGNELQN 96
Query: 456 LRQQIGLVNQEPA-------LFATTIRENI--LYGKDDAT--MEEITRAAKLSEAMSFIS 504
+++ P L ++ + L K D T +EE+ +A +L +
Sbjct: 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL---- 152
Query: 505 NLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
ER IQ LSGG+ QR+AI+ A+++N + DE +S LD + A+
Sbjct: 153 -----------EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201
Query: 564 DRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
R+ G++ +VV H L+ + +D+I VV G
Sbjct: 202 RRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
+I G+++ +VG +G GK+T + + EP G+I D L + + Q I
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD------LTVAYKPQYI----- 356
Query: 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
A + T+ E +L D + + +L + + I + ++ +V E LSGG+
Sbjct: 357 -KADYEGTVYE-LLSKIDASKLNSNFYKTELLKPLGII----DLYDREVNE----LSGGE 406
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG--RTTVVVAHRLSTIR 583
QR+AI+ ++++ I LLDE ++ LD E +V A+ + +T +VV H + I
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXID 466
Query: 584 N-ADVIAVVQG 593
+D + V +G
Sbjct: 467 YVSDRLXVFEG 477
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
+I G+++ +VG +G GK+T + ++ EP G++ D L + + Q I
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------LTVAYKPQYIK---- 427
Query: 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
A + T+ E +L D + + +L + + I E LSGG+
Sbjct: 428 --AEYEGTVYE-LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--------DLSGGE 476
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG--RTTVVVAH 577
QR+AI+ ++++ I LLDE ++ LD E +V A+ +M +T +VV H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 11/191 (5%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLKWLRQQIGLVNQ 465
G +V +VG +G+GK+T + ++ P E +N+ +G +L+ +++
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-QLSGG 524
P + + ++L + E+ + K+ E F + E V +R + QLSGG
Sbjct: 177 RPVVKPQYV--DLLPKAVKGKVRELLK--KVDEVGKFEEVVKELELENVLDRELHQLSGG 232
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR 583
+ QR+AI+ A+++ DE +S LD V + R+ G+ +VV H L+ +
Sbjct: 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 292
Query: 584 N-ADVIAVVQG 593
+DVI VV G
Sbjct: 293 YLSDVIHVVYG 303
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++R G+ + +VG +G GK+T + ++ +PT GK
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
+I G+++ +VG +G GK+T + ++ EP G++ D L + + Q I
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------LTVAYKPQYIK---- 413
Query: 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
A + T+ E +L D + + +L + + I E LSGG+
Sbjct: 414 --AEYEGTVYE-LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--------DLSGGE 462
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG--RTTVVVAH 577
QR+AI+ ++++ I LLDE ++ LD E +V A+ +M +T +VV H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 25/198 (12%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEI---LLDGNN--------IKGLDLKWLRQ 458
G +V +VG +G+GK+T + + L+G++ L + N+ +G +L+ +
Sbjct: 103 GMVVGIVGPNGTGKTTAVKI-------LAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE 155
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
++ P + + ++L + E+ + K+ E F + E V +R
Sbjct: 156 RLKNGEIRPVVKPQYV--DLLPKAVKGKVRELLK--KVDEVGKFEEVVKELELENVLDRE 211
Query: 519 I-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVA 576
+ QLSGG+ QR+AI+ A+++ DE +S LD V + R+ G+ +VV
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
Query: 577 HRLSTIRN-ADVIAVVQG 593
H L+ + +DVI VV G
Sbjct: 272 HDLAVLDYLSDVIHVVYG 289
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++R G+ + +VG +G GK+T + ++ +PT GK
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 398
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 18/227 (7%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWL 456
I K I G L G +G+GK+T+++++ + SG + L G G + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 457 RQQIGLVNQ---EPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFE 511
RQ IG V+ E + + ++ G K ++I + +EA + + +
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGXSAK 154
Query: 512 TQ--VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
Q +G LS G+KQR+ I+RA+ P +L+LDE + LD + S+ LD +
Sbjct: 155 AQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 570 RTT---VVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSA 612
T + V H + I N I +++ + ++ G+ E+++++ N +
Sbjct: 211 YPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXS 257
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 30/197 (15%)
Query: 388 SFCYPSRPDVAIFDKFCLDIPAGK-----IVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
+F YPS F L++ G+ I+ ++G +G+GK+T+I L+ +P G+
Sbjct: 353 AFSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ-- 408
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
+I L++ Q+I F T+R+ + + K R L+
Sbjct: 409 ----DIPKLNVSMKPQKIA------PKFPGTVRQ-LFFKK--------IRGQFLNPQFQT 449
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
P R + + + LSGG+ QR+AI A+ I L+DE ++ LD+E +
Sbjct: 450 DVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509
Query: 563 LDRVMV--GRTTVVVAH 577
+ R ++ +T +V H
Sbjct: 510 IRRFILHNKKTAFIVEH 526
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 409 AGKIVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLD---GNNIKGLDLKWLR 457
G+++ LVG +G GKST + ++ RF +P + ++ G+ ++ K L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 458 QQIG------LVNQEPALFATTIRE--NILYGKDDATMEEITRAAKLSEAMSFISNLPER 509
I V+ P +++ +L + + + E++ R K+ + + + E+
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEK 221
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE-NSVQEALDRVMV 568
LSGG+ QR AI + V+ + + DE +S LD + N+ Q +
Sbjct: 222 -----------LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 569 GRTTVVVAHRLSTIRN-ADVIAVVQG 593
+ + V H LS + +D + ++ G
Sbjct: 271 TKYVICVEHDLSVLDYLSDFVCIIYG 296
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGK-----SMALVGQSGSG 1058
I D E+L N + FSYPS + DF L V G+ + ++G++G+G
Sbjct: 338 IADATEDLQNDSAS-----RAFSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTG 390
Query: 1059 KSTVLSLILRFYDPTAGK 1076
K+T++ L+ P G+
Sbjct: 391 KTTLIKLLAGALKPDEGQ 408
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL 469
G+I+ ++G +G GK+T F L GEI D ++ +QI ++ +P
Sbjct: 294 GEIIGILGPNGIGKTT-------FARILVGEITADEGSVTP------EKQI--LSYKPQR 338
Query: 470 FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529
+ ++A+ + ++ ++ E ++ NL E+ V + LSGG+ Q++
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND----LSGGELQKL 394
Query: 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR--TTVVVAHRLSTIRN--A 585
I+ + K + +LD+ +S LD E V +A+ RV R T ++ H LS I + A
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIA 453
Query: 586 DVIAVVQG 593
D I V +G
Sbjct: 454 DRIIVFKG 461
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 31/218 (14%)
Query: 394 RPDVAIFDKFCLDIPAGK-IVALVGGSGSGKSTVISLIERFYEPLSGEILL---DGNNIK 449
R V F F L P I+ ++G +G GK+TV+ + L+GEI+ D N+
Sbjct: 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKI-------LAGEIIPNFGDPNSKV 60
Query: 450 GLD--LKWLRQQIGLVNQEPALFATTIR-----------ENILYGKDDATMEEITRAAKL 496
G D LK R + + N L++ ++ L G + + +I K
Sbjct: 61 GKDEVLKRFRGK-EIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK 119
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E + N+ + LSGG QR+ ++ ++++ + + D+ +S LD
Sbjct: 120 DEVKELL-NMTNLWNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 557 NSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
++ +A+ ++ + +VV H L + D+I ++ G
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYG 212
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 521 LSGGQKQRIAISRAIVKN--PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + +LDE + L + E L R+ +G T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 578 RLSTIRNADVIAVV------QGRKIVKTGSHEELISNPNSAYAA 615
TI +AD I + G +IV +G ++EL+ N +S A
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGA 625
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPS---ILLLDEATSALDAESENSVQEALDR-VMV 568
++G+ LSGG+ QR+ ++ + K + + +LDE T+ L + + ++ V
Sbjct: 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915
Query: 569 GRTTVVVAHRLSTIRNADVI 588
G T +V+ H L I+ +D I
Sbjct: 916 GNTVIVIEHNLDVIKTSDWI 935
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 22/132 (16%)
Query: 496 LSEAMSFISNLPE---RFET---------QVGERGIQLSGGQKQRIAISRAIVKNP---S 540
+ +A+ F +++P+ + ET ++G+ LSGG+ QR+ ++ + + +
Sbjct: 809 VEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868
Query: 541 ILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVIAVV------QG 593
+ +LDE T+ L + + + L R V G T +V+ H L I+ AD I + +G
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928
Query: 594 RKIVKTGSHEEL 605
+IV G+ EE+
Sbjct: 929 GQIVAVGTPEEV 940
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 521 LSGGQKQRIAISRAIVKNPSILL--LDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + +L LDE + L + + L + +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 578 RLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
T+ AD + A + G ++V G+ EE++++PNS
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 604
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 405 LDIPAGKIVALVGGSGSGKSTV 426
++IP GK+V L G SGSGKS++
Sbjct: 39 VEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 22/132 (16%)
Query: 496 LSEAMSFISNLPE---RFET---------QVGERGIQLSGGQKQRIAISRAIVKNP---S 540
+ +A+ F +++P+ + ET ++G+ LSGG+ QR+ ++ + + +
Sbjct: 809 VEDALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868
Query: 541 ILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVIAVV------QG 593
+ +LDE T+ L + + + L R V G T +V+ H L I+ AD I + +G
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928
Query: 594 RKIVKTGSHEEL 605
+IV G+ EE+
Sbjct: 929 GQIVAVGTPEEV 940
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 521 LSGGQKQRIAISRAIVKNPSILL--LDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + +L LDE + L + + L +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 578 RLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
T AD + A + G ++V G+ EE+ ++PNS
Sbjct: 565 DEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEVXNDPNS 604
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 26/147 (17%)
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPE---RFET---------QVGERGIQLSGGQKQR 528
GK+ A + ++T + +A+ F +++P+ + ET ++G+ LSGG+ QR
Sbjct: 496 GKNIAEVLDMT----VEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQR 551
Query: 529 IAISRAIVKNP---SILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRN 584
+ ++ + + ++ +LDE T+ L + + + L R V G T +V+ H L I+
Sbjct: 552 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT 611
Query: 585 ADVIAVV------QGRKIVKTGSHEEL 605
AD I + +G +IV G+ EE+
Sbjct: 612 ADYIIDLGPEGGDRGGQIVAVGTPEEV 638
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 521 LSGGQKQRIAISRAIVKNPSILL--LDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + +L LDE + L + + L + +G T +VV H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 578 RLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
T+ AD + A + G ++V G+ EE++++PNS
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 302
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
LSGG K ++A++RA+++N ILLLDE T+ LD
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQK ++ ++ + P +++LDE T+ LD +S ++ +AL G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 581 TIRN--ADVIAVVQGR 594
+N +V AV GR
Sbjct: 960 FTKNLTEEVWAVKDGR 975
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1012 TNVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
T + +++ + F YP S+P++ D N + +A++G +G+GKST+++++
Sbjct: 666 TKQKAIVKVTNMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 1070 YDPTAGK 1076
PT+G+
Sbjct: 723 LLPTSGE 729
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 332 GLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---TGRKLDKLSGHIEFKDVS 388
GL L + + T F++ AA E+ D K G K K ++ ++
Sbjct: 620 GLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKT-KQKAIVKVTNME 678
Query: 389 FCYP--SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
F YP S+P + + C +A++G +G+GKST+I+++ P SGE+ N
Sbjct: 679 FQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFATT---IRENILYGKDDATMEEITRAAKLSEA 499
+ +++Q + E L T I+ G+D TM+ R ++A
Sbjct: 736 ----CRIAYIKQH-AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDA 786
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 36/212 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDI----PAGKIVALVGGSGSGKSTVISLIERFYEPL 437
I+ K+V + +++F L+ G+ V ++G +GSGK+T++ I P
Sbjct: 2 IQLKNVGITLSGKG----YERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PY 56
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIREN-ILY------GKDDATMEEI 490
SG I I G++++ +R I P + + N I+Y G D E+
Sbjct: 57 SGNIF-----INGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEM 111
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
+A KL E + + + +LS GQ + S A+ P I+ LDE
Sbjct: 112 LKALKLGEEI-------------LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582
+DA + + + G+ ++V H L +
Sbjct: 159 VDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
LSGG K ++A++RA+++N ILLLDE T+ LD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQK ++ ++ + P +++LDE T+ LD +S ++ +AL G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 581 TIRN--ADVIAVVQGR 594
+N +V AV GR
Sbjct: 960 FTKNLTEEVWAVKDGR 975
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1012 TNVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
T + +++ F YP S+P++ D N + +A++G +G+GKST+++++
Sbjct: 666 TKQKAIVKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 1070 YDPTAGK 1076
PT+G+
Sbjct: 723 LLPTSGE 729
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 332 GLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---TGRKLDKLSGHIEFKDVS 388
GL L + + T F++ AA E+ D K G K K ++ +
Sbjct: 620 GLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKT-KQKAIVKVTNXE 678
Query: 389 FCYP--SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
F YP S+P + + C +A++G +G+GKST+I+++ P SGE+ N
Sbjct: 679 FQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
LSGG K ++A++RA+++N ILLLDE T+ LD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQK ++ ++ + P +++LDE T+ LD +S ++ +AL G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 581 TIRN--ADVIAVVQGR 594
+N +V AV GR
Sbjct: 954 FTKNLTEEVWAVKDGR 969
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1012 TNVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
T + +++ F YP S+P++ D N + +A++G +G+GKST+++++
Sbjct: 660 TKQKAIVKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716
Query: 1070 YDPTAGK 1076
PT+G+
Sbjct: 717 LLPTSGE 723
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 332 GLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---TGRKLDKLSGHIEFKDVS 388
GL L + + T F++ AA E+ D K G K K ++ +
Sbjct: 614 GLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKT-KQKAIVKVTNXE 672
Query: 389 FCYP--SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
F YP S+P + + C +A++G +G+GKST+I+++ P SGE+ N
Sbjct: 673 FQYPGTSKPQITDINFQC---SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 729
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 513 QVGERGIQLSGGQKQRIAIS---RAIVKNPSILLLDEATSALDAESENSVQEALDR-VMV 568
++G+ +LSGG+ QRI ++ R + ++ +LDE T+ L +Q L + V
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 569 GRTTVVVAHRLSTIRNADVI------AVVQGRKIVKTGSHEEL 605
G T + V H++ + +D + A G ++V G+ E+
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 574 VVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP-NSAYAALV 617
++ +RL N D + + QGR+I+K GSH E+ P + A +ALV
Sbjct: 280 ILQNRLMIQINQDPLGI-QGRRIIKEGSHIEVFLRPLSQAASALV 323
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + +VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDATMEEITR 492
PL GEI L +++ D + + VN +P + FA T+ + L G+D + + +
Sbjct: 221 PLQGEIRLQSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSKMALLGQDKTKLIDCSD 280
Query: 493 AAKLSEAMSFISNLPERF 510
A+ ++LP F
Sbjct: 281 VIPTPPALVGAAHLPAGF 298
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 408 PAGKIVALVGGSGSGKSTVIS-------LIERFYEPLSGEILLDGNNIKGLDLKWLRQ-- 458
P +I GG ++T+IS L R + +G+ +LD + +D++ L+Q
Sbjct: 34 PLERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDV 93
Query: 459 ------QIGLVNQEPALFATTIRENILY--GKDDATMEEITRAAKLSEAMSFISNL 506
+GLV ++ T R L+ DD ++A LS A F S L
Sbjct: 94 SIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPL 149
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 520 QLSGGQK------QRIAISRAIVKNP-SILLLDEATSALDAESENSVQEALDRVMVGRTT 572
LSGG++ R+AI+ A++ N ++LDE T LD + E +V
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 573 VVVAHRLSTIRNADVIAVVQ 592
+++ H ADVI V+
Sbjct: 340 IIITHHRELEDVADVIINVK 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,200,540
Number of Sequences: 62578
Number of extensions: 975218
Number of successful extensions: 3243
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2784
Number of HSP's gapped (non-prelim): 332
length of query: 1077
length of database: 14,973,337
effective HSP length: 109
effective length of query: 968
effective length of database: 8,152,335
effective search space: 7891460280
effective search space used: 7891460280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)